Query 019041
Match_columns 347
No_of_seqs 144 out of 1541
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 06:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00110 helicase; Provisional 100.0 2.8E-55 6.1E-60 398.8 36.8 342 1-347 103-447 (545)
2 KOG0331 ATP-dependent RNA heli 100.0 3.8E-55 8.3E-60 378.7 30.1 315 28-347 92-411 (519)
3 PLN00206 DEAD-box ATP-dependen 100.0 3.2E-52 7E-57 377.9 37.3 340 1-347 95-438 (518)
4 KOG0330 ATP-dependent RNA heli 100.0 6E-52 1.3E-56 338.0 26.2 312 24-347 58-370 (476)
5 PRK04837 ATP-dependent RNA hel 100.0 3.1E-50 6.7E-55 358.8 35.5 319 22-347 3-325 (423)
6 KOG0333 U5 snRNP-like RNA heli 100.0 3.6E-51 7.9E-56 345.1 27.1 339 1-346 219-586 (673)
7 COG0513 SrmB Superfamily II DN 100.0 2.2E-50 4.8E-55 363.4 33.7 312 27-347 29-343 (513)
8 PRK11776 ATP-dependent RNA hel 100.0 4.7E-50 1E-54 361.4 34.4 309 26-347 3-312 (460)
9 PRK10590 ATP-dependent RNA hel 100.0 5.1E-50 1.1E-54 359.5 34.1 313 28-347 2-315 (456)
10 KOG0328 Predicted ATP-dependen 100.0 6.4E-51 1.4E-55 318.7 24.3 323 14-347 14-336 (400)
11 PRK11192 ATP-dependent RNA hel 100.0 3.1E-49 6.8E-54 354.0 35.4 313 28-347 2-315 (434)
12 PRK04537 ATP-dependent RNA hel 100.0 1.7E-49 3.8E-54 362.1 34.0 315 26-347 8-327 (572)
13 KOG0339 ATP-dependent RNA heli 100.0 2.1E-49 4.5E-54 333.2 27.4 342 1-347 197-538 (731)
14 PRK11634 ATP-dependent RNA hel 100.0 1.1E-48 2.3E-53 358.8 34.0 310 26-347 5-315 (629)
15 PTZ00424 helicase 45; Provisio 100.0 4.1E-47 8.9E-52 338.2 34.8 312 25-347 26-337 (401)
16 PRK01297 ATP-dependent RNA hel 100.0 9.4E-47 2E-51 340.7 36.2 315 26-347 86-405 (475)
17 KOG0336 ATP-dependent RNA heli 100.0 3.3E-48 7.1E-53 318.3 24.0 340 1-346 186-534 (629)
18 KOG0340 ATP-dependent RNA heli 100.0 1.3E-47 2.8E-52 309.2 22.8 314 23-346 3-323 (442)
19 KOG0338 ATP-dependent RNA heli 100.0 7.8E-48 1.7E-52 324.0 22.1 314 27-346 181-495 (691)
20 KOG0345 ATP-dependent RNA heli 100.0 3.2E-45 7E-50 305.5 27.9 315 27-347 4-327 (567)
21 KOG0335 ATP-dependent RNA heli 100.0 1.1E-45 2.3E-50 314.7 25.1 329 14-347 61-407 (482)
22 KOG0341 DEAD-box protein abstr 100.0 7.1E-47 1.5E-51 308.5 16.2 338 1-346 144-490 (610)
23 KOG0343 RNA Helicase [RNA proc 100.0 2.4E-45 5.3E-50 311.7 25.0 332 3-347 50-385 (758)
24 KOG0342 ATP-dependent RNA heli 100.0 6.4E-45 1.4E-49 305.5 25.3 319 23-347 78-400 (543)
25 KOG0326 ATP-dependent RNA heli 100.0 4.7E-46 1E-50 296.3 16.9 311 24-347 82-392 (459)
26 KOG0334 RNA helicase [RNA proc 100.0 5.9E-45 1.3E-49 331.5 24.3 340 1-346 338-682 (997)
27 KOG0346 RNA helicase [RNA proc 100.0 3.4E-44 7.3E-49 297.0 21.6 304 27-335 19-326 (569)
28 KOG0332 ATP-dependent RNA heli 100.0 1.6E-43 3.4E-48 287.3 21.2 312 22-347 85-400 (477)
29 KOG0348 ATP-dependent RNA heli 100.0 9.8E-43 2.1E-47 294.8 23.8 324 22-347 131-517 (708)
30 TIGR03817 DECH_helic helicase/ 100.0 2.5E-41 5.5E-46 316.0 31.4 299 33-347 20-349 (742)
31 KOG0347 RNA helicase [RNA proc 100.0 1.8E-42 3.8E-47 294.2 15.6 319 21-347 175-533 (731)
32 PRK02362 ski2-like helicase; P 100.0 1.1E-40 2.3E-45 315.1 27.8 304 27-346 1-348 (737)
33 TIGR00614 recQ_fam ATP-depende 100.0 5.3E-40 1.1E-44 295.7 27.4 279 44-347 6-296 (470)
34 PRK00254 ski2-like helicase; P 100.0 9.8E-40 2.1E-44 307.8 29.8 302 28-346 2-340 (720)
35 KOG0327 Translation initiation 100.0 1.8E-40 4E-45 271.3 20.3 313 20-346 19-332 (397)
36 PLN03137 ATP-dependent DNA hel 100.0 2.7E-39 5.9E-44 301.8 30.6 296 29-347 437-750 (1195)
37 PRK13767 ATP-dependent helicas 100.0 1.8E-39 4E-44 309.4 28.7 310 34-347 18-360 (876)
38 KOG0337 ATP-dependent RNA heli 100.0 2.3E-40 4.9E-45 272.9 19.3 311 26-346 20-330 (529)
39 PRK11057 ATP-dependent DNA hel 100.0 1.9E-38 4.2E-43 292.7 29.7 288 33-347 8-306 (607)
40 PRK01172 ski2-like helicase; P 100.0 1.8E-38 3.9E-43 298.1 28.2 297 27-346 1-330 (674)
41 TIGR01389 recQ ATP-dependent D 100.0 2.3E-38 5.1E-43 293.1 28.6 282 40-347 3-294 (591)
42 COG1201 Lhr Lhr-like helicases 100.0 1.9E-38 4.2E-43 290.1 27.3 306 34-347 8-324 (814)
43 PHA02558 uvsW UvsW helicase; P 100.0 1.1E-37 2.3E-42 282.1 26.3 323 3-347 66-415 (501)
44 TIGR00580 mfd transcription-re 100.0 2.8E-37 6.1E-42 291.6 30.2 284 34-347 436-732 (926)
45 KOG4284 DEAD box protein [Tran 100.0 3.6E-38 7.8E-43 272.7 19.5 320 20-347 18-342 (980)
46 PRK10689 transcription-repair 100.0 2E-36 4.3E-41 291.8 30.7 283 35-347 587-881 (1147)
47 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.3E-36 4.9E-41 278.1 28.6 292 39-345 5-354 (844)
48 KOG0344 ATP-dependent RNA heli 100.0 3.9E-37 8.4E-42 264.5 20.6 334 8-347 113-458 (593)
49 KOG0350 DEAD-box ATP-dependent 100.0 7.6E-37 1.6E-41 257.3 21.2 313 24-346 124-502 (620)
50 PRK10917 ATP-dependent DNA hel 100.0 1.2E-35 2.7E-40 276.9 29.1 280 38-347 251-551 (681)
51 TIGR00643 recG ATP-dependent D 100.0 8.8E-35 1.9E-39 269.5 29.3 283 36-347 223-528 (630)
52 PRK09401 reverse gyrase; Revie 100.0 7.8E-35 1.7E-39 281.4 30.0 278 39-345 70-398 (1176)
53 COG1111 MPH1 ERCC4-like helica 100.0 8.5E-35 1.9E-39 246.5 23.8 293 46-347 12-445 (542)
54 COG1204 Superfamily II helicas 100.0 2.2E-34 4.8E-39 266.8 24.9 302 32-345 14-358 (766)
55 COG0514 RecQ Superfamily II DN 100.0 3.3E-34 7.2E-39 253.4 22.6 284 38-347 5-300 (590)
56 PRK14701 reverse gyrase; Provi 100.0 3.2E-33 7E-38 275.7 29.1 285 36-347 66-403 (1638)
57 COG1202 Superfamily II helicas 100.0 9.5E-33 2.1E-37 236.6 26.2 305 25-345 192-508 (830)
58 PRK09751 putative ATP-dependen 100.0 4.7E-33 1E-37 270.2 26.9 275 69-347 1-347 (1490)
59 TIGR01054 rgy reverse gyrase. 100.0 1.3E-32 2.8E-37 266.4 28.5 279 39-345 68-397 (1171)
60 COG1061 SSL2 DNA or RNA helica 100.0 9.4E-33 2E-37 245.1 23.3 274 49-347 36-352 (442)
61 cd00268 DEADc DEAD-box helicas 100.0 5.4E-32 1.2E-36 218.5 23.4 202 29-233 1-202 (203)
62 KOG0354 DEAD-box like helicase 100.0 2.4E-32 5.3E-37 244.6 23.2 304 34-347 47-494 (746)
63 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.9E-31 4E-36 249.8 28.6 272 52-347 5-282 (819)
64 PRK11664 ATP-dependent RNA hel 100.0 1.6E-31 3.5E-36 250.8 26.7 272 52-347 8-285 (812)
65 TIGR00603 rad25 DNA repair hel 100.0 1.5E-31 3.2E-36 244.0 25.6 272 49-347 255-562 (732)
66 TIGR03158 cas3_cyano CRISPR-as 100.0 5.8E-31 1.3E-35 228.2 27.0 274 53-346 1-337 (357)
67 TIGR01587 cas3_core CRISPR-ass 100.0 6.8E-32 1.5E-36 236.7 20.8 264 66-344 1-295 (358)
68 COG1205 Distinct helicase fami 100.0 4.5E-31 9.7E-36 248.2 27.3 302 34-346 55-383 (851)
69 PHA02653 RNA helicase NPH-II; 100.0 7.3E-31 1.6E-35 240.3 23.8 278 52-347 167-466 (675)
70 PRK13766 Hef nuclease; Provisi 100.0 7.3E-30 1.6E-34 244.4 31.0 293 46-347 12-443 (773)
71 COG1200 RecG RecG-like helicas 100.0 3.4E-30 7.3E-35 227.7 24.1 280 38-346 252-552 (677)
72 KOG0353 ATP-dependent DNA heli 100.0 3.1E-31 6.7E-36 217.1 16.0 299 29-347 71-387 (695)
73 KOG0329 ATP-dependent RNA heli 100.0 1.7E-31 3.7E-36 207.0 12.6 274 28-347 43-318 (387)
74 KOG0952 DNA/RNA helicase MER3/ 100.0 5.3E-30 1.1E-34 233.1 21.7 297 44-345 105-440 (1230)
75 KOG0351 ATP-dependent DNA heli 100.0 8.9E-29 1.9E-33 231.4 23.2 288 38-347 252-555 (941)
76 COG1197 Mfd Transcription-repa 100.0 3.8E-28 8.2E-33 226.3 26.5 285 32-347 577-875 (1139)
77 KOG0352 ATP-dependent DNA heli 100.0 6.2E-29 1.3E-33 206.2 16.2 289 37-347 6-325 (641)
78 TIGR03714 secA2 accessory Sec 100.0 1.2E-27 2.5E-32 218.7 25.0 278 49-344 68-489 (762)
79 PRK05580 primosome assembly pr 100.0 3.3E-27 7.2E-32 219.7 25.8 278 49-347 144-500 (679)
80 PRK12898 secA preprotein trans 100.0 6.2E-27 1.3E-31 211.5 25.6 278 44-344 99-538 (656)
81 TIGR00963 secA preprotein tran 100.0 9.6E-27 2.1E-31 211.4 25.2 278 45-345 53-471 (745)
82 PRK11448 hsdR type I restricti 100.0 1.1E-26 2.3E-31 224.0 25.5 282 49-347 413-776 (1123)
83 PF00270 DEAD: DEAD/DEAH box h 100.0 4.3E-27 9.3E-32 184.5 17.5 164 51-220 1-167 (169)
84 PRK09694 helicase Cas3; Provis 100.0 3.8E-26 8.1E-31 214.4 26.6 290 47-344 284-638 (878)
85 PRK09200 preprotein translocas 100.0 3E-26 6.5E-31 211.4 25.4 281 44-346 74-498 (790)
86 TIGR00595 priA primosomal prot 100.0 5.3E-26 1.1E-30 204.4 25.3 257 68-347 1-332 (505)
87 COG4098 comFA Superfamily II D 100.0 6.6E-26 1.4E-30 183.3 22.5 271 49-347 97-375 (441)
88 PRK13104 secA preprotein trans 99.9 1.3E-25 2.9E-30 206.9 24.5 280 45-344 79-509 (896)
89 KOG0951 RNA helicase BRR2, DEA 99.9 1E-25 2.2E-30 208.3 22.3 307 32-345 294-651 (1674)
90 PRK11131 ATP-dependent RNA hel 99.9 2E-24 4.4E-29 207.1 26.5 268 51-347 76-357 (1294)
91 KOG0349 Putative DEAD-box RNA 99.9 4.8E-25 1E-29 183.7 17.9 245 100-346 286-577 (725)
92 PRK12904 preprotein translocas 99.9 2.9E-24 6.2E-29 197.9 24.5 277 45-344 78-495 (830)
93 PRK04914 ATP-dependent helicas 99.9 5.2E-24 1.1E-28 201.4 25.8 289 48-347 151-566 (956)
94 PRK12899 secA preprotein trans 99.9 6E-24 1.3E-28 195.8 23.5 148 30-187 65-228 (970)
95 TIGR01967 DEAH_box_HrpA ATP-de 99.9 1.6E-23 3.4E-28 201.7 24.9 271 53-347 71-350 (1283)
96 TIGR00348 hsdR type I site-spe 99.9 1.2E-23 2.7E-28 195.8 22.5 282 49-347 238-611 (667)
97 COG4096 HsdR Type I site-speci 99.9 1.1E-23 2.3E-28 189.4 18.5 277 48-347 164-501 (875)
98 PRK13107 preprotein translocas 99.9 5.6E-23 1.2E-27 189.2 21.2 130 45-187 79-215 (908)
99 COG4581 Superfamily II RNA hel 99.9 2.8E-22 6.1E-27 187.3 21.6 287 40-345 111-488 (1041)
100 smart00487 DEXDc DEAD-like hel 99.9 1.1E-21 2.4E-26 158.1 20.4 186 44-235 3-190 (201)
101 TIGR01407 dinG_rel DnaQ family 99.9 8.6E-21 1.9E-25 182.2 27.5 145 34-187 231-453 (850)
102 COG1110 Reverse gyrase [DNA re 99.9 4.3E-21 9.3E-26 175.6 22.2 271 45-346 79-406 (1187)
103 COG1203 CRISPR-associated heli 99.9 2.3E-21 4.9E-26 182.6 20.4 290 49-344 195-511 (733)
104 KOG0947 Cytoplasmic exosomal R 99.9 6.6E-21 1.4E-25 172.7 21.0 279 44-345 293-674 (1248)
105 KOG0950 DNA polymerase theta/e 99.9 4.1E-21 8.8E-26 174.7 17.2 312 21-347 195-568 (1008)
106 PRK12906 secA preprotein trans 99.9 1.9E-20 4E-25 172.2 21.0 130 45-187 77-213 (796)
107 PLN03142 Probable chromatin-re 99.9 3.4E-20 7.5E-25 176.3 23.1 285 49-346 169-559 (1033)
108 COG1643 HrpA HrpA-like helicas 99.9 5.1E-20 1.1E-24 171.0 22.3 275 49-347 50-333 (845)
109 COG1198 PriA Primosomal protei 99.9 2.5E-19 5.5E-24 164.0 23.5 279 48-347 197-554 (730)
110 KOG1123 RNA polymerase II tran 99.8 7.2E-21 1.6E-25 161.6 11.8 288 27-347 282-609 (776)
111 KOG0948 Nuclear exosomal RNA h 99.8 1.2E-19 2.5E-24 161.0 17.4 276 49-345 129-490 (1041)
112 cd00046 DEXDc DEAD-like helica 99.8 9.8E-19 2.1E-23 132.8 16.4 144 65-215 1-144 (144)
113 PF04851 ResIII: Type III rest 99.8 2.1E-19 4.4E-24 142.9 13.1 153 49-217 3-184 (184)
114 KOG0922 DEAH-box RNA helicase 99.8 6.6E-18 1.4E-22 149.0 22.7 274 49-347 51-336 (674)
115 COG0556 UvrB Helicase subunit 99.8 1.3E-17 2.8E-22 143.2 23.6 81 266-346 434-515 (663)
116 PRK12326 preprotein translocas 99.8 7.9E-18 1.7E-22 152.0 22.5 130 45-187 75-211 (764)
117 PRK07246 bifunctional ATP-depe 99.8 1.3E-17 2.9E-22 158.3 25.2 281 45-345 242-712 (820)
118 PRK13103 secA preprotein trans 99.8 1.3E-17 2.9E-22 154.2 21.0 130 45-187 79-215 (913)
119 KOG0920 ATP-dependent RNA heli 99.8 3E-17 6.5E-22 152.4 22.7 296 36-346 160-489 (924)
120 KOG0385 Chromatin remodeling c 99.8 1.2E-17 2.5E-22 148.9 19.0 279 49-344 167-557 (971)
121 KOG0387 Transcription-coupled 99.8 1.8E-16 3.9E-21 141.9 22.0 284 49-345 205-617 (923)
122 PRK08074 bifunctional ATP-depe 99.7 5.6E-16 1.2E-20 149.9 25.3 70 276-345 751-822 (928)
123 KOG0923 mRNA splicing factor A 99.7 3.5E-16 7.7E-21 137.5 19.6 278 45-347 261-552 (902)
124 TIGR03117 cas_csf4 CRISPR-asso 99.7 4.6E-15 1E-19 135.2 26.6 75 265-343 460-538 (636)
125 PRK12902 secA preprotein trans 99.7 1.4E-15 3.1E-20 140.1 22.8 130 45-187 82-218 (939)
126 CHL00122 secA preprotein trans 99.7 6.9E-16 1.5E-20 142.3 20.8 129 45-186 73-208 (870)
127 COG4889 Predicted helicase [Ge 99.7 2.2E-17 4.8E-22 149.1 9.7 299 37-346 149-547 (1518)
128 KOG0384 Chromodomain-helicase 99.7 1.1E-16 2.3E-21 149.3 13.0 303 22-344 349-769 (1373)
129 KOG0390 DNA repair protein, SN 99.7 9.3E-15 2E-19 133.8 21.7 160 49-215 238-414 (776)
130 PRK12903 secA preprotein trans 99.7 7.7E-15 1.7E-19 134.9 21.0 130 45-187 75-211 (925)
131 KOG1000 Chromatin remodeling p 99.7 6.8E-15 1.5E-19 125.5 18.4 281 47-344 196-561 (689)
132 TIGR00631 uvrb excinuclease AB 99.7 1.2E-14 2.7E-19 134.5 21.3 82 266-347 430-512 (655)
133 PRK12900 secA preprotein trans 99.7 7.3E-15 1.6E-19 136.9 19.0 127 49-187 138-271 (1025)
134 KOG0924 mRNA splicing factor A 99.7 1.5E-14 3.1E-19 127.9 19.8 272 47-347 354-643 (1042)
135 KOG0389 SNF2 family DNA-depend 99.7 2.7E-15 5.8E-20 134.5 14.6 156 49-216 399-563 (941)
136 KOG0392 SNF2 family DNA-depend 99.6 4.1E-14 8.8E-19 132.3 18.0 160 49-216 975-1139(1549)
137 PRK11747 dinG ATP-dependent DN 99.6 1.7E-12 3.7E-17 122.1 28.2 65 46-118 23-96 (697)
138 PF07652 Flavi_DEAD: Flaviviru 99.6 6.4E-15 1.4E-19 106.8 9.2 137 62-219 2-140 (148)
139 KOG0949 Predicted helicase, DE 99.6 1.2E-14 2.6E-19 133.0 12.9 160 49-218 511-674 (1330)
140 COG1199 DinG Rad3-related DNA 99.6 2.4E-13 5.2E-18 128.6 21.3 74 42-122 8-85 (654)
141 PF02399 Herpes_ori_bp: Origin 99.6 1.9E-13 4.1E-18 125.1 19.3 258 64-345 49-344 (824)
142 TIGR00604 rad3 DNA repair heli 99.6 6.8E-13 1.5E-17 125.7 23.1 75 44-123 5-83 (705)
143 KOG0926 DEAH-box RNA helicase 99.6 1.5E-13 3.2E-18 123.7 15.5 223 55-299 262-503 (1172)
144 PF00176 SNF2_N: SNF2 family N 99.6 6.7E-14 1.5E-18 120.1 12.9 147 64-217 25-174 (299)
145 PRK05298 excinuclease ABC subu 99.5 2.9E-12 6.3E-17 119.7 23.2 74 274-347 443-516 (652)
146 KOG0925 mRNA splicing factor A 99.5 7.3E-13 1.6E-17 113.1 16.7 294 24-346 22-332 (699)
147 KOG0953 Mitochondrial RNA heli 99.5 1.5E-13 3.2E-18 119.0 12.6 232 63-343 190-425 (700)
148 KOG0951 RNA helicase BRR2, DEA 99.5 2.9E-12 6.2E-17 120.6 16.5 265 50-336 1144-1440(1674)
149 COG0610 Type I site-specific r 99.5 4.6E-12 1E-16 122.4 18.7 140 65-218 274-416 (962)
150 KOG1002 Nucleotide excision re 99.4 3E-11 6.5E-16 103.6 16.5 128 48-188 183-330 (791)
151 smart00488 DEXDc2 DEAD-like he 99.4 1.1E-11 2.3E-16 104.5 13.5 76 45-123 5-84 (289)
152 smart00489 DEXDc3 DEAD-like he 99.4 1.1E-11 2.3E-16 104.5 13.5 76 45-123 5-84 (289)
153 PRK14873 primosome assembly pr 99.4 5.5E-11 1.2E-15 110.2 18.7 137 68-222 164-310 (665)
154 PRK12901 secA preprotein trans 99.3 3.5E-11 7.5E-16 113.0 16.0 127 49-187 169-303 (1112)
155 TIGR02562 cas3_yersinia CRISPR 99.3 2.7E-10 5.8E-15 107.6 21.8 289 49-344 408-855 (1110)
156 KOG4439 RNA polymerase II tran 99.3 4.4E-11 9.5E-16 106.6 15.3 138 49-188 325-477 (901)
157 KOG0386 Chromatin remodeling c 99.3 5.9E-12 1.3E-16 116.1 7.7 282 49-344 394-796 (1157)
158 KOG4150 Predicted ATP-dependen 99.3 4.5E-11 9.7E-16 104.3 12.0 294 44-346 281-602 (1034)
159 PF06862 DUF1253: Protein of u 99.2 1.7E-09 3.6E-14 94.5 19.8 236 100-335 37-358 (442)
160 cd00079 HELICc Helicase superf 99.2 1.7E-10 3.8E-15 85.9 9.7 82 266-347 16-98 (131)
161 PF07517 SecA_DEAD: SecA DEAD- 99.1 1.5E-09 3.2E-14 89.2 12.8 131 44-187 73-210 (266)
162 KOG0388 SNF2 family DNA-depend 99.1 7.3E-10 1.6E-14 99.2 11.7 154 49-215 567-733 (1185)
163 KOG1015 Transcription regulato 99.1 9.4E-09 2E-13 95.0 17.5 79 267-345 1131-1236(1567)
164 PF00271 Helicase_C: Helicase 99.0 8.7E-10 1.9E-14 73.9 5.8 53 295-347 1-53 (78)
165 KOG0391 SNF2 family DNA-depend 99.0 2.1E-09 4.5E-14 101.1 9.8 156 49-217 615-777 (1958)
166 COG0653 SecA Preprotein transl 99.0 1.3E-08 2.8E-13 94.6 14.7 126 51-186 80-212 (822)
167 PRK15483 type III restriction- 98.9 1.4E-08 3E-13 96.4 13.3 143 65-217 60-240 (986)
168 PF13086 AAA_11: AAA domain; P 98.9 6.6E-09 1.4E-13 85.8 9.3 73 49-122 1-75 (236)
169 PF13872 AAA_34: P-loop contai 98.9 2.4E-08 5.2E-13 82.3 12.2 157 49-218 37-223 (303)
170 KOG2340 Uncharacterized conser 98.9 4.2E-08 9E-13 85.4 12.2 287 48-335 215-610 (698)
171 PF13604 AAA_30: AAA domain; P 98.8 2.5E-08 5.3E-13 79.4 9.5 123 49-214 1-130 (196)
172 KOG0952 DNA/RNA helicase MER3/ 98.8 2E-09 4.4E-14 100.3 3.3 264 50-329 928-1207(1230)
173 PF02562 PhoH: PhoH-like prote 98.8 8.6E-09 1.9E-13 81.2 5.0 146 48-214 3-155 (205)
174 smart00490 HELICc helicase sup 98.8 1.7E-08 3.6E-13 68.3 5.8 56 292-347 2-57 (82)
175 COG0553 HepA Superfamily II DN 98.7 9E-07 2E-11 87.4 18.4 136 48-189 337-487 (866)
176 PF12340 DUF3638: Protein of u 98.6 1.2E-06 2.5E-11 69.9 11.6 128 28-165 4-145 (229)
177 PF09848 DUF2075: Uncharacteri 98.6 5.4E-07 1.2E-11 78.8 10.3 108 66-201 3-117 (352)
178 KOG1802 RNA helicase nonsense 98.5 5.9E-07 1.3E-11 80.6 9.3 85 41-136 402-486 (935)
179 PRK10536 hypothetical protein; 98.5 3.5E-06 7.5E-11 68.6 12.8 148 45-213 55-211 (262)
180 KOG1803 DNA helicase [Replicat 98.5 6.2E-07 1.3E-11 79.8 8.9 65 49-121 185-250 (649)
181 TIGR00376 DNA helicase, putati 98.5 1.3E-06 2.9E-11 81.7 11.6 67 48-122 156-223 (637)
182 PRK11773 uvrD DNA-dependent he 98.5 3.5E-05 7.7E-10 74.0 21.2 72 48-125 8-79 (721)
183 PRK10875 recD exonuclease V su 98.5 4E-06 8.8E-11 77.7 14.2 142 51-214 154-301 (615)
184 TIGR01447 recD exodeoxyribonuc 98.5 3.1E-06 6.8E-11 78.2 13.3 143 51-214 147-295 (586)
185 KOG1132 Helicase of the DEAD s 98.5 1.7E-06 3.7E-11 80.2 11.1 140 45-187 18-260 (945)
186 TIGR01448 recD_rel helicase, p 98.4 4.6E-06 1E-10 79.3 13.8 128 45-214 320-452 (720)
187 TIGR01075 uvrD DNA helicase II 98.4 3.3E-05 7.2E-10 74.2 19.8 72 48-125 3-74 (715)
188 PF13245 AAA_19: Part of AAA d 98.4 2E-06 4.3E-11 56.6 7.4 53 64-120 10-62 (76)
189 COG3421 Uncharacterized protei 98.4 4.6E-06 1E-10 74.2 11.3 111 68-188 1-126 (812)
190 TIGR02768 TraA_Ti Ti-type conj 98.2 3.2E-05 7E-10 74.0 14.8 121 49-212 352-474 (744)
191 TIGR01073 pcrA ATP-dependent D 98.2 0.00015 3.2E-09 69.9 19.4 71 48-124 3-73 (726)
192 COG1875 NYN ribonuclease and A 98.2 1.4E-05 3E-10 67.3 8.9 143 44-214 223-387 (436)
193 PRK13889 conjugal transfer rel 98.1 5.9E-05 1.3E-09 73.5 14.0 126 45-214 343-470 (988)
194 PRK04296 thymidine kinase; Pro 98.1 1.1E-05 2.4E-10 63.9 7.4 111 65-213 3-113 (190)
195 KOG1131 RNA polymerase II tran 98.1 1.8E-05 4E-10 69.4 9.1 74 45-122 12-89 (755)
196 PRK13826 Dtr system oriT relax 98.1 0.00012 2.6E-09 71.9 14.8 137 34-214 367-505 (1102)
197 PF00580 UvrD-helicase: UvrD/R 98.1 1.3E-05 2.7E-10 69.3 7.4 123 50-184 1-125 (315)
198 KOG1016 Predicted DNA helicase 98.0 8.4E-05 1.8E-09 68.4 12.4 177 32-217 245-475 (1387)
199 KOG0921 Dosage compensation co 98.0 4.5E-05 9.7E-10 71.2 10.7 282 53-346 382-719 (1282)
200 PRK06526 transposase; Provisio 98.0 6.7E-05 1.5E-09 62.1 10.9 29 61-89 95-123 (254)
201 COG3587 Restriction endonuclea 98.0 2.3E-05 4.9E-10 72.7 8.7 144 65-220 75-247 (985)
202 KOG1805 DNA replication helica 98.0 4.7E-05 1E-09 71.7 10.0 137 32-188 656-810 (1100)
203 PF13401 AAA_22: AAA domain; P 98.0 9.1E-05 2E-09 54.9 9.7 20 63-82 3-22 (131)
204 PRK08181 transposase; Validate 97.9 0.00028 6E-09 58.9 11.8 107 62-217 104-211 (269)
205 PF00448 SRP54: SRP54-type pro 97.9 0.00012 2.5E-09 58.2 8.9 129 66-225 3-135 (196)
206 KOG0989 Replication factor C, 97.8 6.9E-05 1.5E-09 61.8 6.9 47 170-217 125-171 (346)
207 KOG0298 DEAD box-containing he 97.8 0.00013 2.8E-09 70.7 9.3 154 64-222 374-557 (1394)
208 PRK12723 flagellar biosynthesi 97.8 0.00075 1.6E-08 59.3 13.3 130 65-226 175-309 (388)
209 COG1419 FlhF Flagellar GTP-bin 97.8 0.0013 2.7E-08 57.1 14.3 133 64-228 203-337 (407)
210 cd00009 AAA The AAA+ (ATPases 97.8 0.00037 7.9E-09 52.6 10.0 17 64-80 19-35 (151)
211 PRK14974 cell division protein 97.7 0.00076 1.6E-08 58.1 12.0 130 65-226 141-275 (336)
212 PRK10919 ATP-dependent DNA hel 97.7 0.00026 5.6E-09 67.4 9.6 70 49-124 2-71 (672)
213 PF13307 Helicase_C_2: Helicas 97.6 9.3E-05 2E-09 57.3 5.0 67 277-345 9-79 (167)
214 smart00382 AAA ATPases associa 97.6 0.0002 4.4E-09 53.6 6.8 41 64-112 2-42 (148)
215 PRK11889 flhF flagellar biosyn 97.6 0.0024 5.2E-08 55.6 13.7 129 65-227 242-375 (436)
216 TIGR02760 TraI_TIGR conjugativ 97.6 0.0095 2.1E-07 63.2 20.2 135 49-214 429-566 (1960)
217 KOG1001 Helicase-like transcri 97.6 0.00069 1.5E-08 63.5 10.5 140 66-218 154-295 (674)
218 PRK14722 flhF flagellar biosyn 97.5 0.00071 1.5E-08 58.9 9.6 166 29-226 83-269 (374)
219 PRK11054 helD DNA helicase IV; 97.5 0.00046 9.9E-09 65.4 9.0 78 48-131 195-272 (684)
220 PRK12377 putative replication 97.5 0.0011 2.3E-08 54.7 10.1 46 65-119 102-147 (248)
221 TIGR01074 rep ATP-dependent DN 97.5 0.00087 1.9E-08 64.2 10.1 69 50-124 2-70 (664)
222 PRK05703 flhF flagellar biosyn 97.4 0.0027 5.8E-08 56.8 12.1 128 64-226 221-354 (424)
223 PRK07952 DNA replication prote 97.4 0.003 6.5E-08 51.9 11.4 43 172-214 160-204 (244)
224 PHA02533 17 large terminase pr 97.4 0.0025 5.4E-08 58.6 11.9 123 49-188 59-183 (534)
225 PRK06921 hypothetical protein; 97.4 0.0021 4.5E-08 53.8 10.3 44 64-115 117-160 (266)
226 COG1435 Tdk Thymidine kinase [ 97.4 0.0033 7.2E-08 48.7 10.3 90 65-186 5-94 (201)
227 cd01120 RecA-like_NTPases RecA 97.4 0.004 8.7E-08 47.8 11.2 38 67-112 2-39 (165)
228 PRK08727 hypothetical protein; 97.3 0.0016 3.6E-08 53.4 9.2 47 173-219 92-140 (233)
229 PF05970 PIF1: PIF1-like helic 97.3 0.00044 9.6E-09 60.8 6.0 58 49-114 1-64 (364)
230 PRK05642 DNA replication initi 97.3 0.002 4.3E-08 52.9 9.4 42 174-215 97-139 (234)
231 PTZ00293 thymidine kinase; Pro 97.3 0.003 6.5E-08 50.2 9.6 39 64-110 4-42 (211)
232 COG2805 PilT Tfp pilus assembl 97.3 0.0011 2.3E-08 54.9 7.2 53 21-92 100-152 (353)
233 PRK12727 flagellar biosynthesi 97.3 0.0086 1.9E-07 54.3 13.4 165 27-226 299-481 (559)
234 COG2256 MGS1 ATPase related to 97.3 0.0015 3.1E-08 56.3 8.0 18 65-82 49-66 (436)
235 COG1484 DnaC DNA replication p 97.3 0.0018 3.8E-08 53.8 8.4 50 63-121 104-153 (254)
236 PRK14712 conjugal transfer nic 97.3 0.0038 8.3E-08 63.9 12.2 64 49-116 835-900 (1623)
237 KOG1513 Nuclear helicase MOP-3 97.2 0.00071 1.5E-08 62.7 6.1 156 49-215 264-454 (1300)
238 PF00004 AAA: ATPase family as 97.2 0.0053 1.2E-07 45.3 9.9 15 67-81 1-15 (132)
239 PRK06835 DNA replication prote 97.2 0.0051 1.1E-07 53.0 10.9 44 64-116 183-226 (329)
240 TIGR02785 addA_Gpos recombinat 97.2 0.0014 3.1E-08 66.7 8.6 124 49-185 1-126 (1232)
241 PF00308 Bac_DnaA: Bacterial d 97.2 0.0039 8.5E-08 50.6 9.5 105 66-217 36-142 (219)
242 cd01124 KaiC KaiC is a circadi 97.2 0.0059 1.3E-07 48.3 10.5 48 67-123 2-49 (187)
243 PRK09183 transposase/IS protei 97.1 0.022 4.7E-07 47.6 13.9 45 61-114 99-143 (259)
244 PRK08116 hypothetical protein; 97.1 0.0043 9.2E-08 52.0 9.5 43 66-117 116-158 (268)
245 PRK06893 DNA replication initi 97.1 0.0018 3.9E-08 53.1 7.2 44 173-216 90-135 (229)
246 PF05127 Helicase_RecD: Helica 97.1 0.00056 1.2E-08 52.8 3.9 125 68-217 1-125 (177)
247 PTZ00112 origin recognition co 97.1 0.0081 1.8E-07 57.5 11.9 22 67-89 784-805 (1164)
248 PRK14956 DNA polymerase III su 97.1 0.0032 6.9E-08 56.6 8.8 18 66-83 42-59 (484)
249 PRK00149 dnaA chromosomal repl 97.1 0.0056 1.2E-07 55.7 10.7 48 65-119 149-196 (450)
250 PRK14964 DNA polymerase III su 97.1 0.013 2.8E-07 53.2 12.7 20 65-84 36-55 (491)
251 PRK13709 conjugal transfer nic 97.1 0.0074 1.6E-07 62.6 12.3 126 49-214 967-1099(1747)
252 PHA02544 44 clamp loader, smal 97.1 0.0032 6.9E-08 54.5 8.7 40 174-213 100-139 (316)
253 COG3973 Superfamily I DNA and 97.1 0.003 6.5E-08 57.2 8.3 91 33-126 189-286 (747)
254 TIGR01547 phage_term_2 phage t 97.1 0.0051 1.1E-07 55.0 10.0 144 66-226 3-151 (396)
255 PRK00771 signal recognition pa 97.1 0.01 2.3E-07 53.1 11.7 52 175-226 176-228 (437)
256 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0039 8.4E-08 51.0 8.4 20 63-82 37-56 (226)
257 PRK08084 DNA replication initi 97.0 0.0073 1.6E-07 49.7 9.8 18 65-82 46-63 (235)
258 PRK05707 DNA polymerase III su 97.0 0.012 2.6E-07 50.8 11.4 41 49-90 3-47 (328)
259 COG4962 CpaF Flp pilus assembl 97.0 0.0032 6.8E-08 53.4 7.4 72 33-115 143-215 (355)
260 PF03354 Terminase_1: Phage Te 97.0 0.0056 1.2E-07 56.1 9.8 71 52-126 1-80 (477)
261 PRK14958 DNA polymerase III su 97.0 0.0039 8.5E-08 57.2 8.5 39 173-212 118-156 (509)
262 PRK07003 DNA polymerase III su 97.0 0.0037 8E-08 58.9 8.2 39 173-212 118-156 (830)
263 TIGR01425 SRP54_euk signal rec 96.9 0.021 4.5E-07 50.8 12.4 131 66-226 102-235 (429)
264 TIGR00362 DnaA chromosomal rep 96.9 0.0086 1.9E-07 53.7 10.3 37 66-108 138-174 (405)
265 PRK08903 DnaA regulatory inact 96.9 0.0066 1.4E-07 49.7 8.9 41 174-215 90-131 (227)
266 PRK06645 DNA polymerase III su 96.9 0.023 4.9E-07 52.0 13.0 19 65-83 44-62 (507)
267 cd01122 GP4d_helicase GP4d_hel 96.9 0.0054 1.2E-07 51.7 8.6 65 37-108 3-67 (271)
268 PF14617 CMS1: U3-containing 9 96.9 0.0027 5.9E-08 52.0 6.1 87 98-185 124-212 (252)
269 PRK14087 dnaA chromosomal repl 96.9 0.0067 1.4E-07 54.9 9.2 49 65-120 142-190 (450)
270 PRK14088 dnaA chromosomal repl 96.9 0.021 4.5E-07 51.7 12.1 38 65-108 131-168 (440)
271 PRK06731 flhF flagellar biosyn 96.8 0.037 8.1E-07 46.3 12.6 129 64-226 75-208 (270)
272 COG1444 Predicted P-loop ATPas 96.8 0.022 4.9E-07 53.8 12.3 160 32-217 197-358 (758)
273 PHA03333 putative ATPase subun 96.8 0.067 1.4E-06 50.0 15.1 69 50-125 170-241 (752)
274 PRK08533 flagellar accessory p 96.8 0.029 6.3E-07 46.0 11.7 53 62-123 22-74 (230)
275 TIGR00596 rad1 DNA repair prot 96.8 0.011 2.3E-07 57.1 10.4 80 150-229 7-92 (814)
276 PRK12323 DNA polymerase III su 96.8 0.011 2.4E-07 55.0 10.0 41 173-214 123-163 (700)
277 PRK09376 rho transcription ter 96.8 0.018 3.9E-07 50.3 10.7 90 1-91 81-195 (416)
278 PRK05986 cob(I)alamin adenolsy 96.8 0.0082 1.8E-07 46.9 7.9 144 62-223 20-166 (191)
279 TIGR02760 TraI_TIGR conjugativ 96.8 0.02 4.4E-07 60.9 13.1 62 48-116 1018-1084(1960)
280 KOG0383 Predicted helicase [Ge 96.8 0.0002 4.3E-09 66.4 -1.2 65 275-340 629-696 (696)
281 PRK14723 flhF flagellar biosyn 96.8 0.018 3.9E-07 54.8 11.4 128 64-226 185-317 (767)
282 PRK13833 conjugal transfer pro 96.8 0.0061 1.3E-07 52.2 7.7 65 40-112 121-186 (323)
283 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.017 3.8E-07 47.6 10.2 53 63-124 20-72 (237)
284 PLN03025 replication factor C 96.8 0.013 2.9E-07 50.6 10.0 38 174-212 99-136 (319)
285 PRK14086 dnaA chromosomal repl 96.8 0.015 3.3E-07 53.9 10.6 105 66-217 316-422 (617)
286 PRK12402 replication factor C 96.8 0.015 3.2E-07 50.8 10.3 40 173-213 124-163 (337)
287 TIGR03499 FlhF flagellar biosy 96.8 0.0062 1.3E-07 51.5 7.5 24 65-88 195-218 (282)
288 PF13173 AAA_14: AAA domain 96.8 0.015 3.3E-07 42.8 8.8 38 174-214 61-98 (128)
289 PRK14960 DNA polymerase III su 96.7 0.0078 1.7E-07 56.1 8.5 19 65-83 38-56 (702)
290 PF05496 RuvB_N: Holliday junc 96.7 0.0064 1.4E-07 48.7 6.9 18 65-82 51-68 (233)
291 PRK05563 DNA polymerase III su 96.7 0.038 8.3E-07 51.5 13.1 19 65-83 39-57 (559)
292 TIGR02782 TrbB_P P-type conjug 96.7 0.0073 1.6E-07 51.5 7.7 67 38-112 107-174 (299)
293 PRK12726 flagellar biosynthesi 96.7 0.03 6.5E-07 48.8 11.3 119 64-216 206-328 (407)
294 PRK07994 DNA polymerase III su 96.7 0.012 2.6E-07 55.2 9.7 17 67-83 41-57 (647)
295 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.043 9.3E-07 41.8 11.0 135 66-222 4-145 (159)
296 TIGR00064 ftsY signal recognit 96.7 0.042 9E-07 46.2 11.9 130 65-225 73-212 (272)
297 PF13177 DNA_pol3_delta2: DNA 96.7 0.014 3E-07 44.9 8.4 44 173-217 101-144 (162)
298 PRK13341 recombination factor 96.7 0.014 3.1E-07 55.8 10.1 18 65-82 53-70 (725)
299 PRK12422 chromosomal replicati 96.7 0.022 4.8E-07 51.5 10.7 41 65-114 142-182 (445)
300 PRK00411 cdc6 cell division co 96.6 0.021 4.5E-07 51.2 10.6 24 65-89 56-79 (394)
301 PRK11331 5-methylcytosine-spec 96.6 0.0087 1.9E-07 53.3 7.8 33 50-82 180-212 (459)
302 KOG1133 Helicase of the DEAD s 96.6 0.0025 5.4E-08 58.4 4.5 44 49-92 15-62 (821)
303 PRK14962 DNA polymerase III su 96.6 0.028 6E-07 51.2 11.1 18 66-83 38-55 (472)
304 KOG0391 SNF2 family DNA-depend 96.6 0.005 1.1E-07 59.8 6.4 70 276-345 1275-1346(1958)
305 TIGR02525 plasmid_TraJ plasmid 96.6 0.0076 1.7E-07 52.8 7.2 28 63-91 148-175 (372)
306 COG0630 VirB11 Type IV secreto 96.6 0.094 2E-06 45.0 13.6 68 34-112 114-182 (312)
307 TIGR02881 spore_V_K stage V sp 96.6 0.0093 2E-07 50.0 7.5 18 65-82 43-60 (261)
308 PRK13342 recombination factor 96.6 0.025 5.4E-07 50.9 10.6 18 65-82 37-54 (413)
309 PRK04195 replication factor C 96.6 0.026 5.5E-07 51.9 10.7 19 64-82 39-57 (482)
310 PRK14961 DNA polymerase III su 96.6 0.034 7.4E-07 49.0 11.1 17 66-82 40-56 (363)
311 PRK07764 DNA polymerase III su 96.5 0.015 3.4E-07 56.3 9.5 39 173-212 119-157 (824)
312 PF05621 TniB: Bacterial TniB 96.5 0.013 2.8E-07 49.1 7.8 113 65-207 62-180 (302)
313 TIGR00708 cobA cob(I)alamin ad 96.5 0.042 9.2E-07 42.3 10.0 50 173-222 96-147 (173)
314 PRK13894 conjugal transfer ATP 96.5 0.01 2.2E-07 51.0 7.2 69 36-112 121-190 (319)
315 KOG0741 AAA+-type ATPase [Post 96.5 0.031 6.8E-07 50.1 10.1 60 19-80 208-272 (744)
316 COG0470 HolB ATPase involved i 96.5 0.036 7.7E-07 48.1 10.8 40 173-213 108-147 (325)
317 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.042 9.1E-07 45.0 10.6 52 63-123 19-70 (229)
318 PRK08939 primosomal protein Dn 96.5 0.039 8.5E-07 47.2 10.5 24 64-87 156-179 (306)
319 PRK11823 DNA repair protein Ra 96.5 0.027 5.9E-07 50.9 10.1 91 64-188 80-170 (446)
320 PRK14949 DNA polymerase III su 96.4 0.038 8.3E-07 53.4 11.2 17 66-82 40-56 (944)
321 PRK14965 DNA polymerase III su 96.4 0.051 1.1E-06 51.0 12.0 39 173-212 118-156 (576)
322 PF06745 KaiC: KaiC; InterPro 96.4 0.0091 2E-07 48.9 6.4 133 63-214 18-159 (226)
323 KOG0991 Replication factor C, 96.4 0.007 1.5E-07 48.3 5.2 42 172-214 111-152 (333)
324 PRK13851 type IV secretion sys 96.4 0.0052 1.1E-07 53.2 5.0 44 60-112 158-201 (344)
325 cd01121 Sms Sms (bacterial rad 96.4 0.04 8.8E-07 48.4 10.5 90 64-187 82-171 (372)
326 PHA03368 DNA packaging termina 96.4 0.043 9.3E-07 51.0 10.7 133 63-214 253-389 (738)
327 PHA00012 I assembly protein 96.4 0.13 2.9E-06 43.6 12.7 56 172-228 79-140 (361)
328 PF01695 IstB_IS21: IstB-like 96.4 0.0056 1.2E-07 47.9 4.5 45 62-115 45-89 (178)
329 cd00984 DnaB_C DnaB helicase C 96.4 0.034 7.4E-07 46.0 9.4 41 61-108 10-50 (242)
330 PRK08769 DNA polymerase III su 96.3 0.056 1.2E-06 46.4 10.7 44 47-91 2-52 (319)
331 COG1618 Predicted nucleotide k 96.3 0.0058 1.3E-07 45.8 4.1 117 65-201 6-129 (179)
332 CHL00181 cbbX CbbX; Provisiona 96.3 0.027 5.8E-07 47.8 8.7 20 64-83 59-78 (287)
333 PRK12724 flagellar biosynthesi 96.3 0.073 1.6E-06 47.2 11.5 126 65-226 224-356 (432)
334 PF05876 Terminase_GpA: Phage 96.3 0.0097 2.1E-07 55.3 6.4 127 49-188 16-148 (557)
335 KOG0739 AAA+-type ATPase [Post 96.3 0.069 1.5E-06 44.5 10.4 43 66-120 168-210 (439)
336 PF01443 Viral_helicase1: Vira 96.3 0.0068 1.5E-07 49.9 4.8 14 67-80 1-14 (234)
337 PRK08691 DNA polymerase III su 96.3 0.029 6.4E-07 52.7 9.3 19 65-83 39-57 (709)
338 PRK06067 flagellar accessory p 96.3 0.082 1.8E-06 43.5 11.1 51 64-123 25-75 (234)
339 COG4626 Phage terminase-like p 96.3 0.033 7.1E-07 50.4 9.1 148 49-214 61-224 (546)
340 PRK05896 DNA polymerase III su 96.3 0.041 8.8E-07 51.1 10.0 19 65-83 39-57 (605)
341 PRK14969 DNA polymerase III su 96.2 0.064 1.4E-06 49.7 11.2 39 173-212 118-156 (527)
342 PRK14951 DNA polymerase III su 96.2 0.093 2E-06 49.3 12.2 18 66-83 40-57 (618)
343 TIGR00959 ffh signal recogniti 96.2 0.078 1.7E-06 47.5 11.3 22 66-87 101-122 (428)
344 COG2109 BtuR ATP:corrinoid ade 96.2 0.077 1.7E-06 41.0 9.6 141 67-224 31-174 (198)
345 PRK10867 signal recognition pa 96.2 0.08 1.7E-06 47.5 11.3 22 66-87 102-123 (433)
346 PRK14957 DNA polymerase III su 96.2 0.066 1.4E-06 49.5 11.1 39 173-212 118-156 (546)
347 PRK14955 DNA polymerase III su 96.2 0.13 2.9E-06 45.9 12.9 19 65-83 39-57 (397)
348 KOG0738 AAA+-type ATPase [Post 96.2 0.042 9.2E-07 47.4 9.0 39 65-115 246-284 (491)
349 PRK09111 DNA polymerase III su 96.2 0.038 8.2E-07 51.8 9.6 19 65-83 47-65 (598)
350 PRK14963 DNA polymerase III su 96.2 0.063 1.4E-06 49.3 10.9 23 66-89 38-60 (504)
351 COG3972 Superfamily I DNA and 96.2 0.038 8.1E-07 49.1 8.8 135 46-187 159-308 (660)
352 PHA00729 NTP-binding motif con 96.2 0.063 1.4E-06 43.4 9.5 18 65-82 18-35 (226)
353 TIGR02928 orc1/cdc6 family rep 96.2 0.027 5.9E-07 49.8 8.3 24 65-89 41-64 (365)
354 TIGR02524 dot_icm_DotB Dot/Icm 96.1 0.017 3.8E-07 50.4 6.8 27 63-90 133-159 (358)
355 TIGR03015 pepcterm_ATPase puta 96.1 0.062 1.3E-06 45.2 10.0 18 65-82 44-61 (269)
356 PRK13900 type IV secretion sys 96.1 0.0088 1.9E-07 51.7 4.8 43 61-112 157-199 (332)
357 TIGR02880 cbbX_cfxQ probable R 96.1 0.046 1E-06 46.3 9.0 19 64-82 58-76 (284)
358 PRK14959 DNA polymerase III su 96.1 0.05 1.1E-06 50.8 9.7 19 65-83 39-57 (624)
359 PRK10917 ATP-dependent DNA hel 96.1 0.031 6.7E-07 53.7 8.7 77 270-346 303-384 (681)
360 PRK07471 DNA polymerase III su 96.1 0.089 1.9E-06 46.3 10.8 42 173-215 140-181 (365)
361 TIGR03689 pup_AAA proteasome A 96.0 0.067 1.4E-06 49.0 10.2 17 64-80 216-232 (512)
362 COG0593 DnaA ATPase involved i 96.0 0.05 1.1E-06 47.9 9.0 45 174-218 175-221 (408)
363 PRK10416 signal recognition pa 96.0 0.27 5.9E-06 42.3 13.3 54 173-226 195-255 (318)
364 PRK14721 flhF flagellar biosyn 96.0 0.12 2.6E-06 46.1 11.3 22 64-85 191-212 (420)
365 PRK08506 replicative DNA helic 96.0 0.076 1.6E-06 48.5 10.5 143 61-214 189-351 (472)
366 PRK06995 flhF flagellar biosyn 96.0 0.034 7.4E-07 50.4 8.1 25 64-88 256-280 (484)
367 PRK06904 replicative DNA helic 96.0 0.099 2.1E-06 47.7 11.1 145 60-214 217-383 (472)
368 PF03237 Terminase_6: Terminas 96.0 0.24 5.2E-06 43.8 13.6 116 68-198 1-121 (384)
369 PRK09112 DNA polymerase III su 96.0 0.11 2.5E-06 45.3 11.0 41 173-214 140-180 (351)
370 PF00265 TK: Thymidine kinase; 96.0 0.0096 2.1E-07 46.3 4.0 36 67-110 4-39 (176)
371 KOG2028 ATPase related to the 96.0 0.029 6.4E-07 47.9 6.9 16 65-80 163-178 (554)
372 TIGR01420 pilT_fam pilus retra 96.0 0.026 5.7E-07 49.3 7.0 43 63-112 121-163 (343)
373 PRK11034 clpA ATP-dependent Cl 95.9 0.12 2.6E-06 49.9 11.9 18 64-81 207-224 (758)
374 PRK05973 replicative DNA helic 95.9 0.024 5.2E-07 46.3 6.2 83 32-123 23-114 (237)
375 PF03266 NTPase_1: NTPase; In 95.9 0.0084 1.8E-07 46.4 3.4 25 66-91 1-25 (168)
376 PF02572 CobA_CobO_BtuR: ATP:c 95.9 0.15 3.4E-06 39.3 10.2 139 66-222 5-146 (172)
377 cd03115 SRP The signal recogni 95.9 0.18 3.9E-06 39.2 11.0 18 67-84 3-20 (173)
378 PRK04841 transcriptional regul 95.9 0.12 2.6E-06 51.7 12.3 42 174-215 121-162 (903)
379 PRK14952 DNA polymerase III su 95.9 0.054 1.2E-06 50.5 8.9 18 66-83 37-54 (584)
380 KOG0741 AAA+-type ATPase [Post 95.8 0.2 4.4E-06 45.2 11.8 70 32-111 494-575 (744)
381 TIGR03600 phage_DnaB phage rep 95.8 0.069 1.5E-06 48.2 9.4 122 57-188 187-319 (421)
382 PTZ00454 26S protease regulato 95.8 0.13 2.8E-06 45.8 10.8 55 24-81 139-196 (398)
383 TIGR02639 ClpA ATP-dependent C 95.8 0.22 4.8E-06 48.4 13.3 32 50-81 183-220 (731)
384 COG1474 CDC6 Cdc6-related prot 95.8 0.27 5.8E-06 43.3 12.6 26 65-91 43-68 (366)
385 PRK14950 DNA polymerase III su 95.8 0.26 5.7E-06 46.5 13.4 18 65-82 39-56 (585)
386 KOG0744 AAA+-type ATPase [Post 95.8 0.091 2E-06 44.3 9.0 23 65-88 178-200 (423)
387 COG0552 FtsY Signal recognitio 95.8 0.33 7E-06 41.4 12.3 131 66-224 141-278 (340)
388 PRK14954 DNA polymerase III su 95.8 0.13 2.8E-06 48.5 11.1 19 65-83 39-57 (620)
389 PHA00350 putative assembly pro 95.8 0.24 5.3E-06 43.7 12.1 24 67-90 4-28 (399)
390 PRK10436 hypothetical protein; 95.8 0.022 4.8E-07 51.5 5.9 38 51-89 203-242 (462)
391 COG2804 PulE Type II secretory 95.8 0.017 3.8E-07 51.6 5.1 40 51-91 243-284 (500)
392 TIGR00643 recG ATP-dependent D 95.7 0.044 9.5E-07 52.2 8.2 75 269-343 276-355 (630)
393 PRK06620 hypothetical protein; 95.7 0.033 7.1E-07 45.0 6.3 16 65-80 45-60 (214)
394 PRK13764 ATPase; Provisional 95.7 0.027 5.9E-07 52.4 6.5 27 63-90 256-282 (602)
395 PRK14953 DNA polymerase III su 95.7 0.14 3E-06 47.0 10.9 18 66-83 40-57 (486)
396 COG2255 RuvB Holliday junction 95.7 0.052 1.1E-06 44.9 7.2 18 65-82 53-70 (332)
397 TIGR00678 holB DNA polymerase 95.7 0.12 2.7E-06 40.8 9.5 25 65-90 15-39 (188)
398 TIGR00767 rho transcription te 95.7 0.1 2.2E-06 46.0 9.3 29 61-90 165-193 (415)
399 COG0464 SpoVK ATPases of the A 95.6 0.29 6.4E-06 45.2 13.0 61 22-85 234-297 (494)
400 PRK14873 primosome assembly pr 95.6 0.078 1.7E-06 50.4 9.2 72 266-337 176-250 (665)
401 PRK06647 DNA polymerase III su 95.6 0.13 2.8E-06 48.0 10.5 18 65-82 39-56 (563)
402 PRK06964 DNA polymerase III su 95.6 0.24 5.3E-06 43.0 11.4 41 50-91 2-47 (342)
403 PRK06871 DNA polymerase III su 95.6 0.083 1.8E-06 45.5 8.5 41 50-91 3-50 (325)
404 PRK14971 DNA polymerase III su 95.6 0.33 7.1E-06 45.9 13.1 17 66-82 41-57 (614)
405 cd01130 VirB11-like_ATPase Typ 95.6 0.036 7.8E-07 43.8 5.9 44 42-88 4-48 (186)
406 PRK07940 DNA polymerase III su 95.6 0.068 1.5E-06 47.4 8.2 40 173-214 116-155 (394)
407 PRK08451 DNA polymerase III su 95.6 0.12 2.6E-06 47.6 9.9 39 173-212 116-154 (535)
408 PRK07993 DNA polymerase III su 95.6 0.067 1.4E-06 46.4 7.9 42 49-91 2-50 (334)
409 TIGR01243 CDC48 AAA family ATP 95.5 0.13 2.8E-06 50.0 10.7 18 63-80 211-228 (733)
410 PRK00440 rfc replication facto 95.5 0.27 5.9E-06 42.5 11.8 39 174-213 102-140 (319)
411 PRK07414 cob(I)yrinic acid a,c 95.5 0.29 6.4E-06 37.9 10.4 140 65-222 22-165 (178)
412 COG5008 PilU Tfp pilus assembl 95.5 0.025 5.5E-07 46.1 4.8 20 63-82 126-145 (375)
413 PRK07133 DNA polymerase III su 95.5 0.13 2.9E-06 48.9 10.2 18 66-83 42-59 (725)
414 TIGR01243 CDC48 AAA family ATP 95.5 0.094 2E-06 51.0 9.6 18 64-81 487-504 (733)
415 PRK08840 replicative DNA helic 95.5 0.22 4.8E-06 45.3 11.3 151 54-214 207-378 (464)
416 TIGR02655 circ_KaiC circadian 95.5 0.22 4.8E-06 45.8 11.4 59 57-124 251-314 (484)
417 PF03796 DnaB_C: DnaB-like hel 95.4 0.074 1.6E-06 44.5 7.7 141 61-214 16-179 (259)
418 PRK05580 primosome assembly pr 95.4 0.097 2.1E-06 50.2 9.3 61 276-336 189-250 (679)
419 cd01129 PulE-GspE PulE/GspE Th 95.4 0.041 9E-07 46.0 5.9 45 41-89 58-104 (264)
420 PRK03992 proteasome-activating 95.4 0.16 3.4E-06 45.3 9.9 18 64-81 165-182 (389)
421 PF00437 T2SE: Type II/IV secr 95.4 0.024 5.2E-07 47.8 4.6 43 62-112 125-167 (270)
422 TIGR00595 priA primosomal prot 95.3 0.077 1.7E-06 48.9 7.9 61 276-336 24-85 (505)
423 TIGR02012 tigrfam_recA protein 95.3 0.046 1E-06 46.8 6.1 44 63-114 54-97 (321)
424 PRK14948 DNA polymerase III su 95.3 0.25 5.5E-06 46.7 11.4 19 65-83 39-57 (620)
425 TIGR03346 chaperone_ClpB ATP-d 95.3 0.31 6.8E-06 48.2 12.5 32 50-81 174-211 (852)
426 PF05729 NACHT: NACHT domain 95.3 0.21 4.6E-06 38.2 9.4 26 66-92 2-27 (166)
427 PRK08699 DNA polymerase III su 95.3 0.22 4.9E-06 43.0 10.2 40 50-90 2-46 (325)
428 COG1110 Reverse gyrase [DNA re 95.3 0.04 8.8E-07 53.3 6.0 62 276-337 124-191 (1187)
429 COG2812 DnaX DNA polymerase II 95.3 0.03 6.5E-07 50.9 5.0 39 172-214 117-156 (515)
430 PRK07004 replicative DNA helic 95.3 0.14 3E-06 46.6 9.3 143 61-214 210-373 (460)
431 TIGR02397 dnaX_nterm DNA polym 95.3 0.16 3.4E-06 44.8 9.6 18 65-82 37-54 (355)
432 COG2909 MalT ATP-dependent tra 95.3 0.12 2.6E-06 49.3 8.8 41 175-215 130-170 (894)
433 PRK10865 protein disaggregatio 95.2 0.3 6.4E-06 48.3 12.0 33 49-81 178-216 (857)
434 PRK06305 DNA polymerase III su 95.2 0.3 6.4E-06 44.4 11.2 19 65-83 40-58 (451)
435 TIGR00416 sms DNA repair prote 95.2 0.25 5.5E-06 44.9 10.8 91 64-188 94-184 (454)
436 TIGR02868 CydC thiol reductant 95.2 0.056 1.2E-06 50.5 6.8 19 61-79 358-376 (529)
437 COG1200 RecG RecG-like helicas 95.2 0.1 2.2E-06 48.5 8.1 81 265-345 299-384 (677)
438 PRK08006 replicative DNA helic 95.2 0.28 6E-06 44.8 10.9 146 59-214 219-385 (471)
439 TIGR01241 FtsH_fam ATP-depende 95.2 0.24 5.2E-06 45.8 10.7 55 24-81 49-105 (495)
440 TIGR02538 type_IV_pilB type IV 95.2 0.044 9.5E-07 51.3 5.9 44 42-89 295-340 (564)
441 smart00492 HELICc3 helicase su 95.2 0.065 1.4E-06 40.1 5.7 56 290-345 4-66 (141)
442 TIGR00665 DnaB replicative DNA 95.1 0.18 3.9E-06 45.8 9.6 143 61-214 192-354 (434)
443 PRK04328 hypothetical protein; 95.1 0.049 1.1E-06 45.2 5.5 53 63-124 22-74 (249)
444 CHL00095 clpC Clp protease ATP 95.1 0.31 6.8E-06 48.0 11.8 17 65-81 201-217 (821)
445 TIGR00580 mfd transcription-re 95.1 0.1 2.2E-06 51.6 8.3 74 272-345 495-573 (926)
446 cd01128 rho_factor Transcripti 95.1 0.084 1.8E-06 43.7 6.7 19 61-79 13-31 (249)
447 PRK09354 recA recombinase A; P 95.1 0.061 1.3E-06 46.6 6.0 43 64-114 60-102 (349)
448 cd01131 PilT Pilus retraction 95.0 0.039 8.5E-07 44.1 4.6 37 66-109 3-39 (198)
449 COG3267 ExeA Type II secretory 95.0 0.15 3.3E-06 41.5 7.7 45 62-115 48-93 (269)
450 COG1132 MdlB ABC-type multidru 95.0 0.071 1.5E-06 50.3 6.8 34 172-205 481-514 (567)
451 PRK05748 replicative DNA helic 94.9 0.21 4.6E-06 45.5 9.6 143 61-214 200-364 (448)
452 COG1198 PriA Primosomal protei 94.9 0.11 2.4E-06 49.5 7.8 62 276-337 244-306 (730)
453 PRK08760 replicative DNA helic 94.9 0.17 3.7E-06 46.3 8.8 116 61-187 226-352 (476)
454 TIGR03819 heli_sec_ATPase heli 94.9 0.09 1.9E-06 45.7 6.6 64 38-112 153-217 (340)
455 TIGR00635 ruvB Holliday juncti 94.8 0.17 3.7E-06 43.5 8.4 17 65-81 31-47 (305)
456 PF06733 DEAD_2: DEAD_2; Inte 94.8 0.014 3.1E-07 45.5 1.5 44 145-188 114-159 (174)
457 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.092 2E-06 43.9 6.4 38 63-108 35-72 (259)
458 COG0378 HypB Ni2+-binding GTPa 94.8 0.59 1.3E-05 36.6 10.1 52 175-226 144-196 (202)
459 TIGR03345 VI_ClpV1 type VI sec 94.8 0.28 6.1E-06 48.4 10.5 40 49-89 187-232 (852)
460 TIGR02533 type_II_gspE general 94.8 0.062 1.3E-06 49.2 5.6 39 51-90 227-267 (486)
461 PF12846 AAA_10: AAA-like doma 94.7 0.044 9.6E-07 46.9 4.5 41 64-112 1-41 (304)
462 COG1219 ClpX ATP-dependent pro 94.6 0.027 5.8E-07 47.3 2.7 26 64-91 97-122 (408)
463 TIGR02858 spore_III_AA stage I 94.6 0.7 1.5E-05 38.8 11.1 15 65-79 112-126 (270)
464 TIGR02788 VirB11 P-type DNA tr 94.6 0.06 1.3E-06 46.3 5.0 27 61-88 141-167 (308)
465 TIGR02640 gas_vesic_GvpN gas v 94.6 0.061 1.3E-06 45.1 4.9 26 57-82 14-39 (262)
466 KOG0742 AAA+-type ATPase [Post 94.6 0.1 2.2E-06 45.4 6.1 48 28-80 353-400 (630)
467 PRK06090 DNA polymerase III su 94.6 0.28 6.1E-06 42.2 8.8 41 49-90 3-50 (319)
468 KOG2228 Origin recognition com 94.6 0.53 1.2E-05 40.2 10.0 55 160-214 123-180 (408)
469 COG0542 clpA ATP-binding subun 94.5 0.34 7.3E-06 46.5 9.9 31 52-82 494-539 (786)
470 PRK05636 replicative DNA helic 94.5 0.27 6E-06 45.2 9.0 115 62-187 263-388 (505)
471 smart00491 HELICc2 helicase su 94.5 0.089 1.9E-06 39.4 4.9 57 289-345 3-67 (142)
472 PRK05800 cobU adenosylcobinami 94.4 0.14 3E-06 39.7 6.1 47 66-123 3-49 (170)
473 cd03239 ABC_SMC_head The struc 94.4 0.091 2E-06 41.1 5.1 42 173-214 115-157 (178)
474 COG0210 UvrD Superfamily I DNA 94.4 0.13 2.9E-06 49.4 7.1 71 49-125 2-72 (655)
475 KOG0058 Peptide exporter, ABC 94.4 0.12 2.6E-06 48.4 6.4 138 60-206 490-654 (716)
476 COG0467 RAD55 RecA-superfamily 94.3 0.098 2.1E-06 43.8 5.5 56 62-126 21-76 (260)
477 PHA03372 DNA packaging termina 94.3 1.3 2.8E-05 41.1 12.7 142 45-214 187-336 (668)
478 PF01637 Arch_ATPase: Archaeal 94.3 0.25 5.4E-06 40.3 7.9 25 64-89 20-44 (234)
479 cd01126 TraG_VirD4 The TraG/Tr 94.2 0.069 1.5E-06 47.6 4.6 47 66-122 1-47 (384)
480 KOG0733 Nuclear AAA ATPase (VC 94.2 0.87 1.9E-05 42.1 11.1 54 24-80 505-561 (802)
481 KOG1806 DEAD box containing he 94.2 0.068 1.5E-06 51.6 4.5 69 49-123 738-806 (1320)
482 CHL00176 ftsH cell division pr 94.1 0.46 1E-05 45.1 10.0 17 65-81 217-233 (638)
483 PRK13897 type IV secretion sys 94.1 0.12 2.5E-06 48.6 6.0 58 65-136 159-216 (606)
484 PF02534 T4SS-DNA_transf: Type 94.1 0.099 2.1E-06 48.0 5.6 49 65-123 45-93 (469)
485 PRK06321 replicative DNA helic 94.1 0.71 1.5E-05 42.2 10.7 143 61-214 223-388 (472)
486 KOG0743 AAA+-type ATPase [Post 94.0 0.061 1.3E-06 47.4 3.7 58 27-88 198-258 (457)
487 PRK09165 replicative DNA helic 94.0 0.49 1.1E-05 43.7 9.7 123 61-187 214-354 (497)
488 COG0541 Ffh Signal recognition 94.0 0.61 1.3E-05 41.3 9.6 131 66-226 102-235 (451)
489 TIGR03880 KaiC_arch_3 KaiC dom 94.0 0.16 3.5E-06 41.4 6.0 52 63-123 15-66 (224)
490 cd01125 repA Hexameric Replica 93.9 0.84 1.8E-05 37.6 10.2 43 65-107 2-48 (239)
491 KOG2227 Pre-initiation complex 93.9 0.65 1.4E-05 41.4 9.6 40 51-91 155-201 (529)
492 PF04665 Pox_A32: Poxvirus A32 93.9 0.099 2.2E-06 42.7 4.5 40 61-108 9-49 (241)
493 KOG0732 AAA+-type ATPase conta 93.9 0.23 4.9E-06 48.9 7.5 59 24-82 259-317 (1080)
494 PRK12608 transcription termina 93.8 0.39 8.4E-06 42.0 8.2 39 52-91 118-159 (380)
495 PHA02535 P terminase ATPase su 93.8 0.63 1.4E-05 43.1 9.9 87 32-125 121-207 (581)
496 cd00544 CobU Adenosylcobinamid 93.7 0.17 3.8E-06 39.1 5.4 46 67-123 2-47 (169)
497 PRK05595 replicative DNA helic 93.7 0.21 4.4E-06 45.5 6.7 142 61-214 198-360 (444)
498 COG4987 CydC ABC-type transpor 93.7 0.15 3.2E-06 46.1 5.5 43 172-214 490-532 (573)
499 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.6 0.36 7.8E-06 36.3 6.9 30 173-202 87-116 (144)
500 PRK07399 DNA polymerase III su 93.6 0.75 1.6E-05 39.6 9.6 57 155-214 106-162 (314)
No 1
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.8e-55 Score=398.84 Aligned_cols=342 Identities=64% Similarity=1.047 Sum_probs=297.8
Q ss_pred CChHHHHHhhhccceee-ccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhH
Q 019041 1 MTETEVKMYRARREITV-EGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~ 79 (347)
|++++++.++++..+.+ ++.+.|.|...|+++++++++.+.|+..||..|+++|.++|+.++.|+++++++|||||||+
T Consensus 103 ~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTl 182 (545)
T PTZ00110 103 LSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTL 182 (545)
T ss_pred CCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHH
Confidence 67899999999998886 78889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChH
Q 019041 80 SYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~ 159 (347)
+|++|++.++...+....+.++.+|||+|+++|+.|+.+.+.+++...++++..++++.........+..+++|+|+||+
T Consensus 183 aylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPg 262 (545)
T PTZ00110 183 AFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPG 262 (545)
T ss_pred HHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHH
Confidence 99999998876654333344789999999999999999999999988899999999999887777778888999999999
Q ss_pred HHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcC-CCeEEEeccc
Q 019041 160 RLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLR-NPYKVIIGSL 238 (347)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~-~~~~~~~~~~ 238 (347)
+|.+.+......+.++++||+||||++.+.+|...+..++..+++.+|++++|||++..+..+.+.++. .+..+.+...
T Consensus 263 rL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~ 342 (545)
T PTZ00110 263 RLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL 342 (545)
T ss_pred HHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC
Confidence 999999888888899999999999999999999999999999999999999999999998888888775 4555555443
Q ss_pred ccccccccceeEEEecchhccccHHHHHHHHHHHhhc-CCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHH
Q 019041 239 ELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERD 317 (347)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~ 317 (347)
...........+.......+.. .+..++.... .++++||||++++.++.+++.|...|+.+..+||++++++|.
T Consensus 343 ~l~~~~~i~q~~~~~~~~~k~~-----~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~ 417 (545)
T PTZ00110 343 DLTACHNIKQEVFVVEEHEKRG-----KLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERT 417 (545)
T ss_pred ccccCCCeeEEEEEEechhHHH-----HHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHH
Confidence 3333334444444444333332 4555555544 577999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 318 WVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 318 ~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+++.|++|+.+|||||+++++|||+|+|+
T Consensus 418 ~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 418 WVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 999999999999999999999999999985
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-55 Score=378.67 Aligned_cols=315 Identities=64% Similarity=1.067 Sum_probs=288.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhc-CCCccCCCCCEEEEE
Q 019041 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSA-QPRLVQGEGPIVLVL 106 (347)
Q Consensus 28 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~~~~~~lil 106 (347)
.|+.+++++...+.++..||..|+|+|.+.|+.++.|++++..+.||||||++|++|++.++.. ......++++++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 5677788888999999999999999999999999999999999999999999999999999987 344445568999999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhh
Q 019041 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (347)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (347)
+||++|+.|+...+.+++....++..+++||.+...+.+.+.++.+|+|+||+++.++++....+++.+.++|+|||+++
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHhhc-CCCccEEEEEeecchhHHHHHHHhcCCCeEEEeccc-ccccccccceeEEEecchhccccHHH
Q 019041 187 LDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSL-ELKANQSINQVVEVVTEAEKYNSMFI 264 (347)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (347)
++.+|...++.++..+ ++..|.+++|||++..++.+...++.+|..+.+... +.....++.+....+....+..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~---- 327 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLR---- 327 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHH----
Confidence 9999999999999999 666689999999999999999999999998887755 5566677777777777555554
Q ss_pred HHHHHHHHhhc--CCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCC
Q 019041 265 CRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLG 342 (347)
Q Consensus 265 ~~l~~~~~~~~--~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 342 (347)
.+..++.+.. .++|+||||++++.|..++..|.+.++++..+||+.++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 328 -~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLD 406 (519)
T KOG0331|consen 328 -KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLD 406 (519)
T ss_pred -HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCC
Confidence 5666666654 5569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCC
Q 019041 343 RITVC 347 (347)
Q Consensus 343 ip~v~ 347 (347)
+|+|+
T Consensus 407 i~dV~ 411 (519)
T KOG0331|consen 407 VPDVD 411 (519)
T ss_pred Ccccc
Confidence 99985
No 3
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.2e-52 Score=377.90 Aligned_cols=340 Identities=34% Similarity=0.561 Sum_probs=289.7
Q ss_pred CChHHHHHhhhccceeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
|+++++..++++.++.+.+.+.|.|+..|+.+++++.+.++|...||..|+++|.++++.++.|+++++++|||||||++
T Consensus 95 ~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTla 174 (518)
T PLN00206 95 LSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTAS 174 (518)
T ss_pred CCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCC--ccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeCh
Q 019041 81 YLLPAFVHVSAQPR--LVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATP 158 (347)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~ 158 (347)
|++|++.++..... .....++++||++|+++|+.|+.+.++.+....++.+..+.||.........+..+++|+|+||
T Consensus 175 yllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TP 254 (518)
T PLN00206 175 FLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTP 254 (518)
T ss_pred HHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECH
Confidence 99999988754211 1122477999999999999999999999988888888999999887777777778899999999
Q ss_pred HHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEeccc
Q 019041 159 GRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSL 238 (347)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~ 238 (347)
+++.+.+......+++++++|+||||++.+.+|...+..++..+ +..|++++|||++..+..+...+..++..+.....
T Consensus 255 grL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~ 333 (518)
T PLN00206 255 GRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNP 333 (518)
T ss_pred HHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999998888888999999999999999999999999998877 56899999999999999898888888776665543
Q ss_pred ccccccccceeEEEecchhccccHHHHHHHHHHHhhc-CCCeEEEEecCcccHHHHHHHHhh-CCCCceeecCCCCHHHH
Q 019041 239 ELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRM-DGWPALSIHGDKNQSER 316 (347)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~lvf~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~r 316 (347)
.. ................+. ..+.+++.... ..+++||||+++..++.+++.|.. .|+.+..+||++++.+|
T Consensus 334 ~~-~~~~v~q~~~~~~~~~k~-----~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR 407 (518)
T PLN00206 334 NR-PNKAVKQLAIWVETKQKK-----QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKER 407 (518)
T ss_pred CC-CCcceeEEEEeccchhHH-----HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHH
Confidence 32 222223333333333222 24555554432 235899999999999999999975 68999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 317 DWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 317 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
..+++.|++|+.+|||||+++++|+|+|+|+
T Consensus 408 ~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 408 REVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 9999999999999999999999999999985
No 4
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-52 Score=337.96 Aligned_cols=312 Identities=38% Similarity=0.569 Sum_probs=283.4
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEE
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (347)
.....|.+++++|.+.+++...|+..|+++|+++++..+.|++++..|.||||||.+|++|+++++.+++. ..++
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~ 132 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFA 132 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceE
Confidence 45566999999999999999999999999999999999999999999999999999999999999999775 6799
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHh-cCCCCCCcccEEEEec
Q 019041 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLE-AQHTNLRRVTYLVLDE 182 (347)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~-~~~~~~~~~~~iIvDE 182 (347)
+|++|+++|+.|+.+.+..++...|+++..+-||...-.+...+.+.++|+|+||+.|++.+. .+.+.+..+.++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 999999999999999999999999999999999998888888888899999999999999998 5667889999999999
Q ss_pred chhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccH
Q 019041 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSM 262 (347)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (347)
|+++++.+|...+..+++.++..+|.+++|||++..+..+...-+..|..+.+.... .........+.+.....+..
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~-- 289 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDT-- 289 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccch--
Confidence 999999999999999999999999999999999999999998888888887765443 33444555666666666655
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCC
Q 019041 263 FICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLG 342 (347)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 342 (347)
.|..++.+. .+..+||||++...+.+++-.|...|+.+..+||.|+++.|--+++.|++|..+|||||+++++|+|
T Consensus 290 ---yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLD 365 (476)
T KOG0330|consen 290 ---YLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLD 365 (476)
T ss_pred ---hHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCC
Confidence 566666654 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCC
Q 019041 343 RITVC 347 (347)
Q Consensus 343 ip~v~ 347 (347)
+|.|.
T Consensus 366 ip~Vd 370 (476)
T KOG0330|consen 366 IPHVD 370 (476)
T ss_pred CCCce
Confidence 99874
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-50 Score=358.80 Aligned_cols=319 Identities=36% Similarity=0.535 Sum_probs=268.2
Q ss_pred CCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCcc--CCC
Q 019041 22 VPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV--QGE 99 (347)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~--~~~ 99 (347)
++-+...|+++++++.+.++|..+||..|+++|.++++.++.|++++++||||||||++|++++++.+...+... ...
T Consensus 3 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~ 82 (423)
T PRK04837 3 THLTEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVN 82 (423)
T ss_pred ccCCCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccC
Confidence 445557899999999999999999999999999999999999999999999999999999999998886543221 123
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEE
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLV 179 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 179 (347)
++++|||+|+++|+.|+.+.+..+....++.+..++|+.........+..+++|+|+||+++.+.+......+++++++|
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lV 162 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVV 162 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEE
Confidence 57899999999999999999999988889999999999887777677777899999999999999988888899999999
Q ss_pred EecchhhhccCChHHHHHHHhhcCC--CccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchh
Q 019041 180 LDEADRMLDMGFEPQIRKIVTQIRP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (347)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (347)
+||||++.+.+|...+..++..++. ..+.+++|||++.....+....+.+|..+.+...... .......+.......
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~-~~~i~~~~~~~~~~~ 241 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKT-GHRIKEELFYPSNEE 241 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcC-CCceeEEEEeCCHHH
Confidence 9999999999999999999888864 4567899999999888888888888877665433321 122222222222222
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019041 258 KYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 337 (347)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 337 (347)
+ ...+..++.. ...+++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 242 k-----~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~ 315 (423)
T PRK04837 242 K-----MRLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVA 315 (423)
T ss_pred H-----HHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechh
Confidence 2 2244455544 245799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCC
Q 019041 338 ARGLGRITVC 347 (347)
Q Consensus 338 ~~Gidip~v~ 347 (347)
++|+|+|+|+
T Consensus 316 ~rGiDip~v~ 325 (423)
T PRK04837 316 ARGLHIPAVT 325 (423)
T ss_pred hcCCCccccC
Confidence 9999999984
No 6
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.6e-51 Score=345.08 Aligned_cols=339 Identities=47% Similarity=0.745 Sum_probs=307.6
Q ss_pred CChHHHHHhhhccceeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
|++++|+-|++.+.+.+++...|+|+.+|++.++|.++++.+...|+..|+|+|+.+++..++++++|..+.||||||.+
T Consensus 219 m~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaa 298 (673)
T KOG0333|consen 219 MTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAA 298 (673)
T ss_pred cCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCcccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCc----cCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEe
Q 019041 81 YLLPAFVHVSAQPRL----VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIA 156 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 156 (347)
|+++++..+...+.. +...++.++++.|+++|+.|+.++-.+|+..++++++.+.||.+-+++-..+..+++|+|+
T Consensus 299 f~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceivia 378 (673)
T KOG0333|consen 299 FLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIA 378 (673)
T ss_pred chhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeec
Confidence 999999999877632 2234899999999999999999999999999999999999999888776777889999999
Q ss_pred ChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCC-------------------------CccEEEE
Q 019041 157 TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP-------------------------DRQTLYW 211 (347)
Q Consensus 157 T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~-------------------------~~~~i~l 211 (347)
||..|.+.+.+.++-++.+.++|+||++.+.+.+|.+.+..++..++. -.|.+.|
T Consensus 379 tPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mf 458 (673)
T KOG0333|consen 379 TPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMF 458 (673)
T ss_pred CchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEE
Confidence 999999999999999999999999999999999999999999988852 1578999
Q ss_pred EeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHH
Q 019041 212 SATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCD 291 (347)
Q Consensus 212 saT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~ 291 (347)
|||+++.+..+++.|+..|..+.+....... +-+...+.......+.. .|.+++... -..++|||+|.++.|+
T Consensus 459 tatm~p~verlar~ylr~pv~vtig~~gk~~-~rveQ~v~m~~ed~k~k-----kL~eil~~~-~~ppiIIFvN~kk~~d 531 (673)
T KOG0333|consen 459 TATMPPAVERLARSYLRRPVVVTIGSAGKPT-PRVEQKVEMVSEDEKRK-----KLIEILESN-FDPPIIIFVNTKKGAD 531 (673)
T ss_pred ecCCChHHHHHHHHHhhCCeEEEeccCCCCc-cchheEEEEecchHHHH-----HHHHHHHhC-CCCCEEEEEechhhHH
Confidence 9999999999999999999999887665433 33455555666665544 677777775 4569999999999999
Q ss_pred HHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 292 QVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 292 ~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
.+++.|.+.|+.+..+||+-++++|..+++.|++|..+|||||+++++|||||+|
T Consensus 532 ~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnV 586 (673)
T KOG0333|consen 532 ALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNV 586 (673)
T ss_pred HHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999997
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-50 Score=363.38 Aligned_cols=312 Identities=43% Similarity=0.696 Sum_probs=277.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEE
Q 019041 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil 106 (347)
..|+.+++++.+.+++.+.||..|+++|..+++.++.|+++++.|+||||||.+|++|+++.+..... .....+||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~---~~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE---RKYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc---cCCCceEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999774211 001129999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh
Q 019041 107 APTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (347)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (347)
+||++|+.|+.+.+..++... ++++..++||.+...+...+..+++|+|+||+++++++....+.++.+.++|+|||++
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999998888888888899999999999999999999999999999999999
Q ss_pred hhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEeccccc-ccccccceeEEEecchh-ccccHH
Q 019041 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLEL-KANQSINQVVEVVTEAE-KYNSMF 263 (347)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 263 (347)
+++.+|...+..++...+..+|.+++|||++..+..+.+.++.+|..+.+..... .....+.+.+..+.... +..
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~--- 262 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE--- 262 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH---
Confidence 9999999999999999999999999999999999999999999998777763332 24555666666666554 433
Q ss_pred HHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCC
Q 019041 264 ICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGR 343 (347)
Q Consensus 264 ~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 343 (347)
.+..++... ...++||||+++..++.++..|...|+.+..+||++++.+|.++++.|++|+.+|||||+++++|||+
T Consensus 263 --~L~~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi 339 (513)
T COG0513 263 --LLLKLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDI 339 (513)
T ss_pred --HHHHHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCc
Confidence 555666554 33479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCC
Q 019041 344 ITVC 347 (347)
Q Consensus 344 p~v~ 347 (347)
|+|.
T Consensus 340 ~~v~ 343 (513)
T COG0513 340 PDVS 343 (513)
T ss_pred cccc
Confidence 9974
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.7e-50 Score=361.41 Aligned_cols=309 Identities=39% Similarity=0.601 Sum_probs=268.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE
Q 019041 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (347)
Q Consensus 26 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li 105 (347)
+..|+.+++++.+.+++..+||..|+++|.++++.+++|++++++||||+|||++|++++++.+..... ..++||
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~-----~~~~li 77 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRF-----RVQALV 77 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccC-----CceEEE
Confidence 456999999999999999999999999999999999999999999999999999999999998764321 557999
Q ss_pred EcCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecch
Q 019041 106 LAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (347)
++|+++|+.|+.+.++.+.... ++++..++|+.+...+...+..+++|+|+||+++.+.+......+++++++|+||||
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 9999999999999999886644 788999999998888877788889999999999999998888888999999999999
Q ss_pred hhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHH
Q 019041 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFI 264 (347)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (347)
++.+.+|...+..++..+++..|++++|||++.....+...++..|..+.+..... .......+.......+ .
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~k-----~ 230 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD--LPAIEQRFYEVSPDER-----L 230 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC--CCCeeEEEEEeCcHHH-----H
Confidence 99999999999999999999999999999999999999999988888776654332 2223344444443332 2
Q ss_pred HHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 265 CRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 265 ~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
..+..++.. ...+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 231 ~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 231 PALQRLLLH-HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIK 309 (460)
T ss_pred HHHHHHHHh-cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchh
Confidence 245555543 3456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 019041 345 TVC 347 (347)
Q Consensus 345 ~v~ 347 (347)
+++
T Consensus 310 ~v~ 312 (460)
T PRK11776 310 ALE 312 (460)
T ss_pred cCC
Confidence 874
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.1e-50 Score=359.48 Aligned_cols=313 Identities=38% Similarity=0.623 Sum_probs=265.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCcc-CCCCCEEEEE
Q 019041 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV-QGEGPIVLVL 106 (347)
Q Consensus 28 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~-~~~~~~~lil 106 (347)
.|+++++++.+.+.|.+.||..|+++|.++++.+++++++++++|||+|||++|++++++.+....... .....++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 699999999999999999999999999999999999999999999999999999999999886543211 1123589999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhh
Q 019041 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (347)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (347)
+|+++|+.|+.+.+..+....++.+..+.|+.........+...++|+|+||+++++........+++++++|+||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888899999999998877777777778999999999999998888888899999999999999
Q ss_pred hccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHH
Q 019041 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICR 266 (347)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (347)
.+.+|...+..++..++...|.+++|||++.....+...++.++..+.+...... .......+.......+. ..
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~k~-----~~ 235 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTA-SEQVTQHVHFVDKKRKR-----EL 235 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccccc-ccceeEEEEEcCHHHHH-----HH
Confidence 9999999999999999888999999999999888888888888877665433221 22223333333322221 12
Q ss_pred HHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 267 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 267 l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
+..++. ....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+|
T Consensus 236 l~~l~~-~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v 314 (456)
T PRK10590 236 LSQMIG-KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 (456)
T ss_pred HHHHHH-cCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccC
Confidence 333333 3345689999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 019041 347 C 347 (347)
Q Consensus 347 ~ 347 (347)
+
T Consensus 315 ~ 315 (456)
T PRK10590 315 P 315 (456)
T ss_pred C
Confidence 4
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-51 Score=318.67 Aligned_cols=323 Identities=34% Similarity=0.550 Sum_probs=286.6
Q ss_pred ceeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCC
Q 019041 14 EITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQP 93 (347)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~ 93 (347)
..+.+-.+...+...|+.+|+.+++++++++.||+.|+..|++++..+++|++++.++..|+|||.+|.+..++.+.-..
T Consensus 14 ~~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~ 93 (400)
T KOG0328|consen 14 TVEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV 93 (400)
T ss_pred ceeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc
Confidence 44555677888999999999999999999999999999999999999999999999999999999999888877665543
Q ss_pred CccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCC
Q 019041 94 RLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLR 173 (347)
Q Consensus 94 ~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 173 (347)
+ ..++|+++|+++|+.|..+.+..++...++.++.+.||.+..+.++.+..+.+++.+||+++++.++...+.-.
T Consensus 94 r-----~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr 168 (400)
T KOG0328|consen 94 R-----ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTR 168 (400)
T ss_pred c-----eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccc
Confidence 2 45799999999999999999999999999999999999999999998888999999999999999999999889
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEe
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV 253 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (347)
.+.++|+||++.+++.+|..++..+++++++.+|++++|||++..+....+.++.+|..+.+...+.........++...
T Consensus 169 ~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve 248 (400)
T KOG0328|consen 169 AVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE 248 (400)
T ss_pred ceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec
Confidence 99999999999999999999999999999999999999999999999999999999999998877765544444444444
Q ss_pred cchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEE
Q 019041 254 TEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA 333 (347)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 333 (347)
.+..+.+ .|..+.... .-..++|||+++....++.+.+++..+.+..+||+|++++|+.+++.|++|+.+||++
T Consensus 249 ~EewKfd-----tLcdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 249 KEEWKFD-----TLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred hhhhhHh-----HHHHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 4443443 333333322 3358999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCCcCC
Q 019041 334 TDVAARGLGRITVC 347 (347)
Q Consensus 334 T~~~~~Gidip~v~ 347 (347)
|++-++|+|+|.|+
T Consensus 323 TDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 323 TDVWARGIDVQQVS 336 (400)
T ss_pred echhhccCCcceeE
Confidence 99999999999873
No 11
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.1e-49 Score=354.04 Aligned_cols=313 Identities=35% Similarity=0.533 Sum_probs=264.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc
Q 019041 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (347)
Q Consensus 28 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 107 (347)
.|+++++++.+.+.+...||..|+++|.++++.+++|+++++++|||+|||++|++++++.+...+... .+..++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~-~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRK-SGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccC-CCCceEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999999886543221 2256899999
Q ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 108 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
|+++|+.|+.+.+..+....++.+..++|+.........+..+++|+|+||+++.+.+....+.+.++++||+||||++.
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999998888999999999988777766677788999999999999998888888999999999999999
Q ss_pred ccCChHHHHHHHhhcCCCccEEEEEeecch-hHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHH
Q 019041 188 DMGFEPQIRKIVTQIRPDRQTLYWSATWPR-EVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICR 266 (347)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (347)
+.+|...+..+....+...|++++|||+.. .+..+...++..+..+...... .........+....... .....
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~----~k~~~ 235 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLE----HKTAL 235 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHH----HHHHH
Confidence 999999999999888888999999999975 4677777787777766554332 22223333333332211 11223
Q ss_pred HHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 267 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 267 l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
+..++. ....+++||||+++++++.+++.|++.|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+|
T Consensus 236 l~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v 314 (434)
T PRK11192 236 LCHLLK-QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDV 314 (434)
T ss_pred HHHHHh-cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCC
Confidence 334443 2345799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 019041 347 C 347 (347)
Q Consensus 347 ~ 347 (347)
+
T Consensus 315 ~ 315 (434)
T PRK11192 315 S 315 (434)
T ss_pred C
Confidence 4
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-49 Score=362.08 Aligned_cols=315 Identities=38% Similarity=0.587 Sum_probs=264.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccC--CCCCEE
Q 019041 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQ--GEGPIV 103 (347)
Q Consensus 26 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~--~~~~~~ 103 (347)
...|+.+++++.+.++|...||..|+++|.++|+.+++|+++++++|||||||++|++++++++...+.... ...+++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 346999999999999999999999999999999999999999999999999999999999998865432111 125789
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC-CCCCCcccEEEEec
Q 019041 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDE 182 (347)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE 182 (347)
|||+|+++|+.|+.+.+.+++...++.+..++|+.........+..+++|+|+||++|++.+... ...+..+++||+||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999988899999999998877766667777899999999999988765 45678899999999
Q ss_pred chhhhccCChHHHHHHHhhcCC--CccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccc
Q 019041 183 ADRMLDMGFEPQIRKIVTQIRP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (347)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~--~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (347)
||++.+.+|...+..++..++. ..|++++|||++..+..+...++..+..+....... ........+.......+.
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~-~~~~i~q~~~~~~~~~k~- 245 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPADEEKQ- 245 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccc-cccceeEEEEecCHHHHH-
Confidence 9999999999999999988865 679999999999988888888888877665543322 222233333333322222
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccC
Q 019041 261 SMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARG 340 (347)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 340 (347)
..+..++.. ..++++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 246 ----~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arG 320 (572)
T PRK04537 246 ----TLLLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARG 320 (572)
T ss_pred ----HHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcC
Confidence 234444443 356799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCC
Q 019041 341 LGRITVC 347 (347)
Q Consensus 341 idip~v~ 347 (347)
||+|+|+
T Consensus 321 IDip~V~ 327 (572)
T PRK04537 321 LHIDGVK 327 (572)
T ss_pred CCccCCC
Confidence 9999874
No 13
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-49 Score=333.24 Aligned_cols=342 Identities=47% Similarity=0.778 Sum_probs=315.1
Q ss_pred CChHHHHHhhhccceeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
|++.++..++...++.+.+.++|+|...|+.++++..+....+...|.+|++.|.++++..+.|++++-.|-||||||.+
T Consensus 197 l~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaA 276 (731)
T KOG0339|consen 197 LTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAA 276 (731)
T ss_pred cccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHH
Q 019041 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~ 160 (347)
|+++++-++...+....++++..+|+||+++|+.|+..++++|++..+++++.++||.+.+++...+..++.|||+||++
T Consensus 277 fi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgR 356 (731)
T KOG0339|consen 277 FIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGR 356 (731)
T ss_pred HHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHH
Confidence 99999999998888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEeccccc
Q 019041 161 LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLEL 240 (347)
Q Consensus 161 l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (347)
|.+.+.-+..++.+.+++|+||++++.+.+|...++.+..++++++|.+++|||+...++.+++.++.+|..+......
T Consensus 357 lid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg- 435 (731)
T KOG0339|consen 357 LIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG- 435 (731)
T ss_pred HHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh-
Confidence 9999999899999999999999999999999999999999999999999999999999999999999999887776443
Q ss_pred ccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHH
Q 019041 241 KANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVL 320 (347)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~ 320 (347)
.....+...+..+....+.-. .++.-+.+....+++|+|+.-+..++.++..|+-.|+.+..+||++.+.+|.+++
T Consensus 436 ean~dITQ~V~V~~s~~~Kl~----wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 436 EANEDITQTVSVCPSEEKKLN----WLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred ccccchhheeeeccCcHHHHH----HHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHH
Confidence 344556666666666555444 4444455555678999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 321 AEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 321 ~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+|+.+..+|+|+|++..+|+|||+++
T Consensus 512 s~fKkk~~~VlvatDvaargldI~~ik 538 (731)
T KOG0339|consen 512 SKFKKKRKPVLVATDVAARGLDIPSIK 538 (731)
T ss_pred HHHhhcCCceEEEeeHhhcCCCccccc
Confidence 999999999999999999999999874
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.1e-48 Score=358.78 Aligned_cols=310 Identities=38% Similarity=0.610 Sum_probs=266.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE
Q 019041 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (347)
Q Consensus 26 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li 105 (347)
...|+++++++.++++|.++||..|+++|.++++.++++++++++||||+|||++|+++++..+.... .++++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~-----~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL-----KAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc-----CCCeEEE
Confidence 34599999999999999999999999999999999999999999999999999999999998875432 2578999
Q ss_pred EcCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecch
Q 019041 106 LAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (347)
++|+++|+.|+.+.+..+.... ++.+..++++.........+..+++|+|+||+++.+.+......++++++||+||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999998876554 788999999987777777777889999999999999998888889999999999999
Q ss_pred hhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHH
Q 019041 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFI 264 (347)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (347)
.++..+|...+..++..++...|.+++|||++.....+...++.+|..+.+...... .......+.......+..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~-~~~i~q~~~~v~~~~k~~---- 234 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTT-RPDISQSYWTVWGMRKNE---- 234 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcccc-CCceEEEEEEechhhHHH----
Confidence 999999999999999999989999999999999999999999988887766544322 222223332332222222
Q ss_pred HHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 265 CRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 265 ~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
.+..++.. ....++||||+++.++..+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 235 -~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip 312 (629)
T PRK11634 235 -ALVRFLEA-EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 312 (629)
T ss_pred -HHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcc
Confidence 45555543 2456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 019041 345 TVC 347 (347)
Q Consensus 345 ~v~ 347 (347)
+|.
T Consensus 313 ~V~ 315 (629)
T PRK11634 313 RIS 315 (629)
T ss_pred cCC
Confidence 874
No 15
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.1e-47 Score=338.21 Aligned_cols=312 Identities=32% Similarity=0.549 Sum_probs=260.7
Q ss_pred CccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEE
Q 019041 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (347)
....|+++++++.+.+++..+||..|+++|.++++.+++++++++++|||+|||++|+++++..+.... .+.++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~-----~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL-----NACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC-----CCceEE
Confidence 346699999999999999999999999999999999999999999999999999999999988775432 266899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecch
Q 019041 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (347)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (347)
|++|+++|+.|+.+.+..++...++.+..+.|+.........+..+++|+|+||+++...+......+++++++|+||+|
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 99999999999999999988877888888888877666666677778999999999999888777788999999999999
Q ss_pred hhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHH
Q 019041 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFI 264 (347)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (347)
++.+.++...+..++..+.+..|++++|||++.........++..+..+.+...... .......+...... ....
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~ 255 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELT-LEGIRQFYVAVEKE----EWKF 255 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcc-cCCceEEEEecChH----HHHH
Confidence 999988888888999988889999999999998888888888887776655433221 11222222222111 1122
Q ss_pred HHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 265 CRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 265 ~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
..+..++.. ....++||||+++++++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 256 ~~l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip 334 (401)
T PTZ00424 256 DTLCDLYET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQ 334 (401)
T ss_pred HHHHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcc
Confidence 233344333 2456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 019041 345 TVC 347 (347)
Q Consensus 345 ~v~ 347 (347)
+++
T Consensus 335 ~v~ 337 (401)
T PTZ00424 335 QVS 337 (401)
T ss_pred cCC
Confidence 874
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.4e-47 Score=340.73 Aligned_cols=315 Identities=36% Similarity=0.540 Sum_probs=262.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCcc--CCCCCEE
Q 019041 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV--QGEGPIV 103 (347)
Q Consensus 26 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~--~~~~~~~ 103 (347)
...|..+++++.+.++|.++||..|+++|.++++.+++|+++++.+|||||||++|+++++..+.+.+... ..+..++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 34588899999999999999999999999999999999999999999999999999999999887653211 1125689
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEEEEec
Q 019041 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (347)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (347)
|||+|+++|+.|+.+.+..+....++++..+.|+.........+. ..++|+|+||++++.....+...++++++||+||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 999999999999999999998888999999999877665555543 4689999999999998888888889999999999
Q ss_pred chhhhccCChHHHHHHHhhcCC--CccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccc
Q 019041 183 ADRMLDMGFEPQIRKIVTQIRP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (347)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~--~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (347)
+|++.+.++...+..++..... ..|++++|||+......+...++..+..+.+...... .......+.......+..
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVA-SDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCC-CCcccEEEEEecchhHHH
Confidence 9999998898889988887753 5689999999999888888888888877655443322 122223333333322221
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccC
Q 019041 261 SMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARG 340 (347)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 340 (347)
.+..++.. ...+++||||+++++++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||+++++|
T Consensus 325 -----~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~G 398 (475)
T PRK01297 325 -----LLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRG 398 (475)
T ss_pred -----HHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Confidence 34444443 345699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCC
Q 019041 341 LGRITVC 347 (347)
Q Consensus 341 idip~v~ 347 (347)
||+|+|+
T Consensus 399 IDi~~v~ 405 (475)
T PRK01297 399 IHIDGIS 405 (475)
T ss_pred CcccCCC
Confidence 9999985
No 17
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-48 Score=318.31 Aligned_cols=340 Identities=47% Similarity=0.800 Sum_probs=301.8
Q ss_pred CChHHHHHhhhccc-eee------ccCCCCCCcccccc-CCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcC
Q 019041 1 MTETEVKMYRARRE-ITV------EGHDVPRPIRIFQE-ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAE 72 (347)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~ 72 (347)
||+.|+..+++.+. +.. +....|+|...|+. +...+++.++++..||..|+|+|.++|+.+++|.+.+..|.
T Consensus 186 ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQ 265 (629)
T KOG0336|consen 186 LSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQ 265 (629)
T ss_pred CCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEe
Confidence 78888888876663 222 22336688888988 78899999999999999999999999999999999999999
Q ss_pred CCCchhHHhHHHHHHhhhcCCCcc-CCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCC
Q 019041 73 TGSGKTLSYLLPAFVHVSAQPRLV-QGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGV 151 (347)
Q Consensus 73 tGsGKT~~~~~~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (347)
||+|||++|+++.+.++...+... +..++.+|+++|+++|+.|+.-+..++ ...+....+++|+.+..+.+..+..+.
T Consensus 266 TgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgv 344 (629)
T KOG0336|consen 266 TGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGV 344 (629)
T ss_pred cCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCc
Confidence 999999999999887776554332 445889999999999999988888776 345888999999999999999999999
Q ss_pred cEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCe
Q 019041 152 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPY 231 (347)
Q Consensus 152 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~ 231 (347)
+|+++||.+|.++...+..++..+.++|+|||+++++.+|...++.++-.+++++|.++.||||++.+..+...|+.+|.
T Consensus 345 eiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~ 424 (629)
T KOG0336|consen 345 EIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPM 424 (629)
T ss_pred eEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCC
Q 019041 232 KVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDK 311 (347)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 311 (347)
.+.+...+......+...+....+.++.. .+-.++....+..|+||||.++-.|..+...|.-.|+....+||.-
T Consensus 425 ~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~-----~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r 499 (629)
T KOG0336|consen 425 IVYVGSLDLVAVKSVKQNIIVTTDSEKLE-----IVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNR 499 (629)
T ss_pred EEEecccceeeeeeeeeeEEecccHHHHH-----HHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCCh
Confidence 99999888877777777775555555443 5556667777788999999999999999999988999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 312 NQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 312 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
.+.+|..+++.|++|+.+|||+|+.+++|+|+|||
T Consensus 500 ~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~Di 534 (629)
T KOG0336|consen 500 EQSDREMALEDFKSGEVRILVATDLASRGLDVPDI 534 (629)
T ss_pred hhhhHHHHHHhhhcCceEEEEEechhhcCCCchhc
Confidence 99999999999999999999999999999999997
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-47 Score=309.17 Aligned_cols=314 Identities=34% Similarity=0.475 Sum_probs=264.1
Q ss_pred CCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCE
Q 019041 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (347)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (347)
...+.+|+.+|+++|+.+.++++|+..|+|.|..+++.+++|++++-+|-||||||.+|.+|+++++...+. +..
T Consensus 3 ~~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~-----giF 77 (442)
T KOG0340|consen 3 RKTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY-----GIF 77 (442)
T ss_pred ccccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC-----cce
Confidence 345678999999999999999999999999999999999999999999999999999999999999999874 778
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC----CCCcccEE
Q 019041 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT----NLRRVTYL 178 (347)
Q Consensus 103 ~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~----~~~~~~~i 178 (347)
++|++|+++|+-|..+.|...++..++++..+.||...-.+...+...++++|+||+++...+..... .+.++.++
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeE
Confidence 99999999999999999999999999999999999988888888889999999999999998876632 36678999
Q ss_pred EEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecc-cccccccccceeEEEecchh
Q 019041 179 VLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGS-LELKANQSINQVVEVVTEAE 257 (347)
Q Consensus 179 IvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 257 (347)
|+|||+.+++..|.+.+..+.+.++..+|.+++|||+......+..--...+..+.+.. .+..........+..++...
T Consensus 158 VlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v 237 (442)
T KOG0340|consen 158 VLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV 237 (442)
T ss_pred EecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh
Confidence 99999999999999999999999998999999999998765554433333222222222 22222333333333333333
Q ss_pred ccccHHHHHHHHHHHhhc--CCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 258 KYNSMFICRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~--~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
+.- -+...+.... ..+.++||+++..+|+.++..|+..++++..+|+.|++.+|-..+.+|+++..+|||||+
T Consensus 238 kda-----YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD 312 (442)
T KOG0340|consen 238 KDA-----YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATD 312 (442)
T ss_pred hHH-----HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec
Confidence 322 2334444333 467899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcC
Q 019041 336 VAARGLGRITV 346 (347)
Q Consensus 336 ~~~~Gidip~v 346 (347)
++++|+|+|.|
T Consensus 313 VAsRGLDIP~V 323 (442)
T KOG0340|consen 313 VASRGLDIPTV 323 (442)
T ss_pred hhhcCCCCCce
Confidence 99999999987
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-48 Score=323.96 Aligned_cols=314 Identities=35% Similarity=0.499 Sum_probs=278.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEE
Q 019041 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil 106 (347)
.+|+.++|+-.+.+++..+||..|+|+|...|+..+-|++++.+|.||||||.+|++|++.++.-.|... ..-++|||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~--~~TRVLVL 258 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV--AATRVLVL 258 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC--cceeEEEE
Confidence 3699999999999999999999999999999999999999999999999999999999999998876532 24589999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC-CCCCCcccEEEEecchh
Q 019041 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDEADR 185 (347)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE~h~ 185 (347)
|||++|+.|.+...+++.++.++.++.+.||-....+...+...++|+|+||++|.+++.+. .++++++.++|+|||++
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999999999999999999999999999988888888899999999999999988655 57889999999999999
Q ss_pred hhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHH
Q 019041 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFIC 265 (347)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (347)
+++.+|...+..++...+..+|.+++|||+...+..++..-+..|..+.++........-..+++......+.....
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea--- 415 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREA--- 415 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHH---
Confidence 99999999999999999999999999999999999999999999999999877655555555555444343333322
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.+..++.... ..+++||+.+++.|..+.-.|--.|..+.-+||.+++.+|-+.++.|+.++++|||||+++++|+||++
T Consensus 416 ~l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 416 MLASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 2333333332 469999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 019041 346 V 346 (347)
Q Consensus 346 v 346 (347)
|
T Consensus 495 V 495 (691)
T KOG0338|consen 495 V 495 (691)
T ss_pred e
Confidence 7
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-45 Score=305.46 Aligned_cols=315 Identities=34% Similarity=0.497 Sum_probs=268.3
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEE
Q 019041 27 RIFQEAN--FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (347)
Q Consensus 27 ~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (347)
..|+.++ |+|++.+++..+||...+|.|..+++.++.++++++.++||||||++|++|++..+............-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3466664 55999999999999999999999999999999999999999999999999999998443322211134689
Q ss_pred EEcCcHHHHHHHHHHHHHhccC-CCceEEEEECCCCCchhhHhhc-CCCcEEEeChHHHHHHHhcCCC--CCCcccEEEE
Q 019041 105 VLAPTRELAVQIQEEALKFGSR-AGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHT--NLRRVTYLVL 180 (347)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~iIv 180 (347)
||+||++|+.|+.+....|... .++++.++.||.+..+++..+. .++.|+|+||++|.+++.+... ++.+++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999888776 6888999999988877776654 4678999999999999987544 4559999999
Q ss_pred ecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccc-cccccceeEEEecchhcc
Q 019041 181 DEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELK-ANQSINQVVEVVTEAEKY 259 (347)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 259 (347)
|||+++++.+|...+..++..++.+++.=++|||....+.++.+..+.+|..+.+...... .+......+..+....+.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888766543 233345555566666666
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC--CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019041 260 NSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 337 (347)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 337 (347)
. .+++++... ..+|+|||+++=...+.++..|... ...+..+||++.+..|..+++.|....-.+|+||+++
T Consensus 244 ~-----~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVa 317 (567)
T KOG0345|consen 244 S-----QLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVA 317 (567)
T ss_pred H-----HHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhh
Confidence 6 777777764 5579999999999999988888654 5688999999999999999999999778899999999
Q ss_pred ccCCCCCcCC
Q 019041 338 ARGLGRITVC 347 (347)
Q Consensus 338 ~~Gidip~v~ 347 (347)
++|+|+|+|.
T Consensus 318 ARGlDip~iD 327 (567)
T KOG0345|consen 318 ARGLDIPGID 327 (567)
T ss_pred hccCCCCCce
Confidence 9999999973
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-45 Score=314.69 Aligned_cols=329 Identities=44% Similarity=0.702 Sum_probs=288.2
Q ss_pred ceeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCC
Q 019041 14 EITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQP 93 (347)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~ 93 (347)
..++.+.+.|.++..|..-.+++.+..+++..++..|+|+|+.+++.+..|++.+++|+||+|||.+|++|++..+....
T Consensus 61 ~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred eeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 34567888888888999989999999999999999999999999999999999999999999999999999999987753
Q ss_pred Ccc---CCC--CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC
Q 019041 94 RLV---QGE--GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ 168 (347)
Q Consensus 94 ~~~---~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 168 (347)
... .+. .++++|++||++|+.|.+++.+++.-..+++....+|+.+.....+...++++|+|+||++|.++++.+
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g 220 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG 220 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc
Confidence 211 111 489999999999999999999999888899999999998888888889999999999999999999999
Q ss_pred CCCCCcccEEEEecchhhhc-cCChHHHHHHHhhcCC----CccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccc
Q 019041 169 HTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRP----DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKAN 243 (347)
Q Consensus 169 ~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~----~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (347)
.+.+.++.++|+|||+.+++ .+|.+.++.+...... .+|.+++|||++..+..+...++.+.+........-...
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~ 300 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTS 300 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccc
Confidence 99999999999999999998 8899999999877743 679999999999999998887777644333333333556
Q ss_pred cccceeEEEecchhccccHHHHHHHHHHHhhc---CCC-----eEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHH
Q 019041 244 QSINQVVEVVTEAEKYNSMFICRLIKLLKEVM---DGS-----RILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSE 315 (347)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~-----~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 315 (347)
.+....+..+....+.. .+++++.... ..+ +++|||.+++.+..++..|...++++..+||+-++.+
T Consensus 301 ~ni~q~i~~V~~~~kr~-----~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~e 375 (482)
T KOG0335|consen 301 ENITQKILFVNEMEKRS-----KLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIE 375 (482)
T ss_pred ccceeEeeeecchhhHH-----HHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhH
Confidence 66777777777777766 6777776443 233 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 316 RDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 316 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
|.+.++.|+.|..++||||+++++|+|+|+|+
T Consensus 376 r~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~ 407 (482)
T KOG0335|consen 376 REQALNDFRNGKAPVLVATNVAARGLDIPNVK 407 (482)
T ss_pred HHHHHHHhhcCCcceEEEehhhhcCCCCCCCc
Confidence 99999999999999999999999999999884
No 22
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.1e-47 Score=308.51 Aligned_cols=338 Identities=41% Similarity=0.685 Sum_probs=295.1
Q ss_pred CChHHHHHhhhccceeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
||+++-+-.+++..+.+++.+.|.|+.+|.++-++..+++.|++.|+.+|+|+|.+.++.++.|++.+-.|-||||||++
T Consensus 144 mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlv 223 (610)
T KOG0341|consen 144 MSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 223 (610)
T ss_pred hhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEE
Confidence 78888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCC---CccCCCCCEEEEEcCcHHHHHHHHHHHHHhccC------CCceEEEEECCCCCchhhHhhcCCC
Q 019041 81 YLLPAFVHVSAQP---RLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR------AGIRSTCIYGGAPKGPQIRDLRRGV 151 (347)
Q Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (347)
|.+|++-...+.+ .+..+.++..||+||+++|+.|.++.+..+... ..++...+.||....+.......+.
T Consensus 224 FvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~Gv 303 (610)
T KOG0341|consen 224 FVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGV 303 (610)
T ss_pred EeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCe
Confidence 9988765554331 222334899999999999999999988776443 3468889999999998888888999
Q ss_pred cEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCe
Q 019041 152 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPY 231 (347)
Q Consensus 152 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~ 231 (347)
+|+|+||++|.+.+..+..++.-+.++.+||++++.+.+|...++.++..+...+|.+++|||++..+..+++.-+-.|.
T Consensus 304 HivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPv 383 (610)
T KOG0341|consen 304 HIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPV 383 (610)
T ss_pred eEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccce
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCC
Q 019041 232 KVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDK 311 (347)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 311 (347)
.+.+......... +...+..+....+.. .+++.+++ ...++||||..+.+...++++|--.|..+..+||+-
T Consensus 384 tvNVGRAGAAsld-ViQevEyVkqEaKiV-----ylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGK 455 (610)
T KOG0341|consen 384 TVNVGRAGAASLD-VIQEVEYVKQEAKIV-----YLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGK 455 (610)
T ss_pred EEecccccccchh-HHHHHHHHHhhhhhh-----hHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCc
Confidence 8888765432222 222222233333322 56677766 355999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 312 NQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 312 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
++++|...++.|+.|+.+|||||++++.|+|+|++
T Consensus 456 DQedR~~ai~afr~gkKDVLVATDVASKGLDFp~i 490 (610)
T KOG0341|consen 456 DQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDI 490 (610)
T ss_pred chhHHHHHHHHHhcCCCceEEEecchhccCCCccc
Confidence 99999999999999999999999999999999997
No 23
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-45 Score=311.72 Aligned_cols=332 Identities=31% Similarity=0.450 Sum_probs=289.1
Q ss_pred hHHHHHhhhccceeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 3 ETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
++.+.++.+++.- - ..+....|+.++++....++|++.+|..++.+|++.|+..+.|++++-.|-||||||++|+
T Consensus 50 ee~i~~l~~ky~e----i-~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFl 124 (758)
T KOG0343|consen 50 EEEIEELKQKYAE----I-DSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFL 124 (758)
T ss_pred HHHHHHHHHHHHH----h-hhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeeh
Confidence 3455566665541 1 1567778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHH
Q 019041 83 LPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 162 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~ 162 (347)
+|.++++....= ....|.=+|||+||++||.|..+.+.+.+...++....+.||.....+. .-.+..+|+||||++|+
T Consensus 125 vPvlE~L~r~kW-s~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~-eRi~~mNILVCTPGRLL 202 (758)
T KOG0343|consen 125 VPVLEALYRLKW-SPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFEL-ERISQMNILVCTPGRLL 202 (758)
T ss_pred HHHHHHHHHcCC-CCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHH-HhhhcCCeEEechHHHH
Confidence 999998866421 1123667999999999999999999999999999999999998754443 33346899999999999
Q ss_pred HHHhcC-CCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccc-c
Q 019041 163 DMLEAQ-HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLE-L 240 (347)
Q Consensus 163 ~~~~~~-~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~-~ 240 (347)
..+... .+..+++.++|+|||+++++.+|...+..++..+++.+|.+++|||....+.++++.-+.+|..+.+.... .
T Consensus 203 QHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~ 282 (758)
T KOG0343|consen 203 QHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVA 282 (758)
T ss_pred HHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccc
Confidence 988655 46778899999999999999999999999999999999999999999999999999999999998887544 5
Q ss_pred ccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh--CCCCceeecCCCCHHHHHH
Q 019041 241 KANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM--DGWPALSIHGDKNQSERDW 318 (347)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~--~~~~~~~~~~~~~~~~r~~ 318 (347)
..+......+..+...++.+ .|...+..+ ...++|||++|-+++..+++.+.+ .|+++..+||.|++..|..
T Consensus 283 atP~~L~Q~y~~v~l~~Ki~-----~L~sFI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 283 ATPSNLQQSYVIVPLEDKID-----MLWSFIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred cChhhhhheEEEEehhhHHH-----HHHHHHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHH
Confidence 56667788888888888877 777777775 457999999999999999999975 5889999999999999999
Q ss_pred HHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 319 VLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 319 ~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
++++|.....-||+||+++++|+|+|.|+
T Consensus 357 v~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 357 VYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 99999999999999999999999999875
No 24
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.4e-45 Score=305.47 Aligned_cols=319 Identities=35% Similarity=0.504 Sum_probs=274.6
Q ss_pred CCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCE
Q 019041 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (347)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (347)
..+...|+...|++...+++..+||..+++.|+..++.++.|+++++.|-||+|||++|++|+++.+.+..... ..+-.
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-r~~~~ 156 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-RNGTG 156 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-CCCee
Confidence 34455688999999999999999999999999999999999999999999999999999999999988764322 24668
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC-CCCcccEEEE
Q 019041 103 VLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVL 180 (347)
Q Consensus 103 ~lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIv 180 (347)
++|+|||++|+.|...+++++.... ++.+..+.||.+...+...+..+++|+|+||++|.+++++... ...+.+++|+
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvl 236 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVL 236 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEe
Confidence 9999999999999999999988887 8899999999998888888888999999999999999987654 3456689999
Q ss_pred ecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCC-CeEEEecccccccc-cccceeEEEecchhc
Q 019041 181 DEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRN-PYKVIIGSLELKAN-QSINQVVEVVTEAEK 258 (347)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 258 (347)
|||+++++.+|...+..++..++..+|.+++|||.+..++++.+..+.. +..+...+...... .....-+........
T Consensus 237 DEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~ 316 (543)
T KOG0342|consen 237 DEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR 316 (543)
T ss_pred ecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch
Confidence 9999999999999999999999999999999999999999998877665 55555544433222 223333333333333
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019041 259 YNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 338 (347)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 338 (347)
.. .+..++++.....|++|||++-.....+++.|+..+.+|..+||+.++..|..+..+|...+.-|||||++++
T Consensus 317 f~-----ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaA 391 (543)
T KOG0342|consen 317 FS-----LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAA 391 (543)
T ss_pred HH-----HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhh
Confidence 22 6778888877779999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCC
Q 019041 339 RGLGRITVC 347 (347)
Q Consensus 339 ~Gidip~v~ 347 (347)
+|+|+|+|.
T Consensus 392 RGlD~P~V~ 400 (543)
T KOG0342|consen 392 RGLDIPDVD 400 (543)
T ss_pred ccCCCCCce
Confidence 999999983
No 25
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-46 Score=296.26 Aligned_cols=311 Identities=28% Similarity=0.499 Sum_probs=281.7
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEE
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (347)
+....||++.|..++...+.+.||+.|+|.|.++++..+.|++++..|-.|+|||-+|.+|.++.+..... .-++
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~-----~IQ~ 156 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKN-----VIQA 156 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcccc-----ceeE
Confidence 55667999999999999999999999999999999999999999999999999999999999999877543 4579
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecc
Q 019041 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEA 183 (347)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~ 183 (347)
++++|+++||-|....+.++.+..++.+....||.+...++..+..+-+++|+||++++++...+...++++.++|+|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 99999999999999999999999999999999999999888888889999999999999999999889999999999999
Q ss_pred hhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHH
Q 019041 184 DRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMF 263 (347)
Q Consensus 184 h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (347)
+.+++..|...+..++..+++.+|++++|||++-.+..++.+++..|+.+..-+. -....+..++.++.+..+..
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvh--- 311 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVH--- 311 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhh---
Confidence 9999999999999999999999999999999999999999999999998876543 23455566777777666654
Q ss_pred HHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCC
Q 019041 264 ICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGR 343 (347)
Q Consensus 264 ~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 343 (347)
-+-.++.+. .-...+|||||...++.++..+.+.|+.++.+|++|-++.|.++++.|++|..+.||||+.+.+|||+
T Consensus 312 --CLntLfskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDi 388 (459)
T KOG0326|consen 312 --CLNTLFSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDI 388 (459)
T ss_pred --hHHHHHHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccccc
Confidence 343444443 33488999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCC
Q 019041 344 ITVC 347 (347)
Q Consensus 344 p~v~ 347 (347)
+.||
T Consensus 389 qavN 392 (459)
T KOG0326|consen 389 QAVN 392 (459)
T ss_pred ceee
Confidence 9986
No 26
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-45 Score=331.47 Aligned_cols=340 Identities=46% Similarity=0.807 Sum_probs=309.0
Q ss_pred CChHHHHHhhhccc-eeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhH
Q 019041 1 MTETEVKMYRARRE-ITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~ 79 (347)
||..++..|+...- +.+++.+-|.|...|..-|++..++.-++.+|+..|+++|.+||++++.|+++|.+|-||||||+
T Consensus 338 ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~ 417 (997)
T KOG0334|consen 338 MSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTL 417 (997)
T ss_pred HHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccch
Confidence 57788889977775 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChH
Q 019041 80 SYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~ 159 (347)
+|++|++.++...+....+.++.++|++|+++|+.|+.+++.+|...+++++++.+|+......+..+.+++.|+|+||+
T Consensus 418 af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpG 497 (997)
T KOG0334|consen 418 AFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPG 497 (997)
T ss_pred hhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccc
Confidence 99999998888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCC---CCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEec
Q 019041 160 RLIDMLEAQHTN---LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (347)
Q Consensus 160 ~l~~~~~~~~~~---~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~ 236 (347)
+..+.+-..... +....++|+||++++.+.+|.+.+..+++.+++.+|.+++|||+++.++.+.+..+..|..+.+.
T Consensus 498 RmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~ 577 (997)
T KOG0334|consen 498 RMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG 577 (997)
T ss_pred hhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc
Confidence 999987655544 44556999999999999999999999999999999999999999999999999999988887766
Q ss_pred ccccccccccceeEEEec-chhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHH
Q 019041 237 SLELKANQSINQVVEVVT-EAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSE 315 (347)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 315 (347)
.. ......+...+..+. ...+.. .|++++.......+++|||.+.+.|..+.+.|.+.|+.+..+||+.++.+
T Consensus 578 ~~-svV~k~V~q~v~V~~~e~eKf~-----kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~d 651 (997)
T KOG0334|consen 578 GR-SVVCKEVTQVVRVCAIENEKFL-----KLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHD 651 (997)
T ss_pred cc-eeEeccceEEEEEecCchHHHH-----HHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHH
Confidence 33 334444555555555 555544 78888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 316 RDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 316 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
|...++.|++|...+||+|+.+++|+|++++
T Consensus 652 R~sti~dfK~~~~~LLvaTsvvarGLdv~~l 682 (997)
T KOG0334|consen 652 RSSTIEDFKNGVVNLLVATSVVARGLDVKEL 682 (997)
T ss_pred HHhHHHHHhccCceEEEehhhhhcccccccc
Confidence 9999999999999999999999999999875
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-44 Score=296.98 Aligned_cols=304 Identities=30% Similarity=0.449 Sum_probs=268.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCc-cCCCCCEEEE
Q 019041 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL-VQGEGPIVLV 105 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~-~~~~~~~~li 105 (347)
..|+.+||++.+++++.+.|+..|+-+|..+|+.+++|++++..|.||||||.+|++|+++.+...... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 579999999999999999999999999999999999999999999999999999999999998776544 3344789999
Q ss_pred EcCcHHHHHHHHHHHHHhccCC--CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCC-CCCCcccEEEEec
Q 019041 106 LAPTRELAVQIQEEALKFGSRA--GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-TNLRRVTYLVLDE 182 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIvDE 182 (347)
++||++|+.|.+..+.++.... .+++.-+..+.+.......+...++|+|+||..++..+..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999988875544 355555555555555555667789999999999999998776 5677899999999
Q ss_pred chhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccH
Q 019041 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSM 262 (347)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (347)
|+.++..+|...+..+.+++++..|.++||||++.++..+.+.++.+|..+...+.+.........+...+++.++..
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl-- 256 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL-- 256 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH--
Confidence 999999999999999999999999999999999999999999999999999999888887777888877777666654
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 263 FICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+..+++-..-.+|+|||+|+++.+..+.-.|...|++..+++|++|...|.-++++|+.|-++++|||+
T Consensus 257 ---llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD 326 (569)
T KOG0346|consen 257 ---LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATD 326 (569)
T ss_pred ---HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEcc
Confidence 4555555444568999999999999999999999999999999999999999999999999999999998
No 28
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-43 Score=287.34 Aligned_cols=312 Identities=27% Similarity=0.437 Sum_probs=268.7
Q ss_pred CCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCC
Q 019041 22 VPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE 99 (347)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~ 99 (347)
+-.....|++++|.|++.++++.++|..|+.+|..+++.++.. +|.+.++..|+|||.+|.+.++.++.....
T Consensus 85 PlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~----- 159 (477)
T KOG0332|consen 85 PLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVV----- 159 (477)
T ss_pred CccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcccc-----
Confidence 3355566999999999999999999999999999999999875 799999999999999999999999877543
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhc-CCCCCCcccEE
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYL 178 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~i 178 (347)
.+.++.|+|+++|+.|..+.+.+++++.++...+...+...... -.-..+|+++||+.+.++... .-+.+..+.++
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 67899999999999999999999999988887777766622111 111368999999999999876 56678899999
Q ss_pred EEecchhhhcc-CChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchh
Q 019041 179 VLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (347)
Q Consensus 179 IvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (347)
|+|||+.+.+. +|.+.-..+...+++..|++++|||+...+..++....+++..+.+...+.........+..+....+
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~ 316 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD 316 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh
Confidence 99999988764 58888888999898899999999999999999999999999999998887766666666666666666
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019041 258 KYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 337 (347)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 337 (347)
++. .+.+ +.....-+..+|||.+++.|.+++..+...|+.+.++||++..++|..++++|+.|..+|||+|+++
T Consensus 317 K~~-----~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ 390 (477)
T KOG0332|consen 317 KYQ-----ALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC 390 (477)
T ss_pred HHH-----HHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh
Confidence 665 4444 3333344689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCC
Q 019041 338 ARGLGRITVC 347 (347)
Q Consensus 338 ~~Gidip~v~ 347 (347)
++|||++.|+
T Consensus 391 ARGiDv~qVs 400 (477)
T KOG0332|consen 391 ARGIDVAQVS 400 (477)
T ss_pred hcccccceEE
Confidence 9999998764
No 29
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-43 Score=294.85 Aligned_cols=324 Identities=32% Similarity=0.480 Sum_probs=258.9
Q ss_pred CCCCccccccCCCCHHHHHHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCC-CccCCC
Q 019041 22 VPRPIRIFQEANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQP-RLVQGE 99 (347)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~ 99 (347)
.|-....|..+||++.+...|+. +++..|+.+|.++|+.+++|++++|.++||||||++|++|+++.+...+ +..-..
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 33445569999999999999997 8999999999999999999999999999999999999999999998764 333345
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCC-CCCCcccE
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-TNLRRVTY 177 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~ 177 (347)
|.-+||++||++|+.|.++.+.++.... .+.-+.+.||.....+...+..+.+|+|+||++|.+.+.+.. +.++.+.+
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 8899999999999999999999986654 556678889988888888888999999999999999987664 57788999
Q ss_pred EEEecchhhhccCChHHHHHHHhhcC-------------CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccc-
Q 019041 178 LVLDEADRMLDMGFEPQIRKIVTQIR-------------PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKAN- 243 (347)
Q Consensus 178 iIvDE~h~~~~~~~~~~~~~~~~~~~-------------~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (347)
+|+||++++++.+|...+..+++.+. +..|.+++|||+.+.+.++...-+.+|..+..+.......
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 99999999999999999999988772 1357799999999999999999999988776332211111
Q ss_pred -----------------------cccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh-
Q 019041 244 -----------------------QSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM- 299 (347)
Q Consensus 244 -----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~- 299 (347)
......+..+. .+........++.-..+.+...|+|||+++.+.++.=+..|..
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVP--pKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~ 448 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVP--PKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEA 448 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecC--CchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhh
Confidence 11111111111 1222112222222223334556999999999999988877753
Q ss_pred ---------------------CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 300 ---------------------DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 300 ---------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+.+++.+||.|.+++|+.+++.|...+..||+||+++++|+|+|+|.
T Consensus 449 l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~ 517 (708)
T KOG0348|consen 449 LLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVG 517 (708)
T ss_pred hhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcC
Confidence 134578899999999999999999999989999999999999999984
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.5e-41 Score=316.03 Aligned_cols=299 Identities=20% Similarity=0.246 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 33 NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 33 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
.+++.+.+.|++.|+..|+++|.++++.+++|+|+++.+|||||||++|++|+++.+.+.+ +.++|||+|+++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~------~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP------RATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC------CcEEEEEcChHHH
Confidence 4899999999999999999999999999999999999999999999999999999987642 5789999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCC----CCCCcccEEEEecchhhhc
Q 019041 113 AVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH----TNLRRVTYLVLDEADRMLD 188 (347)
Q Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~----~~~~~~~~iIvDE~h~~~~ 188 (347)
+.|+.+.++++. ..++++..++|+... .+...+..+++|+|+||+++...+.... ..+++++++|+||+|.+..
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999986 447788777777654 3334455668999999999875432211 1267899999999998755
Q ss_pred cCChHHHHHHHhh-------cCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecc------
Q 019041 189 MGFEPQIRKIVTQ-------IRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE------ 255 (347)
Q Consensus 189 ~~~~~~~~~~~~~-------~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 255 (347)
.|+..+..+++. .....|++++|||++...+ ..+.+++.+..+. ...... .... ........
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~~~-~~~~-~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDGSP-RGAR-TVALWEPPLTELTG 246 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCCCC-cCce-EEEEecCCcccccc
Confidence 355554444333 3456799999999987654 5667777765432 221111 1111 11111110
Q ss_pred h------hccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC--------CCCceeecCCCCHHHHHHHHH
Q 019041 256 A------EKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--------GWPALSIHGDKNQSERDWVLA 321 (347)
Q Consensus 256 ~------~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~ 321 (347)
. ..........+..++. .+.++||||++++.++.++..|++. +..+..+||++++++|..+++
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred ccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHH
Confidence 0 0000112222333333 3679999999999999999988653 567889999999999999999
Q ss_pred HHhcCCCCEEEEecccccCCCCCcCC
Q 019041 322 EFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 322 ~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.|++|+.++||||+++++|||+|+|+
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd 349 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLD 349 (742)
T ss_pred HHHcCCceEEEECchHhccCCccccc
Confidence 99999999999999999999999974
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-42 Score=294.22 Aligned_cols=319 Identities=32% Similarity=0.441 Sum_probs=247.7
Q ss_pred CCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCC-
Q 019041 21 DVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG- 98 (347)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~- 98 (347)
.....+..|..++++..++++|..+||..|+++|.-.++.+..| .+++-.|.||||||++|.+|+++.+.+....+..
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 34566777999999999999999999999999999999998888 7999999999999999999999966543322211
Q ss_pred -----CCCE--EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC-
Q 019041 99 -----EGPI--VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT- 170 (347)
Q Consensus 99 -----~~~~--~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~- 170 (347)
..++ .||++||++|+.|+...+.......++++..+.||-....+-+.+...++|+|+||++|+..+.....
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 1344 99999999999999999999999999999999999998888888888999999999999999876654
Q ss_pred --CCCcccEEEEecchhhhccCChHHHHHHHhhcC-----CCccEEEEEeecchhH---------------------HHH
Q 019041 171 --NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR-----PDRQTLYWSATWPREV---------------------ETL 222 (347)
Q Consensus 171 --~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~lsaT~~~~~---------------------~~~ 222 (347)
+++++.++|+||++++++.++...+..+++.+. ..+|.+.+|||+.-.. +.+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 567789999999999999998888888888775 4679999999965431 112
Q ss_pred HHH--hcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC
Q 019041 223 ARQ--FLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD 300 (347)
Q Consensus 223 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~ 300 (347)
+.. +.+.|..+-......... ...+....+...++.. .+.= +... ..+++|||||+++.+..++-.|+..
T Consensus 415 mk~ig~~~kpkiiD~t~q~~ta~-~l~Es~I~C~~~eKD~-----ylyY-fl~r-yPGrTlVF~NsId~vKRLt~~L~~L 486 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQSATAS-TLTESLIECPPLEKDL-----YLYY-FLTR-YPGRTLVFCNSIDCVKRLTVLLNNL 486 (731)
T ss_pred HHHhCccCCCeeEecCcchhHHH-HHHHHhhcCCccccce-----eEEE-EEee-cCCceEEEechHHHHHHHHHHHhhc
Confidence 221 122232222222211100 0000000011111100 0000 0011 2469999999999999999999999
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 301 GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 301 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+++...+|+.|.+.+|-.-+++|++....|||||+++++|+|||+|.
T Consensus 487 ~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~ 533 (731)
T KOG0347|consen 487 DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQ 533 (731)
T ss_pred CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999983
No 32
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-40 Score=315.11 Aligned_cols=304 Identities=20% Similarity=0.255 Sum_probs=224.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhh-hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE
Q 019041 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li 105 (347)
+.|+++++++.+.+.+++.|+..|+|+|.++++. +..++|+++++|||+|||+++.++++..+.. +.+++|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~ 72 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALY 72 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEE
Confidence 4688999999999999999999999999999998 7789999999999999999999999988753 668999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh
Q 019041 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (347)
++|+++|+.|..+.+.++.. .++++..++|+...... ....++|+|+||+++...+......+.+++++|+||+|.
T Consensus 73 i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred EeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc
Confidence 99999999999999998754 47888888887654432 223579999999999888876666678899999999999
Q ss_pred hhccCChHHHHHHHhhc---CCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhcc---
Q 019041 186 MLDMGFEPQIRKIVTQI---RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY--- 259 (347)
Q Consensus 186 ~~~~~~~~~~~~~~~~~---~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 259 (347)
+.+.+++..+..++.++ .+..|++++|||++.. ..+.+++.................................
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~ 227 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVP 227 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCc
Confidence 88877877777765554 4678999999998653 3333333211100000000000000000000000000000
Q ss_pred -ccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCC------------------------------------C
Q 019041 260 -NSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG------------------------------------W 302 (347)
Q Consensus 260 -~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~------------------------------------~ 302 (347)
.......+.+. ...++++||||+++++++.++..|.+.. .
T Consensus 228 ~~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 228 SKDDTLNLVLDT---LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred cchHHHHHHHHH---HHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 01111122222 2357899999999999999988875321 3
Q ss_pred CceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 303 PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 303 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
.+..+|+++++.+|..+++.|++|.++|||||+.+++|+|+|.+
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~ 348 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPAR 348 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCce
Confidence 57788999999999999999999999999999999999999985
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.3e-40 Score=295.69 Aligned_cols=279 Identities=24% Similarity=0.327 Sum_probs=210.0
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.+|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. +..+||++|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999999999999998753 557999999999999999888764
Q ss_pred ccCCCceEEEEECCCCCchhh---Hhh-cCCCcEEEeChHHHHHHH--hcCCCCCCcccEEEEecchhhhccC--ChHHH
Q 019041 124 GSRAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDML--EAQHTNLRRVTYLVLDEADRMLDMG--FEPQI 195 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~--~~~~~~~~~~~~iIvDE~h~~~~~~--~~~~~ 195 (347)
++....+.++....+.. ..+ ....+|+++||+.+.... ........+++++|+||||.+.+++ |...+
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 66777777765543221 122 334799999999875321 1111135678999999999998876 56665
Q ss_pred HHH--HhhcCCCccEEEEEeecchhHHHHHHHhcC--CCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHH
Q 019041 196 RKI--VTQIRPDRQTLYWSATWPREVETLARQFLR--NPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLL 271 (347)
Q Consensus 196 ~~~--~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (347)
..+ +....+..+++++|||++......+...++ .+..+... .. .++. .+....... .....+...+
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~~---r~nl--~~~v~~~~~----~~~~~l~~~l 220 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-FD---RPNL--YYEVRRKTP----KILEDLLRFI 220 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-CC---CCCc--EEEEEeCCc----cHHHHHHHHH
Confidence 544 222336788999999999877655554433 33332221 11 1111 111111111 1333566666
Q ss_pred HhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 272 KEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 272 ~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+...++++||||+++++++.+++.|++.|+.+..+|+++++++|..+++.|.+|+.+|||||+++++|||+|+|+
T Consensus 221 ~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~ 296 (470)
T TIGR00614 221 RKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVR 296 (470)
T ss_pred HHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccce
Confidence 6555677889999999999999999999999999999999999999999999999999999999999999999985
No 34
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.8e-40 Score=307.84 Aligned_cols=302 Identities=21% Similarity=0.246 Sum_probs=228.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhh-hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEE
Q 019041 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (347)
Q Consensus 28 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil 106 (347)
.|+++++++.+.+.++..|+..|+++|.++++. +..++++++++|||+|||+++.++++..+... +.+++|+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 688899999999999999999999999999986 78899999999999999999999988877642 5689999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhh
Q 019041 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (347)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (347)
+|+++|+.|+.+.+..+. ..++++..++|+...... ....++|+|+||+++..++......+++++++|+||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998764 358888889888765432 2346899999999998888766666789999999999999
Q ss_pred hccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccc-cceeEEEecch--hccccHH
Q 019041 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQS-INQVVEVVTEA--EKYNSMF 263 (347)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~ 263 (347)
.+..++..+..++..+....|++++|||++. ...+.+ +++.... ............ ........... .+.....
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELV-VSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccc-cCCCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 8888888999999988888999999999865 344444 3332211 000000000000 00000001110 1111111
Q ss_pred HHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh---------------------------------CCCCceeecCC
Q 019041 264 ICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM---------------------------------DGWPALSIHGD 310 (347)
Q Consensus 264 ~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~---------------------------------~~~~~~~~~~~ 310 (347)
...+.+.+. .++++||||++++.++.++..|.+ ....+..+|++
T Consensus 228 ~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 228 ESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 222333333 467999999999999887766632 12357889999
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 311 KNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 311 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
+++++|..+.+.|++|.++|||||+.+++|+|+|.+
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~ 340 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAF 340 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCce
Confidence 999999999999999999999999999999999975
No 35
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-40 Score=271.26 Aligned_cols=313 Identities=33% Similarity=0.526 Sum_probs=270.2
Q ss_pred CCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCC
Q 019041 20 HDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE 99 (347)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~ 99 (347)
.+|.+-..+|+.++|++.++++++..||+.|+..|++|+..+.+|.++..++.+|+|||.+|..++++.+.....
T Consensus 19 sn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~k----- 93 (397)
T KOG0327|consen 19 SNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK----- 93 (397)
T ss_pred ccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchH-----
Confidence 445555668999999999999999999999999999999999999999999999999999999999998754332
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH-hhcCCCcEEEeChHHHHHHHhcCCCCCCcccEE
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR-DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (347)
...++++.|+++|+.|..+..+.++...+.++..+.|+.+...... .....++|+++||+.+...+....+....+.+.
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmf 173 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMF 173 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEE
Confidence 5579999999999999999999999999999998888887764433 344468999999999999998888877889999
Q ss_pred EEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhc
Q 019041 179 VLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEK 258 (347)
Q Consensus 179 IvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (347)
++||++.++..+|...+..+++.+++..|++++|||.+.++....+.++.+|..+.+...+.........++...... +
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k 252 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-K 252 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-c
Confidence 999999999999999999999999999999999999999999999999999999988887755333333333332222 2
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019041 259 YNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 338 (347)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 338 (347)
.. .+..+.. .-...++|||+++.+..+...|.+.++.+..+|+++.+.+|..++++|+.|..+|||+|+.++
T Consensus 253 ~~-----~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~a 324 (397)
T KOG0327|consen 253 LD-----TLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLA 324 (397)
T ss_pred cc-----HHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccc
Confidence 22 3334433 345789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcC
Q 019041 339 RGLGRITV 346 (347)
Q Consensus 339 ~Gidip~v 346 (347)
+|+|+-++
T Consensus 325 rgidv~~~ 332 (397)
T KOG0327|consen 325 RGIDVQQV 332 (397)
T ss_pred cccchhhc
Confidence 99999764
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.7e-39 Score=301.80 Aligned_cols=296 Identities=22% Similarity=0.277 Sum_probs=222.5
Q ss_pred ccc--CCCCHHHHHHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE
Q 019041 29 FQE--ANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (347)
Q Consensus 29 ~~~--~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li 105 (347)
|.. ++.+..+...++. +|+..+++.|+++|+.++.|+++++.+|||+|||++|++|++.. +..+||
T Consensus 437 W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLV 505 (1195)
T PLN03137 437 WSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLV 505 (1195)
T ss_pred ccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEE
Confidence 553 4566677777765 89999999999999999999999999999999999999999864 557999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH---hhc---CCCcEEEeChHHHHH--HHhcC---CCCCCc
Q 019041 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR---RGVEIVIATPGRLID--MLEAQ---HTNLRR 174 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~iiv~T~~~l~~--~~~~~---~~~~~~ 174 (347)
|+|+++|+.++...+.. .++....+.++....+... .+. ..++|+++||+++.. .+... ......
T Consensus 506 ISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 506 ISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred EeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 99999999876666655 3778888888776544322 221 458999999999852 11111 112245
Q ss_pred ccEEEEecchhhhccC--ChHHHHHH--HhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeE
Q 019041 175 VTYLVLDEADRMLDMG--FEPQIRKI--VTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVV 250 (347)
Q Consensus 175 ~~~iIvDE~h~~~~~~--~~~~~~~~--~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (347)
+.+|||||||++.+|+ |+..+..+ +....+..+++++|||+...+...+...++.......... ..+++. .+
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S--f~RpNL--~y 657 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS--FNRPNL--WY 657 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc--cCccce--EE
Confidence 8899999999999887 77777653 3444467889999999998877766555543322222211 111221 22
Q ss_pred EEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCE
Q 019041 251 EVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPI 330 (347)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 330 (347)
....... .....+..++.....+...||||.+++.++.++..|.+.|+.+..+||++++++|..+++.|..|+.+|
T Consensus 658 ~Vv~k~k----k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~V 733 (1195)
T PLN03137 658 SVVPKTK----KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINI 733 (1195)
T ss_pred EEeccch----hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcE
Confidence 2222111 122355566655555678999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCcCC
Q 019041 331 MTATDVAARGLGRITVC 347 (347)
Q Consensus 331 lv~T~~~~~Gidip~v~ 347 (347)
||||+++++|||+|+|+
T Consensus 734 LVATdAFGMGIDkPDVR 750 (1195)
T PLN03137 734 ICATVAFGMGINKPDVR 750 (1195)
T ss_pred EEEechhhcCCCccCCc
Confidence 99999999999999986
No 37
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.8e-39 Score=309.41 Aligned_cols=310 Identities=21% Similarity=0.222 Sum_probs=219.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCc-cCCCCCEEEEEcCcHHH
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL-VQGEGPIVLVLAPTREL 112 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~-~~~~~~~~lil~p~~~l 112 (347)
+++.+.+.+++ +|..|+++|.++++.+++|+|++++||||||||++++++++..+...... ...++.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 78888888877 68899999999999999999999999999999999999999887653211 11236789999999999
Q ss_pred HHHHHHHHHH-------h----ccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC--CCCcccEE
Q 019041 113 AVQIQEEALK-------F----GSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--NLRRVTYL 178 (347)
Q Consensus 113 ~~q~~~~~~~-------~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~i 178 (347)
+.|+.+.+.. + +... ++++..++|+.........+...++|+|+||+++...+..... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9998875542 2 2233 6788889999887776666777899999999999876654432 46789999
Q ss_pred EEecchhhhccCChHHHHHH----HhhcCCCccEEEEEeecchhHHHHHHHhcCC-----CeEEEeccccccccccccee
Q 019041 179 VLDEADRMLDMGFEPQIRKI----VTQIRPDRQTLYWSATWPREVETLARQFLRN-----PYKVIIGSLELKANQSINQV 249 (347)
Q Consensus 179 IvDE~h~~~~~~~~~~~~~~----~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 249 (347)
|+||+|.+.+...+..+... .....+..|++++|||++.. ......+.+. +....+........ ....
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~k~--~~i~ 253 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFVKP--FDIK 253 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCCcc--ceEE
Confidence 99999998876655444333 33333577999999998652 3333333221 21111111110000 0000
Q ss_pred EE-Eecc-hhccccHHHHHHHHHHHh-hcCCCeEEEEecCcccHHHHHHHHhhC------CCCceeecCCCCHHHHHHHH
Q 019041 250 VE-VVTE-AEKYNSMFICRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMD------GWPALSIHGDKNQSERDWVL 320 (347)
Q Consensus 250 ~~-~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~~lvf~~~~~~~~~~~~~L~~~------~~~~~~~~~~~~~~~r~~~~ 320 (347)
.. .... ...........+...+.+ ...++++||||++++.|+.++..|++. +..+..+||++++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 00 0000 000000111122222222 224678999999999999999999762 46789999999999999999
Q ss_pred HHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 321 AEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 321 ~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+.|++|+.++||||+++++|||+|+|+
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd 360 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYID 360 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCc
Confidence 999999999999999999999999874
No 38
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=272.94 Aligned_cols=311 Identities=34% Similarity=0.511 Sum_probs=280.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE
Q 019041 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (347)
Q Consensus 26 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li 105 (347)
.-.|+.+||+..+.+++...||..|+|.|+.-++.++++++++-.+-||+|||.+|++|+++++..... .+.++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~----~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQ----TGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccc----cccceee
Confidence 456999999999999999999999999999999999999999999999999999999999999887652 3789999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh
Q 019041 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (347)
+.|+++|+.|..+.++.++.+.+++...+.|+....+++..+..++|||++||..+....-.....++.+.++|+||++.
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999988988999999999999888777777889999999999999
Q ss_pred hhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHH
Q 019041 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFIC 265 (347)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (347)
+...+|...+..++..++..+|.+++|||+++.+..+.+..+.+|.-+.... +..........+......++..
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldv-etkise~lk~~f~~~~~a~K~a----- 249 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDV-ETKISELLKVRFFRVRKAEKEA----- 249 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeeh-hhhcchhhhhheeeeccHHHHH-----
Confidence 9999999999999999999999999999999999999999999998877433 2334444555555566555554
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.|+.++......++++||+.+..+++.+...|...|+.+..++|.+++.-|..-+..|+.++..++|.|+.+++|+|+|-
T Consensus 250 aLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 250 ALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPL 329 (529)
T ss_pred HHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcc
Confidence 67777777666678999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred C
Q 019041 346 V 346 (347)
Q Consensus 346 v 346 (347)
+
T Consensus 330 l 330 (529)
T KOG0337|consen 330 L 330 (529)
T ss_pred c
Confidence 5
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.9e-38 Score=292.67 Aligned_cols=288 Identities=22% Similarity=0.337 Sum_probs=211.9
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH
Q 019041 33 NFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (347)
Q Consensus 33 ~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~ 111 (347)
+.++...+.|+. +|+..++++|+++++.+++|+++++.+|||+|||++|++|++.. ...++|++|+++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~s 76 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLIS 76 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHH
Confidence 344455566665 89999999999999999999999999999999999999998864 456999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCCchhhH---hh-cCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 112 LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DL-RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 112 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
|+.|+.+.+... ++....+.++........ .. ....+++++||+.+........+...+++++|+||||++.
T Consensus 77 L~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 77 LMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred HHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccc
Confidence 999999988874 566666666654433221 11 2347899999999874222112233468999999999998
Q ss_pred ccC--ChHHHHHH--HhhcCCCccEEEEEeecchhHHHHHHHhcC--CCeEEEecccccccccccceeEEEecchhcccc
Q 019041 188 DMG--FEPQIRKI--VTQIRPDRQTLYWSATWPREVETLARQFLR--NPYKVIIGSLELKANQSINQVVEVVTEAEKYNS 261 (347)
Q Consensus 188 ~~~--~~~~~~~~--~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (347)
+++ |...+..+ +....+..+++++|||++......+...+. .|... ..... .++. .+.......
T Consensus 153 ~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~---r~nl--~~~v~~~~~---- 222 (607)
T PRK11057 153 QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNI--RYTLVEKFK---- 222 (607)
T ss_pred cccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCC---CCcc--eeeeeeccc----
Confidence 865 56555444 222235788999999998876554443332 33322 22111 1111 111111111
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCC
Q 019041 262 MFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGL 341 (347)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 341 (347)
....+...+.. ..++++||||+++++++.+++.|++.|+.+..+|+++++++|..+++.|..|+.+|||||+++++||
T Consensus 223 -~~~~l~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GI 300 (607)
T PRK11057 223 -PLDQLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGI 300 (607)
T ss_pred -hHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccC
Confidence 11234444443 3567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCC
Q 019041 342 GRITVC 347 (347)
Q Consensus 342 dip~v~ 347 (347)
|+|+|+
T Consensus 301 Dip~V~ 306 (607)
T PRK11057 301 NKPNVR 306 (607)
T ss_pred CCCCcC
Confidence 999985
No 40
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-38 Score=298.13 Aligned_cols=297 Identities=21% Similarity=0.274 Sum_probs=222.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEE
Q 019041 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil 106 (347)
+.|+++++++.+.+.+...++. |+++|.++++.+.+++++++++|||+|||+++.++++..+.. +.+++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i 71 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYI 71 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEE
Confidence 3578899999999999999995 999999999999999999999999999999999888877654 4579999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhh
Q 019041 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (347)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (347)
+|+++|+.|..+.+.++. ..+.++....|+...... ....++|+|+||+++...+.+....+.+++++|+||+|.+
T Consensus 72 ~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII 147 (674)
T ss_pred echHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc
Confidence 999999999999998764 357788888877654332 2246799999999998888776666788999999999998
Q ss_pred hccCChHHHHHHHhh---cCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeE----EEecchhcc
Q 019041 187 LDMGFEPQIRKIVTQ---IRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVV----EVVTEAEKY 259 (347)
Q Consensus 187 ~~~~~~~~~~~~~~~---~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 259 (347)
.+..++..+..++.. ..+..|++++|||++.. ..+.+ +++.... .. .. .+.+...... .........
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~-~~-~~--r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLI-KS-NF--RPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCcc-CC-CC--CCCCeEEEEEecCeeeecccccc
Confidence 877777777766544 35678999999998653 34444 3332211 00 00 0000000000 001111111
Q ss_pred ccHHHHHHHHHHHh-hcCCCeEEEEecCcccHHHHHHHHhhC-------------------------CCCceeecCCCCH
Q 019041 260 NSMFICRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMD-------------------------GWPALSIHGDKNQ 313 (347)
Q Consensus 260 ~~~~~~~l~~~~~~-~~~~~~~lvf~~~~~~~~~~~~~L~~~-------------------------~~~~~~~~~~~~~ 313 (347)
.. .+..++.+ ...++++||||++++.++.++..|.+. ...+..+|+++++
T Consensus 222 ~~----~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~ 297 (674)
T PRK01172 222 QV----DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSN 297 (674)
T ss_pred cc----cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCH
Confidence 11 12223332 345789999999999999999888542 1246788999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 314 SERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 314 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
++|..+.+.|++|..+|||||+++++|+|+|+.
T Consensus 298 ~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~ 330 (674)
T PRK01172 298 EQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR 330 (674)
T ss_pred HHHHHHHHHHHcCCCeEEEecchhhccCCCcce
Confidence 999999999999999999999999999999974
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.3e-38 Score=293.06 Aligned_cols=282 Identities=21% Similarity=0.309 Sum_probs=213.3
Q ss_pred HHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH
Q 019041 40 EVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (347)
Q Consensus 40 ~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 118 (347)
+.|+. +|+..++++|.++++.++.|+++++.+|||+|||++|+++++.. +..++|++|+++|+.|+.+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHH
Confidence 34554 89999999999999999999999999999999999999998754 4568999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCCchhhH----hhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC--Ch
Q 019041 119 EALKFGSRAGIRSTCIYGGAPKGPQIR----DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG--FE 192 (347)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~--~~ 192 (347)
.+..+ ++.+..++++....+... ......+++++||+.+............+++++|+||||.+.+++ |.
T Consensus 72 ~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 72 QLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccH
Confidence 88875 667777877765443321 123468999999999865433333345679999999999998765 66
Q ss_pred HHHHHHHhhc--CCCccEEEEEeecchhHHHHHHHhcCCCeE-EEecccccccccccceeEEEecchhccccHHHHHHHH
Q 019041 193 PQIRKIVTQI--RPDRQTLYWSATWPREVETLARQFLRNPYK-VIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIK 269 (347)
Q Consensus 193 ~~~~~~~~~~--~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (347)
..+..+.... .+..+++++|||++......+...+..+.. ...... ..++ ..+.......+ ...+.+
T Consensus 148 p~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~n--l~~~v~~~~~~-----~~~l~~ 217 (591)
T TIGR01389 148 PEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSF---DRPN--LRFSVVKKNNK-----QKFLLD 217 (591)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC---CCCC--cEEEEEeCCCH-----HHHHHH
Confidence 6665553222 245569999999988877666665543221 111111 1111 12222222221 224555
Q ss_pred HHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 270 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 270 ~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+... .++++||||++++.++.+++.|...|+.+..+|++++.++|..+++.|..|+.+|||||+++++|||+|+|+
T Consensus 218 ~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~ 294 (591)
T TIGR01389 218 YLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVR 294 (591)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCC
Confidence 55543 367899999999999999999999999999999999999999999999999999999999999999999985
No 42
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=290.09 Aligned_cols=306 Identities=23% Similarity=0.249 Sum_probs=238.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHH
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 113 (347)
++|.+++.++.. |..|++.|.++++.+.+|+|+++.||||||||.++++|++..+.........++-.+|||+|-++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 899999999998 8999999999999999999999999999999999999999999887422233467899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC--CCCcccEEEEecchhhhccCC
Q 019041 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--NLRRVTYLVLDEADRMLDMGF 191 (347)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~iIvDE~h~~~~~~~ 191 (347)
..+...+..++...|+.+...+|+....+..+...+.++|+++||++|.-.+..... .+.++.++|+||+|.+.....
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999999999988888999999999999999877654332 477899999999999887654
Q ss_pred hHHHH----HHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecch----hccccHH
Q 019041 192 EPQIR----KIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEA----EKYNSMF 263 (347)
Q Consensus 192 ~~~~~----~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 263 (347)
+..+. ++.... ...|.|++|||..+ .....+.+.+......+..... .......+...... .......
T Consensus 167 G~~Lsl~LeRL~~l~-~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~--~k~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 167 GVQLALSLERLRELA-GDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA--AKKLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred chhhhhhHHHHHhhC-cccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc--CCcceEEEEecCCccccccchhHHH
Confidence 43333 333333 37899999999864 4445555544431222211111 11111111111111 1111223
Q ss_pred HHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCC-CCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCC
Q 019041 264 ICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG-WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLG 342 (347)
Q Consensus 264 ~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 342 (347)
...+.+++++ .+.+|||+|++..++.++..|++.+ ..+..+||.++.+.|..+.++|++|+++.+|||+.++-|||
T Consensus 243 ~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGID 319 (814)
T COG1201 243 YERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319 (814)
T ss_pred HHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccc
Confidence 3344444444 4589999999999999999998876 78999999999999999999999999999999999999999
Q ss_pred CCcCC
Q 019041 343 RITVC 347 (347)
Q Consensus 343 ip~v~ 347 (347)
+-+|.
T Consensus 320 iG~vd 324 (814)
T COG1201 320 IGDID 324 (814)
T ss_pred cCCce
Confidence 98763
No 43
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.1e-37 Score=282.08 Aligned_cols=323 Identities=14% Similarity=0.150 Sum_probs=213.9
Q ss_pred hHHHHHhhhccceeeccCCCCCCccccccCCCCHHHHHHHHHCC--CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 3 ETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLG--FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
.+++.++++..++...-++...+...+....+++++.......+ ...|+++|.+++..++.++++++++|||+|||.+
T Consensus 66 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i 145 (501)
T PHA02558 66 VGQLKKFAKNRGYSIWVDPRIEENEDISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLI 145 (501)
T ss_pred HHHHHHHHHhcCCeEecCcccccCCCCCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHH
Confidence 36778888888888766444333333322233334444333322 3489999999999999999999999999999987
Q ss_pred hHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHH
Q 019041 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~ 160 (347)
+...+ ...... ...++||++|+++|+.||.+.+.+++......+..+.+|.... .+.+|+|+|+++
T Consensus 146 ~~~l~-~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qs 211 (501)
T PHA02558 146 QYLLS-RYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQS 211 (501)
T ss_pred HHHHH-HHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHH
Confidence 65432 222221 1348999999999999999999998765455555666665432 247899999999
Q ss_pred HHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHH--HHHhcCCCeEEEeccc
Q 019041 161 LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETL--ARQFLRNPYKVIIGSL 238 (347)
Q Consensus 161 l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~--~~~~~~~~~~~~~~~~ 238 (347)
+.+... ..+.+++++|+||||++... .+..++..+++..++++|||||.+..... ...++++ ....+...
T Consensus 212 l~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~ 283 (501)
T PHA02558 212 AVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGD-IFKPVTTS 283 (501)
T ss_pred Hhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCC-ceEEecHH
Confidence 876432 23578999999999998653 45566666656778999999996543211 1122332 11111111
Q ss_pred ccccccc-cce-e--EEE-ecch-------hcc---------ccHHHHHHHHHHHhh-cCCCeEEEEecCcccHHHHHHH
Q 019041 239 ELKANQS-INQ-V--VEV-VTEA-------EKY---------NSMFICRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQ 296 (347)
Q Consensus 239 ~~~~~~~-~~~-~--~~~-~~~~-------~~~---------~~~~~~~l~~~~~~~-~~~~~~lvf~~~~~~~~~~~~~ 296 (347)
+...... ... . +.. .... ..+ .......+....... ..+++++|||.++++++.+++.
T Consensus 284 ~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~ 363 (501)
T PHA02558 284 QLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEM 363 (501)
T ss_pred HHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHH
Confidence 0000000 000 0 000 0000 000 000011122222222 2467899999999999999999
Q ss_pred HhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEe-cccccCCCCCcCC
Q 019041 297 LRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAARGLGRITVC 347 (347)
Q Consensus 297 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidip~v~ 347 (347)
|++.|.++..+||+++.++|..+++.|+.|+..||||| +++++|||+|+++
T Consensus 364 L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 364 LKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 99999999999999999999999999999999999999 8999999999974
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.8e-37 Score=291.65 Aligned_cols=284 Identities=19% Similarity=0.198 Sum_probs=211.8
Q ss_pred CCHHHHHHHH-HCCCCCCcHHHHhhHhhhhcC------CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEE
Q 019041 34 FPDYCLEVIA-KLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (347)
Q Consensus 34 l~~~~~~~l~-~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil 106 (347)
.++.+.+.+. .++| .|++.|..+++.+.++ .+.+++||||+|||.+++.+++..+.. +.+++|+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 3445555555 4788 5999999999999874 689999999999999999998887764 5689999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh---hHhhcC-CCcEEEeChHHHHHHHhcCCCCCCcccEEEEec
Q 019041 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (347)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (347)
+||++|+.|+.+.+.++....++++..++++....+. ...+.. .++|+|+||..+ .....+.+++++|+||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDE 581 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeec
Confidence 9999999999999998877778888888887654332 223333 489999999433 2345678899999999
Q ss_pred chhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccH
Q 019041 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSM 262 (347)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (347)
+|++ +......+..+.+..++++|||||.+...........++..+...... ...+...+... . ...
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~--~---~~~ 648 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEY--D---PEL 648 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEec--C---HHH
Confidence 9984 444556666677788999999998765444433333344333322211 11111111111 1 111
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC--CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccC
Q 019041 263 FICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARG 340 (347)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 340 (347)
.... +..+...+++++|||+++++++.+++.|++. +.++..+||+|++.+|..++++|++|+.+|||||+++++|
T Consensus 649 i~~~---i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~G 725 (926)
T TIGR00580 649 VREA---IRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETG 725 (926)
T ss_pred HHHH---HHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcc
Confidence 1111 2233445789999999999999999999874 7889999999999999999999999999999999999999
Q ss_pred CCCCcCC
Q 019041 341 LGRITVC 347 (347)
Q Consensus 341 idip~v~ 347 (347)
+|+|+++
T Consensus 726 IDIp~v~ 732 (926)
T TIGR00580 726 IDIPNAN 732 (926)
T ss_pred cccccCC
Confidence 9999985
No 45
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.6e-38 Score=272.71 Aligned_cols=320 Identities=28% Similarity=0.418 Sum_probs=270.5
Q ss_pred CCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCC
Q 019041 20 HDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE 99 (347)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~ 99 (347)
+=.+.....|+.+.+...+..+|+..+|..|+++|..+|+.+..+-+.||++-.|+|||++|...+++.+..+. .
T Consensus 18 DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~-----~ 92 (980)
T KOG4284|consen 18 DVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS-----S 92 (980)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc-----C
Confidence 33556667799999999999999999999999999999999999999999999999999999888887765543 2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccC-CCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEE
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSR-AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (347)
..+++|++||++++.|+.+.+.+++.. .|+++..+.||.........+. .++|+|+||+++..+++...++.++++++
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEE
Confidence 668999999999999999999998774 5899999999998776655554 46899999999999999999999999999
Q ss_pred EEecchhhhc-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchh
Q 019041 179 VLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (347)
Q Consensus 179 IvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (347)
|+|||+.+.+ ..|...+..++..++..+|++++|||-++.+......++.+|..+..+....... .+..++.......
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~-GikQyv~~~~s~n 250 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLF-GIKQYVVAKCSPN 250 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceee-chhheeeeccCCc
Confidence 9999999988 5699999999999999999999999999999999999999999888776654333 3334443333322
Q ss_pred cccc---HHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019041 258 KYNS---MFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 334 (347)
Q Consensus 258 ~~~~---~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 334 (347)
.... ...+.|-+++..+ +-...||||+....|+.++.+|+..|+++..++|.|++.+|..+++.++.-..+|||+|
T Consensus 251 nsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred chHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 1111 1222233333332 44588999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcCC
Q 019041 335 DVAARGLGRITVC 347 (347)
Q Consensus 335 ~~~~~Gidip~v~ 347 (347)
+..++|||-|++|
T Consensus 330 DLtaRGIDa~~vN 342 (980)
T KOG4284|consen 330 DLTARGIDADNVN 342 (980)
T ss_pred chhhccCCccccc
Confidence 9999999999986
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2e-36 Score=291.79 Aligned_cols=283 Identities=19% Similarity=0.197 Sum_probs=214.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhHhhhhcC------CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 35 PDYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
+++..+....++| .|++.|.++++.++.+ .+++++++||+|||.+++.++...+.. +.+++|++|
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLvP 657 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLVP 657 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEeC
Confidence 3455556667899 7999999999998886 789999999999999888777665443 678999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHh---hc-CCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecch
Q 019041 109 TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD---LR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (347)
Q Consensus 109 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (347)
+++|+.|+.+.+.+.....++++..+.++.+..+.... +. ..++|+|+||+.+. ....+.+++++|+||+|
T Consensus 658 T~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 658 TTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEH 732 (1147)
T ss_pred cHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechh
Confidence 99999999999998666667888888887765544332 22 35899999996442 23456789999999999
Q ss_pred hhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHH
Q 019041 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFI 264 (347)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (347)
++ +......++.+++..+++++|||+.+....+....+.++..+...... ............. ...
T Consensus 733 rf-----G~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~-----~~~- 798 (1147)
T PRK10689 733 RF-----GVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDS-----LVV- 798 (1147)
T ss_pred hc-----chhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCc-----HHH-
Confidence 96 223345566677789999999998877666666666666655432221 1111111111111 011
Q ss_pred HHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC--CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCC
Q 019041 265 CRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLG 342 (347)
Q Consensus 265 ~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 342 (347)
...++.+...+++++|||++++.++.+++.|++. +.++..+||+|++.+|..++++|++|+.+|||||+++++|+|
T Consensus 799 --k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGID 876 (1147)
T PRK10689 799 --REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 (1147)
T ss_pred --HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccc
Confidence 1122333345689999999999999999999876 778999999999999999999999999999999999999999
Q ss_pred CCcCC
Q 019041 343 RITVC 347 (347)
Q Consensus 343 ip~v~ 347 (347)
+|+++
T Consensus 877 IP~v~ 881 (1147)
T PRK10689 877 IPTAN 881 (1147)
T ss_pred cccCC
Confidence 99986
No 47
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.3e-36 Score=278.08 Aligned_cols=292 Identities=20% Similarity=0.197 Sum_probs=210.3
Q ss_pred HHHHHH-CCCCCCcHHHHhhHhhhhcCC-cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHH
Q 019041 39 LEVIAK-LGFVEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (347)
Q Consensus 39 ~~~l~~-~~~~~~~~~Q~~~i~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 116 (347)
.+.+.+ .||. |+|+|.++++.++.|+ ++++++|||||||.++.+..+.. .... ....++++++|+++|+.|+
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~----~~~~rLv~~vPtReLa~Qi 78 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGA----KVPRRLVYVVNRRTVVDQV 78 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccc----cccceEEEeCchHHHHHHH
Confidence 334444 5886 9999999999999998 67888999999998665444422 1111 1123555577999999999
Q ss_pred HHHHHHhccCC-----------------------CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHh-cC----
Q 019041 117 QEEALKFGSRA-----------------------GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLE-AQ---- 168 (347)
Q Consensus 117 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~-~~---- 168 (347)
.+.+.+++... ++.+..++||.....++..+..+++|+|+|++.+.+-.. +.
T Consensus 79 ~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~ 158 (844)
T TIGR02621 79 TEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCG 158 (844)
T ss_pred HHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccc
Confidence 99999887654 488999999999989999998899999999765543211 00
Q ss_pred ----CC---CCCcccEEEEecchhhhccCChHHHHHHHhhc--CC---CccEEEEEeecchhHHHHHHHhcCCCeEEEec
Q 019041 169 ----HT---NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RP---DRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (347)
Q Consensus 169 ----~~---~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~---~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~ 236 (347)
.+ .+++..++|+|||| +..+|...+..+++.. ++ .+|+++||||++.........+..++....+.
T Consensus 159 ~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~ 236 (844)
T TIGR02621 159 FKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVL 236 (844)
T ss_pred cccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecc
Confidence 00 25778999999999 5677999999999864 22 26999999999887777777776666554443
Q ss_pred ccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHH
Q 019041 237 SLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSER 316 (347)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r 316 (347)
..... ......++ ......+.. .....+..... ..++++||||++++.++.+++.|++.++ ..+||.+++.+|
T Consensus 237 ~~~l~-a~ki~q~v-~v~~e~Kl~-~lv~~L~~ll~--e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR 309 (844)
T TIGR02621 237 KKRLA-AKKIVKLV-PPSDEKFLS-TMVKELNLLMK--DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAER 309 (844)
T ss_pred ccccc-ccceEEEE-ecChHHHHH-HHHHHHHHHHh--hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHH
Confidence 22211 11112221 111111111 11112222222 3567899999999999999999998876 899999999999
Q ss_pred H-----HHHHHHhc----CC-------CCEEEEecccccCCCCCc
Q 019041 317 D-----WVLAEFRS----GR-------SPIMTATDVAARGLGRIT 345 (347)
Q Consensus 317 ~-----~~~~~f~~----g~-------~~vlv~T~~~~~Gidip~ 345 (347)
. .+++.|++ |. .+|||||+++++|+|++.
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~ 354 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA 354 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc
Confidence 9 78999987 43 679999999999999985
No 48
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-37 Score=264.53 Aligned_cols=334 Identities=31% Similarity=0.429 Sum_probs=272.3
Q ss_pred HhhhccceeeccCCCCCCcccccc----CCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHH
Q 019041 8 MYRARREITVEGHDVPRPIRIFQE----ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~ 83 (347)
..++.+++.+.+...|.|+..|.. ...++.++.++...+|..|++.|.++++.++.+++++.|+|||+|||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 457788999999999999999998 4679999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc--cCCCceEEEEECCCCCchhh-HhhcCCCcEEEeChHH
Q 019041 84 PAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG--SRAGIRSTCIYGGAPKGPQI-RDLRRGVEIVIATPGR 160 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~T~~~ 160 (347)
|++.++..........+-+++|+.|+++|+.|.+.++.++. ...+.+...........+.. ......++++++||-.
T Consensus 193 Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~r 272 (593)
T KOG0344|consen 193 PILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR 272 (593)
T ss_pred HHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHH
Confidence 99999887654333447799999999999999999999987 44444444443332222111 1112247999999999
Q ss_pred HHHHHhcCC--CCCCcccEEEEecchhhhcc-CChHHHHHHHhhcC-CCccEEEEEeecchhHHHHHHHhcCCCeEEEec
Q 019041 161 LIDMLEAQH--TNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIR-PDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (347)
Q Consensus 161 l~~~~~~~~--~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~-~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~ 236 (347)
+...+.... +.+.++..+|+||++.+.+. .|..++..++.... +..++-++|||.+..++...+.....+..+.+.
T Consensus 273 i~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg 352 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG 352 (593)
T ss_pred HHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe
Confidence 999887765 57889999999999999888 78888888877664 445667999999999999999998888888887
Q ss_pred ccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHH-hhCCCCceeecCCCCHHH
Q 019041 237 SLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQL-RMDGWPALSIHGDKNQSE 315 (347)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~ 315 (347)
..+..................+.. .+.+++... -..++|||+.+.+.|.+++..| .-.++.+.++||+-++.+
T Consensus 353 ~~~sa~~~V~QelvF~gse~~K~l-----A~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 353 LRNSANETVDQELVFCGSEKGKLL-----ALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQ 426 (593)
T ss_pred cchhHhhhhhhhheeeecchhHHH-----HHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhH
Confidence 665443333344444445444443 455555554 3358999999999999999999 667889999999999999
Q ss_pred HHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 316 RDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 316 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
|.+.+++|+.|++.|||||+++++|+|+.++|
T Consensus 427 rde~~~~FR~g~IwvLicTdll~RGiDf~gvn 458 (593)
T KOG0344|consen 427 RDETMERFRIGKIWVLICTDLLARGIDFKGVN 458 (593)
T ss_pred HHHHHHHHhccCeeEEEehhhhhccccccCcc
Confidence 99999999999999999999999999999886
No 49
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-37 Score=257.28 Aligned_cols=313 Identities=26% Similarity=0.425 Sum_probs=239.2
Q ss_pred CCccccccCCCCHHHHHH----------HHHCCCCCCcHHHHhhHhhhhc---------CCcEEEEcCCCCchhHHhHHH
Q 019041 24 RPIRIFQEANFPDYCLEV----------IAKLGFVEPTPIQAQGWPMALK---------GRDLIGIAETGSGKTLSYLLP 84 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~----------l~~~~~~~~~~~Q~~~i~~~~~---------~~~~lv~~~tGsGKT~~~~~~ 84 (347)
.....|+.++.++..... +..+++..+.|.|...++.++. .++++|.||||||||++|.+|
T Consensus 124 nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iP 203 (620)
T KOG0350|consen 124 NSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIP 203 (620)
T ss_pred CceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhH
Confidence 333446666666655554 8899999999999999888753 478999999999999999999
Q ss_pred HHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCC-----CcEEEeChH
Q 019041 85 AFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRG-----VEIVIATPG 159 (347)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~iiv~T~~ 159 (347)
+++.+...+. +..|++||+|+++|+.|+++.+.++++..++.++.+.|..+-..+.+.+... .+|+|+||+
T Consensus 204 IVQ~L~~R~v----~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPG 279 (620)
T KOG0350|consen 204 IVQLLSSRPV----KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPG 279 (620)
T ss_pred HHHHHccCCc----cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCch
Confidence 9999988653 2468999999999999999999999999999999999998877776666442 389999999
Q ss_pred HHHHHHh-cCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcC----------------------------------C
Q 019041 160 RLIDMLE-AQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR----------------------------------P 204 (347)
Q Consensus 160 ~l~~~~~-~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~----------------------------------~ 204 (347)
+|.+.+. ...++++++.++||||++++.+..|..++..++.... +
T Consensus 280 RLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~ 359 (620)
T KOG0350|consen 280 RLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYP 359 (620)
T ss_pred HHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCc
Confidence 9999998 5567899999999999999987765555554443332 1
Q ss_pred CccEEEEEeecchhHHHHHHHhcCCCeEEEeccc---ccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEE
Q 019041 205 DRQTLYWSATWPREVETLARQFLRNPYKVIIGSL---ELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRIL 281 (347)
Q Consensus 205 ~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 281 (347)
....+.+|||+...-..+...-+..|....+... ....+....+....... +.... .+..++.. ....++|
T Consensus 360 ~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~--~~kpl---~~~~lI~~-~k~~r~l 433 (620)
T KOG0350|consen 360 PLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP--KFKPL---AVYALITS-NKLNRTL 433 (620)
T ss_pred hhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccc--ccchH---hHHHHHHH-hhcceEE
Confidence 2236788888887777777777777755544421 12222223333222222 22222 23333332 2456999
Q ss_pred EEecCcccHHHHHHHHh----hCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 282 IFTETKKGCDQVTRQLR----MDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 282 vf~~~~~~~~~~~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
+|+++.+.+..++..|+ +....+..++|..+...|..+++.|+.|++++|||++++++|+|+-+|
T Consensus 434 cf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v 502 (620)
T KOG0350|consen 434 CFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502 (620)
T ss_pred EEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccccc
Confidence 99999999999999887 334567779999999999999999999999999999999999999876
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.2e-35 Score=276.85 Aligned_cols=280 Identities=22% Similarity=0.283 Sum_probs=202.0
Q ss_pred HHHHHHHCCCCCCcHHHHhhHhhhhcC------CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH
Q 019041 38 CLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (347)
Q Consensus 38 ~~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~ 111 (347)
+.+....++| .|++.|.++++.+.++ .+.+++||||||||++|+++++..+.. +.+++|++|+++
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaPT~~ 321 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAPTEI 321 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEeccHH
Confidence 3344455888 7999999999998876 479999999999999999999887754 678999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCCchh---hHhhcC-CCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 112 LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 112 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
|+.|+.+.++++....++++..++|+....+. ...+.. .++|+|+|+..+.+ ...+.+++++|+||+|++
T Consensus 322 LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrf- 395 (681)
T PRK10917 322 LAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRF- 395 (681)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhh-
Confidence 99999999999988888999999999875433 223333 48999999976643 334678999999999985
Q ss_pred ccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHH
Q 019041 188 DMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRL 267 (347)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (347)
+...+..+.......++++|||||.+....+. ..+......+... ......+... ..... .. . .+
T Consensus 396 ----g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~-p~~r~~i~~~--~~~~~-~~-~----~~ 460 (681)
T PRK10917 396 ----GVEQRLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDEL-PPGRKPITTV--VIPDS-RR-D----EV 460 (681)
T ss_pred ----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecC-CCCCCCcEEE--EeCcc-cH-H----HH
Confidence 33333344444456889999999876533322 2333222222211 1111111111 11111 11 1 22
Q ss_pred HHHH-HhhcCCCeEEEEecCccc--------HHHHHHHHhhC--CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019041 268 IKLL-KEVMDGSRILIFTETKKG--------CDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 336 (347)
Q Consensus 268 ~~~~-~~~~~~~~~lvf~~~~~~--------~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 336 (347)
.+.+ .....+++++|||+.+++ ++.+++.|.+. ++++..+||++++.+|..++++|++|+.+|||||++
T Consensus 461 ~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 540 (681)
T PRK10917 461 YERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTV 540 (681)
T ss_pred HHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcc
Confidence 2222 233457899999996543 45667777665 578999999999999999999999999999999999
Q ss_pred cccCCCCCcCC
Q 019041 337 AARGLGRITVC 347 (347)
Q Consensus 337 ~~~Gidip~v~ 347 (347)
+++|+|+|+++
T Consensus 541 ie~GiDip~v~ 551 (681)
T PRK10917 541 IEVGVDVPNAT 551 (681)
T ss_pred eeeCcccCCCc
Confidence 99999999974
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=8.8e-35 Score=269.54 Aligned_cols=283 Identities=21% Similarity=0.278 Sum_probs=200.8
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhHhhhhcC------CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc
Q 019041 36 DYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (347)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 109 (347)
+.+.+.+..++| .|++.|+++++.+..+ .+.+++||||||||.+++++++..+.. +.+++|++|+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT 293 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPT 293 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCH
Confidence 445556677899 8999999999998875 368999999999999999988887764 6689999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCCCCchh---hHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh
Q 019041 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (347)
Q Consensus 110 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (347)
++|+.|+.+.+.++....++++..++|+...... ...+. ..++|+|+|+..+.+ ...+.+++++|+||+|+
T Consensus 294 ~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhh
Confidence 9999999999999988889999999998876543 22222 357999999987653 34567899999999998
Q ss_pred hhccCChHHHHHHHhhcC--CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHH
Q 019041 186 MLDMGFEPQIRKIVTQIR--PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMF 263 (347)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~--~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (347)
+... ....+..... ..++++++|||+.+..... ...+......+.... ........ ........
T Consensus 369 fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p-~~r~~i~~--~~~~~~~~----- 434 (630)
T TIGR00643 369 FGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELP-PGRKPITT--VLIKHDEK----- 434 (630)
T ss_pred ccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCC-CCCCceEE--EEeCcchH-----
Confidence 5221 1122222222 2578999999986643322 222222111111110 00111111 11111111
Q ss_pred HHHHHHHHH-hhcCCCeEEEEecCcc--------cHHHHHHHHhh--CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEE
Q 019041 264 ICRLIKLLK-EVMDGSRILIFTETKK--------GCDQVTRQLRM--DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMT 332 (347)
Q Consensus 264 ~~~l~~~~~-~~~~~~~~lvf~~~~~--------~~~~~~~~L~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 332 (347)
..+...+. ....+++++|||+..+ .++.+++.|.+ .++.+..+||++++++|..+++.|++|+.+|||
T Consensus 435 -~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 513 (630)
T TIGR00643 435 -DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILV 513 (630)
T ss_pred -HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 12333333 3345779999998774 35566777765 367899999999999999999999999999999
Q ss_pred EecccccCCCCCcCC
Q 019041 333 ATDVAARGLGRITVC 347 (347)
Q Consensus 333 ~T~~~~~Gidip~v~ 347 (347)
||+++++|+|+|+++
T Consensus 514 aT~vie~GvDiP~v~ 528 (630)
T TIGR00643 514 ATTVIEVGVDVPNAT 528 (630)
T ss_pred ECceeecCcccCCCc
Confidence 999999999999974
No 52
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=7.8e-35 Score=281.38 Aligned_cols=278 Identities=23% Similarity=0.307 Sum_probs=202.5
Q ss_pred HHHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHH
Q 019041 39 LEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (347)
Q Consensus 39 ~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 117 (347)
.+.++. .|+ .|+++|+.+++.++.|++++++||||+|||. +++++...+.. .+.+++||+||++|+.|+.
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHH
Confidence 334444 567 8999999999999999999999999999996 55454444332 2678999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCC-----chhhHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc---
Q 019041 118 EEALKFGSRAGIRSTCIYGGAPK-----GPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD--- 188 (347)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~--- 188 (347)
+.+++++...++.+..+.++... ......+. ..++|+|+||+.+.+.+. .+....++++|+||||+++.
T Consensus 141 ~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhccc
Confidence 99999988888888777766542 11222333 358999999999998776 34445699999999999885
Q ss_pred --------cCCh-HHHHHHHhhcCC------------------------CccEEEEEeecchh-HHHHHHHhcCCCeEEE
Q 019041 189 --------MGFE-PQIRKIVTQIRP------------------------DRQTLYWSATWPRE-VETLARQFLRNPYKVI 234 (347)
Q Consensus 189 --------~~~~-~~~~~~~~~~~~------------------------~~~~i~lsaT~~~~-~~~~~~~~~~~~~~~~ 234 (347)
.+|. ..+..++..++. ..|++++|||+++. ... .++..+..+.
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~ 295 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFE 295 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEE
Confidence 3464 566666655543 57899999999753 322 1223333343
Q ss_pred ecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCccc---HHHHHHHHhhCCCCceeecCCC
Q 019041 235 IGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKG---CDQVTRQLRMDGWPALSIHGDK 311 (347)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~---~~~~~~~L~~~~~~~~~~~~~~ 311 (347)
+..... ...++.+.+.... + ....+.+++... +.++||||++.+. ++.+++.|+..|+++..+||++
T Consensus 296 v~~~~~-~~rnI~~~yi~~~--~-----k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 296 VGSPVF-YLRNIVDSYIVDE--D-----SVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred ecCccc-ccCCceEEEEEcc--c-----HHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 333221 1222233222222 1 222455555543 4589999999888 9999999999999999999998
Q ss_pred CHHHHHHHHHHHhcCCCCEEEE----ecccccCCCCCc
Q 019041 312 NQSERDWVLAEFRSGRSPIMTA----TDVAARGLGRIT 345 (347)
Q Consensus 312 ~~~~r~~~~~~f~~g~~~vlv~----T~~~~~Gidip~ 345 (347)
.+.+++|++|+.+|||| |+++++|||+|+
T Consensus 366 -----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~ 398 (1176)
T PRK09401 366 -----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPE 398 (1176)
T ss_pred -----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCc
Confidence 23459999999999999 689999999999
No 53
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.5e-35 Score=246.51 Aligned_cols=293 Identities=22% Similarity=0.208 Sum_probs=210.5
Q ss_pred CCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
+..++|.||.......+.+ |.+++.|||.|||+++++.+..++...+ + ++|+++||+.|+.|..+.+.++..
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------G-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC------C-eEEEecCCchHHHHHHHHHHHHhC
Confidence 3458899999999886666 9999999999999999998888888753 3 899999999999999999999877
Q ss_pred CCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCC
Q 019041 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD 205 (347)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~ 205 (347)
...-.+..+.|.....+....+ ...+|+|+||+.+...+..+.+++.+++++|+||||+.......-.+....-.....
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred CChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 7777888999888776554444 457999999999999999999999999999999999987654333444433344466
Q ss_pred ccEEEEEeecchhHHHH---HHHhcCCCeEEEeccccc------------------------------------------
Q 019041 206 RQTLYWSATWPREVETL---ARQFLRNPYKVIIGSLEL------------------------------------------ 240 (347)
Q Consensus 206 ~~~i~lsaT~~~~~~~~---~~~~~~~~~~~~~~~~~~------------------------------------------ 240 (347)
+.+++|||||..+.+.. ++.+......+.......
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 78999999988764432 222222111111111000
Q ss_pred -----cc---ccc------cceeEEEec----------------------------------------------------
Q 019041 241 -----KA---NQS------INQVVEVVT---------------------------------------------------- 254 (347)
Q Consensus 241 -----~~---~~~------~~~~~~~~~---------------------------------------------------- 254 (347)
.. ... .........
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 00 000 000000000
Q ss_pred ------------------chhccccHHHHHHHHHHHhh---cCCCeEEEEecCcccHHHHHHHHhhCCCCce-eec----
Q 019041 255 ------------------EAEKYNSMFICRLIKLLKEV---MDGSRILIFTETKKGCDQVTRQLRMDGWPAL-SIH---- 308 (347)
Q Consensus 255 ------------------~~~~~~~~~~~~l~~~~~~~---~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~-~~~---- 308 (347)
............+.+++++. .++.+++||++.+++|+.+.+.|.+.|..+. .+-
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 00001111223344444332 2456999999999999999999999988774 333
Q ss_pred ----CCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 309 ----GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 309 ----~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+|++.++.+++++|+.|+.+|||||+++++|+|+|++.
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vD 445 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVD 445 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCccc
Confidence 369999999999999999999999999999999999974
No 54
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=266.78 Aligned_cols=302 Identities=22% Similarity=0.252 Sum_probs=228.6
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhc-CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcH
Q 019041 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (347)
Q Consensus 32 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 110 (347)
..+++.+.+.++..++.++.+.|+.++..... ++|+++++|||+|||+++.++++..+.+. +.+++++||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 34888999999999999999999999987655 59999999999999999999999988874 56899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC
Q 019041 111 ELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG 190 (347)
Q Consensus 111 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~ 190 (347)
+|+.+..++++++ ...|+++...+|+...... ...+++|+|+||+++-...++....+..++++|+||+|.+.+..
T Consensus 87 ALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 87 ALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 9999999999933 5579999999999876553 22368999999999998888777778899999999999888776
Q ss_pred ChHHHHHHHhhcC---CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhc--cccHHHH
Q 019041 191 FEPQIRKIVTQIR---PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEK--YNSMFIC 265 (347)
Q Consensus 191 ~~~~~~~~~~~~~---~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 265 (347)
.++.+..+..+.+ ...|++++|||++. ..++..++-.++..-................+.......+ .......
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 6666666655553 34799999999865 4555565555544222333322223333333333332222 0111111
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh---------------------C----------------CCCceeec
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM---------------------D----------------GWPALSIH 308 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~---------------------~----------------~~~~~~~~ 308 (347)
.+...+.....++.+||||++++.+...++.+.+ . -..+..+|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 2333344555688999999999999999988873 0 02245778
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 309 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 309 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.+++.++|..+.+.|+.|.++||+||+.++.|+|.|.
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA 358 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPA 358 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcc
Confidence 9999999999999999999999999999999999995
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-34 Score=253.43 Aligned_cols=284 Identities=22% Similarity=0.317 Sum_probs=216.7
Q ss_pred HHHHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHH
Q 019041 38 CLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (347)
Q Consensus 38 ~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 116 (347)
+...|+. +|+..+++.|+++|+.+++++++++.+|||.|||++|.+|++-. ...+|||+|..+|...+
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQ 73 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHH
Confidence 3355766 89999999999999999999999999999999999999998876 34699999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCCchhh---HhhcC-CCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC--
Q 019041 117 QEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-- 190 (347)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-- 190 (347)
.+.+... |+....+.+.-+..+.. ..+.. ..++++-+|+.+........+.-..+.+++|||||.+.+|+
T Consensus 74 V~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhd 149 (590)
T COG0514 74 VDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHD 149 (590)
T ss_pred HHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCc
Confidence 9999875 67777777775444332 22222 37999999999865432222224568899999999999997
Q ss_pred ChHHHHHHHhhc--CCCccEEEEEeecchhHHHHHHHhcCCCe-EEEecccccccccccceeEEEecchhccccHHHHHH
Q 019041 191 FEPQIRKIVTQI--RPDRQTLYWSATWPREVETLARQFLRNPY-KVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRL 267 (347)
Q Consensus 191 ~~~~~~~~~~~~--~~~~~~i~lsaT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (347)
|++.+..+-... -+..+++++|||..+.+...+...+.... ..+....+ ++++...+.... .... .+
T Consensus 150 FRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~--~~~~-----q~ 219 (590)
T COG0514 150 FRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKG--EPSD-----QL 219 (590)
T ss_pred cCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---Cchhhhhhhhcc--cHHH-----HH
Confidence 888888774333 24778999999999888777766555433 22222221 222221111111 1111 12
Q ss_pred HHHHH--hhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 268 IKLLK--EVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 268 ~~~~~--~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
. .+. ....++..||||.|++.++.+++.|...|+.+..+|++++.++|..+.++|..++.+|+|||.++++|||-||
T Consensus 220 ~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpd 298 (590)
T COG0514 220 A-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPD 298 (590)
T ss_pred H-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCC
Confidence 2 222 2345567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 019041 346 VC 347 (347)
Q Consensus 346 v~ 347 (347)
||
T Consensus 299 VR 300 (590)
T COG0514 299 VR 300 (590)
T ss_pred ce
Confidence 86
No 56
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.2e-33 Score=275.72 Aligned_cols=285 Identities=22% Similarity=0.254 Sum_probs=203.6
Q ss_pred HHHHHHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHH
Q 019041 36 DYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (347)
Q Consensus 36 ~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 114 (347)
.++.+.++. +|+ .|++.|+.+++.+++|+++++.||||+|||+.++.+++.... .+.+++|++|+++|+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHH
Confidence 344555665 899 699999999999999999999999999999855544443321 1668999999999999
Q ss_pred HHHHHHHHhccCC--CceEEEEECCCCCchhh---HhhcC-CCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc
Q 019041 115 QIQEEALKFGSRA--GIRSTCIYGGAPKGPQI---RDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (347)
Q Consensus 115 q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (347)
|+.+.+..++... ++++..++|+.+..+.. ..+.. .++|+|+||+.+...+.... ..+++++|+||||.+++
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~--~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK--HLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh--hCCCCEEEEECceeccc
Confidence 9999999987654 46677788887655442 23333 48999999999887665421 26789999999999876
Q ss_pred -----------cCChHHHHH----HHh----------------------hcCCCcc-EEEEEeecchhHHHHHHHhcCCC
Q 019041 189 -----------MGFEPQIRK----IVT----------------------QIRPDRQ-TLYWSATWPREVETLARQFLRNP 230 (347)
Q Consensus 189 -----------~~~~~~~~~----~~~----------------------~~~~~~~-~i~lsaT~~~~~~~~~~~~~~~~ 230 (347)
.+|...+.. ++. .+++..+ .+.+|||++... . ...++..+
T Consensus 215 ~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~-~-~~~l~~~~ 292 (1638)
T PRK14701 215 ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG-D-RVKLYREL 292 (1638)
T ss_pred cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh-H-HHHHhhcC
Confidence 357666653 221 1233445 567999987531 1 12334555
Q ss_pred eEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCccc---HHHHHHHHhhCCCCceee
Q 019041 231 YKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKG---CDQVTRQLRMDGWPALSI 307 (347)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~---~~~~~~~L~~~~~~~~~~ 307 (347)
..+.+.... ....+..+.+.......+ ..+.+++... +..+||||++.+. |+.+++.|.+.|+++..+
T Consensus 293 l~f~v~~~~-~~lr~i~~~yi~~~~~~k------~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~ 363 (1638)
T PRK14701 293 LGFEVGSGR-SALRNIVDVYLNPEKIIK------EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELV 363 (1638)
T ss_pred eEEEecCCC-CCCCCcEEEEEECCHHHH------HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEe
Confidence 555554332 122222222222222211 2455666553 5689999999876 589999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEe----cccccCCCCCc-CC
Q 019041 308 HGDKNQSERDWVLAEFRSGRSPIMTAT----DVAARGLGRIT-VC 347 (347)
Q Consensus 308 ~~~~~~~~r~~~~~~f~~g~~~vlv~T----~~~~~Gidip~-v~ 347 (347)
|++ |...+++|++|+.+||||| +++++|||+|+ |+
T Consensus 364 h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vr 403 (1638)
T PRK14701 364 SAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIR 403 (1638)
T ss_pred cch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccC
Confidence 994 8889999999999999999 58999999998 54
No 57
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=9.5e-33 Score=236.62 Aligned_cols=305 Identities=23% Similarity=0.270 Sum_probs=227.1
Q ss_pred CccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhh-hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEE
Q 019041 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (347)
+..+..++++++.+.+.|+..|+.++.|.|.-++++ +++|+|.+|.++|+||||++.-++-+..+... +.+.
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~Km 264 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKM 264 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeE
Confidence 345678899999999999999999999999999986 77899999999999999998888877777663 7789
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCC----CchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEE
Q 019041 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAP----KGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLV 179 (347)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 179 (347)
|+++|..+|+.|-++.|++--..+++.+..-.|... ...........+||||+|++-+=..++.+ ..+.+++.+|
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVV 343 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVV 343 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEE
Confidence 999999999999999988644556666544443322 11122333446899999999988877776 5578999999
Q ss_pred EecchhhhccCChH---HHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecch
Q 019041 180 LDEADRMLDMGFEP---QIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEA 256 (347)
Q Consensus 180 vDE~h~~~~~~~~~---~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (347)
+||+|.+.+...+. -+..-++++-+..|.|++|||.... ..+++.+...+..+.- .+.+...+.+......
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~ 417 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFARNES 417 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeecCch
Confidence 99999887755443 3334455566789999999997543 4455544333322211 1122222222222233
Q ss_pred hccccHHHHHHHH-HHHhh---cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEE
Q 019041 257 EKYNSMFICRLIK-LLKEV---MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMT 332 (347)
Q Consensus 257 ~~~~~~~~~~l~~-~~~~~---~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 332 (347)
.+-+ .+..+.+ ..... .-.+++|||++|++.|..++..|...|+++..+|++++..+|+.+...|.++++.++|
T Consensus 418 eK~~--ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VV 495 (830)
T COG1202 418 EKWD--IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVV 495 (830)
T ss_pred HHHH--HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEe
Confidence 3322 2222222 11111 1235899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccCCCCCc
Q 019041 333 ATDVAARGLGRIT 345 (347)
Q Consensus 333 ~T~~~~~Gidip~ 345 (347)
+|.+++.|+|.|.
T Consensus 496 TTAAL~AGVDFPA 508 (830)
T COG1202 496 TTAALAAGVDFPA 508 (830)
T ss_pred ehhhhhcCCCCch
Confidence 9999999999995
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.7e-33 Score=270.21 Aligned_cols=275 Identities=22% Similarity=0.254 Sum_probs=192.9
Q ss_pred EEcCCCCchhHHhHHHHHHhhhcCCCc-----cCCCCCEEEEEcCcHHHHHHHHHHHHHhc------------cCCCceE
Q 019041 69 GIAETGSGKTLSYLLPAFVHVSAQPRL-----VQGEGPIVLVLAPTRELAVQIQEEALKFG------------SRAGIRS 131 (347)
Q Consensus 69 v~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~~~lil~p~~~l~~q~~~~~~~~~------------~~~~~~~ 131 (347)
|++|||||||++|.++++..+...+.. ....+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999888754311 11235789999999999999998876411 1247889
Q ss_pred EEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC-CCCCCcccEEEEecchhhhccCC----hHHHHHHHhhcCCCc
Q 019041 132 TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDEADRMLDMGF----EPQIRKIVTQIRPDR 206 (347)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE~h~~~~~~~----~~~~~~~~~~~~~~~ 206 (347)
..++|+.+..+..+.+.+.++|+|+||+++..++.+. ...++++++|||||+|.+....+ ...+.++........
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999887776666778999999999998876543 23578999999999999886543 344555555555678
Q ss_pred cEEEEEeecchhHHHHHHHhcCC-CeEEEecccccccccccceeEEEecchhcc---------------ccHHHHHH-HH
Q 019041 207 QTLYWSATWPREVETLARQFLRN-PYKVIIGSLELKANQSINQVVEVVTEAEKY---------------NSMFICRL-IK 269 (347)
Q Consensus 207 ~~i~lsaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l-~~ 269 (347)
|+|++|||+.. .+...+.+.+. +..+ +.... .........+ ........ .......+ ..
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~I-v~~~~-~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTV-VNPPA-MRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEE-ECCCC-CcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 99999999976 34555444333 3333 22111 1111111111 11110000 00000011 12
Q ss_pred HHHhhcCCCeEEEEecCcccHHHHHHHHhhCC---------------------------------CCceeecCCCCHHHH
Q 019041 270 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDG---------------------------------WPALSIHGDKNQSER 316 (347)
Q Consensus 270 ~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~---------------------------------~~~~~~~~~~~~~~r 316 (347)
++.....++++|||||++..|+.++..|++.. ..+..+||++++++|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 33333456799999999999999999997531 114678999999999
Q ss_pred HHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 317 DWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 317 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
..+++.|++|++++||||+.++.|||+|+|.
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VD 347 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVD 347 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCC
Confidence 9999999999999999999999999999874
No 59
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.3e-32 Score=266.44 Aligned_cols=279 Identities=21% Similarity=0.306 Sum_probs=196.4
Q ss_pred HHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH
Q 019041 39 LEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (347)
Q Consensus 39 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 118 (347)
.+.+.......|+++|+.+++.++.|++++++||||+|||. |++++...+.. .+.+++|++|+++|+.|+.+
T Consensus 68 ~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 68 EEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHHH
Confidence 33444433448999999999999999999999999999996 55565555433 16789999999999999999
Q ss_pred HHHHhccCCCceEE---EEECCCCCchh---hHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc---
Q 019041 119 EALKFGSRAGIRST---CIYGGAPKGPQ---IRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD--- 188 (347)
Q Consensus 119 ~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~--- 188 (347)
.+.++....++.+. .++|+.+..+. ...+. .+++|+|+||+.+.+.+.... . +++++|+||||+++.
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k 216 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASK 216 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccc
Confidence 99998877665543 45677655432 22233 358999999999988766422 1 799999999999987
Q ss_pred --------cCChHH-HHHHH----------------------hhcCCCcc--EEEEEee-cchhHHHHHHHhcCCCeEEE
Q 019041 189 --------MGFEPQ-IRKIV----------------------TQIRPDRQ--TLYWSAT-WPREVETLARQFLRNPYKVI 234 (347)
Q Consensus 189 --------~~~~~~-~~~~~----------------------~~~~~~~~--~i~lsaT-~~~~~~~~~~~~~~~~~~~~ 234 (347)
.+|... +..++ +..+...| ++++||| .+..... .++..+..+.
T Consensus 217 ~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~ 293 (1171)
T TIGR01054 217 NVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFE 293 (1171)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceE
Confidence 356543 34332 22233344 5678999 4443321 2334444444
Q ss_pred ecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCc---ccHHHHHHHHhhCCCCceeecCCC
Q 019041 235 IGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETK---KGCDQVTRQLRMDGWPALSIHGDK 311 (347)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~---~~~~~~~~~L~~~~~~~~~~~~~~ 311 (347)
+..... ...++...+.... .+ ...+.+++... +.++||||+++ +.++.+++.|++.|+++..+||++
T Consensus 294 v~~~~~-~~r~I~~~~~~~~--~~-----~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~ 363 (1171)
T TIGR01054 294 VGGGSD-TLRNVVDVYVEDE--DL-----KETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATK 363 (1171)
T ss_pred ecCccc-cccceEEEEEecc--cH-----HHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCC
Confidence 433221 1222222221111 11 12455555553 46899999999 999999999999999999999998
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEe----cccccCCCCCc
Q 019041 312 NQSERDWVLAEFRSGRSPIMTAT----DVAARGLGRIT 345 (347)
Q Consensus 312 ~~~~r~~~~~~f~~g~~~vlv~T----~~~~~Gidip~ 345 (347)
+ +.+++.|++|+.+||||| +++++|+|+|+
T Consensus 364 ~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~ 397 (1171)
T TIGR01054 364 P----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPE 397 (1171)
T ss_pred C----HHHHHHHHcCCCCEEEEeccccCcccccCCCCc
Confidence 7 368899999999999995 89999999999
No 60
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=9.4e-33 Score=245.05 Aligned_cols=274 Identities=20% Similarity=0.194 Sum_probs=183.0
Q ss_pred CCcHHHHhhHhhhhc----CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|++||+++++.+.+ .+.+++++|||+|||.+++..+... ...+|||||+.+|+.||.+.+.++.
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 799999999999988 8899999999999999877666554 4459999999999999998877754
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCC
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (347)
... ..+..+.++...... ..|.|+|++++...........+.+++||+|||||+.+.. ...+...+..
T Consensus 105 ~~~-~~~g~~~~~~~~~~~-------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~~ 172 (442)
T COG1061 105 LLN-DEIGIYGGGEKELEP-------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLSA 172 (442)
T ss_pred CCc-cccceecCceeccCC-------CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhhc
Confidence 432 123333333322111 3699999999988532222233479999999999985443 3444444433
Q ss_pred CccEEEEEeecchhHHH---HHHHhcCCCeEEEeccccccc-----ccccceeEE-Eecch-------------------
Q 019041 205 DRQTLYWSATWPREVET---LARQFLRNPYKVIIGSLELKA-----NQSINQVVE-VVTEA------------------- 256 (347)
Q Consensus 205 ~~~~i~lsaT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~------------------- 256 (347)
...+++|||||.+.... ....+++ +..+.....+.-. +........ .....
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 33399999997754311 1222222 2222222111100 000000000 00000
Q ss_pred -----------hccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhc
Q 019041 257 -----------EKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 325 (347)
Q Consensus 257 -----------~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 325 (347)
..........+...+.....+.+++|||.++.++..++..+...|. +..++++++..+|..+++.|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 0000111122233333322467999999999999999999988887 8899999999999999999999
Q ss_pred CCCCEEEEecccccCCCCCcCC
Q 019041 326 GRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 326 g~~~vlv~T~~~~~Gidip~v~ 347 (347)
|++++|+++.++.+|+|+|+++
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~ 352 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDAD 352 (442)
T ss_pred CCCCEEEEeeeccceecCCCCc
Confidence 9999999999999999999974
No 61
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=5.4e-32 Score=218.50 Aligned_cols=202 Identities=54% Similarity=0.875 Sum_probs=180.3
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 29 FQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 29 ~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||++++++++..+..... ..+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~---~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK---KDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc---cCCceEEEEcC
Confidence 678999999999999999999999999999999999999999999999999999999988877521 12678999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc
Q 019041 109 TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (347)
Q Consensus 109 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (347)
+++|+.|+.+.+.++....++.+..+.|+....+....+..+++|+|+|++.+...+......+.+++++|+||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999888778888999998877666666666889999999999998888777888999999999999888
Q ss_pred cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEE
Q 019041 189 MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKV 233 (347)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~ 233 (347)
.++...+..+.+.+...++++++|||+++....+...++.++..+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 888889999999988899999999999999988888888877653
No 62
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=244.60 Aligned_cols=304 Identities=23% Similarity=0.203 Sum_probs=207.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHH
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 113 (347)
+++.......--..-.+|.||.+++...+ ++|++|++|||+|||++++..+..++...+ +.++++++|++.|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHH
Confidence 44444444433344589999999999888 999999999999999999999999988876 57899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCC-CCcccEEEEecchhhhccC-C
Q 019041 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN-LRRVTYLVLDEADRMLDMG-F 191 (347)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-~~~~~~iIvDE~h~~~~~~-~ 191 (347)
.|+...+..++.. .......++.........+....+|++.||+.+...+...... ++.+.++||||||+..... +
T Consensus 120 ~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y 197 (746)
T KOG0354|consen 120 NQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY 197 (746)
T ss_pred HHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH
Confidence 9999888887665 4455555554443443455567899999999999888766554 4889999999999987655 4
Q ss_pred hHHHHHHHhhcCCCccEEEEEeecchhHHHHH---HHhcCCCeEEEeccc------------------------------
Q 019041 192 EPQIRKIVTQIRPDRQTLYWSATWPREVETLA---RQFLRNPYKVIIGSL------------------------------ 238 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~---~~~~~~~~~~~~~~~------------------------------ 238 (347)
...++..+.......|+++|||||........ ..++.. ..+.....
T Consensus 198 ~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~ 276 (746)
T KOG0354|consen 198 NNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFG 276 (746)
T ss_pred HHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHH
Confidence 55555665555555599999999876533211 111111 00000000
Q ss_pred ---------------------c-----------ccccccc--cee--E--------------------------------
Q 019041 239 ---------------------E-----------LKANQSI--NQV--V-------------------------------- 250 (347)
Q Consensus 239 ---------------------~-----------~~~~~~~--~~~--~-------------------------------- 250 (347)
. .....+. ... +
T Consensus 277 ~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~ 356 (746)
T KOG0354|consen 277 MIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYE 356 (746)
T ss_pred HHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcc
Confidence 0 0000000 000 0
Q ss_pred ---------------------------EEecchhccccHHHHHHHHHHHh---hcCCCeEEEEecCcccHHHHHHHHhh-
Q 019041 251 ---------------------------EVVTEAEKYNSMFICRLIKLLKE---VMDGSRILIFTETKKGCDQVTRQLRM- 299 (347)
Q Consensus 251 ---------------------------~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~lvf~~~~~~~~~~~~~L~~- 299 (347)
................+.+.+.+ ..+..++|||+.+++.|..+.+.|..
T Consensus 357 e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~ 436 (746)
T KOG0354|consen 357 EVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL 436 (746)
T ss_pred ccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh
Confidence 00000000111122333333332 23456999999999999999999873
Q ss_pred --CCCCceeecC--------CCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 300 --DGWPALSIHG--------DKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 300 --~~~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.|++...+.| +|++.++.++++.|++|+.+|||||+++++|+|||.|+
T Consensus 437 ~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~ 494 (746)
T KOG0354|consen 437 HELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECN 494 (746)
T ss_pred hhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCccccc
Confidence 3445555544 58999999999999999999999999999999999985
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.9e-31 Score=249.84 Aligned_cols=272 Identities=18% Similarity=0.198 Sum_probs=197.4
Q ss_pred HHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH-HhccCCCce
Q 019041 52 PIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGIR 130 (347)
Q Consensus 52 ~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~ 130 (347)
.+-.++++.+..+++++++|+||||||..+..+++..... +.+++++.|+++++.|+.+.+. .++...+..
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~--------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI--------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc--------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 3445667777788999999999999999988888876421 4589999999999999999885 455555666
Q ss_pred EEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh-hhccCChH-HHHHHHhhcCCCccE
Q 019041 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR-MLDMGFEP-QIRKIVTQIRPDRQT 208 (347)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~-~~~~~~~~-~~~~~~~~~~~~~~~ 208 (347)
+.+..++... .....+|+|+|++.+++.+... ..++++++||+||+|. ..+.++.. .+..+...+++..++
T Consensus 77 VGy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql 149 (819)
T TIGR01970 77 VGYRVRGENK------VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKI 149 (819)
T ss_pred EEEEEccccc------cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceE
Confidence 6655554322 2235789999999999988763 4688999999999994 56655543 334555666778899
Q ss_pred EEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcc
Q 019041 209 LYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKK 288 (347)
Q Consensus 209 i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~ 288 (347)
++||||+.... ...+++++..+...... ..+...+.......+........+...+.. ..+++|||+++.+
T Consensus 150 IlmSATl~~~~---l~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ 220 (819)
T TIGR01970 150 LAMSATLDGER---LSSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQA 220 (819)
T ss_pred EEEeCCCCHHH---HHHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHH
Confidence 99999998643 35566654444332211 112222222222221111112223333333 3578999999999
Q ss_pred cHHHHHHHHhh---CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 289 GCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 289 ~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+++.+++.|++ .++.+..+||+++.++|..+++.|.+|..+|||||+++++|||+|+|+
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~ 282 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIR 282 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCce
Confidence 99999999986 478899999999999999999999999999999999999999999984
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.6e-31 Score=250.80 Aligned_cols=272 Identities=17% Similarity=0.229 Sum_probs=196.4
Q ss_pred HHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH-HhccCCCce
Q 019041 52 PIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGIR 130 (347)
Q Consensus 52 ~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~ 130 (347)
.+-.++++.+.++++++++|+||||||.++.+++++.... ..+++|+.|+++++.|+.+.+. .++...+..
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 3445667777788999999999999999988888765321 3479999999999999999885 455556767
Q ss_pred EEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh-hhccCC-hHHHHHHHhhcCCCccE
Q 019041 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR-MLDMGF-EPQIRKIVTQIRPDRQT 208 (347)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~-~~~~~~-~~~~~~~~~~~~~~~~~ 208 (347)
+.+..++..... ...+|+|+|++.+.+.+.. ...++++++||+||+|. ..+.++ ...+..+++.+++..|+
T Consensus 80 VGy~vr~~~~~~------~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 80 VGYRMRAESKVG------PNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 (812)
T ss_pred EEEEecCccccC------CCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceE
Confidence 777666554322 2468999999999998775 34688999999999996 333332 22344556667788899
Q ss_pred EEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcc
Q 019041 209 LYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKK 288 (347)
Q Consensus 209 i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~ 288 (347)
++||||+... ....+++++..+...... ..+...+.......+........+...+.. .++.+|||+++.+
T Consensus 153 ilmSATl~~~---~l~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ 223 (812)
T PRK11664 153 LIMSATLDND---RLQQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVG 223 (812)
T ss_pred EEEecCCCHH---HHHHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHH
Confidence 9999999764 234566654444332111 112222222222222111111223333332 3579999999999
Q ss_pred cHHHHHHHHhh---CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 289 GCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 289 ~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+++.+++.|.+ .++.+..+||+++.++|..+++.|.+|+.+|||||+++++|||+|+|+
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~ 285 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIR 285 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCce
Confidence 99999999986 577889999999999999999999999999999999999999999984
No 65
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-31 Score=243.95 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=180.1
Q ss_pred CCcHHHHhhHhhhhcC---CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 49 EPTPIQAQGWPMALKG---RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~---~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
.||+||.+++..+..+ ++.++++|||+|||++++..+... +.++|||||+..|+.||.+.+.+|..
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 6899999999988743 478999999999999877655433 44699999999999999999999865
Q ss_pred CCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC--------CCCCCcccEEEEecchhhhccCChHHHHH
Q 019041 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ--------HTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (347)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--------~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (347)
.....+..+.|+.... ......|+|+|++++.....+. .+....+++||+||||++.. ..+..
T Consensus 324 l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~ 394 (732)
T TIGR00603 324 IDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRR 394 (732)
T ss_pred CCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHH
Confidence 4455666666653321 1123689999999875422111 12224689999999999844 44555
Q ss_pred HHhhcCCCccEEEEEeecchhHHH--HHHHhcCCCeEEEecccccc-----ccccc-ceeEEEecc----------hh--
Q 019041 198 IVTQIRPDRQTLYWSATWPREVET--LARQFLRNPYKVIIGSLELK-----ANQSI-NQVVEVVTE----------AE-- 257 (347)
Q Consensus 198 ~~~~~~~~~~~i~lsaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~----------~~-- 257 (347)
++..+ .....++|||||.+.... .+..+++ |..+...-.+.. .+... ...+..... ..
T Consensus 395 il~~l-~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 395 VLTIV-QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HHHhc-CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 55555 345689999999754322 2223333 222222211110 00000 000000000 00
Q ss_pred ---ccccHHHHHHHHHHHhh-cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcC-CCCEEE
Q 019041 258 ---KYNSMFICRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG-RSPIMT 332 (347)
Q Consensus 258 ---~~~~~~~~~l~~~~~~~-~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv 332 (347)
..+......+..++..+ ..+.++||||.+.+++..+++.|. +..+||++++.+|..+++.|+.| ..++||
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 00111222333344433 267799999999999999988883 45689999999999999999875 789999
Q ss_pred EecccccCCCCCcCC
Q 019041 333 ATDVAARGLGRITVC 347 (347)
Q Consensus 333 ~T~~~~~Gidip~v~ 347 (347)
+|+++++|||+|+++
T Consensus 548 ~SkVgdeGIDlP~a~ 562 (732)
T TIGR00603 548 LSKVGDTSIDLPEAN 562 (732)
T ss_pred EecccccccCCCCCC
Confidence 999999999999975
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.8e-31 Score=228.23 Aligned_cols=274 Identities=15% Similarity=0.128 Sum_probs=180.0
Q ss_pred HHHhhHhhhhcCCc--EEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccC----
Q 019041 53 IQAQGWPMALKGRD--LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR---- 126 (347)
Q Consensus 53 ~Q~~~i~~~~~~~~--~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~---- 126 (347)
+|.++++.+.++.+ +++++|||+|||.+++++++.. +.++++++|+++|+.|+.+.+.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 69999999998864 7889999999999998887742 446899999999999999988876532
Q ss_pred CCceEEEEECCCCCc--------------hh----hH--hhcCCCcEEEeChHHHHHHHhcCCC--------CCCcccEE
Q 019041 127 AGIRSTCIYGGAPKG--------------PQ----IR--DLRRGVEIVIATPGRLIDMLEAQHT--------NLRRVTYL 178 (347)
Q Consensus 127 ~~~~~~~~~~~~~~~--------------~~----~~--~~~~~~~iiv~T~~~l~~~~~~~~~--------~~~~~~~i 178 (347)
.+..+..+.|....+ +. .+ .....+.|++|||+.+...+..... .+.+++++
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 355666666642211 00 00 0123578999999998765543211 14678999
Q ss_pred EEecchhhhccCC-----hHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHh--cCCCeEEEecccccc--------cc
Q 019041 179 VLDEADRMLDMGF-----EPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF--LRNPYKVIIGSLELK--------AN 243 (347)
Q Consensus 179 IvDE~h~~~~~~~-----~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~ 243 (347)
|+||+|.+..+.. ......++.......+++++|||++..+...+... ++.+........-.. ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 9999998764331 11222333333335799999999988777766654 343332221110000 00
Q ss_pred ---------cccceeEEEecchhccccHHHHHHHHHHHhh---cCCCeEEEEecCcccHHHHHHHHhhCC--CCceeecC
Q 019041 244 ---------QSINQVVEVVTEAEKYNSMFICRLIKLLKEV---MDGSRILIFTETKKGCDQVTRQLRMDG--WPALSIHG 309 (347)
Q Consensus 244 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~lvf~~~~~~~~~~~~~L~~~~--~~~~~~~~ 309 (347)
+.....+.. .. .........+.+.+.+. .+++++||||++++.++.+++.|++.+ ..+..+||
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~--~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-AP--DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccceeccceEEEEEe-CC--chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 112222211 11 11111222333333221 256799999999999999999998765 46788999
Q ss_pred CCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 310 DKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 310 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
.+++.+|.+. ++.+|||||+++++|+|+|.+
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~ 337 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD 337 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc
Confidence 9999888654 478999999999999999875
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6.8e-32 Score=236.66 Aligned_cols=264 Identities=19% Similarity=0.172 Sum_probs=173.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCC-----
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK----- 140 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~----- 140 (347)
++++.+|||+|||.+++.+++..+... .+.++++++|+++|+.|+.+.+..+... .+..++++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 478999999999999999988775442 2568999999999999999999886221 23333332210
Q ss_pred ------chh-hHhh------cCCCcEEEeChHHHHHHHhcCCC----CC--CcccEEEEecchhhhccCChHHHHHHHhh
Q 019041 141 ------GPQ-IRDL------RRGVEIVIATPGRLIDMLEAQHT----NL--RRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (347)
Q Consensus 141 ------~~~-~~~~------~~~~~iiv~T~~~l~~~~~~~~~----~~--~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (347)
... .... ....+|+++||+++...+..... .+ -..+++|+||+|.+....+.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 000 0000 12367999999999877655211 11 123799999999987654333 4444444
Q ss_pred cC-CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeE
Q 019041 202 IR-PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRI 280 (347)
Q Consensus 202 ~~-~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 280 (347)
+. ...|++++|||++..+..+.......+.......... .......+.......... ...+..++.....++++
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~ 225 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE--RRFERHRFIKIESDKVGE---ISSLERLLEFIKKGGKI 225 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc--cccccccceeeccccccC---HHHHHHHHHHhhCCCeE
Confidence 43 4689999999998766666554433211111110000 000011111111111111 11333444444567899
Q ss_pred EEEecCcccHHHHHHHHhhCCC--CceeecCCCCHHHHHH----HHHHHhcCCCCEEEEecccccCCCCC
Q 019041 281 LIFTETKKGCDQVTRQLRMDGW--PALSIHGDKNQSERDW----VLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 281 lvf~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
||||+++++++.+++.|++.+. .+..+||++++.+|.+ +++.|++|+.+|||||+++++|+|+|
T Consensus 226 lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~ 295 (358)
T TIGR01587 226 AIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS 295 (358)
T ss_pred EEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC
Confidence 9999999999999999988766 4899999999999976 48899999999999999999999997
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.5e-31 Score=248.21 Aligned_cols=302 Identities=22% Similarity=0.264 Sum_probs=222.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHH
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 113 (347)
.+..+..++.+.|...|+.||.+++..+.+|++++|+.|||||||.+|++|++..+.+.+ ..++|+|.|+++|+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhH
Confidence 455567888899999999999999999999999999999999999999999999999876 44799999999999
Q ss_pred HHHHHHHHHhccCCC--ceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC----CCCcccEEEEecchhhh
Q 019041 114 VQIQEEALKFGSRAG--IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT----NLRRVTYLVLDEADRML 187 (347)
Q Consensus 114 ~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~----~~~~~~~iIvDE~h~~~ 187 (347)
..+.+.+.++....+ +.+...+|+....+....+.+.++|++|||+++...+..... .++++.+||+||+|...
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999888776 777777777777666567788899999999999885533322 35678999999999532
Q ss_pred ccCChH----HHHHHHhhc---CCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecc---hh
Q 019041 188 DMGFEP----QIRKIVTQI---RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE---AE 257 (347)
Q Consensus 188 ~~~~~~----~~~~~~~~~---~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 257 (347)
..++. .+++++..+ ....|+++.|||.... ..+...+.+......+......... ..+..... ..
T Consensus 209 -Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~---~~~~~~~p~~~~~ 283 (851)
T COG1205 209 -GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGL---RYFVRREPPIREL 283 (851)
T ss_pred -ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCc---eEEEEeCCcchhh
Confidence 22333 333333333 3578999999997543 4556666666555533322211111 11111111 00
Q ss_pred cc--ccHHHHHHHHHHH-hhcCCCeEEEEecCcccHHHHH----HHHhhCC----CCceeecCCCCHHHHHHHHHHHhcC
Q 019041 258 KY--NSMFICRLIKLLK-EVMDGSRILIFTETKKGCDQVT----RQLRMDG----WPALSIHGDKNQSERDWVLAEFRSG 326 (347)
Q Consensus 258 ~~--~~~~~~~l~~~~~-~~~~~~~~lvf~~~~~~~~~~~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g 326 (347)
.. .......+..+.. ....+-++|+|+.+...++.+. ..+...+ ..+..+++.++.++|..+...|+.|
T Consensus 284 ~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g 363 (851)
T COG1205 284 AESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG 363 (851)
T ss_pred hhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC
Confidence 00 0111112222222 2225679999999999999997 4444455 5688899999999999999999999
Q ss_pred CCCEEEEecccccCCCCCcC
Q 019041 327 RSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 327 ~~~vlv~T~~~~~Gidip~v 346 (347)
+..++++|++++-|+|+-++
T Consensus 364 ~~~~~~st~AlelgidiG~l 383 (851)
T COG1205 364 ELLGVIATNALELGIDIGSL 383 (851)
T ss_pred CccEEecchhhhhceeehhh
Confidence 99999999999999999765
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.98 E-value=7.3e-31 Score=240.33 Aligned_cols=278 Identities=19% Similarity=0.191 Sum_probs=187.2
Q ss_pred HHHHhhHhhhhcCCcEEEEcCCCCchhHH---------hHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 52 PIQAQGWPMALKGRDLIGIAETGSGKTLS---------YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 52 ~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~---------~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
..|+++++.++++++++++|+||+|||.+ |+++.+..+..-. ......++++++|+++|+.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 47888999999999999999999999975 2222333322100 011256899999999999999988876
Q ss_pred hccC---CCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHH
Q 019041 123 FGSR---AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 199 (347)
Q Consensus 123 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~ 199 (347)
.... .+..+...+|+... ........+.+++++|+.. ....+++++++|+||||.....+ +.+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHH
Confidence 5433 35667778888763 2212222357899999642 11246789999999999876543 4455555
Q ss_pred hhcC-CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecch--hc--cccHHHHHHHHHHHhh
Q 019041 200 TQIR-PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEA--EK--YNSMFICRLIKLLKEV 274 (347)
Q Consensus 200 ~~~~-~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~ 274 (347)
+... ..+|+++||||++.+...+ ..+++++..+.+... ....+...+...... .. +.......+...+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~ 390 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY 390 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh
Confidence 4443 3358999999998777666 567777776665321 112222222111100 00 0000011223333322
Q ss_pred --cCCCeEEEEecCcccHHHHHHHHhhC--CCCceeecCCCCHHHHHHHHHHH-hcCCCCEEEEecccccCCCCCcCC
Q 019041 275 --MDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEF-RSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 275 --~~~~~~lvf~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
..++.+|||+++++.++.+++.|.+. ++.+..+||++++. ++.+++| ++|+.+|||||+++++|+|+|+|+
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 23568999999999999999999876 78999999999974 4666777 689999999999999999999984
No 70
>PRK13766 Hef nuclease; Provisional
Probab=99.98 E-value=7.3e-30 Score=244.41 Aligned_cols=293 Identities=25% Similarity=0.258 Sum_probs=202.4
Q ss_pred CCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
+..++++||+.++...+.+ ++++++|||+|||+++++++...+.. .+.++||++|+++|+.||.+.++++..
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 3448999999999887777 99999999999999888877776632 266899999999999999999998765
Q ss_pred CCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCC
Q 019041 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD 205 (347)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~ 205 (347)
..+..+..++|+...... .....+++|+|+||+.+...+......+.++++||+||||++........+...+....+.
T Consensus 84 ~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 445577777777655433 2334467999999999988887777788899999999999986544333333333333445
Q ss_pred ccEEEEEeecchhHHH---HHHHhcCCCeEE------------------Eecc--cc-c------------------c-c
Q 019041 206 RQTLYWSATWPREVET---LARQFLRNPYKV------------------IIGS--LE-L------------------K-A 242 (347)
Q Consensus 206 ~~~i~lsaT~~~~~~~---~~~~~~~~~~~~------------------~~~~--~~-~------------------~-~ 242 (347)
.+++++||||...... ....+......+ .... .. . . .
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 6799999998644322 222221111000 0000 00 0 0 0
Q ss_pred ccc--cc----------------eeEEEecc---------------------------------------hh--------
Q 019041 243 NQS--IN----------------QVVEVVTE---------------------------------------AE-------- 257 (347)
Q Consensus 243 ~~~--~~----------------~~~~~~~~---------------------------------------~~-------- 257 (347)
... .. ........ ..
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 000 00 00000000 00
Q ss_pred --------------------ccccHHHHHHHHHHHhh---cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCC----
Q 019041 258 --------------------KYNSMFICRLIKLLKEV---MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGD---- 310 (347)
Q Consensus 258 --------------------~~~~~~~~~l~~~~~~~---~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~---- 310 (347)
.........+.+++.+. .+++++||||++.+++..+++.|...|+.+..++|.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~ 402 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKD 402 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 00011122333344332 366799999999999999999999999999999886
Q ss_pred ----CCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 311 ----KNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 311 ----~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+++.+|..++++|++|+.++||+|+++++|+|+|+++
T Consensus 403 ~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~ 443 (773)
T PRK13766 403 GDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVD 443 (773)
T ss_pred ccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCC
Confidence 8889999999999999999999999999999999875
No 71
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.4e-30 Score=227.69 Aligned_cols=280 Identities=23% Similarity=0.281 Sum_probs=209.7
Q ss_pred HHHHHHHCCCCCCcHHHHhhHhhhhcC------CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH
Q 019041 38 CLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (347)
Q Consensus 38 ~~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~ 111 (347)
+.+.+..++| +|+..|++++..|... .+-+++|..|||||++++++++..+.. |.++.+.+||.-
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAPTEI 322 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAPTEI 322 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEeccHHH
Confidence 3344466888 8999999999998763 367999999999999999999988776 778999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCCchhh---HhhcC-CCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 112 LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 112 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
||+|.++.+.++....++++..+.|........ ..+.+ ..+++|+|.- +.+....+.++.++|+||=|+
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHR-- 395 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHR-- 395 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeecceeEEEEecccc--
Confidence 999999999999999999999999988665443 22333 4899999953 334455678999999999999
Q ss_pred ccCChHHHHHHHhhcCC-CccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHH
Q 019041 188 DMGFEPQIRKIVTQIRP-DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICR 266 (347)
Q Consensus 188 ~~~~~~~~~~~~~~~~~-~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (347)
|+-.-+..+..... .+.++.|||||-+. .++-..+++-..-.+..- +..+..+.. .+-..... .. .
T Consensus 396 ---FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdEl-P~GRkpI~T---~~i~~~~~-~~---v 462 (677)
T COG1200 396 ---FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDEL-PPGRKPITT---VVIPHERR-PE---V 462 (677)
T ss_pred ---ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccC-CCCCCceEE---EEeccccH-HH---H
Confidence 66666666666555 68899999998664 445555565544333322 122222221 12121211 11 2
Q ss_pred HHHHHHhhcCCCeEEEEecCcccHH--------HHHHHHhhC--CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019041 267 LIKLLKEVMDGSRILIFTETKKGCD--------QVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 336 (347)
Q Consensus 267 l~~~~~~~~~~~~~lvf~~~~~~~~--------~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 336 (347)
+..+..+...|.++.+.|+-++..+ ..++.|+.. +.++..+||.|+.+++++++++|++|+.+|||||.+
T Consensus 463 ~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV 542 (677)
T COG1200 463 YERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV 542 (677)
T ss_pred HHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE
Confidence 2233345556889999999887655 455666643 567999999999999999999999999999999999
Q ss_pred cccCCCCCcC
Q 019041 337 AARGLGRITV 346 (347)
Q Consensus 337 ~~~Gidip~v 346 (347)
++.|||+|+-
T Consensus 543 IEVGVdVPnA 552 (677)
T COG1200 543 IEVGVDVPNA 552 (677)
T ss_pred EEecccCCCC
Confidence 9999999984
No 72
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=3.1e-31 Score=217.07 Aligned_cols=299 Identities=18% Similarity=0.265 Sum_probs=234.2
Q ss_pred ccc--CCCCHHHHHHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE
Q 019041 29 FQE--ANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (347)
Q Consensus 29 ~~~--~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li 105 (347)
|++ ++++++....|++ +..+.+||.|..+++..+.+++.++..|||.||+++|.+|++.. ...+|+
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alv 139 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALV 139 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEe
Confidence 554 6778888888886 78889999999999999999999999999999999999999876 667999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh------HhhcCCCcEEEeChHHHHHH---H--hcCCCCCCc
Q 019041 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI------RDLRRGVEIVIATPGRLIDM---L--EAQHTNLRR 174 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~iiv~T~~~l~~~---~--~~~~~~~~~ 174 (347)
+||..+|.+.+.-.++.+ |+....+....+.++.. ..-.....+++.||+.+..- + ..+.+....
T Consensus 140 i~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~ 215 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGF 215 (695)
T ss_pred echhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcce
Confidence 999999999988888875 55556666555443221 11223478999999987542 1 122334567
Q ss_pred ccEEEEecchhhhccC--ChHHHHH--HHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeE
Q 019041 175 VTYLVLDEADRMLDMG--FEPQIRK--IVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVV 250 (347)
Q Consensus 175 ~~~iIvDE~h~~~~~~--~~~~~~~--~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (347)
+.+|.+||+|...+|+ |+..+.. ++++--+...++++|||....+-+.....+.-...+.... ..+.....
T Consensus 216 ~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-----~fnr~nl~ 290 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-----GFNRPNLK 290 (695)
T ss_pred eEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-----ccCCCCce
Confidence 8999999999999887 6665554 3566567889999999988777666666555433332222 12222333
Q ss_pred EEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCE
Q 019041 251 EVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPI 330 (347)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 330 (347)
+.+..........++.+..+++....|...+|||-+.+++++++..|+++|+....+|..+.++++.-+-+.|.+|+++|
T Consensus 291 yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqv 370 (695)
T KOG0353|consen 291 YEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQV 370 (695)
T ss_pred eEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEE
Confidence 33444444455566788889988888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCcCC
Q 019041 331 MTATDVAARGLGRITVC 347 (347)
Q Consensus 331 lv~T~~~~~Gidip~v~ 347 (347)
+|+|-++++|||-|+||
T Consensus 371 ivatvafgmgidkpdvr 387 (695)
T KOG0353|consen 371 IVATVAFGMGIDKPDVR 387 (695)
T ss_pred EEEEeeecccCCCCCee
Confidence 99999999999999986
No 73
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.7e-31 Score=206.97 Aligned_cols=274 Identities=26% Similarity=0.446 Sum_probs=224.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc
Q 019041 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (347)
Q Consensus 28 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 107 (347)
-|..+-|.|++.+++.++||++|+..|.++|+...-|.+++++|..|.|||.+|.++.++++..-+ +...++++|
T Consensus 43 gfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~-----g~vsvlvmc 117 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD-----GQVSVLVMC 117 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC-----CeEEEEEEe
Confidence 377778999999999999999999999999999999999999999999999999999998876643 256799999
Q ss_pred CcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhh
Q 019041 108 PTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (347)
Q Consensus 108 p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (347)
++++|+-|+.++..+|.+.. ++++...+||.+.......+.+-++|+|+||++++.+.+.+.++++++...|+|||+.+
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 99999999999988876654 67899999999887777777788999999999999999999999999999999999987
Q ss_pred hcc-CChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHH
Q 019041 187 LDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFIC 265 (347)
Q Consensus 187 ~~~-~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (347)
+.. +.+..+.++.+.-+...|+..+|||++.++....++++.+|..+++.+..--.......++....+..+..
T Consensus 198 le~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr----- 272 (387)
T KOG0329|consen 198 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR----- 272 (387)
T ss_pred HHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhh-----
Confidence 754 47788888888888999999999999999999999999999999888765444444444444444444433
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.+.+++... .-..++||+.++.... | ..+ +|+|+.+++|+|+-.
T Consensus 273 kl~dLLd~L-eFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdier 316 (387)
T KOG0329|consen 273 KLNDLLDVL-EFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIER 316 (387)
T ss_pred hhhhhhhhh-hhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCccc
Confidence 344444332 3358899998876510 2 123 788888888888877
Q ss_pred CC
Q 019041 346 VC 347 (347)
Q Consensus 346 v~ 347 (347)
||
T Consensus 317 vN 318 (387)
T KOG0329|consen 317 VN 318 (387)
T ss_pred ce
Confidence 65
No 74
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.3e-30 Score=233.12 Aligned_cols=297 Identities=20% Similarity=0.249 Sum_probs=210.6
Q ss_pred HCCCCCCcHHHHhhHhhhhc-CCcEEEEcCCCCchhHHhHHHHHHhhhcC--CCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 44 KLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQ--PRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
-++|..++..|..+++...+ +.|.++|||||+|||.+|++.++..+.+. ......++-++++|+|+++|+.+..+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 36788999999999997654 68999999999999999999999988762 2233345779999999999999999988
Q ss_pred HHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC---CCCCCcccEEEEecchhhhccCChHHHHH
Q 019041 121 LKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ---HTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (347)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (347)
.+-....|+.+..++|+....... ...++|+|+||+++=-.-+.. ...++.+.++|+||+|.+ ....++.+..
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHHH
Confidence 877777899999999998654432 225899999999852111111 123567899999999965 4446666666
Q ss_pred HHhhc-------CCCccEEEEEeecchhHHHHHHHhcCCC-eEEEecccccccccccceeEEEecchhccccHHH--HHH
Q 019041 198 IVTQI-------RPDRQTLYWSATWPREVETLARQFLRNP-YKVIIGSLELKANQSINQVVEVVTEAEKYNSMFI--CRL 267 (347)
Q Consensus 198 ~~~~~-------~~~~~~i~lsaT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l 267 (347)
+..+. +...+++++|||++.. .+.++.+--+| ..+...+....+.+-....+.............. ...
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 65444 2456899999998654 44555444443 3333333333332222222222222111111111 122
Q ss_pred HHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC----C-------------------CCceeecCCCCHHHHHHHHHHHh
Q 019041 268 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD----G-------------------WPALSIHGDKNQSERDWVLAEFR 324 (347)
Q Consensus 268 ~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~----~-------------------~~~~~~~~~~~~~~r~~~~~~f~ 324 (347)
.+..+....+..++|||.++..+...++.|.+. | ....+.|.++...+|..+.+.|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 334445566899999999999999888888541 1 23567889999999999999999
Q ss_pred cCCCCEEEEecccccCCCCCc
Q 019041 325 SGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 325 ~g~~~vlv~T~~~~~Gidip~ 345 (347)
.|.++||+||+.++.|+++|+
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA 440 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPA 440 (1230)
T ss_pred cCCceEEEecceeeeccCCcc
Confidence 999999999999999999996
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=8.9e-29 Score=231.38 Aligned_cols=288 Identities=22% Similarity=0.271 Sum_probs=219.5
Q ss_pred HHHHH-HHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHH
Q 019041 38 CLEVI-AKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (347)
Q Consensus 38 ~~~~l-~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 116 (347)
....+ ..+|...+++-|+++|...+.|+++++.+|||.||+++|.+|++-. ++.++||.|..+|++.+
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQ 320 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHH
Confidence 34444 4589999999999999999999999999999999999999998765 66899999999999988
Q ss_pred HHHHHHhccCCCceEEEEECCCCCchh---hHhhcC---CCcEEEeChHHHHHH--HhcCCCCCCc---ccEEEEecchh
Q 019041 117 QEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR---GVEIVIATPGRLIDM--LEAQHTNLRR---VTYLVLDEADR 185 (347)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~iiv~T~~~l~~~--~~~~~~~~~~---~~~iIvDE~h~ 185 (347)
...+.. .++....++++....+. .+.+.. ..+|++.||+++... +......+.. +.++|+||||.
T Consensus 321 v~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 321 VTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 877754 47778888887766433 233333 478999999998642 1212222333 78999999999
Q ss_pred hhccC--ChHHHHHHHhhc--CCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhcccc
Q 019041 186 MLDMG--FEPQIRKIVTQI--RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNS 261 (347)
Q Consensus 186 ~~~~~--~~~~~~~~~~~~--~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (347)
..+|+ |++.+..+.... .+...++++|||....+...+-.-++.......... ..+.+....+.......
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--fnR~NL~yeV~~k~~~~---- 470 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS--FNRPNLKYEVSPKTDKD---- 470 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc--CCCCCceEEEEeccCcc----
Confidence 99987 788877763322 245789999999988776666555444333222211 12223222222222111
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCC
Q 019041 262 MFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGL 341 (347)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 341 (347)
....+........++..+||||.++..++.++..|.+.|+....||++++..+|..+.+.|..++.+|++||=++++||
T Consensus 471 -~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGI 549 (941)
T KOG0351|consen 471 -ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGI 549 (941)
T ss_pred -chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCC
Confidence 2225556667777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCC
Q 019041 342 GRITVC 347 (347)
Q Consensus 342 dip~v~ 347 (347)
|-||||
T Consensus 550 dK~DVR 555 (941)
T KOG0351|consen 550 DKPDVR 555 (941)
T ss_pred CCCcee
Confidence 999996
No 76
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.8e-28 Score=226.34 Aligned_cols=285 Identities=21% Similarity=0.230 Sum_probs=220.5
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHhhHhhhhc----C--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEE
Q 019041 32 ANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALK----G--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (347)
Q Consensus 32 ~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~----~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (347)
+..+......+.+ ++| +-++-|..+|+.+.+ + .+-++||..|.|||.+++-++...+.. ++++.
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVA 647 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVA 647 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEE
Confidence 3456666666665 777 789999999998765 2 478999999999999999888877765 78999
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEEEE
Q 019041 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (347)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (347)
|+|||.-|++|.++.|++-....++++..+..-.+..+.. ..+. ...||+|||. .+.++...+++++++||
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlII 722 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLII 722 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEE
Confidence 9999999999999999987778899998887776655442 2333 3589999995 34445667889999999
Q ss_pred ecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccc
Q 019041 181 DEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (347)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (347)
||=|+ |+-.-++.++.++....++-|||||-+..-.+.-..+.+...+... +.+..-....+.+.+..
T Consensus 723 DEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP------P~~R~pV~T~V~~~d~~- 790 (1139)
T COG1197 723 DEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP------PEDRLPVKTFVSEYDDL- 790 (1139)
T ss_pred echhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCC------CCCCcceEEEEecCChH-
Confidence 99999 7877888888888999999999998776544444443333222221 11111122222222221
Q ss_pred cHHHHHHH-HHHHhhcCCCeEEEEecCcccHHHHHHHHhhC--CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019041 261 SMFICRLI-KLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 337 (347)
Q Consensus 261 ~~~~~~l~-~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 337 (347)
.+. .++.+...||++....|.++..+.+++.|++. ..++.+.||.|+..+-.+++..|.+|+.+|||||.++
T Consensus 791 -----~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTII 865 (1139)
T COG1197 791 -----LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTII 865 (1139)
T ss_pred -----HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeee
Confidence 122 34556777999999999999999999999875 5678999999999999999999999999999999999
Q ss_pred ccCCCCCcCC
Q 019041 338 ARGLGRITVC 347 (347)
Q Consensus 338 ~~Gidip~v~ 347 (347)
+.|||||+.|
T Consensus 866 EtGIDIPnAN 875 (1139)
T COG1197 866 ETGIDIPNAN 875 (1139)
T ss_pred ecCcCCCCCc
Confidence 9999999987
No 77
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=6.2e-29 Score=206.16 Aligned_cols=289 Identities=21% Similarity=0.281 Sum_probs=204.8
Q ss_pred HHHHHHHH-CCCCCC-cHHHHhhHhhhhcC-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHH
Q 019041 37 YCLEVIAK-LGFVEP-TPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (347)
Q Consensus 37 ~~~~~l~~-~~~~~~-~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 113 (347)
.+.+.|++ +|+..+ ++.|..++..+.++ +++.|++|||+||+++|.+|++-. +..++|+.|..+|+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 45667776 787654 78999999987765 699999999999999999998876 56899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhh---cCCCcEEEeChHHHHHHHh----cCCCCCCcccEEEEecc
Q 019041 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDL---RRGVEIVIATPGRLIDMLE----AQHTNLRRVTYLVLDEA 183 (347)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~iiv~T~~~l~~~~~----~~~~~~~~~~~iIvDE~ 183 (347)
..+.+.+.++ .+++..+....+..+.. .++ .....+++.||+....... +...+-..+.+++|||+
T Consensus 75 kDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 75 KDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 9999988875 44554454444332221 122 3357899999997543222 11222345789999999
Q ss_pred hhhhccC--ChHHHHHH--HhhcCCCccEEEEEeecchhHHHHHHH--hcCCCeEEEecccccccccccceeEEEecchh
Q 019041 184 DRMLDMG--FEPQIRKI--VTQIRPDRQTLYWSATWPREVETLARQ--FLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (347)
Q Consensus 184 h~~~~~~--~~~~~~~~--~~~~~~~~~~i~lsaT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (347)
|...+|+ |++.+..+ ++..-+....+++|||.++.++..+.. -+.+|..++-.... ....++......
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F------R~NLFYD~~~K~ 224 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF------RDNLFYDNHMKS 224 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch------hhhhhHHHHHHH
Confidence 9999987 77766655 222336778999999999887765543 34455443332211 111111111111
Q ss_pred ccccHHHHHHHHHHHhhc------------CCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhc
Q 019041 258 KYNSMFICRLIKLLKEVM------------DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 325 (347)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~------------~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 325 (347)
.... -...|.+...... -.+..||||.+++.+++++-.|...|++...+|.++...+|..+.+.|-+
T Consensus 225 ~I~D-~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~ 303 (641)
T KOG0352|consen 225 FITD-CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN 303 (641)
T ss_pred Hhhh-HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc
Confidence 1111 1112222222111 12468999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccCCCCCcCC
Q 019041 326 GRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 326 g~~~vlv~T~~~~~Gidip~v~ 347 (347)
++.+||++|..+++|+|-|+||
T Consensus 304 ~~~PvI~AT~SFGMGVDKp~VR 325 (641)
T KOG0352|consen 304 NEIPVIAATVSFGMGVDKPDVR 325 (641)
T ss_pred CCCCEEEEEeccccccCCccee
Confidence 9999999999999999999986
No 78
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.96 E-value=1.2e-27 Score=218.67 Aligned_cols=278 Identities=19% Similarity=0.184 Sum_probs=181.3
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.++|+|.+++..+.-.+..+++++||+|||+++++|++..... +..++|++|+++|+.|+.+++..+....|
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 3466666666655555557999999999999999997766554 45699999999999999999999988899
Q ss_pred ceEEEEECCCC---CchhhHhhcCCCcEEEeChHHH-HHHHhcC------CCCCCcccEEEEecchhhhccC--------
Q 019041 129 IRSTCIYGGAP---KGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRMLDMG-------- 190 (347)
Q Consensus 129 ~~~~~~~~~~~---~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~~~~-------- 190 (347)
+.+..+.++.. .....+....+++|+++||+.| .+++... ...+..+.++|+||||.++-..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 98888776522 2222333445799999999999 4544321 2335678999999999764211
Q ss_pred --------ChHHHHHHHhhcCC--------C-------------------------------------------------
Q 019041 191 --------FEPQIRKIVTQIRP--------D------------------------------------------------- 205 (347)
Q Consensus 191 --------~~~~~~~~~~~~~~--------~------------------------------------------------- 205 (347)
.......+...+.. .
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 01111111111111 0
Q ss_pred ------------------------------------------------------------ccEEEEEeecchhHHHHHHH
Q 019041 206 ------------------------------------------------------------RQTLYWSATWPREVETLARQ 225 (347)
Q Consensus 206 ------------------------------------------------------------~~~i~lsaT~~~~~~~~~~~ 225 (347)
.++.+||+|.......+.+.
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 23445555543333333332
Q ss_pred hcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHh-hcCCCeEEEEecCcccHHHHHHHHhhCCCCc
Q 019041 226 FLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWPA 304 (347)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~ 304 (347)
|.- ..+.+....+.........+ ......+. ..+.+.+.+ +..+.++||||++++.++.+++.|.+.|+++
T Consensus 380 Y~l--~v~~IPt~kp~~r~d~~d~i-~~~~~~K~-----~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~ 451 (762)
T TIGR03714 380 YSL--SVVKIPTNKPIIRIDYPDKI-YATLPEKL-----MATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPH 451 (762)
T ss_pred hCC--CEEEcCCCCCeeeeeCCCeE-EECHHHHH-----HHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence 211 11111111111111111111 12222222 245554443 3467799999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 305 LSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 305 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
..+|+++++.++..+.+.++.| .|+|||+++++|+|+|
T Consensus 452 ~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~ 489 (762)
T TIGR03714 452 NLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIK 489 (762)
T ss_pred EEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCC
Confidence 9999999988887777766666 7999999999999999
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=3.3e-27 Score=219.65 Aligned_cols=278 Identities=20% Similarity=0.216 Sum_probs=185.6
Q ss_pred CCcHHHHhhHhhhhcC---CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 49 EPTPIQAQGWPMALKG---RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~---~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
.|++.|+++++.+.++ +++++.++||+|||.+|+.++...+.. +.++||++|+++|+.|+.+.+++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~-- 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRAR-- 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH--
Confidence 6899999999999874 789999999999999998777666544 668999999999999999999874
Q ss_pred CCCceEEEEECCCCCchhh---Hhh-cCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC------hHHH
Q 019041 126 RAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF------EPQI 195 (347)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~------~~~~ 195 (347)
.+..+..++++.+..+.. ... ....+|+|+|+..+. ..+.++++||+||+|....+.. ...+
T Consensus 214 -fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 214 -FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred -hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 356788888887665443 222 335799999987764 3467899999999997654321 1222
Q ss_pred HHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhc-cccHHHHHHHHHHH-h
Q 019041 196 RKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEK-YNSMFICRLIKLLK-E 273 (347)
Q Consensus 196 ~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~ 273 (347)
.. ......+.+++++|||++......+.. +....+................+........ ....+...+++.+. .
T Consensus 286 a~-~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 286 AV-VRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred HH-HHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 22 223346789999999987554333321 1211111111100000011111111110000 00112223444443 3
Q ss_pred hcCCCeEEEEecCcc------------------------------------------------------------cHHHH
Q 019041 274 VMDGSRILIFTETKK------------------------------------------------------------GCDQV 293 (347)
Q Consensus 274 ~~~~~~~lvf~~~~~------------------------------------------------------------~~~~~ 293 (347)
...++++|||++.+. .++++
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 334668999877532 35677
Q ss_pred HHHHhhC--CCCceeecCCCC--HHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 294 TRQLRMD--GWPALSIHGDKN--QSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 294 ~~~L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
++.|++. +.++..+|+++. +.+++.++++|++|+.+|||+|++++.|+|+|+|.
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~ 500 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVT 500 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcC
Confidence 7888775 778999999886 46788999999999999999999999999999974
No 80
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.2e-27 Score=211.48 Aligned_cols=278 Identities=22% Similarity=0.242 Sum_probs=195.1
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..|+ .|++.|..++..++.|+ +..+.||+|||+++.+|++..... ++.++|++|+++|+.|..+++..+
T Consensus 99 ~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred HhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHH
Confidence 3566 89999999999999998 999999999999999999887554 678999999999999999999999
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcCCC-------------------------CCCcccE
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQHT-------------------------NLRRVTY 177 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~~-------------------------~~~~~~~ 177 (347)
....++.+..+.|+.+. ..+....+++|+++|...| .++++.... ....+.+
T Consensus 168 ~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 168 YEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred HhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 89999999999998653 3444455789999998876 344432211 1245789
Q ss_pred EEEecchhhhccC-------------C--hHH---HHHHHhhcCC-----------------------------------
Q 019041 178 LVLDEADRMLDMG-------------F--EPQ---IRKIVTQIRP----------------------------------- 204 (347)
Q Consensus 178 iIvDE~h~~~~~~-------------~--~~~---~~~~~~~~~~----------------------------------- 204 (347)
.||||++.++-.. . ... ...+...+..
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 9999999542100 0 000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 019041 205 -------------------------------------------------------------------------------- 204 (347)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (347)
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence
Q ss_pred --CccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhh-cCCCeEE
Q 019041 205 --DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEV-MDGSRIL 281 (347)
Q Consensus 205 --~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~l 281 (347)
-.++.+||||.......+.+.|..++..+-..... ...... .+.......+.. .+.+.+... ..+.++|
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~-~~v~~t~~~K~~-----aL~~~i~~~~~~~~pvL 477 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLP-DEVFLTAAAKWA-----AVAARVRELHAQGRPVL 477 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecC-CEEEeCHHHHHH-----HHHHHHHHHHhcCCCEE
Confidence 03567888887776666666666655443333222 111111 222233333332 455555543 2356899
Q ss_pred EEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 282 IFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 282 vf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
|||++++.++.+++.|.+.|+++..+||+.+.. ...+..|..+...|+|||+++++|+|||
T Consensus 478 Ift~t~~~se~L~~~L~~~gi~~~~Lhg~~~~r--E~~ii~~ag~~g~VlVATdmAgRGtDI~ 538 (656)
T PRK12898 478 VGTRSVAASERLSALLREAGLPHQVLNAKQDAE--EAAIVARAGQRGRITVATNMAGRGTDIK 538 (656)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHH--HHHHHHHcCCCCcEEEEccchhcccCcC
Confidence 999999999999999999999999999986644 4445556666668999999999999999
No 81
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.96 E-value=9.6e-27 Score=211.43 Aligned_cols=278 Identities=21% Similarity=0.275 Sum_probs=189.5
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|+ .|++.|......+.+|+ +..++||+|||+++.++++..... +..+.|++|+..||.|..+++.++.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 565 78888888887777775 999999999999999998544433 4469999999999999999999999
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcC------CCCCCcccEEEEecchhhhccC-------
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRMLDMG------- 190 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~~~~------- 190 (347)
..+|+.+..+.++.+.......+ .++|+++|+..| +++++.+ ...+..+.++|+||+|.+.-..
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 99999999999987765443333 479999999999 7777655 2356789999999999754210
Q ss_pred ---------ChHHHHHHHhhcCC--------C------------------------------------------------
Q 019041 191 ---------FEPQIRKIVTQIRP--------D------------------------------------------------ 205 (347)
Q Consensus 191 ---------~~~~~~~~~~~~~~--------~------------------------------------------------ 205 (347)
.......+.+.+.. .
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 00001111111100 0
Q ss_pred -------------------------------------------------------------ccEEEEEeecchhHHHHHH
Q 019041 206 -------------------------------------------------------------RQTLYWSATWPREVETLAR 224 (347)
Q Consensus 206 -------------------------------------------------------------~~~i~lsaT~~~~~~~~~~ 224 (347)
.++.+||+|.......+..
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 359 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEK 359 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHH
Confidence 1334444444333333322
Q ss_pred HhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHH-HHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCC
Q 019041 225 QFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIK-LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWP 303 (347)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~ 303 (347)
.|.-+ .+.+....+.........+ ......+.. .+.+ ....+..+.++||||++++.++.+++.|.+.|++
T Consensus 360 iY~l~--vv~IPtnkp~~R~d~~d~i-~~t~~~k~~-----ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~ 431 (745)
T TIGR00963 360 IYNLE--VVVVPTNRPVIRKDLSDLV-YKTEEEKWK-----AVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIP 431 (745)
T ss_pred HhCCC--EEEeCCCCCeeeeeCCCeE-EcCHHHHHH-----HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 22211 1111111111111111111 111222221 3333 3334456789999999999999999999999999
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 304 ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 304 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
...+|++ +.+|...+..|..+...|+|||+++++|+|++.
T Consensus 432 ~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l 471 (745)
T TIGR00963 432 HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL 471 (745)
T ss_pred eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCc
Confidence 9999998 678888899999999999999999999999986
No 82
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=1.1e-26 Score=224.03 Aligned_cols=282 Identities=17% Similarity=0.222 Sum_probs=171.4
Q ss_pred CCcHHHHhhHhhhhc-----CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 49 EPTPIQAQGWPMALK-----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~-----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.+|+||.+++..+.+ .+++++++|||||||.+++..+. ++.... ...++|+|+|+.+|+.|+.+.+..+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~-~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMY-RLLKAK-----RFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-HHHhcC-----ccCeEEEEecHHHHHHHHHHHHHhc
Confidence 589999999987653 36799999999999988655443 333322 1568999999999999999999987
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC-----CCCCCcccEEEEecchhhhcc---------
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-----HTNLRRVTYLVLDEADRMLDM--------- 189 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~~~~~~~iIvDE~h~~~~~--------- 189 (347)
....+..+..+++...... ........|+|+|++++...+... ...+..+++||+||||+....
T Consensus 487 ~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 4322211111111100000 011234789999999997764321 134678999999999986320
Q ss_pred ------CChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccc--------cce-------
Q 019041 190 ------GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQS--------INQ------- 248 (347)
Q Consensus 190 ------~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------- 248 (347)
.+...++.++.++ +...|+|||||.+... .+++.|...+.-......... +..
T Consensus 565 ~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi 638 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGI 638 (1123)
T ss_pred ccchhhhHHHHHHHHHhhc--CccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccc
Confidence 0235667777765 3578999999975322 222332211110000000000 000
Q ss_pred ----------------eE--EEecchh-----ccc-----c----HHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHH
Q 019041 249 ----------------VV--EVVTEAE-----KYN-----S----MFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQ 296 (347)
Q Consensus 249 ----------------~~--~~~~~~~-----~~~-----~----~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~ 296 (347)
.+ ......- ..+ . .++..+.+.+.. ...+|+||||.+++||+.+.+.
T Consensus 639 ~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~-~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 639 HFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDP-TGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred cccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhc-cCCCcEEEEEcCHHHHHHHHHH
Confidence 00 0000000 000 0 011122222221 1237999999999999999988
Q ss_pred HhhC------CC---CceeecCCCCHHHHHHHHHHHhcCCC-CEEEEecccccCCCCCcCC
Q 019041 297 LRMD------GW---PALSIHGDKNQSERDWVLAEFRSGRS-PIMTATDVAARGLGRITVC 347 (347)
Q Consensus 297 L~~~------~~---~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gidip~v~ 347 (347)
|.+. +. .+..++|+++ ++..++++|+++.. +|+|+++++++|+|+|+|.
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~ 776 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSIC 776 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccccc
Confidence 7652 22 3456888876 56789999999887 5899999999999999874
No 83
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=4.3e-27 Score=184.45 Aligned_cols=164 Identities=33% Similarity=0.538 Sum_probs=138.7
Q ss_pred cHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCce
Q 019041 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (347)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 130 (347)
+|+|.++++.+.+++++++.+|||+|||++++.+++..+.+.. ..++++++|+++|+.|..+.+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~------~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK------DARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS------SSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC------CceEEEEeecccccccccccccccccccccc
Confidence 5899999999999999999999999999999999998887742 4489999999999999999999998887888
Q ss_pred EEEEECCCCCc-hhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCC--Ccc
Q 019041 131 STCIYGGAPKG-PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP--DRQ 207 (347)
Q Consensus 131 ~~~~~~~~~~~-~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~--~~~ 207 (347)
+..++++.... .....+..+++|+|+||+++...+......+.+++++|+||+|.+....+...+..+++.+.. ..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99998887744 222333457999999999999999876667777999999999999888778888888777733 588
Q ss_pred EEEEEeecchhHH
Q 019041 208 TLYWSATWPREVE 220 (347)
Q Consensus 208 ~i~lsaT~~~~~~ 220 (347)
++++|||++..++
T Consensus 155 ~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 155 IILLSATLPSNVE 167 (169)
T ss_dssp EEEEESSSTHHHH
T ss_pred EEEEeeCCChhHh
Confidence 9999999985544
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=3.8e-26 Score=214.41 Aligned_cols=290 Identities=17% Similarity=0.175 Sum_probs=178.0
Q ss_pred CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 019041 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (347)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 126 (347)
...|+|+|+.+.........+++.+|||+|||.+++..+...+... ...+++|..|+.+++.++.+.+.++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~------~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG------LADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------CCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 3489999998865444467799999999999998777655443321 2468999999999999999988764321
Q ss_pred C--CceEEEEECCCCCchhh--------------------Hhhc----C---CCcEEEeChHHHHHHHhcC-CCCCCc--
Q 019041 127 A--GIRSTCIYGGAPKGPQI--------------------RDLR----R---GVEIVIATPGRLIDMLEAQ-HTNLRR-- 174 (347)
Q Consensus 127 ~--~~~~~~~~~~~~~~~~~--------------------~~~~----~---~~~iiv~T~~~l~~~~~~~-~~~~~~-- 174 (347)
. +..+...+|........ ..+. + -.+|+|||.++++...... ...+..
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 1 33566666654311100 0111 1 2689999999987544322 122222
Q ss_pred --ccEEEEecchhhhccCChHHHHHHHhhc-CCCccEEEEEeecchhHHHH-HHHhcCC-C------eEEEe--cccc--
Q 019041 175 --VTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETL-ARQFLRN-P------YKVII--GSLE-- 239 (347)
Q Consensus 175 --~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lsaT~~~~~~~~-~~~~~~~-~------~~~~~--~~~~-- 239 (347)
-++||+||+|.... .....+..+++.+ ....++|+||||++...... .+.+... + +.... ....
T Consensus 438 La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 35899999997633 2333444444443 24568999999998876543 3333211 0 00000 0000
Q ss_pred ---cccc---cccceeEEEecch-hccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCC---CCceeecC
Q 019041 240 ---LKAN---QSINQVVEVVTEA-EKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG---WPALSIHG 309 (347)
Q Consensus 240 ---~~~~---~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~---~~~~~~~~ 309 (347)
.... ......+...... ..... ....+..++.....+++++||||+++.|+.+++.|++.+ .++..+|+
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~-~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHs 595 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLP-DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHA 595 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccC-HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeC
Confidence 0000 0001111110000 00000 011222333344567899999999999999999998764 57899999
Q ss_pred CCCHHHH----HHHHHHH-hcCC---CCEEEEecccccCCCCC
Q 019041 310 DKNQSER----DWVLAEF-RSGR---SPIMTATDVAARGLGRI 344 (347)
Q Consensus 310 ~~~~~~r----~~~~~~f-~~g~---~~vlv~T~~~~~Gidip 344 (347)
.++..+| +++++.| ++|+ ..|||+|++++.|+|++
T Consensus 596 rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId 638 (878)
T PRK09694 596 RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD 638 (878)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC
Confidence 9999999 4567888 5565 36999999999999994
No 85
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3e-26 Score=211.39 Aligned_cols=281 Identities=22% Similarity=0.227 Sum_probs=189.1
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..|+ .|++.|..+...+.+|+ +..+.||+|||+++++|++..... +..++|++|++.||.|..+++..+
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3566 88999998888887776 999999999999999998866554 667999999999999999999999
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcCC------CCCCcccEEEEecchhhhccC------
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRMLDMG------ 190 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~~~~------ 190 (347)
....|+.+..+.|+.+.....+ ....++|+++|+..+ .+++.... .....+.++|+||+|.++-..
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 9999999999999887333322 234689999999888 44443321 235678999999999754110
Q ss_pred ----------ChHHHHHHHhhcCC--------C-----------------------------------------------
Q 019041 191 ----------FEPQIRKIVTQIRP--------D----------------------------------------------- 205 (347)
Q Consensus 191 ----------~~~~~~~~~~~~~~--------~----------------------------------------------- 205 (347)
....+..+...+.. .
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~ 301 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKR 301 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhc
Confidence 11111112211111 0
Q ss_pred --------------------------------------------------------------ccEEEEEeecchhHHHHH
Q 019041 206 --------------------------------------------------------------RQTLYWSATWPREVETLA 223 (347)
Q Consensus 206 --------------------------------------------------------------~~~i~lsaT~~~~~~~~~ 223 (347)
.++.+||+|.......+.
T Consensus 302 d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~ 381 (790)
T PRK09200 302 DVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFF 381 (790)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHH
Confidence 133444444433322232
Q ss_pred HHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHh-hcCCCeEEEEecCcccHHHHHHHHhhCCC
Q 019041 224 RQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGW 302 (347)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~lvf~~~~~~~~~~~~~L~~~~~ 302 (347)
+.|.- ..+.+....+.........+. .....+ ...+.+.+.. +..+.++||||++++.++.++..|.+.|+
T Consensus 382 ~~Y~l--~v~~IPt~kp~~r~d~~~~i~-~~~~~K-----~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi 453 (790)
T PRK09200 382 EVYNM--EVVQIPTNRPIIRIDYPDKVF-VTLDEK-----YKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGI 453 (790)
T ss_pred HHhCC--cEEECCCCCCcccccCCCeEE-cCHHHH-----HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 22211 111111111111111111111 122222 2245555543 34577999999999999999999999999
Q ss_pred CceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCC---CcC
Q 019041 303 PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGR---ITV 346 (347)
Q Consensus 303 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi---p~v 346 (347)
++..+|+++++.++..+...+..| +|+|||+++++|+|+ |+|
T Consensus 454 ~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V 498 (790)
T PRK09200 454 PHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGV 498 (790)
T ss_pred CEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCccccc
Confidence 999999999988887777776666 799999999999999 565
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=5.3e-26 Score=204.43 Aligned_cols=257 Identities=19% Similarity=0.232 Sum_probs=167.6
Q ss_pred EEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh---h
Q 019041 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---I 144 (347)
Q Consensus 68 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 144 (347)
++.||||+|||.+++..+...+.. +.++||++|+.+|+.|+.+.+++. .+..+..++++.+..+. +
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHH
Confidence 478999999999887665544433 668999999999999999999864 35567788888765543 2
Q ss_pred Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-----C-hHHHHHHHhhcCCCccEEEEEeecch
Q 019041 145 RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----F-EPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 145 ~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~-~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
.... ...+|+|+|+..+. ..+.++++||+||.|....++ + ...+....... .+.+++++||||+.
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil~SATPsl 141 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVLGSATPSL 141 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEEEeCCCCH
Confidence 2222 35789999988764 246789999999999876433 1 12233333333 57889999999875
Q ss_pred hHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHH-hhcCCCeEEEEecCccc-------
Q 019041 218 EVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLK-EVMDGSRILIFTETKKG------- 289 (347)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~lvf~~~~~~------- 289 (347)
+....+. -+.......... ..........+........ ...+...+++.+. ....++++|||+|++..
T Consensus 142 es~~~~~--~g~~~~~~l~~r-~~~~~~p~v~vid~~~~~~-~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 142 ESYHNAK--QKAYRLLVLTRR-VSGRKPPEVKLIDMRKEPR-QSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred HHHHHHh--cCCeEEeechhh-hcCCCCCeEEEEecccccc-cCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 4333222 111111111110 0000011111111111110 0112223444443 33456789999777654
Q ss_pred -----------------------------------------------------HHHHHHHHhhC--CCCceeecCCCCHH
Q 019041 290 -----------------------------------------------------CDQVTRQLRMD--GWPALSIHGDKNQS 314 (347)
Q Consensus 290 -----------------------------------------------------~~~~~~~L~~~--~~~~~~~~~~~~~~ 314 (347)
.+++++.|++. +.++..+|++++..
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 47788888776 67899999998766
Q ss_pred HH--HHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 315 ER--DWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 315 ~r--~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+ ..+++.|++|+.+|||+|++++.|+|+|+|.
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~ 332 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVT 332 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCccc
Confidence 55 8899999999999999999999999999873
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=6.6e-26 Score=183.35 Aligned_cols=271 Identities=18% Similarity=0.218 Sum_probs=186.0
Q ss_pred CCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.+++.|+.+-+.+. +.++.+++|-||+|||.. ++..++...+. |.++.+.+|+...+.+++..+++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~a- 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQA- 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHh-
Confidence 68999998866544 468999999999999985 44444444442 778999999999999999988874
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCC
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (347)
..+..+..++|++...-. ..++|+|.++++++-. .+|++|+||++.+.-..-.....++-+....
T Consensus 168 -F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 168 -FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred -hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 345678889988765433 6899999999999754 4899999999987544333333334444445
Q ss_pred CccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccc-cHHHHHHHHHHHhh-cCCCeEEE
Q 019041 205 DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN-SMFICRLIKLLKEV-MDGSRILI 282 (347)
Q Consensus 205 ~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~lv 282 (347)
....|++|||++..++..+... +...+.+....-..+-.+...+-...-..+.. ..+--.+...+++. ..+.+++|
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred cCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 6679999999988766554432 22222222111111111122222222222211 11111344444433 34679999
Q ss_pred EecCcccHHHHHHHHhhC-CC-CceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 283 FTETKKGCDQVTRQLRMD-GW-PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 283 f~~~~~~~~~~~~~L~~~-~~-~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
|+++++.+++++..|++. +. .+..+|+... .|.+..+.|++|+.++||+|.++++|+.+|+|.
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vd 375 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKITLLITTTILERGVTFPNVD 375 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCceEEEEEeehhhcccccccce
Confidence 999999999999999543 43 4467787644 788889999999999999999999999999873
No 88
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.3e-25 Score=206.90 Aligned_cols=280 Identities=19% Similarity=0.268 Sum_probs=185.6
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|. .+++.|.-.--.+.+|+ +..++||+|||+++.+|++..... +..++|++|++.||.|..+++..+.
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 454 66777766655555564 889999999999999999877654 4469999999999999999999999
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcC-CCCC-----CcccEEEEecchhhhccC-------
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ-HTNL-----RRVTYLVLDEADRMLDMG------- 190 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~-~~~~-----~~~~~iIvDE~h~~~~~~------- 190 (347)
...|+.+..+.++.+.......+ .++|+++|+..| +++++.. ...+ ..+.++|+||+|.++-..
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLII 225 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLII 225 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceee
Confidence 99999999999987765554444 589999999999 8887765 2333 478999999999764211
Q ss_pred ---------ChHHHHHHHhhcCC--------------CccEEEEEeecchhHHHHH------------------------
Q 019041 191 ---------FEPQIRKIVTQIRP--------------DRQTLYWSATWPREVETLA------------------------ 223 (347)
Q Consensus 191 ---------~~~~~~~~~~~~~~--------------~~~~i~lsaT~~~~~~~~~------------------------ 223 (347)
....+..+...+.. ..+.+.+|-.-....+.+.
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i 305 (896)
T PRK13104 226 SGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHV 305 (896)
T ss_pred eCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHH
Confidence 11111122222211 1233344433111111111
Q ss_pred ------HHhcCCCeEEEeccc-----------------------------------------------------------
Q 019041 224 ------RQFLRNPYKVIIGSL----------------------------------------------------------- 238 (347)
Q Consensus 224 ------~~~~~~~~~~~~~~~----------------------------------------------------------- 238 (347)
..++.....+.+.+.
T Consensus 306 ~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGM 385 (896)
T PRK13104 306 NAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGM 385 (896)
T ss_pred HHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccC
Confidence 001111111111100
Q ss_pred --------------------ccccc-----cccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHH
Q 019041 239 --------------------ELKAN-----QSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQV 293 (347)
Q Consensus 239 --------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~ 293 (347)
..+.. ......+ ......+.. ..+.+....+..+.++||||++++.++.+
T Consensus 386 TGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v-~~t~~~k~~----av~~~i~~~~~~g~PVLVgt~Sie~sE~l 460 (896)
T PRK13104 386 TGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLV-YLTQADKFQ----AIIEDVRECGVRKQPVLVGTVSIEASEFL 460 (896)
T ss_pred CCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeE-EcCHHHHHH----HHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 00000 0001111 111112222 22333334455788999999999999999
Q ss_pred HHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 294 TRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 294 ~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
++.|++.|++..++|++.++.++..+.+.|+.| .|+|||+++++|+|+.
T Consensus 461 s~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~ 509 (896)
T PRK13104 461 SQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIV 509 (896)
T ss_pred HHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCccee
Confidence 999999999999999999999999999999999 5999999999999984
No 89
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1e-25 Score=208.33 Aligned_cols=307 Identities=18% Similarity=0.221 Sum_probs=217.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCC---CCEEEEEc
Q 019041 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE---GPIVLVLA 107 (347)
Q Consensus 32 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~---~~~~lil~ 107 (347)
..++++-..++. |...+.+.|..+.+..+.+ .++++|||||+|||.++++-+++.+..+.+...+- ..++++++
T Consensus 294 selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 294 SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 356666666665 5667999999999987776 69999999999999999999999998875522221 34899999
Q ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCC--CCCCcccEEEEecchh
Q 019041 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH--TNLRRVTYLVLDEADR 185 (347)
Q Consensus 108 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~iIvDE~h~ 185 (347)
|..+|+..|...+.+.....|+.+...+|+......-. .+..|+|+||+..=-.-+... ...+-++++|+||.|.
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhh
Confidence 99999999999999988999999999999876433311 247899999998522212111 1234578999999996
Q ss_pred hhccCChHHHHHHHhhc-------CCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchh-
Q 019041 186 MLDMGFEPQIRKIVTQI-------RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE- 257 (347)
Q Consensus 186 ~~~~~~~~~~~~~~~~~-------~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 257 (347)
+-+ ..++.+..+..+. ...++++++|||++...+ ...-+..++..++..+....+.+-..+++.......
T Consensus 449 LhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 449 LHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPL 526 (1674)
T ss_pred ccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcccCcCCccceEeccccCCch
Confidence 533 3455554443222 246799999999977533 222222334444444444444444444443332221
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh-------------------------------------C
Q 019041 258 KYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM-------------------------------------D 300 (347)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~-------------------------------------~ 300 (347)
+..+..-....+.+-++...+++|||+.+++.+.+.|+.++. .
T Consensus 527 ~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 112222334445555555667999999999988888777762 1
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 301 GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 301 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.+.+++.|.++++.+|....+.|+.|.++|+|+|..++.|+++|.
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpa 651 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPA 651 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCc
Confidence 356789999999999999999999999999999999999999995
No 90
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.94 E-value=2e-24 Score=207.15 Aligned_cols=268 Identities=21% Similarity=0.261 Sum_probs=171.6
Q ss_pred cHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHH-HHHhhhcCCCccCCCCCEEEEEcCc----HHHHHHHHHHHHH-hc
Q 019041 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLP-AFVHVSAQPRLVQGEGPIVLVLAPT----RELAVQIQEEALK-FG 124 (347)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~-~~~~~~~~~~~~~~~~~~~lil~p~----~~l~~q~~~~~~~-~~ 124 (347)
+.+-.+++..+..++.++++|+||||||. .+| ++...... ....+++.-|+ ++++.++.+++.. ++
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g------~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRG------VKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCC------CCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 44555677777778889999999999997 344 33222111 01234444474 5777777777663 33
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecch-hhhccCChH-HHHHHHhhc
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD-RMLDMGFEP-QIRKIVTQI 202 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h-~~~~~~~~~-~~~~~~~~~ 202 (347)
...|..+ ... . ....++.|+++|++.|++.+..... ++++++||+|||| +.++.+|.. .+..++..
T Consensus 148 ~~VGY~v----rf~---~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~- 215 (1294)
T PRK11131 148 GCVGYKV----RFN---D---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR- 215 (1294)
T ss_pred ceeceee----cCc---c---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-
Confidence 3333221 111 1 1123579999999999998876544 8899999999999 466666653 23343332
Q ss_pred CCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhc-cccHHHHHHHHHHHh--hcCCCe
Q 019041 203 RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEK-YNSMFICRLIKLLKE--VMDGSR 279 (347)
Q Consensus 203 ~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~--~~~~~~ 279 (347)
+++.|++++|||+.. ..+.+.+.+.| .+.+.... ..+...+........ ........+...+.. ....+.
T Consensus 216 rpdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 216 RPDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred CCCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 356799999999964 34555444444 33332211 112222222211110 011122233333222 234578
Q ss_pred EEEEecCcccHHHHHHHHhhCCCC---ceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 280 ILIFTETKKGCDQVTRQLRMDGWP---ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 280 ~lvf~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+|||+++.++++.+++.|++.+.+ +..+||+++.++|..+++. .|..+|||||+++++|||+|+|+
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~ 357 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIK 357 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcce
Confidence 999999999999999999987764 5679999999999999876 47789999999999999999984
No 91
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=4.8e-25 Score=183.66 Aligned_cols=245 Identities=29% Similarity=0.458 Sum_probs=178.5
Q ss_pred CCEEEEEcCcHHHHHHHHHH---HHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCccc
Q 019041 100 GPIVLVLAPTRELAVQIQEE---ALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVT 176 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 176 (347)
.+..+|+-|+++|++|.... |+.......++...+.+|.....+...+..+.+|+|+||.++.+.+......+.++.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 56789999999999999984 555555566777788888888888888888999999999999999999999999999
Q ss_pred EEEEecchhhhccCChHHHHHHHhhcC------CCccEEEEEeecchh-HHHHHHHhcCCCeEEEeccccccccccccee
Q 019041 177 YLVLDEADRMLDMGFEPQIRKIVTQIR------PDRQTLYWSATWPRE-VETLARQFLRNPYKVIIGSLELKANQSINQV 249 (347)
Q Consensus 177 ~iIvDE~h~~~~~~~~~~~~~~~~~~~------~~~~~i~lsaT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (347)
++++||++.++..++.+.+.++...++ ...|.+..|||+... +....++.+.-|.-+.....+.. +...++.
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~v-petvHhv 444 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLV-PETVHHV 444 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccccc-chhhccc
Confidence 999999999999889888888876664 245889999997542 33344455555544444332211 1111111
Q ss_pred EEEecch----------------------------hccccHHHHHH------HHHHHhhcCCCeEEEEecCcccHHHHHH
Q 019041 250 VEVVTEA----------------------------EKYNSMFICRL------IKLLKEVMDGSRILIFTETKKGCDQVTR 295 (347)
Q Consensus 250 ~~~~~~~----------------------------~~~~~~~~~~l------~~~~~~~~~~~~~lvf~~~~~~~~~~~~ 295 (347)
....... +.........+ ...++++ .-.+++|||.++.++..+.+
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHH
Confidence 1111110 00000000011 1112222 23589999999999999999
Q ss_pred HHhhCC---CCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 296 QLRMDG---WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 296 ~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
++.+.| +.+..+||+..+.+|.+-+++|+.++.++||||+++++|+|+.++
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~ 577 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGL 577 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCC
Confidence 998653 578899999999999999999999999999999999999999765
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.9e-24 Score=197.91 Aligned_cols=277 Identities=22% Similarity=0.269 Sum_probs=188.7
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|+ .|++.|.-..-.+..|+ +..+.||+|||+++.++++..... +..+-|++|+..||.|..+++..+.
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 455 77888877776666664 899999999999999988643333 3347799999999999999999999
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcCCC------CCCcccEEEEecchhhhccC-------
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQHT------NLRRVTYLVLDEADRMLDMG------- 190 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~~------~~~~~~~iIvDE~h~~~~~~------- 190 (347)
..+|+.+..+.++.+.......+ .++|+++|+..| +++++.... ....+.+.|+||++.++-..
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 99999999999987776655554 489999999999 777765542 35678999999999754111
Q ss_pred ---------ChHHHHHHHhhcCC--------C------------------------------------------------
Q 019041 191 ---------FEPQIRKIVTQIRP--------D------------------------------------------------ 205 (347)
Q Consensus 191 ---------~~~~~~~~~~~~~~--------~------------------------------------------------ 205 (347)
....+..+...+.. .
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 11111122221111 0
Q ss_pred -------------------------------------------------------------ccEEEEEeecchhHHHHHH
Q 019041 206 -------------------------------------------------------------RQTLYWSATWPREVETLAR 224 (347)
Q Consensus 206 -------------------------------------------------------------~~~i~lsaT~~~~~~~~~~ 224 (347)
.++.+||+|.......+..
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 384 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFRE 384 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHH
Confidence 1334444444333333333
Q ss_pred HhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHh-hcCCCeEEEEecCcccHHHHHHHHhhCCCC
Q 019041 225 QFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWP 303 (347)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~ 303 (347)
.|.-+ .+.+....+.........+ ......+.. .+.+.+.+ +..+.++||||++++.++.+++.|.+.|++
T Consensus 385 iY~l~--vv~IPtnkp~~r~d~~d~i-~~t~~~K~~-----aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~ 456 (830)
T PRK12904 385 IYNLD--VVVIPTNRPMIRIDHPDLI-YKTEKEKFD-----AVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIP 456 (830)
T ss_pred HhCCC--EEEcCCCCCeeeeeCCCeE-EECHHHHHH-----HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCc
Confidence 22211 1111111111111111111 112222222 45554443 345779999999999999999999999999
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 304 ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 304 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
...+|++ +.+|...+..|+.+...|+|||+++++|+||+
T Consensus 457 ~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 457 HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 9999996 67888899999999999999999999999997
No 93
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.93 E-value=5.2e-24 Score=201.36 Aligned_cols=289 Identities=16% Similarity=0.107 Sum_probs=175.9
Q ss_pred CCCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 48 VEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
..|.|||..++..+... .++++...+|.|||+.+.+.+...+... ...++||+||. .|..||..++.+.
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g------~~~rvLIVvP~-sL~~QW~~El~~k-- 221 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG------RAERVLILVPE-TLQHQWLVEMLRR-- 221 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC------CCCcEEEEcCH-HHHHHHHHHHHHH--
Confidence 36999999999876654 4799999999999987765554444332 14589999997 8999999998643
Q ss_pred CCCceEEEEECCCCCch--hhHhhcCCCcEEEeChHHHHHHH-hcCCCCCCcccEEEEecchhhhccC--ChHHHHHHHh
Q 019041 126 RAGIRSTCIYGGAPKGP--QIRDLRRGVEIVIATPGRLIDML-EAQHTNLRRVTYLVLDEADRMLDMG--FEPQIRKIVT 200 (347)
Q Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiv~T~~~l~~~~-~~~~~~~~~~~~iIvDE~h~~~~~~--~~~~~~~~~~ 200 (347)
.++....+.++..... .-.......+++|+|++.+...- ......-..++++|+||||++.... ....+..+..
T Consensus 222 -F~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 222 -FNLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred -hCCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 2344444433321110 00011224689999999887521 1111222468999999999986321 1222333322
Q ss_pred hcCCCccEEEEEeecchh-HH------------------HHHH-------------HhcC-CC----------------e
Q 019041 201 QIRPDRQTLYWSATWPRE-VE------------------TLAR-------------QFLR-NP----------------Y 231 (347)
Q Consensus 201 ~~~~~~~~i~lsaT~~~~-~~------------------~~~~-------------~~~~-~~----------------~ 231 (347)
.......++++||||... .. .+.+ .++. .+ .
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 223345789999997531 00 0110 0000 00 0
Q ss_pred ---------------------------------EEEeccc--cccccccc-ceeEEEecch-------------------
Q 019041 232 ---------------------------------KVIIGSL--ELKANQSI-NQVVEVVTEA------------------- 256 (347)
Q Consensus 232 ---------------------------------~~~~~~~--~~~~~~~~-~~~~~~~~~~------------------- 256 (347)
.+..... .....+.. ...+......
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 0000000 00000000 0000000000
Q ss_pred -------------hccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHH-hhCCCCceeecCCCCHHHHHHHHHH
Q 019041 257 -------------EKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQL-RMDGWPALSIHGDKNQSERDWVLAE 322 (347)
Q Consensus 257 -------------~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~ 322 (347)
..........+.++++.. .+.|+||||++++.+..+++.| ...|+++..+||+++..+|..++++
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~ 539 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAY 539 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHH
Confidence 000011233445555443 3679999999999999999999 5679999999999999999999999
Q ss_pred HhcC--CCCEEEEecccccCCCCCcCC
Q 019041 323 FRSG--RSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 323 f~~g--~~~vlv~T~~~~~Gidip~v~ 347 (347)
|+++ ..+|||||+++++|+|++.++
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~ 566 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFAS 566 (956)
T ss_pred HhcCCCCccEEEechhhccCCCccccc
Confidence 9974 589999999999999999764
No 94
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=6e-24 Score=195.83 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=127.9
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCC
Q 019041 30 QEANFPDYCLEVIA-----KLGFVEP---TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGP 101 (347)
Q Consensus 30 ~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 101 (347)
+.+++.+++.+.+. ..|+..| +|+|.+++..+..+++++.+++||+|||++|++|++..+.. +.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------GK 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--------cC
Confidence 55788888888776 5789888 99999999999999999999999999999999999987754 22
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcCCCCCC-------
Q 019041 102 IVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQHTNLR------- 173 (347)
Q Consensus 102 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~~~~~------- 173 (347)
.++||+|+++|+.|..+++..+....++.+..+.||.........+ .++|+|+||..+ +++++.+...++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 4889999999999999999999988999999999998877665554 589999999999 998887755544
Q ss_pred cccEEEEecchhhh
Q 019041 174 RVTYLVLDEADRML 187 (347)
Q Consensus 174 ~~~~iIvDE~h~~~ 187 (347)
.+.++|+|||+.++
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 45899999999765
No 95
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.92 E-value=1.6e-23 Score=201.70 Aligned_cols=271 Identities=19% Similarity=0.235 Sum_probs=172.2
Q ss_pred HHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH-hccCCCceE
Q 019041 53 IQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRAGIRS 131 (347)
Q Consensus 53 ~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~ 131 (347)
+..+++..+..++.++++|+||||||. .+..++...... ...++++.-|++.-+..+.+.+.+ ++...|..+
T Consensus 71 ~~~~Il~~l~~~~vvii~g~TGSGKTT-qlPq~lle~~~~------~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~V 143 (1283)
T TIGR01967 71 KREDIAEAIAENQVVIIAGETGSGKTT-QLPKICLELGRG------SHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKV 143 (1283)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCcHH-HHHHHHHHcCCC------CCceEecCCccHHHHHHHHHHHHHHhCCCcceEE
Confidence 335677777778899999999999996 333232221111 123566667988888887766654 433344444
Q ss_pred EEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecch-hhhccCChHH-HHHHHhhcCCCccEE
Q 019041 132 TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD-RMLDMGFEPQ-IRKIVTQIRPDRQTL 209 (347)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h-~~~~~~~~~~-~~~~~~~~~~~~~~i 209 (347)
.+-...... ......|.++|++.|+..+.... .+.++++||+||+| +.++.++... +..++.. +++.+++
T Consensus 144 GY~vR~~~~------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlI 215 (1283)
T TIGR01967 144 GYKVRFHDQ------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKII 215 (1283)
T ss_pred eeEEcCCcc------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEE
Confidence 332222111 12357899999999998886644 37899999999999 4777666543 4555433 3678999
Q ss_pred EEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchh-ccccHHHHHHHHHHHhh--cCCCeEEEEecC
Q 019041 210 YWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE-KYNSMFICRLIKLLKEV--MDGSRILIFTET 286 (347)
Q Consensus 210 ~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--~~~~~~lvf~~~ 286 (347)
+||||+.. ..+.+.+.+.|. +.+.... ..+...+....... .........+...+... ...+.+|||+++
T Consensus 216 lmSATld~--~~fa~~F~~apv-I~V~Gr~----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg 288 (1283)
T TIGR01967 216 ITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPG 288 (1283)
T ss_pred EEeCCcCH--HHHHHHhcCCCE-EEECCCc----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCC
Confidence 99999864 345554444443 3332111 11111221111110 00011112222222221 145799999999
Q ss_pred cccHHHHHHHHhhCCC---CceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 287 KKGCDQVTRQLRMDGW---PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 287 ~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.++++.+++.|.+.+. .+..+||.++.++|..+++.+ +..+|||||+++++|||+|+|+
T Consensus 289 ~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~ 350 (1283)
T TIGR01967 289 EREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIH 350 (1283)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCee
Confidence 9999999999987643 477899999999999886543 3468999999999999999984
No 96
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.92 E-value=1.2e-23 Score=195.77 Aligned_cols=282 Identities=14% Similarity=0.120 Sum_probs=161.9
Q ss_pred CCcHHHHhhHhhhhc----------CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALK----------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~----------~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 118 (347)
-++++|.++++.+.+ .+..++++|||||||++++..+...+... ..+++|+|||+.+|..|+.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~------~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL------KNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc------CCCeEEEEECcHHHHHHHHH
Confidence 378899999987532 25799999999999998776654443221 26789999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCCchhh-Hhhc-CCCcEEEeChHHHHHHHhcC--CCCCCcc-cEEEEecchhhhccCChH
Q 019041 119 EALKFGSRAGIRSTCIYGGAPKGPQI-RDLR-RGVEIVIATPGRLIDMLEAQ--HTNLRRV-TYLVLDEADRMLDMGFEP 193 (347)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~iiv~T~~~l~~~~~~~--~~~~~~~-~~iIvDE~h~~~~~~~~~ 193 (347)
.+..++.... .. ....... ..+. ....|+|+|.+++...+... ....... .+||+||||+....
T Consensus 312 ~f~~~~~~~~------~~-~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~---- 380 (667)
T TIGR00348 312 EFQSLQKDCA------ER-IESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG---- 380 (667)
T ss_pred HHHhhCCCCC------cc-cCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----
Confidence 9998753210 00 1111112 1222 23689999999998643321 1111112 38999999986433
Q ss_pred HHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcC----CCeEEEecccccccccccceeEEEecc-----hhc------
Q 019041 194 QIRKIVTQIRPDRQTLYWSATWPREVETLARQFLR----NPYKVIIGSLELKANQSINQVVEVVTE-----AEK------ 258 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------ 258 (347)
.+...+....+....++|||||.+.........++ .+...+...............+..... ...
T Consensus 381 ~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 381 ELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 33334433335678999999986431111111111 111111000000000000000000000 000
Q ss_pred ---------------------------------cccHHHHHHHHHHHhhc--CCCeEEEEecCcccHHHHHHHHhhC---
Q 019041 259 ---------------------------------YNSMFICRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMD--- 300 (347)
Q Consensus 259 ---------------------------------~~~~~~~~l~~~~~~~~--~~~~~lvf~~~~~~~~~~~~~L~~~--- 300 (347)
.....+..+.+-..... .++|++|+|.++++|..+++.|.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 00001111111111111 2479999999999999999988654
Q ss_pred --CCCceeecCCCCHH---------------------HHHHHHHHHhc-CCCCEEEEecccccCCCCCcCC
Q 019041 301 --GWPALSIHGDKNQS---------------------ERDWVLAEFRS-GRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 301 --~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+....++++..+.+ ....++++|+. ++.+|||+++++.+|+|.|.++
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~ 611 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILN 611 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccc
Confidence 23445566544332 12467888976 6789999999999999999875
No 97
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.92 E-value=1.1e-23 Score=189.41 Aligned_cols=277 Identities=18% Similarity=0.174 Sum_probs=172.3
Q ss_pred CCCcHHHHhhHhhhhc----C-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 48 VEPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~----~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
..+|.||..|+..+.+ | +.++++|+||+|||.+++..+ .++.+.. ..+++|+|+.+++|.+|....+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii-~rL~r~~-----~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAII-DRLIKSG-----WVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHH-HHHHhcc-----hhheeeEEechHHHHHHHHHHHHH
Confidence 4689999999987654 3 569999999999999866544 4444432 267999999999999999999998
Q ss_pred hccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC-----CCCCCcccEEEEecchhhhccCChHHHHH
Q 019041 123 FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-----HTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (347)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (347)
+..... ....+.+.... .+++|.++|++++....... .+....+|+||+||||+- ....+..
T Consensus 238 ~~P~~~-~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~ 304 (875)
T COG4096 238 FLPFGT-KMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSS 304 (875)
T ss_pred hCCCcc-ceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHH
Confidence 865432 22222221111 14799999999999887655 234567999999999985 4445557
Q ss_pred HHhhcCCCccEEEEEeecchhHHHHHHHhc-CCCeEEEeccccc----------------------ccccc---------
Q 019041 198 IVTQIRPDRQTLYWSATWPREVETLARQFL-RNPYKVIIGSLEL----------------------KANQS--------- 245 (347)
Q Consensus 198 ~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~--------- 245 (347)
++.++. ...+++||||........-.++ +.|...+.-.... .....
T Consensus 305 I~dYFd--A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFD--AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHH--HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 777663 2345569998765443333344 3333222111100 00000
Q ss_pred -c---ceeEEEecch-----hccccHHHHHHHHHHHhhcC---CCeEEEEecCcccHHHHHHHHhhC-----CCCceeec
Q 019041 246 -I---NQVVEVVTEA-----EKYNSMFICRLIKLLKEVMD---GSRILIFTETKKGCDQVTRQLRMD-----GWPALSIH 308 (347)
Q Consensus 246 -~---~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~---~~~~lvf~~~~~~~~~~~~~L~~~-----~~~~~~~~ 308 (347)
+ ...+...... ..........+.+.+..... -+|+||||.+..||+.+...|.+. |.-+..++
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0 0000000000 00111122333444444222 259999999999999999999754 33355667
Q ss_pred CCCCHHHHHHHHHHHhc-CC-CCEEEEecccccCCCCCcCC
Q 019041 309 GDKNQSERDWVLAEFRS-GR-SPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 309 ~~~~~~~r~~~~~~f~~-g~-~~vlv~T~~~~~Gidip~v~ 347 (347)
++.... +..+..|.. .+ .+|.|+.+++.+|+|+|.|+
T Consensus 463 ~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~ 501 (875)
T COG4096 463 GDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVV 501 (875)
T ss_pred ccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchhee
Confidence 765533 344556654 33 45888889999999999985
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=5.6e-23 Score=189.17 Aligned_cols=130 Identities=24% Similarity=0.282 Sum_probs=102.2
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
+|+ .|++.|.-.--.+.+|+ +..++||.|||+++.+|++..... +..+.|++|+..||.+-.+++..+.
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 454 66777765554555554 889999999999999998877665 4559999999999999999999999
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcC-CCCC-----CcccEEEEecchhhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ-HTNL-----RRVTYLVLDEADRML 187 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~-~~~~-----~~~~~iIvDE~h~~~ 187 (347)
..+|+.+.++.++.+.......+ .++|+++|+..| +++++.+ .... ..+.+.||||++.++
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y--~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAY--NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcC--CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 99999999998887654332222 689999999999 7777655 3332 578899999999765
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.8e-22 Score=187.25 Aligned_cols=287 Identities=20% Similarity=0.249 Sum_probs=203.2
Q ss_pred HHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHH
Q 019041 40 EVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (347)
Q Consensus 40 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 119 (347)
..-...|| .|-++|++++..+.++.+++|+||||+|||+++-.++...+.. +.+++|.+|.++|..|.+..
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHH
Confidence 34456788 8999999999999999999999999999999888777666655 66799999999999998877
Q ss_pred HH-HhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHH
Q 019041 120 AL-KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKI 198 (347)
Q Consensus 120 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~ 198 (347)
+. +|++. .-.+..++|+..... ++.++|+|.+.|...+..+...+..+..||+||+|.+.+...+..+...
T Consensus 182 l~~~fgdv-~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~ 253 (1041)
T COG4581 182 LLAKFGDV-ADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEV 253 (1041)
T ss_pred HHHHhhhh-hhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHH
Confidence 66 44332 113455566554433 4789999999999999988888899999999999999888889999999
Q ss_pred HhhcCCCccEEEEEeecchhHHHHHHHhc---CCCeEEEeccccccccccc----ceeEEEecchhc---cccH------
Q 019041 199 VTQIRPDRQTLYWSATWPREVETLARQFL---RNPYKVIIGSLELKANQSI----NQVVEVVTEAEK---YNSM------ 262 (347)
Q Consensus 199 ~~~~~~~~~~i~lsaT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~------ 262 (347)
+-.++...++++||||.+...+. ..++. ..|..+.+......+.... ...+...+...+ ....
T Consensus 254 Ii~lP~~v~~v~LSATv~N~~EF-~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l 332 (1041)
T COG4581 254 IILLPDHVRFVFLSATVPNAEEF-AEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSL 332 (1041)
T ss_pred HHhcCCCCcEEEEeCCCCCHHHH-HHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhh
Confidence 99998888999999998765443 33222 2333333332221111100 011111111111 0000
Q ss_pred ---------------------------------HHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh----------
Q 019041 263 ---------------------------------FICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM---------- 299 (347)
Q Consensus 263 ---------------------------------~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~---------- 299 (347)
....+...+... ..-++++|+-+++.|+..+..+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~-~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e 411 (1041)
T COG4581 333 SCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD-NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE 411 (1041)
T ss_pred hccchhccccCccccccccccccccCCcccccccchHHHhhhhhh-cCCceEEEEEchhhHHHHHHHhcccccccCCcHH
Confidence 000112222111 223789999999999988766641
Q ss_pred ------------------CCC-------------CceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 300 ------------------DGW-------------PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 300 ------------------~~~-------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.+. .+.+.|+++=+..+..+.+.|..|-++|+++|..++.|+|.|.
T Consensus 412 ~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa 488 (1041)
T COG4581 412 RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488 (1041)
T ss_pred HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc
Confidence 111 1346788999999999999999999999999999999999995
No 100
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.90 E-value=1.1e-21 Score=158.08 Aligned_cols=186 Identities=44% Similarity=0.654 Sum_probs=148.0
Q ss_pred HCCCCCCcHHHHhhHhhhhcC-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 44 KLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
..++..++++|.+++..+... +++++.+|||+|||.+++..++..+.... ..++++++|+..++.|+.+.+.+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHH
Confidence 356778999999999999988 99999999999999988888887766532 45799999999999999999998
Q ss_pred hccCCCceEEEEECCCCCchhhHhhcCCC-cEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhh
Q 019041 123 FGSRAGIRSTCIYGGAPKGPQIRDLRRGV-EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (347)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (347)
+............++......+.....+. +++++|++.+.............++++|+||+|++....+...+..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 76554433444444444344444444455 99999999999988877666778999999999998875677888888888
Q ss_pred cCCCccEEEEEeecchhHHHHHHHhcCCCeEEEe
Q 019041 202 IRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (347)
Q Consensus 202 ~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~ 235 (347)
..+..+++++|||+..........+......+..
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 7778899999999998888888887775544433
No 101
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=8.6e-21 Score=182.22 Aligned_cols=145 Identities=25% Similarity=0.263 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHh----hhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQAQGWP----MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~~~i~----~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 109 (347)
+++.+.+.+...|+ ++|+.|.++++ .+.+++++++.||||+|||++|++|++..... +.+++|.|||
T Consensus 231 ~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCc
Confidence 44567777777888 58999998666 45568899999999999999999998876552 4589999999
Q ss_pred HHHHHHHHH-HHHHhccCC--CceEEEEECCCCCc---------------------------------------------
Q 019041 110 RELAVQIQE-EALKFGSRA--GIRSTCIYGGAPKG--------------------------------------------- 141 (347)
Q Consensus 110 ~~l~~q~~~-~~~~~~~~~--~~~~~~~~~~~~~~--------------------------------------------- 141 (347)
++|..|+.. .+..+.+.. ++++..+.|+.+.-
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999865 444443322 25555444443110
Q ss_pred -----hh---------------------hHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 142 -----PQ---------------------IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 142 -----~~---------------------~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
.. .+.....++|+|+++..++..+.....-+...+++|+||||++.
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~ 453 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLP 453 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHH
Confidence 00 01112358899999999888764443334567899999999875
No 102
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.89 E-value=4.3e-21 Score=175.64 Aligned_cols=271 Identities=24% Similarity=0.346 Sum_probs=182.8
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|+ .|+..|+-....+.+|+++-+.||||.|||. |.+.+...+.. .++++++|+||..|+.|..+.+.++.
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK-------KGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh-------cCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 355 9999999999999999999999999999996 44433333332 26799999999999999999999987
Q ss_pred cCCC-ceEEE-EECCCCCchh---hHhh-cCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC--------
Q 019041 125 SRAG-IRSTC-IYGGAPKGPQ---IRDL-RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-------- 190 (347)
Q Consensus 125 ~~~~-~~~~~-~~~~~~~~~~---~~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-------- 190 (347)
...+ .++.. .|+.-+..+. ...+ ..+.+|+|+|.+.+.+.+....- .+++++++|+++.++..+
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhccccHHHHHH
Confidence 7665 33333 4444333221 2222 33689999999888776653221 469999999999766432
Q ss_pred ---ChHH-------HHHHH----------------hh--------cCCCccEEEEEeecchh--HHHHHHHhcCCCeEEE
Q 019041 191 ---FEPQ-------IRKIV----------------TQ--------IRPDRQTLYWSATWPRE--VETLARQFLRNPYKVI 234 (347)
Q Consensus 191 ---~~~~-------~~~~~----------------~~--------~~~~~~~i~lsaT~~~~--~~~~~~~~~~~~~~~~ 234 (347)
|... +..+. +. -.+..+++..|||..+. ...+.+.+++-.
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe---- 303 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE---- 303 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc----
Confidence 2111 01110 00 01335788999996543 223444444321
Q ss_pred ecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecC---cccHHHHHHHHhhCCCCceeecCCC
Q 019041 235 IGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTET---KKGCDQVTRQLRMDGWPALSIHGDK 311 (347)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~---~~~~~~~~~~L~~~~~~~~~~~~~~ 311 (347)
+....... .+ .+...... .....+.+++++. |...|||++. ++.++.+++.|+++|+++..+|++
T Consensus 304 vG~~~~~L-RN---IvD~y~~~-----~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~- 371 (1187)
T COG1110 304 VGSGGEGL-RN---IVDIYVES-----ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE- 371 (1187)
T ss_pred cCccchhh-hh---eeeeeccC-----ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-
Confidence 11111111 11 11111111 2333677778775 4577999999 899999999999999999999984
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEe----cccccCCCCCcC
Q 019041 312 NQSERDWVLAEFRSGRSPIMTAT----DVAARGLGRITV 346 (347)
Q Consensus 312 ~~~~r~~~~~~f~~g~~~vlv~T----~~~~~Gidip~v 346 (347)
....++.|..|++++||+. ..+.+|+|+|..
T Consensus 372 ----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~r 406 (1187)
T COG1110 372 ----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHR 406 (1187)
T ss_pred ----chhhhhhhccCceeEEEEecccccceeecCCchhh
Confidence 2567899999999999987 578999999964
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=2.3e-21 Score=182.55 Aligned_cols=290 Identities=16% Similarity=0.158 Sum_probs=185.7
Q ss_pred CCcHHHHhhHhhhhcC---C-cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMALKG---R-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~---~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
..++.|..+++.+... . .+++.||||.|||.+.+.++...+... .....+++++.|.++++++..+.++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 4588999999887653 4 788999999999999888887776663 1137799999999999999999999865
Q ss_pred cCCCceEEEEECCCCCchhhHh---------h-----cCCCcEEEeChHHHHHHH-hcCCCC-C--CcccEEEEecchhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRD---------L-----RRGVEIVIATPGRLIDML-EAQHTN-L--RRVTYLVLDEADRM 186 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~iiv~T~~~l~~~~-~~~~~~-~--~~~~~iIvDE~h~~ 186 (347)
...+......++.....-.... . ..-..++++|+....... ...... + -..+++|+||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 5444333212333211100000 0 001334444544443321 111111 1 12479999999988
Q ss_pred hccCChHHHHHHHhhc-CCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHH
Q 019041 187 LDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFIC 265 (347)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (347)
........+..++..+ ..+..++++|||++................+.............. +...............
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~--~~~~~~~~~~~~~~~~ 428 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPG--LKRKERVDVEDGPQEE 428 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccc--cccccchhhhhhhhHh
Confidence 7763333333333333 357889999999999999988888776655544322100000000 0000000000000011
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHh----cCCCCEEEEecccccCC
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFR----SGRSPIMTATDVAARGL 341 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~T~~~~~Gi 341 (347)
...........+++++|.||++..|..+++.|+..+.++..+||.+...+|.+.++++. .++..|+|||++++.|+
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 22233344556889999999999999999999988878999999999999998877654 46778999999999999
Q ss_pred CCC
Q 019041 342 GRI 344 (347)
Q Consensus 342 dip 344 (347)
|+.
T Consensus 509 Did 511 (733)
T COG1203 509 DID 511 (733)
T ss_pred ccc
Confidence 985
No 104
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=6.6e-21 Score=172.72 Aligned_cols=279 Identities=18% Similarity=0.176 Sum_probs=197.7
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.++| +|-.+|++++..+.+|.+++|.|+|.+|||+++-.++...-.. .-|++|-+|-++|-.|-.+.|++.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h--------~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH--------MTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh--------ccceEecchhhhhccchHHHHHHh
Confidence 3566 7889999999999999999999999999999876654433222 568999999999999988888764
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcC
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (347)
-... ..++|+....++ +..+|+|.+-|...+.++...+.++.+||+||+|.+-+...+-.+.+++=.++
T Consensus 364 F~Dv----gLlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 364 FGDV----GLLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLP 432 (1248)
T ss_pred cccc----ceeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecc
Confidence 2222 277777765544 78999999999999998888889999999999998888778888888888888
Q ss_pred CCccEEEEEeecchhHHHHHHHhcC-CCeEEEecccccccccccceeEEEecc---------------------------
Q 019041 204 PDRQTLYWSATWPREVETLARQFLR-NPYKVIIGSLELKANQSINQVVEVVTE--------------------------- 255 (347)
Q Consensus 204 ~~~~~i~lsaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 255 (347)
...++|++|||.+...+ ++.+... ....+++.... ..+....+++....+
T Consensus 433 ~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~-kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~a 510 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTS-KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEA 510 (1248)
T ss_pred ccceEEEEeccCCChHH-HHHHhhhccCceEEEEecC-CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccc
Confidence 89999999999876544 3332211 11111111110 000111111100000
Q ss_pred ------------------------------------hhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh
Q 019041 256 ------------------------------------AEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM 299 (347)
Q Consensus 256 ------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~ 299 (347)
..+..+...-.++..+.+. .-=+++|||-+++.|+..+++|..
T Consensus 511 k~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~a~~L~~ 589 (1248)
T KOG0947|consen 511 KFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEYADYLTN 589 (1248)
T ss_pred cccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-ccCceEEEEEccccHHHHHHHHhc
Confidence 0000001122233333321 223799999999999999999874
Q ss_pred CC---------------------------------------CCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccC
Q 019041 300 DG---------------------------------------WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARG 340 (347)
Q Consensus 300 ~~---------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 340 (347)
.+ ..++++||+.-+--+.-+.-.|..|-++||+||..+++|
T Consensus 590 ~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMG 669 (1248)
T KOG0947|consen 590 LNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMG 669 (1248)
T ss_pred cCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhh
Confidence 21 235678888888888888889999999999999999999
Q ss_pred CCCCc
Q 019041 341 LGRIT 345 (347)
Q Consensus 341 idip~ 345 (347)
+|.|.
T Consensus 670 VNMPA 674 (1248)
T KOG0947|consen 670 VNMPA 674 (1248)
T ss_pred cCCCc
Confidence 99995
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=4.1e-21 Score=174.73 Aligned_cols=312 Identities=20% Similarity=0.228 Sum_probs=208.2
Q ss_pred CCCCCccccccCCCCHHHHH-HHHHCCCCCCcHHHHhhHh--hhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccC
Q 019041 21 DVPRPIRIFQEANFPDYCLE-VIAKLGFVEPTPIQAQGWP--MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQ 97 (347)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~Q~~~i~--~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~ 97 (347)
++.++...|.+ .+++.... ..+..|...++.+|.+++. .+++++|.+..+||+.|||+++-+.++..+...
T Consensus 195 ~~etl~~~~a~-~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~----- 268 (1008)
T KOG0950|consen 195 YLETLLFGFAK-RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR----- 268 (1008)
T ss_pred chhhhhhhhhh-cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-----
Confidence 33344444444 34444444 3445899999999999984 577899999999999999999988888887664
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC--CCCCCcc
Q 019041 98 GEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ--HTNLRRV 175 (347)
Q Consensus 98 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~ 175 (347)
...++++.|..+.+..-...+..+....|+.+...+|........ ..-.+.|+|.++-...+... ...+..+
T Consensus 269 --rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~ 342 (1008)
T KOG0950|consen 269 --RRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFL 342 (1008)
T ss_pred --hhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCcccc
Confidence 446899999999998888888889888999888888655443322 23589999999876655332 1234678
Q ss_pred cEEEEecchhhhccCChHHHHHHHhhc-----CCCccEEEEEeecchhHHHHHHHhcCCCeEEE-eccccccccccccee
Q 019041 176 TYLVLDEADRMLDMGFEPQIRKIVTQI-----RPDRQTLYWSATWPREVETLARQFLRNPYKVI-IGSLELKANQSINQV 249 (347)
Q Consensus 176 ~~iIvDE~h~~~~~~~~~~~~~~~~~~-----~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (347)
++|||||.|.+.+.+.+..+..++.+. ....|+++||||++.- .....++....... ...........+...
T Consensus 343 g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~ 420 (1008)
T KOG0950|consen 343 GMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSL 420 (1008)
T ss_pred CcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcc
Confidence 999999999998888777777776655 2335799999998653 33333433211111 111111111111111
Q ss_pred EEEecchhccccHHH------------HHHHHHHHhhc-CCCeEEEEecCcccHHHHHHHHhh-----------------
Q 019041 250 VEVVTEAEKYNSMFI------------CRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRM----------------- 299 (347)
Q Consensus 250 ~~~~~~~~~~~~~~~------------~~l~~~~~~~~-~~~~~lvf~~~~~~~~~~~~~L~~----------------- 299 (347)
++..+ ..+....+. ..+..++.+.. .+.++||||+++..|+.++..+..
T Consensus 421 i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~ 499 (1008)
T KOG0950|consen 421 IYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWEL 499 (1008)
T ss_pred cccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHH
Confidence 11110 000000000 12333333222 345699999999999988755432
Q ss_pred ---------------------CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 300 ---------------------DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 300 ---------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
..+.+..+|.+.+.++|+.+...|+.|...|+.||+.++-|++.|..|
T Consensus 500 ~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArR 568 (1008)
T KOG0950|consen 500 LSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARR 568 (1008)
T ss_pred HHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcce
Confidence 123456788899999999999999999999999999999999999753
No 106
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.9e-20 Score=172.23 Aligned_cols=130 Identities=25% Similarity=0.318 Sum_probs=100.7
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|+ .|++.|.-..-.+..|+ +..+.||+|||+++.++++..... +..+-+++|+..||.|-.+++..+.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 455 78888887776666665 899999999999999888877776 6679999999999999999999999
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHH-HHHhcCC------CCCCcccEEEEecchhhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DMLEAQH------TNLRRVTYLVLDEADRML 187 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~~------~~~~~~~~iIvDE~h~~~ 187 (347)
..+|+.+..+.++.........+ .++|+++|...|. ++++... .....+.+.||||++.++
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 99999999998776554443333 5799999987763 3333221 113467899999999643
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.87 E-value=3.4e-20 Score=176.32 Aligned_cols=285 Identities=19% Similarity=0.203 Sum_probs=175.8
Q ss_pred CCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|++||.+.+..+. .+.++|+...+|.|||+.++.. +..+.... +....+|||||. ++..+|.+++.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999998764 4678999999999999865443 33332211 114568999996 55688999999986
Q ss_pred cCCCceEEEEECCCCCchhhHh---hcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRD---LRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (347)
. .+++..++|.......... ....++|+|+|++.+...... +.-..+++||+||+|++-+.. ......+..
T Consensus 243 p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~~--Sklskalr~ 316 (1033)
T PLN03142 243 P--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNEN--SLLSKTMRL 316 (1033)
T ss_pred C--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCHH--HHHHHHHHH
Confidence 5 4566666665443222211 123579999999998764321 222358999999999986532 234444555
Q ss_pred cCCCccEEEEEeecchh-HHHHHHHh-cCCCeEEE----------------------------------eccccc--ccc
Q 019041 202 IRPDRQTLYWSATWPRE-VETLARQF-LRNPYKVI----------------------------------IGSLEL--KAN 243 (347)
Q Consensus 202 ~~~~~~~i~lsaT~~~~-~~~~~~~~-~~~~~~~~----------------------------------~~~~~~--~~~ 243 (347)
+. ....+++||||-.. ...+...+ +..|..+. ....+. ..+
T Consensus 317 L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 53 45678999997532 11110000 00000000 000000 000
Q ss_pred cccceeEEEe-cc-hhc-------------------------------------------------------cccHHHHH
Q 019041 244 QSINQVVEVV-TE-AEK-------------------------------------------------------YNSMFICR 266 (347)
Q Consensus 244 ~~~~~~~~~~-~~-~~~-------------------------------------------------------~~~~~~~~ 266 (347)
+.....+... +. ... ..+.....
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 0000000000 00 000 00011112
Q ss_pred HHHHHHhh-cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCC---CCEEEEecccccCCC
Q 019041 267 LIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR---SPIMTATDVAARGLG 342 (347)
Q Consensus 267 l~~~~~~~-~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~Gid 342 (347)
+..++... ..+.++|||+........+.++|...|+.+..++|.++..+|..+++.|+... ..+|++|.+++.|+|
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 22222222 24679999999999999999999999999999999999999999999998643 347899999999999
Q ss_pred CCcC
Q 019041 343 RITV 346 (347)
Q Consensus 343 ip~v 346 (347)
+...
T Consensus 556 Lt~A 559 (1033)
T PLN03142 556 LATA 559 (1033)
T ss_pred hhhC
Confidence 8764
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.86 E-value=5.1e-20 Score=171.00 Aligned_cols=275 Identities=18% Similarity=0.209 Sum_probs=184.7
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH-HhccCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRA 127 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~ 127 (347)
..+....++...+.+++.+++.|+||+|||.. +...+..... +.+..+.+.=|++.-|..+.+.+. +++...
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTq-lP~~lle~g~------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQ-LPQFLLEEGL------GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHH-HHHHHHhhhc------ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 34566677788888899999999999999963 3333322221 124567777799988888877766 455555
Q ss_pred CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh-hhccCC-hHHHHHHHhhcCCC
Q 019041 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR-MLDMGF-EPQIRKIVTQIRPD 205 (347)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~-~~~~~~-~~~~~~~~~~~~~~ 205 (347)
|-.+.+.....+.- .....|-++|.+.|++.+..... ++.+++||+||+|. .++.++ ...+..++...+++
T Consensus 123 G~~VGY~iRfe~~~------s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 123 GETVGYSIRFESKV------SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred CceeeEEEEeeccC------CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCC
Confidence 54454443332221 12468999999999998887665 78999999999994 233232 23444455666667
Q ss_pred ccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhh--cCCCeEEEE
Q 019041 206 RQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEV--MDGSRILIF 283 (347)
Q Consensus 206 ~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~lvf 283 (347)
.++|.||||+.. ..+..++++...+.+.... ..+...+......+. .....+...+... ...|.+|||
T Consensus 196 LKiIimSATld~---~rfs~~f~~apvi~i~GR~----fPVei~Y~~~~~~d~---~l~~ai~~~v~~~~~~~~GdILvF 265 (845)
T COG1643 196 LKLIIMSATLDA---ERFSAYFGNAPVIEIEGRT----YPVEIRYLPEAEADY---ILLDAIVAAVDIHLREGSGSILVF 265 (845)
T ss_pred ceEEEEecccCH---HHHHHHcCCCCEEEecCCc----cceEEEecCCCCcch---hHHHHHHHHHHHhccCCCCCEEEE
Confidence 899999999876 3344455543333332111 111222211111111 0233344433332 235789999
Q ss_pred ecCcccHHHHHHHHhh----CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 284 TETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 284 ~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+..+..+..++.|.+ ....+..+||.++.+++.++++.-..|..+|++||+++++++.||+|+
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr 333 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIR 333 (845)
T ss_pred CCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeE
Confidence 9999999999999987 346788899999999999988877777778999999999999999985
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=2.5e-19 Score=164.00 Aligned_cols=279 Identities=19% Similarity=0.209 Sum_probs=184.0
Q ss_pred CCCcHHHHhhHhhhhcC----CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 48 VEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..+.+.|+.+++.+... +..++.+.||||||.+|+-.+...+.+ |+.+|+|+|-.+|..|+.+.++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHH
Confidence 46788999999988765 679999999999999988877777666 778999999999999999988863
Q ss_pred ccCCCceEEEEECCCCCchhh---Hhh-cCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC------ChH
Q 019041 124 GSRAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG------FEP 193 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~------~~~ 193 (347)
.+.++..++++-+..+.. +.. .....|+|||-..++- .++++++||+||=|....+. ...
T Consensus 269 ---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~-------Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 ---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred ---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC-------chhhccEEEEeccccccccCCcCCCcCHH
Confidence 456778888887776553 333 3468999999544433 57789999999999765432 344
Q ss_pred HHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHH-
Q 019041 194 QIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLK- 272 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 272 (347)
.+.-+..+. ..+++++-||||+-+-...+ .-+....+................+............+...+++.+.
T Consensus 339 dvA~~Ra~~-~~~pvvLgSATPSLES~~~~--~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~ 415 (730)
T COG1198 339 DVAVLRAKK-ENAPVVLGSATPSLESYANA--ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRK 415 (730)
T ss_pred HHHHHHHHH-hCCCEEEecCCCCHHHHHhh--hcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHH
Confidence 444444444 67889999999765433222 22211222222111111122222333333333222112234444443
Q ss_pred hhcCCCeEEEEecCcccHH------------------------------------------------------------H
Q 019041 273 EVMDGSRILIFTETKKGCD------------------------------------------------------------Q 292 (347)
Q Consensus 273 ~~~~~~~~lvf~~~~~~~~------------------------------------------------------------~ 292 (347)
....+..+|+|.|.+..+- +
T Consensus 416 ~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gter 495 (730)
T COG1198 416 TLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTER 495 (730)
T ss_pred HHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHH
Confidence 3344678888877654432 3
Q ss_pred HHHHHhhC--CCCceeecCCCCH--HHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 293 VTRQLRMD--GWPALSIHGDKNQ--SERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 293 ~~~~L~~~--~~~~~~~~~~~~~--~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+.+.|++. +.++..+.+++.. ..-...+..|..|+.+|||.|++++.|.|.|+|.
T Consensus 496 ieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vt 554 (730)
T COG1198 496 IEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVT 554 (730)
T ss_pred HHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccce
Confidence 34444332 4566677766554 3346789999999999999999999999999973
No 110
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=7.2e-21 Score=161.60 Aligned_cols=288 Identities=18% Similarity=0.164 Sum_probs=186.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC---CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEE
Q 019041 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG---RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~---~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (347)
..|..-.+.|.+-=-|+ .-..+||||...+..+..+ ++.++..|+|+|||++.+.++..- ++++
T Consensus 282 YDFRND~~npdl~idLK--Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----------kK~c 348 (776)
T KOG1123|consen 282 YDFRNDNVNPDLDIDLK--PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----------KKSC 348 (776)
T ss_pred hccccCCCCCCCCcCcC--cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----------cccE
Confidence 33444344444333333 2347899999999887764 578999999999999876554432 6679
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCC--------CCCCcc
Q 019041 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH--------TNLRRV 175 (347)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--------~~~~~~ 175 (347)
|+||.+..-++||...++.|..-.+-.++.++.+..+. ...++.|+|+|+.++...-.+.. +.-..|
T Consensus 349 lvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EW 423 (776)
T KOG1123|consen 349 LVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREW 423 (776)
T ss_pred EEEecCccCHHHHHHHHHhhcccCccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCee
Confidence 99999999999999999999777676777776665442 23468999999987743221111 113468
Q ss_pred cEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHH-HhcCCCeEEEecccc--------------c
Q 019041 176 TYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLAR-QFLRNPYKVIIGSLE--------------L 240 (347)
Q Consensus 176 ~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~ 240 (347)
+++++||+|.+....|+..+..+..+. .+++|||+-+..+.... .++..|..+..+=-+ +
T Consensus 424 GllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEV 498 (776)
T KOG1123|consen 424 GLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEV 498 (776)
T ss_pred eeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeee
Confidence 999999999887776776666665443 69999998765443322 122222222111000 0
Q ss_pred cccc-------------ccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceee
Q 019041 241 KANQ-------------SINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSI 307 (347)
Q Consensus 241 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~ 307 (347)
+-+- ......+.... .+ ....+-|+..-.. .+.|+|||..++-....++-.|. --.+
T Consensus 499 WCpMt~eFy~eYL~~~t~kr~lLyvMNP-~K--FraCqfLI~~HE~--RgDKiIVFsDnvfALk~YAikl~-----KpfI 568 (776)
T KOG1123|consen 499 WCPMTPEFYREYLRENTRKRMLLYVMNP-NK--FRACQFLIKFHER--RGDKIIVFSDNVFALKEYAIKLG-----KPFI 568 (776)
T ss_pred ecCCCHHHHHHHHhhhhhhhheeeecCc-ch--hHHHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHcC-----CceE
Confidence 0000 00000111111 11 1111223333333 57799999999887777776663 2356
Q ss_pred cCCCCHHHHHHHHHHHhcC-CCCEEEEecccccCCCCCcCC
Q 019041 308 HGDKNQSERDWVLAEFRSG-RSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 308 ~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidip~v~ 347 (347)
+|.+++.+|-++++.|+.+ .++-|+.+.+....||+|.-|
T Consensus 569 YG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAn 609 (776)
T KOG1123|consen 569 YGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEAN 609 (776)
T ss_pred ECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCccc
Confidence 8999999999999999865 578999999999999999754
No 111
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.84 E-value=1.2e-19 Score=160.96 Aligned_cols=276 Identities=19% Similarity=0.218 Sum_probs=196.0
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.|-|+|..++..+-++.+++|.|.|.+|||.++-.++...+.. +.|+++-+|-++|-.|-++++..--..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 6788999999999999999999999999999888887777666 678999999999999988777642122
Q ss_pred ceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccE
Q 019041 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (347)
+...+|+.+-.+ .+.-+|+|.+-|...+.++..-+..+..+|+||+|.+-+...+-.|.+-+=.++...+.
T Consensus 199 --VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 199 --VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred --cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 334555554433 36789999999999998888777889999999999998877666666666667788899
Q ss_pred EEEEeecchhHHHHHHHhc---CCCeEEEeccccccccccc------ceeEEEecchhccccHHHH--------------
Q 019041 209 LYWSATWPREVETLARQFL---RNPYKVIIGSLELKANQSI------NQVVEVVTEAEKYNSMFIC-------------- 265 (347)
Q Consensus 209 i~lsaT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-------------- 265 (347)
+++|||++... .++++.+ .+|--+.+.+..+.+...+ ...+..++...+.......
T Consensus 270 VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 270 VFLSATIPNAR-QFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEEeccCCCHH-HHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999987654 4444432 3344444433322221111 1112222222222111111
Q ss_pred ------------------------HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCC--------------------
Q 019041 266 ------------------------RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG-------------------- 301 (347)
Q Consensus 266 ------------------------~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~-------------------- 301 (347)
.+..++-.. ...++|||+-++++|+.++-.+.+.+
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~ 427 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQ 427 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHh
Confidence 222222211 23489999999999999987765422
Q ss_pred -------------------CCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 302 -------------------WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 302 -------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
..+.+.|++.-+--+..+.=.|++|-+++|+||..++.|+|.|.
T Consensus 428 LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA 490 (1041)
T KOG0948|consen 428 LSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA 490 (1041)
T ss_pred cChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc
Confidence 22457788888777777777899999999999999999999995
No 112
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.82 E-value=9.8e-19 Score=132.82 Aligned_cols=144 Identities=43% Similarity=0.583 Sum_probs=110.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
+++++.+|||+|||.+++..+....... ...+++|++|+..++.|+.+.+..+... +..+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 4689999999999998887777665542 2568999999999999999999887654 66777777776665555
Q ss_pred HhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeec
Q 019041 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (347)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~ 215 (347)
.......+++++|++++.............++++|+||+|.+....................+++++||||
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 45556789999999999888776655556789999999999877655443222333345678899999996
No 113
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.82 E-value=2.1e-19 Score=142.90 Aligned_cols=153 Identities=22% Similarity=0.155 Sum_probs=101.1
Q ss_pred CCcHHHHhhHhhhhc-------CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALK-------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~-------~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 121 (347)
.|+++|.+++..+.+ .+++++.+|||+|||.+++..+..... ++++++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999999874 588999999999999987755554422 69999999999999999997
Q ss_pred HhccCCCceEEEE-----------ECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCC-----------CCCCcccEEE
Q 019041 122 KFGSRAGIRSTCI-----------YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-----------TNLRRVTYLV 179 (347)
Q Consensus 122 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-----------~~~~~~~~iI 179 (347)
.+........... .................+++++|++.+........ .....+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 6644321111000 00000111112224467899999999987754311 2234679999
Q ss_pred EecchhhhccCChHHHHHHHhhcCCCccEEEEEeecch
Q 019041 180 LDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
+||||+..... .+..++. .+...+++|||||.+
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99999874432 1444444 467789999999864
No 114
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.82 E-value=6.6e-18 Score=148.99 Aligned_cols=274 Identities=18% Similarity=0.196 Sum_probs=178.2
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH-HhccCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRA 127 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~ 127 (347)
....+-.+++..+.+++.+++.|+||+|||. .+.-.+....-.. ..++-+--|++.-+..+.+... +.+...
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKST-QipQyL~eaG~~~------~g~I~~TQPRRVAavslA~RVAeE~~~~l 123 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKST-QIPQYLAEAGFAS------SGKIACTQPRRVAAVSLAKRVAEEMGCQL 123 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccc-cHhHHHHhccccc------CCcEEeecCchHHHHHHHHHHHHHhCCCc
Confidence 4455666778888889999999999999995 4444443322221 3346666699988888777655 444445
Q ss_pred CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc---CC
Q 019041 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI---RP 204 (347)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~---~~ 204 (347)
|-.+.+...-.... .....|.+.|.+.|++.+..... ++.+++||+||||.=.- ..+.+..+++.+ ++
T Consensus 124 G~~VGY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl--~TDiLlGlLKki~~~R~ 194 (674)
T KOG0922|consen 124 GEEVGYTIRFEDST------SKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSL--HTDILLGLLKKILKKRP 194 (674)
T ss_pred CceeeeEEEecccC------CCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhh--HHHHHHHHHHHHHhcCC
Confidence 54443332211111 11368999999999988766544 68899999999994100 223333333333 35
Q ss_pred CccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEe
Q 019041 205 DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFT 284 (347)
Q Consensus 205 ~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~ 284 (347)
+.++|.+|||+.. ..+..|+..-..+.+.-.. ..+... +.......+.......+.++-.. ++.+-+|||.
T Consensus 195 ~LklIimSATlda---~kfS~yF~~a~i~~i~GR~----fPVei~-y~~~p~~dYv~a~~~tv~~Ih~~-E~~GDILvFL 265 (674)
T KOG0922|consen 195 DLKLIIMSATLDA---EKFSEYFNNAPILTIPGRT----FPVEIL-YLKEPTADYVDAALITVIQIHLT-EPPGDILVFL 265 (674)
T ss_pred CceEEEEeeeecH---HHHHHHhcCCceEeecCCC----CceeEE-eccCCchhhHHHHHHHHHHHHcc-CCCCCEEEEe
Confidence 6789999999865 3445565553333332111 111111 12222233332233333333333 5677999999
Q ss_pred cCcccHHHHHHHHhhC----C--C--CceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 285 ETKKGCDQVTRQLRMD----G--W--PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 285 ~~~~~~~~~~~~L~~~----~--~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
...++.+.+++.|.+. + . -+..+||.++.+++.++++.-..|..+|+++|++++..+.||+|+
T Consensus 266 tGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 266 TGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceE
Confidence 9999999999988753 1 1 246789999999999998888889999999999999999999874
No 115
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.3e-17 Score=143.25 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=73.7
Q ss_pred HHHHHHH-hhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 266 RLIKLLK-EVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 266 ~l~~~~~-~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
.|+..+. ....+.++||-+-+++.|+.+.++|.+.|+++..+|++...-+|.++++..+.|..+|||+-+.+.+|+|+|
T Consensus 434 DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiP 513 (663)
T COG0556 434 DLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 513 (663)
T ss_pred HHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCc
Confidence 4444443 345578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 019041 345 TV 346 (347)
Q Consensus 345 ~v 346 (347)
.|
T Consensus 514 EV 515 (663)
T COG0556 514 EV 515 (663)
T ss_pred ce
Confidence 87
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=7.9e-18 Score=152.05 Aligned_cols=130 Identities=24% Similarity=0.203 Sum_probs=101.9
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|+ .|++.|.-..-.++.|+ +..+.||.|||+++.+++...... +..+.+++|+..||.+-.+++..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 455 78899998888888875 779999999999999888777665 6679999999999999999999999
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHH-HHHhcCC------CCCCcccEEEEecchhhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DMLEAQH------TNLRRVTYLVLDEADRML 187 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~~------~~~~~~~~iIvDE~h~~~ 187 (347)
..+|+.+..+.++.+..+....+ .++|+++|...+- ++++... .....+.+.||||++.++
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 99999999998876655444344 5899999987652 2332221 123468899999999643
No 117
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=1.3e-17 Score=158.28 Aligned_cols=281 Identities=21% Similarity=0.207 Sum_probs=169.7
Q ss_pred CCCCCCcHHHHhhHhhh----hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHH-HH
Q 019041 45 LGFVEPTPIQAQGWPMA----LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ-EE 119 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~----~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~-~~ 119 (347)
-|+ ++|+.|.++...+ .+++.+++.|+||+|||++|++|++... .+.+++|+|||++|++|+. +.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHH
Confidence 355 7999999966554 4468899999999999999999988753 1567999999999999994 66
Q ss_pred HHHhccCCCceEEEEECCCCCchh-----------------------------------------------h--------
Q 019041 120 ALKFGSRAGIRSTCIYGGAPKGPQ-----------------------------------------------I-------- 144 (347)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~-------- 144 (347)
+..+....++.+..+.|+.+.-.. +
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 666665566666655554421100 0
Q ss_pred ----------------HhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-----Ch-------HH--
Q 019041 145 ----------------RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----FE-------PQ-- 194 (347)
Q Consensus 145 ----------------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~~-------~~-- 194 (347)
+.-...++|+|++...|...+.... .+...+.+||||||++.+.. .. ..
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~ 470 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQ 470 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHH
Confidence 0111257899999998887664433 25679999999999875311 00 00
Q ss_pred -----------------------------------------HHH---H------------H---h--h------------
Q 019041 195 -----------------------------------------IRK---I------------V---T--Q------------ 201 (347)
Q Consensus 195 -----------------------------------------~~~---~------------~---~--~------------ 201 (347)
+.. . . . .
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~ 550 (820)
T PRK07246 471 KALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSE 550 (820)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 000 0 0 0 0
Q ss_pred -------------------cCCCccEEEEEeecc--hhHHHHHHHhcCCCeEEEecccccccccccceeEE-Eecc----
Q 019041 202 -------------------IRPDRQTLYWSATWP--REVETLARQFLRNPYKVIIGSLELKANQSINQVVE-VVTE---- 255 (347)
Q Consensus 202 -------------------~~~~~~~i~lsaT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---- 255 (347)
+.....++++|||+. +... + ...++.+........ ..........+. ....
T Consensus 551 ~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~-~~~lGl~~~~~~~~~-~~~~~~~~~~i~~~~p~~~~~ 627 (820)
T PRK07246 551 KRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-L-ADLLGFEEYLFHKIE-KDKKQDQLVVVDQDMPLVTET 627 (820)
T ss_pred cceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-H-HHHcCCCccceecCC-CChHHccEEEeCCCCCCCCCC
Confidence 001135688888875 2222 3 333332211111111 000111111110 0111
Q ss_pred -hhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019041 256 -AEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 334 (347)
Q Consensus 256 -~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 334 (347)
...+.......+..+. ..+++++|+++|.+..+.+++.|....+.+ ..-|... .+..++++|+.++..||++|
T Consensus 628 ~~~~~~~~~~~~i~~~~---~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 628 SDEVYAEEIAKRLEELK---QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGL 701 (820)
T ss_pred ChHHHHHHHHHHHHHHH---hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEec
Confidence 1111122222332322 246899999999999999999997654444 3344322 24668999999888999999
Q ss_pred cccccCCCCCc
Q 019041 335 DVAARGLGRIT 345 (347)
Q Consensus 335 ~~~~~Gidip~ 345 (347)
+.+-+|||+|+
T Consensus 702 ~sFwEGVD~p~ 712 (820)
T PRK07246 702 GSFWEGVDFVQ 712 (820)
T ss_pred chhhCCCCCCC
Confidence 99999999984
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.3e-17 Score=154.19 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=99.2
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|+ .+++.|.-.--.+..|+ +..+.||.|||+++.++++..... +..+.+++|+..||.+-.+++..+.
T Consensus 79 lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 454 67777776655555554 889999999999999888766665 6679999999999999999999999
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcCCC------CCCcccEEEEecchhhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQHT------NLRRVTYLVLDEADRML 187 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~~------~~~~~~~iIvDE~h~~~ 187 (347)
..+|+.+.++.++.+.......+ .++|+++|...+ +++++.... ....+.+.||||+|.++
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 99999999998776655444444 389999998776 233322211 23678999999999754
No 119
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.79 E-value=3e-17 Score=152.37 Aligned_cols=296 Identities=18% Similarity=0.176 Sum_probs=199.3
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHH
Q 019041 36 DYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (347)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 115 (347)
+...+.+....-...+..+..+++.+.+.+.+++.|.||.|||.-.-..++....... ...++++--|++--|..
T Consensus 160 ~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIs 234 (924)
T KOG0920|consen 160 ESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAIS 234 (924)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHH
Confidence 3333444444444668889999999999999999999999999765555666655543 24456666699888888
Q ss_pred HHHHHHH-hccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh-hhccCChH
Q 019041 116 IQEEALK-FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR-MLDMGFEP 193 (347)
Q Consensus 116 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~-~~~~~~~~ 193 (347)
+.+.+.+ .+...|-.+.+-.+..+... ....+.++|.+.+++.+.. ...+.+++.+|+||+|. -.+.+|..
T Consensus 235 vAeRVa~ER~~~~g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflL 307 (924)
T KOG0920|consen 235 VAERVAKERGESLGEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLL 307 (924)
T ss_pred HHHHHHHHhccccCCeeeEEEeeecccC------CceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHH
Confidence 8877663 33334433333333222211 1368999999999998877 44578899999999994 23344555
Q ss_pred HHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEeccccccccc---------------ccceeEEEecc---
Q 019041 194 QIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQ---------------SINQVVEVVTE--- 255 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~--- 255 (347)
.+.+.+-..+++.++|+||||+.. .....|++....+.+.-...+... ...........
T Consensus 308 i~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~ 384 (924)
T KOG0920|consen 308 ILLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLR 384 (924)
T ss_pred HHHHHHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccc
Confidence 555555555589999999999873 444555554444433322100000 00000000000
Q ss_pred -------hhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC-------CCCceeecCCCCHHHHHHHHH
Q 019041 256 -------AEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD-------GWPALSIHGDKNQSERDWVLA 321 (347)
Q Consensus 256 -------~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~ 321 (347)
....+...+..++..+.+....+.+|||.++.+....+++.|..+ ..-+..+|+.++..+++.+.+
T Consensus 385 ~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~ 464 (924)
T KOG0920|consen 385 LARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFK 464 (924)
T ss_pred cccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcC
Confidence 111334455566666666566789999999999999999999642 245677899999999999999
Q ss_pred HHhcCCCCEEEEecccccCCCCCcC
Q 019041 322 EFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 322 ~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
....|..+||++|++++.+|.||||
T Consensus 465 ~pp~g~RKIIlaTNIAETSITIdDV 489 (924)
T KOG0920|consen 465 RPPKGTRKIILATNIAETSITIDDV 489 (924)
T ss_pred CCCCCcchhhhhhhhHhhcccccCe
Confidence 9999999999999999999999997
No 120
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.79 E-value=1.2e-17 Score=148.91 Aligned_cols=279 Identities=22% Similarity=0.293 Sum_probs=176.5
Q ss_pred CCcHHHHhhHhhhhc----CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.+++||.+.++.+.. |-++|+...+|.|||+- .++.+..+..... .....||+||...| ..|..++++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~----~~GPfLVi~P~StL-~NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG----IPGPFLVIAPKSTL-DNWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC----CCCCeEEEeeHhhH-HHHHHHHHHhC
Confidence 689999999887543 66899999999999964 4444444443211 13456999998777 77899999996
Q ss_pred cCCCceEEEEECCCCCchhh-Hhh--cCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQI-RDL--RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (347)
+ ++++..++|+....... +.+ ....+|+|||++...+.-. .+.-.+|.++||||+|++-+.. ..+...++.
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~ 314 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKNEK--SKLSKILRE 314 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcchh--hHHHHHHHH
Confidence 6 56788888877544332 222 3368999999999876421 2223458999999999987743 334455666
Q ss_pred cCCCccEEEEEeecchh-HHHH----------------------------------------------------HHHhcC
Q 019041 202 IRPDRQTLYWSATWPRE-VETL----------------------------------------------------ARQFLR 228 (347)
Q Consensus 202 ~~~~~~~i~lsaT~~~~-~~~~----------------------------------------------------~~~~~~ 228 (347)
+. ....+++|+||-.. +..+ ++.-++
T Consensus 315 f~-~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FK-TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hc-ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 63 34467888884332 1110 000111
Q ss_pred CCeEEEeccc--c-------------------cc-------------cccccce--eEE-------------Eecchhcc
Q 019041 229 NPYKVIIGSL--E-------------------LK-------------ANQSINQ--VVE-------------VVTEAEKY 259 (347)
Q Consensus 229 ~~~~~~~~~~--~-------------------~~-------------~~~~~~~--~~~-------------~~~~~~~~ 259 (347)
+...+.+-.. . .. .+.-..+ .+. .+....+.
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 1111111000 0 00 0000000 000 00111111
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCC---EEEEecc
Q 019041 260 NSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP---IMTATDV 336 (347)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~ 336 (347)
.+...|+..+++ .|+++|||..-.....-+.++.--.++....+.|.++.++|...++.|+..... +|++|.+
T Consensus 474 --~vLDkLL~~Lk~--~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 474 --LVLDKLLPKLKE--QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred --ehHHHHHHHHHh--CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 122333333333 578999999988877778888877899999999999999999999999976533 8899999
Q ss_pred cccCCCCC
Q 019041 337 AARGLGRI 344 (347)
Q Consensus 337 ~~~Gidip 344 (347)
.+-|||+-
T Consensus 550 GGLGINL~ 557 (971)
T KOG0385|consen 550 GGLGINLT 557 (971)
T ss_pred cccccccc
Confidence 99999874
No 121
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=1.8e-16 Score=141.94 Aligned_cols=284 Identities=20% Similarity=0.214 Sum_probs=177.0
Q ss_pred CCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|.+||+..+..+. .+...|+...+|.|||+ -+++.+..+....+. ...+|||||. .++.||.+++..|+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTI-QiisFLaaL~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTI-QIISFLAALHHSGKL----TKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccch-hHHHHHHHHhhcccc----cCceEEEccH-HHHHHHHHHHHHhC
Confidence 57899999987764 35678999999999996 455555555554222 3579999995 67799999999984
Q ss_pred cCCCceEEEEECCCCCc------------h-hhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC
Q 019041 125 SRAGIRSTCIYGGAPKG------------P-QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (347)
. .+++..+++..... . ..+.......|+++|++.+.-. ...+.--.|+++|+||.|.+-++.
T Consensus 279 p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 279 P--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred c--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc-
Confidence 4 66777777766521 0 1122233578999998876542 222333468999999999987653
Q ss_pred hHHHHHHHhhcCCCccEEEEEeecchh-HHHHHHHh-cCCCeE------------EEeccc-------------------
Q 019041 192 EPQIRKIVTQIRPDRQTLYWSATWPRE-VETLARQF-LRNPYK------------VIIGSL------------------- 238 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~lsaT~~~~-~~~~~~~~-~~~~~~------------~~~~~~------------------- 238 (347)
..+...+..+ ...+.|++|+||-.. +..+...+ +..|.. ..+...
T Consensus 354 -s~islackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 -SKISLACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred -cHHHHHHHhc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 2334444444 355678888885432 11111000 000000 000000
Q ss_pred ---------------------------------------------------------cc---------ccccccceeEEE
Q 019041 239 ---------------------------------------------------------EL---------KANQSINQVVEV 252 (347)
Q Consensus 239 ---------------------------------------------------------~~---------~~~~~~~~~~~~ 252 (347)
.. ...-+....+..
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 00 000000000000
Q ss_pred e------cc---hhccccHHHHHHHHHHH-hhcCCCeEEEEecCcccHHHHHHHHh-hCCCCceeecCCCCHHHHHHHHH
Q 019041 253 V------TE---AEKYNSMFICRLIKLLK-EVMDGSRILIFTETKKGCDQVTRQLR-MDGWPALSIHGDKNQSERDWVLA 321 (347)
Q Consensus 253 ~------~~---~~~~~~~~~~~l~~~~~-~~~~~~~~lvf~~~~~~~~~~~~~L~-~~~~~~~~~~~~~~~~~r~~~~~ 321 (347)
. .. ......-....+..++. ....+.++|+|..++....-+...|. ..|+.+..+.|.++...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 0 00 00011113334444444 33457799999999999888888888 58999999999999999999999
Q ss_pred HHhcCCCC--EEEEecccccCCCCCc
Q 019041 322 EFRSGRSP--IMTATDVAARGLGRIT 345 (347)
Q Consensus 322 ~f~~g~~~--vlv~T~~~~~Gidip~ 345 (347)
+|+++..- +|++|.+.+-|+|+-.
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred hhcCCCceEEEEEEeccccccccccc
Confidence 99988654 7888899999998754
No 122
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=5.6e-16 Score=149.90 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=55.1
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCC--CceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMDGW--PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.++++||+++|.+..+.+++.|..... ...++.-+++...|..++++|+.++-.||++|+.+.+|||+|+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg 822 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPG 822 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCC
Confidence 457999999999999999999975432 1223332333345788999999988889999999999999997
No 123
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=3.5e-16 Score=137.48 Aligned_cols=278 Identities=17% Similarity=0.181 Sum_probs=179.1
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH-Hh
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KF 123 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~ 123 (347)
......+++-.+++.++.+.+..++.|.||||||. .+.-.+....-. .+++++=+--|++.-|..+...+. ++
T Consensus 261 RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT-QiPQyL~EaGyt-----k~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 261 RKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT-QIPQYLYEAGYT-----KGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred HhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc-cccHHHHhcccc-----cCCceEeecCcchHHHHHHHHHHHHHh
Confidence 34456677888889999999999999999999995 333333322211 125556666699988888776554 45
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh-hhccC-ChHHHHHHHhh
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR-MLDMG-FEPQIRKIVTQ 201 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~-~~~~~-~~~~~~~~~~~ 201 (347)
+..+|-++.+-..-... .....-+=++|.++|++-+.... ++..+++|||||||. .+.-+ ....+.. +.+
T Consensus 335 gvkLG~eVGYsIRFEdc------TSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKD-Iar 406 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDC------TSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKD-IAR 406 (902)
T ss_pred CcccccccceEEEeccc------cCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHH-HHh
Confidence 44454333222111100 01124577899999998776543 478899999999994 11111 1112222 344
Q ss_pred cCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHH--HhhcCCCe
Q 019041 202 IRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLL--KEVMDGSR 279 (347)
Q Consensus 202 ~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 279 (347)
++++.++++.|||+.. .....++.+...+.+... +..+...+....+.+... ..+...+ ....+.+-
T Consensus 407 ~RpdLKllIsSAT~DA---ekFS~fFDdapIF~iPGR----RyPVdi~Yt~~PEAdYld----Aai~tVlqIH~tqp~GD 475 (902)
T KOG0923|consen 407 FRPDLKLLISSATMDA---EKFSAFFDDAPIFRIPGR----RYPVDIFYTKAPEADYLD----AAIVTVLQIHLTQPLGD 475 (902)
T ss_pred hCCcceEEeeccccCH---HHHHHhccCCcEEeccCc----ccceeeecccCCchhHHH----HHHhhheeeEeccCCcc
Confidence 5688999999999865 334556666544444321 222333333333333222 1222222 22346689
Q ss_pred EEEEecCcccHHHHHHHHhh----C-----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 280 ILIFTETKKGCDQVTRQLRM----D-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 280 ~lvf~~~~~~~~~~~~~L~~----~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+|||....+..+...+.|+. . .+-+..+++.+|.+.+..+++.-..|-.+|++||++++..+.|++|+
T Consensus 476 ILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~ 552 (902)
T KOG0923|consen 476 ILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIK 552 (902)
T ss_pred EEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeE
Confidence 99999999988888777753 2 23466789999999999998888889999999999999999999874
No 124
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.73 E-value=4.6e-15 Score=135.24 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcC----CCCEEEEecccccC
Q 019041 265 CRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG----RSPIMTATDVAARG 340 (347)
Q Consensus 265 ~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~G 340 (347)
..+..++.. .+++++|.+.|.+.++.+++.|...-.-...+.|+.+ .+..++++|++. .-.||++|+.+-+|
T Consensus 460 ~~~~~~~~~--~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 460 LSTAAILRK--AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHH--cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 344444444 5779999999999999999999653223344456443 356678889874 67899999999999
Q ss_pred CCC
Q 019041 341 LGR 343 (347)
Q Consensus 341 idi 343 (347)
||+
T Consensus 536 vDv 538 (636)
T TIGR03117 536 IDL 538 (636)
T ss_pred ccc
Confidence 999
No 125
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.4e-15 Score=140.14 Aligned_cols=130 Identities=26% Similarity=0.305 Sum_probs=97.7
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|+ .|++.|.-.--.+..|+ +..+.||.|||+++.+|+...... |..+-|++++..||..-.+++..+-
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 455 67777776666666564 899999999999998887765554 6679999999999999999999998
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-----HHHHhcC--CCCCCcccEEEEecchhhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-----IDMLEAQ--HTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-----~~~~~~~--~~~~~~~~~iIvDE~h~~~ 187 (347)
..+|+.+.++.++......... -.++|+++|...| .+.+... ......+.+.||||++.++
T Consensus 151 ~~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 8999999988776655444333 3689999998776 3332211 1224568899999999653
No 126
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.73 E-value=6.9e-16 Score=142.34 Aligned_cols=129 Identities=26% Similarity=0.289 Sum_probs=96.3
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|+ .|++.|.-..-.+.+| -+..+.||.|||+++.+|+.-.... +..+.|++++..||.+-.+++..+-
T Consensus 73 lG~-r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 465 5778887766555544 5899999999999998887544443 5668999999999999999999998
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHH-HHHhcCCC------CCCcccEEEEecchhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DMLEAQHT------NLRRVTYLVLDEADRM 186 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~~~------~~~~~~~iIvDE~h~~ 186 (347)
..+|+.+.++.++.+.......+ .++|+++|...+- ++++.... ....+.+.||||++.+
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 89999999887776665544444 4799999986542 33322211 2356889999999964
No 127
>COG4889 Predicted helicase [General function prediction only]
Probab=99.72 E-value=2.2e-17 Score=149.11 Aligned_cols=299 Identities=18% Similarity=0.180 Sum_probs=166.3
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHhhhhcC----CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 37 YCLEVIAKLGFVEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 37 ~~~~~l~~~~~~~~~~~Q~~~i~~~~~~----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
++..++.-..-..|||+|+.+++...++ .+.=+.+++|+|||++.+-.+- .+. ..++|+|+|+.+|
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisE-ala---------~~~iL~LvPSIsL 218 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISE-ALA---------AARILFLVPSISL 218 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHH-HHh---------hhheEeecchHHH
Confidence 5555666556678999999999987664 5677889999999998764333 222 3579999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEECCCCCc---hhh----------------------HhhcCCCcEEEeChHHHHHHHhc
Q 019041 113 AVQIQEEALKFGSRAGIRSTCIYGGAPKG---PQI----------------------RDLRRGVEIVIATPGRLIDMLEA 167 (347)
Q Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----------------------~~~~~~~~iiv~T~~~l~~~~~~ 167 (347)
..|..+++..- ...+++...+..+.... +.+ +.-..+--|+++|++++...-..
T Consensus 219 LsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA 297 (1518)
T COG4889 219 LSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA 297 (1518)
T ss_pred HHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH
Confidence 99987777643 12344433333322111 000 11122446999999999887766
Q ss_pred CCCCCCcccEEEEecchhhhccCChHHHHHHHhhc-----CCCccEEEEEeecchhHHHHHHHhcCC-------------
Q 019041 168 QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-----RPDRQTLYWSATWPREVETLARQFLRN------------- 229 (347)
Q Consensus 168 ~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-----~~~~~~i~lsaT~~~~~~~~~~~~~~~------------- 229 (347)
....+..+++||+||||+.........=...+.+. -+..+.+.|||||.-.-+.....--..
T Consensus 298 Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~f 377 (1518)
T COG4889 298 QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTF 377 (1518)
T ss_pred HHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhh
Confidence 66667889999999999864332111111111111 023467899999643211111110000
Q ss_pred -CeEEEeccccccccccc---ceeEEEecc--------------hhccccHHHHHHHHH----HHhhc------------
Q 019041 230 -PYKVIIGSLELKANQSI---NQVVEVVTE--------------AEKYNSMFICRLIKL----LKEVM------------ 275 (347)
Q Consensus 230 -~~~~~~~~~~~~~~~~~---~~~~~~~~~--------------~~~~~~~~~~~l~~~----~~~~~------------ 275 (347)
+........+....... ...+..++. ...........+... .+...
T Consensus 378 Geef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ 457 (1518)
T COG4889 378 GEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADT 457 (1518)
T ss_pred chhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCc
Confidence 00000000000000000 000000000 000000011111111 11110
Q ss_pred -CCCeEEEEecCcccHHHHHHHHhh-------------CC--CCceeecCCCCHHHHHHHHH---HHhcCCCCEEEEecc
Q 019041 276 -DGSRILIFTETKKGCDQVTRQLRM-------------DG--WPALSIHGDKNQSERDWVLA---EFRSGRSPIMTATDV 336 (347)
Q Consensus 276 -~~~~~lvf~~~~~~~~~~~~~L~~-------------~~--~~~~~~~~~~~~~~r~~~~~---~f~~g~~~vlv~T~~ 336 (347)
+..+.+-||.++++..++++.+.. .+ +.+-.+.|.|+..+|.+.+. .|...+.+||-...+
T Consensus 458 ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRc 537 (1518)
T COG4889 458 APMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARC 537 (1518)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchh
Confidence 112678999999998888766542 12 33456779999998855443 234567889999999
Q ss_pred cccCCCCCcC
Q 019041 337 AARGLGRITV 346 (347)
Q Consensus 337 ~~~Gidip~v 346 (347)
+++|+|+|.+
T Consensus 538 LSEGVDVPaL 547 (1518)
T COG4889 538 LSEGVDVPAL 547 (1518)
T ss_pred hhcCCCcccc
Confidence 9999999986
No 128
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.71 E-value=1.1e-16 Score=149.31 Aligned_cols=303 Identities=19% Similarity=0.192 Sum_probs=190.6
Q ss_pred CCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccC
Q 019041 22 VPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQ 97 (347)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~ 97 (347)
...+...|.++...|....+ .++|.||.+.++.++ .+.++|+...+|.|||+- -+..+..+......
T Consensus 349 ~~~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~-- 419 (1373)
T KOG0384|consen 349 YRPQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQI-- 419 (1373)
T ss_pred cCccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhhc--
Confidence 33445557777766666554 689999999887754 578999999999999963 33444444443322
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhc----C-----CCcEEEeChHHHHHHHhcC
Q 019041 98 GEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR----R-----GVEIVIATPGRLIDMLEAQ 168 (347)
Q Consensus 98 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~iiv~T~~~l~~~~~~~ 168 (347)
-...||++|...+ ..|.+++..|. ++++++.+|.....+.++.+. . .++++++|++.++..-..
T Consensus 420 --~gpflvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~- 492 (1373)
T KOG0384|consen 420 --HGPFLVVVPLSTI-TAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE- 492 (1373)
T ss_pred --cCCeEEEeehhhh-HHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh-
Confidence 2236888998666 55777887774 788999999988877776552 1 378999999998754321
Q ss_pred CCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecch-hHHHHHHHh-cCCCeEEE------------
Q 019041 169 HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR-EVETLARQF-LRNPYKVI------------ 234 (347)
Q Consensus 169 ~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~-~~~~~~~~~-~~~~~~~~------------ 234 (347)
+.--.+.++++||||++.+.. ..+...+..+. ....+++|+||-. .+..+...+ +..|..+.
T Consensus 493 -L~~i~w~~~~vDeahrLkN~~--~~l~~~l~~f~-~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~ 568 (1373)
T KOG0384|consen 493 -LSKIPWRYLLVDEAHRLKNDE--SKLYESLNQFK-MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEE 568 (1373)
T ss_pred -hccCCcceeeecHHhhcCchH--HHHHHHHHHhc-ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcch
Confidence 112247899999999987643 22223344443 3346777888544 222222111 01111110
Q ss_pred ----------------------------------ecccccc-----------------------------------cccc
Q 019041 235 ----------------------------------IGSLELK-----------------------------------ANQS 245 (347)
Q Consensus 235 ----------------------------------~~~~~~~-----------------------------------~~~~ 245 (347)
+...+.. ...-
T Consensus 569 ~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKc 648 (1373)
T KOG0384|consen 569 TEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKC 648 (1373)
T ss_pred hHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHh
Confidence 0000000 0000
Q ss_pred cceeEEEecchhccccHHH-----HH-------------HHHHHHh-hcCCCeEEEEecCcccHHHHHHHHhhCCCCcee
Q 019041 246 INQVVEVVTEAEKYNSMFI-----CR-------------LIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWPALS 306 (347)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~-----~~-------------l~~~~~~-~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~ 306 (347)
..+.+.+..........+. .. |-.++.. ...|+++|||..-+....-++++|...+++.-.
T Consensus 649 cNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQR 728 (1373)
T KOG0384|consen 649 CNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQR 728 (1373)
T ss_pred cCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCccee
Confidence 0111111111111111110 01 1122222 225689999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCC---CCEEEEecccccCCCCC
Q 019041 307 IHGDKNQSERDWVLAEFRSGR---SPIMTATDVAARGLGRI 344 (347)
Q Consensus 307 ~~~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~Gidip 344 (347)
+.|.++.+-|++++..|++-. ..+|+||.+.+-|||+-
T Consensus 729 LDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLa 769 (1373)
T KOG0384|consen 729 LDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLA 769 (1373)
T ss_pred ccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccc
Confidence 999999999999999998754 45999999999999974
No 129
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.68 E-value=9.3e-15 Score=133.76 Aligned_cols=160 Identities=21% Similarity=0.194 Sum_probs=109.7
Q ss_pred CCcHHHHhhHhhhhc---C-------CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALK---G-------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~---~-------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 118 (347)
.++|+|++.+.-+.+ | ..+++.-.+|+|||+..+..+...+.+.+.... --.+.||++|. .|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~-~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP-LINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc-cccccEEEccH-HHHHHHHH
Confidence 689999999987643 1 347888899999998766666666666653211 12679999995 77799999
Q ss_pred HHHHhccCCCceEEEEECCCCC-chhhH------hhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC
Q 019041 119 EALKFGSRAGIRSTCIYGGAPK-GPQIR------DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (347)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (347)
+|.+|.....+....+++.... +.... .......|.+.+++.+.+..+. +....++++|+||.|.+-+.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--
Confidence 9999866556677777777664 11111 1112467889999999766553 23457899999999987553
Q ss_pred hHHHHHHHhhcCCCccEEEEEeec
Q 019041 192 EPQIRKIVTQIRPDRQTLYWSATW 215 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~lsaT~ 215 (347)
...+...+..+ ...+.+++|+||
T Consensus 392 ~s~~~kaL~~l-~t~rRVLLSGTp 414 (776)
T KOG0390|consen 392 DSLTLKALSSL-KTPRRVLLTGTP 414 (776)
T ss_pred hhHHHHHHHhc-CCCceEEeeCCc
Confidence 23344444444 355678889984
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=7.7e-15 Score=134.91 Aligned_cols=130 Identities=23% Similarity=0.286 Sum_probs=97.1
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|+ .|++.|.-.--.+..|+ +..+.||-|||+++.+|+.-.... |..+-|++.+..||..-.+++..+-
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHH
Confidence 455 77888877766666664 799999999999988877655444 5668899999999999999999988
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcCCC------CCCcccEEEEecchhhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQHT------NLRRVTYLVLDEADRML 187 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~~------~~~~~~~iIvDE~h~~~ 187 (347)
..+|+.+.+...+.........+ .++|+++|...| +++++.... ....+.+.||||++.++
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 88999998887765555444444 489999998765 334432211 23567899999999643
No 131
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.67 E-value=6.8e-15 Score=125.46 Aligned_cols=281 Identities=13% Similarity=0.143 Sum_probs=171.3
Q ss_pred CCCCcHHHHhhHhh-hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 47 FVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 47 ~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
++.+.|+|++.+.. +.+|.++++...+|.|||+-++..+..... ....||+||. .+-..|.+.+.+|..
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra---------EwplliVcPA-svrftWa~al~r~lp 265 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA---------EWPLLIVCPA-SVRFTWAKALNRFLP 265 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh---------cCcEEEEecH-HHhHHHHHHHHHhcc
Confidence 34678999999875 556789999999999999866544333323 3348999996 555788999998866
Q ss_pred CCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCC
Q 019041 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD 205 (347)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~ 205 (347)
..- .+....++...... +-....|.|.+++.+...-... ....+.++|+||+|++-+.. ....+.++..+...
T Consensus 266 s~~-pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~l--~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 266 SIH-PIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDIL--KKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVA 338 (689)
T ss_pred ccc-ceEEEecccCCccc---cccCCeEEEEEHHHHHHHHHHH--hcccceEEEEechhhhhccc-hhhhhhhhhHHHHh
Confidence 432 24444443322211 2224679999999887654322 23458899999999876543 22355555555556
Q ss_pred ccEEEEEeecchh-------------------HHHHHHHhcCCCeEEE-ecccc-------------------------c
Q 019041 206 RQTLYWSATWPRE-------------------VETLARQFLRNPYKVI-IGSLE-------------------------L 240 (347)
Q Consensus 206 ~~~i~lsaT~~~~-------------------~~~~~~~~~~~~~~~~-~~~~~-------------------------~ 240 (347)
.++|++|+||.-+ ...+..+|+.-...-. ..... .
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999995321 1223333332211100 00000 0
Q ss_pred ccccccceeEEEecchh---------------------cccc-----------HHHHHHHHHHHh-----hcCCCeEEEE
Q 019041 241 KANQSINQVVEVVTEAE---------------------KYNS-----------MFICRLIKLLKE-----VMDGSRILIF 283 (347)
Q Consensus 241 ~~~~~~~~~~~~~~~~~---------------------~~~~-----------~~~~~l~~~~~~-----~~~~~~~lvf 283 (347)
..++.....+....... +... ..+..+.+.+.. -.++.|.+||
T Consensus 419 qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 419 QLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred hCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 00111111111111000 0000 001112222222 1245699999
Q ss_pred ecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCC-CCE-EEEecccccCCCCC
Q 019041 284 TETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR-SPI-MTATDVAARGLGRI 344 (347)
Q Consensus 284 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~v-lv~T~~~~~Gidip 344 (347)
|........+...+.+.++....+.|.++..+|+...+.|+.++ ..| +++..++++|+++.
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~t 561 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLT 561 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeee
Confidence 99999999999999999999999999999999999999998754 443 34447888898864
No 132
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.67 E-value=1.2e-14 Score=134.46 Aligned_cols=82 Identities=23% Similarity=0.337 Sum_probs=73.6
Q ss_pred HHHHHHH-hhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 266 RLIKLLK-EVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 266 ~l~~~~~-~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
.+.+.+. ....+.++||||++++.++.+++.|.+.|+++..+|++++..+|..+++.|+.|+.+|+|||+.+++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 3444333 345678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 019041 345 TVC 347 (347)
Q Consensus 345 ~v~ 347 (347)
+++
T Consensus 510 ~v~ 512 (655)
T TIGR00631 510 EVS 512 (655)
T ss_pred CCc
Confidence 974
No 133
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=7.3e-15 Score=136.94 Aligned_cols=127 Identities=24% Similarity=0.260 Sum_probs=92.2
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.+++.|.-.--.+.+|+ +..+.||-|||+++.+|+.-.... |.-+-|++.+.-||..-.+++..+-..+|
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~--------G~gVHvVTvNDYLA~RDaewm~p~y~flG 207 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALT--------GRGVHVVTVNDYLAQRDKEWMNPVFEFHG 207 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHc--------CCCcEEEeechHhhhhhHHHHHHHHHHhC
Confidence 46666665555555565 889999999999999887666555 55588899999999999999998888899
Q ss_pred ceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcCC------CCCCcccEEEEecchhhh
Q 019041 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRML 187 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~ 187 (347)
+.+.++..+.+...... .-.++|+++|...| +++++.+- .-...+.+.||||++.++
T Consensus 208 LtVg~i~~~~~~~~Rr~--aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 208 LSVGVILNTMRPEERRE--QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CeeeeeCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 99998866555544433 33689999997655 23332221 123567899999999643
No 134
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=1.5e-14 Score=127.93 Aligned_cols=272 Identities=17% Similarity=0.195 Sum_probs=166.5
Q ss_pred CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH-Hhcc
Q 019041 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGS 125 (347)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~ 125 (347)
+.....++.+++..+.+++-+++.+.||||||.- +.-.+ .+..-. ++..+-+--|++.-|..+.+.+. +++.
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ-l~QyL---~edGY~---~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ-LAQYL---YEDGYA---DNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh-hHHHH---Hhcccc---cCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 4456778888888888999999999999999963 32222 221111 12334444499988888887665 4433
Q ss_pred CCCceEEEEE--CCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhh-hccCC-hHHHHHHHhh
Q 019041 126 RAGIRSTCIY--GGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM-LDMGF-EPQIRKIVTQ 201 (347)
Q Consensus 126 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~-~~~~~-~~~~~~~~~~ 201 (347)
.+|..+.+.. .+... ....|=+.|.+.|++-.... ..+.++++||+||||.= ++.+. .-.++.+++.
T Consensus 427 ~lG~~VGYsIRFEdvT~--------~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar 497 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTS--------EDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR 497 (1042)
T ss_pred ccccccceEEEeeecCC--------CceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh
Confidence 4443332221 11111 12568888988887654332 24678999999999942 22111 1122222222
Q ss_pred cCCCccEEEEEeecchhHHHHHHHhcC-CCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHH--hhcCCC
Q 019041 202 IRPDRQTLYWSATWPREVETLARQFLR-NPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLK--EVMDGS 278 (347)
Q Consensus 202 ~~~~~~~i~lsaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ 278 (347)
+.+.++|.+|||+.. .....+++ .|...+-... ..+...+ .....+ .+....+.+.+. ...+.+
T Consensus 498 -RrdlKliVtSATm~a---~kf~nfFgn~p~f~IpGRT-----yPV~~~~-~k~p~e---DYVeaavkq~v~Ihl~~~~G 564 (1042)
T KOG0924|consen 498 -RRDLKLIVTSATMDA---QKFSNFFGNCPQFTIPGRT-----YPVEIMY-TKTPVE---DYVEAAVKQAVQIHLSGPPG 564 (1042)
T ss_pred -hccceEEEeeccccH---HHHHHHhCCCceeeecCCc-----cceEEEe-ccCchH---HHHHHHHhhheEeeccCCCC
Confidence 357789999999865 33445555 4443322211 1111111 111111 222223333322 222446
Q ss_pred eEEEEecCcccHHHHHHHHhh----------CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 279 RILIFTETKKGCDQVTRQLRM----------DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 279 ~~lvf~~~~~~~~~~~~~L~~----------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+|||....+..+.....++. .+..+..+++.+|..-+..+++.-..|-.++||||++++..+.+|++.
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~ 643 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIR 643 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceE
Confidence 899999998887766655542 256788899999999988888888888899999999999999999873
No 135
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.65 E-value=2.7e-15 Score=134.47 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=106.8
Q ss_pred CCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
+|.+||.-.++.+. .+-+.|+...+|.|||. -+++.++.+.+... .|++ ||+||+..| +.|..++.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTi-QvIaFlayLkq~g~----~gpH-LVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTI-QVIAFLAYLKQIGN----PGPH-LVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchh-HHHHHHHHHHHcCC----CCCc-EEEecchhH-HHHHHHHHHhC
Confidence 58899999888643 34578999999999995 45566666655432 2444 888999877 78899999997
Q ss_pred cCCCceEEEEECCCCCchhhHhhc----CCCcEEEeChHHHHHHH-hcCCCCCCcccEEEEecchhhhccCChHHHHHHH
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLR----RGVEIVIATPGRLIDML-EAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 199 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~~-~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~ 199 (347)
+. +.+...+|...+...++... ..++|+++||+.+..-- .+..+.-.+++++|+||.|.+-+.. ...+..++
T Consensus 472 Ps--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM 548 (941)
T KOG0389|consen 472 PS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM 548 (941)
T ss_pred Cc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc
Confidence 74 56777888776666655442 25899999997664221 1111223568899999999876543 22333333
Q ss_pred hhcCCCccEEEEEeecc
Q 019041 200 TQIRPDRQTLYWSATWP 216 (347)
Q Consensus 200 ~~~~~~~~~i~lsaT~~ 216 (347)
.. +..+.+++|+||-
T Consensus 549 ~I--~An~RlLLTGTPL 563 (941)
T KOG0389|consen 549 SI--NANFRLLLTGTPL 563 (941)
T ss_pred cc--cccceEEeeCCcc
Confidence 32 3567788898843
No 136
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.61 E-value=4.1e-14 Score=132.28 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=106.3
Q ss_pred CCcHHHHhhHhhh--hc--CCcEEEEcCCCCchhHHhHHHHHHhhhcCC-CccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 49 EPTPIQAQGWPMA--LK--GRDLIGIAETGSGKTLSYLLPAFVHVSAQP-RLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 49 ~~~~~Q~~~i~~~--~~--~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.+|.||++.++.+ ++ +-+.|+|..+|.|||+-.+..+..-..+.+ ....-.....||+||+ .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 5799999998763 43 358899999999999865544433333221 1111112347999996 7788899999998
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcC
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (347)
.+. +.+....|........+.-.+..+|+|++|+.+...... +.-..|.+.|+||-|.+-+. ...+....+.+
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL- 1126 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL- 1126 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHH-
Confidence 776 456666666666666666666789999999998754321 11235779999999976553 22333334444
Q ss_pred CCccEEEEEeecc
Q 019041 204 PDRQTLYWSATWP 216 (347)
Q Consensus 204 ~~~~~i~lsaT~~ 216 (347)
...+.+.+|+||-
T Consensus 1127 ~a~hRLILSGTPI 1139 (1549)
T KOG0392|consen 1127 RANHRLILSGTPI 1139 (1549)
T ss_pred hhcceEEeeCCCc
Confidence 2345788899853
No 137
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.60 E-value=1.7e-12 Score=122.10 Aligned_cols=65 Identities=35% Similarity=0.370 Sum_probs=53.6
Q ss_pred CCCCCcHHHHhhHhhhh---cC------CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHH
Q 019041 46 GFVEPTPIQAQGWPMAL---KG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (347)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~---~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 116 (347)
|| ++|+.|.++...+. .+ +..++.||||+|||++|++|++...... +.+++|-|+|.+|-+|+
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~-------~k~vVIST~T~~LQeQL 94 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE-------KKKLVISTATVALQEQL 94 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc-------CCeEEEEcCCHHHHHHH
Confidence 45 89999999776654 22 6788999999999999999998766643 66899999999999998
Q ss_pred HH
Q 019041 117 QE 118 (347)
Q Consensus 117 ~~ 118 (347)
.+
T Consensus 95 ~~ 96 (697)
T PRK11747 95 VS 96 (697)
T ss_pred Hh
Confidence 53
No 138
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.60 E-value=6.4e-15 Score=106.77 Aligned_cols=137 Identities=20% Similarity=0.145 Sum_probs=82.4
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCc
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
.+|+-.++...+|+|||.-.+.-++...... +.++|||.|++.+++...+.++. .++++.....+.
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~~--- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARMR--- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS----
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhc----CCcccCceeeec---
Confidence 4566678999999999986665555544442 77899999999999887777754 343332111110
Q ss_pred hhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC--ChHHHHHHHhhcCCCccEEEEEeecchhH
Q 019041 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG--FEPQIRKIVTQIRPDRQTLYWSATWPREV 219 (347)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lsaT~~~~~ 219 (347)
....+.-|-++|+.++..++.. .....++++||+||||-..... +...+... .. .....++++||||+...
T Consensus 68 ----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 ----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT--
T ss_pred ----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCC
Confidence 1223467889999998887765 5557899999999999654332 11112221 22 13467999999998654
No 139
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.60 E-value=1.2e-14 Score=133.01 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=114.2
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc-cCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG-SRA 127 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~-~~~ 127 (347)
.|-.+|++..+..=.+++.++.|||.+|||++-...+-..+... +...++++.|+.+|+.|....+...- ...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes------D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES------DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc------CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 57789999999988899999999999999986665555554443 26789999999999999887776421 111
Q ss_pred CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhc---CCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCC
Q 019041 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA---QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (347)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~---~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (347)
-.+...+.|.-+.+..+. .-.+.|+|+-|+-+-..+.. ..-.+..+.++|+||+|.+-+..-+..+..++...
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 112222333222222111 11489999999999888766 33456789999999999887766666666666554
Q ss_pred CccEEEEEeecchh
Q 019041 205 DRQTLYWSATWPRE 218 (347)
Q Consensus 205 ~~~~i~lsaT~~~~ 218 (347)
.|..+++|||....
T Consensus 661 ~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 661 PCPFLVLSATIGNP 674 (1330)
T ss_pred CCCeeEEecccCCH
Confidence 58899999996543
No 140
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=2.4e-13 Score=128.60 Aligned_cols=74 Identities=35% Similarity=0.449 Sum_probs=60.5
Q ss_pred HHHCCCCCCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHH
Q 019041 42 IAKLGFVEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (347)
Q Consensus 42 l~~~~~~~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 117 (347)
...+....+|+.|.+++..+. .++..++.||||+|||++++.+++...... +.++++.+++..+.+|..
T Consensus 8 ~~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-------~~~viist~t~~lq~q~~ 80 (654)
T COG1199 8 AVAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE-------GKKVIISTRTKALQEQLL 80 (654)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc-------CCcEEEECCCHHHHHHHH
Confidence 344556699999999987654 356699999999999999999999886653 467999999999999988
Q ss_pred HHHHH
Q 019041 118 EEALK 122 (347)
Q Consensus 118 ~~~~~ 122 (347)
+....
T Consensus 81 ~~~~~ 85 (654)
T COG1199 81 EEDLP 85 (654)
T ss_pred Hhhcc
Confidence 87554
No 141
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.58 E-value=1.9e-13 Score=125.08 Aligned_cols=258 Identities=17% Similarity=0.145 Sum_probs=160.8
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (347)
..-.++.+|+|||||.+. +..+.....+ ...++|+++.+++|+.++...++..+.. ++. .+.+......
T Consensus 49 ~~V~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~~i 117 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDYII 117 (824)
T ss_pred CCeEEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccccc
Confidence 345689999999999754 3334333221 1568999999999999999999864221 211 1111111111
Q ss_pred hHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHH-------HHHhhcCCCccEEEEEeecc
Q 019041 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIR-------KIVTQIRPDRQTLYWSATWP 216 (347)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~-------~~~~~~~~~~~~i~lsaT~~ 216 (347)
-....+-+++..+++.+.... .+.++|+||+||+-.....-+...++ .+...+.....+|++-|+++
T Consensus 118 ---~~~~~~rLivqIdSL~R~~~~---~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 118 ---DGRPYDRLIVQIDSLHRLDGS---LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred ---cccccCeEEEEehhhhhcccc---cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 001357788888888776422 35679999999999776543333222 23344456778999999999
Q ss_pred hhHHHHHHHhcCCCeEEEecccccccccccceeEEEecch-------------------------------hccccHHHH
Q 019041 217 REVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEA-------------------------------EKYNSMFIC 265 (347)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~ 265 (347)
....++++...+......+...-........... ..... .........
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 270 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCT-FLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETT 270 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEE-EecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhh
Confidence 9999999987665443333222111000000000 00000 000000011
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
-.-.+......|+++-||+++...++.+++.....+..+.+++++.+..+. +.| ++.+|++-|+++..|+++-+
T Consensus 271 F~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 271 FFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccch
Confidence 222344455568899999999999999999999888899999887776633 222 57899999999999998754
No 142
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=6.8e-13 Score=125.74 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=63.5
Q ss_pred HCCCCCCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHH
Q 019041 44 KLGFVEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 119 (347)
.+.|..++|.|.+.+..+. +++++++.+|||+|||++.+.+++++....+. ..++++.+.|..-..|..++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~-----~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPE-----VRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccc-----cccEEEEcccchHHHHHHHH
Confidence 3678778999999887654 57899999999999999999999988765431 46899999999999999999
Q ss_pred HHHh
Q 019041 120 ALKF 123 (347)
Q Consensus 120 ~~~~ 123 (347)
+++.
T Consensus 80 lk~~ 83 (705)
T TIGR00604 80 LRKL 83 (705)
T ss_pred HHhh
Confidence 9884
No 143
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.5e-13 Score=123.72 Aligned_cols=223 Identities=17% Similarity=0.184 Sum_probs=123.7
Q ss_pred HhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH-HhccCCCceEE-
Q 019041 55 AQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGIRST- 132 (347)
Q Consensus 55 ~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~~- 132 (347)
++++++|-++.-++|||.||||||. .+.-.+....-....... +.-+=|--|++.-+..+.+... +++. .+-++.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT-QvPQFLYEAGf~s~~~~~-~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsY 338 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT-QVPQFLYEAGFASEQSSS-PGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSY 338 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc-cchHHHHHcccCCccCCC-CCeeeecCchHHHHHHHHHHHHHHhcc-CccceeE
Confidence 4566677778889999999999995 333333332222111111 2234445588877776666554 3333 332332
Q ss_pred -EEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHh-------hcC-
Q 019041 133 -CIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVT-------QIR- 203 (347)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~-------~~~- 203 (347)
.-+.+.-. ....|-++|.+.|++-+.+.. .+..++.||+||||.=.- +.+.+..++. +..
T Consensus 339 qIRfd~ti~--------e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 339 QIRFDGTIG--------EDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred EEEeccccC--------CCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHhh
Confidence 22332211 236899999999999887644 478899999999995211 1222222222 111
Q ss_pred -----CCccEEEEEeecchhHHHHHHHhcCCCe-EEEecccccccccccceeEEEecchhccccHHHHHHHHH--HHhhc
Q 019041 204 -----PDRQTLYWSATWPREVETLARQFLRNPY-KVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKL--LKEVM 275 (347)
Q Consensus 204 -----~~~~~i~lsaT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 275 (347)
...++|+||||+.-....-.+.+++.+. .+.+.... ..+...+...... .+........ +.+..
T Consensus 408 e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ----fPVsIHF~krT~~----DYi~eAfrKtc~IH~kL 479 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ----FPVSIHFNKRTPD----DYIAEAFRKTCKIHKKL 479 (1172)
T ss_pred hhcccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc----CceEEEeccCCCc----hHHHHHHHHHHHHhhcC
Confidence 2457999999986543332333444322 22222111 1112222222222 2222222222 23445
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRM 299 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~ 299 (347)
+.+.+|||+.......++.+.|++
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK 503 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRK 503 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHh
Confidence 778999999999999999988875
No 144
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.55 E-value=6.7e-14 Score=120.08 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=86.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (347)
.+.++++..+|+|||+.++..+.......+.. ....+||+||. .+..||..++.++......++....+.......
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~---~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALISYLKNEFPQR---GEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRL 100 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHHHHHHCCTTS---S-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHT
T ss_pred CCCEEEEECCCCCchhhhhhhhhhhhhccccc---cccceeEeecc-chhhhhhhhhccccccccccccccccccccccc
Confidence 35789999999999987665544222222110 12259999999 888999999999976556677776666512222
Q ss_pred hHhhcCCCcEEEeChHHHHHHHhcC---CCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecch
Q 019041 144 IRDLRRGVEIVIATPGRLIDMLEAQ---HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
........+++++|++.+....... .+..-++++||+||+|.+-+. .......+..+. ...++++||||..
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccccccc-cceEEeecccccc
Confidence 2233346899999999998111000 111134899999999988432 223333444453 6678999999754
No 145
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.53 E-value=2.9e-12 Score=119.69 Aligned_cols=74 Identities=26% Similarity=0.367 Sum_probs=70.2
Q ss_pred hcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 274 VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 274 ~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
...+.+++|||++.+.++.+++.|.+.|+++..+|++++..+|..+++.|+.|+..|+|||+.+++|+|+|+++
T Consensus 443 ~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~ 516 (652)
T PRK05298 443 VAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVS 516 (652)
T ss_pred HhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCc
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999974
No 146
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.53 E-value=7.3e-13 Score=113.08 Aligned_cols=294 Identities=15% Similarity=0.189 Sum_probs=172.3
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEE
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (347)
..+++|...+.++..-+.|+..--...+.++.+-++.+..++-+++.|.||+|||.-.--..+...... ...+
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v 94 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGV 94 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccce
Confidence 347779999999999999998776677777778888888899999999999999964333333333322 1224
Q ss_pred EEEcCcHHHHHHHHHHHHH-hccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEec
Q 019041 104 LVLAPTRELAVQIQEEALK-FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (347)
Q Consensus 104 lil~p~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (347)
..--|++.-+.++...... +--.+|-++.....-..-... ..-+=++|.++|++-.-... .+..+++||+||
T Consensus 95 ~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~------~T~Lky~tDgmLlrEams~p-~l~~y~viiLDe 167 (699)
T KOG0925|consen 95 ACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSP------NTLLKYCTDGMLLREAMSDP-LLGRYGVIILDE 167 (699)
T ss_pred eecCchHHHHHHHHHHHHHHhccccchhccccccccccCCh------hHHHHHhcchHHHHHHhhCc-ccccccEEEech
Confidence 4455888888887766543 211223222221111100000 01122445555555444433 367899999999
Q ss_pred chhh-hccC-ChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccc
Q 019041 183 ADRM-LDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (347)
Q Consensus 183 ~h~~-~~~~-~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (347)
+|.= +..+ ....++.+... +++.+++.+|||+.. .....|++++..+.+... ... +.++.-.....+.
T Consensus 168 ahERtlATDiLmGllk~v~~~-rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~-----~Pv-Ei~Yt~e~erDyl 237 (699)
T KOG0925|consen 168 AHERTLATDILMGLLKEVVRN-RPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGT-----HPV-EIFYTPEPERDYL 237 (699)
T ss_pred hhhhhHHHHHHHHHHHHHHhh-CCCceEEEeecccch---HHHHHHhCCCCeeecCCC-----Cce-EEEecCCCChhHH
Confidence 9941 1111 12223333332 368899999999754 445667776655554321 111 2222222222222
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC---------CCCceeecCCCCHHHHHHHHHHHhc---C--
Q 019041 261 SMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD---------GWPALSIHGDKNQSERDWVLAEFRS---G-- 326 (347)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~---g-- 326 (347)
...+..++++.. ....+-+|||..+.++.+...+.+.+. ...+..++ +.+...+++.... |
T Consensus 238 EaairtV~qih~-~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 238 EAAIRTVLQIHM-CEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHh-ccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 223333333333 334678999999999999888887643 13455566 2333333332221 2
Q ss_pred CCCEEEEecccccCCCCCcC
Q 019041 327 RSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 327 ~~~vlv~T~~~~~Gidip~v 346 (347)
..+|+|+|++++..+.+++|
T Consensus 313 ~RkvVvstniaetsltidgi 332 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGI 332 (699)
T ss_pred cceEEEEecchheeeeeccE
Confidence 35799999999999998876
No 147
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.52 E-value=1.5e-13 Score=119.05 Aligned_cols=232 Identities=18% Similarity=0.157 Sum_probs=149.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCch
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
+++-++-+|||.||||.- +++++.. ....++.-|.+.||.++.+.+... |+.+-.++|......
T Consensus 190 ~RkIi~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~ 253 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFV 253 (700)
T ss_pred hheEEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeec
Confidence 345577889999999985 4455554 556899999999999999988875 666666666543221
Q ss_pred hhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHH
Q 019041 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETL 222 (347)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~ 222 (347)
.-. ...+..+=+|.++..- -..+++.|+||++++.+.+.+..+.+.+--+..+ =+=+.+- +.+-.+
T Consensus 254 ~~~--~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad--EiHLCGe--psvldl 319 (700)
T KOG0953|consen 254 LDN--GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD--EIHLCGE--PSVLDL 319 (700)
T ss_pred CCC--CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh--hhhccCC--chHHHH
Confidence 100 1235666666554321 2358899999999998888777777664333211 1222222 233344
Q ss_pred HHHhcCCCe-EEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCC
Q 019041 223 ARQFLRNPY-KVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG 301 (347)
Q Consensus 223 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~ 301 (347)
++..+.... .+.+.. ++...... ....+...+....+|..+ .|-|++....+...+.+.|
T Consensus 320 V~~i~k~TGd~vev~~------------YeRl~pL~-----v~~~~~~sl~nlk~GDCv--V~FSkk~I~~~k~kIE~~g 380 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVRE------------YERLSPLV-----VEETALGSLSNLKPGDCV--VAFSKKDIFTVKKKIEKAG 380 (700)
T ss_pred HHHHHhhcCCeeEEEe------------ecccCcce-----ehhhhhhhhccCCCCCeE--EEeehhhHHHHHHHHHHhc
Confidence 444432211 111111 11111111 111345555666566544 3456778889999998887
Q ss_pred CC-ceeecCCCCHHHHHHHHHHHhc--CCCCEEEEecccccCCCC
Q 019041 302 WP-ALSIHGDKNQSERDWVLAEFRS--GRSPIMTATDVAARGLGR 343 (347)
Q Consensus 302 ~~-~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi 343 (347)
.. +++++|..|++.|.+.-..|++ ++.+|||||+++++|+|+
T Consensus 381 ~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL 425 (700)
T KOG0953|consen 381 NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL 425 (700)
T ss_pred CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc
Confidence 65 9999999999999999999997 889999999999999986
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.46 E-value=2.9e-12 Score=120.56 Aligned_cols=265 Identities=15% Similarity=0.155 Sum_probs=168.4
Q ss_pred CcHHHHhhHhhhhc-CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH-HhccCC
Q 019041 50 PTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRA 127 (347)
Q Consensus 50 ~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~ 127 (347)
..+.|.+.++.+.+ +.++++.+|+|||||.++-++++. . ....+++++.|..+.+....+.+. ++....
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P------DTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C------ccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 37889999887654 678999999999999876665554 1 126689999999999887776554 677778
Q ss_pred CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChH------HHHHHHhh
Q 019041 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEP------QIRKIVTQ 201 (347)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~------~~~~~~~~ 201 (347)
|..+..++|..+.+... ....+|+++||+++-.. + ..+..++.|+||.|.+.... +. .++.+...
T Consensus 1215 G~~~~~l~ge~s~~lkl---~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~q 1285 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDLKL---LQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIASQ 1285 (1674)
T ss_pred CceEEecCCccccchHH---hhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHHH
Confidence 88999999888766543 33579999999997554 2 56778999999999765221 11 14444444
Q ss_pred cCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEe-cchhccccHHHHHHHH-HHHhhcCCCe
Q 019041 202 IRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV-TEAEKYNSMFICRLIK-LLKEVMDGSR 279 (347)
Q Consensus 202 ~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~ 279 (347)
+-+..+++++|.++...... .++.....+...... .+.+...+..... ............-... +......+++
T Consensus 1286 ~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~-R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSV-RPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHhheeEEEeehhhccchhh---ccccccceeecCccc-CCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 55567889999887543222 222222222222222 1122212222111 1112222222222222 3333345678
Q ss_pred EEEEecCcccHHHHHHHHhh----------------------CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019041 280 ILIFTETKKGCDQVTRQLRM----------------------DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 336 (347)
Q Consensus 280 ~lvf~~~~~~~~~~~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 336 (347)
.+||+++++++..++..|-. ...+..+=|.+++..+...+...|..|.++|+|...-
T Consensus 1362 ~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred eEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 99999999999888744321 1111222277788888888899999999998887643
No 149
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.46 E-value=4.6e-12 Score=122.36 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=92.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
+..+|+--+|||||++.+..+-..... + ..+.+++||.++.|-.|+.+.+..+........ ...+.....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-~-----~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-P-----KNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-c-----CCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 469999999999999877655444333 2 378999999999999999999998855433211 222222222
Q ss_pred HhhcC-CCcEEEeChHHHHHHHhcCCC--CCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchh
Q 019041 145 RDLRR-GVEIVIATPGRLIDMLEAQHT--NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPRE 218 (347)
Q Consensus 145 ~~~~~-~~~iiv~T~~~l~~~~~~~~~--~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~ 218 (347)
..+.. ...|+|||.+.|......... .-.+-=++|+||||+.........+... + +....+++|+||-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~---~-~~a~~~gFTGTPi~~ 416 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLLKKA---L-KKAIFIGFTGTPIFK 416 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHHHHH---h-ccceEEEeeCCcccc
Confidence 33332 358999999999887765411 1223347888999986333223333222 2 447799999997543
No 150
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.38 E-value=3e-11 Score=103.65 Aligned_cols=128 Identities=24% Similarity=0.317 Sum_probs=87.3
Q ss_pred CCCcHHHHhhHhhhhcC-----CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 48 VEPTPIQAQGWPMALKG-----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~-----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
..+-|+|.+.+..+... ...++...+|.|||+-.+...++.+. +..+||++|..+| .||.+++.+
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~---------ra~tLVvaP~VAl-mQW~nEI~~ 252 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD---------RAPTLVVAPTVAL-MQWKNEIER 252 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc---------cCCeeEEccHHHH-HHHHHHHHH
Confidence 36788999988765443 24688899999999876655555322 4458999999998 789999999
Q ss_pred hccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCC-------------C--CcccEEEEecchhhh
Q 019041 123 FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN-------------L--RRVTYLVLDEADRML 187 (347)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-------------~--~~~~~iIvDE~h~~~ 187 (347)
+..+ ...+...+|.. ....+..+. +++++.+|+..+-...+..... + -.+--||+||||.+.
T Consensus 253 ~T~g-slkv~~YhG~~-R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 253 HTSG-SLKVYIYHGAK-RDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIK 329 (791)
T ss_pred hccC-ceEEEEEeccc-ccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccc
Confidence 8773 34554555544 434444433 5899999998876655431110 1 135679999999765
Q ss_pred c
Q 019041 188 D 188 (347)
Q Consensus 188 ~ 188 (347)
+
T Consensus 330 ~ 330 (791)
T KOG1002|consen 330 D 330 (791)
T ss_pred c
Confidence 4
No 151
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.38 E-value=1.1e-11 Score=104.50 Aligned_cols=76 Identities=28% Similarity=0.271 Sum_probs=59.0
Q ss_pred CCCCCCcHHHHhhHhh----hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 45 LGFVEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~----~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
++| .+++.|.+.+.. +.+++++++.+|||+|||++++.+++..+....... .+.+++|.+++.++.+|....+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHH
Confidence 566 469999995544 556889999999999999999999987766533210 1348999999999999987777
Q ss_pred HHh
Q 019041 121 LKF 123 (347)
Q Consensus 121 ~~~ 123 (347)
++.
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 152
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.38 E-value=1.1e-11 Score=104.50 Aligned_cols=76 Identities=28% Similarity=0.271 Sum_probs=59.0
Q ss_pred CCCCCCcHHHHhhHhh----hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 45 LGFVEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~----~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
++| .+++.|.+.+.. +.+++++++.+|||+|||++++.+++..+....... .+.+++|.+++.++.+|....+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHH
Confidence 566 469999995544 556889999999999999999999987766533210 1348999999999999987777
Q ss_pred HHh
Q 019041 121 LKF 123 (347)
Q Consensus 121 ~~~ 123 (347)
++.
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 153
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.37 E-value=5.5e-11 Score=110.25 Aligned_cols=137 Identities=12% Similarity=0.107 Sum_probs=95.8
Q ss_pred EEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHh-
Q 019041 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD- 146 (347)
Q Consensus 68 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (347)
+..+.+|||||.+|+-.+...+.. +..+|+++|...|..|+.+.++.... +..+..++++.+..+..+.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 344446999999988777666655 67899999999999999999986422 2467788888777655433
Q ss_pred --hcC-CCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC------ChHHHHHHHhhcCCCccEEEEEeecch
Q 019041 147 --LRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG------FEPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 147 --~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~------~~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
... ...|+|||-..+ ...+.++++||+||=|.-...+ ....+...... ..+..+++.|||++-
T Consensus 234 ~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTPSl 305 (665)
T PRK14873 234 LAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHARTA 305 (665)
T ss_pred HHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCCCH
Confidence 333 478999995433 3367889999999999654332 22333333333 367889999999876
Q ss_pred hHHHH
Q 019041 218 EVETL 222 (347)
Q Consensus 218 ~~~~~ 222 (347)
.....
T Consensus 306 es~~~ 310 (665)
T PRK14873 306 EAQAL 310 (665)
T ss_pred HHHHH
Confidence 54433
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=3.5e-11 Score=112.96 Aligned_cols=127 Identities=24% Similarity=0.284 Sum_probs=88.2
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.+++.|.-.--.+..|+ +..+.||-|||+++.+|+.-.... |.-+-|++.+..||..-.+++..+-..+|
T Consensus 169 ~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~--------GkgVHvVTVNDYLA~RDaewmgply~fLG 238 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALT--------GNGVHVVTVNDYLAKRDSEWMGPLYEFHG 238 (1112)
T ss_pred cccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHc--------CCCcEEEEechhhhhccHHHHHHHHHHhC
Confidence 45555554444445554 899999999999998887666555 45578889999999998999998888899
Q ss_pred ceEEEEECC-CCCchhhHhhcCCCcEEEeChHHH-HHHHhcCC------CCCCcccEEEEecchhhh
Q 019041 129 IRSTCIYGG-APKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRML 187 (347)
Q Consensus 129 ~~~~~~~~~-~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~ 187 (347)
+.+.++... ...... .-.-.++|+++|...| +++++.+. .....+.+.||||++.++
T Consensus 239 Lsvg~i~~~~~~~~~r--r~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 239 LSVDCIDKHQPNSEAR--RKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CceeecCCCCCCHHHH--HHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 999877653 233332 2333589999997655 23332221 123457899999999653
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.35 E-value=2.7e-10 Score=107.60 Aligned_cols=289 Identities=17% Similarity=0.136 Sum_probs=151.8
Q ss_pred CCcHHHHhhHhhhhc--------CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALK--------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~--------~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
.-..+|..|++.+.. |--++--|.||+|||++= .-++..+.... .+.|..|..-.+.|--|.-+.+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd~~-----~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRDDK-----QGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCCCC-----CCceEEEEccccceeccchHHH
Confidence 446699999987654 223555679999999853 33444443322 2556677667777776766666
Q ss_pred HHhccCCCceEEEEECCC------------------------------------------CCchhh-Hhhc--------C
Q 019041 121 LKFGSRAGIRSTCIYGGA------------------------------------------PKGPQI-RDLR--------R 149 (347)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~-~~~~--------~ 149 (347)
++-..--+-...++.|+. ...... ..+. -
T Consensus 482 r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 482 KTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 643221111222222221 000000 0000 1
Q ss_pred CCcEEEeChHHHHHHHhcC---CCCCC----cccEEEEecchhhhccCChHHHHHHHhh-cCCCccEEEEEeecchhHHH
Q 019041 150 GVEIVIATPGRLIDMLEAQ---HTNLR----RVTYLVLDEADRMLDMGFEPQIRKIVTQ-IRPDRQTLYWSATWPREVET 221 (347)
Q Consensus 150 ~~~iiv~T~~~l~~~~~~~---~~~~~----~~~~iIvDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~lsaT~~~~~~~ 221 (347)
...++|+|+++++...... ...+. .-+.+|+||+|......+. .+..++.- ..-+.++++||||+++....
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~-~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLP-ALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHH-HHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 3689999999998765321 11111 1368999999975443322 23333331 12467899999999887544
Q ss_pred HH-HHh----------cCCC---eEEE--eccc-cc---------------------------ccccccceeEEEecchh
Q 019041 222 LA-RQF----------LRNP---YKVI--IGSL-EL---------------------------KANQSINQVVEVVTEAE 257 (347)
Q Consensus 222 ~~-~~~----------~~~~---~~~~--~~~~-~~---------------------------~~~~~~~~~~~~~~~~~ 257 (347)
.+ +.| .+.| ..+. ..+. .. ..+....-.+..+....
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 22 222 1211 1111 1000 00 00001111111111111
Q ss_pred c----cccHHHHHHHHHH----Hhhc-----CCCe---EEEEecCcccHHHHHHHHhhC----C--CCceeecCCCCHHH
Q 019041 258 K----YNSMFICRLIKLL----KEVM-----DGSR---ILIFTETKKGCDQVTRQLRMD----G--WPALSIHGDKNQSE 315 (347)
Q Consensus 258 ~----~~~~~~~~l~~~~----~~~~-----~~~~---~lvf~~~~~~~~~~~~~L~~~----~--~~~~~~~~~~~~~~ 315 (347)
. ....+...+.+.+ ..+. .+++ .||-.++++.+..+++.|.+. + +.+.++|+..+...
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~ 800 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLL 800 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHH
Confidence 1 1111222222222 1111 2333 488899999999998888654 3 33677899988777
Q ss_pred HHHHHHHH----------------------hc----CCCCEEEEecccccCCCCC
Q 019041 316 RDWVLAEF----------------------RS----GRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 316 r~~~~~~f----------------------~~----g~~~vlv~T~~~~~Gidip 344 (347)
|..+.+.. .+ +...|+|+|++++.|+|+.
T Consensus 801 Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d 855 (1110)
T TIGR02562 801 RSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD 855 (1110)
T ss_pred HHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc
Confidence 76655443 11 3567999999999999974
No 156
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.34 E-value=4.4e-11 Score=106.63 Aligned_cols=138 Identities=21% Similarity=0.181 Sum_probs=91.0
Q ss_pred CCcHHHHhhHhhhhc-----CCcEEEEcCCCCchhHHhHHHHHHhhhcC--CCccCCCCCEEEEEcCcHHHHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALK-----GRDLIGIAETGSGKTLSYLLPAFVHVSAQ--PRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~-----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 121 (347)
++.++|..++..+.- ....++...+|.|||++.+..++..-... ..........+||||| ..|+.||..++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHHH
Confidence 578999999877654 34689999999999987666555432211 1111111225999999 578899999998
Q ss_pred HhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHH----HHhcCCC--CC--CcccEEEEecchhhhc
Q 019041 122 KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID----MLEAQHT--NL--RRVTYLVLDEADRMLD 188 (347)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~----~~~~~~~--~~--~~~~~iIvDE~h~~~~ 188 (347)
.-....-+.+.+.+|.... +........+||+|+||.-+.. -.....- .+ -.|..||+||||.+-+
T Consensus 404 ~rl~~n~LsV~~~HG~n~r-~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKR-EISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred HHHhhcceEEEEecCCccc-cCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc
Confidence 8767777888888877642 2222334568999999876654 1111110 11 1468999999997543
No 157
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.29 E-value=5.9e-12 Score=116.15 Aligned_cols=282 Identities=17% Similarity=0.212 Sum_probs=160.2
Q ss_pred CCcHHHHhhHhhhhc----CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.+.+||...+..+.. +-+.++...||.|||+..+..+...+.... ....-||+||+..|. .|..++..|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~-----~~GP~LvivPlstL~-NW~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQ-----MQGPFLIIVPLSTLV-NWSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcc-----cCCCeEEeccccccC-Cchhhccccc
Confidence 789999999887654 347899999999999865554444443322 134468999998885 4677777774
Q ss_pred cCCCceEEEEECCCCCchhh--HhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc
Q 019041 125 SRAGIRSTCIYGGAPKGPQI--RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (347)
.. +..+...|.......+ ......++|+++|++++.+. ...+.--+|.++||||-|++.+.. ..+...+...
T Consensus 468 PS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd--k~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~ 541 (1157)
T KOG0386|consen 468 PS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD--KALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTH 541 (1157)
T ss_pred cc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC--HHHHhccCCcceeecccccccchh--hHHHHHhhcc
Confidence 43 3344444433332222 11234689999999987651 111122247899999999876532 1122222211
Q ss_pred CCCccEEEEEeecchhHHH------------------HHHHhcCCCeEEE-----eccc---------------------
Q 019041 203 RPDRQTLYWSATWPREVET------------------LARQFLRNPYKVI-----IGSL--------------------- 238 (347)
Q Consensus 203 ~~~~~~i~lsaT~~~~~~~------------------~~~~~~~~~~~~~-----~~~~--------------------- 238 (347)
-...+.+++|+||....-. .++.|+..|..-. ....
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRl 621 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRL 621 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhh
Confidence 1223345555553221000 0000000000000 0000
Q ss_pred ----------------------------------cc--------------------ccccccceeEEE------ecchhc
Q 019041 239 ----------------------------------EL--------------------KANQSINQVVEV------VTEAEK 258 (347)
Q Consensus 239 ----------------------------------~~--------------------~~~~~~~~~~~~------~~~~~~ 258 (347)
.. ..+....+-+.+ ......
T Consensus 622 KkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~ 701 (1157)
T KOG0386|consen 622 KKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYD 701 (1157)
T ss_pred hHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccC
Confidence 00 000000000000 000000
Q ss_pred c-c-------cHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCC-
Q 019041 259 Y-N-------SMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP- 329 (347)
Q Consensus 259 ~-~-------~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~- 329 (347)
. . ..+...++..++ ..|+++|.||.-..-..-+..+|.-.++....+.|.+...+|...++.|+.-+.+
T Consensus 702 ~~dL~R~sGKfELLDRiLPKLk--atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~y 779 (1157)
T KOG0386|consen 702 IKDLVRVSGKFELLDRILPKLK--ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPY 779 (1157)
T ss_pred hhHHHHhccHHHHHHhhhHHHH--hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCce
Confidence 0 0 011122222222 3588999999988888888899988899999999999999999999999976544
Q ss_pred --EEEEecccccCCCCC
Q 019041 330 --IMTATDVAARGLGRI 344 (347)
Q Consensus 330 --vlv~T~~~~~Gidip 344 (347)
+|.+|.+.+.|+|+.
T Consensus 780 f~FllstragglglNlQ 796 (1157)
T KOG0386|consen 780 FIFLLSTRAGGLGLNLQ 796 (1157)
T ss_pred eeeeeeecccccccchh
Confidence 889999999999875
No 158
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.28 E-value=4.5e-11 Score=104.34 Aligned_cols=294 Identities=12% Similarity=0.006 Sum_probs=181.5
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.+.-+....+|.++++.+.+|++.++.-.+.+||++++..++.......+ ....+++.|+.+++....+.+.-.
T Consensus 281 ~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 281 KNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred cccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceEEE
Confidence 35556788999999999999999999999999999988877666554432 334788889888876644432211
Q ss_pred cc---CCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCC----CCcccEEEEecchhhhccC---ChH
Q 019041 124 GS---RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN----LRRVTYLVLDEADRMLDMG---FEP 193 (347)
Q Consensus 124 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~----~~~~~~iIvDE~h~~~~~~---~~~ 193 (347)
.. ...-.++..+++.++..+......+.+++++.+......+..+... +-...+.++||+|...-.. ...
T Consensus 355 ~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 355 VEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred EEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 11 0111233444444444443334457899999999887766544443 2345688999999543221 223
Q ss_pred HHHHHHhhc-----CCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEec----chhccccHHH
Q 019041 194 QIRKIVTQI-----RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT----EAEKYNSMFI 264 (347)
Q Consensus 194 ~~~~~~~~~-----~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 264 (347)
.++++++.. ....+++-.++|.....+-..+....+.......+...... ...+.... ........++
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~---K~~V~WNP~~~P~~~~~~~~~i 511 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSE---KLFVLWNPSAPPTSKSEKSSKV 511 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCcc---ceEEEeCCCCCCcchhhhhhHH
Confidence 333333322 24568888888876655444443333333333333222111 11111111 1111122233
Q ss_pred HHHHHHHH-hhcCCCeEEEEecCcccHHHHHHHHh----hCCC----CceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 265 CRLIKLLK-EVMDGSRILIFTETKKGCDQVTRQLR----MDGW----PALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 265 ~~l~~~~~-~~~~~~~~lvf~~~~~~~~~~~~~L~----~~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.....++. ....+-+++-||.+++.|+.+....+ +.+. .+..+.|+...++|..+....-.|++.-+|+|+
T Consensus 512 ~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTN 591 (1034)
T KOG4150|consen 512 VEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATN 591 (1034)
T ss_pred HHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecc
Confidence 33333332 33456799999999999987765443 3332 244578889999999999998899999999999
Q ss_pred ccccCCCCCcC
Q 019041 336 VAARGLGRITV 346 (347)
Q Consensus 336 ~~~~Gidip~v 346 (347)
+++-|||+-++
T Consensus 592 ALELGIDIG~L 602 (1034)
T KOG4150|consen 592 ALELGIDIGHL 602 (1034)
T ss_pred hhhhccccccc
Confidence 99999999765
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.25 E-value=1.7e-09 Score=94.52 Aligned_cols=236 Identities=21% Similarity=0.249 Sum_probs=154.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCC-Cc----eEEEEEC--------------CCCCchhhHhh-------------
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRA-GI----RSTCIYG--------------GAPKGPQIRDL------------- 147 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~-~~----~~~~~~~--------------~~~~~~~~~~~------------- 147 (347)
.+++|||+|++..|..+.+.+.++.... .+ +...-+| ......+...+
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 6899999999999999999887765541 10 0000000 00001111111
Q ss_pred ------------cCCCcEEEeChHHHHHHHhc------CCCCCCcccEEEEecchhhhccCCh--HHHHHHHhhcCC---
Q 019041 148 ------------RRGVEIVIATPGRLIDMLEA------QHTNLRRVTYLVLDEADRMLDMGFE--PQIRKIVTQIRP--- 204 (347)
Q Consensus 148 ------------~~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~iIvDE~h~~~~~~~~--~~~~~~~~~~~~--- 204 (347)
...+||||++|=-|...+.. ...-++.+.++|+|.+|.+....|. ..+...+...+.
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~ 196 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSH 196 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCC
Confidence 12589999999888877764 2234788999999999977644332 223333333321
Q ss_pred ------------------CccEEEEEeecchhHHHHHHHhcCCCeEE-Eecccc------cccccccceeEEEecc----
Q 019041 205 ------------------DRQTLYWSATWPREVETLARQFLRNPYKV-IIGSLE------LKANQSINQVVEVVTE---- 255 (347)
Q Consensus 205 ------------------~~~~i~lsaT~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~---- 255 (347)
-+|.+++|+...+.+..+....+.+.... .+.... ......+.+.+...+.
T Consensus 197 ~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~ 276 (442)
T PF06862_consen 197 DTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPA 276 (442)
T ss_pred CCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcc
Confidence 25999999999999888888866553221 111111 1122233344433222
Q ss_pred --hhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEE
Q 019041 256 --AEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA 333 (347)
Q Consensus 256 --~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 333 (347)
.+.....+...++..+......+++|||++|.-+-..+.++|++.++....++..++..+..++-..|..|+.++|+.
T Consensus 277 ~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~ 356 (442)
T PF06862_consen 277 DDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLY 356 (442)
T ss_pred hhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEE
Confidence 222223344445544443335579999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 019041 334 TD 335 (347)
Q Consensus 334 T~ 335 (347)
|.
T Consensus 357 TE 358 (442)
T PF06862_consen 357 TE 358 (442)
T ss_pred Eh
Confidence 95
No 160
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.19 E-value=1.7e-10 Score=85.95 Aligned_cols=82 Identities=41% Similarity=0.651 Sum_probs=73.1
Q ss_pred HHHHHHHhhc-CCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 266 RLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 266 ~l~~~~~~~~-~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
.+...+.+.. .++++||||++..+++.+++.|.+.+.++..+||.++..+|..+++.|..|...+|++|+++++|+|+|
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~ 95 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLP 95 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChh
Confidence 4555555443 567999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred cCC
Q 019041 345 TVC 347 (347)
Q Consensus 345 ~v~ 347 (347)
+++
T Consensus 96 ~~~ 98 (131)
T cd00079 96 NVS 98 (131)
T ss_pred hCC
Confidence 763
No 161
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.12 E-value=1.5e-09 Score=89.18 Aligned_cols=131 Identities=27% Similarity=0.311 Sum_probs=96.3
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..|+ .|++.|.-+.-.+..|+ ++++.||-|||+++.+++...... |..+-|+|.+..|+..-.+++..+
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHH
Confidence 3555 88899988887777665 999999999999888877666555 667999999999999999999999
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHH-HHhcCCC------CCCcccEEEEecchhhh
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID-MLEAQHT------NLRRVTYLVLDEADRML 187 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~-~~~~~~~------~~~~~~~iIvDE~h~~~ 187 (347)
-..+|+.+....++.........+ .++|+++|...+.- +++.... ....+.++||||++.++
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 889999999999887654433334 36899999988753 3332211 14578999999999754
No 162
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.12 E-value=7.3e-10 Score=99.19 Aligned_cols=154 Identities=18% Similarity=0.242 Sum_probs=102.6
Q ss_pred CCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.+..||...++.+. +|=|.++...+|.|||.- .+..++++.+.... -...||++|...| ..|..++.+|+
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~nI----wGPFLVVtpaStL-~NWaqEisrFl 640 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHNI----WGPFLVVTPASTL-HNWAQEISRFL 640 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhccC----CCceEEeehHHHH-hHHHHHHHHhC
Confidence 35567777766543 467899999999999964 55566666554322 3457999998777 77899999986
Q ss_pred cCCCceEEEEECCCCCchhhHhh---------cCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHH
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDL---------RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQI 195 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~ 195 (347)
+ .+++.-..|+.+.....+.+ ..+.+|+|++++.+...-. ++.--+|.++|+|||+.+-.. ....+
T Consensus 641 P--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek--y~qkvKWQYMILDEAQAIKSS-sS~RW 715 (1185)
T KOG0388|consen 641 P--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK--YLQKVKWQYMILDEAQAIKSS-SSSRW 715 (1185)
T ss_pred c--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH--HHHhhhhhheehhHHHHhhhh-hhhHH
Confidence 6 56778888888777666552 3468999999988753221 222235789999999976443 23334
Q ss_pred HHHHhhcCCCccEEEEEeec
Q 019041 196 RKIVTQIRPDRQTLYWSATW 215 (347)
Q Consensus 196 ~~~~~~~~~~~~~i~lsaT~ 215 (347)
..++... .+-.+++|+||
T Consensus 716 KtLLsF~--cRNRLLLTGTP 733 (1185)
T KOG0388|consen 716 KTLLSFK--CRNRLLLTGTP 733 (1185)
T ss_pred HHHhhhh--ccceeeecCCc
Confidence 4443332 23356677773
No 163
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.08 E-value=9.4e-09 Score=95.03 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=61.8
Q ss_pred HHHHHHhhc-CCCeEEEEecCcccHHHHHHHHhh----------------------CCCCceeecCCCCHHHHHHHHHHH
Q 019041 267 LIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRM----------------------DGWPALSIHGDKNQSERDWVLAEF 323 (347)
Q Consensus 267 l~~~~~~~~-~~~~~lvf~~~~~~~~~~~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f 323 (347)
|++++.... -|.+.|||..+......|..+|.. .|...+.+.|.+....|+.+.++|
T Consensus 1131 LleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~F 1210 (1567)
T KOG1015|consen 1131 LLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEF 1210 (1567)
T ss_pred HHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHh
Confidence 344444332 366999999999999999888863 255678899999999999999999
Q ss_pred hcC-CC---CEEEEecccccCCCCCc
Q 019041 324 RSG-RS---PIMTATDVAARGLGRIT 345 (347)
Q Consensus 324 ~~g-~~---~vlv~T~~~~~Gidip~ 345 (347)
++- +. -.||+|.+.+-|||+-.
T Consensus 1211 Ndp~NlRaRl~LISTRAGsLGiNLvA 1236 (1567)
T KOG1015|consen 1211 NDPTNLRARLFLISTRAGSLGINLVA 1236 (1567)
T ss_pred cCcccceeEEEEEeeccCccccceee
Confidence 864 22 28999999999999754
No 164
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.00 E-value=8.7e-10 Score=73.93 Aligned_cols=53 Identities=32% Similarity=0.490 Sum_probs=50.0
Q ss_pred HHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 295 RQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 295 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~ 53 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDAS 53 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTES
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccc
Confidence 36788999999999999999999999999999999999999999999999864
No 165
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.99 E-value=2.1e-09 Score=101.07 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=109.5
Q ss_pred CCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
+||.||...++.+. ++-|.|+...+|.|||+ -.+.+++++..++..= |++ ||+||+..+. .|.-++++|+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTI-QtISllAhLACeegnW---GPH-LIVVpTsviL-nWEMElKRwc 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTI-QTISLLAHLACEEGNW---GPH-LIVVPTSVIL-NWEMELKRWC 688 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchh-HHHHHHHHHHhcccCC---CCc-eEEeechhhh-hhhHHHhhhC
Confidence 57899998888754 35689999999999996 4566677766543211 444 7888998775 5788999996
Q ss_pred cCCCceEEEEECCCCCchhhHh-h--cCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRD-L--RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (347)
. ++.+.+.+|........+. + .+..+|+|++|..+...+.... -.+|.++|+||+|.+.++. ...|..++..
T Consensus 689 P--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFk--rkrWqyLvLDEaqnIKnfk-sqrWQAllnf 763 (1958)
T KOG0391|consen 689 P--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFK--RKRWQYLVLDEAQNIKNFK-SQRWQALLNF 763 (1958)
T ss_pred C--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHH--hhccceeehhhhhhhcchh-HHHHHHHhcc
Confidence 6 6678889988776655443 2 2247899999998877554322 2578999999999886632 3334444433
Q ss_pred cCCCccEEEEEeecch
Q 019041 202 IRPDRQTLYWSATWPR 217 (347)
Q Consensus 202 ~~~~~~~i~lsaT~~~ 217 (347)
+..+.+++|+|+-.
T Consensus 764 --nsqrRLLLtgTPLq 777 (1958)
T KOG0391|consen 764 --NSQRRLLLTGTPLQ 777 (1958)
T ss_pred --chhheeeecCCchh
Confidence 34467888888644
No 166
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.99 E-value=1.3e-08 Score=94.55 Aligned_cols=126 Identities=24% Similarity=0.235 Sum_probs=88.7
Q ss_pred cHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCce
Q 019041 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (347)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 130 (347)
+++=.+.+..+.-...-+..+-||-|||+++.+|+.-.... +..+.+++.+.-|+.--.+++..+..++|+.
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 33334444444444556899999999999988876544443 5568999999999999999999988889999
Q ss_pred EEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcC------CCCCCcccEEEEecchhh
Q 019041 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRM 186 (347)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~ 186 (347)
+.....+....+....+ .++|..+|...+ .+.++.. ........+-|+||++.+
T Consensus 152 vG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 152 VGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred eeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 98888888665554444 479999997654 1222111 111335778888988854
No 167
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.94 E-value=1.4e-08 Score=96.44 Aligned_cols=143 Identities=17% Similarity=0.234 Sum_probs=87.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH---------HhccCCCceEEEEE
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL---------KFGSRAGIRSTCIY 135 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~---------~~~~~~~~~~~~~~ 135 (347)
.++.+.|+||+|||.+++-.++......+ -.++||+||+.++.+.+.+.+. ..-....++...+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 47899999999999998887776655432 4579999999999887765543 11112234444444
Q ss_pred CCC-------CCchhhHhhcC-------CCcEEEeChHHHHHHHh--cC--------C-CCCC----cccEEEEecchhh
Q 019041 136 GGA-------PKGPQIRDLRR-------GVEIVIATPGRLIDMLE--AQ--------H-TNLR----RVTYLVLDEADRM 186 (347)
Q Consensus 136 ~~~-------~~~~~~~~~~~-------~~~iiv~T~~~l~~~~~--~~--------~-~~~~----~~~~iIvDE~h~~ 186 (347)
++. +....++.+.. ...|.|+|.+.|..-.. .. . ..+. .--+||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 332 11223333322 36899999998865311 10 0 1111 1248999999997
Q ss_pred hccCChHHHHHHHhhcCCCccEEEEEeecch
Q 019041 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
... ...+..+ ..+.+.. ++.+|||.+.
T Consensus 214 ~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred Ccc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 442 2234444 4454433 6779999876
No 168
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.92 E-value=6.6e-09 Score=85.80 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=50.4
Q ss_pred CCcHHHHhhHhhhhcCCc-EEEEcCCCCchhHHhHHHHHHhhhcC-CCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLSYLLPAFVHVSAQ-PRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~-~lv~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
++.+.|..++..++.... .+|+||+|+|||.+.. .++..+... .......+.++|+++|+..-+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999998887 9999999999996544 444444210 000011377899999999999999998887
No 169
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.92 E-value=2.4e-08 Score=82.28 Aligned_cols=157 Identities=14% Similarity=0.095 Sum_probs=104.2
Q ss_pred CCcHHHHhhHhhhhc----------CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALK----------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~----------~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 118 (347)
.++..|.+++-...+ +.-+++-..||.||-......++..+.+. ..+.++++.+..|.....+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RKRAVWVSVSNDLKYDAER 109 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CCceEEEECChhhhhHHHH
Confidence 468888888765542 34578888999999987777777777663 4479999999999999888
Q ss_pred HHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC---C-------C--CcccEEEEecchhh
Q 019041 119 EALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT---N-------L--RRVTYLVLDEADRM 186 (347)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~---~-------~--~~~~~iIvDE~h~~ 186 (347)
.++.++.. .+.+..+..-..... ......|+++|+.+|......... . + ..-++||+||||..
T Consensus 110 Dl~DIG~~-~i~v~~l~~~~~~~~----~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 110 DLRDIGAD-NIPVHPLNKFKYGDI----IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHHhCCC-cccceechhhccCcC----CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 89887554 444443333211111 111357999999998776432111 0 1 12359999999987
Q ss_pred hccCC--------hHHHHHHHhhcCCCccEEEEEeecchh
Q 019041 187 LDMGF--------EPQIRKIVTQIRPDRQTLYWSATWPRE 218 (347)
Q Consensus 187 ~~~~~--------~~~~~~~~~~~~~~~~~i~lsaT~~~~ 218 (347)
.+... +..+..+.+.+ +..++++.|||...+
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgase 223 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASE 223 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCC
Confidence 66432 13344444455 667799999996543
No 170
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=4.2e-08 Score=85.42 Aligned_cols=287 Identities=22% Similarity=0.227 Sum_probs=170.1
Q ss_pred CCCcHHHHhhHhhhhcCCcEEEEc-CCCCch--hHHhHHHHHHhhhcC--------CC-ccC----------C----CCC
Q 019041 48 VEPTPIQAQGWPMALKGRDLIGIA-ETGSGK--TLSYLLPAFVHVSAQ--------PR-LVQ----------G----EGP 101 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~-~tGsGK--T~~~~~~~~~~~~~~--------~~-~~~----------~----~~~ 101 (347)
.++++.|.+++..+.+.++++..- ..+.|+ +.+|.+.++.++.+. .+ ..+ . ..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 579999999999988888876432 334454 335677777776332 11 111 0 157
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhccCCCc---------eEEEEECCCCCc---------------------hh--------
Q 019041 102 IVLVLAPTRELAVQIQEEALKFGSRAGI---------RSTCIYGGAPKG---------------------PQ-------- 143 (347)
Q Consensus 102 ~~lil~p~~~l~~q~~~~~~~~~~~~~~---------~~~~~~~~~~~~---------------------~~-------- 143 (347)
++||+||+++-|-.+...+..++.+.+- +...-+++.... ..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999888776333221 111112221110 00
Q ss_pred --hHhh--cCCCcEEEeChHHHHHHHhcCCC------CCCcccEEEEecchhhhccCChHHHHHH--HhhcCCC------
Q 019041 144 --IRDL--RRGVEIVIATPGRLIDMLEAQHT------NLRRVTYLVLDEADRMLDMGFEPQIRKI--VTQIRPD------ 205 (347)
Q Consensus 144 --~~~~--~~~~~iiv~T~~~l~~~~~~~~~------~~~~~~~iIvDE~h~~~~~~~~~~~~~~--~~~~~~~------ 205 (347)
+..+ ....+|+|++|--|.-++..... .++.+.++|||.+|.++...|......+ +...+..
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCCCh
Confidence 0111 23589999999887776653222 3667889999999988765554332222 2222211
Q ss_pred ---------------ccEEEEEeecchhHHHHHHHhcCCCeEEEeccccc---------ccccccceeEEE---ecchhc
Q 019041 206 ---------------RQTLYWSATWPREVETLARQFLRNPYKVIIGSLEL---------KANQSINQVVEV---VTEAEK 258 (347)
Q Consensus 206 ---------------~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~---~~~~~~ 258 (347)
+|.+++|+--.+....++..++.+-........-. .+.......+.. ....+.
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~ 534 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDA 534 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchH
Confidence 35556665555555555555554422111110000 000111111111 111222
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 259 YNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
+...+...++-.+.+. ....+|||.++.-+-..+.+++++.++....++...++..-.++-+.|-.|...||+-|.
T Consensus 535 RFkyFv~~ImPq~~k~-t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTE 610 (698)
T KOG2340|consen 535 RFKYFVDKIMPQLIKR-TESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTE 610 (698)
T ss_pred HHHHHHHhhchhhccc-ccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEeh
Confidence 2223333333333332 245789999999999999999999999999999999998888999999999999999985
No 171
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.84 E-value=2.5e-08 Score=79.39 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCcHHHHhhHhhhhcCC--cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 019041 49 EPTPIQAQGWPMALKGR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~--~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 126 (347)
+|++.|++++..++.+. -.++++|.|+|||.+ +..+...+... +.++++++||..-+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-------g~~v~~~apT~~Aa~~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-------GKRVIGLAPTNKAAKELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-------CCeEEEECCcHHHHHHHHHhh------
Confidence 47889999999986543 577889999999974 44444444442 568999999998887755552
Q ss_pred CCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC----CCCcccEEEEecchhhhccCChHHHHHHHhhc
Q 019041 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT----NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (347)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~----~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (347)
++.. .|.+.++........ .....+++||||+-.+ -...+..++...
T Consensus 67 -~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~ 117 (196)
T PF13604_consen 67 -GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLA 117 (196)
T ss_dssp -TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS
T ss_pred -Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHH
Confidence 1111 122222221111110 1456789999999986 345566677766
Q ss_pred CC-CccEEEEEee
Q 019041 203 RP-DRQTLYWSAT 214 (347)
Q Consensus 203 ~~-~~~~i~lsaT 214 (347)
.. ..+++++.-+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 55 5566666554
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.82 E-value=2e-09 Score=100.35 Aligned_cols=264 Identities=19% Similarity=0.194 Sum_probs=152.1
Q ss_pred CcHHHHhhHhhhhc-CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 50 PTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 50 ~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
..+.|...+..... ..++++-+|||+|||.++-..+...+...+ +.++++++|-.+|...-.+.+.+.....|
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCC
Confidence 34556655544322 468899999999999998888777766654 67899999999999887777765444448
Q ss_pred ceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC--CCCCCcccEEEEecchhhhccCChHHHHHHH-------
Q 019041 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ--HTNLRRVTYLVLDEADRMLDMGFEPQIRKIV------- 199 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~------- 199 (347)
+.+..+.|+...+.. -...++++|+||++.-...+++ ...+.+++++|+||.|.+... .++.+..+.
T Consensus 1002 ~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCc
Confidence 889999888877622 1224799999999988776633 345678999999999965443 222222221
Q ss_pred hhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhcc--ccHHHHHHHHHHHhhcCC
Q 019041 200 TQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY--NSMFICRLIKLLKEVMDG 277 (347)
Q Consensus 200 ~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 277 (347)
....+..+.+++|--+.. . ..++.+++.+..+....+ ..+......+.-....... --..-....+.++...+.
T Consensus 1078 ~~t~~~vr~~glsta~~n-a-~dla~wl~~~~~~nf~~s--vrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~ 1153 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTALAN-A-NDLADWLNIKDMYNFRPS--VRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPI 1153 (1230)
T ss_pred cccCcchhhhhHhhhhhc-c-HHHHHHhCCCCcCCCCcc--cccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCC
Confidence 111223455555543322 1 233444444333222111 1111111111111110000 000111456677777888
Q ss_pred CeEEEEecCcccHHHHHHHHh----hCCCCceeecCCCCHHHHHHHHHHHhcCCCC
Q 019041 278 SRILIFTETKKGCDQVTRQLR----MDGWPALSIHGDKNQSERDWVLAEFRSGRSP 329 (347)
Q Consensus 278 ~~~lvf~~~~~~~~~~~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 329 (347)
++.+||+.++++...-+..|- ....+.-.++. +..+-+.++...++..++
T Consensus 1154 ~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1154 KPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CceEEEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccchh
Confidence 999999999887554444332 12222223333 255556666666655443
No 173
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.78 E-value=8.6e-09 Score=81.23 Aligned_cols=146 Identities=15% Similarity=0.135 Sum_probs=74.4
Q ss_pred CCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 019041 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 127 (347)
...+..|..+++++...+.+++.||.|+|||+.++..++..+.... -.++++.-|..+.. +.+.-+....
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~------~~kiii~Rp~v~~~----~~lGflpG~~ 72 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE------YDKIIITRPPVEAG----EDLGFLPGDL 72 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-------SEEEEEE-S--TT--------SS----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC------CcEEEEEecCCCCc----cccccCCCCH
Confidence 4568899999999998889999999999999998888888876632 45788887876531 1111110000
Q ss_pred CceE-------EEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHh
Q 019041 128 GIRS-------TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVT 200 (347)
Q Consensus 128 ~~~~-------~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~ 200 (347)
.-.. ...............+.....|-+.....+.. .. +. -.+||+|||+.+ ....+..++.
T Consensus 73 ~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG----rt--~~-~~~iIvDEaQN~----t~~~~k~ilT 141 (205)
T PF02562_consen 73 EEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRG----RT--FD-NAFIIVDEAQNL----TPEELKMILT 141 (205)
T ss_dssp -----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--------B--SEEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC----cc--cc-ceEEEEecccCC----CHHHHHHHHc
Confidence 0000 00000000111112222234455555332221 11 11 379999999986 5678888999
Q ss_pred hcCCCccEEEEEee
Q 019041 201 QIRPDRQTLYWSAT 214 (347)
Q Consensus 201 ~~~~~~~~i~lsaT 214 (347)
+....++++++.-.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 99888888777655
No 174
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.77 E-value=1.7e-08 Score=68.33 Aligned_cols=56 Identities=34% Similarity=0.506 Sum_probs=51.9
Q ss_pred HHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 292 QVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 292 ~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+++.|+..++.+..+||.++..+|..+++.|+++...+|++|+++++|+|+|+++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~ 57 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVD 57 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCC
Confidence 46778888899999999999999999999999999999999999999999999764
No 175
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.72 E-value=9e-07 Score=87.41 Aligned_cols=136 Identities=22% Similarity=0.191 Sum_probs=89.3
Q ss_pred CCCcHHHHhhHhhhhc-----CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 48 VEPTPIQAQGWPMALK-----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~-----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
..++++|.+.++.+.. +.+.++...+|.|||+..+..+......... ..+..+++||. +++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~----~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKV----YLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccC----CCCCeEEEecH-HHHHHHHHHHhh
Confidence 4688999998876542 5678889999999997655444431222111 03468999996 555788888888
Q ss_pred hccCCCceEEEEECCCCC----chhhHhhcCC-----CcEEEeChHHHHHHH-hcCCCCCCcccEEEEecchhhhcc
Q 019041 123 FGSRAGIRSTCIYGGAPK----GPQIRDLRRG-----VEIVIATPGRLIDML-EAQHTNLRRVTYLVLDEADRMLDM 189 (347)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~iiv~T~~~l~~~~-~~~~~~~~~~~~iIvDE~h~~~~~ 189 (347)
+...... +...+|.... ......+... .+++++|++.+.... ......-..++.+|+||+|.+.+.
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 8654443 5556665542 3333333332 799999999988742 122233356899999999986554
No 176
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.58 E-value=1.2e-06 Score=69.88 Aligned_cols=128 Identities=23% Similarity=0.359 Sum_probs=83.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhc---CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEE
Q 019041 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALK---GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (347)
Q Consensus 28 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~---~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (347)
+|.....|+++.-.... ++ -+|+.|.++...+.+ ++|.+.++-+|.|||.+ +.|++..+..+. +.-+.
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEE
Confidence 46666666766655553 44 789999999998876 47899999999999965 667776666532 44566
Q ss_pred EEcCcHHHHHHHHHHHHH-hccCCCceEEEE--ECCCCCchh----hH----hhcCCCcEEEeChHHHHHHH
Q 019041 105 VLAPTRELAVQIQEEALK-FGSRAGIRSTCI--YGGAPKGPQ----IR----DLRRGVEIVIATPGRLIDML 165 (347)
Q Consensus 105 il~p~~~l~~q~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~----~~----~~~~~~~iiv~T~~~l~~~~ 165 (347)
+++| ++|.+|..+.+.. ++.-.+-++..+ ......... +. .......|+++||+.++++.
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 7777 4688888887764 333233333333 222222111 11 12235789999999987653
No 177
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.56 E-value=5.4e-07 Score=78.81 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=66.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (347)
-++|.|.+|||||++++.. +..+... ..+..+++++++.+|...+.+.+..-.. +
T Consensus 3 v~~I~G~aGTGKTvla~~l-~~~l~~~-----~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~----------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNL-AKELQNS-----EEGKKVLYLCGNHPLRNKLREQLAKKYN--P----------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHH-HHHhhcc-----ccCCceEEEEecchHHHHHHHHHhhhcc--c-----------------
Confidence 4789999999999865543 3333111 1266789999999999888888865320 0
Q ss_pred hhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-------ChHHHHHHHhh
Q 019041 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-------FEPQIRKIVTQ 201 (347)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-------~~~~~~~~~~~ 201 (347)
......+..+..+.............+++|||||||++.... ....+..+++.
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001222333434333322222345679999999999987732 23555565554
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.52 E-value=5.9e-07 Score=80.56 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=67.4
Q ss_pred HHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 41 VIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 41 ~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
.+-..++..|..-|..|+...+.+.-.++++|+|+|||.+......+.+... ...+|+++|+..-++|+.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~-------~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQH-------AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhc-------CCceEEEcccchhHHHHHHHH
Confidence 5556788899999999999999999999999999999986554444333332 667999999999999999999
Q ss_pred HHhccCCCceEEEEEC
Q 019041 121 LKFGSRAGIRSTCIYG 136 (347)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (347)
.+. |+++..+..
T Consensus 475 h~t----gLKVvRl~a 486 (935)
T KOG1802|consen 475 HKT----GLKVVRLCA 486 (935)
T ss_pred Hhc----CceEeeeeh
Confidence 875 455554443
No 179
>PRK10536 hypothetical protein; Provisional
Probab=98.51 E-value=3.5e-06 Score=68.55 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=81.4
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHH-------HHH
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV-------QIQ 117 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~-------q~~ 117 (347)
.++...+..|..++..+.++..+++.||+|+|||+.+...+++.+.... -.++++.-|.....+ ...
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~------~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD------VDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC------eeEEEEeCCCCCchhhhCcCCCCHH
Confidence 4566778899999999988889999999999999987777776554321 224555545433211 011
Q ss_pred HHHHHhccCCCceEEEEECCCCCchhhHhh--cCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHH
Q 019041 118 EEALKFGSRAGIRSTCIYGGAPKGPQIRDL--RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQI 195 (347)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~ 195 (347)
+.+..|....--....+.+. .....+ .....|-+.... +++...+ +-++||+|||+.+ -...+
T Consensus 129 eK~~p~~~pi~D~L~~~~~~----~~~~~~~~~~~~~Iei~~l~----ymRGrtl---~~~~vIvDEaqn~----~~~~~ 193 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRLGA----SFMQYCLRPEIGKVEIAPFA----YMRGRTF---ENAVVILDEAQNV----TAAQM 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCh----HHHHHHHHhccCcEEEecHH----HhcCCcc---cCCEEEEechhcC----CHHHH
Confidence 11111100000000000010 111111 112344454432 2222222 2479999999987 45678
Q ss_pred HHHHhhcCCCccEEEEEe
Q 019041 196 RKIVTQIRPDRQTLYWSA 213 (347)
Q Consensus 196 ~~~~~~~~~~~~~i~lsa 213 (347)
..++..+...++++++.-
T Consensus 194 k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 194 KMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHhhcCCCCEEEEeCC
Confidence 888888877776665543
No 180
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.49 E-value=6.2e-07 Score=79.79 Aligned_cols=65 Identities=25% Similarity=0.163 Sum_probs=53.9
Q ss_pred CCcHHHHhhHhhhhcC-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 121 (347)
.+.+-|..++...... .-.+++||+|+|||.+....+.+.+.+ +.++|++.|+..-++.+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHHhc
Confidence 6788899999887776 457899999999999877777777766 6789999999999988888543
No 181
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.49 E-value=1.3e-06 Score=81.70 Aligned_cols=67 Identities=22% Similarity=0.149 Sum_probs=54.3
Q ss_pred CCCcHHHHhhHhhhhcC-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 48 VEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
..+.+.|..++..++.. ...+++||+|+|||.+....+.+.+.. +.++|+++|+..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~--------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR--------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc--------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 36799999999988876 678999999999997665544444433 56899999999999998888876
No 182
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=98.48 E-value=3.5e-05 Score=73.97 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=56.1
Q ss_pred CCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
..|++-|++++.. ....++|.|++|||||.+...-+...+..... ...++|+++-|+.-+.++.+.+.+...
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v----~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENA----SPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC----ChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4689999999975 35689999999999998877666655543211 145799999999999999999887643
No 183
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.48 E-value=4e-06 Score=77.70 Aligned_cols=142 Identities=19% Similarity=0.208 Sum_probs=89.6
Q ss_pred cHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCce
Q 019041 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (347)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 130 (347)
.++|+.++...+.++-.++.|++|+|||.+.. .++..+.+... ....++++.+||-.-+..+.+.+.......++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~---~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcC---CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 58999999998999999999999999997543 33333322110 113578899999998888887776533322210
Q ss_pred EEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC------CCCCCcccEEEEecchhhhccCChHHHHHHHhhcCC
Q 019041 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ------HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (347)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~------~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (347)
..... ....-..|.++++...... ..+...++++||||+-++ -...+..+++.+++
T Consensus 230 -----------~~~~~---~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~ 291 (615)
T PRK10875 230 -----------DEQKK---RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPP 291 (615)
T ss_pred -----------hhhhh---cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhccc
Confidence 00000 1112234555555432111 112335689999999976 34566677778888
Q ss_pred CccEEEEEee
Q 019041 205 DRQTLYWSAT 214 (347)
Q Consensus 205 ~~~~i~lsaT 214 (347)
.+++|++.-.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888888765
No 184
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.47 E-value=3.1e-06 Score=78.24 Aligned_cols=143 Identities=19% Similarity=0.175 Sum_probs=88.3
Q ss_pred cHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCce
Q 019041 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (347)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 130 (347)
.++|+.++...+.++-+++.|++|+|||.+.. .++..+...... ....++++.+||-.-+..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 37899999999999999999999999997543 333333221110 012579999999888887777765532222110
Q ss_pred EEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhc------CCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCC
Q 019041 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA------QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (347)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (347)
... .....+-..|.++++..... ...+...+++|||||+-++ -...+..+++.+++
T Consensus 224 ----------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 ----------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPP 285 (586)
T ss_pred ----------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCC
Confidence 000 00112234555555543221 1122345899999999976 34456677777777
Q ss_pred CccEEEEEee
Q 019041 205 DRQTLYWSAT 214 (347)
Q Consensus 205 ~~~~i~lsaT 214 (347)
..++|++.-.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 8888877654
No 185
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.46 E-value=1.7e-06 Score=80.17 Aligned_cols=140 Identities=20% Similarity=0.225 Sum_probs=90.6
Q ss_pred CCCCCCcHHHHhhHhhhhc----CCcEEEEcCCCCchhHHhHHHHHHhhhcCC-----------C-------cc------
Q 019041 45 LGFVEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQP-----------R-------LV------ 96 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~-----------~-------~~------ 96 (347)
+.| +|++.|...+..++. ..++++..|||+|||++.+...+++..... . ..
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 445 789999988877654 578999999999999988877776542211 0 00
Q ss_pred ----------CCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCC----------------------------
Q 019041 97 ----------QGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGA---------------------------- 138 (347)
Q Consensus 97 ----------~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 138 (347)
..+-+++.+-+-|-.-+.|+.+++++..-... ...+....
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vk--mtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~ 174 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVK--MTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSR 174 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCc--eEEeecchhhccCHHHhhhhcchhhhhHHHhhcccc
Confidence 00145777877888889999999988644422 11111110
Q ss_pred ---------------------CCchh---------------hHhhcCCCcEEEeChHHHHHHHhcCCCCCC-cccEEEEe
Q 019041 139 ---------------------PKGPQ---------------IRDLRRGVEIVIATPGRLIDMLEAQHTNLR-RVTYLVLD 181 (347)
Q Consensus 139 ---------------------~~~~~---------------~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~-~~~~iIvD 181 (347)
-+-++ -+.+...++||++-+.+|.+...+....++ .-.+||+|
T Consensus 175 ~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfD 254 (945)
T KOG1132|consen 175 SCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFD 254 (945)
T ss_pred cccccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccccEEEEe
Confidence 00000 033445789999999999877655443222 35799999
Q ss_pred cchhhh
Q 019041 182 EADRML 187 (347)
Q Consensus 182 E~h~~~ 187 (347)
|||.+.
T Consensus 255 EAHNiE 260 (945)
T KOG1132|consen 255 EAHNIE 260 (945)
T ss_pred ccccHH
Confidence 999753
No 186
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.44 E-value=4.6e-06 Score=79.34 Aligned_cols=128 Identities=20% Similarity=0.126 Sum_probs=81.0
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.++ .+++.|++++..+..++.+++.|++|+|||.+ +..++..+.... +...+++++||-.-+..+.+..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~~---- 388 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEVT---- 388 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHhc----
Confidence 454 79999999999998888999999999999964 344444444321 0156888899977766443322
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcC-----CCCCCcccEEEEecchhhhccCChHHHHHHH
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-----HTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 199 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~ 199 (347)
+... .|.++++...... .......+++|+||++++. ...+..++
T Consensus 389 ---g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll 437 (720)
T TIGR01448 389 ---GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLL 437 (720)
T ss_pred ---CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHH
Confidence 2110 1233332211100 0112357899999999873 34456666
Q ss_pred hhcCCCccEEEEEee
Q 019041 200 TQIRPDRQTLYWSAT 214 (347)
Q Consensus 200 ~~~~~~~~~i~lsaT 214 (347)
+.++...+++++.-+
T Consensus 438 ~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 438 AALPDHARLLLVGDT 452 (720)
T ss_pred HhCCCCCEEEEECcc
Confidence 777777788877655
No 187
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=98.43 E-value=3.3e-05 Score=74.17 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=56.3
Q ss_pred CCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
..|++-|++++.. ....++|.|++|||||.+...-+...+..... ...++|+++.|+.-+.++.+.+.+...
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v----~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENA----SPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC----CHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4689999999975 45689999999999999877666655543211 145799999999999999998887643
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=98.40 E-value=2e-06 Score=56.62 Aligned_cols=53 Identities=30% Similarity=0.347 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
+.-++|.+|+|+|||.+.+-.+...+..... .+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~----~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARAD----PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CCCeEEEECCCHHHHHHHHHHH
Confidence 4446669999999997666555555432111 1567999999999999888877
No 189
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.38 E-value=4.6e-06 Score=74.21 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=62.6
Q ss_pred EEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCc-----eEEEEECCCCCch
Q 019041 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGI-----RSTCIYGGAPKGP 142 (347)
Q Consensus 68 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 142 (347)
++.++||||||++.+..++....+. =...|+.|....+.+-....+. +...- ..+.+.+......
T Consensus 1 lf~matgsgkt~~ma~lil~~y~kg-------yr~flffvnq~nilekt~~nft---d~~s~kylf~e~i~~~d~~i~ik 70 (812)
T COG3421 1 LFEMATGSGKTLVMAGLILECYKKG-------YRNFLFFVNQANILEKTKLNFT---DSVSSKYLFSENININDENIEIK 70 (812)
T ss_pred CcccccCCChhhHHHHHHHHHHHhc-------hhhEEEEecchhHHHHHHhhcc---cchhhhHhhhhhhhcCCceeeee
Confidence 3578999999998777777766553 2357888887777665444332 11100 0011111111111
Q ss_pred hh---HhhcCCCcEEEeChHHHHHHHhcCCC------CCCccc-EEEEecchhhhc
Q 019041 143 QI---RDLRRGVEIVIATPGRLIDMLEAQHT------NLRRVT-YLVLDEADRMLD 188 (347)
Q Consensus 143 ~~---~~~~~~~~iiv~T~~~l~~~~~~~~~------~~~~~~-~iIvDE~h~~~~ 188 (347)
.+ ........|+++|.+.|...+-+... ++.+.. +++-||+||+-.
T Consensus 71 kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 71 KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 11 11223578999999999877644332 233334 455599999753
No 190
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.24 E-value=3.2e-05 Score=73.98 Aligned_cols=121 Identities=21% Similarity=0.159 Sum_probs=74.9
Q ss_pred CCcHHHHhhHhhhhcC-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 019041 49 EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 127 (347)
.+++.|+.++..+..+ +-+++.|++|+|||.+ +-.+...+... +.++++++|+-.-+..+.+. .
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~~-------g~~V~~~ApTg~Aa~~L~~~-------~ 416 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEAA-------GYRVIGAALSGKAAEGLQAE-------S 416 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHhC-------CCeEEEEeCcHHHHHHHHhc-------c
Confidence 6899999999998874 6789999999999964 43444443332 56799999987665544321 1
Q ss_pred CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc-CCCc
Q 019041 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDR 206 (347)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~ 206 (347)
++.. .|.+++...+......+...++|||||+-++... .+..++... ....
T Consensus 417 g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~ 468 (744)
T TIGR02768 417 GIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGA 468 (744)
T ss_pred CCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCC
Confidence 2211 1333332222222333567899999999977433 333444422 3456
Q ss_pred cEEEEE
Q 019041 207 QTLYWS 212 (347)
Q Consensus 207 ~~i~ls 212 (347)
+++++.
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 666666
No 191
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=98.24 E-value=0.00015 Score=69.94 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=55.2
Q ss_pred CCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
..|++-|++++.. ...+++|.|+.|||||.+...-+...+..... ...++|+++-|+.-+..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i----~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV----APWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC----CHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 4689999999975 35689999999999998877666666543211 13479999999999999888887654
No 192
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.16 E-value=1.4e-05 Score=67.33 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=87.8
Q ss_pred HCCCCCCcHHHHhhHhhhhcCC--cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH
Q 019041 44 KLGFVEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~--~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 121 (347)
.+|+......|+.+++.++... -+.+.++.|||||+.++.+.+.+....+. -.++++-=|+..+-+.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~d------ 291 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGED------ 291 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccc------
Confidence 4788888899999999998864 57788999999999999888888766543 3356766676555321
Q ss_pred HhccCCCceEEEEECCCCCchh----------hHhhcCCCcEEEeChHHHHHHHhcCCCCCC----------cccEEEEe
Q 019041 122 KFGSRAGIRSTCIYGGAPKGPQ----------IRDLRRGVEIVIATPGRLIDMLEAQHTNLR----------RVTYLVLD 181 (347)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~----------~~~~iIvD 181 (347)
+..+-|.. ++++ ...+....+ ++.+.+...+....+.+. .-.+||+|
T Consensus 292 ---------IGfLPG~e-EeKm~PWmq~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIID 358 (436)
T COG1875 292 ---------IGFLPGTE-EEKMGPWMQAIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIID 358 (436)
T ss_pred ---------cCcCCCch-hhhccchHHHHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEEe
Confidence 11111111 1100 000000000 112333333333322211 12589999
Q ss_pred cchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 182 EADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 182 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
||+.+ ....+..++.+..+..+++++.-.
T Consensus 359 EaQNL----TpheikTiltR~G~GsKIVl~gd~ 387 (436)
T COG1875 359 EAQNL----TPHELKTILTRAGEGSKIVLTGDP 387 (436)
T ss_pred hhhcc----CHHHHHHHHHhccCCCEEEEcCCH
Confidence 99987 677899999999888877766543
No 193
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.13 E-value=5.9e-05 Score=73.47 Aligned_cols=126 Identities=21% Similarity=0.136 Sum_probs=78.8
Q ss_pred CCCCCCcHHHHhhHhhhhcCC-cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 45 LGFVEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.|+ .|++-|++++..+..++ .+++.|+.|+|||.+ +-.+...+... +.+++.++||-.-+..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~-------G~~V~~~ApTGkAA~~L~e----- 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA-------GYEVRGAALSGIAAENLEG----- 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEecCcHHHHHHHhh-----
Confidence 344 79999999999988854 578999999999974 44444443332 6679999998766544322
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc-
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI- 202 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~- 202 (347)
..++. -.|..++...+......+...++|||||+-++.. ..+..+++..
T Consensus 409 --~tGi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~ 458 (988)
T PRK13889 409 --GSGIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAA 458 (988)
T ss_pred --ccCcc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhh
Confidence 11221 1133444322222333456678999999997643 3444555433
Q ss_pred CCCccEEEEEee
Q 019041 203 RPDRQTLYWSAT 214 (347)
Q Consensus 203 ~~~~~~i~lsaT 214 (347)
....+++++.-+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 356677777655
No 194
>PRK04296 thymidine kinase; Provisional
Probab=98.11 E-value=1.1e-05 Score=63.91 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=55.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
.-.++.+|+|+|||..++ ..+.++... +.+++++.|...--. .........++..
T Consensus 3 ~i~litG~~GsGKTT~~l-~~~~~~~~~-------g~~v~i~k~~~d~~~----~~~~i~~~lg~~~------------- 57 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELL-QRAYNYEER-------GMKVLVFKPAIDDRY----GEGKVVSRIGLSR------------- 57 (190)
T ss_pred EEEEEECCCCCHHHHHHH-HHHHHHHHc-------CCeEEEEeccccccc----cCCcEecCCCCcc-------------
Confidence 346889999999996544 444444332 557887755211100 0001111112111
Q ss_pred HhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEe
Q 019041 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (347)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsa 213 (347)
..+.+...+.++..+.. .-.++++||+||+|.+. ...+..+++.+.+....+.+++
T Consensus 58 ------~~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 58 ------EAIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred ------cceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEe
Confidence 01223445555555544 23468999999998642 2335555555433333444443
No 195
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.11 E-value=1.8e-05 Score=69.37 Aligned_cols=74 Identities=16% Similarity=0.026 Sum_probs=48.3
Q ss_pred CCCCCCcHHHHhhHhhhhc----CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 45 LGFVEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
+.+...+|.|-.-...+.+ +.++++.+|+|+|||.+.+..+++.....+.. -.+.++.+-|..=++...+++
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~----~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE----HRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc----cceEEEecCcchHHHHHHHHH
Confidence 5666778888776655443 56899999999999987776666665554421 234566655555555555555
Q ss_pred HH
Q 019041 121 LK 122 (347)
Q Consensus 121 ~~ 122 (347)
+.
T Consensus 88 ~~ 89 (755)
T KOG1131|consen 88 KR 89 (755)
T ss_pred HH
Confidence 44
No 196
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=98.07 E-value=0.00012 Score=71.92 Aligned_cols=137 Identities=20% Similarity=0.121 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHhhhhc-CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
+++.........++ .|++-|..++..+.. ++-+++.|+.|+|||.+ +-.+...+... +.+++.++|+-.-
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~-------G~~V~g~ApTgkA 437 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA-------GYRVVGGALAGKA 437 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEcCcHHH
Confidence 34444444333333 799999999998754 46689999999999964 44444444332 6689999998766
Q ss_pred HHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCCh
Q 019041 113 AVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFE 192 (347)
Q Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~ 192 (347)
+..+.+. .|+.. .|..++..........+...+++||||+.++. .
T Consensus 438 A~~L~e~-------~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~ 482 (1102)
T PRK13826 438 AEGLEKE-------AGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----S 482 (1102)
T ss_pred HHHHHHh-------hCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----H
Confidence 6544322 23222 13333221111222345567899999999763 3
Q ss_pred HHHHHHHhhcC-CCccEEEEEee
Q 019041 193 PQIRKIVTQIR-PDRQTLYWSAT 214 (347)
Q Consensus 193 ~~~~~~~~~~~-~~~~~i~lsaT 214 (347)
..+..+++... ...+++++.-+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 44555555553 46677777655
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.06 E-value=1.3e-05 Score=69.35 Aligned_cols=123 Identities=21% Similarity=0.095 Sum_probs=75.9
Q ss_pred CcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCc
Q 019041 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGI 129 (347)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 129 (347)
|++-|.+++.. ..++++|.|+.|||||.+.+..++..+..... ...++|++++|+..+.++.+.+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~----~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV----PPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS----TGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccC----ChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57889999988 77799999999999999877766666655421 1457999999999999999888875332210
Q ss_pred eEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCC-C-CcccEEEEecch
Q 019041 130 RSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN-L-RRVTYLVLDEAD 184 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-~-~~~~~iIvDE~h 184 (347)
.. ...............+.|+|.+.+...+...... . -.-.+-+.|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 0000001111123578999999886544322211 1 123466777766
No 198
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.05 E-value=8.4e-05 Score=68.39 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=104.8
Q ss_pred CCCCHHHHHHHHH--C-CCCCCcHHHHhhHhhhhc--CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEE
Q 019041 32 ANFPDYCLEVIAK--L-GFVEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (347)
Q Consensus 32 ~~l~~~~~~~l~~--~-~~~~~~~~Q~~~i~~~~~--~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil 106 (347)
+-+-|.+.+.++- . |+..+++--.+.+....+ |-.+|+...+|.|||+-.+..+--.+... ..+.+|+|
T Consensus 245 iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT------~AKtVL~i 318 (1387)
T KOG1016|consen 245 IFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHT------KAKTVLVI 318 (1387)
T ss_pred eeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcC------ccceEEEE
Confidence 3456666666653 2 343444444444444333 45688999999999974433222223332 26789999
Q ss_pred cCcHHHHHHHHHHHHHhccCC---------CceEEEEECCCCCchh----hHhhcCCCcEEEeChHHHHHHHhcCCC---
Q 019041 107 APTRELAVQIQEEALKFGSRA---------GIRSTCIYGGAPKGPQ----IRDLRRGVEIVIATPGRLIDMLEAQHT--- 170 (347)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~----~~~~~~~~~iiv~T~~~l~~~~~~~~~--- 170 (347)
+|-..| ..|..++..|.... .+.+..+.++...-.. +..+.....|++.-++.+.-+......
T Consensus 319 vPiNTl-QNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~g 397 (1387)
T KOG1016|consen 319 VPINTL-QNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKG 397 (1387)
T ss_pred EehHHH-HHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccC
Confidence 998777 66788887775542 3566777766544322 334455678888888877544332100
Q ss_pred ----C-----------------------------CCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecch
Q 019041 171 ----N-----------------------------LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 171 ----~-----------------------------~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
. -...|++|+||-|++.+- ...+.-.++.++..+++++....+..
T Consensus 398 rpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~--~A~iS~aLk~IrtrRRiVLTGYPLQN 475 (1387)
T KOG1016|consen 398 RPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNI--TAEISMALKAIRTRRRIVLTGYPLQN 475 (1387)
T ss_pred CccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccc--hHHHHHHHHHhhhceeEEEecccccc
Confidence 0 124589999999987653 23344455555555556665566544
No 199
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.04 E-value=4.5e-05 Score=71.17 Aligned_cols=282 Identities=17% Similarity=0.129 Sum_probs=150.3
Q ss_pred HHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH-hccCCCceE
Q 019041 53 IQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRAGIRS 131 (347)
Q Consensus 53 ~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~ 131 (347)
+-..++..+..+..+++-+.||.|||.-+.--+++.+.++... ...-+.+--|++-.+..+.+.+.+ -+...+-.+
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g---~~~na~v~qprrisaisiaerva~er~e~~g~tv 458 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG---ASFNAVVSQPRRISAISLAERVANERGEEVGETC 458 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc---ccccceeccccccchHHHHHHHHHhhHHhhcccc
Confidence 3344455566677899999999999998888888888776431 122345555877777776666543 211111111
Q ss_pred EEEECCCCCchhhHhhcC-CCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcCCCccEE
Q 019041 132 TCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTL 209 (347)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i 209 (347)
.+ +. ........ ..-|..+|.+-+++....... ...++|+||.|...-.+ |...+.+-+.-.-+..+++
T Consensus 459 gy-----~v-Rf~Sa~prpyg~i~fctvgvllr~~e~glr---g~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~ 529 (1282)
T KOG0921|consen 459 GY-----NV-RFDSATPRPYGSIMFCTVGVLLRMMENGLR---GISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVV 529 (1282)
T ss_pred cc-----cc-cccccccccccceeeeccchhhhhhhhccc---ccccccchhhhhhccchHHHHHHHHhhhccchhhhhh
Confidence 00 00 01111111 246889999999888776544 47789999999643221 2222222111112344566
Q ss_pred EEEeecchhHH--------------------HHHHHhcCCCeEEEecccccccccccce-eEEEec---------chhcc
Q 019041 210 YWSATWPREVE--------------------TLARQFLRNPYKVIIGSLELKANQSINQ-VVEVVT---------EAEKY 259 (347)
Q Consensus 210 ~lsaT~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~ 259 (347)
++|||+..+.. .+....+..+.................. .....+ .++++
T Consensus 530 lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 530 LMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred hhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhh
Confidence 77777544311 1111111111111110000000000000 000000 00000
Q ss_pred c----------------cHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh-------CCCCceeecCCCCHHHH
Q 019041 260 N----------------SMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM-------DGWPALSIHGDKNQSER 316 (347)
Q Consensus 260 ~----------------~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~-------~~~~~~~~~~~~~~~~r 316 (347)
. ..+.+.+...+....-.+-++||.+.=.....+...|.. ..++....|+.....+.
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhh
Confidence 0 001112222222222235688888888777777776643 24577888998888888
Q ss_pred HHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 317 DWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 317 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
..+.+....|..++|++|.+++.-+.+.++
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~ 719 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDV 719 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecce
Confidence 888888888999999999998888776653
No 200
>PRK06526 transposase; Provisional
Probab=98.04 E-value=6.7e-05 Score=62.11 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=21.6
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
+..+.++++.||+|+|||..+...+...+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 34568999999999999986665444443
No 201
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.04 E-value=2.3e-05 Score=72.75 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=77.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH----h----ccCCCceEEEEEC
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK----F----GSRAGIRSTCIYG 136 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~----~----~~~~~~~~~~~~~ 136 (347)
-++=|.|.||+|||++|+-.+.+.-..- +-.+.+|+||+.++-+-+...... | -.....+.....
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~Y------G~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~- 147 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKY------GLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD- 147 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHh------CceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec-
Confidence 4788999999999999987666543332 144789999999987663333221 1 111122222221
Q ss_pred CCCCchhhHhhcCCCcEEEeChHHHHHH------HhcCCCCCC---------------cccEEEEecchhhhccCChHHH
Q 019041 137 GAPKGPQIRDLRRGVEIVIATPGRLIDM------LEAQHTNLR---------------RVTYLVLDEADRMLDMGFEPQI 195 (347)
Q Consensus 137 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~------~~~~~~~~~---------------~~~~iIvDE~h~~~~~~~~~~~ 195 (347)
.............+.+++.+.+.+..- +.+...... .--++|+||-|.+... ...+
T Consensus 148 -~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~ 224 (985)
T COG3587 148 -EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTY 224 (985)
T ss_pred -hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHH
Confidence 111111112223467777777666443 110000000 1137999999998653 1222
Q ss_pred HHHHhhcCCCccEEEEEeecchhHH
Q 019041 196 RKIVTQIRPDRQTLYWSATWPREVE 220 (347)
Q Consensus 196 ~~~~~~~~~~~~~i~lsaT~~~~~~ 220 (347)
.. +..+ .+.-++-++||+.+...
T Consensus 225 ~~-i~~l-~pl~ilRfgATfkd~y~ 247 (985)
T COG3587 225 GA-IKQL-NPLLILRFGATFKDEYN 247 (985)
T ss_pred HH-HHhh-CceEEEEecccchhhhc
Confidence 22 2333 23447789999766533
No 202
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.99 E-value=4.7e-05 Score=71.69 Aligned_cols=137 Identities=21% Similarity=0.155 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcH
Q 019041 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (347)
Q Consensus 32 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 110 (347)
..+.|...+. -+..++.-|++|+...+.. ...++.|=+|+|||.+....+-..+.. ++++|+.+-|.
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~--------gkkVLLtsyTh 723 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL--------GKKVLLTSYTH 723 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc--------CCeEEEEehhh
Confidence 3455555553 2347788999999877765 467889999999997654433333332 67888888887
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCCCchh-----------------hHhhcCCCcEEEeChHHHHHHHhcCCCCCC
Q 019041 111 ELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ-----------------IRDLRRGVEIVIATPGRLIDMLEAQHTNLR 173 (347)
Q Consensus 111 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 173 (347)
.-+..+...++.+ ++.+.-+..+...-+. ...+.....|+.+|---+.+.+. ...
T Consensus 724 sAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R 795 (1100)
T KOG1805|consen 724 SAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNR 795 (1100)
T ss_pred HHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hcc
Confidence 7777777777664 3333333333222222 22344567888888655544433 234
Q ss_pred cccEEEEecchhhhc
Q 019041 174 RVTYLVLDEADRMLD 188 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~ 188 (347)
.||+.|+|||-++..
T Consensus 796 ~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 796 QFDYCIIDEASQILL 810 (1100)
T ss_pred ccCEEEEcccccccc
Confidence 599999999997643
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.98 E-value=9.1e-05 Score=54.90 Aligned_cols=20 Identities=35% Similarity=0.265 Sum_probs=12.8
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 019041 63 KGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (347)
+++.+++.||+|+|||.+.-
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ----EEEEE-TTSSHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHH
Confidence 45678999999999997543
No 204
>PRK08181 transposase; Validated
Probab=97.88 E-value=0.00028 Score=58.85 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=58.1
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCc
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
.+++++++.||+|+|||..+...+.+.+.. +.+++++ +...|+.++......
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--------g~~v~f~-~~~~L~~~l~~a~~~------------------- 155 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIEN--------GWRVLFT-RTTDLVQKLQVARRE------------------- 155 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHc--------CCceeee-eHHHHHHHHHHHHhC-------------------
Confidence 357899999999999997554433333332 4455555 445555544322100
Q ss_pred hhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcCCCccEEEEEeecch
Q 019041 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
.+.+.+... +...+++|+||++...... ....+..++........+|+.|.-+..
T Consensus 156 --------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 156 --------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred --------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 022222222 2457899999999654332 233455555443333456666555443
No 205
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.86 E-value=0.00012 Score=58.23 Aligned_cols=129 Identities=21% Similarity=0.187 Sum_probs=68.3
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc-C-cHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA-P-TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~-p-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (347)
-+++.||||+|||.+..-.+.....+ +.++.+++ . .|.=+.+ .++.+....++.+........
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~--------~~~v~lis~D~~R~ga~e---QL~~~a~~l~vp~~~~~~~~~---- 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK--------GKKVALISADTYRIGAVE---QLKTYAEILGVPFYVARTESD---- 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEEEESTSSTHHHH---HHHHHHHHHTEEEEESSTTSC----
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc--------cccceeecCCCCCccHHH---HHHHHHHHhccccchhhcchh----
Confidence 46899999999998766555444333 33444444 2 3333333 233332334554433221110
Q ss_pred hHhhcCCCcEEEeChHH-HHHHHhcCCCCCCcccEEEEecchhhhcc-CChHHHHHHHhhcCCCccEEEEEeecchhHHH
Q 019041 144 IRDLRRGVEIVIATPGR-LIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVET 221 (347)
Q Consensus 144 ~~~~~~~~~iiv~T~~~-l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~ 221 (347)
+.. +.+.++.. ..+++++|++|-+-+.... .....+..++....+..-.+.++||.......
T Consensus 68 --------------~~~~~~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 68 --------------PAEIAREALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp --------------HHHHHHHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred --------------hHHHHHHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 111 22222210 1245789999999765332 23456667777776777788999998765444
Q ss_pred HHHH
Q 019041 222 LARQ 225 (347)
Q Consensus 222 ~~~~ 225 (347)
.+..
T Consensus 132 ~~~~ 135 (196)
T PF00448_consen 132 QALA 135 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 206
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.81 E-value=6.9e-05 Score=61.75 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=32.0
Q ss_pred CCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecch
Q 019041 170 TNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 170 ~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
...+.+..+|+||||.+....+ ..+++.++......+.++.+.-+.+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCcceEEEEechhhhhHHHH-HHHHHHHhccccceEEEEEcCChhh
Confidence 3456689999999998765433 3555666666666677777776544
No 207
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.79 E-value=0.00013 Score=70.67 Aligned_cols=154 Identities=18% Similarity=0.083 Sum_probs=91.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCC----------CccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEE
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQP----------RLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTC 133 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~----------~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 133 (347)
|+.+++.-.+|.|||..-+...+....... .......+-+|||||. ++..||.+++.+..... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 467788889999999866544433321110 0000114568999996 66799999999876654 55555
Q ss_pred EECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC--------------CCC------cccEEEEecchhhhccCChH
Q 019041 134 IYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--------------NLR------RVTYLVLDEADRMLDMGFEP 193 (347)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--------------~~~------~~~~iIvDE~h~~~~~~~~~ 193 (347)
..|-......-..-.-.+|||+|||+.|..-+..... ..+ .|=-|++|||+.+.. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 4443322111111122589999999998765433211 111 123589999997654 334
Q ss_pred HHHHHHhhcCCCccEEEEEeecchhHHHH
Q 019041 194 QIRKIVTQIRPDRQTLYWSATWPREVETL 222 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~i~lsaT~~~~~~~~ 222 (347)
...++..++ +.....++|+||-..+.++
T Consensus 530 ~~a~M~~rL-~~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 530 AAAEMVRRL-HAINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHh-hhhceeeecCCchhhhhhh
Confidence 445555544 4556789999976654443
No 208
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00075 Score=59.27 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=70.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc-C-cHHHHHHHHHHHHHhccCCCceEEEEECCCCCch
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA-P-TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~-p-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
..+++.||||+|||.+..-.+......... .+.++.+++ . .+.-+.++ +..++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~----~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~--------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD----KSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA--------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc----CCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe---------
Confidence 468899999999998766544332221100 144555554 2 23333332 44444444543311
Q ss_pred hhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcCCC-ccEEEEEeecchh-H
Q 019041 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPD-RQTLYWSATWPRE-V 219 (347)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~-~~~i~lsaT~~~~-~ 219 (347)
+.+++.+...+.. ..++++|++|++.+..... ....+..++....+. ..++.+|||.... +
T Consensus 239 ------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 239 ------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred ------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 1234445444432 3568999999999765321 223455555555433 4678999997643 3
Q ss_pred HHHHHHh
Q 019041 220 ETLARQF 226 (347)
Q Consensus 220 ~~~~~~~ 226 (347)
...+..+
T Consensus 303 ~~~~~~~ 309 (388)
T PRK12723 303 KEIFHQF 309 (388)
T ss_pred HHHHHHh
Confidence 3344444
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.77 E-value=0.0013 Score=57.11 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=78.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (347)
++.+.+.||||.|||.+.+-.+........ .....||-+.+-=+.. .+.++.+++-.++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-----~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-----KKKVAIITTDTYRIGA--VEQLKTYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-----CcceEEEEeccchhhH--HHHHHHHHHHhCCce------------
Confidence 678899999999999887665555542211 1334455555433321 233444444445433
Q ss_pred hHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcCCCccEEEEEeecch-hHHH
Q 019041 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPR-EVET 221 (347)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lsaT~~~-~~~~ 221 (347)
.++-++.-|...+. .+.++++|.||=+-+-.... ....+..++....+....+.+|||... +++.
T Consensus 264 ---------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 264 ---------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 45556766666555 35667999999887643322 345555555555455567889998654 3455
Q ss_pred HHHHhcC
Q 019041 222 LARQFLR 228 (347)
Q Consensus 222 ~~~~~~~ 228 (347)
.+..|..
T Consensus 331 i~~~f~~ 337 (407)
T COG1419 331 IIKQFSL 337 (407)
T ss_pred HHHHhcc
Confidence 5555543
No 210
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.75 E-value=0.00037 Score=52.57 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHH
Q 019041 64 GRDLIGIAETGSGKTLS 80 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (347)
+..+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57899999999999964
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=97.70 E-value=0.00076 Score=58.06 Aligned_cols=130 Identities=24% Similarity=0.285 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc---HHHHHHHHHHHHHhccCCCceEEEEECCCCCc
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT---RELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
.-+++.|++|+|||.+....+ ..+... +.+++++... ..-.+|+...... .++.+.....+.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~~-------g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~--- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKKN-------GFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGA--- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHHc-------CCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCC---
Confidence 357899999999997655433 333332 4456665532 3445565544444 344332211111
Q ss_pred hhhHhhcCCCcEEEeChHH-HHHHHhcCCCCCCcccEEEEecchhhhcc-CChHHHHHHHhhcCCCccEEEEEeecchhH
Q 019041 142 PQIRDLRRGVEIVIATPGR-LIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREV 219 (347)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~-l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~ 219 (347)
.|.. +.+.+.... ..++++|++|.+.++... .....+..+.+...+...++.++|+...+.
T Consensus 206 ---------------dp~~v~~~ai~~~~--~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~ 268 (336)
T PRK14974 206 ---------------DPAAVAYDAIEHAK--ARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDA 268 (336)
T ss_pred ---------------CHHHHHHHHHHHHH--hCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhH
Confidence 0111 122221111 135789999999987532 244556666666667777888899876655
Q ss_pred HHHHHHh
Q 019041 220 ETLARQF 226 (347)
Q Consensus 220 ~~~~~~~ 226 (347)
...++.+
T Consensus 269 ~~~a~~f 275 (336)
T PRK14974 269 VEQAREF 275 (336)
T ss_pred HHHHHHH
Confidence 5444444
No 212
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.67 E-value=0.00026 Score=67.40 Aligned_cols=70 Identities=17% Similarity=0.068 Sum_probs=55.0
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|++-|++++.. ....++|.|++|||||.+....+...+..... ...++|+++.|+.-+.++.+.+.+..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v----~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC----CHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478999999976 35689999999999999877666666543221 14579999999999999999888753
No 213
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.63 E-value=9.3e-05 Score=57.33 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=51.2
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCC--CceeecCCCCHHHHHHHHHHHhcCCCCEEEEec--ccccCCCCCc
Q 019041 277 GSRILIFTETKKGCDQVTRQLRMDGW--PALSIHGDKNQSERDWVLAEFRSGRSPIMTATD--VAARGLGRIT 345 (347)
Q Consensus 277 ~~~~lvf~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~--~~~~Gidip~ 345 (347)
.+++|||++|.+..+.+.+.++..+. ...++.. +..++..+++.|..++-.||+++. .+.+|||+|+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 47999999999999999999986542 2233332 245678899999999989999998 9999999996
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.63 E-value=0.0002 Score=53.62 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
+..+++.||+|+|||..+.. ++..+... ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~-------~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP-------GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC-------CCCEEEECCEEcc
Confidence 46789999999999975432 33332221 1246777766544
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.0024 Score=55.60 Aligned_cols=129 Identities=20% Similarity=0.261 Sum_probs=68.9
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC--cH-HHHHHHHHHHHHhccCCCceEEEEECCCCCc
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP--TR-ELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p--~~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
+.+.+.||+|+|||.+....+... ... +.++.++.. .+ .-++|+..... ..++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~~~-------GkkVglI~aDt~RiaAvEQLk~yae----~lgipv---------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-HGK-------KKTVGFITTDHSRIGTVQQLQDYVK----TIGFEV---------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-HHc-------CCcEEEEecCCcchHHHHHHHHHhh----hcCCcE----------
Confidence 467899999999998665544433 221 445555543 22 34455443322 223222
Q ss_pred hhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcCCCccEEEEEeecch-hH
Q 019041 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPR-EV 219 (347)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lsaT~~~-~~ 219 (347)
+...++..+.+.+..... -.++++|++|-+=+..... .-..+..++....+...++.+|||... ..
T Consensus 300 -----------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 300 -----------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred -----------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 123356666554432211 1248899999987644321 233344555544455456678887554 44
Q ss_pred HHHHHHhc
Q 019041 220 ETLARQFL 227 (347)
Q Consensus 220 ~~~~~~~~ 227 (347)
...++.+-
T Consensus 368 ~~i~~~F~ 375 (436)
T PRK11889 368 IEIITNFK 375 (436)
T ss_pred HHHHHHhc
Confidence 55555543
No 216
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.59 E-value=0.0095 Score=63.25 Aligned_cols=135 Identities=13% Similarity=0.177 Sum_probs=81.2
Q ss_pred CCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 019041 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 126 (347)
.+++-|++++..++.. +-.++.++.|+|||.+ +-.++..+... +.++++++|+-.-+..+.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~-------G~~V~~lAPTgrAA~~L~e~~g~---- 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ-------GYEIQIITAGSLSAQELRQKIPR---- 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc-------CCeEEEEeCCHHHHHHHHHHhcc----
Confidence 6889999999998875 5788999999999963 44444443332 67899999998877665554321
Q ss_pred CCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc-CCC
Q 019041 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPD 205 (347)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~ 205 (347)
...+++ .....+. . ..-..|.+.|. .....+...++|||||+-++. ...+..+++.. ...
T Consensus 497 ---~A~Ti~------~~l~~l~-~-~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 497 ---LASTFI------TWVKNLF-N-DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred ---hhhhHH------HHHHhhc-c-cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 000000 0000000 0 01112222222 122334568899999999873 44555666554 357
Q ss_pred ccEEEEEee
Q 019041 206 RQTLYWSAT 214 (347)
Q Consensus 206 ~~~i~lsaT 214 (347)
.+++++.-+
T Consensus 558 arvVlvGD~ 566 (1960)
T TIGR02760 558 SKLILLNDS 566 (1960)
T ss_pred CEEEEEcCh
Confidence 788888766
No 217
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.56 E-value=0.00069 Score=63.54 Aligned_cols=140 Identities=21% Similarity=0.155 Sum_probs=86.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCC-ccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPR-LVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
-+++.-..|-|||...+..++..-..... .......-.|++||. .+..||..++.+......+.+...+| .....
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g-r~kd~-- 229 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG-RTKDK-- 229 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc-ccccc--
Confidence 57889999999998766655544333220 001124557888886 55588888887666666677777776 21111
Q ss_pred HhhcCCCcEEEeChHHHHH-HHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchh
Q 019041 145 RDLRRGVEIVIATPGRLID-MLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPRE 218 (347)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~-~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~ 218 (347)
....+++|+++||..+.. .+. .-.+-.+|+||+|.+.+.... .......+ .......+|+||...
T Consensus 230 -~el~~~dVVltTy~il~~~~l~-----~i~w~Riildea~~ikn~~tq--~~~a~~~L-~a~~RWcLtgtPiqn 295 (674)
T KOG1001|consen 230 -SELNSYDVVLTTYDILKNSPLV-----KIKWLRIVLDEAHTIKNKDTQ--IFKAVCQL-DAKYRWCLTGTPIQN 295 (674)
T ss_pred -chhcCCceEEeeHHHhhccccc-----ceeEEEEEeccccccCCcchH--hhhhheee-ccceeeeecCChhhh
Confidence 122357899999988774 221 134678999999987665422 22222222 344567889987553
No 218
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00071 Score=58.90 Aligned_cols=166 Identities=18% Similarity=0.172 Sum_probs=80.3
Q ss_pred cccCCCCHHHHHHHHH-CC----CCC---CcHHHHhhHhhh-----------hcCCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 29 FQEANFPDYCLEVIAK-LG----FVE---PTPIQAQGWPMA-----------LKGRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 29 ~~~~~l~~~~~~~l~~-~~----~~~---~~~~Q~~~i~~~-----------~~~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
+...|+++.+.+.+-+ .. ... .+.+....+... .++..+++.||||+|||.+....+....
T Consensus 83 L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 83 LFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred HHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5567899998888754 21 111 122333332221 1256789999999999987655444333
Q ss_pred hcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCC
Q 019041 90 SAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH 169 (347)
Q Consensus 90 ~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~ 169 (347)
.... ..++.+++.- ..-.--.+.++.++...++.+.. +.++..+...+.
T Consensus 163 ~~~G------~~~V~lit~D-~~R~ga~EqL~~~a~~~gv~~~~---------------------~~~~~~l~~~l~--- 211 (374)
T PRK14722 163 MRFG------ASKVALLTTD-SYRIGGHEQLRIFGKILGVPVHA---------------------VKDGGDLQLALA--- 211 (374)
T ss_pred HhcC------CCeEEEEecc-cccccHHHHHHHHHHHcCCceEe---------------------cCCcccHHHHHH---
Confidence 2211 2345555422 21101122333333333433322 222323322222
Q ss_pred CCCCcccEEEEecchhhhccC-ChHHHHHHHhhcCCCccEEEEEeecchhH-HHHHHHh
Q 019041 170 TNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREV-ETLARQF 226 (347)
Q Consensus 170 ~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lsaT~~~~~-~~~~~~~ 226 (347)
.+.+.++++||.+=...... ....+..+.....+...++.++||..... ...++.|
T Consensus 212 -~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 212 -ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred -HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 23457899999997542221 12222222222223345788999975543 3344444
No 219
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.53 E-value=0.00046 Score=65.39 Aligned_cols=78 Identities=23% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 019041 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 127 (347)
..|++-|++++.. ...+++|.|+.|||||.+.+..+...+..... ...++|+++.++..+..+.+.+.......
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~----~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQA----QPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC----CHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 4799999999965 34578999999999998766655554433211 14579999999999999998887644323
Q ss_pred CceE
Q 019041 128 GIRS 131 (347)
Q Consensus 128 ~~~~ 131 (347)
++.+
T Consensus 269 ~v~v 272 (684)
T PRK11054 269 DITA 272 (684)
T ss_pred CcEE
Confidence 3333
No 220
>PRK12377 putative replication protein; Provisional
Probab=97.53 E-value=0.0011 Score=54.70 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=27.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHH
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 119 (347)
.++++.||+|+|||..+.. +...+... +..+++ ++...+..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~~~-------g~~v~~-i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLLAK-------GRSVIV-VTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc-------CCCeEE-EEHHHHHHHHHHH
Confidence 5799999999999975443 33343331 334444 4545665554433
No 221
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.45 E-value=0.00087 Score=64.19 Aligned_cols=69 Identities=17% Similarity=0.071 Sum_probs=53.9
Q ss_pred CcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
|++-|++++.. ...+++|.|++|||||.+.+..+...+..... ...++|+++.++.-+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~----~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY----KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68899999875 45689999999999998877666666543211 14579999999999999999887654
No 222
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.0027 Score=56.85 Aligned_cols=128 Identities=23% Similarity=0.244 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhh-hcCCCccCCCCCEEEEEcC--cHHHHHHHHHHHHHhccCCCceEEEEECCCCC
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHV-SAQPRLVQGEGPIVLVLAP--TRELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~~~~~~lil~p--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
++.+++.+|||+|||.+....+.... ... +.++.++.- .+.-+. +.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-------g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~-------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-------KKKVALITLDTYRIGAV---EQLKTYAKIMGIPVE-------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CCeEEEEECCccHHHHH---HHHHHHHHHhCCceE--------
Confidence 45788999999999986665444333 221 445655552 222111 223333222333221
Q ss_pred chhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhc-CCCccEEEEEeecch-
Q 019041 141 GPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQI-RPDRQTLYWSATWPR- 217 (347)
Q Consensus 141 ~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~lsaT~~~- 217 (347)
.+.+++.+...+.. +.++++|+||.+-...... ....+..++... .+....+.++||...
T Consensus 283 -------------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 283 -------------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred -------------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 12234444444432 2358999999986532211 223455555522 233457889998764
Q ss_pred hHHHHHHHh
Q 019041 218 EVETLARQF 226 (347)
Q Consensus 218 ~~~~~~~~~ 226 (347)
.+......+
T Consensus 346 ~l~~~~~~f 354 (424)
T PRK05703 346 DLKDIYKHF 354 (424)
T ss_pred HHHHHHHHh
Confidence 344444444
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.42 E-value=0.003 Score=51.91 Aligned_cols=43 Identities=28% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCcccEEEEecchhhhccCChH-HHHHHHhh-cCCCccEEEEEee
Q 019041 172 LRRVTYLVLDEADRMLDMGFEP-QIRKIVTQ-IRPDRQTLYWSAT 214 (347)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~-~~~~~~~~-~~~~~~~i~lsaT 214 (347)
+..++++|+||++......+.. .+..++.. ......+++.|--
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3468899999999765333332 34444443 2234556665544
No 224
>PHA02533 17 large terminase protein; Provisional
Probab=97.40 E-value=0.0025 Score=58.64 Aligned_cols=123 Identities=13% Similarity=0.012 Sum_probs=74.9
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.|.|+|..++..+..++..++..+=..|||.+....++......+ +..+++++|+..-+..+.+.++.+....+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~------~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK------DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 588999999988766666788899999999876654544433322 55899999999998888877765433221
Q ss_pred c--eEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc
Q 019041 129 I--RSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (347)
Q Consensus 129 ~--~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (347)
- ....... ....-.+.+++.|.+.|.+. ....-.+.+++++||+|...+
T Consensus 133 ~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 133 DFLQPGIVEW----NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred HHhhcceeec----CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC
Confidence 1 1000000 01111223455665554321 111223467899999997543
No 225
>PRK06921 hypothetical protein; Provisional
Probab=97.39 E-value=0.0021 Score=53.80 Aligned_cols=44 Identities=23% Similarity=0.143 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 115 (347)
+.++++.|++|+|||..+. ++...+.... +..++++. ...+..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~~------g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRKK------GVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhhc------CceEEEEE-HHHHHHH
Confidence 5679999999999997543 3344433310 34566654 3444433
No 226
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.0033 Score=48.73 Aligned_cols=90 Identities=26% Similarity=0.248 Sum_probs=54.3
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
.=.++.+|+.||||...+-.+ .+... .+.++++..|..-- +.+...+..+.|...
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~-~~~~~-------~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~---- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRA-RRYKE-------AGMKVLVFKPAIDT-------------RYGVGKVSSRIGLSS---- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHH-HHHHH-------cCCeEEEEeccccc-------------ccccceeeeccCCcc----
Confidence 345789999999997544333 33222 27789999885322 112233333333322
Q ss_pred HhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhh
Q 019041 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (347)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (347)
.-++|-....+...+........ .+++.+|||+-+
T Consensus 60 ------~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~ 94 (201)
T COG1435 60 ------EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF 94 (201)
T ss_pred ------cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC
Confidence 24566677777777765444322 889999999953
No 227
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.36 E-value=0.004 Score=47.83 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=23.8
Q ss_pred EEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
+++.||+|+|||..+...+... .. .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~-------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT-------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh-------cCCEEEEEECCcch
Confidence 5789999999997544333332 22 15567777665444
No 228
>PRK08727 hypothetical protein; Validated
Probab=97.35 E-value=0.0016 Score=53.41 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=25.4
Q ss_pred CcccEEEEecchhhhccC-ChHHHHHHHhhcC-CCccEEEEEeecchhH
Q 019041 173 RRVTYLVLDEADRMLDMG-FEPQIRKIVTQIR-PDRQTLYWSATWPREV 219 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~-~~~~~i~lsaT~~~~~ 219 (347)
.+.+++|+||+|.+.... ....+..++.... ...++++.|..++..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 346799999999775433 2233444444332 2334555555444433
No 229
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.33 E-value=0.00044 Score=60.82 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=40.3
Q ss_pred CCcHHHHhhHhhh------hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHH
Q 019041 49 EPTPIQAQGWPMA------LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (347)
Q Consensus 49 ~~~~~Q~~~i~~~------~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 114 (347)
.|++-|+++++.+ .++.++++.|+-|+|||.+ +-.+...+.. .+..+++++||-.-|.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l-~~~i~~~~~~-------~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL-IKAIIDYLRS-------RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH-HHHHHHHhcc-------ccceEEEecchHHHHH
Confidence 3678899998888 6678999999999999973 2233333322 1556788778755443
No 230
>PRK05642 DNA replication initiation factor; Validated
Probab=97.33 E-value=0.002 Score=52.94 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=26.7
Q ss_pred cccEEEEecchhhhcc-CChHHHHHHHhhcCCCccEEEEEeec
Q 019041 174 RVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATW 215 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lsaT~ 215 (347)
+.+++++|++|..... .+...+..+++......+.+++|++.
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~ 139 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 4679999999976543 23455666666554444456666664
No 231
>PTZ00293 thymidine kinase; Provisional
Probab=97.29 E-value=0.003 Score=50.24 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 110 (347)
|.=-++.||+++|||.-.+ ..+.+.... +.+++++.|..
T Consensus 4 G~i~vi~GpMfSGKTteLL-r~i~~y~~a-------g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELM-RLVKRFTYS-------EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHH-HHHHHHHHc-------CCceEEEEecc
Confidence 3345789999999996434 333333321 56788888853
No 232
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.29 E-value=0.0011 Score=54.87 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=36.9
Q ss_pred CCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcC
Q 019041 21 DVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQ 92 (347)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~ 92 (347)
-.|.....|+++++++-+.+.+.. ...=++|.+|||||||.+ +.+++..+-++
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 345667778888888877774332 223489999999999975 55666666554
No 233
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0086 Score=54.34 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=79.4
Q ss_pred cccccCCCCHHHHHHHHH-CCC-CCCcHHHHh---hHhh---------hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcC
Q 019041 27 RIFQEANFPDYCLEVIAK-LGF-VEPTPIQAQ---GWPM---------ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQ 92 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~-~~~-~~~~~~Q~~---~i~~---------~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~ 92 (347)
..+.+.|+++.+.+.|.. ..- ......... .+.. +..++.+.+.||+|+|||.++...+.......
T Consensus 299 ~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~ 378 (559)
T PRK12727 299 ELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQH 378 (559)
T ss_pred HHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 336667899999888854 211 111111111 1111 22357888999999999976554443332221
Q ss_pred CCccCCCCCEEEEEc-C-cHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC
Q 019041 93 PRLVQGEGPIVLVLA-P-TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT 170 (347)
Q Consensus 93 ~~~~~~~~~~~lil~-p-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~ 170 (347)
.+.++.++. . .+.-+. +.+..++...++.+.. +.+...+...+..
T Consensus 379 ------~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~---------------------a~d~~~L~~aL~~--- 425 (559)
T PRK12727 379 ------APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE---------------------ADSAESLLDLLER--- 425 (559)
T ss_pred ------CCCceEEEecccccccHH---HHHHHhhcccCceeEe---------------------cCcHHHHHHHHHH---
Confidence 123455544 2 232222 2233333333332211 1123344444432
Q ss_pred CCCcccEEEEecchhhhccC-ChHHHHHHHhhcCCCccEEEEEeecch-hHHHHHHHh
Q 019041 171 NLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPR-EVETLARQF 226 (347)
Q Consensus 171 ~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lsaT~~~-~~~~~~~~~ 226 (347)
+.++++|+||.+-...... ....+..+ ........++.++++... .+...++.+
T Consensus 426 -l~~~DLVLIDTaG~s~~D~~l~eeL~~L-~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 426 -LRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred -hccCCEEEecCCCcchhhHHHHHHHHHH-HHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 3458999999997542211 11122222 222234567788888643 344444443
No 234
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0015 Score=56.30 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
.+.|+.+|+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 478999999999997544
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0018 Score=53.79 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=34.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 121 (347)
+++++++.||+|+|||..+...+...+ .. +.++++ ++..+++.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-------g~sv~f-~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA-------GISVLF-ITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-------CCeEEE-EEHHHHHHHHHHHHh
Confidence 578999999999999986665554444 31 445444 577778776665554
No 236
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.26 E-value=0.0038 Score=63.86 Aligned_cols=64 Identities=27% Similarity=0.287 Sum_probs=44.5
Q ss_pred CCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHH
Q 019041 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 116 (347)
.+++.|++++..++.. +.++++|..|+|||.+. -.++..+.... ...+.+++.++|+-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~---e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLP---ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHh---hccCceEEEEechHHHHHHH
Confidence 7899999999998864 67899999999999753 22333222100 01256788899987766554
No 237
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.22 E-value=0.00071 Score=62.75 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=94.6
Q ss_pred CCcHHHHhhHhhhhcC----------CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALKG----------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~----------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 118 (347)
.++..|.+++-..++. -.+++-...|.||-.+.+-.++....+ +.+++|++.-+..|--...+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk-------GRKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK-------GRKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc-------ccceeEEEEeccccccchhh
Confidence 6788899988765542 236676677777655444444544443 36789999999999877777
Q ss_pred HHHHhccCCCceEEEEECCCCC---chhhHhhcCCCcEEEeChHHHHHHHhcCCC-----------C-CCc-ccEEEEec
Q 019041 119 EALKFGSRAGIRSTCIYGGAPK---GPQIRDLRRGVEIVIATPGRLIDMLEAQHT-----------N-LRR-VTYLVLDE 182 (347)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-----------~-~~~-~~~iIvDE 182 (347)
.++..+.. ++.+..+..-.-. .++... ..-.|+++|+..|..--..... + -.+ =++||+||
T Consensus 337 DL~DigA~-~I~V~alnK~KYakIss~en~n--~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDE 413 (1300)
T KOG1513|consen 337 DLRDIGAT-GIAVHALNKFKYAKISSKENTN--TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDE 413 (1300)
T ss_pred chhhcCCC-CccceehhhcccccccccccCC--ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehh
Confidence 77776443 4655544221100 000001 1246999999777543221100 0 112 26999999
Q ss_pred chhhhcc---------CChHHHHHHHhhcCCCccEEEEEeec
Q 019041 183 ADRMLDM---------GFEPQIRKIVTQIRPDRQTLYWSATW 215 (347)
Q Consensus 183 ~h~~~~~---------~~~~~~~~~~~~~~~~~~~i~lsaT~ 215 (347)
||...+- ..+..+..+.+++ +..++++-|||-
T Consensus 414 CHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASATG 454 (1300)
T KOG1513|consen 414 CHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASATG 454 (1300)
T ss_pred hhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeeccC
Confidence 9986541 1456666776666 677899999993
No 238
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.0053 Score=45.27 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.7
Q ss_pred EEEEcCCCCchhHHh
Q 019041 67 LIGIAETGSGKTLSY 81 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~ 81 (347)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999643
No 239
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.20 E-value=0.0051 Score=53.03 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 116 (347)
++++++.||||+|||..+... ...+... +..++++ +...+..++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aI-a~~l~~~-------g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCI-AKELLDR-------GKSVIYR-TADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHH-HHHHHHC-------CCeEEEE-EHHHHHHHH
Confidence 578999999999999854433 3333321 4456665 445555443
No 240
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.20 E-value=0.0014 Score=66.72 Aligned_cols=124 Identities=19% Similarity=0.129 Sum_probs=79.6
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.+++-|+++|.. .+++++|.|+.|||||.+.+-.++..+.... .-.+++++|-|++-+.++.+.+.+.....
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~-----~~~~il~~tFt~~aa~e~~~ri~~~l~~~- 72 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGV-----DIDRLLVVTFTNAAAREMKERIEEALQKA- 72 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----CHhhEEEEeccHHHHHHHHHHHHHHHHHH-
Confidence 368899999974 6889999999999999987777776665431 12469999999999999888877532211
Q ss_pred ceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCC--cccEEEEecchh
Q 019041 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLR--RVTYLVLDEADR 185 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~--~~~~iIvDE~h~ 185 (347)
+. .........+.+..-...-|+|.+++...+.+.+...- +.++=|.||...
T Consensus 73 ~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 00011111122222356789999999765543332111 234556888874
No 241
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.18 E-value=0.0039 Score=50.60 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=57.7
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (347)
.+++.||+|+|||.. +.++...+.... .+.+++++.. ..........+.. +
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~-----~~~~v~y~~~-~~f~~~~~~~~~~-----~----------------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH-----PGKRVVYLSA-EEFIREFADALRD-----G----------------- 86 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC-----TTS-EEEEEH-HHHHHHHHHHHHT-----T-----------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc-----ccccceeecH-HHHHHHHHHHHHc-----c-----------------
Confidence 479999999999984 444444444321 1556777643 3444433333332 0
Q ss_pred hhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcC-CCccEEEEEeecch
Q 019041 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIR-PDRQTLYWSATWPR 217 (347)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~-~~~~~i~lsaT~~~ 217 (347)
..+.+.+. +...+++++|++|.+.... +...+..++..+. .+.++++.|..++.
T Consensus 87 -----------~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 87 -----------EIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp -----------SHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred -----------cchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 12333332 2358899999999876532 3444555554443 34566666655444
No 242
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.18 E-value=0.0059 Score=48.28 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=32.6
Q ss_pred EEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
+++.||+|+|||..++-.+...+.+ +.++++++. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6899999999997555444444433 556888765 45566666666665
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=97.15 E-value=0.022 Score=47.57 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=28.1
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 114 (347)
+..+.++++.||+|+|||..+...+...... +..++++. ...+..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~--------G~~v~~~~-~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA--------GIKVRFTT-AADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc--------CCeEEEEe-HHHHHH
Confidence 4467899999999999997555443332222 44566653 334443
No 244
>PRK08116 hypothetical protein; Validated
Probab=97.13 E-value=0.0043 Score=52.04 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=25.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 117 (347)
.+++.|++|+|||..+. ++...+... +..++++ +...++..+.
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEE-EHHHHHHHHH
Confidence 49999999999997544 344444432 3345554 4455544433
No 245
>PRK06893 DNA replication initiation factor; Validated
Probab=97.13 E-value=0.0018 Score=53.06 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=26.8
Q ss_pred CcccEEEEecchhhhcc-CChHHHHHHHhhcCC-CccEEEEEeecc
Q 019041 173 RRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRP-DRQTLYWSATWP 216 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~-~~~~i~lsaT~~ 216 (347)
.+.+++++||+|.+... .+...+..++..... ..+++.+|++..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 35789999999987532 233345555544433 345667777643
No 246
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.12 E-value=0.00056 Score=52.77 Aligned_cols=125 Identities=22% Similarity=0.199 Sum_probs=52.7
Q ss_pred EEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhh
Q 019041 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDL 147 (347)
Q Consensus 68 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (347)
++.|+-|-|||.+..+.+...+... ..+++|-.|+.+-+..+.+.+..-....+.+...... ........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~-------~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG-------KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc-------CceEEEecCCHHHHHHHHHHHHhhccccccccccccc---cccccccc
Confidence 4789999999965444433333221 2468999999998887776665443333332200000 00000001
Q ss_pred cCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecch
Q 019041 148 RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 148 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
.....|-+..|+.+... ....|++|||||=.+ -...+..++.. ...+.+|.|...
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~----~~~vv~stTi~G 125 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRR----FPRVVFSTTIHG 125 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBSS
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhh----CCEEEEEeeccc
Confidence 11345556666554432 124589999999875 34455555533 346777888543
No 247
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.11 E-value=0.0081 Score=57.51 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=15.7
Q ss_pred EEEEcCCCCchhHHhHHHHHHhh
Q 019041 67 LIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
++|.|+||+|||.+.-. ++..+
T Consensus 784 LYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 35999999999976544 33444
No 248
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0032 Score=56.55 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhHHhHH
Q 019041 66 DLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~ 83 (347)
.+++.||.|+|||.++-+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999975443
No 249
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.09 E-value=0.0056 Score=55.69 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=27.2
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHH
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 119 (347)
..+++.||+|+|||..+. ++...+.... .+.+++++ +...+..++...
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~-----~~~~v~yi-~~~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKN-----PNAKVVYV-TSEKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhC-----CCCeEEEE-EHHHHHHHHHHH
Confidence 358999999999997543 3333333321 14456666 444444443333
No 250
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.013 Score=53.18 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 019041 65 RDLIGIAETGSGKTLSYLLP 84 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~ 84 (347)
+.++++||.|+|||.++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 46899999999999765543
No 251
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.08 E-value=0.0074 Score=62.65 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=74.8
Q ss_pred CCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 019041 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 126 (347)
.+++.|++++..++.+ +-++++|..|+|||.+ +-.+...+.... ...+.+++.++||-.-+..+. .
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~---~~~~~~V~glAPTgrAAk~L~----e---- 1034 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP---ESERPRVVGLGPTHRAVGEMR----S---- 1034 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhh---cccCceEEEECCcHHHHHHHH----h----
Confidence 6899999999998875 5789999999999964 333443332211 012457888999876665433 2
Q ss_pred CCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHh----cCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc
Q 019041 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLE----AQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (347)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~----~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (347)
.|+.. .|.++++.... .........+++||||+-++.. ..+..+++..
T Consensus 1035 ~Gi~A------------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~~ 1086 (1747)
T PRK13709 1035 AGVDA------------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALI 1086 (1747)
T ss_pred cCcch------------------------hhHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHhh
Confidence 12211 13333332111 0111123458999999997633 3444555554
Q ss_pred CC-CccEEEEEee
Q 019041 203 RP-DRQTLYWSAT 214 (347)
Q Consensus 203 ~~-~~~~i~lsaT 214 (347)
.. .++++++.-+
T Consensus 1087 ~~~garvVLVGD~ 1099 (1747)
T PRK13709 1087 AAGGGRAVSSGDT 1099 (1747)
T ss_pred hcCCCEEEEecch
Confidence 43 5677777655
No 252
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.08 E-value=0.0032 Score=54.46 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=25.9
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEe
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsa 213 (347)
..+++|+||+|.+........+..+++......++++.|.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4679999999987333344556666666655665555443
No 253
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=97.07 E-value=0.003 Score=57.17 Aligned_cols=91 Identities=22% Similarity=0.138 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHCCCCCCc-------HHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE
Q 019041 33 NFPDYCLEVIAKLGFVEPT-------PIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (347)
Q Consensus 33 ~l~~~~~~~l~~~~~~~~~-------~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li 105 (347)
+-++-++..|....-..++ +-|.+++.. -+++-.+|+|..|||||.+++-.....+.......+ +..+||
T Consensus 189 ~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~--~k~vlv 265 (747)
T COG3973 189 GRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ--AKPVLV 265 (747)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc--cCceEE
Confidence 3456666788765444443 344444422 346678999999999998877666666655543332 334999
Q ss_pred EcCcHHHHHHHHHHHHHhccC
Q 019041 106 LAPTRELAVQIQEEALKFGSR 126 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~ 126 (347)
+.|++.+.+.+.+.+-.++..
T Consensus 266 l~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred EcCcHHHHHHHHHhchhhccC
Confidence 999999999888888776443
No 254
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=97.06 E-value=0.0051 Score=55.02 Aligned_cols=144 Identities=13% Similarity=0.222 Sum_probs=78.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH-HHHHHHHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE-LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
..++.|+.|||||.+.+..++..+...+ .+.+++++-++.. +...+...+.......++....-...... .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 3678999999999988877777766641 1567888888776 55555566665444444321111111100 11
Q ss_pred HhhcC-CCcEEEeCh-HHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcC--CCccEEEEEeecchhHH
Q 019041 145 RDLRR-GVEIVIATP-GRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR--PDRQTLYWSATWPREVE 220 (347)
Q Consensus 145 ~~~~~-~~~iiv~T~-~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~lsaT~~~~~~ 220 (347)
. +.. +..|++... +...+. . ....++++.+|||..+... .+..+...++ .....+++|.+|.....
T Consensus 76 ~-~~~~g~~i~f~g~~d~~~~i-k----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 76 K-ILNTGKKFIFKGLNDKPNKL-K----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLH 145 (396)
T ss_pred E-ecCCCeEEEeecccCChhHh-h----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCcc
Confidence 1 112 445666554 222221 1 1233689999999987443 3333333333 12224788888765433
Q ss_pred HHHHHh
Q 019041 221 TLARQF 226 (347)
Q Consensus 221 ~~~~~~ 226 (347)
-+.+.+
T Consensus 146 w~~~~f 151 (396)
T TIGR01547 146 WVKKRF 151 (396)
T ss_pred HHHHHH
Confidence 333333
No 255
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.05 E-value=0.01 Score=53.10 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=30.4
Q ss_pred ccEEEEecchhhhc-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHh
Q 019041 175 VTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF 226 (347)
Q Consensus 175 ~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~ 226 (347)
.++||+|.+-+... ...-..+..+.....+..-++.++|+........++.+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 48899999944321 11333445555555566667778887765544444443
No 256
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.03 E-value=0.0039 Score=51.02 Aligned_cols=20 Identities=35% Similarity=0.275 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 019041 63 KGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (347)
.+..+++.||+|+|||..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999997544
No 257
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.02 E-value=0.0073 Score=49.68 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
.++++.||+|+|||..+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 578999999999997543
No 258
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.012 Score=50.79 Aligned_cols=41 Identities=17% Similarity=0.067 Sum_probs=30.0
Q ss_pred CCcHHHHhhHhhhhcCC----cEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 49 EPTPIQAQGWPMALKGR----DLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~----~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
.++|+|...+..+...+ ..+++||.|.|||..+. .+...+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~-~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE-RLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH-HHHHHHc
Confidence 45899999998877643 58899999999996443 3444443
No 259
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=97.00 E-value=0.0032 Score=53.36 Aligned_cols=72 Identities=22% Similarity=0.144 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCC-cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH
Q 019041 33 NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (347)
Q Consensus 33 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~ 111 (347)
.-.+.....|.++| .+++.|...+-.+...+ |+++++.||||||. .+-++...+.. ..+++.+=.+.+
T Consensus 143 ~k~~ltl~dli~~g--t~~~~~a~~L~~av~~r~NILisGGTGSGKTT-lLNal~~~i~~--------~eRvItiEDtaE 211 (355)
T COG4962 143 PKIKLTLLDLIIFG--TMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-LLNALSGFIDS--------DERVITIEDTAE 211 (355)
T ss_pred ccccccHHHHHHcC--CcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-HHHHHHhcCCC--------cccEEEEeehhh
Confidence 33444445666555 67888888777666654 99999999999996 34344433333 347899888888
Q ss_pred HHHH
Q 019041 112 LAVQ 115 (347)
Q Consensus 112 l~~q 115 (347)
|--+
T Consensus 212 Lql~ 215 (355)
T COG4962 212 LQLA 215 (355)
T ss_pred hccC
Confidence 7433
No 260
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.00 E-value=0.0056 Score=56.11 Aligned_cols=71 Identities=21% Similarity=0.122 Sum_probs=50.5
Q ss_pred HHHHhhHhhhhc-----C----CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 52 PIQAQGWPMALK-----G----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 52 ~~Q~~~i~~~~~-----~----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
|+|+.++..+.. + +.+++..|=|-|||......++..+.-.+ ..+..+++.++++.-+....+.+.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g----~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG----EPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC----ccCceEEEEeCCHHHHHHHHHHHHH
Confidence 567777666542 2 35788999999999766655555443321 1267899999999999999998887
Q ss_pred hccC
Q 019041 123 FGSR 126 (347)
Q Consensus 123 ~~~~ 126 (347)
+...
T Consensus 77 ~i~~ 80 (477)
T PF03354_consen 77 MIEA 80 (477)
T ss_pred HHHh
Confidence 6554
No 261
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.0039 Score=57.17 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=23.0
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEE
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ls 212 (347)
.++.++|+||+|.+....+ +.+.+.++.-++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998754332 23334444444444444444
No 262
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.0037 Score=58.92 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=22.8
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEE
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ls 212 (347)
..+.++||||+|.+....+. .+.+.++.-.....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeEEEEEE
Confidence 45789999999988554333 3344455443344444444
No 263
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.94 E-value=0.021 Score=50.84 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=62.7
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC--cHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP--TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (347)
-+.++|++|+|||.+..-.+. .+... +.++++++. .+.-+.+| ++.++...++.+.....+......
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~~-------G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQRK-------GFKPCLVCADTFRAGAFDQ---LKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHC-------CCCEEEEcCcccchhHHHH---HHHHhhccCCeEEeecCCCCHHHH
Confidence 578999999999976654443 23321 445666653 34433333 333333345544332222110000
Q ss_pred hHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcCCCccEEEEEeecchhHHHH
Q 019041 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREVETL 222 (347)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~ 222 (347)
. .+.+.. +. -..+++||+|=+-+..... .-..+..+.+...+...++.++|+........
T Consensus 171 ~-------------~~~l~~-~~-----~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 171 A-------------SEGVEK-FK-----KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred H-------------HHHHHH-HH-----hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 0 001111 11 1346788888776543211 23344444444445555677777766544444
Q ss_pred HHHh
Q 019041 223 ARQF 226 (347)
Q Consensus 223 ~~~~ 226 (347)
++.+
T Consensus 232 a~~F 235 (429)
T TIGR01425 232 AKAF 235 (429)
T ss_pred HHHH
Confidence 4444
No 264
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.93 E-value=0.0086 Score=53.73 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=23.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
.+++.||+|+|||..+ .++...+.... .+.+++++..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~-----~~~~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENN-----PNAKVVYVSS 174 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCcEEEEEH
Confidence 5789999999999754 33444433321 1456777643
No 265
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.93 E-value=0.0066 Score=49.74 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=23.7
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhcCCCcc-EEEEEeec
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ-TLYWSATW 215 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~-~i~lsaT~ 215 (347)
..+++++||+|.+... ....+..++........ +++++++.
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~ 131 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPA 131 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4678999999976432 23344445544333333 46666664
No 266
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.023 Score=52.04 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
+.++++||.|+|||.++-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999975543
No 267
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.93 E-value=0.0054 Score=51.73 Aligned_cols=65 Identities=23% Similarity=0.096 Sum_probs=37.1
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 37 YCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 37 ~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
++.+.|...|...-.+.-.+++.-+..|..+++.|++|+|||......+...+... +.++++++-
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-------g~~vl~iS~ 67 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH-------GVRVGTISL 67 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc-------CceEEEEEc
Confidence 34445554343333333333334456678899999999999975444444333321 456788764
No 268
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.89 E-value=0.0027 Score=51.95 Aligned_cols=87 Identities=24% Similarity=0.333 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCC-CCchhhHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 98 GEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGA-PKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 98 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
.+++.+||||.+..-+..+.+.++.+.. .+..+..+++.. ...+.+..+. ...+|.||||+++..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 3478999999999889888888887731 133455555544 3334444444 358999999999999999999999999
Q ss_pred cEEEEecchh
Q 019041 176 TYLVLDEADR 185 (347)
Q Consensus 176 ~~iIvDE~h~ 185 (347)
.+||+|--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998873
No 269
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.89 E-value=0.0067 Score=54.89 Aligned_cols=49 Identities=20% Similarity=0.103 Sum_probs=29.0
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
..+++.|++|+|||... .++...+.... .+.+++++.+ ..+...+...+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~-----~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF-----SDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHH
Confidence 35889999999999643 34444333211 1456777655 55555544444
No 270
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.87 E-value=0.021 Score=51.68 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=23.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
..+++.||+|+|||..+. ++...+.+.. .+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~-----~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNE-----PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhC-----CCCeEEEEEH
Confidence 358999999999997543 3333333321 1456777754
No 271
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.85 E-value=0.037 Score=46.26 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC-c--HHHHHHHHHHHHHhccCCCceEEEEECCCCC
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-T--RELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p-~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
+..+.+.+++|+|||..+...+.. +... +.++.++.. . .....||...... .++.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~-l~~~-------~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~------- 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ-FHGK-------KKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA------- 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH-HHHc-------CCeEEEEecCCCCHHHHHHHHHHhhh----cCceEEe-------
Confidence 467899999999999765544333 2221 334444443 2 2455665544332 2322211
Q ss_pred chhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhcc-CChHHHHHHHhhcCCCccEEEEEeecch-h
Q 019041 141 GPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPR-E 218 (347)
Q Consensus 141 ~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lsaT~~~-~ 218 (347)
..+++.+...+.... ...+++++++|-+=+.... .....+..++....+...++.+|||... .
T Consensus 136 --------------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 136 --------------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred --------------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 123444444332211 1235899999999764321 1233344444444454456789998654 4
Q ss_pred HHHHHHHh
Q 019041 219 VETLARQF 226 (347)
Q Consensus 219 ~~~~~~~~ 226 (347)
....++.+
T Consensus 201 ~~~~~~~f 208 (270)
T PRK06731 201 MIEIITNF 208 (270)
T ss_pred HHHHHHHh
Confidence 55555554
No 272
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.84 E-value=0.022 Score=53.77 Aligned_cols=160 Identities=18% Similarity=0.125 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCC--cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc
Q 019041 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (347)
Q Consensus 32 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~--~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 109 (347)
...++..-..+......+...-|.+.+..+++.+ -+++.|.=|=|||.+.-+++........ ..+++|..|+
T Consensus 197 ~~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~------~~~iiVTAP~ 270 (758)
T COG1444 197 PPLDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG------SVRIIVTAPT 270 (758)
T ss_pred CCCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC------CceEEEeCCC
Confidence 4455555566777777677777777777777653 5889999999999876655533322211 3479999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhcc
Q 019041 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM 189 (347)
Q Consensus 110 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~ 189 (347)
.+-++.+.+.+.+-....|.+............. .......|=+.+|.... ..-+++|||||=.+
T Consensus 271 ~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~--~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI--- 335 (758)
T COG1444 271 PANVQTLFEFAGKGLEFLGYKRKVAPDALGEIRE--VSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI--- 335 (758)
T ss_pred HHHHHHHHHHHHHhHHHhCCccccccccccceee--ecCCceeEEeeCcchhc----------ccCCEEEEehhhcC---
Confidence 9998887777665444444332211111000000 00011224444443322 11679999999865
Q ss_pred CChHHHHHHHhhcCCCccEEEEEeecch
Q 019041 190 GFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
-.+.+..++... +.+++|.|...
T Consensus 336 -plplL~~l~~~~----~rv~~sTTIhG 358 (758)
T COG1444 336 -PLPLLHKLLRRF----PRVLFSTTIHG 358 (758)
T ss_pred -ChHHHHHHHhhc----CceEEEeeecc
Confidence 455666666554 47888888643
No 273
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.84 E-value=0.067 Score=50.02 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=46.6
Q ss_pred CcHHHHhhHhhhh---cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 50 PTPIQAQGWPMAL---KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 50 ~~~~Q~~~i~~~~---~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
|.|.-.+-++.+. +.+-.++.+|=|-|||.+..+.+...+... +.+++|.+|...-+.+..+.+.+...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~-------Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL-------EIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc-------CCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3454445555444 345678889999999976554444333211 56799999999999888877766554
No 274
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.83 E-value=0.029 Score=45.95 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=33.3
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..+..+++.+++|+|||..+...+...+.+ +.++++++.. +-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--------g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN--------GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC--------CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 456789999999999997544333333222 5567888743 3335555555554
No 275
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.82 E-value=0.011 Score=57.12 Aligned_cols=80 Identities=19% Similarity=0.080 Sum_probs=63.3
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchh------HHHHH
Q 019041 150 GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPRE------VETLA 223 (347)
Q Consensus 150 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~------~~~~~ 223 (347)
...|+++||+.+...+..+.+++..++.|||||||++........+.++.+...+...+.++|++|... +...+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vm 86 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKM 86 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHH
Confidence 468999999999998998999999999999999999877665666666666666677899999998753 44455
Q ss_pred HHhcCC
Q 019041 224 RQFLRN 229 (347)
Q Consensus 224 ~~~~~~ 229 (347)
+.+...
T Consensus 87 k~L~i~ 92 (814)
T TIGR00596 87 RNLFLR 92 (814)
T ss_pred HHhCcC
Confidence 554443
No 276
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.011 Score=55.00 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=23.1
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
..+.++||||+|.+....+. .+.+.++.-+....+|+.|..
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeCC
Confidence 46889999999988543332 333333333334444444443
No 277
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.018 Score=50.28 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=47.1
Q ss_pred CChHHHHHhhhccceeeccCCC-CCCccccccC-------CCCHHHHHHHHHC-CCCCCcHHHHh-------------hH
Q 019041 1 MTETEVKMYRARREITVEGHDV-PRPIRIFQEA-------NFPDYCLEVIAKL-GFVEPTPIQAQ-------------GW 58 (347)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~l~~~~~~~l~~~-~~~~~~~~Q~~-------------~i 58 (347)
+|..++|.+--+.+-.+.+.-. |.+...|-.+ |.+|+..+.-..+ ....++|..+. ++
T Consensus 81 vs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rvI 160 (416)
T PRK09376 81 VSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETGNPEDLSTRII 160 (416)
T ss_pred eCHHHHHhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcCCCCcccCCCCChhhcccccCCCCcccceeee
Confidence 5778888887666655555332 2222222111 3445444433222 12233333333 33
Q ss_pred hhhh---cCCcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 59 PMAL---KGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 59 ~~~~---~~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
+.+. +|+..++.||.|+|||.. +..+...+..
T Consensus 161 D~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 161 DLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred eeecccccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 3322 478999999999999963 4334444433
No 278
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.81 E-value=0.0082 Score=46.93 Aligned_cols=144 Identities=17% Similarity=0.063 Sum_probs=73.3
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHH-HHHHHHHhccCCCceEEEEECCCCC
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ-IQEEALKFGSRAGIRSTCIYGGAPK 140 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q-~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
+...++.+..++|.|||.+++-.++..+.. +.+++++==-+--..+ =...+.+. .++.......+. .
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--------G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~-~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGH--------GKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGF-T 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCC-c
Confidence 355789999999999998887777777665 5567766321111000 01122221 123222221110 0
Q ss_pred chhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC--hHHHHHHHhhcCCCccEEEEEeecchh
Q 019041 141 GPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPRE 218 (347)
Q Consensus 141 ~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lsaT~~~~ 218 (347)
... ...+--.......+...... ..-..++++|+||+-...+.++ ...+..+++..+...-+|+..-.+++.
T Consensus 88 ~~~-----~~~~e~~~~~~~~~~~a~~~-l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 88 WET-----QDRERDIAAAREGWEEAKRM-LADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred ccC-----CCcHHHHHHHHHHHHHHHHH-HhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 000 00000001122222222221 1135689999999998888774 556777777655555555555555555
Q ss_pred HHHHH
Q 019041 219 VETLA 223 (347)
Q Consensus 219 ~~~~~ 223 (347)
+...+
T Consensus 162 Lie~A 166 (191)
T PRK05986 162 LIEAA 166 (191)
T ss_pred HHHhC
Confidence 44433
No 279
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.81 E-value=0.02 Score=60.86 Aligned_cols=62 Identities=26% Similarity=0.190 Sum_probs=43.8
Q ss_pred CCCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhH---HHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHH
Q 019041 48 VEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYL---LPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~---~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 116 (347)
..+++.|+.++..++.+ +-++++++.|+|||.+.. -++...+.. .+.+++.++|+-.-+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 37899999999998765 457889999999996441 223233222 156788899996665544
No 280
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.80 E-value=0.0002 Score=66.44 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=54.7
Q ss_pred cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcC---CCCEEEEecccccC
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG---RSPIMTATDVAARG 340 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~T~~~~~G 340 (347)
..++|+++|..-.....-+..++.-.+ ....+.|.....+|+.++.+|+.- ...+|.+|.+.+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 356799999998888888888888778 888999999999999999999843 45589999887665
No 281
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.018 Score=54.82 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC-cH--HHHHHHHHHHHHhccCCCceEEEEECCCCC
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-TR--ELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p-~~--~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
++-+.+.||+|+|||.++...+....... ++.++.+++. +. .-.+|+ +.+....++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~RigA~eQL----~~~a~~~gvpv--------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRIGALEQL----RIYGRILGVPV--------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccchHHHHHH----HHHHHhCCCCc---------
Confidence 34578999999999987665443332221 1235555543 21 123333 33322233322
Q ss_pred chhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcCCCccEEEEEeecchh-
Q 019041 141 GPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPRE- 218 (347)
Q Consensus 141 ~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lsaT~~~~- 218 (347)
.++.+++.+.+.+.. +.+.++|+||=+=+..... ....+..+.....+...++.++||....
T Consensus 246 ------------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~ 309 (767)
T PRK14723 246 ------------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDT 309 (767)
T ss_pred ------------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHH
Confidence 122356666655552 3457899999888653321 2233333333334555678888986533
Q ss_pred HHHHHHHh
Q 019041 219 VETLARQF 226 (347)
Q Consensus 219 ~~~~~~~~ 226 (347)
+...++.|
T Consensus 310 l~~i~~~f 317 (767)
T PRK14723 310 LNEVVHAY 317 (767)
T ss_pred HHHHHHHH
Confidence 34455555
No 282
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.79 E-value=0.0061 Score=52.20 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=42.0
Q ss_pred HHHHHCCCCCCcHHHHhhHhh-hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 40 EVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 40 ~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
..+...|. +.+.|...+.. +..+++++++|+||||||. ++-+++..+...+. ..+++.+=...+|
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~~-----~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASAP-----EDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCCC-----CceEEEecCCccc
Confidence 34555564 45667766654 4456899999999999995 55555555533221 4467777666665
No 283
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.78 E-value=0.017 Score=47.57 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=36.3
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|..+++.||+|+|||..++-.+...+.+ +.++++++- .+-..++.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 45789999999999997555444444433 557888873 456667677666653
No 284
>PLN03025 replication factor C subunit; Provisional
Probab=96.78 E-value=0.013 Score=50.63 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=22.9
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEE
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ls 212 (347)
...++|+||+|.+... ....+...++.......+++.+
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEEEe
Confidence 5789999999987543 2344455555544444444443
No 285
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.78 E-value=0.015 Score=53.94 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=55.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (347)
.+++.|++|+|||.... ++...+.... .+.+++++. ...+..++...+.. +
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~~-----~g~~V~Yit-aeef~~el~~al~~-----~----------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRLY-----PGTRVRYVS-SEEFTNEFINSIRD-----G----------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHhC-----CCCeEEEee-HHHHHHHHHHHHHh-----c-----------------
Confidence 48899999999997433 3333333211 144566654 44454443333321 0
Q ss_pred hhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcCC-CccEEEEEeecch
Q 019041 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRP-DRQTLYWSATWPR 217 (347)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~lsaT~~~ 217 (347)
..+.+.+. +.++++|+|||+|.+.... ....+..+++.+.. ..++++.|-..+.
T Consensus 367 -----------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~ 422 (617)
T PRK14086 367 -----------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPK 422 (617)
T ss_pred -----------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChH
Confidence 11222222 2347899999999875543 23344445444433 4556655544433
No 286
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.77 E-value=0.015 Score=50.85 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=23.8
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEe
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsa 213 (347)
....+||+||+|.+... ....+..++....+..++++.+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999976432 23345555555544555555443
No 287
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.76 E-value=0.0062 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=17.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVH 88 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~ 88 (347)
+.+++.||||+|||.+....+...
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999997665444333
No 288
>PF13173 AAA_14: AAA domain
Probab=96.76 E-value=0.015 Score=42.76 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=24.3
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
.-.++++||+|.+.+ +...+..+.... +..++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999998753 666677776654 33444444433
No 289
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.0078 Score=56.07 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
+.++++||.|+|||.++.+
T Consensus 38 HAyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARI 56 (702)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3569999999999975543
No 290
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.74 E-value=0.0064 Score=48.65 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
.++++.||+|.|||..+-
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 379999999999996433
No 291
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.038 Score=51.53 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
+..+++||.|+|||.++-.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999975443
No 292
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.72 E-value=0.0073 Score=51.48 Aligned_cols=67 Identities=24% Similarity=0.313 Sum_probs=41.9
Q ss_pred HHHHHHHCCCCCCcHHHHhhHhh-hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 38 CLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 38 ~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
-...+...|. +.+.|...+.. +..+++++++||||||||. ++.+++..+...+ ...+++++=...++
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~~-----~~~ri~tiEd~~El 174 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKND-----PTDRVVIIEDTREL 174 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhccC-----CCceEEEECCchhh
Confidence 3444555553 34445555544 4556899999999999995 5555655554421 14567887776666
No 293
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.03 Score=48.82 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=60.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC-c-HH-HHHHHHHHHHHhccCCCceEEEEECCCCC
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-T-RE-LAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p-~-~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
++.+++.+|+|+|||.+....+.....+ +.++.+++- + +. -++||..... ..++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~--------g~~V~lItaDtyR~gAveQLk~yae----~lgvpv~-------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQ--------NRTVGFITTDTFRSGAVEQFQGYAD----KLDVELI-------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCccCccHHHHHHHHhh----cCCCCEE--------
Confidence 4567899999999998666554433222 345555542 2 22 2344443332 2333221
Q ss_pred chhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhcc-CChHHHHHHHhhcCCCccEEEEEeecc
Q 019041 141 GPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWP 216 (347)
Q Consensus 141 ~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lsaT~~ 216 (347)
+..+|+.+...+.... ...++++|++|=+=+.... .....+..+.....+..-++.+||+..
T Consensus 266 -------------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 266 -------------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred -------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 1234555544443211 1245789999988654321 123334444444433333456666543
No 294
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.72 E-value=0.012 Score=55.18 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=14.1
Q ss_pred EEEEcCCCCchhHHhHH
Q 019041 67 LIGIAETGSGKTLSYLL 83 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~~~ 83 (347)
.++.||.|+|||.++-+
T Consensus 41 yLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 41 YLFSGTRGVGKTTIARL 57 (647)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999975443
No 295
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.71 E-value=0.043 Score=41.76 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=70.5
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE---EcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCc-
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV---LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKG- 141 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li---l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~- 141 (347)
-+.|-.++|.|||.+++..++..+.. +.++++ +-....-.+ ...++++ .++.......+..-.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~--------g~~v~~vQFlKg~~~~gE--~~~l~~l---~~v~~~~~g~~~~~~~ 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH--------GYRVGVVQFLKGGWKYGE--LKALERL---PNIEIHRMGRGFFWTT 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEEeCCCCccCH--HHHHHhC---CCcEEEECCCCCccCC
Confidence 35677788999998887777777665 667777 322111111 1233333 133332222111000
Q ss_pred h-hhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC--hHHHHHHHhhcCCCccEEEEEeecchh
Q 019041 142 P-QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPRE 218 (347)
Q Consensus 142 ~-~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lsaT~~~~ 218 (347)
. ..... ......+..... ......++++|+||+-.....++ ...+..+++..+....+|+.+-.+++.
T Consensus 71 ~~~~~~~--------~~a~~~~~~a~~-~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~ 141 (159)
T cd00561 71 ENDEEDI--------AAAAEGWAFAKE-AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKE 141 (159)
T ss_pred CChHHHH--------HHHHHHHHHHHH-HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 0 00000 001122222211 11235689999999998877663 566777777766666677766666665
Q ss_pred HHHH
Q 019041 219 VETL 222 (347)
Q Consensus 219 ~~~~ 222 (347)
+...
T Consensus 142 l~e~ 145 (159)
T cd00561 142 LIEA 145 (159)
T ss_pred HHHh
Confidence 5443
No 296
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.69 E-value=0.042 Score=46.21 Aligned_cols=130 Identities=24% Similarity=0.302 Sum_probs=64.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc-C-cHHHHHHHHHHHHHhccCCCceEEEEECCCCCch
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA-P-TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~-p-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
+-+.+.+|+|+|||.+....+... ... +.+++++. . .+.-+. +.+..|....++.+.....+ .+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~~-------g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~--~d- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KKQ-------GKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEG--AD- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hhc-------CCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCC--CC-
Confidence 467788999999998766555433 221 45666665 2 233222 22333323334433221111 10
Q ss_pred hhHhhcCCCcEEEeChHH-HHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcC------CCccEEEEEee
Q 019041 143 QIRDLRRGVEIVIATPGR-LIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIR------PDRQTLYWSAT 214 (347)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~-l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~------~~~~~i~lsaT 214 (347)
|.. ..+.+... ...+++++++|=+-+..... ....+..+.+... +...++.++|+
T Consensus 139 ---------------p~~~~~~~l~~~--~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 139 ---------------PAAVAFDAIQKA--KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred ---------------HHHHHHHHHHHH--HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 111 11111110 12458899999987654321 2334444444443 45567888888
Q ss_pred cchhHHHHHHH
Q 019041 215 WPREVETLARQ 225 (347)
Q Consensus 215 ~~~~~~~~~~~ 225 (347)
...........
T Consensus 202 ~~~~~~~~~~~ 212 (272)
T TIGR00064 202 TGQNALEQAKV 212 (272)
T ss_pred CCHHHHHHHHH
Confidence 65543333333
No 297
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.69 E-value=0.014 Score=44.93 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=27.8
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecch
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~ 217 (347)
..+.++|+||+|.+... ..+.+.+.++.-+....++++|..+..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 46889999999986433 345555666665556666666655543
No 298
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.68 E-value=0.014 Score=55.75 Aligned_cols=18 Identities=33% Similarity=0.235 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
.++++.||+|+|||.++-
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997543
No 299
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.67 E-value=0.022 Score=51.46 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHH
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 114 (347)
..+++.||+|+|||..+ .++...+... +.+++++.. ..+..
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~~-------~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRES-------GGKILYVRS-ELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCEEEeeH-HHHHH
Confidence 35899999999999743 3444444331 456777643 34433
No 300
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.65 E-value=0.021 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
.++++.||+|+|||.+ +-.++..+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999974 43344443
No 301
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.65 E-value=0.0087 Score=53.25 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=25.2
Q ss_pred CcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
+......++..+..++++++.+|+|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344455566667778999999999999997554
No 302
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.64 E-value=0.0025 Score=58.40 Aligned_cols=44 Identities=27% Similarity=0.259 Sum_probs=37.0
Q ss_pred CCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcC
Q 019041 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQ 92 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~ 92 (347)
.|+++|.+.+..+. +|+-.++..|||+|||+..+.+++.++..+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 68889998877643 588899999999999999998888887543
No 303
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.028 Score=51.17 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchhHHhHH
Q 019041 66 DLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~ 83 (347)
.+++.||+|+|||.++-+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999975443
No 304
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.61 E-value=0.005 Score=59.84 Aligned_cols=70 Identities=23% Similarity=0.415 Sum_probs=63.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCC--CCEEEEecccccCCCCCc
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR--SPIMTATDVAARGLGRIT 345 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gidip~ 345 (347)
.++++|||+.-.+....+...|+-+|+-...+.|.+..++|+.++++|+.+. ...|++|...+.|||+-+
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtg 1346 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTG 1346 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccccc
Confidence 5789999999999999999999999999999999999999999999999875 358899999999999743
No 305
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.60 E-value=0.0076 Score=52.77 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=20.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
.+..+++++|||||||. .+..++..+..
T Consensus 148 ~~GlilI~G~TGSGKTT-~l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKST-LAASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 34578999999999996 45556665543
No 306
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.60 E-value=0.094 Score=45.05 Aligned_cols=68 Identities=24% Similarity=0.224 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHh-hHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQAQ-GWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~~-~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
..+.....+...|. +.+.|.. ++..+..+++++++++||||||. ++.+++..+-. ..+++.+=.+.++
T Consensus 114 ~~~~t~~~l~~~gt--~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip~--------~~rivtIEdt~E~ 182 (312)
T COG0630 114 DEPITPEDLIEYGT--ISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIPP--------EERIVTIEDTPEL 182 (312)
T ss_pred CCCCCHHHHhhcCC--CCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCCc--------hhcEEEEeccccc
Confidence 33444444444443 3343333 55667778999999999999995 56666655544 3457777665555
No 307
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.60 E-value=0.0093 Score=49.98 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
.++++.||+|+|||.++-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999997543
No 308
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.59 E-value=0.025 Score=50.85 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
.++++.||+|+|||..+-
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997443
No 309
>PRK04195 replication factor C large subunit; Provisional
Probab=96.57 E-value=0.026 Score=51.90 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
.+.+++.||+|+|||.++-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999996433
No 310
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.034 Score=49.03 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
.+++.||+|+|||.++-
T Consensus 40 ~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 40 AWLLSGTRGVGKTTIAR 56 (363)
T ss_pred EEEEecCCCCCHHHHHH
Confidence 36899999999997544
No 311
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.015 Score=56.32 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=23.6
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEE
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ls 212 (347)
..+.++||||+|.+... ..+.+.++++.......+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 56889999999988543 2334444455444444445444
No 312
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.54 E-value=0.013 Score=49.12 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=56.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhh-cCCCccCCC---CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCC
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVS-AQPRLVQGE---GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~-~~~~~~~~~---~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
.+.++.|+||-|||... .++. ..+.....+ -+.+++-+|...-...++..+-.. .+..+.. ....
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~---lgaP~~~---~~~~ 130 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA---LGAPYRP---RDRV 130 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH---hCcccCC---CCCH
Confidence 48999999999999732 2221 222222111 245566667766666655554432 1211100 0000
Q ss_pred chhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC--hHHHHHHHhhcCCCcc
Q 019041 141 GPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQ 207 (347)
Q Consensus 141 ~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~ 207 (347)
... -....+.+.. -+..++|+||+|+++.... .......++.+.+..+
T Consensus 131 ~~~--------------~~~~~~llr~-----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 131 AKL--------------EQQVLRLLRR-----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred HHH--------------HHHHHHHHHH-----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 000 1112233332 3477999999999876553 2344444555555443
No 313
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.54 E-value=0.042 Score=42.34 Aligned_cols=50 Identities=14% Similarity=0.288 Sum_probs=35.1
Q ss_pred CcccEEEEecchhhhccCC--hHHHHHHHhhcCCCccEEEEEeecchhHHHH
Q 019041 173 RRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREVETL 222 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~ 222 (347)
..+|++|+||+-...+.++ ...+..+++..++...+++..-.+++.+...
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~ 147 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLEL 147 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 5689999999998887773 4566677776655556666666666654444
No 314
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.51 E-value=0.01 Score=50.99 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhHhh-hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 36 DYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
..-...+...|. +.+.|.+.+.. +..++++++.|+||||||. ++..++..+...+ ...+++++-.+.++
T Consensus 121 ~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 121 IFTLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 334455556664 45667777664 4567899999999999995 5555554432211 14467777776665
No 315
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.031 Score=50.15 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=36.4
Q ss_pred cCCCCCCccccccCC---CCHHHHHHHHHCCCCCCcHHHHhhHhhh--hcCCcEEEEcCCCCchhHH
Q 019041 19 GHDVPRPIRIFQEAN---FPDYCLEVIAKLGFVEPTPIQAQGWPMA--LKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 19 ~~~~~~~~~~~~~~~---l~~~~~~~l~~~~~~~~~~~Q~~~i~~~--~~~~~~lv~~~tGsGKT~~ 80 (347)
.+....|-.+|+++| |+.+..+.++...-....| -+.++.+ ..=+.+++-+|+|+|||+.
T Consensus 208 ~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFp--p~vie~lGi~HVKGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 208 SNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFP--PEVIEQLGIKHVKGILLYGPPGTGKTLI 272 (744)
T ss_pred hccccCCCCChhhcccccchHHHHHHHHHHHHhhcCC--HHHHHHcCccceeeEEEECCCCCChhHH
Confidence 344568888899984 6777777666422111111 1222221 1126799999999999973
No 316
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.036 Score=48.11 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=24.4
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEe
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsa 213 (347)
..+.++|+|||+.+.. +..+.+...+..-+....+++.+.
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEcC
Confidence 5688999999998744 233444444444444454555544
No 317
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.49 E-value=0.042 Score=45.03 Aligned_cols=52 Identities=27% Similarity=0.330 Sum_probs=31.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.|..+++.+++|+|||..+...+...+.+ +..+++++. .+..+++.+.+..+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 46789999999999997544333333332 446777764 33345555444444
No 318
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.47 E-value=0.039 Score=47.20 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFV 87 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~ 87 (347)
++++++.||+|+|||..+...+-.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~ 179 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANE 179 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999855443333
No 319
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.47 E-value=0.027 Score=50.94 Aligned_cols=91 Identities=22% Similarity=0.285 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (347)
|.-+++.+++|+|||...+..+. .+.. .+.+++|++-. +-..|+...+.+++...+ ++ .+...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~-~~a~-------~g~~vlYvs~E-es~~qi~~ra~rlg~~~~-~l-~~~~e------ 142 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAA-RLAA-------AGGKVLYVSGE-ESASQIKLRAERLGLPSD-NL-YLLAE------ 142 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHHh-------cCCeEEEEEcc-ccHHHHHHHHHHcCCChh-cE-EEeCC------
Confidence 45788999999999974443333 3322 15578888753 445666666655532111 00 01000
Q ss_pred hHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc
Q 019041 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (347)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (347)
...+.+...+.. .+.+++|+|+++.+..
T Consensus 143 ------------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 ------------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ------------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 123344444332 3578999999997654
No 320
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.038 Score=53.41 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
-++++||.|+|||.++-
T Consensus 40 AyLFtGPpGtGKTTLAR 56 (944)
T PRK14949 40 AYLFTGTRGVGKTSLAR 56 (944)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35899999999997544
No 321
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.051 Score=50.97 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=22.2
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEE
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ls 212 (347)
..+.++|+||+|.+.... .+.+...++.-++...+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 568899999999874332 233444444433334444444
No 322
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.44 E-value=0.0091 Score=48.87 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=65.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC-----ceEEEEECC
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG-----IRSTCIYGG 137 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~-----~~~~~~~~~ 137 (347)
.|..+++.+|+|+|||..++-.+.+.+.+. +.++++++- .+-.+++.+.+..++.... -....+...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 356899999999999975554454554441 335777774 3444666666666532211 012222111
Q ss_pred CCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC----ChHHHHHHHhhcCCCccEEEEEe
Q 019041 138 APKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG----FEPQIRKIVTQIRPDRQTLYWSA 213 (347)
Q Consensus 138 ~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~----~~~~~~~~~~~~~~~~~~i~lsa 213 (347)
...... . -...+.+...+...... .+.+.+|+|-...+.... +...+..+...++......++++
T Consensus 90 ~~~~~~--------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 90 PERIGW--------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGGST---------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cccccc--------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 111000 0 11233333332211111 123799999999872222 33445555555544445556666
Q ss_pred e
Q 019041 214 T 214 (347)
Q Consensus 214 T 214 (347)
.
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 5
No 323
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.42 E-value=0.007 Score=48.27 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=26.5
Q ss_pred CCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
......+|+|||+.+.. +....+++.++...+.++..+...+
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcc
Confidence 35678999999997644 2345566666666555555444444
No 324
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.42 E-value=0.0052 Score=53.21 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.5
Q ss_pred hhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
.+..+++++++||||||||. ++.+++..+.. ..+++.+=+..++
T Consensus 158 ~v~~~~nilI~G~tGSGKTT-ll~aLl~~i~~--------~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTT-MSKTLISAIPP--------QERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHH-HHHHHHcccCC--------CCCEEEECCCccc
Confidence 34567899999999999995 45555554432 3457777666665
No 325
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.41 E-value=0.04 Score=48.44 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=50.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (347)
|.-+++.+++|+|||...+..+ ..+... +.+++|+... +-..|+.....+++...+ ++ .+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a-~~~a~~-------g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~-~l-~l~~------- 143 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVA-ARLAKR-------GGKVLYVSGE-ESPEQIKLRADRLGISTE-NL-YLLA------- 143 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHH-HHHHhc-------CCeEEEEECC-cCHHHHHHHHHHcCCCcc-cE-EEEc-------
Confidence 4678999999999997544333 333221 4578888654 334566555555422110 00 0000
Q ss_pred hHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
-+..+.+...+.. .+.+++|+|+++.+.
T Consensus 144 -----------e~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 144 -----------ETNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred -----------cCcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 0123444444432 257899999999774
No 326
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.39 E-value=0.043 Score=51.02 Aligned_cols=133 Identities=17% Similarity=0.151 Sum_probs=77.0
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC--CceEEEEECCCCC
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA--GIRSTCIYGGAPK 140 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~ 140 (347)
+.+..++..|==.|||.... +++..+...- .+.++++.+|....++...+++....... +..+....| .
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~-----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e-- 323 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATF-----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E-- 323 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhC-----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c--
Confidence 45667888899999998555 4444333211 16789999999999999998887754421 111212222 1
Q ss_pred chhhHhhcCC--CcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 141 GPQIRDLRRG--VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 141 ~~~~~~~~~~--~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
.....+.++ ..|.+.+. ...+...-.+++++|+|||+.+....+...+ -.+. ...+++|++|.|
T Consensus 324 -~I~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~--~~n~k~I~ISS~ 389 (738)
T PHA03368 324 -TISFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLN--QTNCKIIFVSST 389 (738)
T ss_pred -EEEEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHh--ccCccEEEEecC
Confidence 111122222 24555532 1122233457999999999976443333333 2222 237788999877
No 327
>PHA00012 I assembly protein
Probab=96.38 E-value=0.13 Score=43.60 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=34.4
Q ss_pred CCcccEEEEecchhhhccC-C----hHHHHHHHhhcC-CCccEEEEEeecchhHHHHHHHhcC
Q 019041 172 LRRVTYLVLDEADRMLDMG-F----EPQIRKIVTQIR-PDRQTLYWSATWPREVETLARQFLR 228 (347)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~-~----~~~~~~~~~~~~-~~~~~i~lsaT~~~~~~~~~~~~~~ 228 (347)
...-+++|+||||.....- + ...+..++...+ ...-++++|..+. .+...++..+.
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR~ll~ 140 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAREALA 140 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHHHhhh
Confidence 3567899999999876422 2 233555555443 3556788888864 45555544433
No 328
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.37 E-value=0.0056 Score=47.86 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=27.0
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHH
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 115 (347)
.+++++++.||+|+|||..+...+-+.+.. +..++++ +...|...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~--------g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK--------GYSVLFI-TASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEE-EHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC--------CcceeEe-ecCceecc
Confidence 356899999999999998655544444432 4556665 44455443
No 329
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.36 E-value=0.034 Score=45.98 Aligned_cols=41 Identities=29% Similarity=0.125 Sum_probs=27.6
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
+..|.-+++.|++|+|||...+..+...+.+. +.++++++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-------g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ-------GKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCceEEEeC
Confidence 34567889999999999975444444444331 456888873
No 330
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.34 E-value=0.056 Score=46.40 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=31.1
Q ss_pred CCCCcHHHHhhHhhhhc----C---CcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 47 FVEPTPIQAQGWPMALK----G---RDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~----~---~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
+..++|+|..++..+.. + +-.++.||.|.||+..+. .+...+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL-ALAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHhC
Confidence 35788999999887664 3 258999999999996544 34444433
No 331
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0058 Score=45.77 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=60.6
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
..+.+.+++|+|||. ++.-+...+...+- .-.=++|| ++++-+...|+++..+..|....--.
T Consensus 6 mki~ITG~PGvGKtT-l~~ki~e~L~~~g~------kvgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~la~ 68 (179)
T COG1618 6 MKIFITGRPGVGKTT-LVLKIAEKLREKGY------KVGGFITP----------EVREGGKRIGFKIVDLATGEEGILAR 68 (179)
T ss_pred eEEEEeCCCCccHHH-HHHHHHHHHHhcCc------eeeeEEee----------eeecCCeEeeeEEEEccCCceEEEEE
Confidence 468999999999996 45556666655321 11223444 44555566678887776554321110
Q ss_pred Hhhc----CCCcEEEeChHHHH-HHHhcCCCCCCcccEEEEecchhhhc--cCChHHHHHHHhh
Q 019041 145 RDLR----RGVEIVIATPGRLI-DMLEAQHTNLRRVTYLVLDEADRMLD--MGFEPQIRKIVTQ 201 (347)
Q Consensus 145 ~~~~----~~~~iiv~T~~~l~-~~~~~~~~~~~~~~~iIvDE~h~~~~--~~~~~~~~~~~~~ 201 (347)
.... ..+.|-+-..+.+. ..+++ .+..-|++|+||+--+-- ..|...+..+++.
T Consensus 69 ~~~~~~rvGkY~V~v~~le~i~~~al~r---A~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 69 VGFSRPRVGKYGVNVEGLEEIAIPALRR---ALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred cCCCCcccceEEeeHHHHHHHhHHHHHH---HhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 0000 01222222222111 11111 123368999999986543 3366666666543
No 332
>CHL00181 cbbX CbbX; Provisional
Probab=96.33 E-value=0.027 Score=47.79 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 019041 64 GRDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~ 83 (347)
+.++++.||+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999975543
No 333
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.073 Score=47.17 Aligned_cols=126 Identities=16% Similarity=0.128 Sum_probs=62.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc--CcHHHHHHHHHHHHHhccCCCceEEEEECCCCCch
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA--PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
..+++.+|+|+|||.++...+....... +.++.+++ +.+..+.+ .+..+....++.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~-------G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~--------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHM-------GKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP--------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCeEEEecccchhhhHHH---HHHHHHHhcCCCeee---------
Confidence 3478999999999987665554332221 44555554 22333332 233332233332210
Q ss_pred hhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhcc-CChHHHHHHHhhcC---CCccEEEEEeecch-
Q 019041 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIR---PDRQTLYWSATWPR- 217 (347)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~---~~~~~i~lsaT~~~- 217 (347)
+.....+...+. -.++++|+||=+-..... .....+..++.... +...++.++||...
T Consensus 285 ------------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 285 ------------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH 347 (432)
T ss_pred ------------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH
Confidence 111223333332 145789999976543211 12333444444332 22457888999776
Q ss_pred hHHHHHHHh
Q 019041 218 EVETLARQF 226 (347)
Q Consensus 218 ~~~~~~~~~ 226 (347)
......+.+
T Consensus 348 ~~~~~~~~f 356 (432)
T PRK12724 348 HTLTVLKAY 356 (432)
T ss_pred HHHHHHHHh
Confidence 344444433
No 334
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.31 E-value=0.0097 Score=55.34 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=76.2
Q ss_pred CCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH-HHHHhcc
Q 019041 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE-EALKFGS 125 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~-~~~~~~~ 125 (347)
..+|||.+.++.+... +.+.+..++-+|||.+.+..+...+... ...+|++.|+...++.+.+ .+..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 6789999999998775 5789999999999986555554444443 3458999999999999874 5554433
Q ss_pred CCCceEEEEEC---CCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc
Q 019041 126 RAGIRSTCIYG---GAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (347)
Q Consensus 126 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (347)
..+.--..+.. .............+..+.+....+-.. +.-..+.++++||++....
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~------l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSN------LRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCcc------cccCCcCEEEEechhhccc
Confidence 22211111111 111111111112244455554322111 1223578999999998753
No 335
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.069 Score=44.46 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=29.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
.+++.+|+|+||++.+-..+.+ ...+++-+.+..|+..|.-+-
T Consensus 168 giLLyGPPGTGKSYLAKAVATE------------AnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATE------------ANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhh------------cCCceEEeehHHHHHHHhccH
Confidence 5899999999999754433333 225777778877776554333
No 336
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.28 E-value=0.0068 Score=49.87 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=12.1
Q ss_pred EEEEcCCCCchhHH
Q 019041 67 LIGIAETGSGKTLS 80 (347)
Q Consensus 67 ~lv~~~tGsGKT~~ 80 (347)
++|.|++|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999963
No 337
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.029 Score=52.75 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
+.+|++||.|+|||.++.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4579999999999975543
No 338
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.27 E-value=0.082 Score=43.50 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=33.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
|.-+++.+++|+|||..+...+...+.+ +.++++++-... ..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcCCC-HHHHHHHHHHC
Confidence 5678899999999997544444443332 567888876433 35666666665
No 339
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.26 E-value=0.033 Score=50.43 Aligned_cols=148 Identities=15% Similarity=0.156 Sum_probs=83.1
Q ss_pred CCcHHHHhhHhhhhc------C----CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALK------G----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~------~----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 118 (347)
.+-|+|..++..+.. + +.+++..|-+-|||..+...+...+.-.. ..+..+.+++|+.+-+.+...
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~----~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW----RSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh----hcCCcEEEEeccHHHHHHhhH
Confidence 688999999988762 1 35789999999999755533333322221 137789999999999988888
Q ss_pred HHHHhccCCC-ceEEEEECCCCCchhhHhhcC-CCcEEEeChHHHHHHH--hcCCCCCCcccEEEEecchhhhccCChHH
Q 019041 119 EALKFGSRAG-IRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDML--EAQHTNLRRVTYLVLDEADRMLDMGFEPQ 194 (347)
Q Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~--~~~~~~~~~~~~iIvDE~h~~~~~~~~~~ 194 (347)
.++......+ ++... .+.. +..|...-.......+ .....+-.+..+.|+||.|.....+ ..
T Consensus 137 ~ar~mv~~~~~l~~~~------------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~ 202 (546)
T COG4626 137 PARDMVKRDDDLRDLC------------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DM 202 (546)
T ss_pred HHHHHHHhCcchhhhh------------ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HH
Confidence 7776544332 10000 0000 0111111111111211 2223344567899999999864432 23
Q ss_pred HHHHHhhc--CCCccEEEEEee
Q 019041 195 IRKIVTQI--RPDRQTLYWSAT 214 (347)
Q Consensus 195 ~~~~~~~~--~~~~~~i~lsaT 214 (347)
+..+..-+ ++..++++.|..
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHHhhhccCcCceEEEEecC
Confidence 33332222 345667776654
No 340
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.26 E-value=0.041 Score=51.13 Aligned_cols=19 Identities=26% Similarity=0.156 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
+..+++||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999975443
No 341
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.064 Score=49.67 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=22.1
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEE
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ls 212 (347)
..+.++|+||+|.+....+ +.+...++.-+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 4678999999998754322 23333344433344445444
No 342
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.093 Score=49.26 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhHHhHH
Q 019041 66 DLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~ 83 (347)
-++++||.|+|||.++.+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 469999999999975544
No 343
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.21 E-value=0.078 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=17.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFV 87 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~ 87 (347)
.+++++++|+|||.++.-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999876655444
No 344
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=96.21 E-value=0.077 Score=41.03 Aligned_cols=141 Identities=19% Similarity=0.146 Sum_probs=69.5
Q ss_pred EEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHH-HHHHHhccCCCceEEEEECCCCCchhhH
Q 019041 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ-EEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (347)
++|.-..|-|||.+++-.++..+.. +.++.|+-=-+-=...=. ..+.++ ...+....+..+..-....+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh--------G~rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~~~~~ 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH--------GLRVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWETQDR 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC--------CCEEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCCCcCc
Confidence 6777788899998777667666555 667776632111101101 122222 11222222222211111100
Q ss_pred hhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC--hHHHHHHHhhcCCCccEEEEEeecchhHHHHH
Q 019041 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREVETLA 223 (347)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~ 223 (347)
. .++ ......+........ -..++++|+||.-..+..++ ...+..++...+....+|+..-..++.+.+.+
T Consensus 101 ~----~d~--~aa~~~w~~a~~~l~-~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~A 173 (198)
T COG2109 101 E----ADI--AAAKAGWEHAKEALA-DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELA 173 (198)
T ss_pred H----HHH--HHHHHHHHHHHHHHh-CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHH
Confidence 0 122 223333332222111 13699999999998887764 45666666655555555555544555544443
Q ss_pred H
Q 019041 224 R 224 (347)
Q Consensus 224 ~ 224 (347)
.
T Consensus 174 D 174 (198)
T COG2109 174 D 174 (198)
T ss_pred H
Confidence 3
No 345
>PRK10867 signal recognition particle protein; Provisional
Probab=96.21 E-value=0.08 Score=47.47 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=17.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFV 87 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~ 87 (347)
-+++++++|+|||.+..-.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999876654443
No 346
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.066 Score=49.47 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=22.3
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEE
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ls 212 (347)
....++|+||+|.+.... .+.+...++.-+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999874432 233444444433344444444
No 347
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.13 Score=45.94 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
+..+++||+|+|||.++..
T Consensus 39 ha~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3488999999999975543
No 348
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.042 Score=47.39 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=25.3
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHH
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 115 (347)
+.+++.+|+|+|||+.+=..+-+ ...+++-+.+..|..-
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE------------c~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE------------CGTTFFNVSSSTLTSK 284 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh------------hcCeEEEechhhhhhh
Confidence 67999999999999743322221 2346666666666543
No 349
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.19 E-value=0.038 Score=51.78 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
+.++++||.|+|||.++.+
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARI 65 (598)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999975544
No 350
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.063 Score=49.34 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=16.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhh
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
.+++.||+|+|||.++. .+...+
T Consensus 38 a~Lf~GppGtGKTTlA~-~lA~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR-LIAMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHH
Confidence 45999999999997544 333343
No 351
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.19 E-value=0.038 Score=49.15 Aligned_cols=135 Identities=19% Similarity=0.045 Sum_probs=75.7
Q ss_pred CCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
.+..+-..|.++.-..-.|.. -+.+-.|||||.+.+.-+...-.+++ ..++++-+-++.|+.++...+.+|.-
T Consensus 159 kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knP------d~~I~~Tfftk~L~s~~r~lv~~F~f 231 (660)
T COG3972 159 KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNP------DSRIAFTFFTKILASTMRTLVPEFFF 231 (660)
T ss_pred HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCC------CceEEEEeehHHHHHHHHHHHHHHHH
Confidence 444566677777655555554 67888999999865544443333333 66899999999999998888776531
Q ss_pred C--------CCceEEEEECCCCCchhhHhh---cCCCcEEEeC----hHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 126 R--------AGIRSTCIYGGAPKGPQIRDL---RRGVEIVIAT----PGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 126 ~--------~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~T----~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
- ...-++.-.||.+.......+ .....+-++- ...+.+-+....-+..-+++|.+||.+.+.
T Consensus 232 ~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDFP 308 (660)
T COG3972 232 MRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDFP 308 (660)
T ss_pred HHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccCC
Confidence 1 122334444554443322111 1111222221 111222222112234568999999999753
No 352
>PHA00729 NTP-binding motif containing protein
Probab=96.18 E-value=0.063 Score=43.36 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
.++++.|++|+|||..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 379999999999997544
No 353
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.16 E-value=0.027 Score=49.78 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=17.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
.++++.||+|+|||.+ +-.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999964 33444444
No 354
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.15 E-value=0.017 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=20.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
.+..++++||||||||.+ +..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 567899999999999964 455555543
No 355
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.13 E-value=0.062 Score=45.23 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
..+++.||+|+|||..+-
T Consensus 44 ~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIR 61 (269)
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 358899999999997433
No 356
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.12 E-value=0.0088 Score=51.73 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=29.2
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
+..+++++++|+||||||. ++-+++..+.. ..+++.+=.+.++
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~ip~--------~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREIPA--------IERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhCCC--------CCeEEEecCCCcc
Confidence 3457899999999999995 55555555433 3466666444444
No 357
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.09 E-value=0.046 Score=46.34 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
+.++++.||+|+|||.++-
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999997553
No 358
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.05 Score=50.78 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
..+|+.+|.|+|||.++.+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999976554
No 359
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.07 E-value=0.031 Score=53.65 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=61.4
Q ss_pred HHHhhcCCCeEEEEecCcccHHHHHHHHhh----CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec-ccccCCCCC
Q 019041 270 LLKEVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VAARGLGRI 344 (347)
Q Consensus 270 ~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip 344 (347)
++.....+.+++|.+++.+-|.+.++.+++ .|..+..++|+++..+|..+++.+.+|+.+|+|+|. .+...+.++
T Consensus 303 il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~ 382 (681)
T PRK10917 303 ALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFH 382 (681)
T ss_pred HHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhc
Confidence 333344577999999999999988887764 468899999999999999999999999999999995 444444444
Q ss_pred cC
Q 019041 345 TV 346 (347)
Q Consensus 345 ~v 346 (347)
++
T Consensus 383 ~l 384 (681)
T PRK10917 383 NL 384 (681)
T ss_pred cc
Confidence 43
No 360
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.089 Score=46.27 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=24.2
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeec
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~ 215 (347)
....++||||+|.+... ..+.+.+.++.-+....+|++|..+
T Consensus 140 ~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 56789999999987332 2334444444433344455555443
No 361
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.04 E-value=0.067 Score=48.95 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHH
Q 019041 64 GRDLIGIAETGSGKTLS 80 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (347)
.+.+++.||+|+|||..
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999974
No 362
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.02 E-value=0.05 Score=47.94 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=27.5
Q ss_pred cccEEEEecchhhhccC-ChHHHHHHHhhcCC-CccEEEEEeecchh
Q 019041 174 RVTYLVLDEADRMLDMG-FEPQIRKIVTQIRP-DRQTLYWSATWPRE 218 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~lsaT~~~~ 218 (347)
+++++++|+++.+..+. ....+..++..+.. +.|+++.|..++..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 48899999999876553 34444445555543 33666666554444
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.01 E-value=0.27 Score=42.35 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=30.0
Q ss_pred CcccEEEEecchhhhccC-ChHHHHHHHhhc------CCCccEEEEEeecchhHHHHHHHh
Q 019041 173 RRVTYLVLDEADRMLDMG-FEPQIRKIVTQI------RPDRQTLYWSATWPREVETLARQF 226 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~------~~~~~~i~lsaT~~~~~~~~~~~~ 226 (347)
.++++||+|=+-++.... ....+..+.+.. .+...++.++||........+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 568999999998654322 223444443322 233457888998655433333333
No 364
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.12 Score=46.15 Aligned_cols=22 Identities=36% Similarity=0.259 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPA 85 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~ 85 (347)
++.+.+.||+|+|||.+....+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA 212 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLA 212 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999997655433
No 365
>PRK08506 replicative DNA helicase; Provisional
Probab=96.00 E-value=0.076 Score=48.53 Aligned_cols=143 Identities=19% Similarity=0.090 Sum_probs=69.1
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
+..|.-+++.|.||.|||..++-.+.. +... +..+++++. ..-..|+...+.... .++....+..+.-.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~-~~~~-------g~~V~~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~~~l~ 257 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALK-ALNQ-------DKGVAFFSL-EMPAEQLMLRMLSAK--TSIPLQNLRTGDLD 257 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHH-HHhc-------CCcEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHhcCCCC
Confidence 344567889999999999644443433 3221 445777653 344555555443321 12222222222222
Q ss_pred chhhHhh------cCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhhccC----ChHHHHHHHhhc---
Q 019041 141 GPQIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG----FEPQIRKIVTQI--- 202 (347)
Q Consensus 141 ~~~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~----~~~~~~~~~~~~--- 202 (347)
...+..+ .....+.|- |.+.+...++........+++||||-.+.+.... ....+..+.+.+
T Consensus 258 ~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~l 337 (472)
T PRK08506 258 DDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLL 337 (472)
T ss_pred HHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 2222111 112344442 4445544443222112357899999999775322 112223232222
Q ss_pred C--CCccEEEEEee
Q 019041 203 R--PDRQTLYWSAT 214 (347)
Q Consensus 203 ~--~~~~~i~lsaT 214 (347)
. -++.++++|..
T Consensus 338 Akel~ipVi~lsQL 351 (472)
T PRK08506 338 ARELDIPIIALSQL 351 (472)
T ss_pred HHHhCCcEEEEeec
Confidence 1 25677777765
No 366
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.00 E-value=0.034 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVH 88 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~ 88 (347)
++-+.+.||+|+|||.+....+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4568899999999998766544333
No 367
>PRK06904 replicative DNA helicase; Validated
Probab=95.99 E-value=0.099 Score=47.72 Aligned_cols=145 Identities=18% Similarity=0.111 Sum_probs=71.2
Q ss_pred hhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECC-C
Q 019041 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGG-A 138 (347)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~-~ 138 (347)
-+..|.-+++.|.||.|||.. ++-+...+... .+..+++++. ..-..|+...+.... .++....+..+ .
T Consensus 217 Gl~~G~LiiIaarPg~GKTaf-alnia~~~a~~------~g~~Vl~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~g~~ 286 (472)
T PRK06904 217 GLQPSDLIIVAARPSMGKTTF-AMNLCENAAMA------SEKPVLVFSL-EMPAEQIMMRMLASL--SRVDQTKIRTGQN 286 (472)
T ss_pred ccCCCcEEEEEeCCCCChHHH-HHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhh--CCCCHHHhccCCC
Confidence 344566788999999999964 44333332211 1445777653 355556555544322 22222222233 2
Q ss_pred CCchhhH-------hhcCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC----hHHHHHHHhhc
Q 019041 139 PKGPQIR-------DLRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF----EPQIRKIVTQI 202 (347)
Q Consensus 139 ~~~~~~~-------~~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~----~~~~~~~~~~~ 202 (347)
-...++. .+....++.|- |+..+.............+++||||-.|.+..... ...+..+.+.+
T Consensus 287 l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~L 366 (472)
T PRK06904 287 LDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSL 366 (472)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 2222221 12223445552 45555444332221123578999999997753321 22333333332
Q ss_pred C-----CCccEEEEEee
Q 019041 203 R-----PDRQTLYWSAT 214 (347)
Q Consensus 203 ~-----~~~~~i~lsaT 214 (347)
+ -++.++++|.-
T Consensus 367 K~lAkel~ipVi~lsQL 383 (472)
T PRK06904 367 KALAKELKVPVVALSQL 383 (472)
T ss_pred HHHHHHhCCeEEEEEec
Confidence 1 25667777744
No 368
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.98 E-value=0.24 Score=43.80 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=52.1
Q ss_pred EEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHH---HHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI---QEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 68 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
++.++.|+|||.+.+..++..+...+. ...+++...+..+...+ ...+..+... .+...........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRK---- 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSE----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCc----
Confidence 467899999999888777777766542 24555554444444432 2233333232 2222111000000
Q ss_pred HhhcCCCcEEEeChHHH--HHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHH
Q 019041 145 RDLRRGVEIVIATPGRL--IDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKI 198 (347)
Q Consensus 145 ~~~~~~~~iiv~T~~~l--~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~ 198 (347)
..+.++..|.+.+.+.- ..-+.. ..++++++||+-...+..+...+...
T Consensus 71 ~~~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~~~~~~~~~ 121 (384)
T PF03237_consen 71 IILPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDAFSELIRRL 121 (384)
T ss_dssp EEETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHHHHHHHHHH
T ss_pred EEecCceEEEEeccccccccccccc-----cccceeeeeecccCchHHHHHHHHhh
Confidence 00134556666664321 111221 45789999998876544344444333
No 369
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.11 Score=45.32 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=24.7
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
..+.++||||+|.+... ..+.+...++.-+....++++|..
T Consensus 140 g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEECC
Confidence 46789999999987433 234455555554344445555543
No 370
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.97 E-value=0.0096 Score=46.34 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=24.4
Q ss_pred EEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcH
Q 019041 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 110 (347)
.++.||++||||.- ++..+.+.... +.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~~~-------~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYEIA-------GKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHT-------T-EEEEEEEST
T ss_pred EEEECCcCChhHHH-HHHHHHHHHhC-------CCeEEEEEecc
Confidence 47889999999964 54444444432 66788888853
No 371
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.96 E-value=0.029 Score=47.94 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchhHH
Q 019041 65 RDLIGIAETGSGKTLS 80 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (347)
-++++++|+|+|||..
T Consensus 163 pSmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTL 178 (554)
T ss_pred CceEEecCCCCchHHH
Confidence 3789999999999963
No 372
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.95 E-value=0.026 Score=49.30 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=27.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
.+..++++||||||||.+ +..++..+... .+.+++.+-...+.
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 356899999999999964 44455444321 13466666554443
No 373
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.94 E-value=0.12 Score=49.88 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
..++++.||+|+|||..+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 358999999999999753
No 374
>PRK05973 replicative DNA helicase; Provisional
Probab=95.93 E-value=0.024 Score=46.29 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHH---------HhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCE
Q 019041 32 ANFPDYCLEVIAKLGFVEPTPIQ---------AQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (347)
Q Consensus 32 ~~l~~~~~~~l~~~~~~~~~~~Q---------~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (347)
..+++.+-+.-.+-||....-.. .++..-+..|.-++|.|++|+|||..++-.+...+.+ +.+
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~ 94 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRT 94 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCe
Confidence 34555555555556665432222 2233445567789999999999997555444444433 556
Q ss_pred EEEEcCcHHHHHHHHHHHHHh
Q 019041 103 VLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 103 ~lil~p~~~l~~q~~~~~~~~ 123 (347)
++|++-- +-..|+.+.+..+
T Consensus 95 vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 95 GVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEEEEEe-CCHHHHHHHHHHc
Confidence 7777643 3346666677665
No 375
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.93 E-value=0.0084 Score=46.35 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=18.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
++++.+++|+|||. .+.-+++.+..
T Consensus 1 ~i~iTG~pG~GKTT-ll~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTT-LLKKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHH-HHHHHHHHHHH
T ss_pred CEEEECcCCCCHHH-HHHHHHHHhhc
Confidence 47899999999996 45566666654
No 376
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.91 E-value=0.15 Score=39.27 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=62.1
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH-HHHHHHHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE-LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
-+.+--..|-|||.+++-.++..+.. +.+++++==.+- -..-=...++++ .++.+.....+.......
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~--------G~rV~ivQFlKg~~~~GE~~~l~~l---~~~~~~~~g~~f~~~~~~ 73 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGH--------GMRVLIVQFLKGGRYSGELKALKKL---PNVEIERFGKGFVWRMNE 73 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCT--------T--EEEEESS--SS--HHHHHHGGG---T--EEEE--TT----GGG
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhC--------CCEEEEEEEecCCCCcCHHHHHHhC---CeEEEEEcCCcccccCCC
Confidence 35667788999998877777766655 667888744333 100001122222 123332222211111010
Q ss_pred HhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC--hHHHHHHHhhcCCCccEEEEEeecchhHHHH
Q 019041 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREVETL 222 (347)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~ 222 (347)
.. .+ ....+..+..... ...-..+++||+||+-...+.++ ...+..+++..+....+++..-.+++.+...
T Consensus 74 ~~----~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 74 EE----ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp HH----HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred cH----HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 00 01 1112222332222 11235699999999998888774 4567777776555556666655565554443
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.90 E-value=0.18 Score=39.21 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=14.2
Q ss_pred EEEEcCCCCchhHHhHHH
Q 019041 67 LIGIAETGSGKTLSYLLP 84 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~~~~ 84 (347)
+++.+++|+|||......
T Consensus 3 ~~~~G~~G~GKTt~~~~l 20 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKL 20 (173)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999764433
No 378
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.88 E-value=0.12 Score=51.71 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=31.7
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeec
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~ 215 (347)
.--++|+|++|.+.+......+..++...++...+++.|-+.
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 345899999998866555667888888887777777777663
No 379
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.054 Score=50.55 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchhHHhHH
Q 019041 66 DLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~ 83 (347)
-++++||.|+|||.++.+
T Consensus 37 a~Lf~Gp~G~GKTt~A~~ 54 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARI 54 (584)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999976554
No 380
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.2 Score=45.23 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHhh-------hhcC-----CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCC
Q 019041 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPM-------ALKG-----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE 99 (347)
Q Consensus 32 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-------~~~~-----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~ 99 (347)
+|.+++-.+.....|+....+.-.+.++. .... -.+++.+|+|+|||..++-.+.. . +
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~--S--------~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS--S--------D 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh--c--------C
Confidence 57777777777777765554444444332 1111 26899999999999644433322 1 2
Q ss_pred CCEEEEEcCcHH
Q 019041 100 GPIVLVLAPTRE 111 (347)
Q Consensus 100 ~~~~lil~p~~~ 111 (347)
-+.+=++.|...
T Consensus 564 FPFvKiiSpe~m 575 (744)
T KOG0741|consen 564 FPFVKIISPEDM 575 (744)
T ss_pred CCeEEEeChHHc
Confidence 455667777533
No 381
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.82 E-value=0.069 Score=48.24 Aligned_cols=122 Identities=20% Similarity=0.132 Sum_probs=58.2
Q ss_pred hHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEC
Q 019041 57 GWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYG 136 (347)
Q Consensus 57 ~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 136 (347)
++.-+..|.-+++.|+||+|||..++-.+....... +..+++++ ...-..|+...+... ..++....+..
T Consensus 187 ~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~-------g~~v~~fS-lEm~~~~l~~Rl~~~--~~~v~~~~~~~ 256 (421)
T TIGR03600 187 LTNGLVKGDLIVIGARPSMGKTTLALNIAENVALRE-------GKPVLFFS-LEMSAEQLGERLLAS--KSGINTGNIRT 256 (421)
T ss_pred HhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEE-CCCCHHHHHHHHHHH--HcCCCHHHHhc
Confidence 333344567789999999999964443333332221 44577776 233344444433321 12222222222
Q ss_pred CCCCchhhHhh------cCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhhc
Q 019041 137 GAPKGPQIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (347)
Q Consensus 137 ~~~~~~~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (347)
+.....++..+ ..+.++.|. |.+.+...+.........+++||||-.|.+..
T Consensus 257 ~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 257 GRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 22222222111 112344443 33444443332221222588999999997753
No 382
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.81 E-value=0.13 Score=45.81 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=32.6
Q ss_pred CCccccccCCCCHHHHHHHHH---CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHh
Q 019041 24 RPIRIFQEANFPDYCLEVIAK---LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~---~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (347)
.|...|+..+--+...+.++. ..+..+..++...+ ...+.+++.||+|+|||..+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 445567776555555555554 23333333332222 24578999999999999743
No 383
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.81 E-value=0.22 Score=48.37 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=21.2
Q ss_pred CcHHHHhhHhhhhc------CCcEEEEcCCCCchhHHh
Q 019041 50 PTPIQAQGWPMALK------GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 50 ~~~~Q~~~i~~~~~------~~~~lv~~~tGsGKT~~~ 81 (347)
+--.|...+..+.. ..|+++.||+|+|||..+
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 43445544444332 358999999999999643
No 384
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.27 Score=43.26 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
.|+++-|+||+|||.+.-. ....+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 4799999999999975443 3344333
No 385
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.26 Score=46.49 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
+.+++.||.|+|||.++.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~ 56 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTAR 56 (585)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346999999999997544
No 386
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.091 Score=44.32 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVH 88 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~ 88 (347)
+-++++||+|+|||. ..-+..+.
T Consensus 178 RliLlhGPPGTGKTS-LCKaLaQk 200 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTS-LCKALAQK 200 (423)
T ss_pred eEEEEeCCCCCChhH-HHHHHHHh
Confidence 458899999999995 33333333
No 387
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.78 E-value=0.33 Score=41.39 Aligned_cols=131 Identities=24% Similarity=0.293 Sum_probs=66.3
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (347)
.+++.+..|+|||.+..-.+ .++.++ +.++++.+- ...-.-..+.++.|+.+.++.++.-..|....
T Consensus 141 Vil~vGVNG~GKTTTIaKLA-~~l~~~-------g~~VllaA~-DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA---- 207 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLA-KYLKQQ-------GKSVLLAAG-DTFRAAAIEQLEVWGERLGVPVISGKEGADPA---- 207 (340)
T ss_pred EEEEEecCCCchHhHHHHHH-HHHHHC-------CCeEEEEec-chHHHHHHHHHHHHHHHhCCeEEccCCCCCcH----
Confidence 47899999999998755433 333332 556665543 11111112333333334566655432111110
Q ss_pred hhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHhhcCCCc------cEEEEEeecchh
Q 019041 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDR------QTLYWSATWPRE 218 (347)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~------~~i~lsaT~~~~ 218 (347)
.| .++-++... -.++|++++|=|-++-+.. .-..+..+.+-..+.. -++.+-||....
T Consensus 208 ------aV-------afDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 208 ------AV-------AFDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred ------HH-------HHHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 11 122222111 2568899999999876654 3444555544443322 234447887665
Q ss_pred HHHHHH
Q 019041 219 VETLAR 224 (347)
Q Consensus 219 ~~~~~~ 224 (347)
.-.-++
T Consensus 273 al~QAk 278 (340)
T COG0552 273 ALSQAK 278 (340)
T ss_pred HHHHHH
Confidence 443333
No 388
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.13 Score=48.51 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
+..+++||.|.|||.++..
T Consensus 39 ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3588999999999975543
No 389
>PHA00350 putative assembly protein
Probab=95.76 E-value=0.24 Score=43.70 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhHHhHHH-HHHhhh
Q 019041 67 LIGIAETGSGKTLSYLLP-AFVHVS 90 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~~~~-~~~~~~ 90 (347)
.++.|.+|||||+.++.. ++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 478999999999876653 444433
No 390
>PRK10436 hypothetical protein; Provisional
Probab=95.75 E-value=0.022 Score=51.51 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=25.5
Q ss_pred cHHHHhhHhhhh--cCCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 51 TPIQAQGWPMAL--KGRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 51 ~~~Q~~~i~~~~--~~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
.+.|.+.+..+. .+.-++++||||||||.+ +..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 455555555544 345689999999999975 44555554
No 391
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.75 E-value=0.017 Score=51.62 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=29.4
Q ss_pred cHHHHhhHhhhhcCC--cEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 51 TPIQAQGWPMALKGR--DLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 51 ~~~Q~~~i~~~~~~~--~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
.+.|...+..++... =++|.||||||||.+ +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 677777777766653 478999999999965 6666666554
No 392
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.75 E-value=0.044 Score=52.16 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=59.9
Q ss_pred HHHHhhcCCCeEEEEecCcccHHHHHHHHhh----CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecc-cccCCCC
Q 019041 269 KLLKEVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV-AARGLGR 343 (347)
Q Consensus 269 ~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidi 343 (347)
.++.....+.++++.+++..-|.+.++.+++ .|.++..++|+++..++..+++...+|+.+|+|+|.. +...+++
T Consensus 276 ~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~ 355 (630)
T TIGR00643 276 AMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEF 355 (630)
T ss_pred HHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccc
Confidence 3333444577999999999999998877764 3789999999999999999999999999999999953 3333433
No 393
>PRK06620 hypothetical protein; Validated
Probab=95.75 E-value=0.033 Score=45.03 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchhHH
Q 019041 65 RDLIGIAETGSGKTLS 80 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (347)
..+++.||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999974
No 394
>PRK13764 ATPase; Provisional
Probab=95.73 E-value=0.027 Score=52.39 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=20.3
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
.+++++++||||||||. ++.+++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 46789999999999996 4555555543
No 395
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.14 Score=46.95 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhHHhHH
Q 019041 66 DLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~ 83 (347)
-.++.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999975543
No 396
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.72 E-value=0.052 Score=44.89 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
.++++.+|+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 479999999999997443
No 397
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.72 E-value=0.12 Score=40.81 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
+..++.||+|+|||..+ ..+...+.
T Consensus 15 ~~~L~~G~~G~gkt~~a-~~~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLA-LALAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHHc
Confidence 45899999999999643 33444443
No 398
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.67 E-value=0.1 Score=45.96 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=20.7
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
+-.|+.+++.+|+|+|||.. +..+...+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL-~~~i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL-LQKIAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHH-HHHHHHhhc
Confidence 34688999999999999963 333444433
No 399
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.29 Score=45.25 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=32.3
Q ss_pred CCCCccccccCCCCHHHHHHHHH---CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHH
Q 019041 22 VPRPIRIFQEANFPDYCLEVIAK---LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPA 85 (347)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~l~~---~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~ 85 (347)
...|...|...+--+.....++. ..+..+..++.. .+...+.+++.||+|+|||+.+-..+
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~---~~~~~~giLl~GpPGtGKT~lAkava 297 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKL---GLRPPKGVLLYGPPGTGKTLLAKAVA 297 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhc---CCCCCCeeEEECCCCCCHHHHHHHHH
Confidence 34556667776533333333332 222222222220 12334579999999999998554433
No 400
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.63 E-value=0.078 Score=50.38 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=59.6
Q ss_pred HHHHHHHhh-cCCCeEEEEecCcccHHHHHHHHhhC-C-CCceeecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019041 266 RLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMD-G-WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 337 (347)
Q Consensus 266 ~l~~~~~~~-~~~~~~lvf~~~~~~~~~~~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 337 (347)
..++++.+. ..|+.+||.++.+..+.++.+.|++. | ..+.++|+++++.+|.+.+.+..+|+.+|+|+|..+
T Consensus 176 vyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 176 RLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred HHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 344444332 24778999999999999999999754 4 679999999999999999999999999999999654
No 401
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.13 Score=48.01 Aligned_cols=18 Identities=33% Similarity=0.194 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
+..++.||.|+|||.++-
T Consensus 39 hayLf~Gp~G~GKTt~Ar 56 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSAR 56 (563)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999997544
No 402
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.24 Score=43.02 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=28.0
Q ss_pred CcHHHHhhHhhhhc--C---CcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 50 PTPIQAQGWPMALK--G---RDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 50 ~~~~Q~~~i~~~~~--~---~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
++|+|...+..+.. + +..++.||.|.||+..+. .+...+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~-~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ-HLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH-HHHHHHcC
Confidence 36788888877654 2 468899999999997544 33344433
No 403
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.083 Score=45.50 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=26.8
Q ss_pred CcHHHHhhHhhhhc----C---CcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 50 PTPIQAQGWPMALK----G---RDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 50 ~~~~Q~~~i~~~~~----~---~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
++|+|+..+..+.+ + +-.++.||.|.||+..+. .+...+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~-~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR-ALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH-HHHHHHcC
Confidence 46777777766543 3 357899999999996544 33344433
No 404
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.33 Score=45.94 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
..+++||.|.|||.++.
T Consensus 41 ayLf~Gp~G~GKtt~A~ 57 (614)
T PRK14971 41 AYLFCGPRGVGKTTCAR 57 (614)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47999999999997444
No 405
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.59 E-value=0.036 Score=43.79 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHCCCCCCcHHHHhhHhh-hhcCCcEEEEcCCCCchhHHhHHHHHHh
Q 019041 42 IAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVH 88 (347)
Q Consensus 42 l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~ 88 (347)
|.+.| .+.+.|...+.. +..+..+++.+|||+|||.. +-.++..
T Consensus 4 l~~~g--~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl-l~aL~~~ 48 (186)
T cd01130 4 LIAQG--TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL-LNALLAF 48 (186)
T ss_pred HHHcC--CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 33444 345666666654 44578999999999999963 4334433
No 406
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.068 Score=47.44 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=23.2
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
.+..++|+||+|.+.... .+.+...++.-++. .++++++|
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~-~~fIL~a~ 155 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPR-TVWLLCAP 155 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCC-CeEEEEEC
Confidence 467899999999874432 23344444443333 44555555
No 407
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.12 Score=47.62 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=23.4
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEE
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ls 212 (347)
..+.++|+||+|.+.... .+.+...+..-++...+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 568899999999874432 233444444444445455544
No 408
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.55 E-value=0.067 Score=46.44 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=28.6
Q ss_pred CCcHHHHhhHhhhhc----C---CcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 49 EPTPIQAQGWPMALK----G---RDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~----~---~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
.++|+|+..+..+.+ + +-.++.||.|.||+..+. .+...+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~-~~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY-ALSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH-HHHHHHcC
Confidence 457888888877653 3 357899999999996544 34444433
No 409
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.55 E-value=0.13 Score=50.03 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.++.+++.||+|+|||..
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 457899999999999964
No 410
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.53 E-value=0.27 Score=42.47 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=22.8
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEe
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsa 213 (347)
...++++||+|.+... ....+...++...+...+++.+.
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEeC
Confidence 3579999999987432 12344445555445555555443
No 411
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.52 E-value=0.29 Score=37.86 Aligned_cols=140 Identities=13% Similarity=0.061 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHH-HHHHHhccCCCceEEEEECCCCC-ch
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ-EEALKFGSRAGIRSTCIYGGAPK-GP 142 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~-~~~~~~~~~~~~~~~~~~~~~~~-~~ 142 (347)
.-+.|.-..|-|||.+++-.++..+.. +.+++++==-+--..+=. ..+..+ .++.......+..- ..
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~--------G~rV~iiQFlKg~~~~GE~~~l~~~---~~v~~~~~g~~~~~~~~ 90 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQ--------GTPVLIVQFLKGGIQQGPDRPIQLG---QNLDWVRCDLPRCLDTP 90 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcC--------CCEEEEEEEecCCCcchHHHHHHhC---CCcEEEECCCCCeeeCC
Confidence 346677789999998887777776655 667777642221100000 112221 12222221111000 00
Q ss_pred hhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC--hHHHHHHHhhcCCCccEEEEEeecchhHH
Q 019041 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREVE 220 (347)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lsaT~~~~~~ 220 (347)
... .--....+..+...... ..-..++++|+||+-...+.++ ...+..+++..++...+|+..-.+++.+.
T Consensus 91 ~~~------~~~~~~~~~~~~~a~~~-l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Li 163 (178)
T PRK07414 91 HLD------ESEKKALQELWQYTQAV-VDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLL 163 (178)
T ss_pred CcC------HHHHHHHHHHHHHHHHH-HhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHH
Confidence 000 00001122223322211 1125689999999998888774 56677777776666666666666666544
Q ss_pred HH
Q 019041 221 TL 222 (347)
Q Consensus 221 ~~ 222 (347)
..
T Consensus 164 e~ 165 (178)
T PRK07414 164 AI 165 (178)
T ss_pred Hh
Confidence 43
No 412
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.52 E-value=0.025 Score=46.11 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 019041 63 KGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (347)
++.-+++.++|||||+.+.+
T Consensus 126 kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 126 KRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cCceEEEECCCCCCchhhHH
Confidence 34458999999999997644
No 413
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.52 E-value=0.13 Score=48.94 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchhHHhHH
Q 019041 66 DLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~ 83 (347)
.+++.||.|+|||.++-.
T Consensus 42 AYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 468999999999975543
No 414
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.51 E-value=0.094 Score=50.98 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
.+.+++.||+|+|||..+
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999743
No 415
>PRK08840 replicative DNA helicase; Provisional
Probab=95.50 E-value=0.22 Score=45.32 Aligned_cols=151 Identities=15% Similarity=0.036 Sum_probs=71.7
Q ss_pred HHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEE
Q 019041 54 QAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTC 133 (347)
Q Consensus 54 Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 133 (347)
-.....-+..|.-+++.|.||.|||..++-.+....... +..+++++. ..-..|+...+-... .++....
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~-------~~~v~~fSl-EMs~~ql~~Rlla~~--s~v~~~~ 276 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ-------DKPVLIFSL-EMPAEQLMMRMLASL--SRVDQTK 276 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC-------CCeEEEEec-cCCHHHHHHHHHHhh--CCCCHHH
Confidence 333444455567788999999999964433333322221 445677653 244455554443321 1222222
Q ss_pred EECCCCCchhhHh-------hcCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhhccC----ChHHHHH
Q 019041 134 IYGGAPKGPQIRD-------LRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG----FEPQIRK 197 (347)
Q Consensus 134 ~~~~~~~~~~~~~-------~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~----~~~~~~~ 197 (347)
+..+.-...++.. +.....+.|- |...+....+........+++||||-.|.+...+ ....+..
T Consensus 277 i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~ 356 (464)
T PRK08840 277 IRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAE 356 (464)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHH
Confidence 2233222233222 1122344443 3334443332222111247899999999874222 1122333
Q ss_pred HHhhcC-----CCccEEEEEee
Q 019041 198 IVTQIR-----PDRQTLYWSAT 214 (347)
Q Consensus 198 ~~~~~~-----~~~~~i~lsaT 214 (347)
+.+.++ -++.++++|.-
T Consensus 357 isr~LK~lAkel~ipVi~LsQL 378 (464)
T PRK08840 357 ISRSLKALAKELNVPVVALSQL 378 (464)
T ss_pred HHHHHHHHHHHhCCeEEEEEec
Confidence 333332 24567777744
No 416
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.47 E-value=0.22 Score=45.82 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=40.0
Q ss_pred hHhhhhc-----CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 57 GWPMALK-----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 57 ~i~~~~~-----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.++.++. |..+++.+|+|+|||...+..+...+.+ +.+++|++ ..+-..|+...+..++
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 3555554 4678999999999997555444443333 55788876 5566678888877764
No 417
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.45 E-value=0.074 Score=44.54 Aligned_cols=141 Identities=18% Similarity=0.161 Sum_probs=67.2
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc---HHHHHHHHHHHHHhccCCCceEEEEECC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT---RELAVQIQEEALKFGSRAGIRSTCIYGG 137 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 137 (347)
+..|.-+++.|+||.|||..++-.+...+... +..+++++.- ..+...+..... ++....+..+
T Consensus 16 ~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlEm~~~~l~~R~la~~s------~v~~~~i~~g 82 (259)
T PF03796_consen 16 LRPGELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLEMSEEELAARLLARLS------GVPYNKIRSG 82 (259)
T ss_dssp B-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESSS-HHHHHHHHHHHHH------TSTHHHHHCC
T ss_pred CCcCcEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHhh------cchhhhhhcc
Confidence 34556789999999999975554444444432 3578888752 333333222221 1111111112
Q ss_pred CCCchhhHhh------cCCCcEEE-e----ChHHHHHHHhcCCCCCCcccEEEEecchhhhcc----CChHHHHHHHhhc
Q 019041 138 APKGPQIRDL------RRGVEIVI-A----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM----GFEPQIRKIVTQI 202 (347)
Q Consensus 138 ~~~~~~~~~~------~~~~~iiv-~----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~----~~~~~~~~~~~~~ 202 (347)
.....++..+ .....+.+ . |++.+...+.........+++||||-.|.+... .....+..+...+
T Consensus 83 ~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~L 162 (259)
T PF03796_consen 83 DLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISREL 162 (259)
T ss_dssp GCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 1111211111 11223333 2 334444444322222256889999999987663 2233333333222
Q ss_pred C-----CCccEEEEEee
Q 019041 203 R-----PDRQTLYWSAT 214 (347)
Q Consensus 203 ~-----~~~~~i~lsaT 214 (347)
+ .+..++.+|.-
T Consensus 163 k~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 163 KALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHTSEEEEEEEB
T ss_pred HHHHHHcCCeEEEcccc
Confidence 1 24566666665
No 418
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.44 E-value=0.097 Score=50.21 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=55.1
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh-CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRM-DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 336 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 336 (347)
.++++||.+++++-+.++.+.|++ .|..+..+||+++..+|.+.+.....|+.+|+|+|..
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 467999999999999999999976 4788999999999999999999999999999999963
No 419
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.40 E-value=0.041 Score=46.04 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=29.2
Q ss_pred HHHHCCCCCCcHHHHhhHhhhhc--CCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 41 VIAKLGFVEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 41 ~l~~~~~~~~~~~Q~~~i~~~~~--~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
.+.+.|+ .+.|.+.+..++. +..+++.+|||||||. ++..++..+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT-~l~all~~i 104 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTT-TLYSALSEL 104 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHH-HHHHHHhhh
Confidence 3455554 5556666655543 3468999999999996 455555554
No 420
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.40 E-value=0.16 Score=45.30 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
.+.+++.||+|+|||..+
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 467999999999999743
No 421
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.38 E-value=0.024 Score=47.80 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=29.7
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
..+.+++++|+||||||. ++..++..+... ..+++++-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT-~l~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTT-LLNALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHH-HHHHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccch-HHHHHhhhcccc-------ccceEEeccccce
Confidence 456899999999999996 455566655542 2567777665555
No 422
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.33 E-value=0.077 Score=48.93 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=54.8
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh-CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRM-DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 336 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 336 (347)
.++++||.++++.-+.++++.|++ .+..+.++||.++..+|.+.+.....|+.+|+|+|..
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrs 85 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRS 85 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChH
Confidence 477999999999999999999975 4778999999999999999999999999999999954
No 423
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.33 E-value=0.046 Score=46.80 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=28.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHH
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 114 (347)
.|.-+.+.+|+|+|||..++..+.+.... +.+++++..-..+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEcccchhHH
Confidence 34568899999999997555444443322 556778765544443
No 424
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.25 Score=46.70 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
...++.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4679999999999975443
No 425
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.31 E-value=0.31 Score=48.20 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=21.2
Q ss_pred CcHHHHhhHhhhhc------CCcEEEEcCCCCchhHHh
Q 019041 50 PTPIQAQGWPMALK------GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 50 ~~~~Q~~~i~~~~~------~~~~lv~~~tGsGKT~~~ 81 (347)
+--.|...+..+.. ..+.++.||+|.|||..+
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 33345544544432 258999999999999644
No 426
>PF05729 NACHT: NACHT domain
Probab=95.30 E-value=0.21 Score=38.25 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=18.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcC
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQ 92 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~ 92 (347)
-+++.|++|+|||.. +..+...+...
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHhc
Confidence 368999999999964 44444444443
No 427
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.22 Score=43.04 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=27.7
Q ss_pred CcHHHHhhHhhhhcC-----CcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 50 PTPIQAQGWPMALKG-----RDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 50 ~~~~Q~~~i~~~~~~-----~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
++|+|+..+..+... +..++.||.|.|||..+. .+...+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~-~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR-FAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH-HHHHHHc
Confidence 367888888777642 358899999999996443 3344433
No 428
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.04 Score=53.26 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=52.8
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----C-CCcee-ecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMD----G-WPALS-IHGDKNQSERDWVLAEFRSGRSPIMTATDVA 337 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~----~-~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 337 (347)
.++++++.+++.--+.+.++.|++. + ..+.+ +|+.++..+++.++++|.+|+.+|+|+|+..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 4689999999999999999888753 2 44333 8999999999999999999999999999753
No 429
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.03 Score=50.91 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCcccEEEEecchhhhccCChHHHHHHHhhcC-CCccEEEEEee
Q 019041 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR-PDRQTLYWSAT 214 (347)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lsaT 214 (347)
..++.+.|+||+|++....|. .+++-+- +...++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~afN----ALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFN----ALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHHH----HHhcccccCccCeEEEEec
Confidence 457899999999987554444 3333332 33445555555
No 430
>PRK07004 replicative DNA helicase; Provisional
Probab=95.27 E-value=0.14 Score=46.63 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=67.9
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhh-hcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHV-SAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAP 139 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~ 139 (347)
+..|.-+++.|.||.|||.. ++-+...+ ... +..+++++. ..-..|+...+-.. ..++....+..+.-
T Consensus 210 ~~~g~liviaarpg~GKT~~-al~ia~~~a~~~-------~~~v~~fSl-EM~~~ql~~R~la~--~~~v~~~~i~~g~l 278 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAF-SMNIGEYVAVEY-------GLPVAVFSM-EMPGTQLAMRMLGS--VGRLDQHRMRTGRL 278 (460)
T ss_pred CCCCceEEEEeCCCCCccHH-HHHHHHHHHHHc-------CCeEEEEeC-CCCHHHHHHHHHHh--hcCCCHHHHhcCCC
Confidence 44566788999999999964 44333332 221 445666642 33344444443221 11222222222322
Q ss_pred CchhhHhh------cCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhhccC----ChHHHHHHHhhcC-
Q 019041 140 KGPQIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG----FEPQIRKIVTQIR- 203 (347)
Q Consensus 140 ~~~~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~----~~~~~~~~~~~~~- 203 (347)
...++..+ .....+.|. |+..+....+........+++||||-.|.+.... ....+..+.+.++
T Consensus 279 ~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~ 358 (460)
T PRK07004 279 TDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKS 358 (460)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHH
Confidence 32332211 123445552 4444443332221122347899999999875322 1223333333332
Q ss_pred ----CCccEEEEEee
Q 019041 204 ----PDRQTLYWSAT 214 (347)
Q Consensus 204 ----~~~~~i~lsaT 214 (347)
.++.++++|.-
T Consensus 359 lAkel~ipVi~lsQL 373 (460)
T PRK07004 359 LAKELDVPVIALSQL 373 (460)
T ss_pred HHHHhCCeEEEEecc
Confidence 25667777754
No 431
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.27 E-value=0.16 Score=44.75 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
+..++.||+|+|||.++.
T Consensus 37 ~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999996443
No 432
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.25 E-value=0.12 Score=49.31 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=35.4
Q ss_pred ccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeec
Q 019041 175 VTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (347)
Q Consensus 175 ~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~ 215 (347)
.=++|+|+.|.+.+......+..++++.++....++.|-+-
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 34899999999988888889999999999888888888763
No 433
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.24 E-value=0.3 Score=48.29 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCcHHHHhhHhhhhc------CCcEEEEcCCCCchhHHh
Q 019041 49 EPTPIQAQGWPMALK------GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~------~~~~lv~~~tGsGKT~~~ 81 (347)
.|--.|..-+..+.. ..++++.||+|+|||..+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHH
Confidence 343345555554432 248999999999999644
No 434
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.24 E-value=0.3 Score=44.44 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
+..++.||+|+|||.++..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARI 58 (451)
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 4578999999999975443
No 435
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.23 E-value=0.25 Score=44.87 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=51.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (347)
|.-+++.+++|+|||..++. +...+... +.+++|+..- +-..|+...+.+++...+ +. .+..
T Consensus 94 GsvilI~G~pGsGKTTL~lq-~a~~~a~~-------g~kvlYvs~E-Es~~qi~~ra~rlg~~~~-~l-~~~~------- 155 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQ-VACQLAKN-------QMKVLYVSGE-ESLQQIKMRAIRLGLPEP-NL-YVLS------- 155 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHH-HHHHHHhc-------CCcEEEEECc-CCHHHHHHHHHHcCCChH-He-EEcC-------
Confidence 46789999999999975443 33333221 4468888754 445666665555421110 00 0100
Q ss_pred hHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc
Q 019041 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (347)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (347)
. ++.+.+...+.. .+.+++|+|....+..
T Consensus 156 ------e-----~~~~~I~~~i~~-----~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 156 ------E-----TNWEQICANIEE-----ENPQACVIDSIQTLYS 184 (454)
T ss_pred ------C-----CCHHHHHHHHHh-----cCCcEEEEecchhhcc
Confidence 0 123455554432 2467999999997643
No 436
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.22 E-value=0.056 Score=50.49 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|+.+.+.||+|+|||.
T Consensus 358 i~~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKST 376 (529)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 4568899999999999996
No 437
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.20 E-value=0.1 Score=48.55 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=65.4
Q ss_pred HHHHHHHHhhcCCCeEEEEecCcccHH----HHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEe-ccccc
Q 019041 265 CRLIKLLKEVMDGSRILIFTETKKGCD----QVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAAR 339 (347)
Q Consensus 265 ~~l~~~~~~~~~~~~~lvf~~~~~~~~----~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~ 339 (347)
..++.++.....|.++...+++.--|+ .+.+.|...|+.+..++|.+....|..+++...+|+++++|.| ..+..
T Consensus 299 VA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 299 VALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 356677777778889999999975554 4555666679999999999999999999999999999999999 45555
Q ss_pred CCCCCc
Q 019041 340 GLGRIT 345 (347)
Q Consensus 340 Gidip~ 345 (347)
.++..+
T Consensus 379 ~V~F~~ 384 (677)
T COG1200 379 KVEFHN 384 (677)
T ss_pred ceeecc
Confidence 665544
No 438
>PRK08006 replicative DNA helicase; Provisional
Probab=95.18 E-value=0.28 Score=44.82 Aligned_cols=146 Identities=15% Similarity=0.087 Sum_probs=71.2
Q ss_pred hhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCC
Q 019041 59 PMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGA 138 (347)
Q Consensus 59 ~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 138 (347)
.-+..|.-+++.|.||.|||. |++-+...+... .+..+++++. ..-.+|+...+-... .++....+..+.
T Consensus 219 ~Gl~~G~LiiIaarPgmGKTa-falnia~~~a~~------~g~~V~~fSl-EM~~~ql~~Rlla~~--~~v~~~~i~~~~ 288 (471)
T PRK08006 219 AGLQPSDLIIVAARPSMGKTT-FAMNLCENAAML------QDKPVLIFSL-EMPGEQIMMRMLASL--SRVDQTRIRTGQ 288 (471)
T ss_pred cCCCCCcEEEEEeCCCCCHHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHHh--cCCCHHHhhcCC
Confidence 334456678899999999996 444333332211 1445666653 344455554443221 223222233332
Q ss_pred CCchhhHh-------hcCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhhccC----ChHHHHHHHhhc
Q 019041 139 PKGPQIRD-------LRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG----FEPQIRKIVTQI 202 (347)
Q Consensus 139 ~~~~~~~~-------~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~----~~~~~~~~~~~~ 202 (347)
-...++.. +.....+.|- |+..+....+........+++||||-.|.+.... ....+..+.+.+
T Consensus 289 l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~L 368 (471)
T PRK08006 289 LDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSL 368 (471)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHH
Confidence 22233221 2123345543 3444444333221112358899999999775321 222344443333
Q ss_pred C-----CCccEEEEEee
Q 019041 203 R-----PDRQTLYWSAT 214 (347)
Q Consensus 203 ~-----~~~~~i~lsaT 214 (347)
+ ..+.++++|..
T Consensus 369 K~lAkel~ipVi~LsQL 385 (471)
T PRK08006 369 KALAKELQVPVVALSQL 385 (471)
T ss_pred HHHHHHhCCeEEEEEec
Confidence 2 25667777755
No 439
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.16 E-value=0.24 Score=45.78 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=31.9
Q ss_pred CCccccccCCCCHHHHHHHHHCC--CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHh
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLG--FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (347)
.|...|+++.-.+...+.+...- +..+..++... ....+.+++.+|+|+|||..+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 45666888766666655554311 22222222211 122357999999999999743
No 440
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.15 E-value=0.044 Score=51.26 Aligned_cols=44 Identities=39% Similarity=0.457 Sum_probs=29.2
Q ss_pred HHHCCCCCCcHHHHhhHhhhhc--CCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 42 IAKLGFVEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 42 l~~~~~~~~~~~Q~~~i~~~~~--~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
|.+.|+ .+.|...+..+.. +..++++||||||||.+ +..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 445554 4566666665544 35688999999999965 45556554
No 441
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.15 E-value=0.065 Score=40.07 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCC------CceeecCCCCHHHHHHHHHHHhcCCC-CEEEEecccccCCCCCc
Q 019041 290 CDQVTRQLRMDGW------PALSIHGDKNQSERDWVLAEFRSGRS-PIMTATDVAARGLGRIT 345 (347)
Q Consensus 290 ~~~~~~~L~~~~~------~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gidip~ 345 (347)
.+.++..+++.+. ...++.-..+..+...+++.|....- .||+++..+.+|+|+|+
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g 66 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPG 66 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCC
Confidence 4455555554442 22333333444457888999986543 79999977999999997
No 442
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.12 E-value=0.18 Score=45.80 Aligned_cols=143 Identities=17% Similarity=0.095 Sum_probs=67.0
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
+..|.-+++.|+||+|||..++-.+....... +..+++++. ..-..|+.+.+..... ++....+..+.-.
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~-------g~~vl~~Sl-Em~~~~i~~R~~~~~~--~v~~~~~~~g~l~ 261 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIKE-------GKPVAFFSL-EMSAEQLAMRMLSSES--RVDSQKLRTGKLS 261 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC-------CCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHhccCCCC
Confidence 34456789999999999964443333333221 445777653 3333444444433222 2222222222222
Q ss_pred chhhHhh------cCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhhccC----ChHHHHHHHhhcC--
Q 019041 141 GPQIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG----FEPQIRKIVTQIR-- 203 (347)
Q Consensus 141 ~~~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~----~~~~~~~~~~~~~-- 203 (347)
..++..+ .....+.|. |.+.+...+...... ..+++||||-.+.+.... ....+..+.+.++
T Consensus 262 ~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~l 340 (434)
T TIGR00665 262 DEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKAL 340 (434)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 2222111 112334442 344554433322111 247899999999774322 1122333333332
Q ss_pred ---CCccEEEEEee
Q 019041 204 ---PDRQTLYWSAT 214 (347)
Q Consensus 204 ---~~~~~i~lsaT 214 (347)
.++.++++|..
T Consensus 341 A~e~~i~vi~lsql 354 (434)
T TIGR00665 341 AKELNVPVIALSQL 354 (434)
T ss_pred HHHhCCeEEEEecc
Confidence 35667777754
No 443
>PRK04328 hypothetical protein; Provisional
Probab=95.10 E-value=0.049 Score=45.22 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=34.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|..+++.+++|+|||..++..+...+.+ +.++++++ +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 45678999999999997554444444433 55677776 4445555666666653
No 444
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.10 E-value=0.31 Score=48.02 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
.++++.||+|.|||.++
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999999654
No 445
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.09 E-value=0.1 Score=51.63 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=59.1
Q ss_pred HhhcCCCeEEEEecCcccHHHHHHHHhh----CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec-ccccCCCCCc
Q 019041 272 KEVMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VAARGLGRIT 345 (347)
Q Consensus 272 ~~~~~~~~~lvf~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~ 345 (347)
.....+.+++|.+++..-|.+.++.+++ .++.+..+++..+..++..+++.+..|+.+|+|+|. .+...+.+.+
T Consensus 495 ~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~ 573 (926)
T TIGR00580 495 KAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKD 573 (926)
T ss_pred HHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCccc
Confidence 3334568999999999999999988765 356778899999999999999999999999999995 4444444444
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.09 E-value=0.084 Score=43.68 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+-.|+.+++.+|.|+|||.
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4568999999999999995
No 447
>PRK09354 recA recombinase A; Provisional
Probab=95.06 E-value=0.061 Score=46.55 Aligned_cols=43 Identities=23% Similarity=0.132 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 114 (347)
|.-+.+.+|+|+|||..++..+.+.... +..++|+..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEECCccchHH
Confidence 4567899999999997655544444332 567888876655544
No 448
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.05 E-value=0.039 Score=44.07 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=23.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 109 (347)
-+++++|||||||.+ +..++..+.... +.+++.+-..
T Consensus 3 lilI~GptGSGKTTl-l~~ll~~~~~~~------~~~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTT-LAAMIDYINKNK------THHILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhhhcC------CcEEEEEcCC
Confidence 378999999999964 444454443321 3456665543
No 449
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.02 E-value=0.15 Score=41.51 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=26.2
Q ss_pred hcCC-cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHH
Q 019041 62 LKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (347)
Q Consensus 62 ~~~~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 115 (347)
..++ -+.++++.|||||.+.= ++++.... +..++++.|...+..+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~R-al~~s~~~--------d~~~~v~i~~~~~s~~ 93 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRR-ALLASLNE--------DQVAVVVIDKPTLSDA 93 (269)
T ss_pred hcCCceEEEEecCCCchhHHHH-HHHHhcCC--------CceEEEEecCcchhHH
Confidence 3454 67899999999997543 33332221 3445555555554443
No 450
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.95 E-value=0.071 Score=50.25 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCcccEEEEecchhhhccCChHHHHHHHhhcCCC
Q 019041 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD 205 (347)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~ 205 (347)
+.+-.++|+||+....+......+...+..+..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~ 514 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKG 514 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcC
Confidence 3455789999999877776666666666655434
No 451
>PRK05748 replicative DNA helicase; Provisional
Probab=94.95 E-value=0.21 Score=45.46 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=67.6
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH-HhccCCCceEEEEECCCC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGIRSTCIYGGAP 139 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~~~~~~~~~ 139 (347)
+..|.-+++.|+||.|||. +++.++...... .+..+++++. ..-..|+...+. ..+ ++....+..+.-
T Consensus 200 ~~~G~livIaarpg~GKT~-~al~ia~~~a~~------~g~~v~~fSl-Ems~~~l~~R~l~~~~---~v~~~~i~~~~l 268 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTA-FALNIAQNVATK------TDKNVAIFSL-EMGAESLVMRMLCAEG---NIDAQRLRTGQL 268 (448)
T ss_pred CCCCceEEEEeCCCCCchH-HHHHHHHHHHHh------CCCeEEEEeC-CCCHHHHHHHHHHHhc---CCCHHHhhcCCC
Confidence 3445678999999999996 444444333211 1445666653 334445444443 221 222221222222
Q ss_pred CchhhHhh------cCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-----ChHHHHHHHhhcC
Q 019041 140 KGPQIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----FEPQIRKIVTQIR 203 (347)
Q Consensus 140 ~~~~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~~~~~~~~~~~~~ 203 (347)
...++..+ ..+..+.|. |++.+...+........++++||||-.|.+.... ....+..+.+.++
T Consensus 269 ~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK 348 (448)
T PRK05748 269 TDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLK 348 (448)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHH
Confidence 22222111 112344442 3444544333221111258899999999774221 1122333333321
Q ss_pred -----CCccEEEEEee
Q 019041 204 -----PDRQTLYWSAT 214 (347)
Q Consensus 204 -----~~~~~i~lsaT 214 (347)
.++.++++|..
T Consensus 349 ~lAke~~i~vi~lsQl 364 (448)
T PRK05748 349 ALAKELKVPVIALSQL 364 (448)
T ss_pred HHHHHhCCeEEEeccc
Confidence 24667777765
No 452
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.94 E-value=0.11 Score=49.47 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHh-hCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019041 276 DGSRILIFTETKKGCDQVTRQLR-MDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 337 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 337 (347)
.|+.+||.++.+....++.+.|+ +.|.++.++|+++++.+|.+.+.+...|+.+|+|+|..+
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA 306 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA 306 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh
Confidence 47799999999999999988886 468999999999999999999999999999999999543
No 453
>PRK08760 replicative DNA helicase; Provisional
Probab=94.91 E-value=0.17 Score=46.28 Aligned_cols=116 Identities=18% Similarity=0.092 Sum_probs=57.1
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
+..|.-+++.|.||.|||..++-.+.....+. +..+++++. ..-..|+...+.......+ ...+..+...
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~-------g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~--~~~i~~g~l~ 295 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKS-------KKGVAVFSM-EMSASQLAMRLISSNGRIN--AQRLRTGALE 295 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhc-------CCceEEEec-cCCHHHHHHHHHHhhCCCc--HHHHhcCCCC
Confidence 34456788999999999964443333332221 345666643 3334555555544322222 2222223222
Q ss_pred chhhHhh------cCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 141 GPQIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 141 ~~~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
..++..+ .....+.|. |++.+.......... ..+++||||-.+.+.
T Consensus 296 ~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~-~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 DEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKRE-HDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEecHHhcC
Confidence 2222111 112344443 344554433322211 347899999999774
No 454
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=94.87 E-value=0.09 Score=45.75 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=39.8
Q ss_pred HHHHHHHCCCCCCcHHHHhhHhhhh-cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 38 CLEVIAKLGFVEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 38 ~~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
-...+...|+ +.+.+.+.+..+. .+.++++.++||+|||. ++..++..+.. ..+++++-...++
T Consensus 153 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTT-ll~al~~~i~~--------~~riv~iEd~~El 217 (340)
T TIGR03819 153 TLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTT-LLSALLALVAP--------DERIVLVEDAAEL 217 (340)
T ss_pred CHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHccCCC--------CCcEEEECCccee
Confidence 3455556664 3456666665544 46799999999999995 44444443322 3456776666565
No 455
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.83 E-value=0.17 Score=43.47 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999643
No 456
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.83 E-value=0.014 Score=45.51 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=28.8
Q ss_pred HhhcCCCcEEEeChHHHHHHHhcCCC--CCCcccEEEEecchhhhc
Q 019041 145 RDLRRGVEIVIATPGRLIDMLEAQHT--NLRRVTYLVLDEADRMLD 188 (347)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~iIvDE~h~~~~ 188 (347)
+.....++|+|+++..++........ ...+-.++|+||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 44455689999999998765332221 123457999999998754
No 457
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.82 E-value=0.092 Score=43.91 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
.|.-+++.+++|+|||..++..+...+.+ +.++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEEe
Confidence 45678999999999997555444444333 556888773
No 458
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.80 E-value=0.59 Score=36.58 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=36.7
Q ss_pred ccEEEEecchhhhccCC-hHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHh
Q 019041 175 VTYLVLDEADRMLDMGF-EPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF 226 (347)
Q Consensus 175 ~~~iIvDE~h~~~~~~~-~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~ 226 (347)
-|++|+--.+....-++ ...+.+-.+..++..+++++|+.-....+...+..
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i 196 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFI 196 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHH
Confidence 56777777776555444 34555567777899999999999777777665544
No 459
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.80 E-value=0.28 Score=48.36 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=25.5
Q ss_pred CCcHHHHhhHhhhhc------CCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 49 EPTPIQAQGWPMALK------GRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~------~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
.+--.|...+..+.. ..++++.||+|+|||.. +-.+...+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal-~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAV-VEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHH-HHHHHHHH
Confidence 344446666665542 25899999999999964 33333333
No 460
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.78 E-value=0.062 Score=49.18 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=26.2
Q ss_pred cHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 51 TPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 51 ~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
.+.|.+.+..+... .-++++||||||||.+ +..++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccC
Confidence 56666666665543 3478999999999964 444555543
No 461
>PF12846 AAA_10: AAA-like domain
Probab=94.73 E-value=0.044 Score=46.90 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
+.++++.|+||+|||.+.. .++..+... +..++++=|..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchH
Confidence 3578999999999997655 444443332 5567777565444
No 462
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.027 Score=47.27 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
..|+++.+|||||||+.+. .++++.+
T Consensus 97 KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 3589999999999997443 5555554
No 463
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.64 E-value=0.7 Score=38.80 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCchhH
Q 019041 65 RDLIGIAETGSGKTL 79 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~ 79 (347)
+++++.+|+|+|||.
T Consensus 112 ~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 112 LNTLIISPPQCGKTT 126 (270)
T ss_pred eEEEEEcCCCCCHHH
Confidence 688999999999995
No 464
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.63 E-value=0.06 Score=46.30 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=19.9
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHh
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVH 88 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~ 88 (347)
+..+.++++.+|||+|||. ++..++..
T Consensus 141 v~~~~~ili~G~tGsGKTT-ll~al~~~ 167 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTT-FLKSLVDE 167 (308)
T ss_pred hhCCCEEEEECCCCCCHHH-HHHHHHcc
Confidence 4467899999999999996 44444433
No 465
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.61 E-value=0.061 Score=45.09 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=20.3
Q ss_pred hHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
+...+..+.++++.||+|+|||..+.
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 34445568899999999999997554
No 466
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.1 Score=45.45 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=26.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 28 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
+|+..-|+|.+.+-+.......-+.---+ .--+|+++.+|+|+|||+.
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~-----apfRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQ-----APFRNILFYGPPGTGKTMF 400 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhccccccc-----chhhheeeeCCCCCCchHH
Confidence 35555566666666654322111000000 0125899999999999973
No 467
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=0.28 Score=42.17 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=28.3
Q ss_pred CCcHHHHhhHhhhhc----C---CcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 49 EPTPIQAQGWPMALK----G---RDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~----~---~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
.++|+|...+..+.+ + +-.++.||.|.||+..+. .+...+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~-~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE-LFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHc
Confidence 567888888877653 3 368999999999996443 3333433
No 468
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.57 E-value=0.53 Score=40.17 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcC---CCccEEEEEee
Q 019041 160 RLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR---PDRQTLYWSAT 214 (347)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~---~~~~~i~lsaT 214 (347)
.++..+..+....+.--++|+||++.+........+..++...+ .+..++++|..
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 34444454444334446788899998766654555555544443 33445666654
No 469
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.34 Score=46.48 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=23.1
Q ss_pred HHHHhhHhhhhc-------C--------CcEEEEcCCCCchhHHhH
Q 019041 52 PIQAQGWPMALK-------G--------RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 52 ~~Q~~~i~~~~~-------~--------~~~lv~~~tGsGKT~~~~ 82 (347)
-.|..|+..+.+ | .++++.||||.|||..+-
T Consensus 494 iGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAk 539 (786)
T COG0542 494 IGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAK 539 (786)
T ss_pred eChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHH
Confidence 367777776543 1 378999999999998544
No 470
>PRK05636 replicative DNA helicase; Provisional
Probab=94.47 E-value=0.27 Score=45.23 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=54.0
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCc
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
..|.-+++.|.||.|||..++-.+....... +..+++++ ...-..|+...+... ..++....+..+.-..
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~-------g~~v~~fS-lEMs~~ql~~R~ls~--~s~v~~~~i~~g~l~~ 332 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKH-------NKASVIFS-LEMSKSEIVMRLLSA--EAEVRLSDMRGGKMDE 332 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEE-eeCCHHHHHHHHHHH--hcCCCHHHHhcCCCCH
Confidence 3455678999999999964443332222221 34566663 233334433333221 1122222223333222
Q ss_pred hhhHhh------cCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 142 PQIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 142 ~~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
.++..+ .....+.|- |...+....+..... ..+++||||-.|.+.
T Consensus 333 ~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~-~~~~lvvIDYLql~~ 388 (505)
T PRK05636 333 DAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQK-HDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 232211 122345543 333443333322111 347899999999875
No 471
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.45 E-value=0.089 Score=39.38 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=35.5
Q ss_pred cHHHHHHHHhhCCC---CceeecCCCCHHHHHHHHHHHhcCCC---CEEEEecc--cccCCCCCc
Q 019041 289 GCDQVTRQLRMDGW---PALSIHGDKNQSERDWVLAEFRSGRS---PIMTATDV--AARGLGRIT 345 (347)
Q Consensus 289 ~~~~~~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~T~~--~~~Gidip~ 345 (347)
..+.+++.+++.+. ...++.-.....+...+++.|++... .||+++.- +.+|||+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g 67 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPD 67 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCC
Confidence 34566666665543 22223222222344678888987543 68888866 999999997
No 472
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.41 E-value=0.14 Score=39.70 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=27.8
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.+++.+++|||||..+.. +.... +..++++......-.++.+.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~-l~~~~----------~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAER-LAAQS----------GLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHH-HHHHc----------CCCcEeCcCCCCChHHHHHHHHHH
Confidence 579999999999964333 22221 223566665555555555555443
No 473
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.37 E-value=0.091 Score=41.12 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=27.4
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCC-ccEEEEEee
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD-RQTLYWSAT 214 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~-~~~i~lsaT 214 (347)
.+.+++++||.....+......+...+...... .++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 457899999999877766555665665554333 455555543
No 474
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=94.36 E-value=0.13 Score=49.40 Aligned_cols=71 Identities=23% Similarity=0.177 Sum_probs=55.5
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
.|++-|++++... ....+|.|+.|||||.+....+...+....- . ...++.++=|+.-+.++.+.+.+...
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v-~---p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGV-D---PEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCc-C---hHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999774 6678999999999999877666665555321 1 33599999999999999998888755
No 475
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=0.12 Score=48.38 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=70.7
Q ss_pred hhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE-EcCcHHHHHHHHHHH-HHhccCCC-----ceEE
Q 019041 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV-LAPTRELAVQIQEEA-LKFGSRAG-----IRST 132 (347)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li-l~p~~~l~~q~~~~~-~~~~~~~~-----~~~~ 132 (347)
.+..|+.+.+.+|.|+|||.+ ..++.++..- .+.++++ =+|-+.+-..|.+.- .-.++.+- +.--
T Consensus 490 ti~pGe~vALVGPSGsGKSTi--asLL~rfY~P------tsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTI--ASLLLRFYDP------TSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIREN 561 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHH--HHHHHHhcCC------CCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHH
Confidence 356689999999999999974 3345554442 1333333 235555544444321 11111110 0000
Q ss_pred EEECCCC-Cc-------------hhhHhhcCCCcEEEeChHHHHH------HHhcCCCCCCcccEEEEecchhhhccCCh
Q 019041 133 CIYGGAP-KG-------------PQIRDLRRGVEIVIATPGRLID------MLEAQHTNLRRVTYLVLDEADRMLDMGFE 192 (347)
Q Consensus 133 ~~~~~~~-~~-------------~~~~~~~~~~~iiv~T~~~l~~------~~~~~~~~~~~~~~iIvDE~h~~~~~~~~ 192 (347)
..+|-.+ .. +.+..+..+++-.|+..+..+. +.-.. --+++..++|+|||=..++..-.
T Consensus 562 I~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR-ALlr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 562 IAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR-ALLRNPRVLILDEATSALDAESE 640 (716)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH-HHhcCCCEEEEechhhhcchhhH
Confidence 1111111 11 1123344455555555432211 10000 01467789999999988887777
Q ss_pred HHHHHHHhhcCCCc
Q 019041 193 PQIRKIVTQIRPDR 206 (347)
Q Consensus 193 ~~~~~~~~~~~~~~ 206 (347)
..+...+.....++
T Consensus 641 ~lVq~aL~~~~~~r 654 (716)
T KOG0058|consen 641 YLVQEALDRLMQGR 654 (716)
T ss_pred HHHHHHHHHhhcCC
Confidence 77888887665553
No 476
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.35 E-value=0.098 Score=43.83 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=35.9
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 126 (347)
-+|+.+++.+++|+|||...+-.+...+.. +.++++++- .+...++.+.+..++..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--------ge~vlyvs~-~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--------GEPVLYVST-EESPEELLENARSFGWD 76 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCcEEEEEe-cCCHHHHHHHHHHcCCC
Confidence 356789999999999996444333333333 456777754 45556666666665443
No 477
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.34 E-value=1.3 Score=41.13 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=77.1
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
+++..+.. ..++. .+.+..++--|---|||+ ++.+++..+...-. +-++-|+++-+..++-+.+++..-+
T Consensus 187 Fdi~~~s~---~~l~~-FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s~~-----gI~IGYvAHqKhvs~~Vf~EI~~~l 256 (668)
T PHA03372 187 FDIEFLSE---SSLNI-FKQKATVFLVPRRHGKTW-FIIPIISFLLKNII-----GISIGYVAHQKHVSQFVLKEVEFRC 256 (668)
T ss_pred cCCcccCH---HHHHH-hhccceEEEecccCCcee-hHHHHHHHHHHhhc-----CceEEEEeeHHHHHHHHHHHHHHHH
Confidence 45544443 33333 344556667799999997 56666666655322 6789999998888777666654221
Q ss_pred c-CCCce-EEEEECCCCCchhhHhhcCCCcEEEeChHH-----HHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHH
Q 019041 125 S-RAGIR-STCIYGGAPKGPQIRDLRRGVEIVIATPGR-----LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (347)
Q Consensus 125 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~-----l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (347)
. +.+-+ +...-+ .-|.+.-|+. +......+...-+++++++|||+|-+ . .+.+..
T Consensus 257 rrwF~~~~vi~~k~--------------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI-~---~~a~~t 318 (668)
T PHA03372 257 RRMFPRKHTIENKD--------------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI-K---KDAFNT 318 (668)
T ss_pred hhhcCccceeeecC--------------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc-C---HHHHHH
Confidence 1 11211 111111 1122221111 11112233444567999999999954 2 233333
Q ss_pred HHhhc-CCCccEEEEEee
Q 019041 198 IVTQI-RPDRQTLYWSAT 214 (347)
Q Consensus 198 ~~~~~-~~~~~~i~lsaT 214 (347)
++-.+ ..++++|+.|.|
T Consensus 319 ilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 319 ILGFLAQNTTKIIFISST 336 (668)
T ss_pred hhhhhcccCceEEEEeCC
Confidence 33333 357788888877
No 478
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.31 E-value=0.25 Score=40.32 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
++.+++.||.|+|||. .+..+....
T Consensus 20 ~~~~~l~G~rg~GKTs-Ll~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTS-LLKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHH-HHHHHHHHC
T ss_pred CcEEEEEcCCcCCHHH-HHHHHHHHh
Confidence 4688999999999996 344444443
No 479
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.24 E-value=0.069 Score=47.60 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=34.8
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
++++.||||+|||.++++|.+... ...++|+=|.-++........++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHH
Confidence 578999999999988877654431 33578888998898766655554
No 480
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.87 Score=42.14 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=31.4
Q ss_pred CCccccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
-|-.+|+..|--+++...|+.. .+..|-.++.-.+ ..-..+++++|+|-|||+.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi---~~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI---DAPSGVLLCGPPGCGKTLL 561 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC---CCCCceEEeCCCCccHHHH
Confidence 3555677776666666666532 2222222222222 1235699999999999974
No 481
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=94.16 E-value=0.068 Score=51.65 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=53.5
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..++-|.+++..-+..+.+.+.+|+|+|||-++.-.+--...+.+ .++++|++.+..-..|..+.+.+.
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p------~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSP------NQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred ccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCC------CcceEEEEecccchhHHHHHHHhc
Confidence 457789999988788889999999999999765543333333333 678999999999999988887764
No 482
>CHL00176 ftsH cell division protein; Validated
Probab=94.14 E-value=0.46 Score=45.11 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
+.+++.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999743
No 483
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.13 E-value=0.12 Score=48.60 Aligned_cols=58 Identities=21% Similarity=0.148 Sum_probs=43.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEC
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYG 136 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 136 (347)
.++++.||||||||..+++|.+..+ +..++|+=|.-++........++. |.+|..+..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfdP 216 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVWEP 216 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEeC
Confidence 5799999999999999998876553 234788889999988777666654 445555543
No 484
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.12 E-value=0.099 Score=48.01 Aligned_cols=49 Identities=29% Similarity=0.380 Sum_probs=37.2
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.++++.||||||||..+++|.+.. . ...++|.=|.-++........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~--------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y--------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c--------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999988886532 1 224777789999887776666654
No 485
>PRK06321 replicative DNA helicase; Provisional
Probab=94.06 E-value=0.71 Score=42.23 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=69.3
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
+..|.-+++.|.||.|||. |++-+...+... .+..+++++. ..-..|+...+... ..++....+..+.-.
T Consensus 223 l~~G~LiiiaarPgmGKTa-fal~ia~~~a~~------~g~~v~~fSL-EMs~~ql~~Rlla~--~s~v~~~~i~~~~l~ 292 (472)
T PRK06321 223 FSPSNLMILAARPAMGKTA-LALNIAENFCFQ------NRLPVGIFSL-EMTVDQLIHRIICS--RSEVESKKISVGDLS 292 (472)
T ss_pred CCCCcEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHh--hcCCCHHHhhcCCCC
Confidence 3345667889999999996 444444443211 1445666642 33344444444322 123333233333322
Q ss_pred chhhHhh------cCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhhccC-------ChHHHHHHHhhc
Q 019041 141 GPQIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-------FEPQIRKIVTQI 202 (347)
Q Consensus 141 ~~~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-------~~~~~~~~~~~~ 202 (347)
..++..+ .....+.|- |.+.+....+..... ..+++||||-.+.+...+ ....+..+.+.+
T Consensus 293 ~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~-~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~L 371 (472)
T PRK06321 293 GRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKES-YDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRML 371 (472)
T ss_pred HHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHH
Confidence 2333211 112345553 444554444332221 347899999999875321 112333333333
Q ss_pred C-----CCccEEEEEee
Q 019041 203 R-----PDRQTLYWSAT 214 (347)
Q Consensus 203 ~-----~~~~~i~lsaT 214 (347)
+ -++.++++|.-
T Consensus 372 K~lAkel~vpVi~lsQL 388 (472)
T PRK06321 372 KNLARELNIPILCLSQL 388 (472)
T ss_pred HHHHHHhCCcEEEEeec
Confidence 2 25667777775
No 486
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.061 Score=47.42 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=34.6
Q ss_pred cccccCCCCHHHHHHHHH-C-CCCCCc-HHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHh
Q 019041 27 RIFQEANFPDYCLEVIAK-L-GFVEPT-PIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVH 88 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~-~-~~~~~~-~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~ 88 (347)
.+|+.+.+++.+.+.+.+ + .|..=. -|.+... ... +..++-||+|+|||. ++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGk-awK--RGYLLYGPPGTGKSS-~IaAmAn~ 258 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGK-AWK--RGYLLYGPPGTGKSS-FIAAMANY 258 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCc-chh--ccceeeCCCCCCHHH-HHHHHHhh
Confidence 679999999988887764 1 111111 1222111 122 246999999999994 55544444
No 487
>PRK09165 replicative DNA helicase; Provisional
Probab=94.02 E-value=0.49 Score=43.67 Aligned_cols=123 Identities=20% Similarity=0.105 Sum_probs=58.7
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCc-------cCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEE
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL-------VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTC 133 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~-------~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 133 (347)
+..|.-+++.|.||.|||..++-.+.......... ....+..++|++ ...-..|+...+..... ++....
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~s--~v~~~~ 290 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQS--EISSSK 290 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHhc--CCCHHH
Confidence 34456689999999999965443333332221100 001145677764 34444555555433322 222222
Q ss_pred EECCCCCchhhHhh------cCCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 134 IYGGAPKGPQIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 134 ~~~~~~~~~~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
+..+.-...++..+ .....+.|- |.+.+...++..... ..+++||||-.|.+.
T Consensus 291 i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~-~~~~lvvIDyLqli~ 354 (497)
T PRK09165 291 IRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQ-HGLDLLVVDYLQLIR 354 (497)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcc
Confidence 22232222222111 112334432 344554444322211 348899999999765
No 488
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.99 E-value=0.61 Score=41.25 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=71.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC--cHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP--TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (347)
.+++++=-|||||.++.-.+. ++.+. +.++++++. .|.=|..+.+.+. ...++.+... +...++.
T Consensus 102 vImmvGLQGsGKTTt~~KLA~-~lkk~-------~~kvllVaaD~~RpAA~eQL~~La---~q~~v~~f~~--~~~~~Pv 168 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAK-YLKKK-------GKKVLLVAADTYRPAAIEQLKQLA---EQVGVPFFGS--GTEKDPV 168 (451)
T ss_pred EEEEEeccCCChHhHHHHHHH-HHHHc-------CCceEEEecccCChHHHHHHHHHH---HHcCCceecC--CCCCCHH
Confidence 478899999999987664443 33331 555666552 3333333233332 3345444332 2111111
Q ss_pred hHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHH
Q 019041 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETL 222 (347)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~ 222 (347)
+ ....-...+. ...++++|||=|-++.- ...-..+..+-..+.|.--++.+-|+........
T Consensus 169 --------~----Iak~al~~ak-----~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~ 231 (451)
T COG0541 169 --------E----IAKAALEKAK-----EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT 231 (451)
T ss_pred --------H----HHHHHHHHHH-----HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH
Confidence 0 0111112222 24578999999876543 2355677777777777777778888877765555
Q ss_pred HHHh
Q 019041 223 ARQF 226 (347)
Q Consensus 223 ~~~~ 226 (347)
++.+
T Consensus 232 A~aF 235 (451)
T COG0541 232 AKAF 235 (451)
T ss_pred HHHH
Confidence 5443
No 489
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.95 E-value=0.16 Score=41.43 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=34.7
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.|..+++.+++|+|||..++..+...+.+ +.++++++... -..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECCC-CHHHHHHHHHHc
Confidence 35678999999999997544444443333 55678876543 456777777665
No 490
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.92 E-value=0.84 Score=37.64 Aligned_cols=43 Identities=21% Similarity=0.123 Sum_probs=25.6
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCc----cCCCCCEEEEEc
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRL----VQGEGPIVLVLA 107 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~----~~~~~~~~lil~ 107 (347)
.-.++.||.|+|||..++..+++.....+-. ....+.+++|+.
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 3468999999999986665544432211110 111256788887
No 491
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.90 E-value=0.65 Score=41.45 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=25.1
Q ss_pred cHHHHhhHhhhhc-------CCcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 51 TPIQAQGWPMALK-------GRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 51 ~~~Q~~~i~~~~~-------~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
+..+.+.+..+.. +.+..|+|.+|+|||.. +.-.+..+..
T Consensus 155 Re~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~-l~rvl~~~~~ 201 (529)
T KOG2227|consen 155 RELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTAL-LSRVLDSLSK 201 (529)
T ss_pred hHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHH-HHHHHHhhhh
Confidence 4455555555443 35789999999999964 4334444443
No 492
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.89 E-value=0.099 Score=42.72 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=26.6
Q ss_pred hhcC-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 61 ALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 61 ~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
++.. -++++.|++|||||. ++..++..+... -..+++++|
T Consensus 9 l~~~~fr~viIG~sGSGKT~-li~~lL~~~~~~-------f~~I~l~t~ 49 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTT-LIKSLLYYLRHK-------FDHIFLITP 49 (241)
T ss_pred hcCCCceEEEECCCCCCHHH-HHHHHHHhhccc-------CCEEEEEec
Confidence 3444 378999999999995 555555543332 246777777
No 493
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.23 Score=48.91 Aligned_cols=59 Identities=12% Similarity=-0.016 Sum_probs=38.0
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.....|+..|.-+..+..|+++-+..+..-+...=-.+..-+.+++++|+|+|||+.+-
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~ar 317 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMAR 317 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHH
Confidence 44556888887788888888765433322222221123445679999999999997543
No 494
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.85 E-value=0.39 Score=42.03 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=26.8
Q ss_pred HHHHhhHhhhh---cCCcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 52 PIQAQGWPMAL---KGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 52 ~~Q~~~i~~~~---~~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
..-.++++.+. +|++.++.||.|+|||.. +..++..+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL-LQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44455666655 578999999999999964 4334444443
No 495
>PHA02535 P terminase ATPase subunit; Provisional
Probab=93.84 E-value=0.63 Score=43.13 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH
Q 019041 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (347)
Q Consensus 32 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~ 111 (347)
=.+++...+.|.+.-...+.+||+.-+..-...+.-++.-.==.|||..+..-++...... +...++|.|+++
T Consensus 121 n~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~-------G~nqiflSas~~ 193 (581)
T PHA02535 121 NDISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLT-------GRNQIFLSASKA 193 (581)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhc-------CCceEEECCCHH
Confidence 3588888899988777799999999886632233333444455799998776665554442 446799999999
Q ss_pred HHHHHHHHHHHhcc
Q 019041 112 LAVQIQEEALKFGS 125 (347)
Q Consensus 112 l~~q~~~~~~~~~~ 125 (347)
.+.++.+.+.++..
T Consensus 194 QA~~f~~yi~~~a~ 207 (581)
T PHA02535 194 QAHVFKQYIIAFAR 207 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888877744
No 496
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.73 E-value=0.17 Score=39.10 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=30.1
Q ss_pred EEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
+++.+++|||||.-+. ..+.. .+.+++++.-...+-..+.+.+.+.
T Consensus 2 ~li~G~~~sGKS~~a~-~~~~~----------~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAE-RLAAE----------LGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHH-HHHHh----------cCCCeEEEEccCcCCHHHHHHHHHH
Confidence 5789999999996433 22222 1456888877777766666665543
No 497
>PRK05595 replicative DNA helicase; Provisional
Probab=93.71 E-value=0.21 Score=45.49 Aligned_cols=142 Identities=14% Similarity=0.102 Sum_probs=66.0
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhh-hcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHV-SAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAP 139 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~ 139 (347)
+..|.-+++.|.||.|||.. ++.+...+ ... +.++++++. ..-..|+...+.... .++....+..+.-
T Consensus 198 ~~~g~liviaarpg~GKT~~-al~ia~~~a~~~-------g~~vl~fSl-Ems~~~l~~R~~a~~--~~v~~~~~~~~~l 266 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTF-ALNIAEYAALRE-------GKSVAIFSL-EMSKEQLAYKLLCSE--ANVDMLRLRTGNL 266 (444)
T ss_pred CCCCcEEEEEecCCCChHHH-HHHHHHHHHHHc-------CCcEEEEec-CCCHHHHHHHHHHHh--cCCCHHHHhcCCC
Confidence 34456678899999999964 44333332 221 456777754 333444444433221 1222222222222
Q ss_pred CchhhHhhc------CCCcEEEe-----ChHHHHHHHhcCCCCCCcccEEEEecchhhhccC----ChHHHHHHHhhcC-
Q 019041 140 KGPQIRDLR------RGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG----FEPQIRKIVTQIR- 203 (347)
Q Consensus 140 ~~~~~~~~~------~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~----~~~~~~~~~~~~~- 203 (347)
....+..+. ....+.|- |.+.+...+...... ..+++||||-.|.+.... ....+..+.+.++
T Consensus 267 ~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~-~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~ 345 (444)
T PRK05595 267 EDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIE-HGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKA 345 (444)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHH
Confidence 222221111 11233332 334443333322111 348899999999875322 1122333322221
Q ss_pred ----CCccEEEEEee
Q 019041 204 ----PDRQTLYWSAT 214 (347)
Q Consensus 204 ----~~~~~i~lsaT 214 (347)
.++.++++|..
T Consensus 346 lAke~~i~vi~lsQL 360 (444)
T PRK05595 346 LAKEMECPVIALSQL 360 (444)
T ss_pred HHHHhCCeEEEeecc
Confidence 25567777655
No 498
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.15 Score=46.14 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=27.0
Q ss_pred CCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
+.+-.++++||.-.-++......+...+...-.+.-+++.|=-
T Consensus 490 L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHr 532 (573)
T COG4987 490 LHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHR 532 (573)
T ss_pred HcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecc
Confidence 4566799999998777766555555544443345556666543
No 499
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.65 E-value=0.36 Score=36.28 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=21.9
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhc
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (347)
.+.+++++||.-.-++......+...+..+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 457899999998777666566666666655
No 500
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.62 E-value=0.75 Score=39.63 Aligned_cols=57 Identities=9% Similarity=0.121 Sum_probs=31.5
Q ss_pred EeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 155 IATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 155 v~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
|-....+.+.+..... .....++|+|++|.+... ..+.+.+.++.-+ ...+|++|..
T Consensus 106 id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 106 LEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 3344445555544433 256899999999987332 2344445555443 4444454444
Done!