Query 019041
Match_columns 347
No_of_seqs 144 out of 1541
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 09:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 4.3E-52 1.5E-56 372.2 37.9 326 14-347 43-370 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.3E-49 4.4E-54 356.1 34.7 327 15-347 3-346 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 3.8E-49 1.3E-53 352.2 31.7 319 18-347 28-346 (410)
4 1xti_A Probable ATP-dependent 100.0 2.2E-47 7.5E-52 338.8 32.5 310 27-347 8-320 (391)
5 3eiq_A Eukaryotic initiation f 100.0 8.6E-48 3E-52 344.0 29.4 318 19-347 32-350 (414)
6 1s2m_A Putative ATP-dependent 100.0 3.1E-47 1.1E-51 338.8 32.1 312 23-347 17-328 (400)
7 3pey_A ATP-dependent RNA helic 100.0 7.2E-47 2.5E-51 336.0 32.9 308 25-347 3-313 (395)
8 3fht_A ATP-dependent RNA helic 100.0 2.1E-46 7.1E-51 334.8 35.0 315 19-347 17-336 (412)
9 1hv8_A Putative ATP-dependent 100.0 5.1E-46 1.7E-50 327.3 32.5 303 26-347 5-308 (367)
10 1fuu_A Yeast initiation factor 100.0 1.5E-47 5.1E-52 340.3 21.7 314 22-347 16-329 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 1E-45 3.4E-50 342.9 28.3 326 21-347 11-361 (579)
12 3fmp_B ATP-dependent RNA helic 100.0 8.6E-46 2.9E-50 336.5 23.5 308 25-347 90-403 (479)
13 3i5x_A ATP-dependent RNA helic 100.0 6.4E-45 2.2E-49 337.3 28.4 313 34-347 79-412 (563)
14 2z0m_A 337AA long hypothetical 100.0 2.1E-43 7.3E-48 307.0 31.7 286 34-347 1-286 (337)
15 3fho_A ATP-dependent RNA helic 100.0 4.2E-45 1.4E-49 333.0 20.8 329 4-347 95-427 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 2.5E-43 8.6E-48 324.1 27.0 304 24-347 16-337 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 2.7E-42 9.4E-47 314.3 26.7 294 26-347 1-306 (523)
18 3fe2_A Probable ATP-dependent 100.0 1.2E-41 4.2E-46 281.3 24.1 238 1-238 3-240 (242)
19 2zj8_A DNA helicase, putative 100.0 1.3E-40 4.5E-45 315.9 26.2 303 27-347 1-340 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 6.3E-40 2.1E-44 311.4 30.2 305 25-347 6-358 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 3.8E-40 1.3E-44 311.9 22.9 302 28-347 2-342 (702)
22 3oiy_A Reverse gyrase helicase 100.0 1.5E-39 5.2E-44 290.2 21.4 278 37-347 9-322 (414)
23 2ykg_A Probable ATP-dependent 100.0 1.5E-39 5.3E-44 308.6 21.6 306 39-347 3-481 (696)
24 4a2p_A RIG-I, retinoic acid in 100.0 4.5E-39 1.5E-43 298.2 22.0 299 46-347 4-473 (556)
25 3l9o_A ATP-dependent RNA helic 100.0 8.2E-39 2.8E-43 311.7 23.1 300 28-347 163-550 (1108)
26 3tbk_A RIG-I helicase domain; 100.0 6.1E-38 2.1E-42 290.6 26.0 166 49-217 4-176 (555)
27 4a2q_A RIG-I, retinoic acid in 100.0 2.1E-37 7.3E-42 296.6 25.8 301 44-347 243-714 (797)
28 1wp9_A ATP-dependent RNA helic 100.0 1.8E-36 6.1E-41 276.4 29.9 290 49-347 9-439 (494)
29 3bor_A Human initiation factor 100.0 4.5E-37 1.5E-41 253.0 22.0 214 17-235 20-234 (237)
30 3iuy_A Probable ATP-dependent 100.0 6.7E-37 2.3E-41 250.8 22.8 216 18-234 10-227 (228)
31 2xgj_A ATP-dependent RNA helic 100.0 3.6E-36 1.2E-40 290.9 31.2 282 42-347 80-452 (1010)
32 4a2w_A RIG-I, retinoic acid in 100.0 2.5E-37 8.7E-42 299.0 22.2 301 44-347 243-714 (936)
33 2pl3_A Probable ATP-dependent 100.0 3.6E-36 1.2E-40 247.8 24.9 228 2-236 5-233 (236)
34 1vec_A ATP-dependent RNA helic 100.0 3.6E-36 1.2E-40 242.7 24.3 202 27-233 3-205 (206)
35 4ddu_A Reverse gyrase; topoiso 100.0 8E-37 2.7E-41 297.7 24.4 271 44-347 74-379 (1104)
36 1qde_A EIF4A, translation init 100.0 3E-36 1E-40 246.4 24.0 212 19-236 6-217 (224)
37 1q0u_A Bstdead; DEAD protein, 100.0 1.4E-36 4.9E-41 247.2 21.2 207 25-236 2-212 (219)
38 4gl2_A Interferon-induced heli 100.0 1.9E-37 6.4E-42 294.5 18.2 296 49-347 7-484 (699)
39 1wrb_A DJVLGB; RNA helicase, D 100.0 2E-36 6.7E-41 252.0 21.7 227 12-238 6-242 (253)
40 3ber_A Probable ATP-dependent 100.0 3.3E-36 1.1E-40 249.2 22.9 207 24-235 40-247 (249)
41 2oxc_A Probable ATP-dependent 100.0 4.7E-36 1.6E-40 245.9 22.5 210 19-234 16-227 (230)
42 2eyq_A TRCF, transcription-rep 100.0 1.6E-35 5.5E-40 290.3 30.0 286 32-347 586-884 (1151)
43 3dkp_A Probable ATP-dependent 100.0 6.6E-36 2.3E-40 247.6 22.0 229 5-237 3-242 (245)
44 4a4z_A Antiviral helicase SKI2 100.0 7E-36 2.4E-40 288.8 24.3 283 44-346 35-444 (997)
45 2gxq_A Heat resistant RNA depe 100.0 4.1E-35 1.4E-39 236.7 23.7 204 28-235 2-205 (207)
46 1t6n_A Probable ATP-dependent 100.0 1.5E-35 5.2E-40 241.5 21.3 212 18-234 5-219 (220)
47 2oca_A DAR protein, ATP-depend 100.0 6.9E-37 2.4E-41 280.2 13.8 281 48-347 112-418 (510)
48 1gm5_A RECG; helicase, replica 100.0 3.8E-36 1.3E-40 282.2 17.9 283 35-347 355-659 (780)
49 3fmo_B ATP-dependent RNA helic 100.0 8.9E-35 3E-39 246.7 24.6 213 16-236 78-298 (300)
50 4f92_B U5 small nuclear ribonu 100.0 4.5E-35 1.6E-39 294.8 25.8 305 34-346 66-423 (1724)
51 4f92_B U5 small nuclear ribonu 100.0 1.4E-34 4.8E-39 291.2 27.8 311 24-346 898-1258(1724)
52 3ly5_A ATP-dependent RNA helic 100.0 9.2E-35 3.2E-39 242.4 21.0 203 28-231 53-258 (262)
53 1gku_B Reverse gyrase, TOP-RG; 100.0 1.1E-35 3.7E-40 289.9 16.5 272 40-346 48-342 (1054)
54 1tf5_A Preprotein translocase 100.0 3E-33 1E-37 258.2 24.1 281 44-344 79-497 (844)
55 2fwr_A DNA repair protein RAD2 100.0 2.9E-34 9.9E-39 260.3 17.0 261 49-347 93-414 (472)
56 3h1t_A Type I site-specific re 100.0 1.4E-33 4.9E-38 262.2 17.8 284 49-347 178-519 (590)
57 2fsf_A Preprotein translocase 100.0 1.5E-31 5.1E-36 246.3 23.3 282 44-345 70-507 (853)
58 1nkt_A Preprotein translocase 100.0 5.6E-31 1.9E-35 242.8 25.9 283 44-346 107-527 (922)
59 2xau_A PRE-mRNA-splicing facto 100.0 7.1E-31 2.4E-35 248.1 23.9 301 24-347 69-389 (773)
60 2jlq_A Serine protease subunit 100.0 4.9E-32 1.7E-36 242.9 14.0 250 46-345 1-252 (451)
61 2whx_A Serine protease/ntpase/ 100.0 4.7E-32 1.6E-36 250.1 12.0 264 32-346 155-419 (618)
62 2v6i_A RNA helicase; membrane, 100.0 1.2E-30 4.2E-35 232.4 18.4 233 63-344 1-234 (431)
63 3o8b_A HCV NS3 protease/helica 100.0 1.1E-30 3.8E-35 239.0 15.2 240 49-347 217-458 (666)
64 2wv9_A Flavivirin protease NS2 100.0 2.8E-31 9.6E-36 246.4 11.3 257 41-347 202-475 (673)
65 1yks_A Genome polyprotein [con 100.0 7.2E-32 2.5E-36 240.8 4.5 237 60-347 4-242 (440)
66 3dmq_A RNA polymerase-associat 100.0 1.1E-29 3.7E-34 246.2 18.9 289 48-347 152-576 (968)
67 1z63_A Helicase of the SNF2/RA 100.0 6.4E-29 2.2E-33 226.9 21.3 279 48-347 36-414 (500)
68 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3.4E-29 1.2E-33 241.1 20.2 283 49-347 271-669 (1038)
69 2z83_A Helicase/nucleoside tri 100.0 1.6E-29 5.6E-34 226.9 12.9 235 58-345 15-254 (459)
70 3mwy_W Chromo domain-containin 100.0 2E-27 6.8E-32 227.1 22.4 286 49-347 236-645 (800)
71 3rc3_A ATP-dependent RNA helic 100.0 4E-27 1.4E-31 218.0 21.7 246 52-347 143-391 (677)
72 1z3i_X Similar to RAD54-like; 99.9 5E-26 1.7E-30 212.3 25.5 291 49-347 55-489 (644)
73 2ipc_A Preprotein translocase 99.9 5.1E-24 1.7E-28 196.3 24.2 131 44-187 75-215 (997)
74 3b6e_A Interferon-induced heli 99.9 1.1E-25 3.7E-30 182.7 11.8 167 45-214 29-216 (216)
75 1rif_A DAR protein, DNA helica 99.9 6.2E-26 2.1E-30 191.4 10.1 195 4-219 66-266 (282)
76 3jux_A Protein translocase sub 99.9 1.5E-22 5.1E-27 183.4 27.1 278 44-344 71-539 (822)
77 3llm_A ATP-dependent RNA helic 99.9 1.8E-21 6.3E-26 159.4 16.3 165 43-219 55-222 (235)
78 2fz4_A DNA repair protein RAD2 99.9 1.2E-21 4.2E-26 160.2 15.1 139 48-218 92-231 (237)
79 3crv_A XPD/RAD3 related DNA he 99.9 1.1E-20 3.9E-25 173.4 23.1 129 49-188 3-187 (551)
80 2vl7_A XPD; helicase, unknown 99.9 4.2E-21 1.5E-25 175.5 19.3 127 45-187 4-188 (540)
81 1c4o_A DNA nucleotide excision 99.8 8.1E-20 2.8E-24 170.4 19.3 73 275-347 437-509 (664)
82 2d7d_A Uvrabc system protein B 99.8 6.3E-18 2.1E-22 157.6 21.3 73 275-347 443-515 (661)
83 4a15_A XPD helicase, ATP-depen 99.8 1.2E-18 4E-23 161.2 15.7 81 49-136 3-87 (620)
84 2p6n_A ATP-dependent RNA helic 99.6 5.8E-15 2E-19 116.2 9.6 116 224-347 9-124 (191)
85 2hjv_A ATP-dependent RNA helic 99.6 2E-14 6.7E-19 110.5 11.8 97 245-347 9-105 (163)
86 2jgn_A DBX, DDX3, ATP-dependen 99.6 8.4E-15 2.9E-19 114.8 9.0 100 243-347 17-116 (185)
87 1t5i_A C_terminal domain of A 99.6 2.1E-14 7.1E-19 111.2 11.1 96 246-347 6-101 (172)
88 1fuk_A Eukaryotic initiation f 99.5 4.6E-14 1.6E-18 108.7 11.8 81 266-347 20-100 (165)
89 2rb4_A ATP-dependent RNA helic 99.5 3.9E-14 1.3E-18 110.2 10.2 81 266-347 24-104 (175)
90 3eaq_A Heat resistant RNA depe 99.5 1.4E-13 4.7E-18 110.4 10.7 81 266-347 21-101 (212)
91 3i32_A Heat resistant RNA depe 99.5 3E-13 1E-17 113.6 10.6 81 266-347 18-98 (300)
92 2yjt_D ATP-dependent RNA helic 99.1 2.9E-14 9.8E-19 110.4 0.0 81 266-347 20-100 (170)
93 1w36_D RECD, exodeoxyribonucle 99.0 1.2E-09 4E-14 101.2 10.8 146 51-214 151-298 (608)
94 1z5z_A Helicase of the SNF2/RA 99.0 1.3E-09 4.4E-14 90.4 9.6 84 264-347 98-185 (271)
95 3lfu_A DNA helicase II; SF1 he 98.9 1E-07 3.4E-12 89.6 21.0 71 48-124 8-78 (647)
96 4b3f_X DNA-binding protein smu 98.8 1.1E-08 3.7E-13 95.8 8.7 67 49-123 189-256 (646)
97 3e1s_A Exodeoxyribonuclease V, 98.7 9E-08 3.1E-12 87.8 12.5 123 49-214 189-315 (574)
98 3upu_A ATP-dependent DNA helic 98.7 8.1E-08 2.8E-12 86.1 11.6 70 44-120 20-94 (459)
99 2gk6_A Regulator of nonsense t 98.7 2E-07 6.9E-12 86.7 13.8 70 47-123 178-247 (624)
100 2xzl_A ATP-dependent helicase 98.6 3.6E-07 1.2E-11 87.0 13.8 70 47-123 358-427 (802)
101 2wjy_A Regulator of nonsense t 98.6 5.1E-07 1.8E-11 85.8 13.7 70 47-123 354-423 (800)
102 1uaa_A REP helicase, protein ( 98.4 1E-05 3.5E-10 76.2 16.8 71 49-125 2-72 (673)
103 1pjr_A PCRA; DNA repair, DNA r 98.3 4.7E-05 1.6E-09 72.1 19.3 70 48-123 10-79 (724)
104 3vkw_A Replicase large subunit 97.9 4.1E-05 1.4E-09 67.0 9.5 108 65-214 162-269 (446)
105 2o0j_A Terminase, DNA packagin 97.9 5E-05 1.7E-09 65.6 9.1 70 49-124 163-232 (385)
106 3cpe_A Terminase, DNA packagin 97.9 0.00014 4.7E-09 67.3 12.5 148 49-217 163-315 (592)
107 2orw_A Thymidine kinase; TMTK, 97.8 4.4E-05 1.5E-09 59.2 6.4 40 63-110 2-41 (184)
108 2b8t_A Thymidine kinase; deoxy 97.8 9.6E-05 3.3E-09 58.8 8.1 91 63-186 11-101 (223)
109 1xx6_A Thymidine kinase; NESG, 97.7 8.7E-05 3E-09 57.7 7.4 39 63-109 7-45 (191)
110 2j9r_A Thymidine kinase; TK1, 97.6 9E-05 3.1E-09 58.1 6.3 40 64-111 28-67 (214)
111 3ec2_A DNA replication protein 97.5 0.00039 1.3E-08 53.6 8.3 19 63-81 37-55 (180)
112 2orv_A Thymidine kinase; TP4A 97.4 0.00015 5.3E-09 57.4 5.2 39 64-110 19-57 (234)
113 3te6_A Regulatory protein SIR3 97.4 0.00094 3.2E-08 56.1 9.9 26 64-90 45-70 (318)
114 2kjq_A DNAA-related protein; s 97.3 0.00024 8.2E-09 52.9 4.9 18 63-80 35-52 (149)
115 2zpa_A Uncharacterized protein 97.3 0.0024 8E-08 59.0 11.5 113 49-216 175-289 (671)
116 3e2i_A Thymidine kinase; Zn-bi 97.2 0.00045 1.5E-08 54.0 5.5 40 64-111 28-67 (219)
117 1l8q_A Chromosomal replication 97.2 0.0022 7.6E-08 54.4 10.1 25 64-89 37-61 (324)
118 3u4q_A ATP-dependent helicase/ 97.1 0.00078 2.7E-08 67.7 7.8 70 49-122 10-79 (1232)
119 3h4m_A Proteasome-activating n 97.1 0.0048 1.6E-07 51.2 10.8 56 24-81 11-68 (285)
120 3u61_B DNA polymerase accessor 97.0 0.0042 1.4E-07 52.7 10.2 41 174-214 105-145 (324)
121 1a5t_A Delta prime, HOLB; zinc 97.0 0.0032 1.1E-07 53.7 9.0 33 50-82 3-42 (334)
122 1d2n_A N-ethylmaleimide-sensit 97.0 0.0094 3.2E-07 49.1 11.6 18 65-82 65-82 (272)
123 1w4r_A Thymidine kinase; type 97.0 0.0017 5.9E-08 50.0 6.4 38 64-109 20-57 (195)
124 2v1u_A Cell division control p 96.9 0.0076 2.6E-07 52.3 10.8 19 63-81 43-61 (387)
125 3eie_A Vacuolar protein sortin 96.9 0.0056 1.9E-07 51.9 9.6 56 24-82 12-69 (322)
126 2p65_A Hypothetical protein PF 96.9 0.0081 2.8E-07 46.0 9.8 19 64-82 43-61 (187)
127 2chg_A Replication factor C sm 96.8 0.016 5.4E-07 45.8 11.6 41 173-214 101-141 (226)
128 4b4t_J 26S protease regulatory 96.8 0.0063 2.1E-07 52.7 9.5 56 24-82 142-200 (405)
129 2z4s_A Chromosomal replication 96.8 0.0097 3.3E-07 52.8 11.1 17 65-81 131-147 (440)
130 1g5t_A COB(I)alamin adenosyltr 96.8 0.022 7.4E-07 44.0 11.6 139 64-221 28-169 (196)
131 1jbk_A CLPB protein; beta barr 96.8 0.045 1.5E-06 41.9 13.8 18 64-81 43-60 (195)
132 3kl4_A SRP54, signal recogniti 96.8 0.018 6E-07 50.6 12.2 54 173-226 178-234 (433)
133 2w58_A DNAI, primosome compone 96.6 0.0096 3.3E-07 46.5 8.9 17 65-81 55-71 (202)
134 3co5_A Putative two-component 96.6 0.0013 4.3E-08 48.5 3.3 19 62-80 25-43 (143)
135 3bos_A Putative DNA replicatio 96.6 0.0038 1.3E-07 50.2 6.4 19 63-81 51-69 (242)
136 1fnn_A CDC6P, cell division co 96.5 0.0046 1.6E-07 53.8 7.0 16 66-81 46-61 (389)
137 2qby_B CDC6 homolog 3, cell di 96.5 0.011 3.6E-07 51.4 9.3 18 64-81 45-62 (384)
138 3cf0_A Transitional endoplasmi 96.5 0.0093 3.2E-07 50.0 8.4 56 24-81 9-66 (301)
139 3syl_A Protein CBBX; photosynt 96.5 0.01 3.5E-07 49.8 8.5 17 65-81 68-84 (309)
140 3dm5_A SRP54, signal recogniti 96.4 0.034 1.2E-06 48.9 11.5 131 65-226 101-235 (443)
141 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.034 1.2E-06 45.2 11.0 53 27-82 3-57 (262)
142 4b4t_K 26S protease regulatory 96.3 0.045 1.5E-06 48.0 11.4 56 24-82 166-224 (428)
143 2qp9_X Vacuolar protein sortin 96.2 0.011 3.6E-07 50.9 7.1 55 24-82 45-102 (355)
144 1njg_A DNA polymerase III subu 96.1 0.12 4E-06 41.2 12.7 16 66-81 47-62 (250)
145 2zan_A Vacuolar protein sortin 96.1 0.016 5.5E-07 51.4 8.0 18 64-81 167-184 (444)
146 3pfi_A Holliday junction ATP-d 96.1 0.033 1.1E-06 47.4 9.6 17 65-81 56-72 (338)
147 1sxj_A Activator 1 95 kDa subu 96.1 0.019 6.5E-07 52.1 8.3 41 173-215 147-189 (516)
148 1jr3_A DNA polymerase III subu 96.0 0.09 3.1E-06 45.2 12.3 16 66-81 40-55 (373)
149 2qby_A CDC6 homolog 1, cell di 96.0 0.075 2.6E-06 45.9 11.8 18 64-81 45-62 (386)
150 1sxj_E Activator 1 40 kDa subu 96.0 0.071 2.4E-06 45.6 11.3 43 173-216 133-175 (354)
151 3pvs_A Replication-associated 95.9 0.011 3.8E-07 52.4 6.0 17 65-81 51-67 (447)
152 1sxj_D Activator 1 41 kDa subu 95.8 0.025 8.5E-07 48.4 7.9 42 173-215 132-173 (353)
153 3vfd_A Spastin; ATPase, microt 95.8 0.058 2E-06 46.9 9.9 19 64-82 148-166 (389)
154 3oiy_A Reverse gyrase helicase 95.7 0.052 1.8E-06 47.6 9.5 61 275-335 62-125 (414)
155 3hu3_A Transitional endoplasmi 95.7 0.047 1.6E-06 49.0 9.1 18 64-81 238-255 (489)
156 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.11 3.9E-06 41.2 10.6 22 61-82 20-41 (235)
157 2gno_A DNA polymerase III, gam 95.6 0.055 1.9E-06 45.3 8.9 17 66-82 20-36 (305)
158 1iqp_A RFCS; clamp loader, ext 95.6 0.06 2.1E-06 45.3 9.3 41 173-214 109-149 (327)
159 1gm5_A RECG; helicase, replica 95.6 0.039 1.3E-06 52.4 8.6 70 276-345 416-490 (780)
160 4a1f_A DNAB helicase, replicat 95.5 0.025 8.6E-07 47.9 6.4 51 61-120 43-93 (338)
161 4b4t_M 26S protease regulatory 95.4 0.016 5.4E-07 50.9 4.8 56 24-82 175-233 (434)
162 1hqc_A RUVB; extended AAA-ATPa 95.4 0.057 1.9E-06 45.5 8.2 18 64-81 38-55 (324)
163 3hjh_A Transcription-repair-co 95.2 0.13 4.5E-06 45.9 10.2 57 277-345 382-438 (483)
164 1sxj_C Activator 1 40 kDa subu 95.1 0.14 4.8E-06 43.5 10.0 39 173-212 109-147 (340)
165 3cf2_A TER ATPase, transitiona 95.1 0.074 2.5E-06 50.5 8.8 56 24-82 471-529 (806)
166 1w5s_A Origin recognition comp 95.1 0.064 2.2E-06 46.9 7.9 17 65-81 51-69 (412)
167 2r6a_A DNAB helicase, replicat 95.0 0.12 4.2E-06 45.9 9.7 41 61-108 200-240 (454)
168 2q6t_A DNAB replication FORK h 95.0 0.089 3E-06 46.7 8.7 41 61-108 197-237 (444)
169 1sxj_B Activator 1 37 kDa subu 95.0 0.073 2.5E-06 44.7 7.8 40 174-214 107-146 (323)
170 2fna_A Conserved hypothetical 94.9 1.2 4.1E-05 37.6 15.3 52 158-214 124-178 (357)
171 3cmu_A Protein RECA, recombina 94.6 0.065 2.2E-06 55.8 7.3 41 64-112 1427-1467(2050)
172 2chq_A Replication factor C sm 94.6 0.11 3.6E-06 43.6 7.7 16 66-81 40-55 (319)
173 1nlf_A Regulatory protein REPA 94.4 0.19 6.4E-06 41.4 8.8 24 60-83 26-49 (279)
174 4b4t_L 26S protease subunit RP 94.4 0.034 1.2E-06 48.8 4.3 56 24-82 175-233 (437)
175 4b4t_H 26S protease regulatory 94.3 0.048 1.7E-06 48.0 5.0 56 24-82 203-261 (467)
176 4ddu_A Reverse gyrase; topoiso 94.1 0.14 4.7E-06 50.9 8.4 61 275-335 119-182 (1104)
177 3n70_A Transport activator; si 93.9 0.046 1.6E-06 40.1 3.6 20 62-81 22-41 (145)
178 3io5_A Recombination and repai 93.8 0.14 4.9E-06 42.7 6.6 42 66-113 30-71 (333)
179 1qvr_A CLPB protein; coiled co 93.6 0.14 4.8E-06 49.5 7.4 24 65-89 192-215 (854)
180 4b4t_I 26S protease regulatory 93.4 0.073 2.5E-06 46.4 4.4 56 24-82 176-234 (437)
181 3jvv_A Twitching mobility prot 93.3 0.15 5E-06 43.7 6.2 28 62-90 121-148 (356)
182 2dr3_A UPF0273 protein PH0284; 93.2 0.094 3.2E-06 42.1 4.7 53 62-123 21-73 (247)
183 1ls1_A Signal recognition part 93.2 1.5 5.1E-05 36.3 12.0 22 63-84 97-118 (295)
184 2qgz_A Helicase loader, putati 93.2 0.09 3.1E-06 44.1 4.6 20 64-83 152-171 (308)
185 2oap_1 GSPE-2, type II secreti 93.1 0.18 6.2E-06 45.4 6.8 47 39-88 236-283 (511)
186 3m6a_A ATP-dependent protease 92.9 0.2 6.7E-06 45.7 6.7 19 63-81 107-125 (543)
187 1p9r_A General secretion pathw 92.9 0.15 5.1E-06 44.7 5.7 36 53-89 154-191 (418)
188 3cf2_A TER ATPase, transitiona 92.9 0.24 8.3E-06 47.0 7.4 17 64-80 238-254 (806)
189 3u4q_B ATP-dependent helicase/ 92.6 0.22 7.4E-06 50.0 7.1 41 68-113 5-45 (1166)
190 1r6b_X CLPA protein; AAA+, N-t 92.6 0.82 2.8E-05 43.5 10.9 18 64-81 207-224 (758)
191 2eyq_A TRCF, transcription-rep 92.3 0.49 1.7E-05 47.3 9.1 71 274-344 649-724 (1151)
192 3e70_C DPA, signal recognition 92.1 2.9 0.0001 35.1 12.5 53 174-226 211-264 (328)
193 1oyw_A RECQ helicase, ATP-depe 91.9 0.38 1.3E-05 43.6 7.3 59 277-335 65-123 (523)
194 3b85_A Phosphate starvation-in 91.8 0.19 6.4E-06 39.4 4.6 34 47-80 5-38 (208)
195 2v1x_A ATP-dependent DNA helic 91.7 0.55 1.9E-05 43.2 8.2 59 277-335 84-144 (591)
196 1ofh_A ATP-dependent HSL prote 91.5 0.71 2.4E-05 38.3 8.2 18 64-81 50-67 (310)
197 3hgt_A HDA1 complex subunit 3; 91.4 0.59 2E-05 39.1 7.2 73 265-344 115-187 (328)
198 1ypw_A Transitional endoplasmi 91.3 0.36 1.2E-05 46.3 6.7 18 63-80 237-254 (806)
199 1e9r_A Conjugal transfer prote 91.1 0.26 8.9E-06 43.5 5.3 44 63-114 52-95 (437)
200 2zts_A Putative uncharacterize 91.1 0.15 5.1E-06 41.0 3.4 52 63-122 29-80 (251)
201 1t6n_A Probable ATP-dependent 90.9 0.58 2E-05 36.7 6.7 56 277-335 82-142 (220)
202 3bh0_A DNAB-like replicative h 90.8 0.28 9.4E-06 41.2 4.8 52 61-121 65-116 (315)
203 2r8r_A Sensor protein; KDPD, P 90.7 0.26 9E-06 38.9 4.3 25 66-90 8-32 (228)
204 1xwi_A SKD1 protein; VPS4B, AA 90.5 0.09 3.1E-06 44.4 1.7 53 25-81 7-62 (322)
205 1qhx_A CPT, protein (chloramph 90.5 0.13 4.3E-06 39.0 2.3 18 64-81 3-20 (178)
206 2hjv_A ATP-dependent RNA helic 90.5 1.7 5.7E-05 32.2 8.6 74 100-183 35-112 (163)
207 2l8b_A Protein TRAI, DNA helic 90.3 0.46 1.6E-05 35.9 5.1 120 51-214 36-158 (189)
208 3vaa_A Shikimate kinase, SK; s 90.3 0.17 6E-06 39.1 3.0 21 62-82 23-43 (199)
209 1c9k_A COBU, adenosylcobinamid 90.2 0.41 1.4E-05 36.3 4.9 45 67-123 2-46 (180)
210 2x8a_A Nuclear valosin-contain 90.2 0.088 3E-06 43.3 1.2 54 24-80 4-60 (274)
211 2l82_A Designed protein OR32; 90.1 1 3.5E-05 30.2 6.0 46 280-325 5-50 (162)
212 3cmw_A Protein RECA, recombina 90.1 0.33 1.1E-05 49.9 5.5 89 65-188 1432-1523(1706)
213 4ag6_A VIRB4 ATPase, type IV s 90.0 0.34 1.2E-05 42.0 5.0 42 63-112 34-75 (392)
214 2eyu_A Twitching motility prot 89.9 0.16 5.6E-06 41.3 2.6 20 61-80 22-41 (261)
215 3iij_A Coilin-interacting nucl 89.9 0.2 6.9E-06 38.0 3.0 21 62-82 9-29 (180)
216 2pt7_A CAG-ALFA; ATPase, prote 89.8 0.27 9.3E-06 41.5 4.1 19 61-79 168-186 (330)
217 3ber_A Probable ATP-dependent 89.8 1.6 5.5E-05 35.0 8.6 61 271-335 105-169 (249)
218 1w36_B RECB, exodeoxyribonucle 89.8 0.7 2.4E-05 46.4 7.5 58 66-123 18-79 (1180)
219 3hws_A ATP-dependent CLP prote 89.7 0.55 1.9E-05 40.2 6.0 20 63-82 50-69 (363)
220 2rb4_A ATP-dependent RNA helic 89.6 2.5 8.4E-05 31.7 9.0 72 100-181 34-109 (175)
221 2j37_W Signal recognition part 89.5 3.2 0.00011 37.2 10.9 35 66-108 103-137 (504)
222 1kgd_A CASK, peripheral plasma 89.4 0.23 7.8E-06 37.8 3.0 18 63-80 4-21 (180)
223 3a8t_A Adenylate isopentenyltr 89.4 0.18 6.2E-06 42.5 2.5 18 65-82 41-58 (339)
224 2ffh_A Protein (FFH); SRP54, s 89.2 4.3 0.00015 35.5 11.2 20 64-83 98-117 (425)
225 1tue_A Replication protein E1; 89.2 0.17 5.8E-06 39.3 2.1 16 66-81 60-75 (212)
226 1ixz_A ATP-dependent metallopr 89.2 0.2 6.7E-06 40.6 2.6 54 24-80 10-65 (254)
227 2qmh_A HPR kinase/phosphorylas 89.1 0.2 7E-06 38.6 2.5 19 64-82 34-52 (205)
228 1kag_A SKI, shikimate kinase I 89.1 0.27 9.3E-06 36.9 3.3 17 64-80 4-20 (173)
229 3exa_A TRNA delta(2)-isopenten 89.1 0.2 6.7E-06 41.8 2.5 19 64-82 3-21 (322)
230 2r44_A Uncharacterized protein 89.1 0.22 7.5E-06 42.1 2.9 23 59-81 41-63 (331)
231 2bjv_A PSP operon transcriptio 89.0 0.3 1E-05 39.8 3.6 18 63-80 28-45 (265)
232 3trf_A Shikimate kinase, SK; a 89.0 0.25 8.4E-06 37.6 3.0 19 64-82 5-23 (185)
233 1lvg_A Guanylate kinase, GMP k 89.0 0.25 8.6E-06 38.3 3.0 18 63-80 3-20 (198)
234 1fuk_A Eukaryotic initiation f 89.0 2.2 7.6E-05 31.6 8.3 74 100-183 30-107 (165)
235 3uk6_A RUVB-like 2; hexameric 89.0 0.52 1.8E-05 40.3 5.3 19 64-82 70-88 (368)
236 2gza_A Type IV secretion syste 88.9 0.25 8.7E-06 42.3 3.2 20 60-79 171-190 (361)
237 3nbx_X ATPase RAVA; AAA+ ATPas 88.9 0.21 7.3E-06 44.8 2.8 26 55-80 32-57 (500)
238 2cvh_A DNA repair and recombin 88.8 0.49 1.7E-05 37.0 4.7 36 62-108 18-53 (220)
239 2qor_A Guanylate kinase; phosp 88.7 0.27 9.4E-06 38.2 3.1 20 61-80 9-28 (204)
240 2p6n_A ATP-dependent RNA helic 88.7 2.2 7.5E-05 32.6 8.2 73 100-182 54-130 (191)
241 3bgw_A DNAB-like replicative h 88.7 0.43 1.5E-05 42.2 4.6 40 61-108 194-233 (444)
242 1u94_A RECA protein, recombina 88.7 0.41 1.4E-05 40.9 4.3 39 63-109 62-100 (356)
243 2oxc_A Probable ATP-dependent 88.6 1.1 3.6E-05 35.5 6.6 55 276-335 91-150 (230)
244 1t5i_A C_terminal domain of A 88.6 5.2 0.00018 29.8 10.1 74 100-183 31-108 (172)
245 1u0j_A DNA replication protein 88.6 0.39 1.3E-05 39.0 3.9 44 36-82 73-122 (267)
246 3eaq_A Heat resistant RNA depe 88.5 2.2 7.5E-05 33.2 8.2 71 100-180 31-105 (212)
247 3t15_A Ribulose bisphosphate c 88.5 0.31 1E-05 40.5 3.4 18 65-82 37-54 (293)
248 3tau_A Guanylate kinase, GMP k 88.5 0.28 9.7E-06 38.3 3.0 18 63-80 7-24 (208)
249 2px0_A Flagellar biosynthesis 88.3 0.49 1.7E-05 39.3 4.5 22 64-85 105-126 (296)
250 3lw7_A Adenylate kinase relate 88.3 0.21 7.2E-06 37.5 2.1 16 66-81 3-18 (179)
251 3b9p_A CG5977-PA, isoform A; A 88.3 0.54 1.9E-05 38.9 4.8 54 25-81 16-71 (297)
252 1kht_A Adenylate kinase; phosp 88.2 0.29 1E-05 37.3 2.9 17 64-80 3-19 (192)
253 3tr0_A Guanylate kinase, GMP k 88.2 0.3 1E-05 37.8 3.0 19 62-80 5-23 (205)
254 2zr9_A Protein RECA, recombina 88.2 0.42 1.4E-05 40.7 4.1 39 63-109 60-98 (349)
255 3cm0_A Adenylate kinase; ATP-b 88.1 0.21 7.1E-06 38.1 2.0 20 63-82 3-22 (186)
256 2r62_A Cell division protease 88.1 0.14 4.8E-06 41.8 1.1 19 64-82 44-62 (268)
257 2j41_A Guanylate kinase; GMP, 88.1 0.31 1E-05 37.8 3.0 19 62-80 4-22 (207)
258 3nwn_A Kinesin-like protein KI 88.0 0.3 1E-05 41.6 3.0 26 57-82 96-123 (359)
259 3gk5_A Uncharacterized rhodane 88.0 0.61 2.1E-05 31.9 4.1 46 267-312 45-90 (108)
260 1lv7_A FTSH; alpha/beta domain 88.0 0.55 1.9E-05 37.9 4.5 54 25-81 7-62 (257)
261 1y63_A LMAJ004144AAA protein; 87.9 0.33 1.1E-05 37.0 3.0 19 63-81 9-27 (184)
262 1zp6_A Hypothetical protein AT 87.9 0.23 7.8E-06 38.0 2.1 20 61-80 6-25 (191)
263 2c9o_A RUVB-like 1; hexameric 87.8 0.72 2.5E-05 40.9 5.5 19 64-82 63-81 (456)
264 3foz_A TRNA delta(2)-isopenten 87.7 0.31 1E-05 40.6 2.8 17 66-82 12-28 (316)
265 2r2a_A Uncharacterized protein 87.5 0.37 1.3E-05 37.3 3.0 22 66-87 7-28 (199)
266 2ze6_A Isopentenyl transferase 87.3 0.33 1.1E-05 39.3 2.8 17 66-82 3-19 (253)
267 3fe2_A Probable ATP-dependent 87.2 1.5 5E-05 35.0 6.6 56 276-335 101-160 (242)
268 2v54_A DTMP kinase, thymidylat 87.2 0.36 1.2E-05 37.4 2.9 19 63-81 3-21 (204)
269 3ney_A 55 kDa erythrocyte memb 87.1 0.4 1.4E-05 37.1 3.0 19 62-80 17-35 (197)
270 1bg2_A Kinesin; motor protein, 87.1 0.4 1.4E-05 40.3 3.3 27 56-82 68-96 (325)
271 2ewv_A Twitching motility prot 87.0 0.29 1E-05 42.2 2.4 28 61-89 133-160 (372)
272 1iy2_A ATP-dependent metallopr 87.0 0.32 1.1E-05 39.9 2.6 53 25-80 35-89 (278)
273 1xp8_A RECA protein, recombina 86.8 0.56 1.9E-05 40.2 4.1 39 64-110 74-112 (366)
274 3d8b_A Fidgetin-like protein 1 86.8 0.67 2.3E-05 39.6 4.6 19 64-82 117-135 (357)
275 2c95_A Adenylate kinase 1; tra 86.6 0.48 1.6E-05 36.3 3.3 22 61-82 6-27 (196)
276 1goj_A Kinesin, kinesin heavy 86.6 0.44 1.5E-05 40.6 3.3 26 57-82 72-99 (355)
277 3hr8_A Protein RECA; alpha and 86.5 0.46 1.6E-05 40.5 3.4 41 64-112 61-101 (356)
278 2vvg_A Kinesin-2; motor protei 86.5 0.45 1.6E-05 40.4 3.3 25 57-81 81-107 (350)
279 1f9v_A Kinesin-like protein KA 86.4 0.5 1.7E-05 40.1 3.5 26 57-82 76-103 (347)
280 3dc4_A Kinesin-like protein NO 86.4 0.44 1.5E-05 40.4 3.1 25 57-81 86-112 (344)
281 2h58_A Kinesin-like protein KI 86.3 0.48 1.6E-05 39.9 3.3 27 56-82 71-99 (330)
282 2zfi_A Kinesin-like protein KI 86.2 0.47 1.6E-05 40.6 3.3 26 57-82 81-108 (366)
283 3kb2_A SPBC2 prophage-derived 86.2 0.42 1.4E-05 35.7 2.7 16 66-81 3-18 (173)
284 3t0q_A AGR253WP; kinesin, alph 86.2 0.53 1.8E-05 40.0 3.5 26 57-82 77-104 (349)
285 2jgn_A DBX, DDX3, ATP-dependen 86.1 2.5 8.4E-05 32.1 7.1 71 100-180 46-120 (185)
286 3bfn_A Kinesin-like protein KI 86.1 0.47 1.6E-05 40.8 3.2 24 59-82 92-117 (388)
287 3b6u_A Kinesin-like protein KI 86.1 0.45 1.5E-05 40.8 3.0 27 56-82 92-120 (372)
288 1vma_A Cell division protein F 86.1 0.69 2.4E-05 38.5 4.1 19 65-83 105-123 (306)
289 3lre_A Kinesin-like protein KI 86.1 0.49 1.7E-05 40.3 3.3 25 57-81 97-123 (355)
290 1v8k_A Kinesin-like protein KI 86.0 0.46 1.6E-05 41.2 3.1 26 57-82 146-173 (410)
291 1ojl_A Transcriptional regulat 86.0 0.51 1.7E-05 39.4 3.4 19 63-81 24-42 (304)
292 1cr0_A DNA primase/helicase; R 86.0 0.76 2.6E-05 38.0 4.4 22 61-82 32-53 (296)
293 1xti_A Probable ATP-dependent 86.0 1.9 6.4E-05 37.0 7.1 57 276-335 75-136 (391)
294 1t5c_A CENP-E protein, centrom 85.9 0.46 1.6E-05 40.4 3.0 26 57-82 69-96 (349)
295 1ly1_A Polynucleotide kinase; 85.9 0.45 1.5E-05 35.9 2.8 16 66-81 4-19 (181)
296 2y65_A Kinesin, kinesin heavy 85.8 0.54 1.9E-05 40.2 3.4 25 57-81 76-102 (365)
297 2plr_A DTMP kinase, probable t 85.8 0.39 1.4E-05 37.3 2.5 19 63-81 3-21 (213)
298 4gp7_A Metallophosphoesterase; 85.8 0.28 9.6E-06 36.9 1.5 19 62-80 7-25 (171)
299 2ehv_A Hypothetical protein PH 85.7 0.75 2.6E-05 36.7 4.2 22 61-82 27-48 (251)
300 3crm_A TRNA delta(2)-isopenten 85.7 0.44 1.5E-05 39.9 2.8 17 66-82 7-23 (323)
301 3gbj_A KIF13B protein; kinesin 85.7 0.48 1.6E-05 40.4 3.0 25 57-81 84-110 (354)
302 1n0w_A DNA repair protein RAD5 85.7 0.82 2.8E-05 36.3 4.3 23 62-84 22-44 (243)
303 4a14_A Kinesin, kinesin-like p 85.6 0.57 1.9E-05 39.8 3.4 25 57-81 75-101 (344)
304 4etp_A Kinesin-like protein KA 85.6 0.55 1.9E-05 40.8 3.4 26 57-82 132-159 (403)
305 2nr8_A Kinesin-like protein KI 85.5 0.5 1.7E-05 40.3 3.0 25 57-81 95-121 (358)
306 1x88_A Kinesin-like protein KI 85.5 0.45 1.6E-05 40.6 2.8 27 56-82 79-107 (359)
307 1knq_A Gluconate kinase; ALFA/ 85.5 0.45 1.5E-05 35.8 2.5 19 63-81 7-25 (175)
308 1z6g_A Guanylate kinase; struc 85.4 0.59 2E-05 36.8 3.3 19 61-79 20-38 (218)
309 1zu4_A FTSY; GTPase, signal re 85.4 0.78 2.7E-05 38.5 4.2 20 65-84 106-125 (320)
310 1xjc_A MOBB protein homolog; s 85.3 0.97 3.3E-05 33.9 4.2 25 66-91 6-30 (169)
311 2wbe_C Bipolar kinesin KRP-130 85.3 0.5 1.7E-05 40.6 2.9 27 56-82 91-119 (373)
312 1zuh_A Shikimate kinase; alpha 85.3 0.52 1.8E-05 35.2 2.8 18 65-82 8-25 (168)
313 1um8_A ATP-dependent CLP prote 85.2 0.53 1.8E-05 40.6 3.2 19 64-82 72-90 (376)
314 2rhm_A Putative kinase; P-loop 85.2 0.4 1.4E-05 36.7 2.2 18 64-81 5-22 (193)
315 3nwj_A ATSK2; P loop, shikimat 85.1 0.66 2.2E-05 37.4 3.4 20 63-82 47-66 (250)
316 1ex7_A Guanylate kinase; subst 85.0 0.48 1.7E-05 36.2 2.5 16 65-80 2-17 (186)
317 4eun_A Thermoresistant glucoki 85.0 0.58 2E-05 36.1 3.0 18 63-80 28-45 (200)
318 2ius_A DNA translocase FTSK; n 84.9 1.5 5E-05 39.4 5.9 20 62-81 165-184 (512)
319 1tev_A UMP-CMP kinase; ploop, 84.9 0.46 1.6E-05 36.3 2.4 18 64-81 3-20 (196)
320 3g5j_A Putative ATP/GTP bindin 84.9 1.2 4.2E-05 31.5 4.6 45 268-312 79-125 (134)
321 2owm_A Nckin3-434, related to 84.8 0.6 2E-05 41.1 3.3 25 58-82 129-155 (443)
322 2heh_A KIF2C protein; kinesin, 84.8 0.59 2E-05 40.2 3.2 26 57-82 126-153 (387)
323 3d3q_A TRNA delta(2)-isopenten 84.7 0.52 1.8E-05 39.8 2.8 17 66-82 9-25 (340)
324 3b5x_A Lipid A export ATP-bind 84.7 1.9 6.6E-05 39.5 6.8 40 172-211 496-535 (582)
325 1vec_A ATP-dependent RNA helic 84.3 2.6 8.9E-05 32.4 6.6 56 276-335 70-130 (206)
326 3cob_A Kinesin heavy chain-lik 84.3 0.49 1.7E-05 40.5 2.5 25 57-81 71-97 (369)
327 3flh_A Uncharacterized protein 84.2 1 3.4E-05 31.7 3.7 45 267-311 61-107 (124)
328 1v5w_A DMC1, meiotic recombina 84.2 0.92 3.1E-05 38.5 4.1 58 64-123 122-180 (343)
329 3a00_A Guanylate kinase, GMP k 84.1 0.71 2.4E-05 35.2 3.1 16 65-80 2-17 (186)
330 1via_A Shikimate kinase; struc 84.1 0.68 2.3E-05 34.8 3.0 18 65-82 5-22 (175)
331 2pl3_A Probable ATP-dependent 84.1 1.7 5.7E-05 34.4 5.5 55 276-335 96-154 (236)
332 2rep_A Kinesin-like protein KI 84.1 0.66 2.3E-05 39.8 3.2 26 57-82 107-134 (376)
333 3u06_A Protein claret segregat 83.9 0.68 2.3E-05 40.3 3.2 26 56-81 129-156 (412)
334 4akg_A Glutathione S-transfera 83.9 1.8 6.2E-05 46.9 6.9 48 34-82 890-941 (2695)
335 2yvu_A Probable adenylyl-sulfa 83.7 1.1 3.8E-05 34.0 4.1 19 63-81 12-30 (186)
336 2z43_A DNA repair and recombin 83.5 1.3 4.4E-05 37.3 4.7 58 64-123 107-165 (324)
337 3tlx_A Adenylate kinase 2; str 83.4 0.69 2.4E-05 37.1 2.9 20 63-82 28-47 (243)
338 1gvn_B Zeta; postsegregational 83.4 0.49 1.7E-05 39.1 2.0 16 65-80 34-49 (287)
339 2qt1_A Nicotinamide riboside k 83.4 0.36 1.2E-05 37.5 1.2 22 59-80 16-37 (207)
340 3i5x_A ATP-dependent RNA helic 83.3 12 0.00041 33.9 11.6 77 100-183 339-419 (563)
341 3uie_A Adenylyl-sulfate kinase 83.3 0.62 2.1E-05 36.0 2.5 20 62-81 23-42 (200)
342 2bwj_A Adenylate kinase 5; pho 83.3 0.74 2.5E-05 35.3 3.0 20 62-81 10-29 (199)
343 1aky_A Adenylate kinase; ATP:A 83.3 0.74 2.5E-05 36.1 3.0 19 64-82 4-22 (220)
344 4fcw_A Chaperone protein CLPB; 83.3 0.59 2E-05 38.9 2.6 17 65-81 48-64 (311)
345 2wwf_A Thymidilate kinase, put 83.2 0.64 2.2E-05 36.1 2.6 20 62-81 8-27 (212)
346 1s96_A Guanylate kinase, GMP k 83.2 0.76 2.6E-05 36.2 3.0 20 61-80 13-32 (219)
347 3lnc_A Guanylate kinase, GMP k 83.2 0.44 1.5E-05 37.8 1.7 20 61-80 24-43 (231)
348 3t61_A Gluconokinase; PSI-biol 83.2 0.7 2.4E-05 35.7 2.8 17 65-81 19-35 (202)
349 2iyv_A Shikimate kinase, SK; t 83.1 0.84 2.9E-05 34.6 3.2 18 65-82 3-20 (184)
350 2i1q_A DNA repair and recombin 83.1 1.2 4.2E-05 37.3 4.5 23 64-86 98-120 (322)
351 3bor_A Human initiation factor 83.1 1.9 6.5E-05 34.2 5.4 56 276-334 97-156 (237)
352 3iuy_A Probable ATP-dependent 83.0 2 6.8E-05 33.8 5.5 56 276-335 93-151 (228)
353 2v3c_C SRP54, signal recogniti 82.9 0.9 3.1E-05 39.9 3.6 35 65-107 100-134 (432)
354 3fb4_A Adenylate kinase; psych 82.9 0.69 2.3E-05 36.1 2.7 17 66-82 2-18 (216)
355 1yks_A Genome polyprotein [con 82.8 4 0.00014 35.9 7.8 68 100-179 177-245 (440)
356 3eph_A TRNA isopentenyltransfe 82.8 0.62 2.1E-05 40.3 2.5 17 66-82 4-20 (409)
357 1m7g_A Adenylylsulfate kinase; 82.8 0.68 2.3E-05 36.1 2.6 28 52-80 14-41 (211)
358 1zd8_A GTP:AMP phosphotransfer 82.8 0.71 2.4E-05 36.5 2.7 19 63-81 6-24 (227)
359 1nn5_A Similar to deoxythymidy 82.7 0.74 2.5E-05 35.8 2.8 19 63-81 8-26 (215)
360 1e6c_A Shikimate kinase; phosp 82.7 0.85 2.9E-05 34.0 3.0 18 65-82 3-20 (173)
361 3dl0_A Adenylate kinase; phosp 82.6 0.71 2.4E-05 36.1 2.7 17 66-82 2-18 (216)
362 1in4_A RUVB, holliday junction 82.6 0.77 2.6E-05 38.8 3.0 16 65-80 52-67 (334)
363 1sky_E F1-ATPase, F1-ATP synth 82.5 10 0.00035 33.5 10.1 23 61-83 148-170 (473)
364 2iut_A DNA translocase FTSK; n 82.4 1.9 6.6E-05 39.1 5.6 27 63-89 213-239 (574)
365 1znw_A Guanylate kinase, GMP k 82.3 0.87 3E-05 35.4 3.1 21 60-80 16-36 (207)
366 1rj9_A FTSY, signal recognitio 82.3 1.5 5.1E-05 36.5 4.6 18 64-81 102-119 (304)
367 1htw_A HI0065; nucleotide-bind 82.2 0.8 2.7E-05 33.9 2.7 25 62-87 31-55 (158)
368 1zak_A Adenylate kinase; ATP:A 82.0 0.88 3E-05 35.8 3.0 19 64-82 5-23 (222)
369 3i32_A Heat resistant RNA depe 81.9 5.3 0.00018 33.1 7.8 74 100-183 28-105 (300)
370 1nks_A Adenylate kinase; therm 81.8 0.77 2.6E-05 35.0 2.5 15 66-80 3-17 (194)
371 2cdn_A Adenylate kinase; phosp 81.7 0.94 3.2E-05 34.9 3.0 18 64-81 20-37 (201)
372 2vli_A Antibiotic resistance p 81.7 0.72 2.5E-05 34.8 2.3 20 63-82 4-23 (183)
373 1g41_A Heat shock protein HSLU 81.6 3.7 0.00013 36.1 7.0 18 64-81 50-67 (444)
374 3bs4_A Uncharacterized protein 81.6 1.9 6.6E-05 34.8 4.8 53 64-125 21-73 (260)
375 1ry6_A Internal kinesin; kines 81.6 0.91 3.1E-05 38.7 3.0 20 63-82 82-103 (360)
376 3tqc_A Pantothenate kinase; bi 81.5 2.5 8.6E-05 35.4 5.7 15 66-80 94-108 (321)
377 3b9q_A Chloroplast SRP recepto 81.5 1.4 4.8E-05 36.6 4.1 19 64-82 100-118 (302)
378 2bdt_A BH3686; alpha-beta prot 81.4 0.89 3.1E-05 34.6 2.8 16 65-80 3-18 (189)
379 3umf_A Adenylate kinase; rossm 81.3 0.74 2.5E-05 36.2 2.3 21 62-82 27-47 (217)
380 1q57_A DNA primase/helicase; d 81.2 1 3.4E-05 40.6 3.4 52 61-120 239-290 (503)
381 1ak2_A Adenylate kinase isoenz 81.2 0.97 3.3E-05 35.9 3.0 20 63-82 15-34 (233)
382 3a4m_A L-seryl-tRNA(SEC) kinas 81.1 0.8 2.7E-05 37.1 2.5 18 64-81 4-21 (260)
383 3vkg_A Dynein heavy chain, cyt 81.1 3.7 0.00013 45.3 7.9 75 35-115 874-952 (3245)
384 2pez_A Bifunctional 3'-phospho 81.0 0.85 2.9E-05 34.4 2.5 18 63-80 4-21 (179)
385 3foj_A Uncharacterized protein 80.9 1 3.5E-05 30.2 2.7 37 275-311 54-90 (100)
386 2gxq_A Heat resistant RNA depe 80.9 3.6 0.00012 31.5 6.2 56 276-335 71-128 (207)
387 1cke_A CK, MSSA, protein (cyti 80.9 0.99 3.4E-05 35.5 2.9 18 65-82 6-23 (227)
388 3sqw_A ATP-dependent RNA helic 80.8 18 0.00063 32.9 11.8 78 100-184 288-369 (579)
389 1qf9_A UMP/CMP kinase, protein 80.8 0.88 3E-05 34.6 2.6 18 65-82 7-24 (194)
390 1qde_A EIF4A, translation init 80.8 2.1 7.1E-05 33.5 4.8 56 275-335 80-139 (224)
391 3eme_A Rhodanese-like domain p 80.6 1.1 3.9E-05 30.2 2.8 37 275-311 54-90 (103)
392 1g8p_A Magnesium-chelatase 38 80.6 0.66 2.3E-05 39.3 1.9 18 64-81 45-62 (350)
393 3c8u_A Fructokinase; YP_612366 80.4 0.88 3E-05 35.4 2.5 18 63-80 21-38 (208)
394 1gmx_A GLPE protein; transfera 80.4 2.9 9.8E-05 28.4 4.8 43 270-312 51-94 (108)
395 2v9p_A Replication protein E1; 80.1 1 3.6E-05 37.4 2.9 19 61-79 123-141 (305)
396 4f4c_A Multidrug resistance pr 80.0 3.2 0.00011 42.2 6.9 33 172-204 570-602 (1321)
397 3be4_A Adenylate kinase; malar 80.0 1 3.6E-05 35.2 2.8 18 64-81 5-22 (217)
398 4a74_A DNA repair and recombin 80.0 0.75 2.6E-05 36.2 2.0 20 62-81 23-42 (231)
399 2jaq_A Deoxyguanosine kinase; 79.9 1.1 3.6E-05 34.5 2.8 15 66-80 2-16 (205)
400 3pxg_A Negative regulator of g 79.9 1.3 4.6E-05 39.3 3.7 25 64-89 201-225 (468)
401 2i3b_A HCR-ntpase, human cance 79.8 1.3 4.4E-05 33.9 3.2 17 64-80 1-17 (189)
402 2pt5_A Shikimate kinase, SK; a 79.8 1.1 3.8E-05 33.2 2.8 16 66-81 2-17 (168)
403 1np6_A Molybdopterin-guanine d 79.7 2.1 7.1E-05 32.3 4.2 24 65-89 7-30 (174)
404 1j8m_F SRP54, signal recogniti 79.5 1.6 5.5E-05 36.2 3.8 22 64-85 98-119 (297)
405 2vhj_A Ntpase P4, P4; non- hyd 79.5 0.9 3.1E-05 38.0 2.3 23 62-84 121-143 (331)
406 1ye8_A Protein THEP1, hypothet 79.5 1.2 4E-05 33.8 2.8 15 66-80 2-16 (178)
407 1e4v_A Adenylate kinase; trans 79.4 0.98 3.4E-05 35.2 2.4 16 66-81 2-17 (214)
408 3f9v_A Minichromosome maintena 79.3 1.1 3.6E-05 41.3 2.9 14 66-79 329-342 (595)
409 2i4i_A ATP-dependent RNA helic 79.3 8.1 0.00028 33.3 8.6 71 100-180 276-350 (417)
410 1ukz_A Uridylate kinase; trans 79.3 1.1 3.9E-05 34.4 2.8 17 65-81 16-32 (203)
411 3iwh_A Rhodanese-like domain p 79.2 1.3 4.6E-05 29.9 2.8 38 274-311 53-90 (103)
412 1jjv_A Dephospho-COA kinase; P 79.1 1.2 4E-05 34.5 2.8 16 66-81 4-19 (206)
413 1gku_B Reverse gyrase, TOP-RG; 79.0 4.8 0.00016 39.9 7.6 58 276-335 98-163 (1054)
414 2ce7_A Cell division protein F 79.0 1.8 6E-05 38.6 4.2 52 25-81 11-66 (476)
415 3sr0_A Adenylate kinase; phosp 78.9 1.2 4.2E-05 34.6 2.8 17 66-82 2-18 (206)
416 2pbr_A DTMP kinase, thymidylat 78.8 1.2 4.2E-05 33.8 2.8 16 66-81 2-17 (195)
417 3tif_A Uncharacterized ABC tra 78.5 0.96 3.3E-05 36.0 2.1 19 61-79 28-46 (235)
418 2og2_A Putative signal recogni 78.5 1.9 6.6E-05 36.7 4.1 19 64-82 157-175 (359)
419 3ipz_A Monothiol glutaredoxin- 78.4 11 0.00039 25.4 7.4 68 268-335 8-81 (109)
420 2z0h_A DTMP kinase, thymidylat 78.4 1.3 4.4E-05 33.9 2.8 15 67-81 3-17 (197)
421 1q0u_A Bstdead; DEAD protein, 78.3 1.5 5E-05 34.3 3.2 56 276-335 71-134 (219)
422 2jtq_A Phage shock protein E; 78.2 6 0.00021 25.3 5.7 36 275-311 39-75 (85)
423 3asz_A Uridine kinase; cytidin 78.0 1.1 3.7E-05 34.8 2.3 18 63-80 5-22 (211)
424 2fsf_A Preprotein translocase 78.0 8.3 0.00029 36.7 8.4 55 275-335 113-171 (853)
425 2if2_A Dephospho-COA kinase; a 77.7 1.2 4.3E-05 34.2 2.6 15 66-80 3-17 (204)
426 3k1j_A LON protease, ATP-depen 77.7 1.9 6.4E-05 39.9 4.1 21 60-80 56-76 (604)
427 1ypw_A Transitional endoplasmi 77.6 0.9 3.1E-05 43.5 2.0 18 63-80 510-527 (806)
428 2xb4_A Adenylate kinase; ATP-b 77.4 1.4 4.7E-05 34.7 2.8 16 66-81 2-17 (223)
429 4e22_A Cytidylate kinase; P-lo 77.3 1.5 5.1E-05 35.3 3.0 19 63-81 26-44 (252)
430 1vht_A Dephospho-COA kinase; s 77.3 1.3 4.3E-05 34.7 2.5 17 65-81 5-21 (218)
431 3fht_A ATP-dependent RNA helic 77.2 9.9 0.00034 32.6 8.5 72 100-181 266-341 (412)
432 3cmu_A Protein RECA, recombina 77.1 2 6.7E-05 45.2 4.3 40 62-109 1079-1118(2050)
433 2cbz_A Multidrug resistance-as 77.0 1.1 3.8E-05 35.7 2.1 19 61-79 28-46 (237)
434 4edh_A DTMP kinase, thymidylat 76.7 2.6 9E-05 32.9 4.2 28 62-90 4-31 (213)
435 1wp9_A ATP-dependent RNA helic 76.7 6.1 0.00021 34.7 7.2 55 276-335 51-109 (494)
436 2p5t_B PEZT; postsegregational 76.6 0.92 3.2E-05 36.6 1.5 18 64-81 32-49 (253)
437 3ice_A Transcription terminati 76.5 3.3 0.00011 35.7 4.9 21 61-81 171-191 (422)
438 2grj_A Dephospho-COA kinase; T 76.5 1.6 5.5E-05 33.5 2.8 17 66-82 14-30 (192)
439 1sgw_A Putative ABC transporte 76.4 1.3 4.4E-05 34.7 2.3 19 61-79 32-50 (214)
440 3fkq_A NTRC-like two-domain pr 76.4 7 0.00024 33.4 7.1 34 66-107 145-179 (373)
441 3pey_A ATP-dependent RNA helic 76.3 11 0.00039 31.9 8.6 75 100-184 243-321 (395)
442 2d7d_A Uvrabc system protein B 76.3 16 0.00054 34.1 9.9 77 100-186 445-525 (661)
443 2bbw_A Adenylate kinase 4, AK4 76.1 1.7 5.7E-05 34.8 2.9 17 64-80 27-43 (246)
444 1fuu_A Yeast initiation factor 76.1 6.9 0.00024 33.4 7.1 55 276-335 88-146 (394)
445 3tqf_A HPR(Ser) kinase; transf 76.0 1.4 4.6E-05 33.2 2.1 20 63-82 15-34 (181)
446 1uf9_A TT1252 protein; P-loop, 76.0 1.5 5E-05 33.7 2.5 17 65-81 9-25 (203)
447 1nij_A Hypothetical protein YJ 75.9 2.2 7.4E-05 35.7 3.7 38 174-214 151-188 (318)
448 3cmw_A Protein RECA, recombina 75.9 2.2 7.7E-05 44.1 4.3 42 62-111 32-73 (1706)
449 1tf5_A Preprotein translocase 75.9 12 0.00042 35.6 8.9 55 275-335 122-180 (844)
450 3ly5_A ATP-dependent RNA helic 75.7 8.1 0.00028 31.1 7.0 56 276-335 125-184 (262)
451 1f2t_A RAD50 ABC-ATPase; DNA d 75.5 1.9 6.6E-05 31.4 2.9 15 66-80 25-39 (149)
452 1wv9_A Rhodanese homolog TT165 75.2 2.1 7E-05 28.2 2.8 35 278-312 54-88 (94)
453 1wrb_A DJVLGB; RNA helicase, D 75.1 7.2 0.00025 31.1 6.6 55 277-335 100-158 (253)
454 2yhs_A FTSY, cell division pro 75.1 2.5 8.6E-05 37.7 4.0 18 64-81 293-310 (503)
455 3v9p_A DTMP kinase, thymidylat 75.0 1.9 6.3E-05 34.2 2.9 28 61-89 22-49 (227)
456 2pze_A Cystic fibrosis transme 74.9 1.3 4.6E-05 35.0 2.0 19 61-79 31-49 (229)
457 2ff7_A Alpha-hemolysin translo 74.9 1.3 4.6E-05 35.5 2.1 19 61-79 32-50 (247)
458 3gfo_A Cobalt import ATP-bindi 74.8 1.3 4.4E-05 36.2 2.0 19 61-79 31-49 (275)
459 2ghi_A Transport protein; mult 74.7 1.4 4.8E-05 35.7 2.1 19 61-79 43-61 (260)
460 4tmk_A Protein (thymidylate ki 74.6 2.3 7.9E-05 33.2 3.3 28 63-91 2-29 (213)
461 3hix_A ALR3790 protein; rhodan 74.6 2.8 9.6E-05 28.3 3.4 39 273-311 48-87 (106)
462 1gtv_A TMK, thymidylate kinase 74.4 0.94 3.2E-05 35.2 1.0 14 67-80 3-16 (214)
463 3lda_A DNA repair protein RAD5 74.3 2.9 9.9E-05 36.3 4.1 26 23-48 80-105 (400)
464 2jlq_A Serine protease subunit 74.3 9.5 0.00032 33.6 7.6 68 100-179 188-256 (451)
465 3qf7_A RAD50; ABC-ATPase, ATPa 74.2 2 6.7E-05 36.8 3.0 16 66-81 25-40 (365)
466 2xxa_A Signal recognition part 74.1 3.4 0.00011 36.3 4.5 22 65-86 101-122 (433)
467 1c4o_A DNA nucleotide excision 74.1 21 0.00072 33.3 10.1 76 100-185 439-518 (664)
468 2pcj_A ABC transporter, lipopr 73.9 1.3 4.6E-05 34.9 1.8 19 61-79 27-45 (224)
469 4g1u_C Hemin import ATP-bindin 73.6 1.5 5.1E-05 35.7 2.0 19 61-79 34-52 (266)
470 3tbk_A RIG-I helicase domain; 73.6 4.6 0.00016 36.4 5.6 55 277-335 52-110 (555)
471 2j0s_A ATP-dependent RNA helic 73.5 13 0.00044 31.9 8.3 73 100-182 276-352 (410)
472 1tf7_A KAIC; homohexamer, hexa 73.2 3.1 0.0001 37.6 4.2 52 61-121 278-329 (525)
473 1svm_A Large T antigen; AAA+ f 73.2 2.1 7.2E-05 36.8 3.0 19 62-80 167-185 (377)
474 3eiq_A Eukaryotic initiation f 73.2 8.8 0.0003 33.0 7.1 57 276-335 107-167 (414)
475 2wv9_A Flavivirin protease NS2 73.2 9.6 0.00033 35.6 7.6 68 100-179 410-478 (673)
476 1ji0_A ABC transporter; ATP bi 73.1 1.6 5.4E-05 34.9 2.1 19 61-79 29-47 (240)
477 1g6h_A High-affinity branched- 73.1 1.6 5.4E-05 35.3 2.1 19 61-79 30-48 (257)
478 3pxi_A Negative regulator of g 73.1 2.5 8.5E-05 40.2 3.7 18 64-81 201-218 (758)
479 1mv5_A LMRA, multidrug resista 73.1 1.3 4.5E-05 35.4 1.6 19 61-79 25-43 (243)
480 4eaq_A DTMP kinase, thymidylat 73.0 1.8 6.1E-05 34.3 2.3 18 63-80 25-42 (229)
481 4akg_A Glutathione S-transfera 72.9 2 7E-05 46.6 3.3 21 61-81 1264-1284(2695)
482 3nh6_A ATP-binding cassette SU 72.9 1.3 4.5E-05 36.8 1.6 19 61-79 77-95 (306)
483 1b0u_A Histidine permease; ABC 72.7 1.6 5.6E-05 35.3 2.1 19 61-79 29-47 (262)
484 1ltq_A Polynucleotide kinase; 72.7 1.6 5.5E-05 36.1 2.1 16 66-81 4-19 (301)
485 3pxi_A Negative regulator of g 72.7 3 0.0001 39.7 4.2 17 66-82 523-539 (758)
486 1qxn_A SUD, sulfide dehydrogen 72.6 4.1 0.00014 29.1 4.0 39 274-312 79-118 (137)
487 4a2p_A RIG-I, retinoic acid in 72.6 5.9 0.0002 35.8 6.0 55 277-335 55-113 (556)
488 1uj2_A Uridine-cytidine kinase 72.6 2.2 7.4E-05 34.3 2.8 17 66-82 24-40 (252)
489 3kta_A Chromosome segregation 72.5 2.2 7.4E-05 32.1 2.7 15 66-80 28-42 (182)
490 2z83_A Helicase/nucleoside tri 72.4 11 0.00038 33.3 7.6 68 100-179 190-258 (459)
491 1vpl_A ABC transporter, ATP-bi 72.3 1.7 5.9E-05 35.1 2.1 19 61-79 38-56 (256)
492 2ixe_A Antigen peptide transpo 72.2 1.7 5.9E-05 35.4 2.1 19 61-79 42-60 (271)
493 1s2m_A Putative ATP-dependent 72.2 14 0.00048 31.6 8.1 72 100-181 258-333 (400)
494 2qi9_C Vitamin B12 import ATP- 72.1 1.7 5.8E-05 34.9 2.0 19 61-79 23-41 (249)
495 3zq6_A Putative arsenical pump 72.1 3.7 0.00013 34.4 4.2 34 66-107 16-49 (324)
496 3zyw_A Glutaredoxin-3; metal b 72.0 18 0.00062 24.5 7.1 66 269-334 7-78 (111)
497 1tq1_A AT5G66040, senescence-a 72.0 2.8 9.7E-05 29.5 3.0 39 274-312 79-118 (129)
498 2yz2_A Putative ABC transporte 72.0 1.8 6.1E-05 35.2 2.1 19 61-79 30-48 (266)
499 2jeo_A Uridine-cytidine kinase 71.9 2 6.9E-05 34.3 2.4 19 63-81 24-42 (245)
500 1rz3_A Hypothetical protein rb 71.8 2.2 7.4E-05 32.9 2.5 17 64-80 22-38 (201)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.3e-52 Score=372.24 Aligned_cols=326 Identities=40% Similarity=0.660 Sum_probs=283.2
Q ss_pred ceeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCC
Q 019041 14 EITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQP 93 (347)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~ 93 (347)
..++.+.+.|.|+..|+++++++.+.++++.+||..|+++|.++++.+++++++++++|||+|||++|+++++..+...+
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCC
Q 019041 94 RLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLR 173 (347)
Q Consensus 94 ~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 173 (347)
......++++||++|+++|+.|+.+.+.+++...++++..++|+.........+..+++|+|+||+++.+.+......+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 33333467899999999999999999999988888999999999887777777778899999999999999988888889
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhc--CCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEE
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQI--RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVE 251 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (347)
+++++|+||||++.+.+|...+..++... .+.+|++++|||++..+..+...++.++..+....... ........+.
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~i~~~~~ 281 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG-ACSDVKQTIY 281 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC-CCTTEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc-cccccceEEE
Confidence 99999999999999999999999998875 56789999999999999999999998887776654332 2223333344
Q ss_pred EecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEE
Q 019041 252 VVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIM 331 (347)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 331 (347)
......+. ..+.+++... ..++||||+++++++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+||
T Consensus 282 ~~~~~~k~-----~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vL 354 (434)
T 2db3_A 282 EVNKYAKR-----SKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVL 354 (434)
T ss_dssp ECCGGGHH-----HHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEE
T ss_pred EeCcHHHH-----HHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 44433333 2566666664 3459999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCcCC
Q 019041 332 TATDVAARGLGRITVC 347 (347)
Q Consensus 332 v~T~~~~~Gidip~v~ 347 (347)
|||+++++|+|+|+|+
T Consensus 355 vaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 355 IATSVASRGLDIKNIK 370 (434)
T ss_dssp EECGGGTSSCCCTTCC
T ss_pred EEchhhhCCCCcccCC
Confidence 9999999999999975
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=356.10 Aligned_cols=327 Identities=45% Similarity=0.702 Sum_probs=275.5
Q ss_pred eeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCC
Q 019041 15 ITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPR 94 (347)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~ 94 (347)
+.+.+.+.|.++..|+++++++.+.++|..+||..|+++|.++++.+++++++++++|||+|||++|+++++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999888754321
Q ss_pred c-------------cCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH
Q 019041 95 L-------------VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL 161 (347)
Q Consensus 95 ~-------------~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l 161 (347)
. ....++++||++|+++|+.|+.+.+.++....++++..++|+.........+..+++|+|+||+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 0 011246799999999999999999999988888999999999887777777777899999999999
Q ss_pred HHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc--CC--CccEEEEEeecchhHHHHHHHhcCCCeEEEecc
Q 019041 162 IDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGS 237 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~--~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~ 237 (347)
...+......+.+++++|+||||++.+.+|...+..++... .+ ..+++++|||+++....+...++..+..+....
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99998887778899999999999999999999999988753 22 578999999999988888888888887665543
Q ss_pred cccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHH
Q 019041 238 LELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERD 317 (347)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~ 317 (347)
... ........+.......+ ...+.+++.....++++||||+++++++.+++.|.+.|+.+..+||++++++|.
T Consensus 243 ~~~-~~~~i~~~~~~~~~~~~-----~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 316 (417)
T 2i4i_A 243 VGS-TSENITQKVVWVEESDK-----RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 316 (417)
T ss_dssp ----CCSSEEEEEEECCGGGH-----HHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred CCC-CccCceEEEEEeccHhH-----HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHH
Confidence 321 22223333333333332 235667777766778999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 318 WVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 318 ~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
.+++.|++|+.+|||||+++++|+|+|+++
T Consensus 317 ~~~~~f~~g~~~vlvaT~~~~~Gidip~v~ 346 (417)
T 2i4i_A 317 EALHQFRSGKSPILVATAVAARGLDISNVK 346 (417)
T ss_dssp HHHHHHHHTSSCEEEECHHHHTTSCCCCEE
T ss_pred HHHHHHHcCCCCEEEECChhhcCCCcccCC
Confidence 999999999999999999999999999863
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.8e-49 Score=352.19 Aligned_cols=319 Identities=34% Similarity=0.524 Sum_probs=269.5
Q ss_pred ccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccC
Q 019041 18 EGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQ 97 (347)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~ 97 (347)
.....+.+...|+++++++.+.++++.+|+..|+++|.++++.+++++++++++|||+|||++++++++..+....
T Consensus 28 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~---- 103 (410)
T 2j0s_A 28 ETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV---- 103 (410)
T ss_dssp CCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS----
T ss_pred CCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc----
Confidence 3445556677899999999999999999999999999999999999999999999999999999999988765332
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccE
Q 019041 98 GEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTY 177 (347)
Q Consensus 98 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (347)
.+.++||++|+++|+.|+.+.+.+++...++.+..+.|+.........+..+++|+|+||+.+...+......+.++++
T Consensus 104 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~ 182 (410)
T 2j0s_A 104 -RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKM 182 (410)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred -CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeE
Confidence 2678999999999999999999999888899999999988777666666667899999999999999888778889999
Q ss_pred EEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchh
Q 019041 178 LVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (347)
Q Consensus 178 iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (347)
+|+||||++.+.++...+..++..+++..+++++|||++.........++..|..+........ .......+.......
T Consensus 183 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (410)
T 2j0s_A 183 LVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT-LEGIKQFFVAVEREE 261 (410)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCS-CTTEEEEEEEESSTT
T ss_pred EEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcccc-CCCceEEEEEeCcHH
Confidence 9999999999999999999999998889999999999998887777788888776655433322 222223332222221
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019041 258 KYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 337 (347)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 337 (347)
.....+.+++... ..+++||||+++++++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 262 ----~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 336 (410)
T 2j0s_A 262 ----WKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 336 (410)
T ss_dssp ----HHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGG
T ss_pred ----hHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 1223455555544 45699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCC
Q 019041 338 ARGLGRITVC 347 (347)
Q Consensus 338 ~~Gidip~v~ 347 (347)
++|+|+|+++
T Consensus 337 ~~Gidi~~v~ 346 (410)
T 2j0s_A 337 ARGLDVPQVS 346 (410)
T ss_dssp SSSCCCTTEE
T ss_pred hCcCCcccCC
Confidence 9999999863
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.2e-47 Score=338.83 Aligned_cols=310 Identities=25% Similarity=0.442 Sum_probs=259.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEE
Q 019041 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil 106 (347)
..|+++++++.+.+.|..+|+..|+++|.++++.+++++++++.+|||+|||++++++++..+.... .+.++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~-----~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT-----GQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT-----TCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC-----CCeeEEEE
Confidence 4699999999999999999999999999999999999999999999999999999999988765432 25689999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecch
Q 019041 107 APTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (347)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (347)
+|+++|+.||.+.+.++.... ++++..+.|+.........+. ..++|+|+||+++...+......+.+++++|+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999987665 788888888876554444333 347999999999999988877778899999999999
Q ss_pred hhhcc-CChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHH
Q 019041 185 RMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMF 263 (347)
Q Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (347)
++.++ ++...+..++...++..+++++|||++.........++..+..+................+.......+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 238 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN---- 238 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHH----
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHH----
Confidence 98774 5777788888888788999999999999999999999988887766554333333333333333333322
Q ss_pred HHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCC
Q 019041 264 ICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGR 343 (347)
Q Consensus 264 ~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 343 (347)
..+.+++... .++++||||+++++++.+++.|.+.|+.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+
T Consensus 239 -~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi 316 (391)
T 1xti_A 239 -RKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI 316 (391)
T ss_dssp -HHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCC
T ss_pred -HHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCc
Confidence 2455555544 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCC
Q 019041 344 ITVC 347 (347)
Q Consensus 344 p~v~ 347 (347)
|+++
T Consensus 317 ~~~~ 320 (391)
T 1xti_A 317 ERVN 320 (391)
T ss_dssp TTEE
T ss_pred ccCC
Confidence 9863
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=8.6e-48 Score=343.99 Aligned_cols=318 Identities=31% Similarity=0.518 Sum_probs=261.2
Q ss_pred cCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCC
Q 019041 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (347)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~ 98 (347)
..+++.....|+.+++++.+.+.++.+|+..|+++|.++++.+++++++++.+|||+|||++++++++..+....
T Consensus 32 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----- 106 (414)
T 3eiq_A 32 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL----- 106 (414)
T ss_dssp CCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS-----
T ss_pred CCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC-----
Confidence 345667778899999999999999999999999999999999999999999999999999999999998876532
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccE
Q 019041 99 EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTY 177 (347)
Q Consensus 99 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (347)
.+.+++|++|+++|+.|+.+.+.+++...+..+....++.........+. .+++|+|+||+++.+.+......+.++++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 186 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCE
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcE
Confidence 26689999999999999999999998888888888888877665555544 56899999999999999888777888999
Q ss_pred EEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchh
Q 019041 178 LVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (347)
Q Consensus 178 iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (347)
+|+||||++.+.++...+..++..+.+..+++++|||++.........++.++..+......... ......+.......
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 265 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL-EGIRQFYINVEREE 265 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCT-TSCCEEEEECSSST
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCC-CCceEEEEEeChHH
Confidence 99999999999899999999999998999999999999998888888888888776554443222 22222222222221
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 019041 258 KYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 337 (347)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 337 (347)
.....+..++... .++++||||+++++++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 266 ----~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 266 ----WKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 340 (414)
T ss_dssp ----THHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred ----hHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 1222455555443 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCC
Q 019041 338 ARGLGRITVC 347 (347)
Q Consensus 338 ~~Gidip~v~ 347 (347)
++|+|+|+++
T Consensus 341 ~~Gidip~v~ 350 (414)
T 3eiq_A 341 ARGIDVQQVS 350 (414)
T ss_dssp C--CCGGGCS
T ss_pred ccCCCccCCC
Confidence 9999999874
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.1e-47 Score=338.81 Aligned_cols=312 Identities=28% Similarity=0.491 Sum_probs=260.7
Q ss_pred CCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCE
Q 019041 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (347)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (347)
..+...|+++++++.+.++|..+||..|+++|.++++.+++++++++.+|||+|||++++++++..+.... .+.+
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL-----NKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc-----CCcc
Confidence 34566799999999999999999999999999999999999999999999999999999999988765432 2568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEec
Q 019041 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (347)
Q Consensus 103 ~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (347)
++|++|+++|+.|+.+.+.++....++.+..+.|+............+++|+|+||+++...+......+.+++++|+||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999988888899999888876666666667889999999999998887777788999999999
Q ss_pred chhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccH
Q 019041 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSM 262 (347)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (347)
||++.+.++...+..++..+++..+++++|||++..........+..+..+..... .........+.......+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k---- 245 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQK---- 245 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGH----
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhH----
Confidence 99988877888888888888888999999999999888888888887765543322 112222333333333222
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCC
Q 019041 263 FICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLG 342 (347)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 342 (347)
...+..++.. ..++++||||+++++++.+++.|.+.|+.+..+||+++..+|..+++.|++|+.+|||||+++++|+|
T Consensus 246 -~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 323 (400)
T 1s2m_A 246 -LHCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGID 323 (400)
T ss_dssp -HHHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCC
T ss_pred -HHHHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCC
Confidence 2244444444 35679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCC
Q 019041 343 RITVC 347 (347)
Q Consensus 343 ip~v~ 347 (347)
+|+++
T Consensus 324 ip~~~ 328 (400)
T 1s2m_A 324 IQAVN 328 (400)
T ss_dssp CTTEE
T ss_pred ccCCC
Confidence 99863
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.2e-47 Score=335.96 Aligned_cols=308 Identities=28% Similarity=0.456 Sum_probs=254.9
Q ss_pred CccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCE
Q 019041 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (347)
...+|+++++++.+.+.+...|+..|+++|.++++.++.+ +++++++|||+|||++++++++..+.... .+.+
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-----ASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-----CSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC-----CCcc
Confidence 3467999999999999999999999999999999999998 89999999999999999999988875532 2668
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEec
Q 019041 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (347)
Q Consensus 103 ~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (347)
+||++|+++|+.|+.+.+.+++...++.+....++...... ..+++|+|+||+++...+......+.+++++|+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999988888888888777544332 22579999999999999888777888999999999
Q ss_pred chhhhc-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhcccc
Q 019041 183 ADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNS 261 (347)
Q Consensus 183 ~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (347)
||++.+ .++...+..+...+++..+++++|||++.........++..+..+......... ......+........
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 229 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNV-DAIKQLYMDCKNEAD--- 229 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSC-TTEEEEEEECSSHHH---
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccc-ccccEEEEEcCchHH---
Confidence 999887 567888888888888889999999999999889988888887766554433222 222222222212111
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCC
Q 019041 262 MFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGL 341 (347)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 341 (347)
....+..++. ...++++||||+++++++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 230 -~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 307 (395)
T 3pey_A 230 -KFDVLTELYG-LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGI 307 (395)
T ss_dssp -HHHHHHHHHT-TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSC
T ss_pred -HHHHHHHHHH-hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCC
Confidence 1113333333 34668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCC
Q 019041 342 GRITVC 347 (347)
Q Consensus 342 dip~v~ 347 (347)
|+|+++
T Consensus 308 dip~~~ 313 (395)
T 3pey_A 308 DIPTVS 313 (395)
T ss_dssp CCTTEE
T ss_pred CcccCC
Confidence 999863
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.1e-46 Score=334.83 Aligned_cols=315 Identities=24% Similarity=0.382 Sum_probs=257.2
Q ss_pred cCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCcc
Q 019041 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV 96 (347)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~ 96 (347)
++.++.+...|+++++++.+.+.+..+|+..|+++|.++++.++++ +++++++|||+|||++|+++++..+....
T Consensus 17 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--- 93 (412)
T 3fht_A 17 PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--- 93 (412)
T ss_dssp TTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS---
T ss_pred CCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC---
Confidence 3445566788999999999999999999999999999999999987 89999999999999999999988876543
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhc-CCCCCCc
Q 019041 97 QGEGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRR 174 (347)
Q Consensus 97 ~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~ 174 (347)
.++++||++|+++|+.|+.+.+.+++... ++.+....++....... ...++|+|+||+++...+.. ....+.+
T Consensus 94 --~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~ 168 (412)
T 3fht_A 94 --KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 168 (412)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGG
T ss_pred --CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhh
Confidence 25689999999999999999999987653 56777777766543332 33579999999999998855 4556788
Q ss_pred ccEEEEecchhhhc-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEe
Q 019041 175 VTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV 253 (347)
Q Consensus 175 ~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (347)
++++|+||||++.. ..+...+..+...+++..+++++|||++.....+...++..+..+........ .......+...
T Consensus 169 ~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 247 (412)
T 3fht_A 169 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEET-LDTIKQYYVLC 247 (412)
T ss_dssp CCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSS-CTTEEEEEEEC
T ss_pred CcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccccc-ccCceEEEEEc
Confidence 99999999999886 56888888888888888999999999999998999999888877665543322 22222222222
Q ss_pred cchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEE
Q 019041 254 TEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA 333 (347)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 333 (347)
.... .....+..++... .++++||||+++++++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+||||
T Consensus 248 ~~~~----~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 322 (412)
T 3fht_A 248 SSRD----EKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 322 (412)
T ss_dssp SSHH----HHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred CChH----HHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 2211 1222444555443 5679999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCCcCC
Q 019041 334 TDVAARGLGRITVC 347 (347)
Q Consensus 334 T~~~~~Gidip~v~ 347 (347)
|+++++|+|+|+++
T Consensus 323 T~~~~~Gidip~~~ 336 (412)
T 3fht_A 323 TNVCARGIDVEQVS 336 (412)
T ss_dssp CGGGTSSCCCTTEE
T ss_pred cCccccCCCccCCC
Confidence 99999999999873
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.1e-46 Score=327.28 Aligned_cols=303 Identities=36% Similarity=0.549 Sum_probs=256.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC-CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEE
Q 019041 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (347)
Q Consensus 26 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (347)
..+|+++++++.+.+.|+++|+..|+++|.++++.++++ +++++.+|||+|||++++.+++..+... .+.+++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 456999999999999999999999999999999999988 6999999999999999998888776543 267899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecch
Q 019041 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (347)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (347)
|++|+++|+.|+.+.+.++....++.+..+.++.........+. .++|+|+||+++...+......+.+++++|+||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999988877888888888876655444433 68999999999999988877778899999999999
Q ss_pred hhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHH
Q 019041 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFI 264 (347)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (347)
++.+.++...+..++....+..+++++|||+++........++..+........ ......+.......+ .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~ 227 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-----ANIEQSYVEVNENER-----F 227 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-----SSSEEEEEECCGGGH-----H
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-----CCceEEEEEeChHHH-----H
Confidence 999988999999999988889999999999999888888888776554433221 122222322322222 2
Q ss_pred HHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 265 CRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 265 ~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
..+...+. ..++++||||+++++++.+++.|++.|..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 228 ~~l~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~ 305 (367)
T 1hv8_A 228 EALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVN 305 (367)
T ss_dssp HHHHHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCS
T ss_pred HHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcc
Confidence 34555554 3567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 019041 345 TVC 347 (347)
Q Consensus 345 ~v~ 347 (347)
+++
T Consensus 306 ~~~ 308 (367)
T 1hv8_A 306 DLN 308 (367)
T ss_dssp CCS
T ss_pred cCC
Confidence 874
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.5e-47 Score=340.26 Aligned_cols=314 Identities=32% Similarity=0.512 Sum_probs=184.2
Q ss_pred CCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCC
Q 019041 22 VPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGP 101 (347)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 101 (347)
...+...|+++++++.+.+.+..+|+..|+++|.++++.+++++++++.+|||+|||++++++++..+.... .++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~-----~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----KAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC-----CSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC-----CCC
Confidence 335556799999999999999999999999999999999999999999999999999999999988876532 267
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEe
Q 019041 102 IVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLD 181 (347)
Q Consensus 102 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvD 181 (347)
++||++|+++|+.|+.+.+.++....++.+..+.|+.........+. +++|+|+||+++...+......+.+++++|+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 89999999999999999999998888889999988876544433332 57999999999999988877778899999999
Q ss_pred cchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhcccc
Q 019041 182 EADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNS 261 (347)
Q Consensus 182 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (347)
|||++.+.++...+..++..+++..+++++|||++.........++..+..+.......... .....+........
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--- 245 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLE-GIKQFYVNVEEEEY--- 245 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCC-CceEEEEEcCchhh---
Confidence 99999988899999999999988999999999999988888888888887776654332221 11111111111110
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCC
Q 019041 262 MFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGL 341 (347)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 341 (347)
....+..++.. ..++++||||+++++++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 246 -~~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gl 323 (394)
T 1fuu_A 246 -KYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 323 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCC
Confidence 11133333333 2457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCC
Q 019041 342 GRITVC 347 (347)
Q Consensus 342 dip~v~ 347 (347)
|+|+++
T Consensus 324 di~~~~ 329 (394)
T 1fuu_A 324 DVQQVS 329 (394)
T ss_dssp ------
T ss_pred CcccCC
Confidence 999874
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1e-45 Score=342.86 Aligned_cols=326 Identities=28% Similarity=0.398 Sum_probs=254.8
Q ss_pred CCCCCccccccCC----CCHHHHHHHHHCCCCCCcHHHHhhHhhhh--cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCC
Q 019041 21 DVPRPIRIFQEAN----FPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPR 94 (347)
Q Consensus 21 ~~~~~~~~~~~~~----l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~--~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~ 94 (347)
..+.+...|+.+. +++.+.+.+..+|+..|+++|.++++.++ .++++++++|||+|||++|+++++..+.....
T Consensus 11 ~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~ 90 (579)
T 3sqw_A 11 EDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF 90 (579)
T ss_dssp CSSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc
Confidence 3344444555543 99999999999999999999999999998 67899999999999999999999998876542
Q ss_pred ccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc----CCCceEEEEECCCCCchhhHhhc-CCCcEEEeChHHHHHHHhcC-
Q 019041 95 LVQGEGPIVLVLAPTRELAVQIQEEALKFGS----RAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQ- 168 (347)
Q Consensus 95 ~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~- 168 (347)
.. ..+.++||++|+++|+.|+.+.+.++.. .....+..+.++.........+. .+++|+|+||+++...+...
T Consensus 91 ~~-~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~ 169 (579)
T 3sqw_A 91 DS-QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS 169 (579)
T ss_dssp SS-TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH
T ss_pred cc-cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc
Confidence 11 2256899999999999999999998753 23456777888876555554443 36899999999999877654
Q ss_pred CCCCCcccEEEEecchhhhccCChHHHHHHHhhcC-------CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccc
Q 019041 169 HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR-------PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELK 241 (347)
Q Consensus 169 ~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-------~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (347)
...+..+++||+||||++.+++|...+..++..+. +..+++++|||++..+..+...++..+..+........
T Consensus 170 ~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~ 249 (579)
T 3sqw_A 170 NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN 249 (579)
T ss_dssp HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS
T ss_pred ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcc
Confidence 33467899999999999999999988888876653 26789999999999988888888888776665433221
Q ss_pred cc---cccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC---CCCceeecCCCCHHH
Q 019041 242 AN---QSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD---GWPALSIHGDKNQSE 315 (347)
Q Consensus 242 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~ 315 (347)
.. .......................+...+.....++++||||+++++++.+++.|.+. ++.+..+||++++.+
T Consensus 250 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~ 329 (579)
T 3sqw_A 250 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 329 (579)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHH
Confidence 11 112222222222222222233344555555566789999999999999999999876 899999999999999
Q ss_pred HHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 316 RDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 316 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
|..+++.|++|+.+|||||+++++|+|+|+|+
T Consensus 330 R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~ 361 (579)
T 3sqw_A 330 RTSLVKRFKKDESGILVCTDVGARGMDFPNVH 361 (579)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTSSCCCTTCC
T ss_pred HHHHHHHhhcCCCeEEEEcchhhcCCCcccCC
Confidence 99999999999999999999999999999975
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8.6e-46 Score=336.52 Aligned_cols=308 Identities=26% Similarity=0.416 Sum_probs=172.2
Q ss_pred CccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCE
Q 019041 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (347)
+...|+.+++++.+.++++.+||..|+++|.++++.++.+ +++++++|||+|||++|+++++..+.... .+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-----~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-----CSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-----CCCc
Confidence 3567999999999999999999999999999999999987 89999999999999999999998876543 2558
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhc-CCCCCCcccEEEE
Q 019041 103 VLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYLVL 180 (347)
Q Consensus 103 ~lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIv 180 (347)
+||++|+++|+.|+.+.+.++.... ++.+....++....... ....+|+|+||+++.+.+.. ....+.++++||+
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999999998876643 56666666665443321 23578999999999998855 3456789999999
Q ss_pred ecchhhhc-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecc-hhc
Q 019041 181 DEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE-AEK 258 (347)
Q Consensus 181 DE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 258 (347)
||+|++.+ .++...+..+...+++.+|++++|||++.....+...++..+..+........... ....+..... ..+
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~ 320 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT-IKQYYVLCSSRDEK 320 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCC-ceEEEEEeCCHHHH
Confidence 99999886 56777888888888888999999999999999999999988877766544322221 1222212211 111
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019041 259 YNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 338 (347)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 338 (347)
.. .+..++... ..+++||||+++++++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 321 ~~-----~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~ 394 (479)
T 3fmp_B 321 FQ-----ALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 394 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH-----HHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccc
Confidence 11 333333332 456999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCC
Q 019041 339 RGLGRITVC 347 (347)
Q Consensus 339 ~Gidip~v~ 347 (347)
+|+|+|+++
T Consensus 395 ~GlDip~v~ 403 (479)
T 3fmp_B 395 RGIDVEQVS 403 (479)
T ss_dssp ---------
T ss_pred cCCccccCC
Confidence 999999874
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.4e-45 Score=337.32 Aligned_cols=313 Identities=29% Similarity=0.426 Sum_probs=247.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHhhhh--cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~--~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~ 111 (347)
+++.+.+.+..+|+..|+++|.++++.++ .+++++++||||+|||++|+++++..+....... ..+.++||++|+++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~-~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS-QYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS-TTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccc-cCCeeEEEEcCcHH
Confidence 99999999999999999999999999998 6789999999999999999999999887754221 12568999999999
Q ss_pred HHHHHHHHHHHhccC----CCceEEEEECCCCCchhhHhh-cCCCcEEEeChHHHHHHHhcC-CCCCCcccEEEEecchh
Q 019041 112 LAVQIQEEALKFGSR----AGIRSTCIYGGAPKGPQIRDL-RRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDEADR 185 (347)
Q Consensus 112 l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE~h~ 185 (347)
|+.|+.+.+.++... ....+..+.++.........+ ..+++|+|+||+++...+... ...+..+++||+||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999986432 245677778877655554444 346899999999999877654 23467799999999999
Q ss_pred hhccCChHHHHHHHhhcC-------CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccc---cccceeEEEecc
Q 019041 186 MLDMGFEPQIRKIVTQIR-------PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKAN---QSINQVVEVVTE 255 (347)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~-------~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 255 (347)
+.+++|...+..++..+. +..|++++|||++..+..+...++..+..+.......... ............
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999988888876652 3678999999999988888888888877666543322111 112222222222
Q ss_pred hhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC---CCCceeecCCCCHHHHHHHHHHHhcCCCCEEE
Q 019041 256 AEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD---GWPALSIHGDKNQSERDWVLAEFRSGRSPIMT 332 (347)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 332 (347)
...........+...+.....++++||||++++.++.+++.|.+. ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 222222233344455555567789999999999999999999876 89999999999999999999999999999999
Q ss_pred EecccccCCCCCcCC
Q 019041 333 ATDVAARGLGRITVC 347 (347)
Q Consensus 333 ~T~~~~~Gidip~v~ 347 (347)
||+++++|+|+|+|+
T Consensus 398 aT~~~~~GiDip~v~ 412 (563)
T 3i5x_A 398 CTDVGARGMDFPNVH 412 (563)
T ss_dssp ECGGGTSSCCCTTCC
T ss_pred EcchhhcCCCcccCC
Confidence 999999999999875
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-43 Score=306.97 Aligned_cols=286 Identities=30% Similarity=0.492 Sum_probs=238.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHH
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 113 (347)
+++.+.+.++.+|+..|+++|.++++.+++++++++.+|||+|||++++.+++.. +.+++|++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5789999999999999999999999999999999999999999999999888765 56799999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChH
Q 019041 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEP 193 (347)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~ 193 (347)
.|+.+.+.+++...+..+..++++.........+. .++|+|+||+++.+.+......+.+++++|+||||++.++++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888888988888876655444443 48999999999999888777778899999999999999999999
Q ss_pred HHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHh
Q 019041 194 QIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKE 273 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (347)
.+..++...+...+++++|||++.........++..+..+... .........+....... . .....+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~-----~~~~~~~~ 217 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDW--R-----SKVQALRE 217 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSS--H-----HHHHHHHT
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHH--H-----HHHHHHHh
Confidence 9999999988888999999999999888888888776655322 11112222222222111 1 12233332
Q ss_pred hcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 274 VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 274 ~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
..++++||||+++++++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 218 -~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 286 (337)
T 2z0m_A 218 -NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVE 286 (337)
T ss_dssp -CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBS
T ss_pred -CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCC
Confidence 466799999999999999999887 678999999999999999999999999999999999999999874
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-45 Score=332.97 Aligned_cols=329 Identities=24% Similarity=0.385 Sum_probs=215.5
Q ss_pred HHHHHhhhccceee-ccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHH
Q 019041 4 TEVKMYRARREITV-EGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLS 80 (347)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~ 80 (347)
++++++.+.+.... .....|.+...|...++++.+.+.+...|+..|+++|.++++.++++ +++++++|||+|||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 95 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp --------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHH
Confidence 34444444444332 22223455556777789999999999999999999999999999998 9999999999999999
Q ss_pred hHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHH
Q 019041 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~ 160 (347)
++++++..+.... .+.++||++|+++|+.|+.+.+.++....++.+....++...... ...++|+|+|+++
T Consensus 175 ~~~~il~~l~~~~-----~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~ 245 (508)
T 3fho_A 175 FALTMLSRVDASV-----PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KIDAQIVIGTPGT 245 (508)
T ss_dssp HHHHHHHHSCTTC-----CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHH
T ss_pred HHHHHHHHHHhCC-----CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cCCCCEEEECHHH
Confidence 9999998876542 256899999999999999999999887777666655555433221 2358999999999
Q ss_pred HHHHHhcCCCCCCcccEEEEecchhhhc-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccc
Q 019041 161 LIDMLEAQHTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLE 239 (347)
Q Consensus 161 l~~~~~~~~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (347)
+...+......+.++++||+||||++.+ .++...+..+...+++..+++++|||++.....+...+...+..+......
T Consensus 246 l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~ 325 (508)
T 3fho_A 246 VMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEE 325 (508)
T ss_dssp HHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC
T ss_pred HHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEecccc
Confidence 9999888777888999999999999877 568888899999998899999999999998899999888887766554433
Q ss_pred cccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHH
Q 019041 240 LKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWV 319 (347)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~ 319 (347)
.... .....+....... .....+..++... .++++||||+++++++.+++.|.+.+..+..+||+++..+|..+
T Consensus 326 ~~~~-~~~~~~~~~~~~~----~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~i 399 (508)
T 3fho_A 326 LSVE-GIKQLYMDCQSEE----HKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAI 399 (508)
T ss_dssp -----CCCCEEEEC--CH----HHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGG
T ss_pred CCcc-cceEEEEECCchH----HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 2222 2222222221111 1122344444433 56799999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 320 LAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 320 ~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
++.|++|+.+|||||+++++|+|+|+++
T Consensus 400 l~~f~~g~~~VLVaT~~l~~GiDip~v~ 427 (508)
T 3fho_A 400 MDSFRVGTSKVLVTTNVIARGIDVSQVN 427 (508)
T ss_dssp THHHHSSSCCCCEECC-----CCCTTCC
T ss_pred HHHHHCCCCeEEEeCChhhcCCCccCCC
Confidence 9999999999999999999999999975
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.5e-43 Score=324.14 Aligned_cols=304 Identities=19% Similarity=0.283 Sum_probs=235.7
Q ss_pred CCccccc--cCCCCHHHHHHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCC
Q 019041 24 RPIRIFQ--EANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEG 100 (347)
Q Consensus 24 ~~~~~~~--~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~ 100 (347)
.....|. ++++++.+.+.|+. +|+..|+++|.++++.+++|+++++.+|||+|||++|+++++.. .
T Consensus 16 ~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~ 84 (591)
T 2v1x_A 16 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------D 84 (591)
T ss_dssp CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------S
T ss_pred cchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------C
Confidence 3344454 47899999999998 79999999999999999999999999999999999999998764 5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH---h---hcCCCcEEEeChHHHHH---HHh--cCC
Q 019041 101 PIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---D---LRRGVEIVIATPGRLID---MLE--AQH 169 (347)
Q Consensus 101 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~iiv~T~~~l~~---~~~--~~~ 169 (347)
.++||++|+++|+.|+.+.+.++ ++.+..+.++........ . .....+|+|+||+++.. ++. ...
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~ 160 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKA 160 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhh
Confidence 58999999999999999999986 677788888765543321 1 24568999999998742 221 112
Q ss_pred CCCCcccEEEEecchhhhccC--ChHHHHH--HHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccc
Q 019041 170 TNLRRVTYLVLDEADRMLDMG--FEPQIRK--IVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQS 245 (347)
Q Consensus 170 ~~~~~~~~iIvDE~h~~~~~~--~~~~~~~--~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (347)
..+.+++++|+||||.+.+++ |...+.. .+....+..+++++|||++......+..++..+......... ..++
T Consensus 161 ~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~n 238 (591)
T 2v1x_A 161 YEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF--NRPN 238 (591)
T ss_dssp HHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTT
T ss_pred hhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcc
Confidence 235678999999999998876 6665554 344445678999999999998877777776655433332211 1112
Q ss_pred cceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhc
Q 019041 246 INQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 325 (347)
. .+.... ...........+.+.+.....++++||||++++.++.+++.|.+.|+.+..+|+++++.+|..+++.|..
T Consensus 239 l--~~~v~~-~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~ 315 (591)
T 2v1x_A 239 L--YYEVRQ-KPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA 315 (591)
T ss_dssp E--EEEEEE-CCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred c--EEEEEe-CCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc
Confidence 1 111111 1111223344666777665577899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccCCCCCcCC
Q 019041 326 GRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 326 g~~~vlv~T~~~~~Gidip~v~ 347 (347)
|+.+|||||+++++|||+|+|+
T Consensus 316 g~~~VlVAT~a~~~GID~p~V~ 337 (591)
T 2v1x_A 316 NEIQVVVATVAFGMGIDKPDVR 337 (591)
T ss_dssp TSSSEEEECTTSCTTCCCSCEE
T ss_pred CCCeEEEEechhhcCCCccccc
Confidence 9999999999999999999974
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.7e-42 Score=314.30 Aligned_cols=294 Identities=20% Similarity=0.302 Sum_probs=227.9
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEE
Q 019041 26 IRIFQEANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (347)
Q Consensus 26 ~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (347)
|..|+++++++.+.+.|++ +|+..|+++|.++++.+++++++++.+|||+|||++|+++++.. ..++|
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~l 69 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTV 69 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEE
Confidence 4679999999999999998 99999999999999999999999999999999999999998754 45799
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---H-hhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEE
Q 019041 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---R-DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (347)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (347)
|++|+++|+.|+.+.+.++ ++.+..++++....... . ......+|+++||+++........+...+++++|+
T Consensus 70 vi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred EECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 9999999999999999875 66777777776543322 1 12345899999999985322111223467899999
Q ss_pred ecchhhhccC--ChHHHHHH---HhhcCCCccEEEEEeecchhHHHHHHHhcC--CCeEEEecccccccccccceeEEEe
Q 019041 181 DEADRMLDMG--FEPQIRKI---VTQIRPDRQTLYWSATWPREVETLARQFLR--NPYKVIIGSLELKANQSINQVVEVV 253 (347)
Q Consensus 181 DE~h~~~~~~--~~~~~~~~---~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (347)
||||.+.+++ |...+..+ ...+ +..+++++|||+.......+...++ ++.. ...... .++. .+...
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~---r~~l--~~~v~ 218 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISSFD---RPNI--RYMLM 218 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEE-EECCCC---CTTE--EEEEE
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeE-EeCCCC---CCce--EEEEE
Confidence 9999998776 66655544 3333 5688999999998876554444333 3332 222211 1121 22222
Q ss_pred cchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEE
Q 019041 254 TEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA 333 (347)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 333 (347)
.... ....+.+.+... .++++||||+++++++.+++.|++.|+.+..+||++++++|..+++.|.+|+.+||||
T Consensus 219 ~~~~-----~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVa 292 (523)
T 1oyw_A 219 EKFK-----PLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVA 292 (523)
T ss_dssp ECSS-----HHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred eCCC-----HHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 2222 223566666554 5679999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCCcCC
Q 019041 334 TDVAARGLGRITVC 347 (347)
Q Consensus 334 T~~~~~Gidip~v~ 347 (347)
|+++++|||+|+|+
T Consensus 293 T~a~~~GiD~p~v~ 306 (523)
T 1oyw_A 293 TVAFGMGINKPNVR 306 (523)
T ss_dssp CTTSCTTTCCTTCC
T ss_pred echhhCCCCccCcc
Confidence 99999999999985
No 18
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.2e-41 Score=281.29 Aligned_cols=238 Identities=67% Similarity=1.101 Sum_probs=216.4
Q ss_pred CChHHHHHhhhccceeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
+++++++.+++++++.+.+.+.|.|...|+++++++.+.+.+..+|+..|+++|.++++.+++|+++++++|||+|||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHH
Q 019041 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~ 160 (347)
|+++++..+...+......++++||++|+++|+.|+.+.+.++....++.+..++|+.........+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999998876544333457889999999999999999999998888999999999988777777777789999999999
Q ss_pred HHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEeccc
Q 019041 161 LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSL 238 (347)
Q Consensus 161 l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~ 238 (347)
+.+.+......+.+++++|+||||++.+++|...+..+++.+++..|++++|||++..+..+.+.++.+|..+.+...
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999998888888999999999999999999999999999999889999999999999999999999999988777543
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.3e-40 Score=315.89 Aligned_cols=303 Identities=19% Similarity=0.189 Sum_probs=230.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhh-hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE
Q 019041 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li 105 (347)
++|+++++++.+.+.++.+|+..|+++|.++++. +.+++++++++|||+|||+++.++++..+... +.+++|
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~ 73 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVY 73 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEE
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEE
Confidence 3699999999999999999999999999999998 88899999999999999999988988777632 568999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh
Q 019041 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (347)
++|+++|+.|+.+.++++.. .++++..++|+....... ...++|+|+||+++...+......++++++||+||+|.
T Consensus 74 i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred EcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 99999999999999976543 478888998876554432 23689999999999988877666678999999999999
Q ss_pred hhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEeccccccccc---ccceeEEEecchhccccH
Q 019041 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQ---SINQVVEVVTEAEKYNSM 262 (347)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 262 (347)
+.+..++..+..++..++...+++++|||++.. ..+.+ +++.+. +. ......+.. ..................
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~-~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IV-SDWRPVKLRRGVFYQGFVTWEDGSIDRFSS 225 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EE-CCCCSSEEEEEEEETTEEEETTSCEEECSS
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cC-CCCCCCcceEEEEeCCeeeccccchhhhhH
Confidence 988788888888888887788999999998653 34443 433211 11 110000000 000001111100000111
Q ss_pred HHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC---------------------------------CCCceeecC
Q 019041 263 FICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD---------------------------------GWPALSIHG 309 (347)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~---------------------------------~~~~~~~~~ 309 (347)
....+.+.+ ..++++||||+++++++.++..|.+. ...+..+|+
T Consensus 226 ~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 226 WEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp TTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 122333333 35689999999999999999988642 124888999
Q ss_pred CCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 310 DKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 310 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
++++++|..+++.|++|..+|||||+++++|+|+|+++
T Consensus 303 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~ 340 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFR 340 (720)
T ss_dssp TSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceE
Confidence 99999999999999999999999999999999999873
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.3e-40 Score=311.35 Aligned_cols=305 Identities=20% Similarity=0.239 Sum_probs=230.8
Q ss_pred CccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhh-hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEE
Q 019041 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (347)
+.+.|+++++++.+.+.++.+|+..|+++|.++++. +.+++++++++|||+|||+++.++++..+... +.++
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~i 78 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKA 78 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeE
Confidence 446799999999999999999999999999999998 78899999999999999999999998876642 5689
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecc
Q 019041 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEA 183 (347)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~ 183 (347)
+|++|+++|+.|+.+.++.+. ..++++..+.|+........ ..++|+|+||+++...+......++++++||+||+
T Consensus 79 l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~~---~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 154 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAWL---KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDEL 154 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGGG---GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSG
T ss_pred EEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhhc---CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEech
Confidence 999999999999999996553 34788888888766544321 26899999999999988776666789999999999
Q ss_pred hhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccc--------cceeEEEecc
Q 019041 184 DRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQS--------INQVVEVVTE 255 (347)
Q Consensus 184 h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 255 (347)
|.+.+..++..+..++..++ ..+++++|||++. ...+.+ +++.+. +............ ..........
T Consensus 155 H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (715)
T 2va8_A 155 HYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDN 230 (715)
T ss_dssp GGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTS
T ss_pred hhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCc-cCCCCCCCCceEEEEecCCcccceeeecCcc
Confidence 99887778888888877775 7899999999865 244444 333221 1110000000000 0000111110
Q ss_pred h-hcc--ccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCC-------------------------------
Q 019041 256 A-EKY--NSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG------------------------------- 301 (347)
Q Consensus 256 ~-~~~--~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~------------------------------- 301 (347)
. ... .......+.+.+ ..++++||||+++++++.+++.|.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 307 (715)
T 2va8_A 231 TTKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELL 307 (715)
T ss_dssp CEEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHH
Confidence 0 000 112222333333 357899999999999999999997642
Q ss_pred -----CCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 302 -----WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 302 -----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
..+..+||+++.++|..+++.|++|..+|||||+++++|+|+|+++
T Consensus 308 ~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~ 358 (715)
T 2va8_A 308 KSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPART 358 (715)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSE
T ss_pred HHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceE
Confidence 2488899999999999999999999999999999999999999874
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.8e-40 Score=311.87 Aligned_cols=302 Identities=20% Similarity=0.240 Sum_probs=225.0
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE
Q 019041 28 IFQEAN--FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (347)
Q Consensus 28 ~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li 105 (347)
+|++++ +++.+.+.++.+||..|+++|.++++.+.+++++++++|||+|||+++.++++..+.. +.+++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 588888 9999999999999999999999999999999999999999999999999998887664 567999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh
Q 019041 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (347)
++|+++|+.|+.+.++++.. .++++..+.|+...... ....++|+|+||+++...+......++++++||+||+|.
T Consensus 74 i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 99999999999999965533 47888888887655443 123689999999999998887666678999999999999
Q ss_pred hhccCChHHHHHHHhhc---CCCccEEEEEeecchhHHHHHHHhcCCCeEEEeccccccccc--ccceeEEEecchhc--
Q 019041 186 MLDMGFEPQIRKIVTQI---RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQ--SINQVVEVVTEAEK-- 258 (347)
Q Consensus 186 ~~~~~~~~~~~~~~~~~---~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-- 258 (347)
+.+++++..+..++..+ .+..+++++|||++. ...+.+ +++.+. +........... ..............
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 226 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWRPVPLVEGVLCEGTLELFDGAFSTS 226 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCCSSCEEEEEECSSEEEEEETTEEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCCCccceEEEeeCCeeeccCcchhhh
Confidence 88877777777665555 578899999999875 344444 444322 111100000000 00000111111000
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC------------------------------CCCceeec
Q 019041 259 YNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD------------------------------GWPALSIH 308 (347)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~------------------------------~~~~~~~~ 308 (347)
........+.+.+ .+++++||||+++++++.+++.|.+. +..+..+|
T Consensus 227 ~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h 303 (702)
T 2p6r_A 227 RRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303 (702)
T ss_dssp EECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEEC
T ss_pred hhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEec
Confidence 0000222333333 35789999999999999999988642 23578899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 309 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 309 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
|++++++|..+++.|++|..+|||||+++++|+|+|+++
T Consensus 304 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~ 342 (702)
T 2p6r_A 304 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARR 342 (702)
T ss_dssp TTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceE
Confidence 999999999999999999999999999999999999873
No 22
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.5e-39 Score=290.25 Aligned_cols=278 Identities=21% Similarity=0.271 Sum_probs=209.4
Q ss_pred HHHHHHHH-CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHH
Q 019041 37 YCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (347)
Q Consensus 37 ~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 115 (347)
.+.+.++. +|+ .|+++|.++++.+++++++++++|||+|||++++++++..... ++++||++|+++|+.|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~--------~~~~lil~Pt~~L~~q 79 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQ 79 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC--------CCEEEEEECCHHHHHH
Confidence 34455555 577 8999999999999999999999999999999888887776532 6789999999999999
Q ss_pred HHHHHHHhccCCCceEEEEECCCCC---chhhHhhcCC-CcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc---
Q 019041 116 IQEEALKFGSRAGIRSTCIYGGAPK---GPQIRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD--- 188 (347)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~--- 188 (347)
+.+.+.+++. .++++..++|+... ......+..+ ++|+|+||+++.+.+.. ..+.+++++|+||||++..
T Consensus 80 ~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 80 TLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 9999999887 78899999999876 3344444444 89999999999877654 4456899999999997654
Q ss_pred --------cCChHH-HHHHHhhcC-----------CCccEEEEEee-cchhHH-HHHHHhcCCCeEEEeccccccccccc
Q 019041 189 --------MGFEPQ-IRKIVTQIR-----------PDRQTLYWSAT-WPREVE-TLARQFLRNPYKVIIGSLELKANQSI 246 (347)
Q Consensus 189 --------~~~~~~-~~~~~~~~~-----------~~~~~i~lsaT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (347)
.+|... +..++..++ +..+++++||| ++.... .+...+..-. .... .......
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~i 231 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT----VGRL-VSVARNI 231 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCC----SSCC-CCCCCSE
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccC----cCcc-ccccccc
Confidence 456666 777777765 77899999999 444333 2333333210 0000 0111111
Q ss_pred ceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCce-eecCCCCHHHHHHHHHHHhc
Q 019041 247 NQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPAL-SIHGDKNQSERDWVLAEFRS 325 (347)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~ 325 (347)
...+... .+ ...+.+++.. .++++||||+++++++.+++.|.+.|+.+. .+||. +|. ++.|++
T Consensus 232 ~~~~~~~---~~-----~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~ 295 (414)
T 3oiy_A 232 THVRISS---RS-----KEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKV 295 (414)
T ss_dssp EEEEESS---CC-----HHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHT
T ss_pred hheeecc---CH-----HHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhC
Confidence 2222111 11 1245555555 348999999999999999999999999998 88884 344 999999
Q ss_pred CCCCEEEE----ecccccCCCCCc-CC
Q 019041 326 GRSPIMTA----TDVAARGLGRIT-VC 347 (347)
Q Consensus 326 g~~~vlv~----T~~~~~Gidip~-v~ 347 (347)
|+.+|||| |+++++|+|+|+ |+
T Consensus 296 g~~~vLvat~s~T~~~~~GiDip~~v~ 322 (414)
T 3oiy_A 296 GKINILIGVQAYYGKLTRGVDLPERIK 322 (414)
T ss_dssp TSCSEEEEECCTTCCCCCCCCCTTTCC
T ss_pred CCCeEEEEecCcCchhhccCccccccC
Confidence 99999999 999999999998 64
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.5e-39 Score=308.60 Aligned_cols=306 Identities=20% Similarity=0.235 Sum_probs=197.1
Q ss_pred HHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH
Q 019041 39 LEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (347)
Q Consensus 39 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 118 (347)
...+..+|+..|+++|.++++.++.++++++++|||+|||++++++++..+...+. +.+.++||++|+++|+.||.+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~ 79 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKS 79 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999988766432 113689999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC-CCCcccEEEEecchhhhccC-ChHHHH
Q 019041 119 EALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMG-FEPQIR 196 (347)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~-~~~~~~ 196 (347)
.+.++....++++..++|+.........+..+++|+|+||+.+.+.+..... .+.++++||+||||++.... +...+.
T Consensus 80 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 80 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 9999988778999999998876666555556799999999999999887766 67889999999999987554 222332
Q ss_pred HHHhh-----cCCCccEEEEEeecc-------hh-HHHHHH---------------------HhcCCCeEEEeccccccc
Q 019041 197 KIVTQ-----IRPDRQTLYWSATWP-------RE-VETLAR---------------------QFLRNPYKVIIGSLELKA 242 (347)
Q Consensus 197 ~~~~~-----~~~~~~~i~lsaT~~-------~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 242 (347)
..+.. ..+..++++||||+. .. ...+.. .+...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 23322 135679999999986 11 111111 111222211110000000
Q ss_pred -------c--------------c---ccc-----------------------eeEEEe----------------------
Q 019041 243 -------N--------------Q---SIN-----------------------QVVEVV---------------------- 253 (347)
Q Consensus 243 -------~--------------~---~~~-----------------------~~~~~~---------------------- 253 (347)
. . ... ......
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 0 0 000 000000
Q ss_pred ----------------------------------------------------cchhccccHHHHHHHHHHHhh---cCCC
Q 019041 254 ----------------------------------------------------TEAEKYNSMFICRLIKLLKEV---MDGS 278 (347)
Q Consensus 254 ----------------------------------------------------~~~~~~~~~~~~~l~~~~~~~---~~~~ 278 (347)
.............+.+++... .+++
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 000001223344555666554 3567
Q ss_pred eEEEEecCcccHHHHHHHHhhCC----CCceee--------cCCCCHHHHHHHHHHHhc-CCCCEEEEecccccCCCCCc
Q 019041 279 RILIFTETKKGCDQVTRQLRMDG----WPALSI--------HGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 279 ~~lvf~~~~~~~~~~~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~ 345 (347)
++||||+++++++.+++.|++.| +.+..+ |++++..+|..++++|++ |+.+|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 99999999999999999999887 788888 459999999999999998 99999999999999999999
Q ss_pred CC
Q 019041 346 VC 347 (347)
Q Consensus 346 v~ 347 (347)
|+
T Consensus 480 v~ 481 (696)
T 2ykg_A 480 CN 481 (696)
T ss_dssp CS
T ss_pred CC
Confidence 85
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.5e-39 Score=298.20 Aligned_cols=299 Identities=18% Similarity=0.202 Sum_probs=173.8
Q ss_pred CCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
+...|+++|.++++.++.++++++++|||+|||++++++++..+...+. ..+.++||++|+++|+.||.+.+.++..
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4458999999999999999999999999999999999999988876542 1266899999999999999999999988
Q ss_pred CCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC-CCCcccEEEEecchhhhccCChHH-HHHHHhh-c
Q 019041 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMGFEPQ-IRKIVTQ-I 202 (347)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~~~~~-~~~~~~~-~ 202 (347)
..++.+..++|+.........+..+++|+|+||+++...+..... .+.+++++|+||||++.+++.... +...+.. .
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 778999999999877666666666789999999999999988776 788999999999999977653222 2222222 1
Q ss_pred ---CCCccEEEEEeecchh-----------HHHHHHH------------------hcCCCeEEEeccccccccc------
Q 019041 203 ---RPDRQTLYWSATWPRE-----------VETLARQ------------------FLRNPYKVIIGSLELKANQ------ 244 (347)
Q Consensus 203 ---~~~~~~i~lsaT~~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~------ 244 (347)
.+..+++++|||+... +..+... +...|..............
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 3557899999998431 1111111 1111221111100000000
Q ss_pred ----c---c----c---eeEEE-------------ecc------------------------------------------
Q 019041 245 ----S---I----N---QVVEV-------------VTE------------------------------------------ 255 (347)
Q Consensus 245 ----~---~----~---~~~~~-------------~~~------------------------------------------ 255 (347)
. . . ..... ...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 0 00000 000
Q ss_pred ---------------------------------------------hhccccHHHHHHHHHHHhh---cCCCeEEEEecCc
Q 019041 256 ---------------------------------------------AEKYNSMFICRLIKLLKEV---MDGSRILIFTETK 287 (347)
Q Consensus 256 ---------------------------------------------~~~~~~~~~~~l~~~~~~~---~~~~~~lvf~~~~ 287 (347)
...........+.+++.+. ..++++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 0000122333444555433 4678999999999
Q ss_pred ccHHHHHHHHhhC------------CCCceeecCCCCHHHHHHHHHHHhc-CCCCEEEEecccccCCCCCcCC
Q 019041 288 KGCDQVTRQLRMD------------GWPALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 288 ~~~~~~~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+++..+++.|.+. |.....+||+++..+|..+++.|++ |+.+|||||+++++|+|+|+|+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~ 473 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN 473 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------C
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCC
Confidence 9999999999875 4555566778999999999999999 9999999999999999999975
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-39 Score=311.74 Aligned_cols=300 Identities=16% Similarity=0.167 Sum_probs=226.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc
Q 019041 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (347)
Q Consensus 28 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 107 (347)
.|...++++.+...+...+.-.|+++|.++++.+..+++++++||||+|||++|.++++..+.. +.+++|++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEc
Confidence 4666677777776666666668999999999999999999999999999999999999888754 67899999
Q ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 108 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
|+++|+.|+.+.+.++.. .+..++|+.... .+++|+|+||+.|.+.+......+.++++||+||||++.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999998644 456677776543 248999999999999988877777889999999999998
Q ss_pred ccCChHHHHHHHhhcCCCccEEEEEeecchhH--HHHHHHhcCCCeEEEecccccccccc------cceeEEEecchhcc
Q 019041 188 DMGFEPQIRKIVTQIRPDRQTLYWSATWPREV--ETLARQFLRNPYKVIIGSLELKANQS------INQVVEVVTEAEKY 259 (347)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 259 (347)
+.+++..+..++..+++..++++||||++... ...+......+..+........+... ....+.........
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~ 383 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTF 383 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEE
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccch
Confidence 88889999999999999999999999987643 34445555555544443322111100 00001111100000
Q ss_pred -----------------------------------------ccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHh
Q 019041 260 -----------------------------------------NSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLR 298 (347)
Q Consensus 260 -----------------------------------------~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~ 298 (347)
.......++..+.. ...+++||||++++.|+.++..|.
T Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~~L~ 462 (1108)
T 3l9o_A 384 REENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMS 462 (1108)
T ss_dssp CHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHHHHH
Confidence 01122233333333 245699999999999999999986
Q ss_pred hCCCC---------------------------------------ceeecCCCCHHHHHHHHHHHhcCCCCEEEEeccccc
Q 019041 299 MDGWP---------------------------------------ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAAR 339 (347)
Q Consensus 299 ~~~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 339 (347)
..++. +..+||++++.+|..+++.|++|..+|||||+++++
T Consensus 463 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~ 542 (1108)
T 3l9o_A 463 KLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSI 542 (1108)
T ss_dssp SHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCS
T ss_pred hccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhc
Confidence 53221 688999999999999999999999999999999999
Q ss_pred CCCCCcCC
Q 019041 340 GLGRITVC 347 (347)
Q Consensus 340 Gidip~v~ 347 (347)
|||+|+++
T Consensus 543 GIDiP~v~ 550 (1108)
T 3l9o_A 543 GLNMPAKT 550 (1108)
T ss_dssp CCCC--CE
T ss_pred CCCCCCce
Confidence 99999874
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.1e-38 Score=290.58 Aligned_cols=166 Identities=22% Similarity=0.245 Sum_probs=138.0
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.|+++|.++++.++.++++++.+|||+|||++++++++..+...+. ..+.++||++|+++|+.||.+.+.++....+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 7999999999999999999999999999999999999988876542 1266899999999999999999999988789
Q ss_pred ceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC-CCCcccEEEEecchhhhccC-ChHHHHHHHhhc----
Q 019041 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQI---- 202 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~---- 202 (347)
+.+..++|+.........+..+++|+|+||+++...+..... .+.+++++|+||||++...+ +...+...+...
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSC
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccc
Confidence 999999999876666555666789999999999999887776 67889999999999987764 233333333332
Q ss_pred -CCCccEEEEEeecch
Q 019041 203 -RPDRQTLYWSATWPR 217 (347)
Q Consensus 203 -~~~~~~i~lsaT~~~ 217 (347)
.+..+++++|||+..
T Consensus 161 ~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGV 176 (555)
T ss_dssp CSCCCEEEEEESCCCC
T ss_pred cCCCCeEEEEecCccc
Confidence 245689999999854
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.1e-37 Score=296.57 Aligned_cols=301 Identities=18% Similarity=0.201 Sum_probs=180.0
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.+|+..|+++|.++++.++.++++++++|||+|||++++++++..+...+. +.+.++||++|+++|+.||.+.+.++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999988876532 12668999999999999999999999
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC-CCCcccEEEEecchhhhccCC-hHHHHHHHhh
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMGF-EPQIRKIVTQ 201 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~~-~~~~~~~~~~ 201 (347)
....++++..++|+.........+..+++|+|+||+++...+..... .+.++++||+||||++..... ...+..++..
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred cccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88778999999999877666666666899999999999999887766 688899999999999876542 2222233322
Q ss_pred c----CCCccEEEEEeecch-----------hHHHHHH------------------HhcCCCeEEEeccccccccc----
Q 019041 202 I----RPDRQTLYWSATWPR-----------EVETLAR------------------QFLRNPYKVIIGSLELKANQ---- 244 (347)
Q Consensus 202 ~----~~~~~~i~lsaT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~---- 244 (347)
. .+..+++++|||+.. .+..+.. .+...+..............
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 1 456789999999853 1111111 11122221111000000000
Q ss_pred ----------ccceeE-----E-E-------------ecc----------------------------------------
Q 019041 245 ----------SINQVV-----E-V-------------VTE---------------------------------------- 255 (347)
Q Consensus 245 ----------~~~~~~-----~-~-------------~~~---------------------------------------- 255 (347)
.....+ . . ...
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000000 0 0 000
Q ss_pred -----------------------------------------------hhccccHHHHHHHHHHHhh---cCCCeEEEEec
Q 019041 256 -----------------------------------------------AEKYNSMFICRLIKLLKEV---MDGSRILIFTE 285 (347)
Q Consensus 256 -----------------------------------------------~~~~~~~~~~~l~~~~~~~---~~~~~~lvf~~ 285 (347)
...........+.+++.+. .+++++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 0000112233344444432 45689999999
Q ss_pred CcccHHHHHHHHhhC------------CCCceeecCCCCHHHHHHHHHHHhc-CCCCEEEEecccccCCCCCcCC
Q 019041 286 TKKGCDQVTRQLRMD------------GWPALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 286 ~~~~~~~~~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+++++..+++.|++. |.....+||+++..+|..+++.|++ |+.+|||||+++++|||+|+|+
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~ 714 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN 714 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCS
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCC
Confidence 999999999999863 5556667888999999999999999 9999999999999999999985
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-36 Score=276.40 Aligned_cols=290 Identities=21% Similarity=0.228 Sum_probs=209.3
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.|+++|.+++..+.++ ++++.+|||+|||++++.++...+.. .+.++||++|+++|+.||.+++.++....+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999998 99999999999999999888877652 266899999999999999999999865455
Q ss_pred ceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccE
Q 019041 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (347)
..+..++|+...... .....+++|+|+||+.+...+........++++||+||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 578888887655432 2233357999999999999888777778899999999999987654444455555555678899
Q ss_pred EEEEeecchhHH---HHHHHhcCCCeEEEecccc-ccccccc--ceeEEEe-cc--------------------------
Q 019041 209 LYWSATWPREVE---TLARQFLRNPYKVIIGSLE-LKANQSI--NQVVEVV-TE-------------------------- 255 (347)
Q Consensus 209 i~lsaT~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~-~~-------------------------- 255 (347)
+++||||..... .+...+............. ....... ....... ..
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999974432 2333222111111000000 0000000 0000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 019041 256 -------------------------------------------------------------------------------- 255 (347)
Q Consensus 256 -------------------------------------------------------------------------------- 255 (347)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred -----------------hhccccHHHHHHHHHHHhh---cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecC------
Q 019041 256 -----------------AEKYNSMFICRLIKLLKEV---MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHG------ 309 (347)
Q Consensus 256 -----------------~~~~~~~~~~~l~~~~~~~---~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~------ 309 (347)
...........+.+++... ..++++||||++++.++.+++.|.+.|+.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 0001122333455555543 46789999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 310 --DKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 310 --~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+++..+|..++++|++|+.+|||||+++++|+|+|+++
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~ 439 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVD 439 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCC
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCC
Confidence 99999999999999999999999999999999999875
No 29
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=4.5e-37 Score=252.97 Aligned_cols=214 Identities=32% Similarity=0.527 Sum_probs=177.6
Q ss_pred eccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCcc
Q 019041 17 VEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV 96 (347)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~ 96 (347)
....+.+.+...|+++++++.+.+++..+||..|+++|.++++.+++++++++++|||+|||++|+++++..+....
T Consensus 20 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~--- 96 (237)
T 3bor_A 20 VIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF--- 96 (237)
T ss_dssp -------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS---
T ss_pred cccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---
Confidence 34566778888999999999999999999999999999999999999999999999999999999999998875432
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCC-CcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 97 QGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 97 ~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
.+.++||++|+++|+.|+.+.+.+++...++.+..+.|+.........+..+ ++|+|+||+++.+.+......+.++
T Consensus 97 --~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 97 --KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred --CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 2668999999999999999999999888888888888887766555555444 8999999999999988877778899
Q ss_pred cEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEe
Q 019041 176 TYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (347)
Q Consensus 176 ~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~ 235 (347)
+++|+||||++.+.++...+..++..+++..|++++|||++..+..+.+.++.+|..+.+
T Consensus 175 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 175 KMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp CEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred cEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999988999999999999888999999999999999999999998876644
No 30
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.7e-37 Score=250.82 Aligned_cols=216 Identities=51% Similarity=0.883 Sum_probs=185.3
Q ss_pred ccCCCCCCcccccc-CCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCcc
Q 019041 18 EGHDVPRPIRIFQE-ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV 96 (347)
Q Consensus 18 ~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~ 96 (347)
+....|.|...|++ +++++.+.+++..+|+..|+++|.++++.+++++++++++|||+|||++|+++++..+.......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 35567889999999 79999999999999999999999999999999999999999999999999999988776432111
Q ss_pred -CCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 97 -QGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 97 -~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
...++++||++|+++|+.|+.+.+.++. ..++.+..++|+.........+..+++|+|+||+++...+......+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 1236789999999999999999999986 45788889999888877777777889999999999999988888888999
Q ss_pred cEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEE
Q 019041 176 TYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVI 234 (347)
Q Consensus 176 ~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~ 234 (347)
+++|+||||++.+.++...+..++..+++..|++++|||++..+..+...++.+|..+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999988999999999999999999999999887654
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-36 Score=290.86 Aligned_cols=282 Identities=17% Similarity=0.221 Sum_probs=213.3
Q ss_pred HHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH
Q 019041 42 IAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (347)
Q Consensus 42 l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 121 (347)
...++| .|+++|.++++.+.+++++++++|||+|||+++.++++..+.. +.+++|++|+++|+.|+.+.+.
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHH
Confidence 344677 5999999999999999999999999999999998888877643 6789999999999999999999
Q ss_pred HhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhh
Q 019041 122 KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (347)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (347)
++.. .+..++|+..... .++|+|+|++.+...+......+.++++||+||+|.+.+.+++..+..++..
T Consensus 151 ~~~~----~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~ 219 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL 219 (1010)
T ss_dssp HHHS----CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH
T ss_pred HHhC----CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHh
Confidence 8644 5666777654332 4789999999999888877777889999999999999988888889999999
Q ss_pred cCCCccEEEEEeecchhHH--HHHHHhcCCCeEEEecccccccccccceeEE---------Eecchhcc-----------
Q 019041 202 IRPDRQTLYWSATWPREVE--TLARQFLRNPYKVIIGSLELKANQSINQVVE---------VVTEAEKY----------- 259 (347)
Q Consensus 202 ~~~~~~~i~lsaT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~----------- 259 (347)
+++..+++++|||++.... ..+....+.+..+........ .....+. ........
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~---pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT---PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSS---CEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc---cceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 9889999999999876432 222223344444433322111 1111111 01100000
Q ss_pred ----------------------c--------cHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCC------
Q 019041 260 ----------------------N--------SMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWP------ 303 (347)
Q Consensus 260 ----------------------~--------~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~------ 303 (347)
. ......+...+... ...++||||++++.++.+++.|...++.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 0 11122333433332 3458999999999999999999765442
Q ss_pred ---------------------------------ceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 304 ---------------------------------ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 304 ---------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce
Confidence 67899999999999999999999999999999999999999863
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.5e-37 Score=299.01 Aligned_cols=301 Identities=19% Similarity=0.207 Sum_probs=180.9
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
-.|+..|+++|.++++.++.|+++++.+|||+|||++++++++..+...+. +.+.++||++|+++|+.||.+.+.++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS---SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 346779999999999999999999999999999999999999888766432 12568999999999999999999998
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC-CCCcccEEEEecchhhhccC-ChHHHHHHHhh
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQ 201 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~ 201 (347)
....++++..++|+.........+..+++|+|+||+++...+..... .+.++++||+||||++.... +...+..++..
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88778999999999876655555555789999999999999887766 67889999999999987654 23333333332
Q ss_pred c----CCCccEEEEEeecchh-----------HHHHH------------------HHhcCCCeEEEeccccccccc--c-
Q 019041 202 I----RPDRQTLYWSATWPRE-----------VETLA------------------RQFLRNPYKVIIGSLELKANQ--S- 245 (347)
Q Consensus 202 ~----~~~~~~i~lsaT~~~~-----------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--~- 245 (347)
. .+..+++++|||+... +..+. ..+...|.............. .
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1 4557899999998421 11111 112222222211110000000 0
Q ss_pred ----------c-ce---------eEEE--ec--------c----------------------------------------
Q 019041 246 ----------I-NQ---------VVEV--VT--------E---------------------------------------- 255 (347)
Q Consensus 246 ----------~-~~---------~~~~--~~--------~---------------------------------------- 255 (347)
. .. .... .. .
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00 0000 00 0
Q ss_pred -----------------------------------------------hhccccHHHHHHHHHHHhh---cCCCeEEEEec
Q 019041 256 -----------------------------------------------AEKYNSMFICRLIKLLKEV---MDGSRILIFTE 285 (347)
Q Consensus 256 -----------------------------------------------~~~~~~~~~~~l~~~~~~~---~~~~~~lvf~~ 285 (347)
...........+.+++.+. ..++++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0000122333445555543 35689999999
Q ss_pred CcccHHHHHHHHhhC------------CCCceeecCCCCHHHHHHHHHHHhc-CCCCEEEEecccccCCCCCcCC
Q 019041 286 TKKGCDQVTRQLRMD------------GWPALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 286 ~~~~~~~~~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~v~ 347 (347)
++++++.+++.|.+. |.....+||+++..+|..+++.|++ |+.+|||||+++++|||+|+|+
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~ 714 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN 714 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCS
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCC
Confidence 999999999999876 5555566888999999999999999 9999999999999999999985
No 33
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=247.80 Aligned_cols=228 Identities=32% Similarity=0.467 Sum_probs=193.2
Q ss_pred ChHHHHHhhhccceeeccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHh
Q 019041 2 TETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (347)
+.++++.+.+++.. ..+.+...|+++++++.+.+.|..+|+..|+++|.++++.+++++++++++|||+|||++|
T Consensus 5 ~~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 5 ERESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cHhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 45677777776652 2346677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH
Q 019041 82 LLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL 161 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l 161 (347)
+++++..+....... ..+.++||++|+++|+.|+.+.+.+++...++.+..++|+.........+ .+++|+|+||+++
T Consensus 80 ~~~~l~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l 157 (236)
T 2pl3_A 80 LVPVLEALYRLQWTS-TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRL 157 (236)
T ss_dssp HHHHHHHHHHTTCCG-GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHH
T ss_pred HHHHHHHHHhhcccc-cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHH
Confidence 999998876532111 12678999999999999999999999888888999999887765554444 4689999999999
Q ss_pred HHHHhcC-CCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEec
Q 019041 162 IDMLEAQ-HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (347)
Q Consensus 162 ~~~~~~~-~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~ 236 (347)
...+... ...+.+++++|+||||++.++++...+..++..+++..|++++|||++..+..+.+.++.+|..+.+.
T Consensus 158 ~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 158 LQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9887654 45677899999999999999999999999999998899999999999999999999999988876553
No 34
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.6e-36 Score=242.71 Aligned_cols=202 Identities=32% Similarity=0.587 Sum_probs=181.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEE
Q 019041 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil 106 (347)
..|+++++++.+.+.+..+|+..|+++|.++++.+++++++++.+|||+|||++++++++..+.... .+.+++|+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-----~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK-----DNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS-----CSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC-----CCeeEEEE
Confidence 4699999999999999999999999999999999999999999999999999999999988765432 26689999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchh
Q 019041 107 APTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (347)
Q Consensus 107 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (347)
+|+++|+.|+.+.+.++.... +..+..+.|+............+++|+|+||+++...+......+.+++++|+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999987766 7788888888876666666677899999999999999888777788999999999999
Q ss_pred hhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEE
Q 019041 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKV 233 (347)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~ 233 (347)
+.+.++...+..++..+++..+++++|||++..+..+++.++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 998889999999999998889999999999999999999999888643
No 35
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8e-37 Score=297.68 Aligned_cols=271 Identities=21% Similarity=0.274 Sum_probs=208.5
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.+|| .|+++|.++++.+++|++++++||||+|||++++.+++..+.. +.++||++|+++|+.|+.+.+.++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~--------~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------CCeEEEEechHHHHHHHHHHHHHh
Confidence 3788 7999999999999999999999999999999887777776532 678999999999999999999998
Q ss_pred ccCCCceEEEEECCCCC---chhhHhhcCC-CcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhc-----------
Q 019041 124 GSRAGIRSTCIYGGAPK---GPQIRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD----------- 188 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~----------- 188 (347)
+ ..++++..++|+.+. ......+..+ ++|+|+||+++.+.+.. ..+.++++||+||||++..
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHh
Confidence 7 678899999999887 4445556555 89999999999877653 4467899999999987654
Q ss_pred cCChHH-HHHHHhhcC-----------CCccEEEEEee-cchhHH-HHHHHhcCCCeEEEecccccccccccceeEEEec
Q 019041 189 MGFEPQ-IRKIVTQIR-----------PDRQTLYWSAT-WPREVE-TLARQFLRNPYKVIIGSLELKANQSINQVVEVVT 254 (347)
Q Consensus 189 ~~~~~~-~~~~~~~~~-----------~~~~~i~lsaT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (347)
.+|... +..++..++ +..|++++||| .+..+. .+....+. +.+.... .........+...
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS- 295 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec-
Confidence 566666 788887766 78899999999 444333 23333332 1111111 1111222222111
Q ss_pred chhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCce-eecCCCCHHHHHHHHHHHhcCCCCEEEE
Q 019041 255 EAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPAL-SIHGDKNQSERDWVLAEFRSGRSPIMTA 333 (347)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 333 (347)
.+. ..+.+++... ++++||||++++.++.++..|++.|+.+. .+|| +|.+ ++.|++|+.+||||
T Consensus 296 --~k~-----~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 296 --RSK-----EKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp --CCH-----HHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEE
T ss_pred --CHH-----HHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEE
Confidence 121 2455555552 48999999999999999999999999998 9998 2455 99999999999999
Q ss_pred ----ecccccCCCCCc-CC
Q 019041 334 ----TDVAARGLGRIT-VC 347 (347)
Q Consensus 334 ----T~~~~~Gidip~-v~ 347 (347)
|+++++|+|+|+ |+
T Consensus 361 tas~TdvlarGIDip~~V~ 379 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIK 379 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCC
T ss_pred ecCCCCeeEecCcCCCCCC
Confidence 999999999999 64
No 36
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3e-36 Score=246.37 Aligned_cols=212 Identities=31% Similarity=0.543 Sum_probs=181.0
Q ss_pred cCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCC
Q 019041 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (347)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~ 98 (347)
....+.+...|+++++++.+.+.+..+|+..|+++|.++++.+++++++++++|||+|||++++++++..+....
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~----- 80 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----- 80 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-----
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-----
Confidence 344567778899999999999999999999999999999999999999999999999999999999998875533
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEE
Q 019041 99 EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (347)
Q Consensus 99 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (347)
.+.++||++|+++|+.|+.+.+.++....++.+..+.|+.........+. .++|+|+||+++...+......+.+++++
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMF 159 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 26789999999999999999999998888888888888876655544433 38999999999999988877788899999
Q ss_pred EEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEec
Q 019041 179 VLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (347)
Q Consensus 179 IvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~ 236 (347)
|+||||++.+.++...+..++..+++..|++++|||++..+..+.+.++.+|..+.+.
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999899999999999998899999999999999999999999988776554
No 37
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-36 Score=247.22 Aligned_cols=207 Identities=36% Similarity=0.572 Sum_probs=182.6
Q ss_pred CccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEE
Q 019041 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (347)
|...|+++++++.+.+.++.+|+..|+++|.++++.+++++++++++|||+|||++|+++++..+.... .+.+++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-----~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER-----AEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS-----CSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc-----CCceEE
Confidence 345799999999999999999999999999999999999999999999999999999999998876532 267899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCC----CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEE
Q 019041 105 VLAPTRELAVQIQEEALKFGSRA----GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (347)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (347)
|++|+++|+.|+.+.+.++.... ++.+..+.|+.........+..+++|+|+||+++.+.+......+.+++++|+
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999887665 67888888887655554555567899999999999998887777889999999
Q ss_pred ecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEec
Q 019041 181 DEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (347)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~ 236 (347)
||||++.++++...+..++..+++..|++++|||++..+..+.+.++.+|..+...
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999998889999999999999999999999999876554
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=294.47 Aligned_cols=296 Identities=22% Similarity=0.287 Sum_probs=196.6
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHH-HHHHHHhccCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI-QEEALKFGSRA 127 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~-~~~~~~~~~~~ 127 (347)
.|+++|.++++.+++++++++.+|||+|||++++++++..+..... .+.+.++||++|+++|+.|| .+.+.+++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 7999999999999999999999999999999999999887765321 01136799999999999999 9999998665
Q ss_pred CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHH------hcCCCCCCcccEEEEecchhhhccC-ChHHHHHHHh
Q 019041 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML------EAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVT 200 (347)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~------~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~ 200 (347)
++++..++|+.........+...++|+|+||+.+...+ ......+.++++||+||||++.... +...+..++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 48889999988777666666667999999999999887 3444667889999999999875533 3333333332
Q ss_pred hc----C---------CCccEEEEEeecchh-----------HHHHHHHhc------------------CCCeEEEeccc
Q 019041 201 QI----R---------PDRQTLYWSATWPRE-----------VETLARQFL------------------RNPYKVIIGSL 238 (347)
Q Consensus 201 ~~----~---------~~~~~i~lsaT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~~ 238 (347)
.. . +..+++++|||+... +..+...+. ..|........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 21 1 567899999999862 111111111 11111111000
Q ss_pred cccccc-------------------ccceeE-------------------------------------------------
Q 019041 239 ELKANQ-------------------SINQVV------------------------------------------------- 250 (347)
Q Consensus 239 ~~~~~~-------------------~~~~~~------------------------------------------------- 250 (347)
...... .....-
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000000
Q ss_pred -------------------------EEecchhc---------------------cccHHHHHHHHHHHhh---cC-CCeE
Q 019041 251 -------------------------EVVTEAEK---------------------YNSMFICRLIKLLKEV---MD-GSRI 280 (347)
Q Consensus 251 -------------------------~~~~~~~~---------------------~~~~~~~~l~~~~~~~---~~-~~~~ 280 (347)
........ ........+.+++.+. .+ ++++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 00000000 0000000122222221 12 6899
Q ss_pred EEEecCcccHHHHHHHHhhC------CCCceeecCC--------CCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 281 LIFTETKKGCDQVTRQLRMD------GWPALSIHGD--------KNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 281 lvf~~~~~~~~~~~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
||||+++++++.+++.|.+. |+.+..+||+ ++..+|..+++.|++|+.+|||||+++++|||+|+|
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v 483 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKEC 483 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccC
Confidence 99999999999999999987 8999999999 999999999999999999999999999999999998
Q ss_pred C
Q 019041 347 C 347 (347)
Q Consensus 347 ~ 347 (347)
+
T Consensus 484 ~ 484 (699)
T 4gl2_A 484 N 484 (699)
T ss_dssp C
T ss_pred C
Confidence 5
No 39
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2e-36 Score=251.96 Aligned_cols=227 Identities=43% Similarity=0.681 Sum_probs=195.9
Q ss_pred ccceeeccCCCCC--CccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 12 RREITVEGHDVPR--PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 12 ~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
+....+.+.+.|. ++..|+++++++.+.++|..+|+..|+++|.++++.+++++++++++|||+|||++|+++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4455666777665 88899999999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCc----cCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHH
Q 019041 90 SAQPRL----VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML 165 (347)
Q Consensus 90 ~~~~~~----~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~ 165 (347)
...... ....++++||++|+++|+.|+.+.+.+++...++.+..+.|+.........+..+++|+|+||+++...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 654311 0112568999999999999999999999888888999999998887777777778999999999999999
Q ss_pred hcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc--CC--CccEEEEEeecchhHHHHHHHhcCCCeEEEeccc
Q 019041 166 EAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSL 238 (347)
Q Consensus 166 ~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~--~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~ 238 (347)
......+.+++++|+||||++.+.+|...+..++..+ +. ..|++++|||+++.+..+.+.++.+|..+.+...
T Consensus 166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 8887788899999999999999999999999998854 33 5789999999999999999999998887766543
No 40
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=249.21 Aligned_cols=207 Identities=44% Similarity=0.693 Sum_probs=186.5
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEE
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (347)
.+...|+++++++.+.+.++.+|+..|+++|.++++.+++++++++++|||+|||++|+++++..+..... +.++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~-----~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ-----RLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC-----SSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC-----CceE
Confidence 45677999999999999999999999999999999999999999999999999999999999988776432 5689
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhc-CCCCCCcccEEEEec
Q 019041 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYLVLDE 182 (347)
Q Consensus 104 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIvDE 182 (347)
||++|+++|+.|+.+.+.++....++.+..+.|+.........+..+++|+|+||+++.+.+.. ....+.+++++|+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999988888899999998877666666677899999999999988775 445678899999999
Q ss_pred chhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEe
Q 019041 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (347)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~ 235 (347)
||++.+.+|...+..++..+++..+++++|||++..+..+.+.++.+|..+.+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999888999999999999999999999999877654
No 41
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.7e-36 Score=245.88 Aligned_cols=210 Identities=30% Similarity=0.479 Sum_probs=178.4
Q ss_pred cCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCC
Q 019041 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (347)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~ 98 (347)
++..+.+...|+++++++.+.+.++.+||..|+++|.++++.+++++++++++|||+|||++|+++++..+....
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~----- 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN----- 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS-----
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-----
Confidence 455667788899999999999999999999999999999999999999999999999999999999988875432
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccE
Q 019041 99 EGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTY 177 (347)
Q Consensus 99 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (347)
.+.++||++|+++|+.|+.+.+.+++... ++++..+.|+.........+ .+++|+|+||+++...+......+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 26789999999999999999999987654 78888888887654443333 46899999999999998887777889999
Q ss_pred EEEecchhhhccC-ChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEE
Q 019041 178 LVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVI 234 (347)
Q Consensus 178 iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~ 234 (347)
+|+||||++.+++ |...+..++..+++..|++++|||++..+..+...++.+|..+.
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999999887 99999999999988899999999999999888888888887654
No 42
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.6e-35 Score=290.27 Aligned_cols=286 Identities=20% Similarity=0.230 Sum_probs=213.2
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHhhHhhhhc----CC--cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEE
Q 019041 32 ANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (347)
Q Consensus 32 ~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~----~~--~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (347)
++.++...+.+.. ++| .++++|.++++.+++ ++ ++++++|||+|||.+++.+++..+.. +.+++
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEE
Confidence 3456666666654 788 579999999998876 55 89999999999999988877766543 66899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh---hHhhcC-CCcEEEeChHHHHHHHhcCCCCCCcccEEEE
Q 019041 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (347)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (347)
|++|+++|+.|+.+.+.++....++++..+.+....... +..+.. ..+|+|+|++.+. ....+.+++++|+
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 999999999999999998777778888888776554332 222333 4899999997653 2456788999999
Q ss_pred ecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccc
Q 019041 181 DEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (347)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (347)
||+|+ ++......+..+....++++|||||.+.........+.++. .+.. ...........+.. ...
T Consensus 732 DEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~--~i~~-~~~~r~~i~~~~~~---~~~-- 798 (1151)
T 2eyq_A 732 DEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS--IIAT-PPARRLAVKTFVRE---YDS-- 798 (1151)
T ss_dssp ESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEE--ECCC-CCCBCBCEEEEEEE---CCH--
T ss_pred echHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCce--EEec-CCCCccccEEEEec---CCH--
Confidence 99999 45556666777767889999999987765544443333221 1111 11111111111111 111
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC--CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 019041 261 SMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 338 (347)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 338 (347)
.. ....++.....+++++|||+++++++.+++.|++. +..+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 799 ~~---i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e 875 (1151)
T 2eyq_A 799 MV---VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 875 (1151)
T ss_dssp HH---HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTG
T ss_pred HH---HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcce
Confidence 11 22334445556889999999999999999999886 78999999999999999999999999999999999999
Q ss_pred cCCCCCcCC
Q 019041 339 RGLGRITVC 347 (347)
Q Consensus 339 ~Gidip~v~ 347 (347)
+|+|+|+++
T Consensus 876 ~GiDip~v~ 884 (1151)
T 2eyq_A 876 TGIDIPTAN 884 (1151)
T ss_dssp GGSCCTTEE
T ss_pred eeecccCCc
Confidence 999999874
No 43
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=247.63 Aligned_cols=229 Identities=34% Similarity=0.574 Sum_probs=194.1
Q ss_pred HHHHhhhccceeeccCCCCCCccccccC----CCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 5 EVKMYRARREITVEGHDVPRPIRIFQEA----NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
++..++++.++.+++.+.|.|...|+++ ++++.+.+.+...|+..|+++|.++++.+++++++++.+|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4667888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh-HhhcCCCcEEEeChH
Q 019041 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI-RDLRRGVEIVIATPG 159 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~T~~ 159 (347)
|+++++..+.... ..+.+++|++|+++|+.|+.+.+.++....++.+..+.++....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQPA----NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSCC----SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhcc----cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 9999998876432 12668999999999999999999999888888887776654322221 122446899999999
Q ss_pred HHHHHHhcC--CCCCCcccEEEEecchhhhc---cCChHHHHHHHhhcC-CCccEEEEEeecchhHHHHHHHhcCCCeEE
Q 019041 160 RLIDMLEAQ--HTNLRRVTYLVLDEADRMLD---MGFEPQIRKIVTQIR-PDRQTLYWSATWPREVETLARQFLRNPYKV 233 (347)
Q Consensus 160 ~l~~~~~~~--~~~~~~~~~iIvDE~h~~~~---~~~~~~~~~~~~~~~-~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~ 233 (347)
++...+... ...+.+++++|+||||++.+ .++...+..++.... +..+++++|||++..+..+.+.++.+|..+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999988776 45678899999999999987 457778888876653 567999999999999999999999999887
Q ss_pred Eecc
Q 019041 234 IIGS 237 (347)
Q Consensus 234 ~~~~ 237 (347)
.+..
T Consensus 239 ~~~~ 242 (245)
T 3dkp_A 239 SIGA 242 (245)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7654
No 44
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7e-36 Score=288.80 Aligned_cols=283 Identities=17% Similarity=0.162 Sum_probs=212.9
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.++| .|+++|.++++.+.+++++++.+|||+|||+++++++...+.. +.+++|++|+++|+.|+.+.+.++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3566 6899999999999999999999999999999988887766543 678999999999999999999986
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcC
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (347)
.. ++.+..++|+..... .++|+|+||+.+...+......+.++++||+||||++.+++++..+..++..++
T Consensus 106 ~~--~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp C----CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred cC--CCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 43 667888888765332 479999999999998887777778999999999999999888888999999998
Q ss_pred CCccEEEEEeecchhHHHHHHHhc---CCCeEEEeccccccccccc----ceeEEEecchh-------------------
Q 019041 204 PDRQTLYWSATWPREVETLARQFL---RNPYKVIIGSLELKANQSI----NQVVEVVTEAE------------------- 257 (347)
Q Consensus 204 ~~~~~i~lsaT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------------------- 257 (347)
+..+++++|||++... .+..++. ..+..+........+.... ...........
T Consensus 177 ~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (997)
T 4a4z_A 177 QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESA 255 (997)
T ss_dssp TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----
T ss_pred cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccc
Confidence 8999999999986543 3333322 1222222211110000000 00000000000
Q ss_pred --------------------------------------------------------------ccccHHHHHHHHHHHhhc
Q 019041 258 --------------------------------------------------------------KYNSMFICRLIKLLKEVM 275 (347)
Q Consensus 258 --------------------------------------------------------------~~~~~~~~~l~~~~~~~~ 275 (347)
.........+...+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~- 334 (997)
T 4a4z_A 256 KGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR- 334 (997)
T ss_dssp -------------------------------------------------------------CCCCTTHHHHHHHHHHHT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-
Confidence 00111233455555543
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCC---------------------------------------CceeecCCCCHHHH
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMDGW---------------------------------------PALSIHGDKNQSER 316 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~~~---------------------------------------~~~~~~~~~~~~~r 316 (347)
...++||||++++.++.++..|.+.++ .+..+|+++++.+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 456999999999999999999987665 46889999999999
Q ss_pred HHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 317 DWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 317 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
..+++.|..|..+|||||+++++|+|+|++
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~ 444 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPTR 444 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCCS
T ss_pred HHHHHHHHCCCCcEEEEchHhhCCCCCCCc
Confidence 999999999999999999999999999985
No 45
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.1e-35 Score=236.75 Aligned_cols=204 Identities=41% Similarity=0.683 Sum_probs=180.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc
Q 019041 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (347)
Q Consensus 28 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 107 (347)
.|+++++++.+.+.++..|+..|+++|.++++.+++++++++++|||+|||++++++++..+..... ...+++++|++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 5999999999999999999999999999999999999999999999999999999999888764321 12367899999
Q ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhh
Q 019041 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (347)
Q Consensus 108 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (347)
|+++|+.|+.+.+.++... +++..++|+.........+..+++|+|+||+++...+......+.+++++|+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999998654 67788888887766666666679999999999999988877778899999999999999
Q ss_pred ccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEe
Q 019041 188 DMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (347)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~ 235 (347)
+.++...+..++...++..+++++|||++.....+.+.++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 988999999999998888999999999999999999999998876644
No 46
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-35 Score=241.48 Aligned_cols=212 Identities=27% Similarity=0.489 Sum_probs=176.9
Q ss_pred ccCCCCCCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccC
Q 019041 18 EGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQ 97 (347)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~ 97 (347)
.+.........|+++++++.+.+.+..+|+..|+++|.++++.+++++++++++|||+|||++++++++..+....
T Consensus 5 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~---- 80 (220)
T 1t6n_A 5 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT---- 80 (220)
T ss_dssp ---------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT----
T ss_pred CCCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC----
Confidence 3444555566799999999999999999999999999999999999999999999999999999999988865432
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 98 GEGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 98 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
++.++||++|+++|+.|+.+.+.++.... ++++..+.|+.........+. ..++|+|+||+++...+......+.++
T Consensus 81 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 81 -GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp -TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred -CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 25689999999999999999999987765 788888888876555444443 346999999999999988877778899
Q ss_pred cEEEEecchhhhc-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEE
Q 019041 176 TYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVI 234 (347)
Q Consensus 176 ~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~ 234 (347)
+++|+||||++.+ .++...+..++...++..|++++|||++.....+.+.++.+|..+.
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9999999999876 3677888888888888899999999999999999999999887653
No 47
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=6.9e-37 Score=280.18 Aligned_cols=281 Identities=15% Similarity=0.165 Sum_probs=199.8
Q ss_pred CCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 019041 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 127 (347)
..|+++|.++++.+++++++++++|||+|||++++.++...+... +.++||++|+++|+.||.+.+.+++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 389999999999999999999999999999999988887766542 4489999999999999999999987776
Q ss_pred CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCcc
Q 019041 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ 207 (347)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 207 (347)
+..+..++++...... ...+.+|+|+|++.+... ....+.++++||+||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 7788888888766543 345689999999976542 223467899999999999744 567777788877889
Q ss_pred EEEEEeecchhHHHHH--HHhcCCCeEEEeccccc-----ccccccceeEEEecch-------hcccc---------HHH
Q 019041 208 TLYWSATWPREVETLA--RQFLRNPYKVIIGSLEL-----KANQSINQVVEVVTEA-------EKYNS---------MFI 264 (347)
Q Consensus 208 ~i~lsaT~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~---------~~~ 264 (347)
++++||||++...... ..+++ +.......... ..+............. ..+.. ...
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 9999999966532211 11222 21111111100 0000000000000000 00000 011
Q ss_pred HHHHHHHHhh-cC-CCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEe-cccccCC
Q 019041 265 CRLIKLLKEV-MD-GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAARGL 341 (347)
Q Consensus 265 ~~l~~~~~~~-~~-~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gi 341 (347)
..+.+.+... .. +++++|||+ .++++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+||||| +++++|+
T Consensus 334 ~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~Gi 412 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGI 412 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccc
Confidence 1233333332 22 345566665 899999999999988899999999999999999999999999999999 9999999
Q ss_pred CCCcCC
Q 019041 342 GRITVC 347 (347)
Q Consensus 342 dip~v~ 347 (347)
|+|+++
T Consensus 413 Dip~v~ 418 (510)
T 2oca_A 413 SVKNLH 418 (510)
T ss_dssp CCCSEE
T ss_pred ccccCc
Confidence 999874
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.8e-36 Score=282.18 Aligned_cols=283 Identities=20% Similarity=0.262 Sum_probs=203.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhHhhhhcC------CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 35 PDYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
.+.+.+.+..++| .|+++|.++++.+.++ .++++++|||||||++++++++..+.. +.+++|++|
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaP 425 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVP 425 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECS
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeC
Confidence 3555666678999 9999999999998765 589999999999999999999988765 668999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh---hHhhcC-CCcEEEeChHHHHHHHhcCCCCCCcccEEEEecch
Q 019041 109 TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (347)
Q Consensus 109 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (347)
+++|+.|+.+.+.++....++++..++|+...... +..+.. .++|+|+|++.+.+ ...+.+++++|+||+|
T Consensus 426 tr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQH 500 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCC
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccc
Confidence 99999999999999888788999999998865543 223333 48999999987754 3457889999999999
Q ss_pred hhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHH
Q 019041 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFI 264 (347)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (347)
++... ....+.......++++||||+.+.... ....+......+.... ....... ........ .
T Consensus 501 r~g~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p-~~r~~i~---~~~~~~~~-----~ 564 (780)
T 1gm5_A 501 RFGVK-----QREALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMP-PGRKEVQ---TMLVPMDR-----V 564 (780)
T ss_dssp CC----------CCCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCC-SSCCCCE---ECCCCSST-----H
T ss_pred hhhHH-----HHHHHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccC-CCCcceE---EEEeccch-----H
Confidence 85221 122222233467999999998765333 2233433222222111 0011111 11111111 1
Q ss_pred HHHHHHHH-hhcCCCeEEEEecCcc--------cHHHHHHHHhh---CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEE
Q 019041 265 CRLIKLLK-EVMDGSRILIFTETKK--------GCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMT 332 (347)
Q Consensus 265 ~~l~~~~~-~~~~~~~~lvf~~~~~--------~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 332 (347)
..+.+.+. ....+++++|||+.++ .++.+++.|.+ .+..+..+||++++.+|..+++.|++|+.+|||
T Consensus 565 ~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILV 644 (780)
T 1gm5_A 565 NEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILV 644 (780)
T ss_dssp HHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCC
T ss_pred HHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 13333333 3446779999999764 46788888887 478999999999999999999999999999999
Q ss_pred EecccccCCCCCcCC
Q 019041 333 ATDVAARGLGRITVC 347 (347)
Q Consensus 333 ~T~~~~~Gidip~v~ 347 (347)
||+++++|+|+|+++
T Consensus 645 aT~vie~GIDiP~v~ 659 (780)
T 1gm5_A 645 STTVIEVGIDVPRAN 659 (780)
T ss_dssp CSSCCCSCSCCTTCC
T ss_pred ECCCCCccccCCCCC
Confidence 999999999999975
No 49
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=246.69 Aligned_cols=213 Identities=26% Similarity=0.413 Sum_probs=182.5
Q ss_pred eeccCCCCC---CccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 16 TVEGHDVPR---PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 16 ~~~~~~~~~---~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
++...+.+. +...|+++++++.+.++|..+||..|+++|.++++.++.+ +++++++|||||||++|+++++.++.
T Consensus 78 ~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~ 157 (300)
T 3fmo_B 78 EVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (300)
T ss_dssp EEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhh
Confidence 344444444 4567999999999999999999999999999999999987 99999999999999999999999876
Q ss_pred cCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhc-C
Q 019041 91 AQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-Q 168 (347)
Q Consensus 91 ~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~ 168 (347)
... .++++||++|+++|+.|+.+.+..++... ++.+....++....... ..+++|+|+||+++.+.+.. .
T Consensus 158 ~~~-----~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~ 229 (300)
T 3fmo_B 158 PAN-----KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLK 229 (300)
T ss_dssp TTS-----CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTC
T ss_pred ccC-----CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcC
Confidence 543 26689999999999999999999987754 67788887776544332 34679999999999999865 4
Q ss_pred CCCCCcccEEEEecchhhhc-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEec
Q 019041 169 HTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (347)
Q Consensus 169 ~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~ 236 (347)
...+.+++++|+||||++.+ .++...+..++..+++.+|++++|||++..+..+++.++.+|..+.+.
T Consensus 230 ~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 230 FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 56788999999999999987 678899999999998899999999999999999999999999877654
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.5e-35 Score=294.81 Aligned_cols=305 Identities=19% Similarity=0.236 Sum_probs=216.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHhhhh-cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCc---cCCCCCEEEEEcCc
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL---VQGEGPIVLVLAPT 109 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~~~lil~p~ 109 (347)
|+++....+. ||..|+++|.++++.++ .++|++++||||||||+++.++++..+.+.... ...++.+++|++|+
T Consensus 66 Lp~~~~~~f~--g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGFE--GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTCT--TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhcC--CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 6666554432 78999999999999866 478999999999999999999999988764321 12236789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC--CCCcccEEEEecchhhh
Q 019041 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--NLRRVTYLVLDEADRML 187 (347)
Q Consensus 110 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~iIvDE~h~~~ 187 (347)
++|+.|..+.+.+.....|+.+..++|+....... ..+++|+|+||+++...+..... .++.++++|+||+|.+.
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 99999999999887777899999999987654332 23589999999998666554332 35789999999999765
Q ss_pred ccCChHHHHHHHh-------hcCCCccEEEEEeecchhHHHHHHHhcCCCe-EEEecccccccccccceeEEEecchh--
Q 019041 188 DMGFEPQIRKIVT-------QIRPDRQTLYWSATWPREVETLARQFLRNPY-KVIIGSLELKANQSINQVVEVVTEAE-- 257 (347)
Q Consensus 188 ~~~~~~~~~~~~~-------~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 257 (347)
+ ..+..+..++. ..++..|++++|||++. .+++.+++...+. ..........+ ......+.......
T Consensus 221 d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RP-vpL~~~~~~~~~~~~~ 297 (1724)
T 4f92_B 221 D-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRP-VPLEQTYVGITEKKAI 297 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCS-SCEEEECCEECCCCHH
T ss_pred C-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCcc-CccEEEEeccCCcchh
Confidence 4 45555554443 34577899999999864 4455554433321 12222222111 11111111111111
Q ss_pred ccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhC-------------------------------------
Q 019041 258 KYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD------------------------------------- 300 (347)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~------------------------------------- 300 (347)
+........+...+.+...++++||||++++.++.+++.|.+.
T Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 377 (1724)
T 4f92_B 298 KRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLL 377 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHh
Confidence 1111122234445555556779999999999999998877531
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 301 GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 301 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
...++.+|+++++++|..+.+.|++|.++|||||+.++.|||+|..
T Consensus 378 ~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~ 423 (1724)
T 4f92_B 378 PYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAH 423 (1724)
T ss_dssp TTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBS
T ss_pred hcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCc
Confidence 2346788999999999999999999999999999999999999975
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-34 Score=291.23 Aligned_cols=311 Identities=15% Similarity=0.144 Sum_probs=225.4
Q ss_pred CCccccccC---CCCHHHHHHHHHCCCCCCcHHHHhhHhhhhc-CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCC
Q 019041 24 RPIRIFQEA---NFPDYCLEVIAKLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE 99 (347)
Q Consensus 24 ~~~~~~~~~---~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~ 99 (347)
++.-.++.+ .+.+...+.+...+|..++|.|.++++.+.. ++|++++||||||||+++.++++..+.+.+
T Consensus 898 t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~------ 971 (1724)
T 4f92_B 898 TELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS------ 971 (1724)
T ss_dssp CCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT------
T ss_pred CccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC------
Confidence 444444443 3556677778888899999999999999875 578999999999999999999999887643
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH-HhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCC--CCCccc
Q 019041 100 GPIVLVLAPTRELAVQIQEEAL-KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--NLRRVT 176 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~ 176 (347)
+.+++|++|+++|+.|..+.+. .++...++++..++|+....... ..+++|+|+||+++....++... .+++++
T Consensus 972 ~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~ 1048 (1724)
T 4f92_B 972 EGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNIN 1048 (1724)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCS
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceee
Confidence 5689999999999999998886 46777889999988876533222 23579999999998777655432 356899
Q ss_pred EEEEecchhhhccCChHHHHHHHhh-------cCCCccEEEEEeecchhHHHHHHHhcCCCeEEEeccccccccccccee
Q 019041 177 YLVLDEADRMLDMGFEPQIRKIVTQ-------IRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQV 249 (347)
Q Consensus 177 ~iIvDE~h~~~~~~~~~~~~~~~~~-------~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (347)
++|+||+|.+.+ ..+..+..++.. ..+..|++++|||++. ...+.+++...+...........+. .....
T Consensus 1049 lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPv-pL~~~ 1125 (1724)
T 4f92_B 1049 LFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPV-PLELH 1125 (1724)
T ss_dssp EEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSS-CEEEE
T ss_pred EEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCC-CeEEE
Confidence 999999998765 355555544433 3467899999999865 4556665544433332222222211 11222
Q ss_pred EEEecch--hccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh----------------------------
Q 019041 250 VEVVTEA--EKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM---------------------------- 299 (347)
Q Consensus 250 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~---------------------------- 299 (347)
+...... ..........+...+....+++++||||++++.++.++..|..
T Consensus 1126 i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d 1205 (1724)
T 4f92_B 1126 IQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSD 1205 (1724)
T ss_dssp EEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCC
T ss_pred EEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhccc
Confidence 2111111 1111112234555666777888999999999999988876632
Q ss_pred ------CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 300 ------DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 300 ------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
....+..+|+++++.+|..+.+.|++|.++|||||+.++.|+|+|..
T Consensus 1206 ~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~ 1258 (1724)
T 4f92_B 1206 STLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAH 1258 (1724)
T ss_dssp HHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBS
T ss_pred HHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCcc
Confidence 02347789999999999999999999999999999999999999975
No 52
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.2e-35 Score=242.35 Aligned_cols=203 Identities=36% Similarity=0.557 Sum_probs=176.3
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEE
Q 019041 28 IFQEAN--FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (347)
Q Consensus 28 ~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~li 105 (347)
.|+.++ +++.+.+.++.+||..|+++|.++++.++.++++++++|||+|||++|+++++..+....... ..+.+++|
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~-~~~~~~li 131 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP-RNGTGVLI 131 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCG-GGCCCEEE
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccc-cCCceEEE
Confidence 355555 999999999999999999999999999999999999999999999999999998887643211 12678999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCC-CCCCcccEEEEecch
Q 019041 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-TNLRRVTYLVLDEAD 184 (347)
Q Consensus 106 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIvDE~h 184 (347)
++|+++|+.|+.+.++++....+..+..+.|+.........+..+++|+|+||+++...+.... ..+.+++++|+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 9999999999999999998888888999999887776666666679999999999998876543 567889999999999
Q ss_pred hhhccCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCe
Q 019041 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPY 231 (347)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~ 231 (347)
++.+.+|...+..+++.+++.+|++++|||+++.+..+.+.++..+.
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999988999999999999999999998887654
No 53
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.1e-35 Score=289.95 Aligned_cols=272 Identities=21% Similarity=0.294 Sum_probs=201.6
Q ss_pred HHHH-HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH
Q 019041 40 EVIA-KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (347)
Q Consensus 40 ~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 118 (347)
+.+. .+||. | ++|.++++.+++|+++++++|||+|||+ ++++++..+... ++++||++|+++|+.|+.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHH
Confidence 3344 48998 9 9999999999999999999999999997 777877776542 6789999999999999999
Q ss_pred HHHHhccCCCc----eEEEEECCCCCchh---hHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC
Q 019041 119 EALKFGSRAGI----RSTCIYGGAPKGPQ---IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (347)
Q Consensus 119 ~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (347)
.+.+++...++ .+..++|+...... ...+.. ++|+|+||+++.+.+.. +++++++|+||||++.+ +
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--c
Confidence 99999888787 88999998877653 333444 89999999999987664 56899999999999887 5
Q ss_pred hHHHHHHHhhcC-----------CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccc
Q 019041 192 EPQIRKIVTQIR-----------PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (347)
Q Consensus 192 ~~~~~~~~~~~~-----------~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (347)
...+..++..+. ...|.+++|||++.. ..+...++..+..+.+.... .........+ . ...+..
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~--~-~~~k~~ 265 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVA--V-NDESIS 265 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEE--E-SCCCTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEE--e-chhHHH
Confidence 667777776652 457899999998776 42222222222222111111 1111111111 1 222222
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEE----ecc
Q 019041 261 SMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA----TDV 336 (347)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~----T~~ 336 (347)
.+.+++... ++++||||++++.++.+++.|++. +.+..+||++. .+++.|++|+.+|||| |++
T Consensus 266 -----~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv 332 (1054)
T 1gku_B 266 -----TLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGT 332 (1054)
T ss_dssp -----TTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC----
T ss_pred -----HHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCe
Confidence 344555543 578999999999999999999888 89999999873 6789999999999999 899
Q ss_pred cccCCCCCcC
Q 019041 337 AARGLGRITV 346 (347)
Q Consensus 337 ~~~Gidip~v 346 (347)
+++|+|+|+|
T Consensus 333 ~~rGIDip~V 342 (1054)
T 1gku_B 333 LVRGLDLPER 342 (1054)
T ss_dssp --CCSCCTTT
T ss_pred eEeccccCCc
Confidence 9999999995
No 54
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3e-33 Score=258.16 Aligned_cols=281 Identities=20% Similarity=0.250 Sum_probs=200.8
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.+|+ .|++.|..++..+++|+ +..++||+|||++|.+|++..... +..++|++||++||.|..+++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 5799 99999999999999998 999999999999999998854332 557999999999999999999999
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcC------CCCCCcccEEEEecchhhh-ccC-----
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRML-DMG----- 190 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~-~~~----- 190 (347)
....++.+..+.||.+.... ....+++|+|+||+.| .+++... ...+..+.++|+||||.++ +..
T Consensus 148 ~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplI 225 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLI 225 (844)
T ss_dssp HHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEE
T ss_pred HhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchh
Confidence 88899999999999764333 3334689999999999 5655433 2456789999999999987 442
Q ss_pred ----------ChHHHHHHHhhcCC---------CccEE-----------------EEEeecchh---HHHHH--HHhcC-
Q 019041 191 ----------FEPQIRKIVTQIRP---------DRQTL-----------------YWSATWPRE---VETLA--RQFLR- 228 (347)
Q Consensus 191 ----------~~~~~~~~~~~~~~---------~~~~i-----------------~lsaT~~~~---~~~~~--~~~~~- 228 (347)
+...+..++..+++ .+++. ++|||.+.. +.... ..++.
T Consensus 226 isg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~ 305 (844)
T 1tf5_A 226 ISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQK 305 (844)
T ss_dssp EEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCB
T ss_pred hcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhc
Confidence 45677778777752 56666 788886532 22221 11221
Q ss_pred CCeEEE-------ec-----------------------------ccccc-------------------------------
Q 019041 229 NPYKVI-------IG-----------------------------SLELK------------------------------- 241 (347)
Q Consensus 229 ~~~~~~-------~~-----------------------------~~~~~------------------------------- 241 (347)
+...+. +. .....
T Consensus 306 d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~ 385 (844)
T 1tf5_A 306 DVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFR 385 (844)
T ss_dssp TTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred CCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHH
Confidence 111110 00 00000
Q ss_pred -----------cccccc----eeEEEecchhccccHHHHHHHHHHHhh-cCCCeEEEEecCcccHHHHHHHHhhCCCCce
Q 019041 242 -----------ANQSIN----QVVEVVTEAEKYNSMFICRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPAL 305 (347)
Q Consensus 242 -----------~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~ 305 (347)
...... ..+.......+ ...+...+.+. ..+.++||||++++.++.+++.|++.|+++.
T Consensus 386 ~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K-----~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~ 460 (844)
T 1tf5_A 386 NIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGK-----FKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQ 460 (844)
T ss_dssp HHHCCCEEECCCSSCCCCEECCCEEESSHHHH-----HHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCE
T ss_pred HHhCCceEEecCCCCcccccCCcEEEeCHHHH-----HHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 000000 00111122222 22555555432 3567899999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 306 SIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 306 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
++||++++.++..+.+.|+.| .|+|||+++++|+|+|
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~ 497 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIK 497 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCC
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCcc
Confidence 999999888877666555554 7999999999999998
No 55
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.9e-34 Score=260.32 Aligned_cols=261 Identities=21% Similarity=0.189 Sum_probs=185.8
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.|+++|.++++.+++++++++++|||+|||++++.++... +.++||++|+++|+.||.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 7999999999999999999999999999999988877765 557999999999999999999885 6
Q ss_pred ce-EEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCcc
Q 019041 129 IR-STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ 207 (347)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 207 (347)
++ +..++|+... ..+|+|+|++.+....... ..++++||+||||++.+..+.. ++..+ +..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 66 7777776543 3689999999988765421 1458999999999998776653 34433 5678
Q ss_pred EEEEEeecchh-------------------HHHHHHHhcCCCeEEEe--ccccc--cc---------------------c
Q 019041 208 TLYWSATWPRE-------------------VETLARQFLRNPYKVII--GSLEL--KA---------------------N 243 (347)
Q Consensus 208 ~i~lsaT~~~~-------------------~~~~~~~~~~~~~~~~~--~~~~~--~~---------------------~ 243 (347)
++++||||.+. ...+...++..+....+ ..... .. .
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 99999999732 11221111211111000 00000 00 0
Q ss_pred cccceeEEEec-ch---------------hccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceee
Q 019041 244 QSINQVVEVVT-EA---------------EKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSI 307 (347)
Q Consensus 244 ~~~~~~~~~~~-~~---------------~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~ 307 (347)
......+.... .. ..........+.+++.. ..++++||||++.+.++.+++.|. +..+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~ 374 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAI 374 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBC
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----ccee
Confidence 00000000000 00 00011223455566655 467899999999999999999983 6679
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 308 HGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 308 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~ 414 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDAN 414 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBS
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCc
Confidence 9999999999999999999999999999999999999975
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.4e-33 Score=262.24 Aligned_cols=284 Identities=18% Similarity=0.181 Sum_probs=166.0
Q ss_pred CCcHHHHhhHhhhhc----C-CcEEEEcCCCCchhHHhHHHHHHhhhcC-CCccCCCCCEEEEEcCcHHHHHHHH-HHHH
Q 019041 49 EPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLSYLLPAFVHVSAQ-PRLVQGEGPIVLVLAPTRELAVQIQ-EEAL 121 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~----~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~~~~~~lil~p~~~l~~q~~-~~~~ 121 (347)
.|+++|.++++.+++ + +++++++|||+|||++++..+...+... .......++++|||+|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998775 4 6799999999999998665444443322 0001113678999999999999999 7777
Q ss_pred HhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHh----cCCCCCCcccEEEEecchhhhccCChHHHHH
Q 019041 122 KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLE----AQHTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (347)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~----~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (347)
.++. .+..+.++. ...+.+|+|+|++++..... ...+....+++||+||||++.... ...+..
T Consensus 258 ~~~~----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFGD----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcch----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 6643 233333221 22357999999999987653 223345678999999999986532 234556
Q ss_pred HHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccc-eeEEEe-----------------------
Q 019041 198 IVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSIN-QVVEVV----------------------- 253 (347)
Q Consensus 198 ~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------------- 253 (347)
++..+. ..+++++||||.+........+++.+................. ......
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 666663 5679999999876543333444444332211100000000000 000000
Q ss_pred ------cch------hccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCC--------CceeecCCCCH
Q 019041 254 ------TEA------EKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGW--------PALSIHGDKNQ 313 (347)
Q Consensus 254 ------~~~------~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~~ 313 (347)
... ..........+.+.+.....++++||||+++++|+.+++.|.+.+. .+..+||.+++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 000 0011112233444455555678999999999999999999976543 26678888764
Q ss_pred HHHHHHHHHHhcCCCC---EEEEecccccCCCCCcCC
Q 019041 314 SERDWVLAEFRSGRSP---IMTATDVAARGLGRITVC 347 (347)
Q Consensus 314 ~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidip~v~ 347 (347)
+|..++++|++|+.+ ||+||+++++|+|+|+|+
T Consensus 484 -~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~ 519 (590)
T 3h1t_A 484 -IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCK 519 (590)
T ss_dssp -HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEE
T ss_pred -HHHHHHHHHhCCCCCCCEEEEECChhhcCccchhee
Confidence 699999999998766 888999999999999874
No 57
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.5e-31 Score=246.28 Aligned_cols=282 Identities=22% Similarity=0.250 Sum_probs=184.1
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.+|. .|++.|..++..++.|+ +..++||+|||++|++|++..... +..++|++||++||.|..+++..+
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHH
Confidence 3575 89999999999999998 999999999999999998865433 557999999999999999999999
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcCC------CCCCcccEEEEecchhhh-ccC-----
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRML-DMG----- 190 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~-~~~----- 190 (347)
....++.+..+.||.+.. .+....+++|+|+||+.| ++++.... ..+.++.++|+||||.++ +.+
T Consensus 139 ~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 998999999999997643 333344689999999999 67765442 456789999999999987 332
Q ss_pred ----------ChHHHHHHHhhcCC--------------------CccEE------------------------EEEeecc
Q 019041 191 ----------FEPQIRKIVTQIRP--------------------DRQTL------------------------YWSATWP 216 (347)
Q Consensus 191 ----------~~~~~~~~~~~~~~--------------------~~~~i------------------------~lsaT~~ 216 (347)
+...+..++..+++ .+++. ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 34455566655542 33433 6788754
Q ss_pred hhHHHH---H--HHhcC---------------------------------CC----eEEEeccccccc------------
Q 019041 217 REVETL---A--RQFLR---------------------------------NP----YKVIIGSLELKA------------ 242 (347)
Q Consensus 217 ~~~~~~---~--~~~~~---------------------------------~~----~~~~~~~~~~~~------------ 242 (347)
...... . ..++. .+ ..+.+.......
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 211111 0 00000 00 011111100000
Q ss_pred ------------------------------cccc----ceeEEEecchhccccHHHHHHHHHHHhh-cCCCeEEEEecCc
Q 019041 243 ------------------------------NQSI----NQVVEVVTEAEKYNSMFICRLIKLLKEV-MDGSRILIFTETK 287 (347)
Q Consensus 243 ------------------------------~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~lvf~~~~ 287 (347)
.... ...+.......+ ...+...+... ..+.++||||+++
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K-----~~al~~~i~~~~~~gqpvLVft~si 451 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEK-----IQAIIEDIKERTAKGQPVLVGTISI 451 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHH-----HHHHHHHHHHHHTTTCCEEEEESSH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHH-----HHHHHHHHHHHhcCCCCEEEEECcH
Confidence 0000 000111222222 23566656543 4567899999999
Q ss_pred ccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 288 KGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 288 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
+.++.+++.|++.|++..++|++.++.++..+.+.|+.| .|+|||+++++|+||+.
T Consensus 452 e~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l 507 (853)
T 2fsf_A 452 EKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVL 507 (853)
T ss_dssp HHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCT
T ss_pred HHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccC
Confidence 999999999999999999999999888888888888887 79999999999999986
No 58
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.6e-31 Score=242.85 Aligned_cols=283 Identities=19% Similarity=0.256 Sum_probs=205.3
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.+|+ .|++.|..++..++.|+ +..++||+|||++|.+|++..... +..++|++||++||.|..+++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4788 99999999999999997 999999999999999998754433 456999999999999999999999
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcC------CCCCCcccEEEEecchhhhc-c------
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRMLD-M------ 189 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~~-~------ 189 (347)
....++.+..+.||.+.... ....+++|+|+||..| ++++... ...+..+.++|+||||.++. .
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 89999999999998764333 2333589999999999 6666543 34567899999999998873 2
Q ss_pred ---------CChHHHHHHHhhcC---------CCccEE-----------------EEEeecchh---HHHHH--HHhcCC
Q 019041 190 ---------GFEPQIRKIVTQIR---------PDRQTL-----------------YWSATWPRE---VETLA--RQFLRN 229 (347)
Q Consensus 190 ---------~~~~~~~~~~~~~~---------~~~~~i-----------------~lsaT~~~~---~~~~~--~~~~~~ 229 (347)
++...+..++..++ +.+++. ++|||.+.. +.... ..++..
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 25677888888886 567777 788886542 22211 112211
Q ss_pred --------CeEEEeccc-----------------------------ccc-------------------------------
Q 019041 230 --------PYKVIIGSL-----------------------------ELK------------------------------- 241 (347)
Q Consensus 230 --------~~~~~~~~~-----------------------------~~~------------------------------- 241 (347)
...+.+... ...
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 111111100 000
Q ss_pred -----------ccccc----ceeEEEecchhccccHHHHHHHHHHHh-hcCCCeEEEEecCcccHHHHHHHHhhCCCCce
Q 019041 242 -----------ANQSI----NQVVEVVTEAEKYNSMFICRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWPAL 305 (347)
Q Consensus 242 -----------~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~ 305 (347)
..... ...........+ ...+...+.+ ...+.++||||++++.++.+++.|++.|++..
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K-----~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~ 488 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAK-----YIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHN 488 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHH-----HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHH-----HHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 00000 000111122222 2245555543 34567899999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 306 SIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 306 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
++|++..+.++..+.+.|+.| .|+|||+++++|+||+.+
T Consensus 489 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 527 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLG 527 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTT
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCC
Confidence 999998877777777777777 799999999999999964
No 59
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.98 E-value=7.1e-31 Score=248.08 Aligned_cols=301 Identities=17% Similarity=0.232 Sum_probs=202.6
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhc-CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCE
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 102 (347)
.+..+|+.+++++.+.+.+...+ ..|.+.|++++..++. +++++++||||+|||+ +++++....... .+.+.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~---~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP---HLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG---GGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc---cCCCce
Confidence 35667999999999999999988 6788888888876654 5789999999999998 333332111110 012567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhc-cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEe
Q 019041 103 VLVLAPTRELAVQIQEEALKFG-SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLD 181 (347)
Q Consensus 103 ~lil~p~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvD 181 (347)
+++++|+++++.|+.+.+.+.. ...+..+....... . ......+|+++|++.+.+.+... ..+.++++||+|
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~---~---~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE---N---KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE---E---ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceeccc---c---ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 9999999999999988776532 22232222211110 0 11235789999999999877654 347889999999
Q ss_pred cchh-hhccCC-hHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhcc
Q 019041 182 EADR-MLDMGF-EPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY 259 (347)
Q Consensus 182 E~h~-~~~~~~-~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (347)
|+|. ..+... ...+..+.. ..+..+++++|||+... .+ ..++.....+.+.... ..+...+.. ......
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~-~~~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~----~pv~~~~~~-~~~~~~ 286 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVK-RRPDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT----YPVELYYTP-EFQRDY 286 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHH-HCTTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC----CCEEEECCS-SCCSCH
T ss_pred CccccccchHHHHHHHHHHHH-hCCCceEEEEeccccHH--HH-HHHhcCCCcccccCcc----cceEEEEec-CCchhH
Confidence 9995 433222 233334433 34678999999998642 33 4455544433332211 111111111 111111
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh-----------CCCCceeecCCCCHHHHHHHHHHHh----
Q 019041 260 NSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM-----------DGWPALSIHGDKNQSERDWVLAEFR---- 324 (347)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~---- 324 (347)
.......+...... ..++++||||+++++++.+++.|.+ .++.+..+||++++++|..+++.|.
T Consensus 287 ~~~~l~~l~~~~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~ 365 (773)
T 2xau_A 287 LDSAIRTVLQIHAT-EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365 (773)
T ss_dssp HHHHHHHHHHHHHH-SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSS
T ss_pred HHHHHHHHHHHHHh-cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccC
Confidence 11122223333222 3578999999999999999999975 5778999999999999999999999
Q ss_pred -cCCCCEEEEecccccCCCCCcCC
Q 019041 325 -SGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 325 -~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+|..+|||||+++++|||+|+|+
T Consensus 366 ~~g~~kVlVAT~iae~GidIp~v~ 389 (773)
T 2xau_A 366 GRPGRKVVISTNIAETSLTIDGIV 389 (773)
T ss_dssp SSCCEEEEEECTHHHHTCCCTTEE
T ss_pred CCCceEEEEeCcHHHhCcCcCCeE
Confidence 99999999999999999999874
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=4.9e-32 Score=242.95 Aligned_cols=250 Identities=16% Similarity=0.119 Sum_probs=174.3
Q ss_pred CCCCCcHHHHhhHhhhhcCCcE-EEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 46 GFVEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~~~~~~-lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
|+.++++.|+ +++.+++++++ ++++|||||||++++++++..+... +.+++|++|+++|+.|+.+.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcC--
Confidence 6788999985 78888888776 9999999999999899988766542 56899999999999999988752
Q ss_pred cCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHH-hhcC
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIV-TQIR 203 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~-~~~~ 203 (347)
..+......... ....+..+.++|++.+...+... ..+.+++++|+||||++ +..+......+. ....
T Consensus 71 ----~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 71 ----LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp ----SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred ----ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 222221111111 11224578899999988776544 44678999999999976 222222222222 2234
Q ss_pred CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEE
Q 019041 204 PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIF 283 (347)
Q Consensus 204 ~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf 283 (347)
+..+++++|||++..... .+...+..+..... .. ..... .+...+.+ .++++|||
T Consensus 140 ~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~-~p--------------~~~~~-----~~~~~l~~--~~~~~lVF 194 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDP---FPQSNSPIEDIERE-IP--------------ERSWN-----TGFDWITD--YQGKTVWF 194 (451)
T ss_dssp TSCEEEEECSSCTTCCCS---SCCCSSCEEEEECC-CC--------------SSCCS-----SSCHHHHH--CCSCEEEE
T ss_pred CCceEEEEccCCCccchh---hhcCCCceEecCcc-CC--------------chhhH-----HHHHHHHh--CCCCEEEE
Confidence 578999999998763221 12222222222100 00 00000 01122222 35799999
Q ss_pred ecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 284 TETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 284 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
|+++++++.+++.|++.|+.+..+|+++. ..+++.|++|+.+|||||+++++|+|+|+
T Consensus 195 ~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~ 252 (451)
T 2jlq_A 195 VPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA 252 (451)
T ss_dssp CSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC
T ss_pred cCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC
Confidence 99999999999999999999999999754 57899999999999999999999999996
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=4.7e-32 Score=250.08 Aligned_cols=264 Identities=17% Similarity=0.134 Sum_probs=182.5
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH
Q 019041 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (347)
Q Consensus 32 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~ 111 (347)
+++++.+.+.+... ...+.|.|+.+++.+++++++++++|||||||++|+++++..+... +.++||++|+++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHH
Confidence 34555444444332 3677888888899999999999999999999999999998887652 568999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC
Q 019041 112 LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (347)
Q Consensus 112 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (347)
|+.|+.+.+.. ..+. ....... .....+..+.+.|.+.+...+... ..+.++++||+||||++ +.++
T Consensus 227 La~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 99999988763 2222 1111100 001123457778888877655543 34788999999999987 4445
Q ss_pred hHHHHHHHhhcC-CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHH
Q 019041 192 EPQIRKIVTQIR-PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKL 270 (347)
Q Consensus 192 ~~~~~~~~~~~~-~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (347)
...+..+...+. +..|++++|||++.....+.. .++..+.+... . ...... .+...
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-~--------------~~~~~~-----~ll~~ 350 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-I--------------PERSWN-----TGFDW 350 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-C--------------CSSCCS-----SSCHH
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-C--------------CHHHHH-----HHHHH
Confidence 556666665553 678999999999765332111 12222111110 0 001111 12222
Q ss_pred HHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcC
Q 019041 271 LKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITV 346 (347)
Q Consensus 271 ~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 346 (347)
+.+ .++++||||+++++++.+++.|++.+..+..+|++ +|.++++.|++|+.+|||||+++++|+|+| +
T Consensus 351 l~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v 419 (618)
T 2whx_A 351 ITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-A 419 (618)
T ss_dssp HHH--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-C
T ss_pred HHh--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-c
Confidence 333 36799999999999999999999999999999984 678899999999999999999999999997 5
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=1.2e-30 Score=232.40 Aligned_cols=233 Identities=17% Similarity=0.158 Sum_probs=157.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCch
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
+++++++++|||+|||++|+++++..+... +.+++|++|+++|+.|+.+.+. ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 368999999999999999988888655442 5689999999999999888775 3344444443211
Q ss_pred hhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc-CCCccEEEEEeecchhHHH
Q 019041 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVET 221 (347)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lsaT~~~~~~~ 221 (347)
....+..+.+.|.+.+...+.. ...+.+++++|+||+|++ ...+......+.... ++..+++++|||+++....
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 0111245667788877766555 445788999999999986 221222233333222 4678999999999763211
Q ss_pred HHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCC
Q 019041 222 LARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG 301 (347)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~ 301 (347)
+... ..+. .. ........... .+.+.+.+ .++++||||+++++++.+++.|++.+
T Consensus 141 ~~~~--~~~i-~~---------------~~~~~~~~~~~-----~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~ 195 (431)
T 2v6i_A 141 FPPS--NSPI-ID---------------EETRIPDKAWN-----SGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAG 195 (431)
T ss_dssp SCCC--SSCC-EE---------------EECCCCSSCCS-----SCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTT
T ss_pred hcCC--CCce-ee---------------ccccCCHHHHH-----HHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 1000 0000 00 00000111111 12233333 36799999999999999999999999
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 302 WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 302 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
..+..+||+ +|..+++.|++|+.+|||||+++++|+|+|
T Consensus 196 ~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip 234 (431)
T 2v6i_A 196 KKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK 234 (431)
T ss_dssp CCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC
T ss_pred CeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC
Confidence 999999997 577899999999999999999999999999
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=1.1e-30 Score=238.97 Aligned_cols=240 Identities=20% Similarity=0.157 Sum_probs=174.2
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.++.+|..++..+.++++++++||||+|||.++.+++++. +.+++|++|+++|+.|+.+.+.+. .+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~---~g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKA---HG 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHH---HS
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHH---hC
Confidence 6677888888888889999999999999999888877763 568999999999999999877654 23
Q ss_pred ceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCcc-
Q 019041 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ- 207 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~- 207 (347)
..+....++.. ...+.+|+|+||++|+ ......+++++++|+||+|.+ +.++...+..+++.++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCc
Confidence 44455555532 2346899999999973 455666788999999999854 44566677778887766555
Q ss_pred -EEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecC
Q 019041 208 -TLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTET 286 (347)
Q Consensus 208 -~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~ 286 (347)
++++|||++.... ...+....+... ......... .... .+...++++||||++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~-------~~~~i~~~~--~~~~-----------l~~~~~~~vLVFv~T 405 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALS-------NTGEIPFYG--KAIP-----------IEAIRGGRHLIFCHS 405 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECB-------SCSSEEETT--EEEC-----------GGGSSSSEEEEECSC
T ss_pred eEEEECCCCCcccc------cCCcceEEEeec-------ccchhHHHH--hhhh-----------hhhccCCcEEEEeCC
Confidence 7888999876311 111111111000 000011110 0000 112257899999999
Q ss_pred cccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 287 KKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 287 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
++.++.+++.|++.|+.+..+||++++++ |..+..+|||||+++++|||+| |+
T Consensus 406 r~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 406 KKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred HHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 99999999999999999999999999764 4556679999999999999987 63
No 64
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=2.8e-31 Score=246.42 Aligned_cols=257 Identities=16% Similarity=0.193 Sum_probs=171.7
Q ss_pred HHHHCCCC-----CCcHHHH-----hhHhhhh------cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEE
Q 019041 41 VIAKLGFV-----EPTPIQA-----QGWPMAL------KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (347)
Q Consensus 41 ~l~~~~~~-----~~~~~Q~-----~~i~~~~------~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (347)
++...||. .|++.|+ .+++.++ +++++++++|||||||++|+++++..+... +.+++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~l 274 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTA 274 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEE
Confidence 44555666 8999999 8998877 899999999999999999999988876552 56899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecch
Q 019041 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (347)
Q Consensus 105 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (347)
|++|+++|+.|+.+.+..+ ++. ...+.... ....+.-+-+.+...+...+... ..+.+++++|+||+|
T Consensus 275 ilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 275 VLAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAH 342 (673)
T ss_dssp EEESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTT
T ss_pred EEccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCc
Confidence 9999999999999888754 221 11110000 00011234445555555544443 457889999999999
Q ss_pred hhhccCChHHHHHHHhhc-CCCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHH
Q 019041 185 RMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMF 263 (347)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (347)
++ ...+...+..+.... ....++++||||++..+..+... ..+. ..+. ..... ....
T Consensus 343 ~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i-~~v~--------------~~~~~-~~~~--- 400 (673)
T 2wv9_A 343 FT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV-HDVS--------------SEIPD-RAWS--- 400 (673)
T ss_dssp CC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE-EEEE--------------CCCCS-SCCS---
T ss_pred cc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce-EEEe--------------eecCH-HHHH---
Confidence 87 111112222233333 25789999999997542211110 0010 0000 00001 1111
Q ss_pred HHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCC
Q 019041 264 ICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGR 343 (347)
Q Consensus 264 ~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 343 (347)
.++..+.+ .++++||||+++++++.+++.|++.++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+
T Consensus 401 --~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDi 472 (673)
T 2wv9_A 401 --SGFEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANF 472 (673)
T ss_dssp --SCCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCC
T ss_pred --HHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceee
Confidence 11222222 47899999999999999999999999999999993 78889999999999999999999999999
Q ss_pred CcCC
Q 019041 344 ITVC 347 (347)
Q Consensus 344 p~v~ 347 (347)
| ++
T Consensus 473 p-v~ 475 (673)
T 2wv9_A 473 G-AS 475 (673)
T ss_dssp C-CS
T ss_pred C-Cc
Confidence 9 63
No 65
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=7.2e-32 Score=240.78 Aligned_cols=237 Identities=17% Similarity=0.170 Sum_probs=147.6
Q ss_pred hhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCC
Q 019041 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAP 139 (347)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~ 139 (347)
.+++++++++++|||||||++|+++++..+... +.+++|++|+++|+.|+.+.+..+ ++ ....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~----~v--~~~~~~~~ 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL----DV--KFHTQAFS 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS----CE--EEESSCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcC----Ce--EEecccce
Confidence 467899999999999999999988888876652 568999999999999999888743 22 21111100
Q ss_pred CchhhHhhcCC-CcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc-CCCccEEEEEeecch
Q 019041 140 KGPQIRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPR 217 (347)
Q Consensus 140 ~~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lsaT~~~ 217 (347)
. .... .-+-..+...+...+. ....+.+++++|+||+|++ +..+...+..+.... ....++++||||+++
T Consensus 71 ~------v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~ 142 (440)
T 1yks_A 71 A------HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPG 142 (440)
T ss_dssp C------CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred e------ccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCc
Confidence 0 0000 1122223333333222 2344688999999999987 222222222222222 357899999999876
Q ss_pred hHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHH
Q 019041 218 EVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQL 297 (347)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L 297 (347)
....+... ..+.. ... ....... .. .+...+.+ .++++||||++++.++.+++.|
T Consensus 143 ~~~~~~~~--~~~~~-~~~--------------~~~~~~~-~~-----~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L 197 (440)
T 1yks_A 143 TSDEFPHS--NGEIE-DVQ--------------TDIPSEP-WN-----TGHDWILA--DKRPTAWFLPSIRAANVMAASL 197 (440)
T ss_dssp CCCSSCCC--SSCEE-EEE--------------CCCCSSC-CS-----SSCHHHHH--CCSCEEEECSCHHHHHHHHHHH
T ss_pred hhhhhhhc--CCCee-Eee--------------eccChHH-HH-----HHHHHHHh--cCCCEEEEeCCHHHHHHHHHHH
Confidence 53211110 00100 000 0001111 11 11222222 3679999999999999999999
Q ss_pred hhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 298 RMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
++.++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| ++
T Consensus 198 ~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~ 242 (440)
T 1yks_A 198 RKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VE 242 (440)
T ss_dssp HHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CS
T ss_pred HHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ce
Confidence 999999999999 3578899999999999999999999999999 63
No 66
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=1.1e-29 Score=246.19 Aligned_cols=289 Identities=16% Similarity=0.059 Sum_probs=185.8
Q ss_pred CCCcHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 48 VEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
..|+|||.+++..+... .+++++++||+|||++++..+...+.... ..++|||||+ +|+.||.+++.++.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~------~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA------AERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS------CCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC------CCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999987764 58999999999999988776666554422 4579999999 99999999997643
Q ss_pred CCCceEEEEECCCCCchhh--HhhcCCCcEEEeChHHHHHHHhc-CCCCCCcccEEEEecchhhhccCCh--HHHHHHHh
Q 019041 126 RAGIRSTCIYGGAPKGPQI--RDLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYLVLDEADRMLDMGFE--PQIRKIVT 200 (347)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIvDE~h~~~~~~~~--~~~~~~~~ 200 (347)
++.+..++++....... .......+|+|+|++.+...... ..+...++++||+||||++.+.... ..+..+..
T Consensus 224 --~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~ 301 (968)
T 3dmq_A 224 --NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQ 301 (968)
T ss_dssp --CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHH
T ss_pred --CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHH
Confidence 45555554433111100 11223579999999988642111 1122347899999999998765422 22222322
Q ss_pred hcCCCccEEEEEeecchh----HHHHHHHhcCCCe---------------------------------------------
Q 019041 201 QIRPDRQTLYWSATWPRE----VETLARQFLRNPY--------------------------------------------- 231 (347)
Q Consensus 201 ~~~~~~~~i~lsaT~~~~----~~~~~~~~~~~~~--------------------------------------------- 231 (347)
......+++++||||... .............
T Consensus 302 L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 302 LAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp HHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred HhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 223456799999998531 1111110000000
Q ss_pred -----------------------------------EEEecccccccccccceeEEEecc---------------------
Q 019041 232 -----------------------------------KVIIGSLELKANQSINQVVEVVTE--------------------- 255 (347)
Q Consensus 232 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 255 (347)
.+......................
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 000000000000000000000000
Q ss_pred ---------------------hhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhh-CCCCceeecCCCCH
Q 019041 256 ---------------------AEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM-DGWPALSIHGDKNQ 313 (347)
Q Consensus 256 ---------------------~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~ 313 (347)
...........+.+++.. ..++++||||+++++++.+++.|.+ .|+++..+||+++.
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~ 540 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI 540 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 001112234456666655 4678999999999999999999984 69999999999999
Q ss_pred HHHHHHHHHHhcCC--CCEEEEecccccCCCCCcCC
Q 019041 314 SERDWVLAEFRSGR--SPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 314 ~~r~~~~~~f~~g~--~~vlv~T~~~~~Gidip~v~ 347 (347)
.+|..+++.|++|+ .+|||||+++++|+|+|+++
T Consensus 541 ~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~ 576 (968)
T 3dmq_A 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFAS 576 (968)
T ss_dssp THHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCC
T ss_pred HHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCc
Confidence 99999999999998 99999999999999999875
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=6.4e-29 Score=226.86 Aligned_cols=279 Identities=19% Similarity=0.227 Sum_probs=181.8
Q ss_pred CCCcHHHHhhHhhh----hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 48 VEPTPIQAQGWPMA----LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~----~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..|+|||.+++..+ ..++++++.++||+|||++++..+....... ...++||+|| ..|+.||.+++.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~------~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN------ELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT------CCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC------CCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 37999999999876 3578999999999999998665444433221 2467999999 56889999999998
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcC
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (347)
.. +.++..++++... .....++|+|+|++++..... .....+++||+||||++.+.. ......+..+
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l- 175 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL- 175 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS-
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh-
Confidence 65 4455556555422 112347999999999865433 223468999999999987643 2234444444
Q ss_pred CCccEEEEEeecchh-HHHH------------------------------------HHHhcCCCeEEEecccc----ccc
Q 019041 204 PDRQTLYWSATWPRE-VETL------------------------------------ARQFLRNPYKVIIGSLE----LKA 242 (347)
Q Consensus 204 ~~~~~i~lsaT~~~~-~~~~------------------------------------~~~~~~~~~~~~~~~~~----~~~ 242 (347)
+..+++++||||... ..++ ....+ .+..+.....+ ...
T Consensus 176 ~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 176 KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDL 254 (500)
T ss_dssp CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTS
T ss_pred ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcC
Confidence 456789999998542 1111 11111 11111111100 000
Q ss_pred ccccceeEEEe-cc-hh-------------------------------------------------ccccHHHHHHHHHH
Q 019041 243 NQSINQVVEVV-TE-AE-------------------------------------------------KYNSMFICRLIKLL 271 (347)
Q Consensus 243 ~~~~~~~~~~~-~~-~~-------------------------------------------------~~~~~~~~~l~~~~ 271 (347)
+......+... .. .. .........+.+++
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 00000000000 00 00 00012222344444
Q ss_pred Hhh-cCCCeEEEEecCcccHHHHHHHHhhC-CCCceeecCCCCHHHHHHHHHHHhcC-CCC-EEEEecccccCCCCCcCC
Q 019041 272 KEV-MDGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSG-RSP-IMTATDVAARGLGRITVC 347 (347)
Q Consensus 272 ~~~-~~~~~~lvf~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~T~~~~~Gidip~v~ 347 (347)
.+. ..+.++||||++...+..+++.|.+. |+.+..+||+++..+|..+++.|++| +.+ +|++|+++++|+|+|+++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 443 35779999999999999999999875 99999999999999999999999998 455 899999999999999874
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=3.4e-29 Score=241.08 Aligned_cols=283 Identities=11% Similarity=0.091 Sum_probs=176.3
Q ss_pred CCcHHHHhhHhhhhc--------------CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHH
Q 019041 49 EPTPIQAQGWPMALK--------------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~--------------~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 114 (347)
.||++|.++++.+++ +++++++++||||||+++ ++++..+...+ ...++|||||+++|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~-----~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD-----FIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT-----TCCEEEEEECGGGCCH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC-----CCceEEEEeCcHHHHH
Confidence 599999999998765 368999999999999987 44555444321 2468999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEECCCCCchhhHhh-cCCCcEEEeChHHHHHHHhcCC--CCCCcccEEEEecchhhhccCC
Q 019041 115 QIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDL-RRGVEIVIATPGRLIDMLEAQH--TNLRRVTYLVLDEADRMLDMGF 191 (347)
Q Consensus 115 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~iIvDE~h~~~~~~~ 191 (347)
||.+.+..+.... +.++.+.......+ ..+.+|+|+|++++...+.... ..+..+.+||+||||++..
T Consensus 345 Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--- 415 (1038)
T 2w00_A 345 QTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--- 415 (1038)
T ss_dssp HHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---
T ss_pred HHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---
Confidence 9999999875431 12333333333333 2468999999999998765432 1345688999999999753
Q ss_pred hHHHHHHHhhcCCCccEEEEEeecchhHH----HHHHHhcCCCeEEEecccccccccccceeEEEe-----------c-c
Q 019041 192 EPQIRKIVTQIRPDRQTLYWSATWPREVE----TLARQFLRNPYKVIIGSLELKANQSINQVVEVV-----------T-E 255 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~lsaT~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~ 255 (347)
...+..+...+ +..+.++|||||.+... .....+++.+...................+... . .
T Consensus 416 ~~~~~~I~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 416 GEAQKNLKKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp HHHHHHHHHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCC
T ss_pred hHHHHHHHHhC-CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccccc
Confidence 23345555555 45789999999975321 112222333221110000000000000000000 0 0
Q ss_pred ---hh------c-ccc----HHHHHHHHHHHhh-------cCCCeEEEEecCcccHHHHHHHHhhCC------------C
Q 019041 256 ---AE------K-YNS----MFICRLIKLLKEV-------MDGSRILIFTETKKGCDQVTRQLRMDG------------W 302 (347)
Q Consensus 256 ---~~------~-~~~----~~~~~l~~~~~~~-------~~~~~~lvf~~~~~~~~~~~~~L~~~~------------~ 302 (347)
.. . ... .++..+++..... ..+.++||||+++++|..+++.|.+.+ .
T Consensus 495 ~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~ 574 (1038)
T 2w00_A 495 EKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPL 574 (1038)
T ss_dssp HHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccC
Confidence 00 0 001 1111222222211 134589999999999999999997643 4
Q ss_pred Cc-eeecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCCEEE
Q 019041 303 PA-LSIHGD----------K----------NQ-----------------------------SERDWVLAEFRSGRSPIMT 332 (347)
Q Consensus 303 ~~-~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vlv 332 (347)
++ .++|+. + ++ ..|..++++|++|+++|||
T Consensus 575 k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILI 654 (1038)
T 2w00_A 575 RIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLI 654 (1038)
T ss_dssp CEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEE
T ss_pred cEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 44 345542 1 21 1377889999999999999
Q ss_pred EecccccCCCCCcCC
Q 019041 333 ATDVAARGLGRITVC 347 (347)
Q Consensus 333 ~T~~~~~Gidip~v~ 347 (347)
+|+++.+|+|+|.++
T Consensus 655 vvd~lltGfDiP~l~ 669 (1038)
T 2w00_A 655 VVGMFLTGFDAPTLN 669 (1038)
T ss_dssp ESSTTSSSCCCTTEE
T ss_pred EcchHHhCcCccccc
Confidence 999999999999873
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=1.6e-29 Score=226.95 Aligned_cols=235 Identities=16% Similarity=0.156 Sum_probs=155.9
Q ss_pred HhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECC
Q 019041 58 WPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGG 137 (347)
Q Consensus 58 i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 137 (347)
...+.+++++++++|||+|||++|+++++..+... +.++||++|+++|+.|+.+.+.. ..+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTT------SCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcC------ceEeEEecc
Confidence 44566789999999999999999999999877642 56899999999999999988862 222211111
Q ss_pred CCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhh-----hccCChHHHHHHHhhcCCCccEEEEE
Q 019041 138 APKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM-----LDMGFEPQIRKIVTQIRPDRQTLYWS 212 (347)
Q Consensus 138 ~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~-----~~~~~~~~~~~~~~~~~~~~~~i~ls 212 (347)
.... -..+..+.+.|.+.+...+... ..++++++||+||||.. ...++.. .. ...+..+++++|
T Consensus 82 ~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~---~~--~~~~~~~~il~S 150 (459)
T 2z83_A 82 VQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIA---TK--VELGEAAAIFMT 150 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHH---HH--HHTTSCEEEEEC
T ss_pred cccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHH---HH--hccCCccEEEEE
Confidence 1100 0113457778888777665543 45778999999999973 2211111 11 113678999999
Q ss_pred eecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHH
Q 019041 213 ATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQ 292 (347)
Q Consensus 213 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~ 292 (347)
||++.....+... ..|..... ......... .+...+.+ .++++||||++++.++.
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~----------------~~~~~~~~~-----~~~~~l~~--~~~~~LVF~~s~~~~~~ 205 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQ----------------DEIPDRAWS-----SGYEWITE--YAGKTVWFVASVKMGNE 205 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEE----------------CCCCSSCCS-----SCCHHHHH--CCSCEEEECSCHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEec----------------ccCCcchhH-----HHHHHHHh--cCCCEEEEeCChHHHHH
Confidence 9997643211110 11111100 000001111 11122333 36799999999999999
Q ss_pred HHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 293 VTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 293 ~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
+++.|++.|+.+..+|++ +|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 206 l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~ 254 (459)
T 2z83_A 206 IAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA 254 (459)
T ss_dssp HHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC
T ss_pred HHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC
Confidence 999999999999999985 5677899999999999999999999999997
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-27 Score=227.14 Aligned_cols=286 Identities=17% Similarity=0.215 Sum_probs=187.8
Q ss_pred CCcHHHHhhHhhhh----cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|++||.++++.+. .+.++++..+||+|||+.++..+...+.... ....+||||| .+++.||.+++.++.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-----~~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-----QNGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-----CCSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-----CCCCEEEEEC-chHHHHHHHHHHHHC
Confidence 79999999998665 6889999999999999876665544432221 1456899999 678899999999986
Q ss_pred cCCCceEEEEECCCCCchhhHh------------hcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCCh
Q 019041 125 SRAGIRSTCIYGGAPKGPQIRD------------LRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFE 192 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~ 192 (347)
. ++++...+|+......++. ....++|+|+|++++...... +....+++||+||||++.+..
T Consensus 310 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~-- 383 (800)
T 3mwy_W 310 P--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE-- 383 (800)
T ss_dssp T--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--
T ss_pred C--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--
Confidence 4 5667777766544333222 123578999999999764322 112368999999999986533
Q ss_pred HHHHHHHhhcCCCccEEEEEeecchh----HHHHHHHhcCC-----------------------------CeEEEecccc
Q 019041 193 PQIRKIVTQIRPDRQTLYWSATWPRE----VETLARQFLRN-----------------------------PYKVIIGSLE 239 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~lsaT~~~~----~~~~~~~~~~~-----------------------------~~~~~~~~~~ 239 (347)
......+..+ ...+.+++||||-.. +..++..+.+. |..+......
T Consensus 384 s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 2344444444 455679999998321 11111111111 1111110000
Q ss_pred ccc-ccccceeEEEec--c-hh----------------------------------------------------------
Q 019041 240 LKA-NQSINQVVEVVT--E-AE---------------------------------------------------------- 257 (347)
Q Consensus 240 ~~~-~~~~~~~~~~~~--~-~~---------------------------------------------------------- 257 (347)
... .+........+. . ..
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 000 000000000000 0 00
Q ss_pred ---------ccccHHHHHHHHHHHhh-cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCC
Q 019041 258 ---------KYNSMFICRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR 327 (347)
Q Consensus 258 ---------~~~~~~~~~l~~~~~~~-~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 327 (347)
...+.....+.+++... ..++++||||.....+..+.+.|...|+.+..++|.++..+|..+++.|++++
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 00112233444555543 35679999999999999999999999999999999999999999999999876
Q ss_pred CC---EEEEecccccCCCCCcCC
Q 019041 328 SP---IMTATDVAARGLGRITVC 347 (347)
Q Consensus 328 ~~---vlv~T~~~~~Gidip~v~ 347 (347)
.+ +|++|.++++|+|+|.++
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~ 645 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTAD 645 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCC
T ss_pred CCceEEEEecccccCCCCccccc
Confidence 54 999999999999999864
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.95 E-value=4e-27 Score=218.04 Aligned_cols=246 Identities=17% Similarity=0.087 Sum_probs=174.2
Q ss_pred HHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceE
Q 019041 52 PIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRS 131 (347)
Q Consensus 52 ~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 131 (347)
|.|+......+++++++++||||||||..++ ..+.. ....+|++|+++|+.|+.+.+.+. ++.+
T Consensus 143 p~~~~p~ar~l~rk~vlv~apTGSGKT~~al----~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v 206 (677)
T 3rc3_A 143 PPNWYPDARAMQRKIIFHSGPTNSGKTYHAI----QKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA----GVPC 206 (677)
T ss_dssp GGGGCHHHHTSCCEEEEEECCTTSSHHHHHH----HHHHH--------SSSEEEEESSHHHHHHHHHHHHHT----TCCE
T ss_pred hhhhCHHHHhcCCCEEEEEcCCCCCHHHHHH----HHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc----CCcE
Confidence 3455555566788999999999999997333 33333 223599999999999999999875 6677
Q ss_pred EEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcC-CCccEEE
Q 019041 132 TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR-PDRQTLY 210 (347)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~ 210 (347)
..+.|+...... .-....+++++|++.+. ....++++|+||+|++.+.+++..+..++..++ ...++++
T Consensus 207 ~lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~ 276 (677)
T 3rc3_A 207 DLVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCG 276 (677)
T ss_dssp EEECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEE
T ss_pred EEEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEe
Confidence 778777543110 00112678899875432 235689999999999988889999998888886 5678899
Q ss_pred EEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccH
Q 019041 211 WSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGC 290 (347)
Q Consensus 211 lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~ 290 (347)
+|||. +....+.... +....+..... .. . .... .... ..+... .++.+|||++++.+
T Consensus 277 ~SAT~-~~i~~l~~~~-~~~~~v~~~~r--~~----~--l~~~--~~~l---------~~l~~~--~~g~iIf~~s~~~i 333 (677)
T 3rc3_A 277 EPAAI-DLVMELMYTT-GEEVEVRDYKR--LT----P--ISVL--DHAL---------ESLDNL--RPGDCIVCFSKNDI 333 (677)
T ss_dssp CGGGH-HHHHHHHHHH-TCCEEEEECCC--SS----C--EEEC--SSCC---------CSGGGC--CTTEEEECSSHHHH
T ss_pred ccchH-HHHHHHHHhc-CCceEEEEeee--cc----h--HHHH--HHHH---------HHHHhc--CCCCEEEEcCHHHH
Confidence 99994 3333333333 33332211100 00 0 0000 0000 001111 23458889999999
Q ss_pred HHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhc--CCCCEEEEecccccCCCCCcCC
Q 019041 291 DQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS--GRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 291 ~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+.+++.|.+.++.+..+||++++++|..+++.|++ |..+|||||+++++|+|+ +++
T Consensus 334 e~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~ 391 (677)
T 3rc3_A 334 YSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIR 391 (677)
T ss_dssp HHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBS
T ss_pred HHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Ccc
Confidence 99999999999999999999999999999999999 889999999999999999 664
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=5e-26 Score=212.34 Aligned_cols=291 Identities=19% Similarity=0.190 Sum_probs=184.1
Q ss_pred CCcHHHHhhHhhhh---------cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMAL---------KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~---------~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 119 (347)
.|+|||.+++..+. .+..+++..+||+|||+.++..+...+...+.. .....++||+||+ +|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~-~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC-KPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS-SCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc-cCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999998763 346789999999999998776666555443321 1113569999996 888999999
Q ss_pred HHHhccCCCceEEEEECCCCCch--hhHhhc------CCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCC
Q 019041 120 ALKFGSRAGIRSTCIYGGAPKGP--QIRDLR------RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (347)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (347)
+.++... .+.+..++++..... ....+. ...+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-
Confidence 9998654 455666666543221 111111 247899999999876543 3334578999999999986543
Q ss_pred hHHHHHHHhhcCCCccEEEEEeecchhH-------------------HHHHHHhcC------------------------
Q 019041 192 EPQIRKIVTQIRPDRQTLYWSATWPREV-------------------ETLARQFLR------------------------ 228 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~lsaT~~~~~-------------------~~~~~~~~~------------------------ 228 (347)
......+..+ ...+.+++||||-... ..+.+.+..
T Consensus 209 -~~~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2233334444 4567899999974321 000000000
Q ss_pred -----CCeEEEecccccc--cccccceeEEEe-cch--------------------------------------------
Q 019041 229 -----NPYKVIIGSLELK--ANQSINQVVEVV-TEA-------------------------------------------- 256 (347)
Q Consensus 229 -----~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~-------------------------------------------- 256 (347)
.|..+.-...... .+......+... +..
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 0000000000000 000000000000 000
Q ss_pred ---------------------------hccccHHHHHHHHHHHhh--cCCCeEEEEecCcccHHHHHHHHhhCCCCceee
Q 019041 257 ---------------------------EKYNSMFICRLIKLLKEV--MDGSRILIFTETKKGCDQVTRQLRMDGWPALSI 307 (347)
Q Consensus 257 ---------------------------~~~~~~~~~~l~~~~~~~--~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~ 307 (347)
....+.....+..++... ..+.++||||++...+..+++.|...|+.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 000011112222333322 256799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCC---EEEEecccccCCCCCcCC
Q 019041 308 HGDKNQSERDWVLAEFRSGRSP---IMTATDVAARGLGRITVC 347 (347)
Q Consensus 308 ~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidip~v~ 347 (347)
||+++..+|..++++|++|+.. +|++|.++++|+|+++++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~ 489 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGAN 489 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCC
Confidence 9999999999999999998764 899999999999999763
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=5.1e-24 Score=196.34 Aligned_cols=131 Identities=25% Similarity=0.269 Sum_probs=110.5
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..|+ .|++.|..++..+++|+ +.++.||+|||++|.+|++..... +..++|++||++||.|..+++..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4789 99999999999999998 999999999999999998654433 456999999999999999999999
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHH-HHHHhcCC------CCCC---cccEEEEecchhhh
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLR---RVTYLVLDEADRML 187 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~---~~~~iIvDE~h~~~ 187 (347)
....++.+..+.|+.+... +....+++|+|+||..| ++++..+. ..+. ++.++|+||+|.++
T Consensus 144 ~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999999876433 33334689999999999 77776552 3466 79999999999865
No 74
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=182.70 Aligned_cols=167 Identities=23% Similarity=0.224 Sum_probs=120.0
Q ss_pred CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHH-HHHHHHHh
Q 019041 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ-IQEEALKF 123 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q-~~~~~~~~ 123 (347)
.+...|+++|.++++.+++++++++.+|||+|||++++.++...+...... ..+.++||++|+++|+.| +.+.+.++
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA--SEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT--TCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc--cCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 445589999999999999999999999999999999998888766542110 125689999999999999 88888887
Q ss_pred ccCCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCC------CCCCcccEEEEecchhhhccCChHHH-H
Q 019041 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH------TNLRRVTYLVLDEADRMLDMGFEPQI-R 196 (347)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~------~~~~~~~~iIvDE~h~~~~~~~~~~~-~ 196 (347)
... ++.+..+.|+.............++|+|+||+.+...+.... ..+.++++||+||||++...++...+ .
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 654 677888888776655544444568999999999998877643 45678999999999998766543333 3
Q ss_pred HHHhhc-------------CCCccEEEEEee
Q 019041 197 KIVTQI-------------RPDRQTLYWSAT 214 (347)
Q Consensus 197 ~~~~~~-------------~~~~~~i~lsaT 214 (347)
.++... .+..+++++|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332221 156789999998
No 75
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.93 E-value=6.2e-26 Score=191.41 Aligned_cols=195 Identities=16% Similarity=0.126 Sum_probs=143.1
Q ss_pred HHHHHhhhccceeeccCCCCCCccccccCCCCHHHHHHHHHCCC------CCCcHHHHhhHhhhhcCCcEEEEcCCCCch
Q 019041 4 TEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGF------VEPTPIQAQGWPMALKGRDLIGIAETGSGK 77 (347)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~------~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGK 77 (347)
+++.++++.+++.....+...+...++. ..+.+.+....+ ..|+++|.++++.++++++.++++|||+||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGK 141 (282)
T 1rif_A 66 GQIKKFCDNFGYKAWIDPQINEKEELSR----KDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGR 141 (282)
T ss_dssp GGHHHHHHHTTCCEEECGGGGCCCCCCH----HHHHHHHHTCCCEETTEECCCCHHHHHHHHHHHHHSEEEECCCTTSCH
T ss_pred HHHHHHHHhcCCeeEecCccCCCCCCCH----HHHHhHHhHHHHhcCCCccCccHHHHHHHHHHHhcCCeEEEcCCCCCc
Confidence 4667777777777655444333222221 222223222232 389999999999998888899999999999
Q ss_pred hHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhcCCCcEEEeC
Q 019041 78 TLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIAT 157 (347)
Q Consensus 78 T~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T 157 (347)
|.+++.++...+... ..++||++|+++|+.||.+.+.+++...+..+..+.++..... ....+.+|+|+|
T Consensus 142 T~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T 211 (282)
T 1rif_A 142 SLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGT 211 (282)
T ss_dssp HHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEEC
T ss_pred HHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEc
Confidence 999887777665432 3489999999999999999999997766777888887765543 222468999999
Q ss_pred hHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecchhH
Q 019041 158 PGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREV 219 (347)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~ 219 (347)
++++.... ...+.+++++|+||||++. ...+..++..+.+..+++++||||.+..
T Consensus 212 ~~~l~~~~---~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 212 WQTVVKQP---KEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp HHHHTTSC---GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEEECSSCCTTS
T ss_pred hHHHHhhH---HHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCeEEEEeCCCCCcc
Confidence 98875432 2245678999999999985 4477778888777899999999997653
No 76
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.92 E-value=1.5e-22 Score=183.36 Aligned_cols=278 Identities=19% Similarity=0.213 Sum_probs=189.2
Q ss_pred HCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..|+ .|++.|.-..-.+.+|+ +..+.||+|||+++.+|++..... +..+.|++|+..||.|-.+++..+
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHH
Confidence 3566 78899988888888887 999999999999999998755544 556999999999999999999999
Q ss_pred ccCCCceEEEEECC--------------------------------------------------CCCchhhHhhcCCCcE
Q 019041 124 GSRAGIRSTCIYGG--------------------------------------------------APKGPQIRDLRRGVEI 153 (347)
Q Consensus 124 ~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~i 153 (347)
...+|+.+.++... .........+ .++|
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DI 217 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDV 217 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCC
Confidence 99999999988872 1111111222 4799
Q ss_pred EEeChHHHH-HHHhcC------CCCCCcccEEEEecchhhhccC-------------ChHHH---HHHHhhc--------
Q 019041 154 VIATPGRLI-DMLEAQ------HTNLRRVTYLVLDEADRMLDMG-------------FEPQI---RKIVTQI-------- 202 (347)
Q Consensus 154 iv~T~~~l~-~~~~~~------~~~~~~~~~iIvDE~h~~~~~~-------------~~~~~---~~~~~~~-------- 202 (347)
+++|...|- ++++.+ ..-...+.+.||||++.++-.. ....+ ..+...+
T Consensus 218 tYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~v 297 (822)
T 3jux_A 218 TYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTV 297 (822)
T ss_dssp EEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEE
T ss_pred EEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEE
Confidence 999987763 444322 1123568899999999643100 00000 0000000
Q ss_pred ------------------------------------------------C-------------------------------
Q 019041 203 ------------------------------------------------R------------------------------- 203 (347)
Q Consensus 203 ------------------------------------------------~------------------------------- 203 (347)
.
T Consensus 298 dek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~G 377 (822)
T 3jux_A 298 DEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGG 377 (822)
T ss_dssp CCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGG
T ss_pred EcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchH
Confidence 0
Q ss_pred ------------------------------CCccEEEEEeecchhHHHHHHHhcCCCeEEEecccccccccccceeEEEe
Q 019041 204 ------------------------------PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV 253 (347)
Q Consensus 204 ------------------------------~~~~~i~lsaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (347)
.-.++.+||+|.......+.+.|... .+.+............ .....
T Consensus 378 LHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnkp~~R~d~~-d~vy~ 454 (822)
T 3jux_A 378 LHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHKPMIRKDHD-DLVFR 454 (822)
T ss_dssp HHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSSCCCCEECC-CEEES
T ss_pred HHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCCCcceeecC-cEEEe
Confidence 00478899999988777776666422 3333222111111111 12223
Q ss_pred cchhccccHHHHHHHHHHHhh-cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEE
Q 019041 254 TEAEKYNSMFICRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMT 332 (347)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 332 (347)
....+.. .+.+.+.+. ..+.++||||++++.++.+++.|++.|++..++||+..+.++..+.+.++.| .|+|
T Consensus 455 t~~eK~~-----al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtV 527 (822)
T 3jux_A 455 TQKEKYE-----KIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTI 527 (822)
T ss_dssp SHHHHHH-----HHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEE
T ss_pred cHHHHHH-----HHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEE
Confidence 3333333 555555543 3567999999999999999999999999999999996666665555666655 7999
Q ss_pred EecccccCCCCC
Q 019041 333 ATDVAARGLGRI 344 (347)
Q Consensus 333 ~T~~~~~Gidip 344 (347)
||+++++|+|++
T Consensus 528 ATdmAgRGtDI~ 539 (822)
T 3jux_A 528 ATNMAGRGTDIK 539 (822)
T ss_dssp EETTTTTTCCCC
T ss_pred EcchhhCCcCcc
Confidence 999999999997
No 77
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=159.38 Aligned_cols=165 Identities=19% Similarity=0.185 Sum_probs=118.9
Q ss_pred HHCCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 43 AKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 43 ~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
.......++++|.++++.+.+|+++++.||||+|||.++..+++......... .+.++++++|+++++.|+.+.+..
T Consensus 55 ~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~---~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 55 QERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRA---AECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp HHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCG---GGCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCC---CceEEEEeccchHHHHHHHHHHHH
Confidence 33344468999999999999999999999999999988877777765543221 145899999999999999888875
Q ss_pred hcc-CCCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhh-hccCCh-HHHHHHH
Q 019041 123 FGS-RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM-LDMGFE-PQIRKIV 199 (347)
Q Consensus 123 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~-~~~~~~-~~~~~~~ 199 (347)
... ..+..+........ ......++|+|+|++++.+.+.. .+.+++++|+||+|.. .+.++. ..+..++
T Consensus 132 ~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 132 ERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp TTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred HhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 422 33333332211110 01113478999999999998876 3688999999999974 444444 3555555
Q ss_pred hhcCCCccEEEEEeecchhH
Q 019041 200 TQIRPDRQTLYWSATWPREV 219 (347)
Q Consensus 200 ~~~~~~~~~i~lsaT~~~~~ 219 (347)
... +..|++++|||++...
T Consensus 204 ~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 204 QAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHC-TTSEEEEEECSSCCHH
T ss_pred hhC-CCCeEEEEecCCCHHH
Confidence 544 5789999999998764
No 78
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.87 E-value=1.2e-21 Score=160.17 Aligned_cols=139 Identities=22% Similarity=0.150 Sum_probs=108.7
Q ss_pred CCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 019041 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 127 (347)
..|+++|.+++..+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 37999999999999999899999999999999887766543 457999999999999999999884
Q ss_pred Cce-EEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCc
Q 019041 128 GIR-STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDR 206 (347)
Q Consensus 128 ~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~ 206 (347)
++. +..+.++... ..+|+|+|++.+....... ...+++||+||+|++.+..+ ..++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~----~~i~~~~-~~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQMS-IAP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHTC-CCS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHH----HHHHHhc-cCC
Confidence 566 6666665532 4689999999987655421 24589999999999866543 3344444 467
Q ss_pred cEEEEEeecchh
Q 019041 207 QTLYWSATWPRE 218 (347)
Q Consensus 207 ~~i~lsaT~~~~ 218 (347)
+++++||||.+.
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999998764
No 79
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=1.1e-20 Score=173.40 Aligned_cols=129 Identities=19% Similarity=0.110 Sum_probs=99.9
Q ss_pred CCcHHHHhhHhh----hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~----~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
++|++|.+++.. +..++++++++|||+|||++|+++++.. +.+++|++|+++|+.|+.+.+..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 799999998765 4568999999999999999999999873 6789999999999999999999887
Q ss_pred cCCCceEEEEECCCCC---------------------------------chh------------------hHhhcCCCcE
Q 019041 125 SRAGIRSTCIYGGAPK---------------------------------GPQ------------------IRDLRRGVEI 153 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~~---------------------------------~~~------------------~~~~~~~~~i 153 (347)
...++++..+.|..+. ... .+.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7667777777663211 000 0222346899
Q ss_pred EEeChHHHHHHHhcCCCCC-CcccEEEEecchhhhc
Q 019041 154 VIATPGRLIDMLEAQHTNL-RRVTYLVLDEADRMLD 188 (347)
Q Consensus 154 iv~T~~~l~~~~~~~~~~~-~~~~~iIvDE~h~~~~ 188 (347)
+|+|+..+..........+ ....++|+||||++.+
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999999987654333322 4678999999998765
No 80
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.87 E-value=4.2e-21 Score=175.54 Aligned_cols=127 Identities=20% Similarity=0.196 Sum_probs=86.9
Q ss_pred CCCCCCcHHHHhhHhh----hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 45 LGFVEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 45 ~~~~~~~~~Q~~~i~~----~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
.|+ .||++|.+++.. +..++++++.+|||+|||++++++++.. +.+++|++|+++|+.|+.+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 467 899999998654 4578999999999999999999998765 678999999999999999888
Q ss_pred HHhccCCCceEEEEECCCCC--------------------------------c---------------hhhHhhcCCCcE
Q 019041 121 LKFGSRAGIRSTCIYGGAPK--------------------------------G---------------PQIRDLRRGVEI 153 (347)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~--------------------------------~---------------~~~~~~~~~~~i 153 (347)
.++ ++++..+.|.... . ...+.....++|
T Consensus 72 ~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GGG----TCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred Hhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 774 3333333322100 0 001122345799
Q ss_pred EEeChHHHHHHHhcCCC-------CCCcccEEEEecchhhh
Q 019041 154 VIATPGRLIDMLEAQHT-------NLRRVTYLVLDEADRML 187 (347)
Q Consensus 154 iv~T~~~l~~~~~~~~~-------~~~~~~~iIvDE~h~~~ 187 (347)
+|+|++.+......... .+...+++|+||||++.
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999999864432211 23567899999999874
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.84 E-value=8.1e-20 Score=170.41 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=69.6
Q ss_pred cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
..+.++||||+++..++.+++.|.+.|+.+..+||++++.+|..+++.|+.|+.+|||||+++++|+|+|+|+
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~ 509 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVS 509 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEE
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999863
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.79 E-value=6.3e-18 Score=157.64 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=69.6
Q ss_pred cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
..+.++||||+++..++.+++.|.+.|+++..+||++++.+|..+++.|+.|+.+|||||+++++|+|+|+|+
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~ 515 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVS 515 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCC
Confidence 4577999999999999999999999999999999999999999999999999999999999999999999863
No 83
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=1.2e-18 Score=161.22 Aligned_cols=81 Identities=27% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCcHHHHhhHhh----hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~----~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.||+.|.+++.. +.+++++++.||||+|||++++++++..+... +.+++|++||++++.|+.+.+..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHh
Confidence 689999999864 45689999999999999999999999887652 5689999999999999999998876
Q ss_pred cCCCceEEEEEC
Q 019041 125 SRAGIRSTCIYG 136 (347)
Q Consensus 125 ~~~~~~~~~~~~ 136 (347)
...++++..+.|
T Consensus 76 ~~~~~~~~~l~g 87 (620)
T 4a15_A 76 STMKIRAIPMQG 87 (620)
T ss_dssp HHSCCCEEECCC
T ss_pred hccCeEEEEEEC
Confidence 544555544433
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.58 E-value=5.8e-15 Score=116.22 Aligned_cols=116 Identities=31% Similarity=0.439 Sum_probs=82.8
Q ss_pred HHhcCCCeEEEecccccccccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCC
Q 019041 224 RQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWP 303 (347)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~ 303 (347)
+.++.+|..+.+.... .....+...+.......+.. .+.+++.. .++++||||++++.++.+++.|...|+.
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~-----~L~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~g~~ 80 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMV-----YLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVE 80 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHH-----HHHHHHTT--SCSCEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHH-----HHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHHcCCc
Confidence 4466667666655443 33445555555555544433 66666665 3568999999999999999999999999
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCcCC
Q 019041 304 ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 304 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 81 ~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~ 124 (191)
T 2p6n_A 81 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQ 124 (191)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCS
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCC
Confidence 99999999999999999999999999999999999999999875
No 85
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.57 E-value=2e-14 Score=110.49 Aligned_cols=97 Identities=34% Similarity=0.468 Sum_probs=82.4
Q ss_pred ccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHh
Q 019041 245 SINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFR 324 (347)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 324 (347)
++.+.+.......+.. .+.+++... .++++||||+++++++.+++.|.+.|+.+..+||++++.+|..+++.|+
T Consensus 9 ~i~~~~~~~~~~~K~~-----~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 9 NIEHAVIQVREENKFS-----LLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CEEEEEEECCGGGHHH-----HHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cceEEEEECChHHHHH-----HHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3445555555544443 566666654 5679999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEecccccCCCCCcCC
Q 019041 325 SGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 325 ~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
+|+.+|||||+++++|+|+|+++
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~ 105 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENIS 105 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCS
T ss_pred cCCCeEEEECChhhcCCchhcCC
Confidence 99999999999999999999874
No 86
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.56 E-value=8.4e-15 Score=114.81 Aligned_cols=100 Identities=44% Similarity=0.623 Sum_probs=71.5
Q ss_pred ccccceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHH
Q 019041 243 NQSINQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAE 322 (347)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 322 (347)
..++...+..+....+.. .+.+++.....++++||||++++.++.+++.|...|+.+..+||++++.+|..+++.
T Consensus 17 ~~~i~q~~~~v~~~~K~~-----~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRS-----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp CTTEEEEEEECCGGGHHH-----HHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHH
T ss_pred CCCceEEEEEeCcHHHHH-----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHH
Confidence 344555555555554443 677777776567899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEEecccccCCCCCcCC
Q 019041 323 FRSGRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 323 f~~g~~~vlv~T~~~~~Gidip~v~ 347 (347)
|++|+.+|||||+++++|+|+|+++
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~ 116 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVK 116 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBS
T ss_pred HHcCCCeEEEEcChhhcCCCcccCC
Confidence 9999999999999999999999874
No 87
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.56 E-value=2.1e-14 Score=111.24 Aligned_cols=96 Identities=25% Similarity=0.393 Sum_probs=81.6
Q ss_pred cceeEEEecchhccccHHHHHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhc
Q 019041 246 INQVVEVVTEAEKYNSMFICRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 325 (347)
+.+.+.......+.. .+.+++... .++++||||+++++++.+++.|...|+.+..+||++++.+|..+++.|++
T Consensus 6 i~q~~~~~~~~~K~~-----~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 6 LQQYYVKLKDNEKNR-----KLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp CEEEEEECCGGGHHH-----HHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEECChHHHHH-----HHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 344444454444433 566666654 56799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccCCCCCcCC
Q 019041 326 GRSPIMTATDVAARGLGRITVC 347 (347)
Q Consensus 326 g~~~vlv~T~~~~~Gidip~v~ 347 (347)
|+.+|||||+++++|+|+|+++
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~ 101 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVN 101 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCS
T ss_pred CCCcEEEECCchhcCcchhhCC
Confidence 9999999999999999999874
No 88
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.55 E-value=4.6e-14 Score=108.66 Aligned_cols=81 Identities=35% Similarity=0.536 Sum_probs=74.7
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.+.+++... .++++||||+++++++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 20 ~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~ 98 (165)
T 1fuk_A 20 CLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 98 (165)
T ss_dssp HHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCS
T ss_pred HHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCccc
Confidence 566666654 5679999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 019041 346 VC 347 (347)
Q Consensus 346 v~ 347 (347)
++
T Consensus 99 ~~ 100 (165)
T 1fuk_A 99 VS 100 (165)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 89
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=110.23 Aligned_cols=81 Identities=22% Similarity=0.432 Sum_probs=74.3
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.+.+++... .++++||||+++++++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 24 ~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~ 102 (175)
T 2rb4_A 24 ALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQ 102 (175)
T ss_dssp HHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTT
T ss_pred HHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCccc
Confidence 566666554 5679999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 019041 346 VC 347 (347)
Q Consensus 346 v~ 347 (347)
++
T Consensus 103 ~~ 104 (175)
T 2rb4_A 103 VT 104 (175)
T ss_dssp EE
T ss_pred CC
Confidence 63
No 90
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.49 E-value=1.4e-13 Score=110.38 Aligned_cols=81 Identities=41% Similarity=0.571 Sum_probs=74.4
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.+.+++... .++++||||+++++++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 21 ~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~ 99 (212)
T 3eaq_A 21 VLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQ 99 (212)
T ss_dssp HHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCC
T ss_pred HHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCcc
Confidence 555665543 5679999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 019041 346 VC 347 (347)
Q Consensus 346 v~ 347 (347)
++
T Consensus 100 v~ 101 (212)
T 3eaq_A 100 VD 101 (212)
T ss_dssp BS
T ss_pred Cc
Confidence 74
No 91
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.46 E-value=3e-13 Score=113.64 Aligned_cols=81 Identities=40% Similarity=0.569 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.+.+++... .++++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 18 ~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~ 96 (300)
T 3i32_A 18 VLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQ 96 (300)
T ss_dssp HHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCC
T ss_pred HHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccc
Confidence 566666554 3789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 019041 346 VC 347 (347)
Q Consensus 346 v~ 347 (347)
|+
T Consensus 97 v~ 98 (300)
T 3i32_A 97 VD 98 (300)
T ss_dssp CS
T ss_pred ee
Confidence 84
No 92
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.09 E-value=2.9e-14 Score=110.37 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=73.0
Q ss_pred HHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 266 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
.+.+++.. ..++++||||+++++++.+++.|++.|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 20 ~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~ 98 (170)
T 2yjt_D 20 LLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPD 98 (170)
Confidence 44455544 34579999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 019041 346 VC 347 (347)
Q Consensus 346 v~ 347 (347)
++
T Consensus 99 ~~ 100 (170)
T 2yjt_D 99 VS 100 (170)
Confidence 74
No 93
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.02 E-value=1.2e-09 Score=101.18 Aligned_cols=146 Identities=20% Similarity=0.223 Sum_probs=86.8
Q ss_pred cHHHHhhHhhhhcCCcEEEEcCCCCchhHH--hHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLS--YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~--~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.+.|+.++..++.++.+++.|++|+|||.+ +++..+..+... .+.++++++||...+.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~------~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG------ERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS------CCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc------CCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 688999999999999999999999999953 334444332111 256899999999999999888776544333
Q ss_pred ceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccE
Q 019041 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (347)
+......+-......+ ..++-.+++.. . +.........++++|+||++++. ...+..++..++...++
T Consensus 225 l~~~~~~~~~~~~~Ti------h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQKKRIPEDASTL------HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCCCSCSCCCBTT------TSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEE
T ss_pred CCHHHHhccchhhhhh------HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEE
Confidence 2110000000000000 01111112110 1 11111222368999999999652 45667778888778888
Q ss_pred EEEEee
Q 019041 209 LYWSAT 214 (347)
Q Consensus 209 i~lsaT 214 (347)
+++.-.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 887754
No 94
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.01 E-value=1.3e-09 Score=90.39 Aligned_cols=84 Identities=17% Similarity=0.312 Sum_probs=72.7
Q ss_pred HHHHHHHHHhh-cCCCeEEEEecCcccHHHHHHHHhhC-CCCceeecCCCCHHHHHHHHHHHhcC-CCC-EEEEeccccc
Q 019041 264 ICRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSG-RSP-IMTATDVAAR 339 (347)
Q Consensus 264 ~~~l~~~~~~~-~~~~~~lvf~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~T~~~~~ 339 (347)
...+.+++.+. ..++++||||++...+..+.+.|.+. |+.+..+||+++..+|..+++.|++| +.+ +|++|+++++
T Consensus 98 ~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~ 177 (271)
T 1z5z_A 98 MIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 177 (271)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCC
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcC
Confidence 33555655543 35789999999999999999999875 99999999999999999999999998 677 7899999999
Q ss_pred CCCCCcCC
Q 019041 340 GLGRITVC 347 (347)
Q Consensus 340 Gidip~v~ 347 (347)
|+|+++++
T Consensus 178 Glnl~~a~ 185 (271)
T 1z5z_A 178 GINLTSAN 185 (271)
T ss_dssp CCCCTTCS
T ss_pred CcCcccCC
Confidence 99999864
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.94 E-value=1e-07 Score=89.59 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=55.5
Q ss_pred CCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
..+++.|++++.. .+..++|.|++|||||.+.+..+...+..... ...++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~----~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC----SPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC----CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC----ChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999974 46789999999999998766656555544211 13579999999999999999888753
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.80 E-value=1.1e-08 Score=95.75 Aligned_cols=67 Identities=22% Similarity=0.134 Sum_probs=54.8
Q ss_pred CCcHHHHhhHhhhhcCC-cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 49 EPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
.|.+-|.+|+..++..+ -.+|+||+|||||.+.+..+.+.+.+ +.++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~--------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ--------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 58899999999887654 67999999999998766555555443 568999999999999998888764
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.74 E-value=9e-08 Score=87.75 Aligned_cols=123 Identities=19% Similarity=0.168 Sum_probs=80.3
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.+++.|+.++..+..++.+++.||+|+|||.+.. .++..+... +.++++++||...+..+.+...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~~------- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL-------GLEVGLCAPTGKAARRLGEVTG------- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHT-------
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc-------CCeEEEecCcHHHHHHhHhhhc-------
Confidence 6899999999999999999999999999997533 344444332 5679999999998877665432
Q ss_pred ceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHH----HhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCC
Q 019041 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDM----LEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~----~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (347)
....+ .++++.. +.........++++||||++.+. ...+..++..++.
T Consensus 254 ~~a~T------------------------ih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 254 RTAST------------------------VHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPP 305 (574)
T ss_dssp SCEEE------------------------HHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCT
T ss_pred ccHHH------------------------HHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcC
Confidence 11111 1111100 11111223468999999999863 4456666776666
Q ss_pred CccEEEEEee
Q 019041 205 DRQTLYWSAT 214 (347)
Q Consensus 205 ~~~~i~lsaT 214 (347)
..+++++.-.
T Consensus 306 ~~~lilvGD~ 315 (574)
T 3e1s_A 306 GARVLLVGDT 315 (574)
T ss_dssp TCEEEEEECT
T ss_pred CCEEEEEecc
Confidence 6666666543
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.72 E-value=8.1e-08 Score=86.13 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=50.6
Q ss_pred HCCCCCCcHHHHhhHhhhhcC-----CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHH
Q 019041 44 KLGFVEPTPIQAQGWPMALKG-----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (347)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~-----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 118 (347)
...|..|++.|++++..++.. ..+++.|++|+|||.+. ..++..+.... ...+++++|+...+..+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHHh
Confidence 356788999999999876542 38999999999999754 44444444421 2369999999988776655
Q ss_pred HH
Q 019041 119 EA 120 (347)
Q Consensus 119 ~~ 120 (347)
.+
T Consensus 93 ~~ 94 (459)
T 3upu_A 93 LS 94 (459)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.70 E-value=2e-07 Score=86.71 Aligned_cols=70 Identities=21% Similarity=0.162 Sum_probs=55.5
Q ss_pred CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
...+++.|..++..++.+...+++||+|+|||.+....+ ..+... .+.++++++|+..-+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i-~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH-HHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH-HHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 446899999999998888889999999999998654433 333321 1568999999999999998888764
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=3.6e-07 Score=86.99 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=55.6
Q ss_pred CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
+..+++.|.+++..++.+...+|.||+|+|||.+....+...+.. .+.++++++|+..-+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 346889999999998887788999999999998655443333221 1567999999999999999988775
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.60 E-value=5.1e-07 Score=85.82 Aligned_cols=70 Identities=21% Similarity=0.170 Sum_probs=55.4
Q ss_pred CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
...+.+.|.+++..++.+...+++||+|+|||.+... ++..+... .+.++++++||..-+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 3467899999999988888899999999999986543 34444332 1568999999999999998888764
No 102
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=98.40 E-value=1e-05 Score=76.21 Aligned_cols=71 Identities=17% Similarity=0.054 Sum_probs=55.4
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
.+++.|++++.. .+.+++|.|+.|||||.+....+...+..... ...++|++|.|+..+.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~----~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC----CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 578999999976 36789999999999998776666655544211 135799999999999999999887643
No 103
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=98.32 E-value=4.7e-05 Score=72.14 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=55.0
Q ss_pred CCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..|++.|++++.. ....++|.|+.|||||.+...-+...+..... ...++|++|.|+..+.++.+.+.+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~----~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV----APWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC----CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4789999999976 35689999999999998776666655543211 1347999999999999998888765
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.93 E-value=4.1e-05 Score=66.98 Aligned_cols=108 Identities=18% Similarity=0.084 Sum_probs=63.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
+-.++.|+.|+|||....- .+. ..+.++++|+++++..|.+.+.+.+.. .
T Consensus 162 ~v~~I~G~aGsGKTt~I~~-~~~------------~~~~lVlTpT~~aa~~l~~kl~~~~~~-------------~---- 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILS-RVN------------FEEDLILVPGRQAAEMIRRRANASGII-------------V---- 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHHH-HCC------------TTTCEEEESCHHHHHHHHHHHTTTSCC-------------C----
T ss_pred cEEEEEcCCCCCHHHHHHH-Hhc------------cCCeEEEeCCHHHHHHHHHHhhhcCcc-------------c----
Confidence 3468999999999974332 221 123699999999999888887532100 0
Q ss_pred HhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
....-+.|.++++-. .........+++|+||+-.+ ....+..++...+ ..+++++.-+
T Consensus 212 -----~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~sm~----~~~~l~~l~~~~~-~~~vilvGD~ 269 (446)
T 3vkw_A 212 -----ATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGLML----HTGCVNFLVEMSL-CDIAYVYGDT 269 (446)
T ss_dssp -----CCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGGGS----CHHHHHHHHHHTT-CSEEEEEECT
T ss_pred -----cccceEEEeHHhhcC--CCCCCCCcCCEEEEeCcccC----CHHHHHHHHHhCC-CCEEEEecCc
Confidence 112336676665432 11111224889999999965 2233444444443 3555555544
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.88 E-value=5e-05 Score=65.64 Aligned_cols=70 Identities=13% Similarity=0.013 Sum_probs=54.4
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 124 (347)
.|.++|...+..+...+.+++..+-+.|||.+++..++..+... .+..++++.|+...+..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 78999999998765556689999999999987666555544432 25689999999999888777776654
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.87 E-value=0.00014 Score=67.27 Aligned_cols=148 Identities=12% Similarity=0.067 Sum_probs=86.9
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.|.++|..++..+-..+..++..+-|+|||.+....++..+...+ +..++++.|+...+..+.+.++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~------~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK------DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS------SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC------CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 579999999987755677899999999999876655555544432 55799999999999998888777654433
Q ss_pred --ceEEEEECCCCCchhhHhhcCCCcEEEeC--hHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCC
Q 019041 129 --IRSTCIYGGAPKGPQIRDLRRGVEIVIAT--PGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (347)
Q Consensus 129 --~~~~~~~~~~~~~~~~~~~~~~~~iiv~T--~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (347)
+........ ...+ .+.++..+.+.+ +..+.. .+.+++|+||+|..... ...+..+...+..
T Consensus 237 ~~~~~~~~~~~---~~~i-~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~ 301 (592)
T 3cpe_A 237 DFLQPGIVEWN---KGSI-ELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISS 301 (592)
T ss_dssp TTTSCCEEEEC---SSEE-EETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSS
T ss_pred HhhccccccCC---ccEE-EecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhcc
Confidence 111000000 0111 123344444433 333222 23679999999976431 2333433333322
Q ss_pred -CccEEEEEeecch
Q 019041 205 -DRQTLYWSATWPR 217 (347)
Q Consensus 205 -~~~~i~lsaT~~~ 217 (347)
....+++..|+..
T Consensus 302 ~~~~~ii~isTP~~ 315 (592)
T 3cpe_A 302 GRRSKIIITTTPNG 315 (592)
T ss_dssp SSCCEEEEEECCCT
T ss_pred CCCceEEEEeCCCC
Confidence 1234444455543
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.78 E-value=4.4e-05 Score=59.16 Aligned_cols=40 Identities=23% Similarity=0.090 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcH
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 110 (347)
.++-.++.||+|+|||..++-. +.+.... +.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~-~~~~~~~-------g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSF-VEIYKLG-------KKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH-HHHHHHT-------TCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHH-HHHHHHC-------CCeEEEEeecc
Confidence 3556789999999999754433 3333321 55788888873
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.75 E-value=9.6e-05 Score=58.84 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=51.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCch
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
.|.-.++.|++|+|||.+++- .+.++... +.+++++.|...-- .........++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~-~~~r~~~~-------g~kVli~~~~~d~r-----~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIR-RLHRLEYA-------DVKYLVFKPKIDTR-----SIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEECCCGG-----GCSSCCCCCCCSS-----------
T ss_pred CcEEEEEECCCCCcHHHHHHH-HHHHHHhc-------CCEEEEEEeccCch-----HHHHHHHhcCCCc-----------
Confidence 355678899999999975444 44444332 55788887754210 0001111111100
Q ss_pred hhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhh
Q 019041 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (347)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (347)
..+-+.+.+.++..+..... -..+++||+||++.+
T Consensus 67 --------~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp --------CCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred --------cccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 12335566677776654322 245899999999964
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.73 E-value=8.7e-05 Score=57.66 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 109 (347)
.|+-.++.+|+|+|||..++- .+.+.... +.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~-~a~r~~~~-------g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR-RIRRAKIA-------KQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHH-HHHHHHHC-------CCEEEEEEec
Confidence 355678999999999975544 44444332 6689999887
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.64 E-value=9e-05 Score=58.14 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~ 111 (347)
|+-.++.+|+|+|||..++-.+...... +.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~--------g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA--------KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT--------TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCEEEEEEeccC
Confidence 4445789999999997554444433332 668999998753
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.50 E-value=0.00039 Score=53.55 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
.++.+++.||+|+|||..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999743
No 112
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.44 E-value=0.00015 Score=57.36 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 110 (347)
|+-.++.|++|+|||..++-.+. +.... +.+++++.|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~-r~~~~-------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVR-RFQIA-------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-HHHTT-------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHH-HHHHC-------CCeEEEEeecC
Confidence 55678899999999975444443 33321 67899998864
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00094 Score=56.14 Aligned_cols=26 Identities=8% Similarity=-0.152 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
+.++++.||+|+|||.++ -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 468999999999999754 34444444
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.33 E-value=0.00024 Score=52.87 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999964
No 115
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.26 E-value=0.0024 Score=58.96 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=73.8
Q ss_pred CCcHHHHhhHhhhhc--CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 019041 49 EPTPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~--~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 126 (347)
.++..|++++..+.. ....++.|+-|.|||.+..+. +..+.. .++|..|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~-~a~~~~----------~~~vtAP~~~a~~~l~~~~~~---- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQL-ISRIAG----------RAIVTAPAKASTDVLAQFAGE---- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHH-HHHSSS----------CEEEECSSCCSCHHHHHHHGG----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHH-HHHHHh----------CcEEECCCHHHHHHHHHHhhC----
Confidence 678999999998876 346799999999999644443 333321 368888998876654433221
Q ss_pred CCceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhcCCCc
Q 019041 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDR 206 (347)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~ 206 (347)
.+-+..|+.+.. .....+++|||||=.+ -.+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhhC----
Confidence 022224544332 1235899999999976 456666666543
Q ss_pred cEEEEEeecc
Q 019041 207 QTLYWSATWP 216 (347)
Q Consensus 207 ~~i~lsaT~~ 216 (347)
..++||.|..
T Consensus 280 ~~v~~~tTv~ 289 (671)
T 2zpa_A 280 PRTLLTTTVQ 289 (671)
T ss_dssp SEEEEEEEBS
T ss_pred CeEEEEecCC
Confidence 3678888854
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.22 E-value=0.00045 Score=54.05 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~ 111 (347)
|.-.++.+|+|+|||...+-. +.+.... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~~-------g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIYA-------KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHHT-------TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHHc-------CCceEEEEeccC
Confidence 455688999999999654433 4444332 567899988653
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.19 E-value=0.0022 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
+..+++.||+|+|||.. +-.+...+
T Consensus 37 ~~~lll~G~~GtGKT~l-a~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL-LQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCcHHHH-HHHHHHHH
Confidence 46899999999999964 33333433
No 118
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.15 E-value=0.00078 Score=67.69 Aligned_cols=70 Identities=21% Similarity=0.174 Sum_probs=54.8
Q ss_pred CCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
.+++-|++++.. .+++++|.|+.|||||.+.+-.++..+...... -...+++++++|++.+.++.+.+..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~--~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENP--IDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC--CCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC--CCccceEEEeccHHHHHHHHHHHHH
Confidence 689999999976 388999999999999988776666666553210 0145799999999999988877765
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.07 E-value=0.0048 Score=51.24 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhh--hhcCCcEEEEcCCCCchhHHh
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM--ALKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~lv~~~tGsGKT~~~ 81 (347)
.|...|+.+.-.+...+.+...-.. .....+.+.. +.....+++.||+|+|||..+
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVEL--PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH--HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH--HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3445688876666666666642210 0011122222 234578999999999999743
No 120
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.02 E-value=0.0042 Score=52.68 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=24.3
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
...++++||+|.+........+..++.......++++.|..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 57899999999875122334455555554444555554433
No 121
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.97 E-value=0.0032 Score=53.71 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=24.3
Q ss_pred CcHHHHhhHhhhh----cCC---cEEEEcCCCCchhHHhH
Q 019041 50 PTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 50 ~~~~Q~~~i~~~~----~~~---~~lv~~~tGsGKT~~~~ 82 (347)
+.|+|.+++..+. .++ .+++.||+|+|||.++.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888876654 332 48999999999997544
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.97 E-value=0.0094 Score=49.09 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
..+++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999997543
No 123
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.96 E-value=0.0017 Score=50.04 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 109 (347)
++=.++.+|+|+|||.- ++-.+...... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHc-------CCeEEEEccc
Confidence 45678999999999954 33334333332 5679999886
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.0076 Score=52.32 Aligned_cols=19 Identities=32% Similarity=0.288 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
.+..+++.||+|+|||..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3468999999999999643
No 125
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.86 E-value=0.0056 Score=51.86 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=32.6
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHHHHh-hHh-hhhcCCcEEEEcCCCCchhHHhH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQ-GWP-MALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~-~i~-~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.|...|+.+.-.+...+.++..-. .+.... .+. .....+.+++.||+|+|||..+-
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 445668888767777777765321 111100 011 11124679999999999997543
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.86 E-value=0.0081 Score=46.02 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
..++++.||+|+|||..+-
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999997443
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.84 E-value=0.016 Score=45.75 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=24.0
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
....++++||+|.+... ....+..++........+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45679999999987432 233444555554444555555443
No 128
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0063 Score=52.68 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=33.4
Q ss_pred CCccccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.|-..|+..+=-+...+.+++. .+..|-.++... +...+.+++.||+|+|||+.+-
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHHH
Confidence 3556688876555555666542 222332232222 2234789999999999997543
No 129
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.83 E-value=0.0097 Score=52.77 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
..+++.||+|+|||..+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999744
No 130
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.82 E-value=0.022 Score=43.96 Aligned_cols=139 Identities=15% Similarity=0.055 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH-HHHHHHHHHHHhccCCCceEEEEECCCCCch
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE-LAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
...+++..++|.|||.+++-.++..+.. +.+++++--.+. .-..=.+.+.++ ++.+.....+-.-..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~ 95 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWET 95 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCC
Confidence 3589999999999998888777777666 667888832221 000001122222 233322222111000
Q ss_pred hhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccC--ChHHHHHHHhhcCCCccEEEEEeecchhHH
Q 019041 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG--FEPQIRKIVTQIRPDRQTLYWSATWPREVE 220 (347)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~ 220 (347)
....- + .......+...... +.-..+++||+||+-.....+ -...+..++...+....+|+.+--+++.+.
T Consensus 96 ~~~~~----~--~~~a~~~l~~a~~~-l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 96 QNREA----D--TAACMAVWQHGKRM-LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp GGHHH----H--HHHHHHHHHHHHHH-TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CCcHH----H--HHHHHHHHHHHHHH-HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 00000 0 00011222222221 122569999999998765544 245566677665555555555555555444
Q ss_pred H
Q 019041 221 T 221 (347)
Q Consensus 221 ~ 221 (347)
.
T Consensus 169 e 169 (196)
T 1g5t_A 169 D 169 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 131
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.045 Score=41.88 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
..++++.||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999743
No 132
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.79 E-value=0.018 Score=50.61 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=35.2
Q ss_pred CcccEEEEecchhhh--c-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHh
Q 019041 173 RRVTYLVLDEADRML--D-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF 226 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~--~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~ 226 (347)
.+++++|+|++-++. . ..+...+..+.....+..-++.++|+........++.+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 468999999998643 2 22445666666666666677888888665544444443
No 133
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.65 E-value=0.0096 Score=46.51 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
.++++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999753
No 134
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.62 E-value=0.0013 Score=48.53 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhHH
Q 019041 62 LKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (347)
..+.++++.||+|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 3467899999999999963
No 135
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.60 E-value=0.0038 Score=50.19 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
.+..+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999743
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.55 E-value=0.0046 Score=53.79 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999643
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.011 Score=51.43 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
...+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999744
No 138
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.51 E-value=0.0093 Score=49.96 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=31.9
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhh--hhcCCcEEEEcCCCCchhHHh
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM--ALKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~--~~~~~~~lv~~~tGsGKT~~~ 81 (347)
.|...|+.++-.+...+.++..-. .+..+ .+.+.. +..++.+++.||+|+|||..+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~-~~~~~-~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQ-YPVEH-PDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH-HHHHC-HHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHhhC-HHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 345668887666666666664211 00000 011111 234678999999999999743
No 139
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.48 E-value=0.01 Score=49.83 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
.++++.||+|+|||.++
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999754
No 140
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.41 E-value=0.034 Score=48.88 Aligned_cols=131 Identities=21% Similarity=0.155 Sum_probs=63.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc--CcHHHHHHHHHHHHHhccCCCceEEEEECCCCCch
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA--PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
..+++.+++|+|||.+....+ ..+... +.+++++. |.+.-+. +.+..+....++.+.....+ .
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~~-------G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~--~-- 165 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQKR-------GYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQE--K-- 165 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHTT-------TCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTC--C--
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHHC-------CCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCC--C--
Confidence 357899999999997655433 333331 45566655 3333332 23333333445444222111 1
Q ss_pred hhHhhcCCCcEEEeChHHHH-HHHhcCCCCCCcccEEEEecchhhhcc-CChHHHHHHHhhcCCCccEEEEEeecchhHH
Q 019041 143 QIRDLRRGVEIVIATPGRLI-DMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVE 220 (347)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~-~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~ 220 (347)
.|..+. +.+... .-..++++|+|.+=..... .....+..+.....+..-++.+.|+......
T Consensus 166 --------------dp~~i~~~al~~a--~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 166 --------------DAIKLAKEGVDYF--KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp --------------CHHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred --------------CHHHHHHHHHHHH--HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 121111 111110 0124778888887543211 1233344444555555566777777655544
Q ss_pred HHHHHh
Q 019041 221 TLARQF 226 (347)
Q Consensus 221 ~~~~~~ 226 (347)
..++.+
T Consensus 230 ~~a~~f 235 (443)
T 3dm5_A 230 NQALAF 235 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 141
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.39 E-value=0.034 Score=45.24 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=28.2
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 27 RIFQEANFPDYCLEVIAKLG--FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 27 ~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
..|+++.-.+...+.++..- +..+..+... .+.....+++.||+|+|||..+-
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHHH
Confidence 45777655555666555421 1111111111 01234679999999999997433
No 142
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.045 Score=47.96 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=32.0
Q ss_pred CCccccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.|-..|+..+=-+...+.+++. .+..|-.++... +...+.+++.||+|+|||+.+-
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHHH
Confidence 3445688876455555555431 222222222221 1234679999999999997543
No 143
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.21 E-value=0.011 Score=50.90 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=29.3
Q ss_pred CCccccccCCCCHHHHHHHHHCCC---CCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGF---VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~---~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.|...|+.++-.+...+.+...-. ..+..++. .....+.+++.||+|+|||..+-
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG----NRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS----SCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc----CCCCCceEEEECCCCCcHHHHHH
Confidence 344567777555555555554210 01111110 11224679999999999997543
No 144
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.12 E-value=0.12 Score=41.23 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.||+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999643
No 145
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.11 E-value=0.016 Score=51.43 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
.+.+++.||+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999743
No 146
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.07 E-value=0.033 Score=47.37 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999743
No 147
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.05 E-value=0.019 Score=52.07 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=25.7
Q ss_pred CcccEEEEecchhhhccC--ChHHHHHHHhhcCCCccEEEEEeec
Q 019041 173 RRVTYLVLDEADRMLDMG--FEPQIRKIVTQIRPDRQTLYWSATW 215 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lsaT~ 215 (347)
....+|++||+|.+.... ....+..++.. ...++++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 346799999999876532 22344444444 345677777764
No 148
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.02 E-value=0.09 Score=45.24 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999644
No 149
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.02 E-value=0.075 Score=45.87 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
+..+++.||+|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999643
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.071 Score=45.58 Aligned_cols=43 Identities=9% Similarity=0.269 Sum_probs=27.3
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeecc
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP 216 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~~ 216 (347)
.+..++|+||+|.+ +......+...+........+++.|..+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 35779999999984 33344556666666555555666665543
No 151
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.91 E-value=0.011 Score=52.43 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999743
No 152
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.85 E-value=0.025 Score=48.39 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=24.8
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEeec
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT~ 215 (347)
....++++||+|.+... ....+...+........+++.+..+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeCch
Confidence 34679999999987432 2334455555554455555555433
No 153
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.76 E-value=0.058 Score=46.94 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
..++++.||+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997543
No 154
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.71 E-value=0.052 Score=47.62 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=55.2
Q ss_pred cCCCeEEEEecCcccHHHHHHHHhh---CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
..++++||.+++++-+.++++.+++ .+..+..++|+.+..++....+.+..|+.+|+|+|.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp 125 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECH
Confidence 4678999999999999999999988 578999999999998888888999999999999995
No 155
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.66 E-value=0.047 Score=48.97 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
...+++.||+|+|||.++
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999743
No 156
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.64 E-value=0.11 Score=41.16 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=17.3
Q ss_pred hhcCCcEEEEcCCCCchhHHhH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
+..|..+++.+|+|+|||..+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHH
Confidence 3456788999999999996443
No 157
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.63 E-value=0.055 Score=45.25 Aligned_cols=17 Identities=18% Similarity=-0.111 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
..++.||.|+|||.++.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997544
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.63 E-value=0.06 Score=45.35 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=23.8
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
....++|+||+|.+... ....+...+........+++.+..
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 35679999999987432 233444555554444555554433
No 159
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.58 E-value=0.039 Score=52.42 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=57.6
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec-ccccCCCCCc
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VAARGLGRIT 345 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~ 345 (347)
.+.+++|.++++.-+.+.++.+.+ .|+.+..++|+++..++...++.+.+|+.+|+|+|. .+...++..+
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~ 490 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 490 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSC
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccC
Confidence 467999999999999888877754 478999999999999999999999999999999994 3333444443
No 160
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.52 E-value=0.025 Score=47.92 Aligned_cols=51 Identities=24% Similarity=0.066 Sum_probs=30.7
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
+..|.-+++.|++|+|||..++-.+...... +..++|++.- .-..|+...+
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--------g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND--------DRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCEEEEEESS-SCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCC-CCHHHHHHHH
Confidence 4556779999999999996444333333322 5578887642 2234444443
No 161
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.016 Score=50.90 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=36.8
Q ss_pred CCccccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.|..+|+..+--+...+.+++. .+..|-.++...+ ...+.+++.||+|+|||+.+-
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHHH
Confidence 5666799988777777777652 2333333333222 234689999999999997543
No 162
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.35 E-value=0.057 Score=45.53 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999743
No 163
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=95.18 E-value=0.13 Score=45.91 Aligned_cols=57 Identities=11% Similarity=0.013 Sum_probs=42.3
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCCc
Q 019041 277 GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRIT 345 (347)
Q Consensus 277 ~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 345 (347)
+.++++.|.+...++.+.+.|.+.|+......+. . .+..| .|.|+...++.|+-.|+
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~~g--~v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EASDR--GRYLMIGAAEHGFVDTV 438 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCCTT--CEEEEESCCCSCEEETT
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcCCC--cEEEEEcccccCcccCC
Confidence 5799999999999999999999988876544321 0 12223 57777778899998775
No 164
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.14 E-value=0.14 Score=43.52 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=23.9
Q ss_pred CcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEE
Q 019041 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (347)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ls 212 (347)
....++|+||+|.+... ....+...++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999987432 2344555555554455555444
No 165
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.12 E-value=0.074 Score=50.50 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=35.2
Q ss_pred CCccccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLG---FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.|...|+..+.-+...+.|++.- +..|..++... +...+.+++.||+|+|||+.+-
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHHH
Confidence 55667888887788888877632 22222211111 1234679999999999997433
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.07 E-value=0.064 Score=46.90 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=14.0
Q ss_pred CcEEE--EcCCCCchhHHh
Q 019041 65 RDLIG--IAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv--~~~tGsGKT~~~ 81 (347)
..+++ .||+|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46788 899999999743
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.04 E-value=0.12 Score=45.89 Aligned_cols=41 Identities=20% Similarity=0.038 Sum_probs=26.0
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
+..|.-+++.|++|+|||..++..+....... +..++++..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEEC
Confidence 34567789999999999964443333333221 345777764
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.03 E-value=0.089 Score=46.66 Aligned_cols=41 Identities=24% Similarity=-0.019 Sum_probs=25.7
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
+..|.-+++.|++|+|||..++-.+....... +.+++++..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-------g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKE-------GVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-------CCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEEC
Confidence 33456789999999999964443333333221 445777764
No 169
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.98 E-value=0.073 Score=44.73 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=22.6
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
...++|+||+|.+.... ...+...+........+++.|..
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeCC
Confidence 36799999999864321 22334444444444555555433
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.85 E-value=1.2 Score=37.65 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=28.2
Q ss_pred hHHHHHHHhcCCCCCCcccEEEEecchhhhc---cCChHHHHHHHhhcCCCccEEEEEee
Q 019041 158 PGRLIDMLEAQHTNLRRVTYLVLDEADRMLD---MGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~---~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
.+.+...+..... ..-+||+||+|.+.. ..+...+..+.... +... +.++++
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~i~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIK-FIMSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEE-EEEEES
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeE-EEEEcC
Confidence 4445554443211 244899999998864 34555666555543 2333 444444
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.58 E-value=0.065 Score=55.80 Aligned_cols=41 Identities=22% Similarity=0.145 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
++++++.+|+|+|||..+...+.+...+ +.+++++.....+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~--------G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAEHAL 1467 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTTSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEccccc
Confidence 6789999999999998766555544433 5678888766444
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.56 E-value=0.11 Score=43.63 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999643
No 173
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.44 E-value=0.19 Score=41.40 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.2
Q ss_pred hhhcCCcEEEEcCCCCchhHHhHH
Q 019041 60 MALKGRDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~~~~ 83 (347)
-+..|.-+++.+|+|+|||..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHH
Confidence 456788899999999999975443
No 174
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.38 E-value=0.034 Score=48.83 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=33.1
Q ss_pred CCccccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.|-..|+..+=-+...+.+++. .+..|-.++... +...+.+++.||+|+|||+.+-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHH
Confidence 4556688876555555555542 222222222222 1234789999999999997543
No 175
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.048 Score=47.97 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=34.1
Q ss_pred CCccccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLG---FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.|-..|+..+=-+...+.|++.= +..|-.++... +...+.+|+.||+|+|||+.+-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHHH
Confidence 45567888876666777776532 22222222111 1335789999999999997543
No 176
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.14 E-value=0.14 Score=50.87 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=55.1
Q ss_pred cCCCeEEEEecCcccHHHHHHHHhh---CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
..+.++||.+++++-+.++++.+++ .+..+..++|+.+..++....+.+..|+.+|+|+|.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp 182 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 182 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECH
Confidence 4678999999999999999999988 567899999999998888889999999999999994
No 177
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.93 E-value=0.046 Score=40.06 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCCchhHHh
Q 019041 62 LKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~ 81 (347)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34678999999999999743
No 178
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.81 E-value=0.14 Score=42.66 Aligned_cols=42 Identities=14% Similarity=-0.065 Sum_probs=27.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 113 (347)
.+++.+|+|+|||..++..+....... .+.+++++..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g------~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY------PDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC------TTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC------CCceEEEEeccchhh
Confidence 678999999999976554444433321 145788888765553
No 179
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.64 E-value=0.14 Score=49.50 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
.++++.||+|+|||.. +-.+...+
T Consensus 192 ~~vlL~G~pG~GKT~l-a~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI-VEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHH-HHHHHHHH
T ss_pred CceEEEcCCCCCHHHH-HHHHHHHH
Confidence 5799999999999964 33333443
No 180
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.073 Score=46.37 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=33.7
Q ss_pred CCccccccCCCCHHHHHHHHH---CCCCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 24 RPIRIFQEANFPDYCLEVIAK---LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~---~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.|-..|+..+=-+...+.+++ +.+..|-.++...+ ...+.+++.||+|+|||+.+-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH
Confidence 456678887644555555543 23333433333222 234679999999999997543
No 181
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.33 E-value=0.15 Score=43.69 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=19.5
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
..+..+++.||||||||. .+..++..+.
T Consensus 121 ~~~g~i~I~GptGSGKTT-lL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKST-TLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHH-HHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHH-HHHHHHhccc
Confidence 345578999999999996 3444444443
No 182
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.23 E-value=0.094 Score=42.11 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=31.9
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..|.-+++.||+|+|||..+...+...... +..++++.... ...++.+.+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--------~~~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM--------GEPGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT--------TCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEccC-CHHHHHHHHHHc
Confidence 456788999999999997544333333322 44577776432 235555555443
No 183
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.19 E-value=1.5 Score=36.32 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHH
Q 019041 63 KGRDLIGIAETGSGKTLSYLLP 84 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~ 84 (347)
.++.+.+.++.|+|||.++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~l 118 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4556778899999999755433
No 184
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.19 E-value=0.09 Score=44.06 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 019041 64 GRDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~ 83 (347)
+.++++.||+|+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999975443
No 185
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.14 E-value=0.18 Score=45.40 Aligned_cols=47 Identities=19% Similarity=0.000 Sum_probs=29.1
Q ss_pred HHHHHHCCCCCCcHHHHhhHh-hhhcCCcEEEEcCCCCchhHHhHHHHHHh
Q 019041 39 LEVIAKLGFVEPTPIQAQGWP-MALKGRDLIGIAETGSGKTLSYLLPAFVH 88 (347)
Q Consensus 39 ~~~l~~~~~~~~~~~Q~~~i~-~~~~~~~~lv~~~tGsGKT~~~~~~~~~~ 88 (347)
...+...|. +.+.+...+. .+..|..+++.||||||||.+ +..++..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl-L~aL~~~ 283 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT-LNAIMMF 283 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH-HHHHGGG
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 445556663 2333334443 345688999999999999963 4444433
No 186
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.89 E-value=0.2 Score=45.68 Aligned_cols=19 Identities=37% Similarity=0.254 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
.+..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999743
No 187
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.89 E-value=0.15 Score=44.68 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=22.5
Q ss_pred HHHhhHhhhh--cCCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 53 IQAQGWPMAL--KGRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 53 ~Q~~~i~~~~--~~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
.+..++..+. .+..+++.||||||||.+ +..++..+
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 3444444433 345689999999999963 44444443
No 188
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.85 E-value=0.24 Score=47.05 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHH
Q 019041 64 GRDLIGIAETGSGKTLS 80 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (347)
.+.+++.||+|+|||+.
T Consensus 238 p~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 36799999999999974
No 189
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=92.60 E-value=0.22 Score=50.04 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=31.0
Q ss_pred EEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHH
Q 019041 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (347)
Q Consensus 68 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 113 (347)
+|.|+.|||||.+.+.-+...+.+.. .+.++|++||....-
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~-----~~~~il~lVP~q~TF 45 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP-----FGKPIIFLVPDQMTF 45 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT-----TSSCEEEECCGGGHH
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEecCcccH
Confidence 78999999999987766666665533 246899999987543
No 190
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.59 E-value=0.82 Score=43.53 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
..++++.||+|+|||.++
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999643
No 191
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.27 E-value=0.49 Score=47.26 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=57.7
Q ss_pred hcCCCeEEEEecCcccHHHHHHHHhh----CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEe-cccccCCCCC
Q 019041 274 VMDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAARGLGRI 344 (347)
Q Consensus 274 ~~~~~~~lvf~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidip 344 (347)
...+++++|.+++..-+.+.++.+.+ .+..+..+++..+..++...++.+..|+.+|+|+| ..+...+...
T Consensus 649 ~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~ 724 (1151)
T 2eyq_A 649 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 724 (1151)
T ss_dssp HTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCS
T ss_pred HHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccc
Confidence 34577999999999999988888764 35778899999999999999999999999999999 4444444443
No 192
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.12 E-value=2.9 Score=35.12 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=34.7
Q ss_pred cccEEEEecchhhhc-cCChHHHHHHHhhcCCCccEEEEEeecchhHHHHHHHh
Q 019041 174 RVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF 226 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lsaT~~~~~~~~~~~~ 226 (347)
..+++++|.+-.... ......+..+.+.+.+...++.+.++.........+.+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 466888998875432 22445555566666677788899988776665555544
No 193
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.93 E-value=0.38 Score=43.60 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=54.7
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 277 GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 277 ~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
++++||.++.+.-+.+..+.|++.|..+..+++..+..++..+.+.+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999888889999999999999994
No 194
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.83 E-value=0.19 Score=39.35 Aligned_cols=34 Identities=24% Similarity=0.126 Sum_probs=27.5
Q ss_pred CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
+..-+..|..+++.+..|.-+.+.+|.|+|||..
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3344556778888888899999999999999963
No 195
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.67 E-value=0.55 Score=43.20 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=53.8
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHH--hcCCCCEEEEec
Q 019041 277 GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEF--RSGRSPIMTATD 335 (347)
Q Consensus 277 ~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vlv~T~ 335 (347)
.+++||.+++++-+.+..+.|.+.|+.+..++|+.+..++..++..+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 57999999999999999999999999999999999999988888888 467899999996
No 196
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.54 E-value=0.71 Score=38.31 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999743
No 197
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=91.35 E-value=0.59 Score=39.06 Aligned_cols=73 Identities=12% Similarity=-0.002 Sum_probs=50.4
Q ss_pred HHHHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Q 019041 265 CRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLGRI 344 (347)
Q Consensus 265 ~~l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 344 (347)
..++..+.+ .++++|||++......-+.+++...|+....+.|.....+++ -..+...+.+.|+...-|+|.|
T Consensus 115 ~~LL~~l~~--~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~gin~~ 187 (328)
T 3hgt_A 115 RDLINLVQE--YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINFTKYP 187 (328)
T ss_dssp HHHHHHHTT--SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSC
T ss_pred HHHHHHHHh--CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCCcCcc
Confidence 344444433 577999999999999999999999999999999985543221 1234455666677777778754
No 198
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.32 E-value=0.36 Score=46.26 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.++.+++.||+|+|||..
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 467899999999999964
No 199
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=91.14 E-value=0.26 Score=43.51 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=30.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHH
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 114 (347)
...++++.|+||+|||..+ ..++..+... +..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 3578999999999999764 3334333332 556888888877754
No 200
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.10 E-value=0.15 Score=40.97 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=30.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 122 (347)
.|.-+++.|++|+|||..++-.+.+.+.+. +..+++++-. +-..++.+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHH
Confidence 456789999999999965444344333321 3457776642 234444555544
No 201
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.91 E-value=0.58 Score=36.67 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=44.0
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC-----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 277 GSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 277 ~~~~lvf~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
+.++||.+++++-+.++++.+++. +..+..++|+.+..... +.+..+..+|+|+|.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTP 142 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCH
Confidence 348999999999999998887654 67888899988765543 344557789999994
No 202
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.77 E-value=0.28 Score=41.23 Aligned_cols=52 Identities=13% Similarity=-0.060 Sum_probs=31.1
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 121 (347)
+..|.-+++.|++|+|||..++..+.....+ +..+++++-- .-..|+...+.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN--------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT--------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--------CCeEEEEECC-CCHHHHHHHHH
Confidence 4456779999999999996444433333322 3568887643 33344444443
No 203
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.69 E-value=0.26 Score=38.88 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=18.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
++++.++.|.|||.+++..+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 6899999999999876655544443
No 204
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.55 E-value=0.09 Score=44.38 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=31.2
Q ss_pred CccccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHh
Q 019041 25 PIRIFQEANFPDYCLEVIAKLG---FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (347)
|...|+.++=.+...+.|+..- ...+..++ ......+.+++.||+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHHH
Confidence 4567888876666666665421 11111111 01123467999999999999743
No 205
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.53 E-value=0.13 Score=39.02 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
+..+++.|++|+|||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999743
No 206
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.50 E-value=1.7 Score=32.19 Aligned_cols=74 Identities=15% Similarity=0.281 Sum_probs=52.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..... ..+. ....|+|+|. .....+++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCchhcC
Confidence 457999999999999998888774 67888899887654432 2222 3478999993 33445667778
Q ss_pred cEEEEecc
Q 019041 176 TYLVLDEA 183 (347)
Q Consensus 176 ~~iIvDE~ 183 (347)
+++|.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876443
No 207
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.35 E-value=0.46 Score=35.92 Aligned_cols=120 Identities=11% Similarity=0.115 Sum_probs=68.5
Q ss_pred cHHHHhhHhhhhcC--CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCC
Q 019041 51 TPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (347)
Q Consensus 51 ~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 128 (347)
.+-|..++..+... .-.++.++-|++|+...+..++..... .|.++.+|+|+..-..+..+.. +
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~~l~~~~-------~ 101 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQMNMKQDE-------R 101 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHHHHSCTT-------T
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHHHHHhhc-------C
Confidence 35688888877543 457789999999998744433333222 2778999999976654322221 1
Q ss_pred ceEEEEECCCCCchhhHhhcCCCcEEEeChHHHHHHHhcCCCCCCcccEEEEecchhhhccCChHHHHHHHhhc-CCCcc
Q 019041 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQ 207 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~ 207 (347)
..-..+ |- ..+......+..-+.+||||+..+... .+..++... ..+.|
T Consensus 102 l~~~t~----------------------t~----~~ll~~~~~~tp~s~lIVD~AekLS~k----E~~~Lld~A~~~naq 151 (189)
T 2l8b_A 102 LSGELI----------------------TG----RRQLLEGMAFTPGSTVIVDQGEKLSLK----ETLTLLDGAARHNVQ 151 (189)
T ss_dssp CSSCSS----------------------ST----TTTTTTSCCCCCCCEEEEEESSSHHHH----HHHHHHHHHHHTTCC
T ss_pred cCccee----------------------eh----hhhhcCCCCCCCCCEEEEechhhcCHH----HHHHHHHHHHhcCCE
Confidence 111000 10 001122222345569999999987443 333333332 24578
Q ss_pred EEEEEee
Q 019041 208 TLYWSAT 214 (347)
Q Consensus 208 ~i~lsaT 214 (347)
++++.-+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8888766
No 208
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.30 E-value=0.17 Score=39.14 Aligned_cols=21 Identities=19% Similarity=-0.040 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCCchhHHhH
Q 019041 62 LKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~ 82 (347)
..++.+++.|++|+|||..+-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 456789999999999997433
No 209
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.23 E-value=0.41 Score=36.33 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=23.2
Q ss_pred EEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
++|.|++|||||. +...+... +..++++......-.++.+.+...
T Consensus 2 ilV~Gg~~SGKS~-~A~~la~~-----------~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSR-HAEALIGD-----------APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHH-HHHHHHCS-----------CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHH-HHHHHHhc-----------CCCeEEEecCCCCCHHHHHHHHHH
Confidence 6899999999995 44322221 123677776544434444444433
No 210
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.19 E-value=0.088 Score=43.30 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=27.0
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHH-HHhhHhhh--hcCCcEEEEcCCCCchhHH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPI-QAQGWPMA--LKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~-Q~~~i~~~--~~~~~~lv~~~tGsGKT~~ 80 (347)
.|...|+.++--+.+.+.++..-. .++ ...++..+ .-.+.+++.||+|+|||..
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp --------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 355678888777777777765221 111 12223221 1234499999999999963
No 211
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=90.11 E-value=1 Score=30.16 Aligned_cols=46 Identities=17% Similarity=0.388 Sum_probs=36.3
Q ss_pred EEEEecCcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhc
Q 019041 280 ILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 325 (347)
Q Consensus 280 ~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 325 (347)
.+||.+.-+-...+.+.+++.|..+..++++.....|...++.|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 4677777777778888888888888888888888777777777764
No 212
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.11 E-value=0.33 Score=49.93 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=53.6
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (347)
+-+.+.+|.|||||..++..+.+. .+. +..++++.+-.++-..+ +++++-..+
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~-~~~-------g~~~~~i~~e~~~~~~~---~~~~Gv~~~---------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAA-QRE-------GKTCAFIDAEHALDPIY---ARKLGVDID---------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH-HHT-------TCCEEEECTTSCCCHHH---HHHTTCCGG----------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH-Hhc-------CCeEEEEecCCCCCHHH---HHHcCCCHH----------------
Confidence 568899999999997655444333 332 66788988877775554 555433222
Q ss_pred HhhcCCCcEEEeCh---HHHHHHHhcCCCCCCcccEEEEecchhhhc
Q 019041 145 RDLRRGVEIVIATP---GRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (347)
Q Consensus 145 ~~~~~~~~iiv~T~---~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (347)
++++.-| ++.+...+..- .-..+++||||.+-.+..
T Consensus 1485 -------~l~~~~p~~~e~~l~~~~~~~-~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 -------NLLCSQPDTGEQALEICDALA-RSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -------GCEEECCSSHHHHHHHHHHHH-HHTCCSEEEESCSTTCCC
T ss_pred -------HeEEeCCCcHHHHHHHHHHHH-HcCCCCEEEEccHHhCCc
Confidence 2444444 33333322211 114588999999987654
No 213
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.04 E-value=0.34 Score=42.03 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=28.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
.+.++++.||||+|||...-. ++..+... +.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~-------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQ-------GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTT-------TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHC-------CCEEEEEeCCcCH
Confidence 567899999999999965433 33333321 5567777776543
No 214
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.93 E-value=0.16 Score=41.32 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=17.0
Q ss_pred hhcCCcEEEEcCCCCchhHH
Q 019041 61 ALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (347)
+..|..+++.||+|+|||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45677899999999999964
No 215
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.88 E-value=0.2 Score=37.97 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCchhHHhH
Q 019041 62 LKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~ 82 (347)
..++.+++.|++|+|||..+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999997433
No 216
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.85 E-value=0.27 Score=41.55 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+..|+.+.+.||+|+|||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4568899999999999996
No 217
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.82 E-value=1.6 Score=34.98 Aligned_cols=61 Identities=23% Similarity=0.232 Sum_probs=44.5
Q ss_pred HHhhcCCCeEEEEecCcccHHHHHHHHhhC----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 271 LKEVMDGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 271 ~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
+.....+.++||.+++++-+.++++.+++. +..+..++|+.+.......+ .+..+|+|+|.
T Consensus 105 l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp 169 (249)
T 3ber_A 105 LLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATP 169 (249)
T ss_dssp HHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECH
T ss_pred HhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECH
Confidence 333334568999999999999998877653 78888899988765443332 25679999994
No 218
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=89.78 E-value=0.7 Score=46.40 Aligned_cols=58 Identities=14% Similarity=0.025 Sum_probs=41.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCC----ccCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPR----LVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 123 (347)
..+|.|+.|||||.+....++..+..... ...-.-.++|+||=|++=+.++.+.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 45999999999999888777777754210 00001347999999999998888877653
No 219
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.71 E-value=0.55 Score=40.21 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 019041 63 KGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (347)
...++++.||+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999997443
No 220
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.61 E-value=2.5 Score=31.69 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=51.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
..++||.|+++..+..+.+.+.+. ++.+..++|+.+..... ..+. ...+|+|+|. .....+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccC
Confidence 568999999999999988888763 67788899887654432 2222 3578999993 33445567788
Q ss_pred cEEEEe
Q 019041 176 TYLVLD 181 (347)
Q Consensus 176 ~~iIvD 181 (347)
+++|.-
T Consensus 104 ~~Vi~~ 109 (175)
T 2rb4_A 104 TIVVNF 109 (175)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 888853
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.51 E-value=3.2 Score=37.17 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=22.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
.+++.+++|+|||.++...+ ..+... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~~-------G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQRK-------GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHHT-------TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHhC-------CCeEEEEec
Confidence 57889999999997654433 333321 445666654
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.40 E-value=0.23 Score=37.78 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.|+-+++.||+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999963
No 223
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.36 E-value=0.18 Score=42.49 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
+.+++.||||+|||..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997544
No 224
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.21 E-value=4.3 Score=35.47 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 019041 64 GRDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~ 83 (347)
++.+.+.++.|+|||.+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34577889999999975543
No 225
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.18 E-value=0.17 Score=39.28 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.||+|+|||..+
T Consensus 60 ~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 60 CLVFCGPANTGKSYFG 75 (212)
T ss_dssp EEEEESCGGGCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999643
No 226
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.15 E-value=0.2 Score=40.55 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=31.3
Q ss_pred CCccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhh--hcCCcEEEEcCCCCchhHH
Q 019041 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMA--LKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~--~~~~~~lv~~~tGsGKT~~ 80 (347)
.|...|+++.-.+.....+++.-.. . .....+..+ .-.+.+++.||+|+|||..
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 4556788876666666666543210 0 011223221 1134599999999999964
No 227
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.15 E-value=0.2 Score=38.64 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
++-+++.+|||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5668999999999996433
No 228
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.15 E-value=0.27 Score=36.88 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHH
Q 019041 64 GRDLIGIAETGSGKTLS 80 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (347)
+..+.+.||+|+|||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999974
No 229
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.09 E-value=0.2 Score=41.79 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
.+-+++.||||+|||..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 3457899999999996544
No 230
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.07 E-value=0.22 Score=42.09 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=18.4
Q ss_pred hhhhcCCcEEEEcCCCCchhHHh
Q 019041 59 PMALKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 59 ~~~~~~~~~lv~~~tGsGKT~~~ 81 (347)
..+..+.++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456789999999999999743
No 231
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.04 E-value=0.3 Score=39.76 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.+.++++.||+|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 457899999999999974
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.04 E-value=0.25 Score=37.64 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
.+.+++.|++|+|||.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999997544
No 233
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.03 E-value=0.25 Score=38.26 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.3
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.|+-+.+.||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467889999999999963
No 234
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.03 E-value=2.2 Score=31.58 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=52.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||.|+++.-+..+.+.+.+. ++.+..++++.+..... ..+. ....|+|+|. .....+++.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcccC
Confidence 557999999999999988888764 67788888887654432 2222 3478999993 23445567778
Q ss_pred cEEEEecc
Q 019041 176 TYLVLDEA 183 (347)
Q Consensus 176 ~~iIvDE~ 183 (347)
+++|.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876443
No 235
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.01 E-value=0.52 Score=40.34 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999997433
No 236
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.89 E-value=0.25 Score=42.35 Aligned_cols=20 Identities=40% Similarity=0.416 Sum_probs=17.4
Q ss_pred hhhcCCcEEEEcCCCCchhH
Q 019041 60 MALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~ 79 (347)
.+..|+.+++.||||+|||.
T Consensus 171 ~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHH
T ss_pred HHhcCCEEEEECCCCCCHHH
Confidence 35578999999999999996
No 237
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.89 E-value=0.21 Score=44.78 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=20.3
Q ss_pred HhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 55 AQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 55 ~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
..+...+..+.++++.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 33444556688999999999999974
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.82 E-value=0.49 Score=37.00 Aligned_cols=36 Identities=22% Similarity=0.092 Sum_probs=24.0
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
..|.-+++.+|+|+|||..+...+. .. +..++++.-
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~--------~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LS--------GKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HH--------CSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---Hc--------CCcEEEEEC
Confidence 3467789999999999975443332 11 456777764
No 239
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.75 E-value=0.27 Score=38.18 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.0
Q ss_pred hhcCCcEEEEcCCCCchhHH
Q 019041 61 ALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (347)
+..++-+++.||+|+|||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 45678899999999999963
No 240
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.71 E-value=2.2 Score=32.64 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=51.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhh-cCCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||+|+++.-+..+.+.+... ++.+..++|+.+..+.. ..+ .....|+|+|. .....+++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------~~~~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD------VASKGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH------HHHTTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC------chhcCCCcccC
Confidence 447999999999999998888764 67788899887654432 222 23578999993 22335567778
Q ss_pred cEEEEec
Q 019041 176 TYLVLDE 182 (347)
Q Consensus 176 ~~iIvDE 182 (347)
+++|.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8877633
No 241
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.68 E-value=0.43 Score=42.17 Aligned_cols=40 Identities=18% Similarity=-0.009 Sum_probs=26.6
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcC
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p 108 (347)
+..|.-+++.|++|+|||..++-.+.....+ +.++++++-
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~--------g~~vl~fSl 233 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN--------DDVVNLHSL 233 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--------TCEEEEECS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--------CCEEEEEEC
Confidence 3445679999999999996544444433332 456888764
No 242
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.67 E-value=0.41 Score=40.92 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=26.1
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 109 (347)
.+.-+++.+++|+|||..++..+...... +.+++++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--------g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEeCC
Confidence 45678999999999997555444433322 4467777753
No 243
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.62 E-value=1.1 Score=35.49 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=42.8
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC-----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.+++++-+.++++.+++. +..+..++|+.+..++...+ .+.+|+|+|.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 4569999999999999999888753 66788889988866554332 3578999994
No 244
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=88.61 E-value=5.2 Score=29.79 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||.|+++.-+..+.+.+... ++.+..++++....... ..+. ....|+|+|. .....+++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhhC
Confidence 457999999999999988888774 67788888887654432 2222 3578999994 23345567778
Q ss_pred cEEEEecc
Q 019041 176 TYLVLDEA 183 (347)
Q Consensus 176 ~~iIvDE~ 183 (347)
+++|.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 88876443
No 245
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.57 E-value=0.39 Score=39.02 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=28.3
Q ss_pred HHHHHHHHHCCCCCCcHHH-HhhHhhhhcCC-----cEEEEcCCCCchhHHhH
Q 019041 36 DYCLEVIAKLGFVEPTPIQ-AQGWPMALKGR-----DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 36 ~~~~~~l~~~~~~~~~~~Q-~~~i~~~~~~~-----~~lv~~~tGsGKT~~~~ 82 (347)
..+.+-|+..|++ +.+ ..++..+++++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3566677777764 323 22244555543 48999999999997544
No 246
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.54 E-value=2.2 Score=33.25 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=52.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||.|+++.-++.+.+.+... ++.+..++|+.+..... ..+. ...+|+|+|. .....+++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccC
Confidence 457999999999999988888764 77888899987655442 2222 3478999993 33446677788
Q ss_pred cEEEE
Q 019041 176 TYLVL 180 (347)
Q Consensus 176 ~~iIv 180 (347)
+++|.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88875
No 247
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.53 E-value=0.31 Score=40.46 Aligned_cols=18 Identities=22% Similarity=0.076 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
..+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997433
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.52 E-value=0.28 Score=38.27 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.|.-+++.||+|+|||.+
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466788999999999964
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.33 E-value=0.49 Score=39.26 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPA 85 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~ 85 (347)
++.+.+.+|+|+|||.+....+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999997655433
No 250
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.29 E-value=0.21 Score=37.46 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.||+|||||..+
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999743
No 251
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.27 E-value=0.54 Score=38.88 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=31.0
Q ss_pred CccccccCCCCHHHHHHHHHCCCCCCcHHH-HhhHhhh-hcCCcEEEEcCCCCchhHHh
Q 019041 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQ-AQGWPMA-LKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~~-~~~~~~lv~~~tGsGKT~~~ 81 (347)
|...|+.+.=.+...+.+...-. .+.. .+.+..+ ...+.+++.||+|+|||..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 45568887656666666654211 0000 0111111 23578999999999999743
No 252
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.23 E-value=0.29 Score=37.32 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchhHH
Q 019041 64 GRDLIGIAETGSGKTLS 80 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (347)
+..+++.|++|+|||..
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56789999999999964
No 253
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=88.22 E-value=0.3 Score=37.84 Aligned_cols=19 Identities=37% Similarity=0.281 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCCchhHH
Q 019041 62 LKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (347)
..|.-+.+.||+|+|||..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 4577788999999999963
No 254
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.19 E-value=0.42 Score=40.75 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=25.5
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 109 (347)
.|.-+++.+|+|+|||..++..+...... +.+++++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--------g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--------GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECC
Confidence 45678999999999997544433333222 4467777644
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.15 E-value=0.21 Score=38.07 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 019041 63 KGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (347)
.+..+++.|++|||||..+-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45578999999999997433
No 256
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.15 E-value=0.14 Score=41.79 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4569999999999997543
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.13 E-value=0.31 Score=37.81 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhHH
Q 019041 62 LKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (347)
..|.-+.+.||+|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577889999999999963
No 258
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=88.03 E-value=0.3 Score=41.65 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=19.0
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
+++.+++|.| ++.-|.||||||.+..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 4455667876 5567799999998753
No 259
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=88.01 E-value=0.61 Score=31.95 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCCC
Q 019041 267 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 312 (347)
Q Consensus 267 l~~~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 312 (347)
+.+.+.....++++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3344445556779999999988899999999999999899988643
No 260
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.97 E-value=0.55 Score=37.92 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=29.2
Q ss_pred CccccccCCCCHHHHHHHHHCC--CCCCcHHHHhhHhhhhcCCcEEEEcCCCCchhHHh
Q 019041 25 PIRIFQEANFPDYCLEVIAKLG--FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (347)
+...|+++.-.+...+.+...- +..+..++... ....+.+++.||+|+|||..+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 3456888766666666555321 11111111100 112356999999999999743
No 261
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.95 E-value=0.33 Score=37.02 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
.+..+++.|++|+|||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4568999999999999743
No 262
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=87.90 E-value=0.23 Score=38.05 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=16.4
Q ss_pred hhcCCcEEEEcCCCCchhHH
Q 019041 61 ALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (347)
+.+|..+++.||+|+|||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34567789999999999963
No 263
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.85 E-value=0.72 Score=40.94 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
++++++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999997544
No 264
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.65 E-value=0.31 Score=40.57 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
-+++.||||+|||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47889999999997544
No 265
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=87.45 E-value=0.37 Score=37.34 Aligned_cols=22 Identities=27% Similarity=0.153 Sum_probs=16.3
Q ss_pred cEEEEcCCCCchhHHhHHHHHH
Q 019041 66 DLIGIAETGSGKTLSYLLPAFV 87 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~ 87 (347)
-.++.|++|||||..+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999865544333
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.31 E-value=0.33 Score=39.30 Aligned_cols=17 Identities=29% Similarity=0.040 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
.+++.||+|||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 46899999999997443
No 267
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.19 E-value=1.5 Score=35.00 Aligned_cols=56 Identities=21% Similarity=0.160 Sum_probs=43.2
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.+++++-+.++++.+++ .+..+..++|+.+.......++ ...+|+|+|.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp 160 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATP 160 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECH
Confidence 356899999999999998877764 4788889999888766544432 2478999994
No 268
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.18 E-value=0.36 Score=37.35 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
.+..+++.|++|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999643
No 269
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.13 E-value=0.4 Score=37.07 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhHH
Q 019041 62 LKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (347)
+.|+-+++.||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3677889999999999963
No 270
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=87.12 E-value=0.4 Score=40.27 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=19.6
Q ss_pred hhHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 56 QGWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 56 ~~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
.+++.+++|.| ++.-|.||||||.+..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 34455667876 5677899999998753
No 271
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.03 E-value=0.29 Score=42.15 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=19.8
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
+..+..+++.||||+|||.+ +..++..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl-l~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT-IASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH-HHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH-HHHHHhhc
Confidence 34577899999999999963 43344433
No 272
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.02 E-value=0.32 Score=39.92 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=31.3
Q ss_pred CccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHhhh--hcCCcEEEEcCCCCchhHH
Q 019041 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMA--LKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~--~~~~~~lv~~~tGsGKT~~ 80 (347)
|...|+++.-.+...+.++..-.. . .....+..+ .-.+.+++.+|+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 556688887777776666643210 0 011222221 1124599999999999964
No 273
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.84 E-value=0.56 Score=40.22 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 110 (347)
|.-+++.+++|+|||..++..+. .+... +.+++|+..-.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~-~~~~~-------g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVA-QAQKA-------GGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH-HHHHT-------TCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHH-HHHHC-------CCeEEEEECCC
Confidence 46788999999999975444333 33321 44677776543
No 274
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.76 E-value=0.67 Score=39.61 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 275
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=86.63 E-value=0.48 Score=36.29 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=17.4
Q ss_pred hhcCCcEEEEcCCCCchhHHhH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
+.++..+++.|++|||||..+-
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHH
Confidence 4456789999999999997443
No 276
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=86.62 E-value=0.44 Score=40.57 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=19.0
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
+++.+++|.| ++.-|.||||||.+..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEee
Confidence 3445667876 5667899999998753
No 277
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.51 E-value=0.46 Score=40.49 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l 112 (347)
|.-+++.+|+|+|||..+. .++..+... +.+++++.....+
T Consensus 61 G~i~~I~GppGsGKSTLal-~la~~~~~~-------gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLAL-HAIAEAQKM-------GGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHH-HHHHHHHHT-------TCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEEeccccc
Confidence 4578899999999996444 343333321 4567787665443
No 278
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=86.49 E-value=0.45 Score=40.39 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=18.3
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHh
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (347)
+++.+++|.| ++.-|.||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3444567776 566789999999875
No 279
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=86.41 E-value=0.5 Score=40.10 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=20.0
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
+++.+++|.| ++.-|.||||||.+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 5666778877 4567899999998754
No 280
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=86.40 E-value=0.44 Score=40.38 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=18.3
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHh
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (347)
+++.+++|.| ++.-|.||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3444566776 567789999999874
No 281
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=86.25 E-value=0.48 Score=39.92 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=20.4
Q ss_pred hhHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 56 QGWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 56 ~~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
.++..+++|.| ++.-|.||||||.+..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 35666778876 5567899999998753
No 282
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=86.23 E-value=0.47 Score=40.61 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=19.0
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
+++.+++|.| ++.-|.||||||.+..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 4455667876 5567799999998753
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.19 E-value=0.42 Score=35.68 Aligned_cols=16 Identities=13% Similarity=-0.230 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.|++|+|||.++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999743
No 284
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=86.16 E-value=0.53 Score=40.03 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=20.2
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
+++.+++|.| ++.-|.||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 5666778877 4567899999998753
No 285
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.12 E-value=2.5 Score=32.12 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=43.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchh---hHhh-cCCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDL-RRGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+.... ...+ .....|+|+|. .....+++.++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA------VAARGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC------hhhcCCCcccC
Confidence 567999999999999988888764 6778888887655433 2222 23578999993 12234456677
Q ss_pred cEEEE
Q 019041 176 TYLVL 180 (347)
Q Consensus 176 ~~iIv 180 (347)
+++|.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77776
No 286
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=86.09 E-value=0.47 Score=40.84 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=17.6
Q ss_pred hhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 59 PMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
+.+++|.| ++.-|.||||||.+..
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred HHhhcCceeeEeeecCCCCCCCeEee
Confidence 34566776 5567899999998753
No 287
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=86.08 E-value=0.45 Score=40.76 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=19.3
Q ss_pred hhHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 56 QGWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 56 ~~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
.+++.+++|.| ++.-|.||||||.+..
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 34455667876 4567799999998743
No 288
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.07 E-value=0.69 Score=38.55 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 019041 65 RDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~ 83 (347)
+-+.+.+|+|+|||.+...
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 4577999999999975543
No 289
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=86.05 E-value=0.49 Score=40.32 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=18.2
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHh
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (347)
+++.+++|.| ++.-|.||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3444567776 567789999999875
No 290
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=86.05 E-value=0.46 Score=41.19 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=18.9
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
+++.+++|.| ++.-|.||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 4445667876 5567799999998754
No 291
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=86.05 E-value=0.51 Score=39.35 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
...++++.|++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3578999999999999743
No 292
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.03 E-value=0.76 Score=38.04 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=17.7
Q ss_pred hhcCCcEEEEcCCCCchhHHhH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
+..|.-+++.||+|+|||..+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 4567889999999999996433
No 293
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.98 E-value=1.9 Score=37.01 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=44.8
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC-----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.|+++.-+.++++.+++. +..+..++|+.+..... +.+..+..+|+|+|.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~iiv~T~ 136 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTP 136 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH---HHHHHSCCSEEEECH
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH---HHHhcCCCCEEEECH
Confidence 3558999999999999998888754 67888999988865544 344557789999994
No 294
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=85.95 E-value=0.46 Score=40.35 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=18.9
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
+++.+++|.+ ++.-|+||||||.+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 4455667776 5567799999998753
No 295
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=85.94 E-value=0.45 Score=35.87 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999743
No 296
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=85.84 E-value=0.54 Score=40.18 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=18.5
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHh
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (347)
+++.+++|.| ++.-|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4445567876 566789999999874
No 297
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=85.83 E-value=0.39 Score=37.31 Aligned_cols=19 Identities=32% Similarity=0.207 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
++..+++.|++|||||..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4567899999999999643
No 298
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.76 E-value=0.28 Score=36.91 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCCchhHH
Q 019041 62 LKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (347)
.+|.-+.+.||.|+|||..
T Consensus 7 ~~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp ESSEEEEEECCTTSCHHHH
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 3566788999999999963
No 299
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.75 E-value=0.75 Score=36.75 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=17.8
Q ss_pred hhcCCcEEEEcCCCCchhHHhH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
+..|.-+.+.||+|+|||..+-
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 4567889999999999996443
No 300
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.69 E-value=0.44 Score=39.94 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
.+++.||||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997544
No 301
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=85.67 E-value=0.48 Score=40.36 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=18.8
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHh
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (347)
+++.+++|.| ++.-|.||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455667876 456779999999875
No 302
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.65 E-value=0.82 Score=36.34 Aligned_cols=23 Identities=22% Similarity=-0.016 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCchhHHhHHH
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLP 84 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~ 84 (347)
..|.-+.+.+|+|+|||..+...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHH
Confidence 34677899999999999754433
No 303
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=85.62 E-value=0.57 Score=39.76 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=18.6
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHh
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (347)
+++.+++|.| ++.-|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4455667876 566789999999875
No 304
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.60 E-value=0.55 Score=40.78 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=19.8
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
++..+++|.| ++.-|.||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5566678877 4567799999999753
No 305
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=85.53 E-value=0.5 Score=40.29 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=18.3
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHh
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (347)
+++.+++|.| ++.-|.||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4455567876 456679999999874
No 306
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=85.49 E-value=0.45 Score=40.59 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=19.5
Q ss_pred hhHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 56 QGWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 56 ~~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
.+++.+++|.| ++.-|.||||||.+..
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 34555667876 5567799999998754
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=85.47 E-value=0.45 Score=35.79 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
++..+++.|++|+|||..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999643
No 308
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.41 E-value=0.59 Score=36.77 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=15.5
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+..|+-+.+.||+|+|||.
T Consensus 20 i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp --CCCCEEEECSTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4567889999999999996
No 309
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.39 E-value=0.78 Score=38.52 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 019041 65 RDLIGIAETGSGKTLSYLLP 84 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~ 84 (347)
+-+.+.++.|+|||.+....
T Consensus 106 ~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45778999999999765443
No 310
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.29 E-value=0.97 Score=33.89 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=17.1
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
-+.+.++.|+|||. .+..++..+..
T Consensus 6 ~i~i~G~sGsGKTT-l~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTT-LMEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHH-HHHHHHHHHHH
T ss_pred EEEEECCCCCCHHH-HHHHHHHhhHh
Confidence 46789999999996 34444444443
No 311
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=85.28 E-value=0.5 Score=40.56 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=19.2
Q ss_pred hhHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 56 QGWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 56 ~~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
.+++.+++|.| ++.-|.||||||.+..
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 34445667776 5667799999998743
No 312
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.26 E-value=0.52 Score=35.16 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
+++++.+++|||||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999997544
No 313
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.21 E-value=0.53 Score=40.56 Aligned_cols=19 Identities=42% Similarity=0.501 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
..++++.||+|+|||.++-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4689999999999997543
No 314
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.18 E-value=0.4 Score=36.66 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
+..+++.|++|+|||..+
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999743
No 315
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.06 E-value=0.66 Score=37.40 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 019041 63 KGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (347)
.++.+++.|++|+|||.++-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 38899999999999997433
No 316
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=85.02 E-value=0.48 Score=36.22 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCchhHH
Q 019041 65 RDLIGIAETGSGKTLS 80 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (347)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999963
No 317
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=84.98 E-value=0.58 Score=36.15 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.+..+++.||+|+|||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467789999999999964
No 318
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.88 E-value=1.5 Score=39.41 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCCchhHHh
Q 019041 62 LKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~ 81 (347)
.++.++++.|+||||||.+.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHH
T ss_pred ccCceEEEECCCCCCHHHHH
Confidence 34578999999999999643
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.87 E-value=0.46 Score=36.29 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
+..+++.|++|||||..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 446889999999999744
No 320
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=84.85 E-value=1.2 Score=31.52 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=34.5
Q ss_pred HHHHHhhcCC-CeEEEEe-cCcccHHHHHHHHhhCCCCceeecCCCC
Q 019041 268 IKLLKEVMDG-SRILIFT-ETKKGCDQVTRQLRMDGWPALSIHGDKN 312 (347)
Q Consensus 268 ~~~~~~~~~~-~~~lvf~-~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 312 (347)
...+.....+ ++++||| .+-..+...+..|+..|+++..+.|++.
T Consensus 79 ~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 79 YLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3333334455 7999999 5777788999999999999999988754
No 321
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=84.80 E-value=0.6 Score=41.07 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=18.2
Q ss_pred HhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 58 WPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 58 i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
++.+++|.| ++.-|.||||||.+..
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 344567776 5667799999998753
No 322
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=84.78 E-value=0.59 Score=40.20 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=19.0
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
+++.+++|.+ ++.-|.||||||.+..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 3445667776 5667799999998754
No 323
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=84.73 E-value=0.52 Score=39.80 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
-+++.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999997543
No 324
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.69 E-value=1.9 Score=39.53 Aligned_cols=40 Identities=30% Similarity=0.442 Sum_probs=26.5
Q ss_pred CCcccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEE
Q 019041 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYW 211 (347)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 211 (347)
+.+.+++++||.=..++......+...+..+..+.-++..
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 535 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3467899999998777766666677766666443333333
No 325
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.34 E-value=2.6 Score=32.36 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=41.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC-----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.+++++-+.++++.+++. +..+..++|+.+..+... .+ .+..+|+|+|.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~ 130 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATP 130 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCH
Confidence 4568999999999999998887653 567788888877554322 22 35678999995
No 326
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=84.31 E-value=0.49 Score=40.49 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=19.2
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHh
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (347)
++..+++|.| ++.-|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5666778876 456779999999875
No 327
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=84.19 E-value=1 Score=31.73 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCCeEEEEecCccc--HHHHHHHHhhCCCCceeecCCC
Q 019041 267 LIKLLKEVMDGSRILIFTETKKG--CDQVTRQLRMDGWPALSIHGDK 311 (347)
Q Consensus 267 l~~~~~~~~~~~~~lvf~~~~~~--~~~~~~~L~~~~~~~~~~~~~~ 311 (347)
+...+.....+++++|||.+-.. +...+..|++.|+++..+.|++
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 33444455567799999998877 8899999999999988888864
No 328
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.15 E-value=0.92 Score=38.52 Aligned_cols=58 Identities=12% Similarity=0.023 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL-AVQIQEEALKF 123 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l-~~q~~~~~~~~ 123 (347)
|.-+++.||+|+|||..+...+...... ....+.+..++++.....+ ..++.+.+..+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~--~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLP--GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSC--BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcc--cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 3467899999999997544433332221 0001124577887654431 23334444443
No 329
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.10 E-value=0.71 Score=35.17 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCchhHH
Q 019041 65 RDLIGIAETGSGKTLS 80 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (347)
+-+.+.||.|+|||.+
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999963
No 330
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=84.09 E-value=0.68 Score=34.78 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
+.+++.+++|||||..+-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368999999999997443
No 331
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=84.08 E-value=1.7 Score=34.43 Aligned_cols=55 Identities=25% Similarity=0.252 Sum_probs=40.0
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.+++++-+.++++.+++. +..+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 4568999999999999999888764 46778888876654433322 4679999994
No 332
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=84.08 E-value=0.66 Score=39.81 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=18.9
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhHHhH
Q 019041 57 GWPMALKGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~~ 82 (347)
++..+++|.| ++.-|.||||||.+..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 4455667876 5567799999998753
No 333
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=83.93 E-value=0.68 Score=40.27 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=19.8
Q ss_pred hhHhhhhcCCc--EEEEcCCCCchhHHh
Q 019041 56 QGWPMALKGRD--LIGIAETGSGKTLSY 81 (347)
Q Consensus 56 ~~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (347)
.++..+++|.+ ++.-|.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35666778876 466779999999875
No 334
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=83.89 E-value=1.8 Score=46.95 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHH----hhHhhhhcCCcEEEEcCCCCchhHHhH
Q 019041 34 FPDYCLEVIAKLGFVEPTPIQA----QGWPMALKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 34 l~~~~~~~l~~~~~~~~~~~Q~----~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (347)
+.+.+.+.+...|+ .+.+.+. ++.+.+..++.+++.||||+|||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34455666677777 4555552 233444557889999999999997544
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=83.71 E-value=1.1 Score=33.98 Aligned_cols=19 Identities=37% Similarity=0.232 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
.+..+++.|++|+|||..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999643
No 336
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.49 E-value=1.3 Score=37.26 Aligned_cols=58 Identities=16% Similarity=-0.021 Sum_probs=31.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL-AVQIQEEALKF 123 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l-~~q~~~~~~~~ 123 (347)
|.-+++.||+|+|||..++..+....... ...+.+.+++++.-...+ ..++...+..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhccc--ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999975444333322110 001114467887654332 34444444443
No 337
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.37 E-value=0.69 Score=37.06 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 019041 63 KGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (347)
....+++.||+|||||..+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34579999999999997433
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.36 E-value=0.49 Score=39.09 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCchhHH
Q 019041 65 RDLIGIAETGSGKTLS 80 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (347)
.-+++.||+|+|||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999964
No 339
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.35 E-value=0.36 Score=37.51 Aligned_cols=22 Identities=32% Similarity=0.063 Sum_probs=17.0
Q ss_pred hhhhcCCcEEEEcCCCCchhHH
Q 019041 59 PMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 59 ~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
+.+..+.-+.+.|++|+|||..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHH
Confidence 3445566788999999999964
No 340
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=83.33 E-value=12 Score=33.92 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=55.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH---hh-cCCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DL-RRGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||+|+++.-++.+.+.+.+... .++.+..++++........ .+ ....+|+|+|. .....+++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------hhhcCCCcccC
Confidence 66899999999999999998886532 2677888888876544322 22 23578999994 44556778888
Q ss_pred cEEEEecc
Q 019041 176 TYLVLDEA 183 (347)
Q Consensus 176 ~~iIvDE~ 183 (347)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 88886543
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=83.32 E-value=0.62 Score=35.98 Aligned_cols=20 Identities=30% Similarity=0.234 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhHHh
Q 019041 62 LKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~ 81 (347)
..+..+.+.||+|+|||..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34677889999999999643
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.31 E-value=0.74 Score=35.31 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCCchhHHh
Q 019041 62 LKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~ 81 (347)
..+..+++.|++|||||..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999743
No 343
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.28 E-value=0.74 Score=36.12 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
+..+++.|++|||||..+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578999999999997433
No 344
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.28 E-value=0.59 Score=38.87 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
..+++.||+|+|||.++
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999744
No 345
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=83.24 E-value=0.64 Score=36.12 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCCchhHHh
Q 019041 62 LKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~ 81 (347)
..+..+++.|++|||||..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHH
Confidence 35677999999999999743
No 346
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.23 E-value=0.76 Score=36.18 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=15.8
Q ss_pred hhcCCcEEEEcCCCCchhHH
Q 019041 61 ALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (347)
+..|+-+.+.||.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45677889999999999963
No 347
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=83.20 E-value=0.44 Score=37.80 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=12.6
Q ss_pred hhcCCcEEEEcCCCCchhHH
Q 019041 61 ALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (347)
+..|+-+.+.||+|+|||.+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 44577789999999999974
No 348
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=83.15 E-value=0.7 Score=35.69 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
..+++.|++|+|||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999743
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.14 E-value=0.84 Score=34.56 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
..+++.|++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999997543
No 350
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.12 E-value=1.2 Score=37.30 Aligned_cols=23 Identities=22% Similarity=-0.036 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCchhHHhHHHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAF 86 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~ 86 (347)
|.-+++.+++|+|||..++..+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999975544443
No 351
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.08 E-value=1.9 Score=34.18 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=35.2
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 334 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 334 (347)
.+.++||.+++++-+.++++.+++. +..+..++|+.+... ..+.+..+..+|+|+|
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~T 156 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGT 156 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEEC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEEC
Confidence 4569999999999999999888754 456666676654332 2345556778999999
No 352
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=82.96 E-value=2 Score=33.75 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=38.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh---CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.+++++-+.++++.+++ .+..+..++|+.+...+.. .+. ...+|+|+|.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS-KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH-SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc-CCCCEEEECH
Confidence 456899999999999999998876 3677788888766544332 233 3579999994
No 353
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=82.86 E-value=0.9 Score=39.93 Aligned_cols=35 Identities=23% Similarity=0.127 Sum_probs=22.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 107 (347)
..+++.+++|+|||.++...+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~--------G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR--------GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH--------HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEe
Confidence 368899999999997655444333222 44566665
No 354
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.85 E-value=0.69 Score=36.14 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
.+++.||+|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997443
No 355
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=82.84 E-value=4 Score=35.92 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=46.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEE
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (347)
+.+++|+||++.-++.+.+.+.+. ++++..++|.... .....+. ...+|+|+|. .....+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REYPTIKQKKPDFILATD------IAEMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS------STTCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHHhhhcCCCceEEEECC------hhheeeccC-ceEE
Confidence 567999999999999999988875 6778888884322 2233333 3478999994 334455677 7887
Q ss_pred E
Q 019041 179 V 179 (347)
Q Consensus 179 I 179 (347)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 356
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.82 E-value=0.62 Score=40.33 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
-++|.||||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 46889999999996544
No 357
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=82.82 E-value=0.68 Score=36.11 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=19.5
Q ss_pred HHHHhhHhhhhcCCcEEEEcCCCCchhHH
Q 019041 52 PIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 52 ~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (347)
+.++... .+..+..+++.|++|+|||..
T Consensus 14 ~~~r~~~-~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 14 RSERTEL-RNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp HHHHHHH-HTSSCEEEEEECSTTSSHHHH
T ss_pred HHHhhcc-cCCCCCEEEEECCCCCCHHHH
Confidence 3444442 245567889999999999964
No 358
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=82.75 E-value=0.71 Score=36.48 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
....+++.|++|||||..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3467899999999999743
No 359
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=82.69 E-value=0.74 Score=35.83 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
++..+++.|++|||||..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999643
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.66 E-value=0.85 Score=34.05 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
+.+++.|++|||||..+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997443
No 361
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.61 E-value=0.71 Score=36.07 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
.+++.||+|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997433
No 362
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.60 E-value=0.77 Score=38.80 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhHH
Q 019041 65 RDLIGIAETGSGKTLS 80 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (347)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999964
No 363
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=82.45 E-value=10 Score=33.52 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=18.5
Q ss_pred hhcCCcEEEEcCCCCchhHHhHH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLL 83 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~ 83 (347)
+.+|+..++.+|.|+|||..+..
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHH
Confidence 45688999999999999975443
No 364
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=82.36 E-value=1.9 Score=39.11 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
+..+++|.|.||||||.+.-..++..+
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999975444444443
No 365
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=82.32 E-value=0.87 Score=35.36 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=16.1
Q ss_pred hhhcCCcEEEEcCCCCchhHH
Q 019041 60 MALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~ 80 (347)
.+.+|+-+.+.||.|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 466788899999999999963
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=82.25 E-value=1.5 Score=36.49 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
+..+.+.+|+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456789999999999743
No 367
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=82.23 E-value=0.8 Score=33.92 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=18.1
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHH
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFV 87 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~ 87 (347)
..|.-+.+.+|.|+|||. ++-.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTT-Llr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT-LTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHH-HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHH-HHHHHHH
Confidence 456778899999999995 3433333
No 368
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=82.01 E-value=0.88 Score=35.75 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
...+++.|++|+|||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578999999999997433
No 369
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=81.90 E-value=5.3 Score=33.05 Aligned_cols=74 Identities=19% Similarity=0.307 Sum_probs=53.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH---hh-cCCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DL-RRGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||.|+++.-++.+.+.+.. .++.+..++|+.+...... .+ ....+|+|+|. .....+++.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccccce
Confidence 45799999999999888888765 3778899999877654432 22 23578999993 33446677888
Q ss_pred cEEEEecc
Q 019041 176 TYLVLDEA 183 (347)
Q Consensus 176 ~~iIvDE~ 183 (347)
+++|.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 88885443
No 370
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=81.80 E-value=0.77 Score=34.95 Aligned_cols=15 Identities=27% Similarity=0.100 Sum_probs=13.0
Q ss_pred cEEEEcCCCCchhHH
Q 019041 66 DLIGIAETGSGKTLS 80 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (347)
.+++.|++|+|||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999964
No 371
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=81.73 E-value=0.94 Score=34.90 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
+..+++.|++|+|||..+
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999743
No 372
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.72 E-value=0.72 Score=34.83 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=11.4
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 019041 63 KGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (347)
++..+++.|++|||||..+-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578999999999997433
No 373
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=81.62 E-value=3.7 Score=36.06 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999743
No 374
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=81.60 E-value=1.9 Score=34.84 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 125 (347)
|..+++.+++|+|||..++..+.+.+.+ +.++++++-. +-..++.+.++.++-
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~--------Ge~~~~~~~~-e~~~~l~~~~~~~G~ 73 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKS--------DNLVGMFSIS-YPLQLIIRILSRFGV 73 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHT--------TCEEEEEECS-SCHHHHHHHHHHTTC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHC--------CCcEEEEEEe-CCHHHHHHHHHHcCC
Confidence 4567888788888884333333334443 5678887653 334556666666533
No 375
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=81.56 E-value=0.91 Score=38.72 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=15.8
Q ss_pred cCCc--EEEEcCCCCchhHHhH
Q 019041 63 KGRD--LIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~--~lv~~~tGsGKT~~~~ 82 (347)
.|.+ ++.-|.||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 3666 5788999999998754
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.48 E-value=2.5 Score=35.39 Aligned_cols=15 Identities=13% Similarity=0.023 Sum_probs=12.7
Q ss_pred cEEEEcCCCCchhHH
Q 019041 66 DLIGIAETGSGKTLS 80 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (347)
-+.+.||+|+|||..
T Consensus 94 iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999964
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=81.47 E-value=1.4 Score=36.60 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
+.-+.+.||+|+|||.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997443
No 378
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=81.45 E-value=0.89 Score=34.60 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCchhHH
Q 019041 65 RDLIGIAETGSGKTLS 80 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (347)
.-+++.||+|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3468999999999974
No 379
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=81.29 E-value=0.74 Score=36.17 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCCchhHHhH
Q 019041 62 LKGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~ 82 (347)
.+.+-+++.||+||||+..+-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 344567889999999996443
No 380
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=81.24 E-value=1 Score=40.59 Aligned_cols=52 Identities=17% Similarity=0.047 Sum_probs=30.2
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 120 (347)
+..|.-+++.|++|+|||..++-.+....... +.++++++-- .-..|+...+
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-------g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-------GKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-------CCCEEEEESS-SCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc-------CCcEEEEecc-CCHHHHHHHH
Confidence 33456789999999999965444444333221 4457777642 2234444443
No 381
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=81.19 E-value=0.97 Score=35.87 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 019041 63 KGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (347)
.+..+++.|++|+|||..+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34679999999999997443
No 382
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=81.11 E-value=0.8 Score=37.11 Aligned_cols=18 Identities=22% Similarity=0.008 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
...++++|++|||||..+
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 346899999999999743
No 383
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.10 E-value=3.7 Score=45.33 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=42.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhh----HhhhhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcH
Q 019041 35 PDYCLEVIAKLGFVEPTPIQAQG----WPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (347)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~~Q~~~----i~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 110 (347)
.+.+.+.+.+.|+ .+.+.+..- .+.+.-++.+++.||||+|||.++- ++......-. +......++-|..
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al~~l~---~~~~~~~~iNPKa 947 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAIEQVD---NIKSEAHVMDPKA 947 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHHTTTT---TCEEEEEEECTTT
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHHHHhh---CCCceEEEECCCC
Confidence 3455556667777 555555433 3334456789999999999997543 2222222110 1123456777865
Q ss_pred HHHHH
Q 019041 111 ELAVQ 115 (347)
Q Consensus 111 ~l~~q 115 (347)
--..|
T Consensus 948 it~~e 952 (3245)
T 3vkg_A 948 ITKDQ 952 (3245)
T ss_dssp SCHHH
T ss_pred Cchhh
Confidence 44444
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=81.05 E-value=0.85 Score=34.38 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
+|..+.+.+++|+|||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999964
No 385
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=80.92 E-value=1 Score=30.17 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=32.1
Q ss_pred cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCC
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDK 311 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 311 (347)
..++++++||.+-..+...+..|++.|+++..+.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 3567999999998889999999999999888888863
No 386
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.92 E-value=3.6 Score=31.51 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=41.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC--CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.+++++-+.++++.+++. +..+..++|+.+.......+ . ...+|+|+|.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~i~v~T~ 128 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---L-RGADAVVATP 128 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---H-HCCSEEEECH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---h-CCCCEEEECH
Confidence 3568999999999999999998765 35677788877654443322 2 2578999994
No 387
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=80.85 E-value=0.99 Score=35.48 Aligned_cols=18 Identities=17% Similarity=0.040 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
..+.+.||+|||||..+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997433
No 388
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=80.83 E-value=18 Score=32.93 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=56.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH---hh-cCCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DL-RRGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||+|+++.-++.+.+.+.+... .++.+..++++........ .+ ....+|+|+|. .....+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~~~~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------hhhcCCCcccC
Confidence 66899999999999999998887533 2677888888876544322 22 23578999994 44456778888
Q ss_pred cEEEEecch
Q 019041 176 TYLVLDEAD 184 (347)
Q Consensus 176 ~~iIvDE~h 184 (347)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 888875543
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=80.80 E-value=0.88 Score=34.60 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHhH
Q 019041 65 RDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (347)
..+++.|++|||||..+-
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999997433
No 390
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.79 E-value=2.1 Score=33.50 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=36.0
Q ss_pred cCCCeEEEEecCcccHHHHHHHHhh----CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
..+.++||.+++++-+.++++.+++ .+..+..++|+.+..+.... +. +.+|+|+|.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp 139 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTP 139 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECH
Confidence 3456999999999999999888765 36677888887665443222 22 378999994
No 391
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=80.61 E-value=1.1 Score=30.16 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=32.0
Q ss_pred cCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCC
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDK 311 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 311 (347)
..++++++||.+-..+...+..|.+.|+++..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 3567899999998889999999999999888888763
No 392
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.58 E-value=0.66 Score=39.32 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999743
No 393
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=80.43 E-value=0.88 Score=35.37 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.+.-+.+.||+|+|||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355678999999999963
No 394
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=80.37 E-value=2.9 Score=28.38 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHhhcCCCeEEEEecCcccHHHHHHHHhhCCCC-ceeecCCCC
Q 019041 270 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKN 312 (347)
Q Consensus 270 ~~~~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~ 312 (347)
.+.+...+++++|||.+-..+...+..|.+.|+. +..+.|++.
T Consensus 51 ~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 51 FMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 3444456789999999988899999999999984 778888643
No 395
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=80.08 E-value=1 Score=37.41 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=16.4
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+..|+.+.+.||+|+|||.
T Consensus 123 i~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp CTTCSEEEEECSSSSSHHH
T ss_pred ecCCCEEEEECCCCCcHHH
Confidence 4467889999999999996
No 396
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=80.03 E-value=3.2 Score=42.17 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=24.0
Q ss_pred CCcccEEEEecchhhhccCChHHHHHHHhhcCC
Q 019041 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (347)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (347)
.++.+++|+||+=..++......+...+..+..
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~ 602 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAK 602 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhC
Confidence 456789999999888777666666666655533
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=80.01 E-value=1 Score=35.22 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
+..+++.|++|||||..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999743
No 398
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=79.98 E-value=0.75 Score=36.20 Aligned_cols=20 Identities=30% Similarity=0.047 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCCchhHHh
Q 019041 62 LKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~ 81 (347)
..|.-+.+.+|+|+|||..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 45677899999999999643
No 399
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=79.93 E-value=1.1 Score=34.55 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=13.0
Q ss_pred cEEEEcCCCCchhHH
Q 019041 66 DLIGIAETGSGKTLS 80 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (347)
.+++.|++|+|||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999964
No 400
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=79.88 E-value=1.3 Score=39.34 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 64 GRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
..++++.||+|+|||.++ -.+...+
T Consensus 201 ~~~~LL~G~pG~GKT~la-~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA-EGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 358999999999999743 3334443
No 401
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=79.82 E-value=1.3 Score=33.90 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCchhHH
Q 019041 64 GRDLIGIAETGSGKTLS 80 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (347)
|..+.+.+|.|+|||..
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 35678999999999964
No 402
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=79.79 E-value=1.1 Score=33.20 Aligned_cols=16 Identities=25% Similarity=0.056 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999743
No 403
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=79.75 E-value=2.1 Score=32.25 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 65 RDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
.-+.+.++.|+|||. ++..++..+
T Consensus 7 ~~i~i~G~sGsGKTT-l~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTT-LLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHH-HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHH-HHHHHHHhc
Confidence 357899999999995 444444444
No 404
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=79.53 E-value=1.6 Score=36.17 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHH
Q 019041 64 GRDLIGIAETGSGKTLSYLLPA 85 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~~~~ 85 (347)
++.+.+.+++|+|||.++...+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3457788999999997555433
No 405
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=79.52 E-value=0.9 Score=38.03 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCchhHHhHHH
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLP 84 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~ 84 (347)
..+..+++.+|+|+|||..+...
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHH
Confidence 34556799999999999754433
No 406
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.47 E-value=1.2 Score=33.77 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=12.8
Q ss_pred cEEEEcCCCCchhHH
Q 019041 66 DLIGIAETGSGKTLS 80 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (347)
.+.+.||.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999963
No 407
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=79.39 E-value=0.98 Score=35.24 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999743
No 408
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=79.32 E-value=1.1 Score=41.35 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhH
Q 019041 66 DLIGIAETGSGKTL 79 (347)
Q Consensus 66 ~~lv~~~tGsGKT~ 79 (347)
++++.||+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999996
No 409
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.31 E-value=8.1 Score=33.33 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=51.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhh-cCCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||+|+++.-++.+.+.+.+. ++.+..++++....... ..+ ....+|+|+|. .....+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA------VAARGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH------HHHTTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhcCCCcccC
Confidence 668999999999999988888774 67888899887654432 222 23578999994 23335667788
Q ss_pred cEEEE
Q 019041 176 TYLVL 180 (347)
Q Consensus 176 ~~iIv 180 (347)
+++|.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88775
No 410
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=79.28 E-value=1.1 Score=34.42 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
..+++.|++|||||..+
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999743
No 411
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=79.23 E-value=1.3 Score=29.92 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=31.8
Q ss_pred hcCCCeEEEEecCcccHHHHHHHHhhCCCCceeecCCC
Q 019041 274 VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDK 311 (347)
Q Consensus 274 ~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 311 (347)
...++++++||.+=..+...+..|.+.|+....+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 34567999999988889999999999999888777753
No 412
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=79.08 E-value=1.2 Score=34.48 Aligned_cols=16 Identities=31% Similarity=0.073 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+.+.||+|||||.++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4679999999999743
No 413
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=79.01 E-value=4.8 Score=39.88 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----CCC----CceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRM----DGW----PALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.+++++-+.++++.+++ .+. .+..++|+.+..++.+..+.+.. .+|+|+|+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcH
Confidence 567999999999999999888864 355 78889999998887777777776 89999995
No 414
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=78.99 E-value=1.8 Score=38.57 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=29.6
Q ss_pred CccccccCCCCHHHHHHHHHCC--CCCCcHHHHhhHhhh--hcCCcEEEEcCCCCchhHHh
Q 019041 25 PIRIFQEANFPDYCLEVIAKLG--FVEPTPIQAQGWPMA--LKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 25 ~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~i~~~--~~~~~~lv~~~tGsGKT~~~ 81 (347)
+...|+.+.=.+...+.+++.- +..+. .+..+ .-.+.+++.||+|+|||..+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 4456888765555555555421 11111 11111 12356999999999999743
No 415
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=78.85 E-value=1.2 Score=34.60 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
.+++.||+||||+..+-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999996443
No 416
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=78.82 E-value=1.2 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.121 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999643
No 417
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=78.54 E-value=0.96 Score=36.05 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=16.1
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|+-+.+.||.|+|||.
T Consensus 28 i~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3457788999999999996
No 418
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=78.52 E-value=1.9 Score=36.75 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 019041 64 GRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (347)
+.-+.+.+|+|+|||.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4467899999999997443
No 419
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=78.42 E-value=11 Score=25.44 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=44.3
Q ss_pred HHHHHhhcCCCeEEEEecC------cccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 268 IKLLKEVMDGSRILIFTET------KKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 268 ~~~~~~~~~~~~~lvf~~~------~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.+.+.-...+++||..+ =-.|..+.+.|.+.|++...+.-..+++.+..+.+.......+.++.-.
T Consensus 8 ~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g 81 (109)
T 3ipz_A 8 KDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGG 81 (109)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEETT
T ss_pred HHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEECC
Confidence 3444444456799999874 5678899999999998877765544555555555444444556555443
No 420
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=78.39 E-value=1.3 Score=33.86 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=12.8
Q ss_pred EEEEcCCCCchhHHh
Q 019041 67 LIGIAETGSGKTLSY 81 (347)
Q Consensus 67 ~lv~~~tGsGKT~~~ 81 (347)
+++.|+.|||||..+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999643
No 421
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=78.26 E-value=1.5 Score=34.30 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=39.0
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC--------CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMD--------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.+++++-+.++++.+++. +..+..++|+.+..+.. +.+ .+..+|+|+|.
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp 134 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTP 134 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCH
Confidence 4568999999999999998877643 56777778876533221 111 23578999994
No 422
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=78.16 E-value=6 Score=25.25 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=29.0
Q ss_pred cCCCeEEEEecCcccHHHHHHHHhhCCCC-ceeecCCC
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDK 311 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~~~~~~-~~~~~~~~ 311 (347)
..++++++||.+-..+...+..|.+.|+. +..+ |++
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 45678999999988899999999999985 5555 553
No 423
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=78.03 E-value=1.1 Score=34.80 Aligned_cols=18 Identities=33% Similarity=0.045 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.+.-+.+.||.|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 345678999999999964
No 424
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=77.98 E-value=8.3 Score=36.75 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=43.3
Q ss_pred cCCCeEEEEecCcccHHHHHHHHh----hCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLR----MDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
..+.+++|.+++.+-|.+.++.+. ..|..+..+.|+++...+.... ..+|+|+|+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 456789999999999988877664 3589999999999876554432 368999995
No 425
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=77.74 E-value=1.2 Score=34.24 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=13.1
Q ss_pred cEEEEcCCCCchhHH
Q 019041 66 DLIGIAETGSGKTLS 80 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (347)
.+.+.|++|+|||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 578999999999964
No 426
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.66 E-value=1.9 Score=39.86 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=17.9
Q ss_pred hhhcCCcEEEEcCCCCchhHH
Q 019041 60 MALKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~ 80 (347)
.+..+..+++.+|+|+|||..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 455678999999999999964
No 427
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=77.55 E-value=0.9 Score=43.55 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.++.+++.+|+|+|||..
T Consensus 510 ~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCCBCCTTSSHHHH
T ss_pred CCceeEEECCCCCCHHHH
Confidence 467899999999999974
No 428
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=77.43 E-value=1.4 Score=34.70 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999743
No 429
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=77.32 E-value=1.5 Score=35.31 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
.+..+.+.||+|||||.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999643
No 430
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=77.27 E-value=1.3 Score=34.70 Aligned_cols=17 Identities=24% Similarity=0.102 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
..+.+.|++|||||.++
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999743
No 431
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.25 E-value=9.9 Score=32.64 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=53.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||+|+++.-+..+.+.+.+. +..+..++++....+.. ..+. ...+|+|+|. .....+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCC
Confidence 468999999999999999888874 66788888887654432 2222 3478999994 34456678888
Q ss_pred cEEEEe
Q 019041 176 TYLVLD 181 (347)
Q Consensus 176 ~~iIvD 181 (347)
+++|.-
T Consensus 336 ~~Vi~~ 341 (412)
T 3fht_A 336 SVVINF 341 (412)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 888853
No 432
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.08 E-value=2 Score=45.22 Aligned_cols=40 Identities=20% Similarity=0.080 Sum_probs=29.4
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCc
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 109 (347)
-.+.++++.+|+|+|||..+...+.+.+.. +.++++++-.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE 1118 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEcc
Confidence 356899999999999998666555555444 5568888644
No 433
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=77.04 E-value=1.1 Score=35.69 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.2
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|+-+.+.||.|+|||.
T Consensus 28 i~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3467888999999999996
No 434
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=76.67 E-value=2.6 Score=32.87 Aligned_cols=28 Identities=14% Similarity=0.037 Sum_probs=19.3
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhh
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~ 90 (347)
+.|.-+++.|+.|+|||.. +-.+.+.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~-~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTN-RDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHH-HHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHH-HHHHHHHHH
Confidence 4567789999999999964 333444443
No 435
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.67 E-value=6.1 Score=34.71 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=43.7
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC-CC---CceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMD-GW---PALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.++++||.|+++.-+.++++.+.+. +. .+..++|+.+..++..... ..+|+|+|.
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~ 109 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATP 109 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecH
Confidence 5789999999999999999988765 55 7888999988776654432 468999993
No 436
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=76.62 E-value=0.92 Score=36.56 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
+..+++.|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999643
No 437
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=76.48 E-value=3.3 Score=35.67 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcCCCCchhHHh
Q 019041 61 ALKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~ 81 (347)
+-+|+.+.+.+|+|+|||...
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHH
Confidence 345899999999999999744
No 438
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=76.47 E-value=1.6 Score=33.49 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
.+.+.|++|||||.++-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47799999999997543
No 439
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=76.41 E-value=1.3 Score=34.72 Aligned_cols=19 Identities=32% Similarity=0.204 Sum_probs=16.3
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|+-+.+.+|.|+|||.
T Consensus 32 i~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp EETTCCEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3467888999999999996
No 440
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=76.40 E-value=7 Score=33.45 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=20.8
Q ss_pred cEEEE-cCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc
Q 019041 66 DLIGI-AETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (347)
Q Consensus 66 ~~lv~-~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 107 (347)
-+.+. +--|.|||.+++..+...... +.+++++=
T Consensus 145 vIav~s~KGGvGKTT~a~nLA~~La~~--------g~rVlliD 179 (373)
T 3fkq_A 145 VVIFTSPCGGVGTSTVAAACAIAHANM--------GKKVFYLN 179 (373)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHH--------TCCEEEEE
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhC--------CCCEEEEE
Confidence 34444 578999998766554444333 45677664
No 441
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=76.32 E-value=11 Score=31.94 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||+|+++.-++.+.+.+.+. +..+..++++.+..... ..+. ...+|+|+|. .....+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 568999999999999988888774 66788888887654332 2232 3478999994 44556778889
Q ss_pred cEEEEecch
Q 019041 176 TYLVLDEAD 184 (347)
Q Consensus 176 ~~iIvDE~h 184 (347)
+++|.-+.-
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 998875544
No 442
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=76.25 E-value=16 Score=34.09 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=56.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhH---hhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||+|+++.-++.+.+.+.+. ++.+..++++........ .+. ...+|+|+|. .....+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCC
Confidence 568999999999999988888875 667778887765433322 222 3578999984 33456677889
Q ss_pred cEEEEecchhh
Q 019041 176 TYLVLDEADRM 186 (347)
Q Consensus 176 ~~iIvDE~h~~ 186 (347)
+++|+-+++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999888653
No 443
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=76.13 E-value=1.7 Score=34.80 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCchhHH
Q 019041 64 GRDLIGIAETGSGKTLS 80 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (347)
+..+++.||.|+|||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46789999999999963
No 444
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=76.06 E-value=6.9 Score=33.40 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=42.1
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.++++.-+.++++.+.+ .+..+..++|+.+..+....+. ..+|+|+|.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~ 146 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTP 146 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECH
Confidence 456999999999999998887764 4678888899888665544332 468999993
No 445
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=76.05 E-value=1.4 Score=33.21 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchhHHhH
Q 019041 63 KGRDLIGIAETGSGKTLSYL 82 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (347)
.|+-+++.++.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 45679999999999997544
No 446
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=76.02 E-value=1.5 Score=33.69 Aligned_cols=17 Identities=24% Similarity=0.069 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchhHHh
Q 019041 65 RDLIGIAETGSGKTLSY 81 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (347)
..+.+.+++|||||.++
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999743
No 447
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=75.93 E-value=2.2 Score=35.75 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=22.8
Q ss_pred cccEEEEecchhhhccCChHHHHHHHhhcCCCccEEEEEee
Q 019041 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (347)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lsaT 214 (347)
..+++|++..+.+.. . ..+...++.+.+...++..|--
T Consensus 151 ~ad~ill~k~dl~de-~--~~l~~~l~~l~~~~~ii~~sh~ 188 (318)
T 1nij_A 151 YADRILLTKTDVAGE-A--EKLHERLARINARAPVYTVTHG 188 (318)
T ss_dssp TCSEEEEECTTTCSC-T--HHHHHHHHHHCSSSCEEECCSS
T ss_pred hCCEEEEECcccCCH-H--HHHHHHHHHhCCCCeEEEeccc
Confidence 457888888876522 2 5566666666555556665543
No 448
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.91 E-value=2.2 Score=44.07 Aligned_cols=42 Identities=19% Similarity=0.081 Sum_probs=29.5
Q ss_pred hcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHH
Q 019041 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~ 111 (347)
-.+..+++.+|+|+|||..++..+...+.. +.+++|++-...
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~--------G~~vlYI~te~~ 73 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAEHA 73 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEECTTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhC--------CCceEEEEecCc
Confidence 346789999999999998665555554443 456888875443
No 449
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=75.90 E-value=12 Score=35.65 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=43.7
Q ss_pred cCCCeEEEEecCcccHHHHHHHHh----hCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 275 MDGSRILIFTETKKGCDQVTRQLR----MDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 275 ~~~~~~lvf~~~~~~~~~~~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
..+..++|.+++.+-|.+.++.+. ..|..+.++.|+++...+.... ..+|+++|+
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 357789999999999998877764 3689999999999877665442 368999995
No 450
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.75 E-value=8.1 Score=31.06 Aligned_cols=56 Identities=25% Similarity=0.272 Sum_probs=41.5
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----CCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.+++++-+.++++.+++ .+..+..+.|+.+...... .+..+ .+|+|+|.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp 184 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATP 184 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcH
Confidence 356899999999999999888875 3566777888777554433 33334 79999993
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.51 E-value=1.9 Score=31.42 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=12.8
Q ss_pred cEEEEcCCCCchhHH
Q 019041 66 DLIGIAETGSGKTLS 80 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (347)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999964
No 452
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=75.16 E-value=2.1 Score=28.24 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=30.4
Q ss_pred CeEEEEecCcccHHHHHHHHhhCCCCceeecCCCC
Q 019041 278 SRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 312 (347)
Q Consensus 278 ~~~lvf~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 312 (347)
+++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999998777877654
No 453
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.12 E-value=7.2 Score=31.05 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=40.2
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 277 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 277 ~~~~lvf~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
+.++||.+++++-+.++++.+++. +..+..++|+.+....... . ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECH
Confidence 458999999999999998887653 5667778887765443322 2 24678999994
No 454
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=75.09 E-value=2.5 Score=37.67 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
|.-+.+.|+.|+|||.++
T Consensus 293 GeVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTI 310 (503)
T ss_dssp TEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCcccHHHHH
Confidence 345789999999999743
No 455
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=74.96 E-value=1.9 Score=34.15 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=16.5
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhh
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHV 89 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~ 89 (347)
+.+|.-+++.|+.|+|||.. +-.+.+.+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~-~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTH-LQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHH-HHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHH-HHHHHHHH
Confidence 45677899999999999964 33333443
No 456
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=74.89 E-value=1.3 Score=35.02 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=16.3
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|+-+.+.+|.|+|||.
T Consensus 31 i~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3467888999999999996
No 457
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=74.87 E-value=1.3 Score=35.49 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.2
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|+-+.+.||.|+|||.
T Consensus 32 i~~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKST 50 (247)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3467888999999999996
No 458
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=74.83 E-value=1.3 Score=36.24 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.1
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|.-+.+.||.|+|||.
T Consensus 31 i~~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKST 49 (275)
T ss_dssp EETTSEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3457788999999999996
No 459
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=74.75 E-value=1.4 Score=35.72 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.4
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+..|+-+.+.+|.|+|||.
T Consensus 43 i~~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKST 61 (260)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 4467889999999999996
No 460
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=74.64 E-value=2.3 Score=33.21 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCCchhHHhHHHHHHhhhc
Q 019041 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 91 (347)
+|.-+++.|+.|+|||.. +-.+.+.+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~-~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTA-RNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHH-HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 467789999999999964 3344444443
No 461
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=74.64 E-value=2.8 Score=28.34 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=32.1
Q ss_pred hhcCCCeEEEEecCcccHHHHHHHHhhCCCC-ceeecCCC
Q 019041 273 EVMDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDK 311 (347)
Q Consensus 273 ~~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~-~~~~~~~~ 311 (347)
....++++++||.+-..+...+..|...|+. +..+.|++
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 3445678999999888899999999999995 88888864
No 462
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=74.39 E-value=0.94 Score=35.21 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=12.2
Q ss_pred EEEEcCCCCchhHH
Q 019041 67 LIGIAETGSGKTLS 80 (347)
Q Consensus 67 ~lv~~~tGsGKT~~ 80 (347)
+++.|+.|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999963
No 463
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.34 E-value=2.9 Score=36.26 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=19.9
Q ss_pred CCCccccccCCCCHHHHHHHHHCCCC
Q 019041 23 PRPIRIFQEANFPDYCLEVIAKLGFV 48 (347)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~l~~~~~~ 48 (347)
+.++..++..|+.+..++.|++.|+.
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 45566677778889998888888874
No 464
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=74.33 E-value=9.5 Score=33.61 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=47.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEE
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (347)
+.++||+||++.-++++.+.+.+. ++.+..+++.... .....+. ...+|+|+|. +....+++.+ ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~------v~~~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD------ISEMGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG------GGGSSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEECC------HHHhCcCCCC-CEE
Confidence 457999999999999988888764 6777888876543 2233333 3579999994 3444556676 666
Q ss_pred E
Q 019041 179 V 179 (347)
Q Consensus 179 I 179 (347)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 465
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=74.15 E-value=2 Score=36.83 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
-.++.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5679999999999754
No 466
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.09 E-value=3.4 Score=36.30 Aligned_cols=22 Identities=23% Similarity=0.043 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCchhHHhHHHHH
Q 019041 65 RDLIGIAETGSGKTLSYLLPAF 86 (347)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~~~~~ 86 (347)
+.+++.++.|+|||.+....+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3577889999999976554443
No 467
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=74.05 E-value=21 Score=33.27 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=55.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||.|+++.-++.+.+.+.+. ++.+..++++....... ..+. ...+|+|+|. .....+++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~------~l~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC------hhhcCccCCCC
Confidence 568999999999999988888875 66777788766543332 2232 3478999983 23446677888
Q ss_pred cEEEEecchh
Q 019041 176 TYLVLDEADR 185 (347)
Q Consensus 176 ~~iIvDE~h~ 185 (347)
+++|+=+++.
T Consensus 509 ~lVI~~d~d~ 518 (664)
T 1c4o_A 509 SLVAILDADK 518 (664)
T ss_dssp EEEEETTTTS
T ss_pred CEEEEeCCcc
Confidence 9999887764
No 468
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=73.88 E-value=1.3 Score=34.86 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=15.9
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|+-+.+.||.|+|||.
T Consensus 27 i~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKST 45 (224)
T ss_dssp EETTCEEEEEECTTSCHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3457778899999999996
No 469
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=73.61 E-value=1.5 Score=35.69 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.0
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|+-+.+.||.|+|||.
T Consensus 34 i~~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKST 52 (266)
T ss_dssp EETTCEEEEECCTTSCHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3457788899999999996
No 470
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=73.57 E-value=4.6 Score=36.42 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=41.7
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 277 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 277 ~~~~lvf~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
++++||++++++-+.++++.+++. +..+..++|+.+...+...+ . +..+|+|+|.
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~i~v~T~ 110 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHI---I-EDNDIIILTP 110 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHH---H-HHCSEEEECH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHH---h-cCCCEEEECH
Confidence 678999999999999888887654 88999999988655442222 1 2468999984
No 471
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=73.55 E-value=13 Score=31.95 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhh-cCCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
..++||+|+++.-++.+.+.+.+. ++.+..++|+....+.. ..+ .....|+|+|. .....+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccC
Confidence 458999999999999988888774 67788888887654432 222 23578999994 34456677888
Q ss_pred cEEEEec
Q 019041 176 TYLVLDE 182 (347)
Q Consensus 176 ~~iIvDE 182 (347)
+++|.-+
T Consensus 346 ~~Vi~~~ 352 (410)
T 2j0s_A 346 SLIINYD 352 (410)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 8888633
No 472
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=73.24 E-value=3.1 Score=37.65 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=29.9
Q ss_pred hhcCCcEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEcCcHHHHHHHHHHHH
Q 019041 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 121 (347)
+..|.-+++.+|+|+|||..+. .++...... +.+++++++... ..|+...+.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~-~l~g~~~~~-------G~~vi~~~~ee~-~~~l~~~~~ 329 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVS-RFVENACAN-------KERAILFAYEES-RAQLLRNAY 329 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHH-HHHHHHHTT-------TCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH-HHHHHHHhC-------CCCEEEEEEeCC-HHHHHHHHH
Confidence 4456788999999999996433 333222221 345677765433 234444443
No 473
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=73.20 E-value=2.1 Score=36.79 Aligned_cols=19 Identities=32% Similarity=0.127 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCCchhHH
Q 019041 62 LKGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (347)
..++.+++.||+|+|||..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp TTCCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3467889999999999963
No 474
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=73.18 E-value=8.8 Score=33.02 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=42.7
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 276 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 276 ~~~~~lvf~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
.+.++||.+++++-+.++++.+++. +..+..+.|+.+.... .+....+..+|+|+|.
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~ 167 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTP 167 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECH
Confidence 5678999999999999998888653 5666677776654333 4556667889999994
No 475
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=73.17 E-value=9.6 Score=35.62 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=47.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEE
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (347)
+.++||+||++.-++.+.+.+.+. ++++..+++.. .......+. ...+|+|+|. +....+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTd------v~e~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTD------ISEMGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECG------GGGTTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEECc------hhhcceeeC-CcEE
Confidence 568999999999999888888764 77888888842 112223333 3578999994 334455666 7766
Q ss_pred E
Q 019041 179 V 179 (347)
Q Consensus 179 I 179 (347)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 476
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.15 E-value=1.6 Score=34.90 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.1
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|.-+.+.||.|+|||.
T Consensus 29 i~~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTT 47 (240)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3457788899999999996
No 477
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=73.11 E-value=1.6 Score=35.33 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=16.1
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|.-+.+.||.|+|||.
T Consensus 30 i~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred EeCCCEEEEECCCCCCHHH
Confidence 3467788899999999996
No 478
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.10 E-value=2.5 Score=40.25 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHh
Q 019041 64 GRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (347)
..++++.||+|+|||.++
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 358999999999999744
No 479
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=73.06 E-value=1.3 Score=35.42 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=16.1
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+..|+-+.+.+|.|+|||.
T Consensus 25 i~~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKST 43 (243)
T ss_dssp ECTTEEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3457788999999999996
No 480
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=73.01 E-value=1.8 Score=34.27 Aligned_cols=18 Identities=28% Similarity=0.130 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhHH
Q 019041 63 KGRDLIGIAETGSGKTLS 80 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (347)
.+.-+++.|+.|+|||..
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 566789999999999964
No 481
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=72.94 E-value=2 Score=46.58 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcCCCCchhHHh
Q 019041 61 ALKGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~ 81 (347)
+..+++++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 345789999999999999754
No 482
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=72.89 E-value=1.3 Score=36.81 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=16.3
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+..|+.+.+.+|+|+|||.
T Consensus 77 i~~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKST 95 (306)
T ss_dssp ECTTCEEEEESSSCHHHHH
T ss_pred EcCCCEEEEECCCCchHHH
Confidence 3457889999999999996
No 483
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=72.75 E-value=1.6 Score=35.33 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=16.0
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+..|+-+.+.||.|+|||.
T Consensus 29 i~~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKST 47 (262)
T ss_dssp ECTTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3457778899999999996
No 484
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=72.71 E-value=1.6 Score=36.06 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHh
Q 019041 66 DLIGIAETGSGKTLSY 81 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (347)
.+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999743
No 485
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=72.67 E-value=3 Score=39.68 Aligned_cols=17 Identities=35% Similarity=0.300 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
++++.||||+|||.++-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999997543
No 486
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=72.62 E-value=4.1 Score=29.10 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=33.1
Q ss_pred hcCCCeEEEEecCcccHHHHHHHHhhCCC-CceeecCCCC
Q 019041 274 VMDGSRILIFTETKKGCDQVTRQLRMDGW-PALSIHGDKN 312 (347)
Q Consensus 274 ~~~~~~~lvf~~~~~~~~~~~~~L~~~~~-~~~~~~~~~~ 312 (347)
...+++++|||.+-..+...+..|.+.|+ ++..+.|++.
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 34567999999998899999999999999 5888888743
No 487
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.57 E-value=5.9 Score=35.77 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=38.6
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC----CCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 019041 277 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 335 (347)
Q Consensus 277 ~~~~lvf~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 335 (347)
++++||.+++++-+.++++.+++. +..+..++|+.+...+...+ . ...+|+|+|.
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~i~v~T~ 113 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV---I-EDSDIIVVTP 113 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHH---H-HHCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHh---h-CCCCEEEECH
Confidence 678999999999999988888764 88999999988655433222 1 2468999994
No 488
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=72.57 E-value=2.2 Score=34.29 Aligned_cols=17 Identities=24% Similarity=0.014 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhHHhH
Q 019041 66 DLIGIAETGSGKTLSYL 82 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (347)
.+.+.|++|||||.++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997543
No 489
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=72.53 E-value=2.2 Score=32.10 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=12.9
Q ss_pred cEEEEcCCCCchhHH
Q 019041 66 DLIGIAETGSGKTLS 80 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (347)
-.++.+|+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 568999999999963
No 490
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=72.43 E-value=11 Score=33.27 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=45.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhhHhhc-CCCcEEEeChHHHHHHHhcCCCCCCcccEE
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (347)
+.++||+||++.-++.+.+.+.+. ++.+..+++.... .....+. ...+|+|+|. +....+++.+ ++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~-~~~~~f~~g~~~iLVaT~------v~~~GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYD-TEYPKCKNGDWDFVITTD------ISEMGANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCC-CCGGGSSSCCCSEEEESS------CC---CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHH-HHHhhccCCCceEEEECC------hHHhCeecCC-CEE
Confidence 457999999999999999888875 6778888875332 2233333 3478999994 2233455666 555
Q ss_pred E
Q 019041 179 V 179 (347)
Q Consensus 179 I 179 (347)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 491
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.28 E-value=1.7 Score=35.07 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.0
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+.+|+-+.+.||.|+|||.
T Consensus 38 i~~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp ECTTCEEEEECCTTSSHHH
T ss_pred EcCCcEEEEECCCCCCHHH
Confidence 3457788899999999996
No 492
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=72.24 E-value=1.7 Score=35.41 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.3
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+..|+-+.+.||.|+|||.
T Consensus 42 i~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKST 60 (271)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 4467888999999999996
No 493
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.17 E-value=14 Score=31.60 Aligned_cols=72 Identities=7% Similarity=0.110 Sum_probs=51.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEECCCCCchhh---Hhhc-CCCcEEEeChHHHHHHHhcCCCCCCcc
Q 019041 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (347)
Q Consensus 100 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (347)
+.++||+|+++.-++.+.+.+.+. ++.+..++++....... ..+. ...+|+|+|. .....+++.++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCC
Confidence 568999999999999988888875 66778888887654332 2232 3468999993 33445667788
Q ss_pred cEEEEe
Q 019041 176 TYLVLD 181 (347)
Q Consensus 176 ~~iIvD 181 (347)
+++|.-
T Consensus 328 ~~Vi~~ 333 (400)
T 1s2m_A 328 NVVINF 333 (400)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 887753
No 494
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=72.11 E-value=1.7 Score=34.93 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.1
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+..|.-+.+.||.|+|||.
T Consensus 23 i~~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKST 41 (249)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3457788999999999996
No 495
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=72.10 E-value=3.7 Score=34.44 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=23.1
Q ss_pred cEEEEcCCCCchhHHhHHHHHHhhhcCCCccCCCCCEEEEEc
Q 019041 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (347)
Q Consensus 66 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 107 (347)
-+++.+..|.|||.++...+...... +.+++++-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~--------G~rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARS--------GKKTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--------TCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHC--------CCcEEEEe
Confidence 35677799999998776655544433 55677765
No 496
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=72.04 E-value=18 Score=24.54 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=42.0
Q ss_pred HHHHhhcCCCeEEEEec------CcccHHHHHHHHhhCCCCceeecCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 019041 269 KLLKEVMDGSRILIFTE------TKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 334 (347)
Q Consensus 269 ~~~~~~~~~~~~lvf~~------~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 334 (347)
+.+...-...+++||.. .=-.|..+.+.|.+.|++...+.-..+++.+..+.+.-.....+.++.-
T Consensus 7 ~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~ 78 (111)
T 3zyw_A 7 LRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVS 78 (111)
T ss_dssp HHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEET
T ss_pred HHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEEC
Confidence 34444445679999985 3345788899999999887776554455555555444344455555543
No 497
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=71.99 E-value=2.8 Score=29.55 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=32.5
Q ss_pred hcCCCeEEEEecCcccHHHHHHHHhhCCCC-ceeecCCCC
Q 019041 274 VMDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKN 312 (347)
Q Consensus 274 ~~~~~~~lvf~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~ 312 (347)
...+++++|||.+-..+...+..|.+.|+. +..+.|++.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 345679999999988899999999999985 888888754
No 498
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=71.95 E-value=1.8 Score=35.22 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=16.1
Q ss_pred hhcCCcEEEEcCCCCchhH
Q 019041 61 ALKGRDLIGIAETGSGKTL 79 (347)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (347)
+..|.-+.+.||.|+|||.
T Consensus 30 i~~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKST 48 (266)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3457788899999999996
No 499
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=71.93 E-value=2 Score=34.30 Aligned_cols=19 Identities=21% Similarity=0.011 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCchhHHh
Q 019041 63 KGRDLIGIAETGSGKTLSY 81 (347)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (347)
++.-+.+.||.|||||..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556789999999999643
No 500
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=71.85 E-value=2.2 Score=32.89 Aligned_cols=17 Identities=29% Similarity=-0.107 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCchhHH
Q 019041 64 GRDLIGIAETGSGKTLS 80 (347)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (347)
+.-+.+.|+.|+|||..
T Consensus 22 ~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999964
Done!