BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019043
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ANI|A Chain A, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|B Chain B, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|E Chain E, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|F Chain F, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 213
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 94/149 (63%), Gaps = 5/149 (3%)
Query: 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
++ L +LS R LR+ ADF+NFR+RT +E + + LL VLDNFERA
Sbjct: 67 QIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA- 125
Query: 225 TQIKVQTEGEE--KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTE 282
+K++T+ E+ I + +Y+ LV+ L GV +E VG PFDP LH+A+M+ ++
Sbjct: 126 --LKIETDNEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEG 183
Query: 283 FDEGVIIEEFRKGFKLGDRLLRPSMVKVS 311
++ ++EE +KG+KL DR+LRP+MVKVS
Sbjct: 184 YEPNTVVEELQKGYKLKDRVLRPAMVKVS 212
>pdb|3A6M|A Chain A, Crystal Structure Of Grpe From Thermus Thermophilus Hb8
pdb|3A6M|B Chain B, Crystal Structure Of Grpe From Thermus Thermophilus Hb8
Length = 177
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207
+E L++ E LE ++ EEL + + LR+ ADFDN+RKR E+E +
Sbjct: 10 LEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVL 69
Query: 208 EVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPF 267
+ + LL VLD+ +RA ++ E I ++I IL LGV V G F
Sbjct: 70 KALRALLPVLDDLDRA---LEFAEASPESIRQGVRAIRDGFFRILAGLGVEEVPGEGEAF 126
Query: 268 DPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 311
DP HEA+ + G + + F++GF++G+ L+RP+ V V
Sbjct: 127 DPRYHEAV---GLLPGEPGKVAKVFQRGFRMGEALVRPARVAVG 167
>pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
pdb|1DKG|B Chain B, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 197
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 11/173 (6%)
Query: 147 EIEALLKSFEDEKID-LERKVVNLSEELSA----ERARILRISADFDNFRKRTEKERLSL 201
EIEA+ E++D + KV NL +L+ ER ILR+ A+ +N R+RTE +
Sbjct: 24 EIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKA 83
Query: 202 VTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSI---YKQLVEILGSLGVV 258
A + + LL V+D+ +RA ++V + ++ + I K +++++ GV
Sbjct: 84 HKFALEKFINELLPVIDSLDRA---LEVADKANPDMSAMVEDIELTLKSMLDVVRKFGVE 140
Query: 259 PVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 311
+ P DP +H+AI +S + G ++ +KG+ L R +R +MV V+
Sbjct: 141 VIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVA 193
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 244 IYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMRE 278
IYK +V+I GS+ +PV VGN D E RE
Sbjct: 101 IYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTRE 135
>pdb|1A5V|A Chain A, Asv Integrase Core Domain With Hiv-1 Integrase Inhibitor
Y3 And Mn Cation
pdb|1A5W|A Chain A, Asv Integrase Core Domain With Hiv-1 Integrase Inhibitor
Y3
pdb|1A5X|A Chain A, Asv Integrase Core Domain With Hiv-1 Integrase Inhibitor
Y3
Length = 158
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223
+R+ A+ D F KR + T+ QGE++ + + L++FER
Sbjct: 116 IRVLAEGDGFMKR-------IPTSKQGELLAKAMYALNHFERG 151
>pdb|1ASU|A Chain A, Avian Sarcoma Virus Integrase Catalytic Core Domain
Crystallized From 2% Peg 400, 2m Ammonium Sulfate, Hepes
Ph 7.5
Length = 162
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223
+R+ A+ D F KR + T+ QGE++ + + L++FER
Sbjct: 120 IRVLAEGDGFMKR-------IPTSKQGELLAKAMYALNHFERG 155
>pdb|1ASV|A Chain A, Avian Sarcoma Virus Integrase Catalytic Core Domain
Length = 162
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223
+R+ A+ D F KR + T+ QGE++ + + L++FER
Sbjct: 120 IRVLAEGDGFMKR-------IPTSKQGELLAKAMYALNHFERG 155
>pdb|1CZ9|A Chain A, Atomic Resolution Asv Integrase Core Domain (D64n) From
Citrate
Length = 162
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223
+R+ A+ D F KR + T+ QGE++ + + L++FER
Sbjct: 120 IRVLAEGDGFMKR-------IPTSKQGELLAKAMYALNHFERG 155
>pdb|1CXQ|A Chain A, Atomic Resolution Asv Integrase Core Domain From Ammonium
Sulfate
pdb|1CXU|A Chain A, 1.42a Resolution Asv Integrase Core Domain From Citrate
pdb|1CZB|A Chain A, Atomic Resolution Asv Integrase Core Domain From Hepes
Length = 162
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 181 LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223
+R+ A+ D F KR + T+ QGE++ + + L++FER
Sbjct: 120 IRVLAEGDGFMKR-------IPTSKQGELLAKAMYALNHFERG 155
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 4 VIKTPPFHASSLPA-TRAAPISLKSPKPICLSFRQRLISTSRLY 46
V+ TPPF +S+LP TR A I L K + + R++++S LY
Sbjct: 206 VLFTPPFTSSALPGITRDAIIKLA--KELGIEVREQVLSRESLY 247
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 4 VIKTPPFHASSLPA-TRAAPISLKSPKPICLSFRQRLISTSRLY 46
V+ TPPF +S+LP TR A I L K + + R++++S LY
Sbjct: 207 VLFTPPFTSSALPGITRDAIIKLA--KELGIEVREQVLSRESLY 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,991,849
Number of Sequences: 62578
Number of extensions: 289501
Number of successful extensions: 693
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 33
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)