Query 019043
Match_columns 347
No_of_seqs 210 out of 1243
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14143 heat shock protein Gr 100.0 1E-47 2.3E-52 360.5 20.8 166 160-325 70-235 (238)
2 PRK14155 heat shock protein Gr 100.0 1.8E-46 3.8E-51 346.1 19.5 156 159-314 15-173 (208)
3 PRK14161 heat shock protein Gr 100.0 6.5E-46 1.4E-50 335.3 19.5 158 157-314 19-178 (178)
4 PRK14151 heat shock protein Gr 100.0 4.4E-46 9.5E-51 335.9 18.2 154 159-312 22-175 (176)
5 PRK14148 heat shock protein Gr 100.0 7.5E-46 1.6E-50 338.9 19.7 157 156-313 39-195 (195)
6 PRK14141 heat shock protein Gr 100.0 1.1E-45 2.3E-50 340.9 19.7 154 161-314 35-193 (209)
7 PRK14153 heat shock protein Gr 100.0 1.1E-45 2.4E-50 337.5 19.5 157 158-315 34-190 (194)
8 PRK14163 heat shock protein Gr 100.0 1.8E-45 3.9E-50 340.1 21.0 145 161-313 44-188 (214)
9 PRK14147 heat shock protein Gr 100.0 1.3E-45 2.9E-50 331.7 18.3 151 160-313 21-171 (172)
10 COG0576 GrpE Molecular chapero 100.0 1.6E-45 3.5E-50 336.3 18.9 153 162-314 41-193 (193)
11 PRK14139 heat shock protein Gr 100.0 2.3E-45 5E-50 333.4 18.8 151 159-313 34-184 (185)
12 PRK14145 heat shock protein Gr 100.0 4.8E-45 1E-49 333.7 20.1 156 153-312 41-196 (196)
13 PRK14150 heat shock protein Gr 100.0 3.4E-45 7.3E-50 334.3 19.0 155 155-312 39-193 (193)
14 PRK14162 heat shock protein Gr 100.0 2.9E-45 6.3E-50 334.8 18.5 157 155-312 37-194 (194)
15 PRK14160 heat shock protein Gr 100.0 9.7E-45 2.1E-49 334.9 20.3 158 150-312 54-211 (211)
16 PRK14158 heat shock protein Gr 100.0 7.8E-45 1.7E-49 332.0 18.6 153 158-312 41-194 (194)
17 PRK14144 heat shock protein Gr 100.0 9.2E-45 2E-49 332.4 19.1 153 159-313 47-199 (199)
18 PRK10325 heat shock protein Gr 100.0 8.1E-45 1.7E-49 332.8 18.4 139 176-314 58-196 (197)
19 PRK14140 heat shock protein Gr 100.0 1.1E-44 2.5E-49 330.2 19.1 154 158-312 38-191 (191)
20 PRK14146 heat shock protein Gr 100.0 1.8E-44 4E-49 334.2 19.5 155 159-314 56-214 (215)
21 PRK14154 heat shock protein Gr 100.0 1.7E-44 3.6E-49 332.6 18.6 153 159-311 54-207 (208)
22 PRK14159 heat shock protein Gr 100.0 2.8E-44 6.2E-49 324.0 17.2 147 164-312 30-176 (176)
23 PRK14149 heat shock protein Gr 100.0 1.1E-43 2.4E-48 323.6 18.4 148 164-313 43-190 (191)
24 PRK14157 heat shock protein Gr 100.0 1.7E-43 3.7E-48 329.2 18.1 145 161-313 81-225 (227)
25 PRK14156 heat shock protein Gr 100.0 3.6E-42 7.8E-47 310.6 19.3 146 161-312 31-177 (177)
26 PRK14142 heat shock protein Gr 100.0 2.9E-42 6.2E-47 319.9 18.4 144 168-318 44-188 (223)
27 PRK14164 heat shock protein Gr 100.0 9.3E-41 2E-45 309.8 16.7 139 164-312 77-216 (218)
28 cd00446 GrpE GrpE is the adeni 100.0 6.5E-39 1.4E-43 277.0 15.8 136 174-310 2-137 (137)
29 PF01025 GrpE: GrpE; InterPro 100.0 2.4E-39 5.3E-44 284.9 11.4 156 156-312 10-165 (165)
30 KOG3003 Molecular chaperone of 100.0 8.2E-38 1.8E-42 290.3 18.8 156 160-316 74-235 (236)
31 KOG3003 Molecular chaperone of 94.7 0.6 1.3E-05 44.7 12.2 89 138-228 66-154 (236)
32 COG1579 Zn-ribbon protein, pos 92.1 4.1 9E-05 39.2 13.3 76 142-217 23-98 (239)
33 COG2433 Uncharacterized conser 90.3 6.4 0.00014 42.6 13.8 164 122-296 386-555 (652)
34 PTZ00464 SNF-7-like protein; P 89.9 7 0.00015 36.9 12.4 9 122-130 12-20 (211)
35 TIGR03185 DNA_S_dndD DNA sulfu 89.8 16 0.00034 39.4 16.7 8 247-254 514-521 (650)
36 KOG0250 DNA repair protein RAD 89.7 6 0.00013 45.2 13.6 44 235-278 471-517 (1074)
37 PRK11637 AmiB activator; Provi 89.6 5.4 0.00012 40.6 12.5 60 144-203 76-135 (428)
38 COG1579 Zn-ribbon protein, pos 89.3 12 0.00027 36.0 13.9 18 244-261 179-196 (239)
39 PF06156 DUF972: Protein of un 89.1 1.5 3.3E-05 37.2 6.7 49 151-199 9-57 (107)
40 COG3883 Uncharacterized protei 88.8 14 0.0003 36.3 13.8 54 144-197 46-99 (265)
41 PF03938 OmpH: Outer membrane 88.6 6 0.00013 34.3 10.4 38 176-213 81-118 (158)
42 PF03962 Mnd1: Mnd1 family; I 88.5 12 0.00026 34.5 12.7 57 171-228 110-166 (188)
43 PF04728 LPP: Lipoprotein leuc 87.9 4.4 9.5E-05 30.9 7.8 52 143-194 3-54 (56)
44 cd07627 BAR_Vps5p The Bin/Amph 87.3 10 0.00022 35.3 11.7 74 145-218 117-197 (216)
45 KOG1962 B-cell receptor-associ 87.3 2 4.4E-05 40.8 7.0 50 146-195 161-210 (216)
46 PF04012 PspA_IM30: PspA/IM30 86.5 8.3 0.00018 35.6 10.6 60 134-193 75-134 (221)
47 PF05377 FlaC_arch: Flagella a 86.2 3.7 8E-05 31.2 6.5 44 144-187 1-44 (55)
48 PF06005 DUF904: Protein of un 86.0 12 0.00027 29.6 9.8 44 152-195 20-63 (72)
49 PF13805 Pil1: Eisosome compon 85.9 36 0.00077 33.6 14.9 92 165-256 166-263 (271)
50 COG3883 Uncharacterized protei 85.3 6.7 0.00015 38.4 9.6 61 141-201 36-96 (265)
51 KOG0977 Nuclear envelope prote 85.2 13 0.00029 39.8 12.4 74 126-199 122-197 (546)
52 PRK14143 heat shock protein Gr 84.6 31 0.00067 33.3 13.6 53 143-198 67-119 (238)
53 PRK14163 heat shock protein Gr 84.0 27 0.00059 33.2 12.8 59 137-198 34-92 (214)
54 PF06120 Phage_HK97_TLTM: Tail 83.9 15 0.00032 36.7 11.4 39 155-193 72-110 (301)
55 PF10481 CENP-F_N: Cenp-F N-te 83.5 12 0.00027 36.9 10.5 81 132-228 7-87 (307)
56 PRK13169 DNA replication intia 82.4 8.1 0.00018 33.1 7.9 48 150-197 8-55 (110)
57 KOG0250 DNA repair protein RAD 82.1 34 0.00074 39.4 14.6 88 139-226 390-490 (1074)
58 TIGR02894 DNA_bind_RsfA transc 81.8 17 0.00037 33.2 10.1 69 121-194 80-148 (161)
59 PRK11637 AmiB activator; Provi 81.7 12 0.00027 38.1 10.3 44 144-187 83-126 (428)
60 COG4942 Membrane-bound metallo 81.3 19 0.00041 37.5 11.5 50 144-193 46-95 (420)
61 KOG4603 TBP-1 interacting prot 81.3 36 0.00077 31.8 12.0 50 147-196 90-141 (201)
62 cd07664 BAR_SNX2 The Bin/Amphi 81.2 25 0.00053 33.6 11.5 69 149-217 139-212 (234)
63 PRK13729 conjugal transfer pil 81.2 4.3 9.4E-05 42.7 6.9 53 142-194 68-120 (475)
64 PF12128 DUF3584: Protein of u 81.1 60 0.0013 37.8 16.6 80 125-205 604-683 (1201)
65 KOG2856 Adaptor protein PACSIN 81.0 21 0.00044 36.9 11.3 130 157-295 177-326 (472)
66 COG4467 Regulator of replicati 80.8 4.6 0.0001 34.7 5.7 73 150-224 8-83 (114)
67 COG4026 Uncharacterized protei 80.7 16 0.00035 35.3 10.0 37 159-195 137-173 (290)
68 cd07623 BAR_SNX1_2 The Bin/Amp 79.9 53 0.0012 30.7 13.5 53 165-217 150-202 (224)
69 TIGR01069 mutS2 MutS2 family p 79.4 21 0.00045 39.8 11.8 8 285-292 639-646 (771)
70 PRK00409 recombination and DNA 78.7 28 0.0006 38.8 12.5 11 284-294 650-660 (782)
71 PF11932 DUF3450: Protein of u 78.6 61 0.0013 30.7 13.5 44 149-192 41-84 (251)
72 PRK09039 hypothetical protein; 78.5 35 0.00075 34.3 12.1 42 154-195 141-182 (343)
73 PF11559 ADIP: Afadin- and alp 78.4 25 0.00055 30.6 10.0 80 123-202 37-118 (151)
74 KOG0995 Centromere-associated 78.3 47 0.001 35.9 13.4 104 165-271 295-407 (581)
75 COG1196 Smc Chromosome segrega 77.9 72 0.0016 37.0 15.9 32 259-291 517-550 (1163)
76 PF11855 DUF3375: Protein of u 77.8 18 0.0004 37.8 10.3 105 115-219 116-232 (478)
77 PRK10884 SH3 domain-containing 77.4 20 0.00044 33.7 9.5 7 94-100 66-72 (206)
78 PF08317 Spc7: Spc7 kinetochor 77.2 20 0.00044 35.4 10.0 50 210-265 253-302 (325)
79 PF04111 APG6: Autophagy prote 76.9 60 0.0013 32.2 13.2 31 235-265 169-203 (314)
80 KOG0976 Rho/Rac1-interacting s 76.7 94 0.002 35.4 15.4 80 125-205 82-161 (1265)
81 PF14357 DUF4404: Domain of un 76.4 5.4 0.00012 32.4 4.7 36 215-257 50-85 (85)
82 KOG1853 LIS1-interacting prote 75.9 43 0.00094 33.1 11.4 84 143-226 45-130 (333)
83 PF09738 DUF2051: Double stran 75.1 50 0.0011 32.9 12.0 25 241-265 159-185 (302)
84 PF08614 ATG16: Autophagy prot 75.1 36 0.00079 31.1 10.4 53 142-194 115-167 (194)
85 cd07596 BAR_SNX The Bin/Amphip 74.9 60 0.0013 28.8 13.5 63 146-208 120-189 (218)
86 PF06810 Phage_GP20: Phage min 74.9 32 0.0007 30.8 9.8 53 144-196 21-76 (155)
87 PHA02562 46 endonuclease subun 74.7 1E+02 0.0022 32.1 14.8 26 142-167 298-323 (562)
88 PF04111 APG6: Autophagy prote 74.6 46 0.001 33.1 11.7 49 142-190 42-90 (314)
89 COG4026 Uncharacterized protei 74.5 20 0.00043 34.8 8.6 60 128-187 115-179 (290)
90 PF10146 zf-C4H2: Zinc finger- 74.4 62 0.0013 31.0 12.0 35 188-223 66-100 (230)
91 PF15290 Syntaphilin: Golgi-lo 74.4 68 0.0015 32.0 12.4 23 165-187 83-105 (305)
92 KOG0933 Structural maintenance 74.2 89 0.0019 36.2 14.7 27 145-171 679-705 (1174)
93 PF11559 ADIP: Afadin- and alp 74.1 36 0.00078 29.7 9.7 47 147-193 56-102 (151)
94 PF03194 LUC7: LUC7 N_terminus 74.0 25 0.00055 33.9 9.5 43 206-254 192-234 (254)
95 PF05529 Bap31: B-cell recepto 73.9 12 0.00026 34.0 6.9 33 164-196 154-186 (192)
96 TIGR03185 DNA_S_dndD DNA sulfu 73.8 75 0.0016 34.3 14.0 12 244-255 507-518 (650)
97 COG2433 Uncharacterized conser 73.7 54 0.0012 35.8 12.5 44 145-188 424-467 (652)
98 PF04012 PspA_IM30: PspA/IM30 72.7 79 0.0017 29.1 14.9 48 146-193 26-73 (221)
99 KOG2911 Uncharacterized conser 72.0 63 0.0014 33.9 12.1 36 146-181 229-264 (439)
100 PF11932 DUF3450: Protein of u 71.4 94 0.002 29.4 14.1 50 142-191 41-90 (251)
101 PF13851 GAS: Growth-arrest sp 71.0 90 0.002 29.0 16.0 19 241-259 159-177 (201)
102 PF05008 V-SNARE: Vesicle tran 70.8 14 0.0003 28.7 5.7 53 143-195 25-78 (79)
103 PF09325 Vps5: Vps5 C terminal 70.8 56 0.0012 29.8 10.7 55 164-218 163-217 (236)
104 PRK15396 murein lipoprotein; P 70.5 25 0.00054 28.4 7.2 54 141-194 23-76 (78)
105 PF06810 Phage_GP20: Phage min 70.0 65 0.0014 28.9 10.5 45 144-188 28-75 (155)
106 PF06005 DUF904: Protein of un 69.7 54 0.0012 26.0 10.3 46 145-190 6-51 (72)
107 PF06160 EzrA: Septation ring 69.6 1.4E+02 0.003 32.0 14.6 74 124-197 78-155 (560)
108 PF08317 Spc7: Spc7 kinetochor 69.6 22 0.00048 35.2 8.2 35 139-173 205-239 (325)
109 PRK09039 hypothetical protein; 69.5 71 0.0015 32.1 11.8 53 142-194 115-167 (343)
110 PF04156 IncA: IncA protein; 69.1 86 0.0019 28.1 13.5 41 144-184 82-122 (191)
111 smart00338 BRLZ basic region l 69.1 17 0.00038 27.3 5.8 35 144-178 27-61 (65)
112 PRK01156 chromosome segregatio 69.1 2E+02 0.0042 32.2 16.6 12 247-258 765-776 (895)
113 COG1842 PspA Phage shock prote 69.0 47 0.001 31.7 9.9 61 135-195 77-137 (225)
114 KOG0971 Microtubule-associated 68.9 1.3E+02 0.0027 34.8 14.2 52 172-224 266-317 (1243)
115 TIGR03752 conj_TIGR03752 integ 68.7 58 0.0012 34.5 11.2 55 147-204 70-124 (472)
116 PRK04863 mukB cell division pr 68.6 99 0.0021 37.2 14.3 63 133-195 973-1037(1486)
117 PRK04406 hypothetical protein; 67.9 45 0.00097 26.6 8.1 34 159-192 13-46 (75)
118 PF09403 FadA: Adhesion protei 67.5 86 0.0019 27.5 10.5 23 176-198 87-109 (126)
119 PRK10361 DNA recombination pro 67.2 1.8E+02 0.0039 31.0 15.1 52 176-227 104-156 (475)
120 KOG0796 Spliceosome subunit [R 67.1 94 0.002 31.4 11.9 48 204-257 186-233 (319)
121 PF13870 DUF4201: Domain of un 67.0 51 0.0011 29.5 9.3 53 148-200 82-134 (177)
122 cd07665 BAR_SNX1 The Bin/Amphi 66.5 1.2E+02 0.0026 29.1 12.2 67 149-215 139-210 (234)
123 PF04102 SlyX: SlyX; InterPro 66.2 28 0.0006 27.0 6.5 30 144-173 5-34 (69)
124 PRK00409 recombination and DNA 66.0 81 0.0018 35.2 12.4 20 283-304 637-656 (782)
125 PF10473 CENP-F_leu_zip: Leuci 65.5 1E+02 0.0022 27.5 14.7 27 165-191 53-79 (140)
126 COG3074 Uncharacterized protei 65.3 71 0.0015 25.7 10.2 29 146-174 7-35 (79)
127 PRK14160 heat shock protein Gr 65.3 89 0.0019 29.7 10.9 56 141-196 52-111 (211)
128 PF07926 TPR_MLP1_2: TPR/MLP1/ 65.2 90 0.002 26.9 11.1 54 151-204 60-113 (132)
129 TIGR01069 mutS2 MutS2 family p 65.0 85 0.0018 35.1 12.3 19 285-305 627-645 (771)
130 PRK10869 recombination and rep 64.9 70 0.0015 34.2 11.3 36 165-200 342-377 (553)
131 PF08172 CASP_C: CASP C termin 64.8 74 0.0016 30.8 10.5 60 121-184 75-134 (248)
132 PF05667 DUF812: Protein of un 64.7 1.6E+02 0.0034 32.1 13.9 51 144-194 322-372 (594)
133 PF14662 CCDC155: Coiled-coil 64.6 98 0.0021 29.2 10.8 54 144-197 68-128 (193)
134 KOG4196 bZIP transcription fac 64.5 25 0.00054 31.2 6.5 66 131-196 35-113 (135)
135 PRK14154 heat shock protein Gr 64.4 85 0.0018 29.8 10.5 48 145-195 54-101 (208)
136 PF12329 TMF_DNA_bd: TATA elem 64.1 50 0.0011 26.1 7.7 34 161-194 37-70 (74)
137 PRK10780 periplasmic chaperone 64.0 1.1E+02 0.0023 27.3 11.6 17 244-260 125-141 (165)
138 PF03357 Snf7: Snf7; InterPro 64.0 80 0.0017 27.2 9.8 29 147-175 5-33 (171)
139 COG5200 LUC7 U1 snRNP componen 63.8 1.4E+02 0.0031 28.8 12.1 47 208-260 189-235 (258)
140 PF10168 Nup88: Nuclear pore c 63.3 1.8E+02 0.004 32.3 14.3 47 150-196 572-618 (717)
141 PRK14158 heat shock protein Gr 62.3 1.1E+02 0.0025 28.6 10.9 50 144-196 41-90 (194)
142 PF12329 TMF_DNA_bd: TATA elem 62.3 76 0.0017 25.0 8.9 55 142-196 4-58 (74)
143 PF15450 DUF4631: Domain of un 61.9 2.3E+02 0.0051 30.5 15.1 81 121-201 308-388 (531)
144 PF10883 DUF2681: Protein of u 61.7 41 0.0009 27.7 7.0 37 161-197 27-63 (87)
145 KOG4010 Coiled-coil protein TP 61.7 43 0.00093 31.6 7.8 51 127-180 31-81 (208)
146 PF08826 DMPK_coil: DMPK coile 61.3 51 0.0011 25.4 7.0 42 155-196 16-57 (61)
147 PRK14161 heat shock protein Gr 61.3 1.2E+02 0.0025 28.0 10.6 24 175-198 48-71 (178)
148 cd07679 F-BAR_PACSIN2 The F-BA 61.2 1.7E+02 0.0037 28.7 14.1 50 156-205 167-216 (258)
149 KOG0243 Kinesin-like protein [ 61.1 2.2E+02 0.0048 33.2 14.6 38 144-181 435-472 (1041)
150 PF03938 OmpH: Outer membrane 60.9 1.1E+02 0.0024 26.4 12.5 25 237-261 111-135 (158)
151 PRK10361 DNA recombination pro 60.5 2.4E+02 0.0051 30.1 15.8 56 152-207 69-124 (475)
152 PRK10698 phage shock protein P 60.5 57 0.0012 30.8 8.7 35 157-191 99-133 (222)
153 PHA02562 46 endonuclease subun 60.2 2.1E+02 0.0047 29.6 13.7 15 261-276 288-302 (562)
154 PRK09973 putative outer membra 60.1 48 0.001 27.3 7.0 50 141-190 22-71 (85)
155 PRK00736 hypothetical protein; 60.1 54 0.0012 25.5 7.1 31 143-173 5-35 (68)
156 TIGR02894 DNA_bind_RsfA transc 59.9 55 0.0012 30.0 8.1 51 145-195 82-135 (161)
157 PF07106 TBPIP: Tat binding pr 59.9 78 0.0017 28.1 9.1 31 163-193 78-108 (169)
158 KOG0804 Cytoplasmic Zn-finger 59.6 2.4E+02 0.0053 30.0 14.8 107 143-253 339-449 (493)
159 PF01025 GrpE: GrpE; InterPro 59.2 50 0.0011 28.9 7.7 47 144-193 12-58 (165)
160 PF12777 MT: Microtubule-bindi 59.2 40 0.00087 33.6 7.8 37 152-188 223-259 (344)
161 TIGR02977 phageshock_pspA phag 59.1 1.5E+02 0.0034 27.5 13.8 58 136-193 78-135 (219)
162 PRK02119 hypothetical protein; 59.0 77 0.0017 25.0 7.9 35 158-192 10-44 (73)
163 PRK04863 mukB cell division pr 58.7 2.8E+02 0.0061 33.6 15.6 11 212-222 439-449 (1486)
164 smart00787 Spc7 Spc7 kinetocho 58.6 2E+02 0.0044 28.7 14.5 46 151-196 152-197 (312)
165 PRK00295 hypothetical protein; 58.6 66 0.0014 25.0 7.4 32 143-174 5-36 (68)
166 PRK14151 heat shock protein Gr 58.5 1.3E+02 0.0028 27.7 10.4 48 147-197 24-71 (176)
167 PF04102 SlyX: SlyX; InterPro 58.5 58 0.0012 25.2 7.0 39 157-195 4-42 (69)
168 PRK14162 heat shock protein Gr 58.4 1.3E+02 0.0029 28.1 10.6 49 145-196 41-89 (194)
169 PRK04406 hypothetical protein; 58.2 94 0.002 24.7 8.3 45 143-194 11-55 (75)
170 PRK15422 septal ring assembly 58.0 91 0.002 25.4 8.2 13 206-218 65-77 (79)
171 TIGR00634 recN DNA repair prot 57.9 1.1E+02 0.0023 32.6 11.2 21 256-276 464-484 (563)
172 PLN02939 transferase, transfer 57.8 3.6E+02 0.0078 31.4 17.7 24 26-49 18-41 (977)
173 PRK02119 hypothetical protein; 57.6 79 0.0017 25.0 7.7 46 142-194 8-53 (73)
174 PF10205 KLRAQ: Predicted coil 57.2 70 0.0015 27.2 7.7 64 126-190 10-73 (102)
175 PF05266 DUF724: Protein of un 57.1 69 0.0015 29.8 8.5 11 121-131 90-100 (190)
176 PF07106 TBPIP: Tat binding pr 57.0 70 0.0015 28.4 8.3 28 145-172 74-101 (169)
177 PF04859 DUF641: Plant protein 57.0 60 0.0013 28.7 7.6 64 129-192 60-129 (131)
178 PRK00888 ftsB cell division pr 56.8 33 0.00072 28.8 5.8 27 144-170 28-54 (105)
179 COG4238 Murein lipoprotein [Ce 56.8 80 0.0017 25.6 7.6 55 139-193 21-75 (78)
180 PRK00295 hypothetical protein; 56.7 78 0.0017 24.6 7.4 40 156-195 4-43 (68)
181 KOG0994 Extracellular matrix g 56.3 2.6E+02 0.0057 33.4 14.0 72 150-223 1647-1718(1758)
182 PF12777 MT: Microtubule-bindi 56.3 2.2E+02 0.0047 28.4 14.2 108 144-252 9-130 (344)
183 KOG1655 Protein involved in va 56.2 1.9E+02 0.0041 27.6 12.4 18 119-136 10-27 (218)
184 PF10211 Ax_dynein_light: Axon 56.2 1.7E+02 0.0036 27.0 11.1 39 159-197 122-160 (189)
185 PRK04325 hypothetical protein; 56.1 77 0.0017 25.0 7.5 30 143-172 9-38 (74)
186 PRK02793 phi X174 lysis protei 55.9 90 0.0019 24.5 7.8 27 144-170 9-35 (72)
187 PF07798 DUF1640: Protein of u 55.9 1.6E+02 0.0034 26.6 15.9 63 144-206 45-108 (177)
188 COG1340 Uncharacterized archae 55.8 2.3E+02 0.0049 28.4 15.4 58 143-200 158-215 (294)
189 cd00632 Prefoldin_beta Prefold 55.8 45 0.00098 27.5 6.4 29 148-176 68-96 (105)
190 PRK14150 heat shock protein Gr 55.6 1.8E+02 0.0038 27.1 12.1 28 180-207 50-77 (193)
191 PF08826 DMPK_coil: DMPK coile 55.0 78 0.0017 24.4 7.1 44 149-192 17-60 (61)
192 PRK05759 F0F1 ATP synthase sub 54.9 1.1E+02 0.0024 26.5 9.0 115 148-275 33-148 (156)
193 PRK00736 hypothetical protein; 54.9 98 0.0021 24.1 7.7 42 156-197 4-45 (68)
194 PRK14153 heat shock protein Gr 54.8 94 0.002 29.1 9.0 50 145-197 35-84 (194)
195 PRK02793 phi X174 lysis protei 54.7 74 0.0016 25.0 7.1 37 157-193 8-44 (72)
196 TIGR00998 8a0101 efflux pump m 54.7 1.2E+02 0.0027 29.1 10.2 14 283-296 255-268 (334)
197 TIGR03545 conserved hypothetic 54.5 1.4E+02 0.0031 32.1 11.4 62 142-203 190-258 (555)
198 PLN02372 violaxanthin de-epoxi 54.1 1.4E+02 0.003 31.4 10.7 17 176-192 408-424 (455)
199 cd07622 BAR_SNX4 The Bin/Amphi 53.8 1.9E+02 0.0041 26.9 11.8 13 186-198 148-160 (201)
200 PRK04778 septation ring format 53.5 3.1E+02 0.0067 29.3 16.4 33 145-177 378-410 (569)
201 TIGR00606 rad50 rad50. This fa 53.2 2.9E+02 0.0063 32.6 14.5 55 146-200 884-938 (1311)
202 PRK13729 conjugal transfer pil 53.2 37 0.00081 35.9 6.7 32 141-174 62-93 (475)
203 KOG3647 Predicted coiled-coil 53.0 53 0.0012 32.7 7.2 47 150-196 112-158 (338)
204 PRK15422 septal ring assembly 52.9 1.3E+02 0.0027 24.6 10.4 21 169-189 23-43 (79)
205 PRK00846 hypothetical protein; 52.9 86 0.0019 25.3 7.3 28 143-170 13-40 (77)
206 COG1340 Uncharacterized archae 52.9 2.5E+02 0.0055 28.1 12.4 46 146-191 30-75 (294)
207 PF06160 EzrA: Septation ring 52.7 3.2E+02 0.0069 29.2 16.4 55 143-197 379-433 (560)
208 PF10168 Nup88: Nuclear pore c 52.6 1.8E+02 0.004 32.3 12.1 79 144-224 559-637 (717)
209 KOG1962 B-cell receptor-associ 52.5 1.4E+02 0.003 28.6 9.8 42 155-196 149-190 (216)
210 PF04201 TPD52: Tumour protein 52.4 95 0.002 28.5 8.3 39 142-180 28-66 (162)
211 PTZ00446 vacuolar sorting prot 52.2 2E+02 0.0044 26.9 11.6 22 206-227 79-100 (191)
212 PRK04325 hypothetical protein; 52.1 69 0.0015 25.3 6.6 39 156-194 8-46 (74)
213 PF12718 Tropomyosin_1: Tropom 51.7 1.7E+02 0.0037 25.8 14.3 45 143-187 21-65 (143)
214 KOG2911 Uncharacterized conser 51.6 2.1E+02 0.0046 30.1 11.6 77 141-222 231-308 (439)
215 PF10211 Ax_dynein_light: Axon 51.5 2E+02 0.0043 26.5 12.2 38 152-189 122-159 (189)
216 PF12325 TMF_TATA_bd: TATA ele 51.2 1.1E+02 0.0024 26.5 8.2 48 144-191 17-64 (120)
217 PRK10803 tol-pal system protei 51.2 1E+02 0.0023 29.7 9.0 50 143-192 54-103 (263)
218 PF04977 DivIC: Septum formati 51.0 53 0.0011 24.9 5.7 25 159-183 26-50 (80)
219 PF09006 Surfac_D-trimer: Lung 50.9 39 0.00085 24.9 4.5 25 168-192 3-27 (46)
220 COG1196 Smc Chromosome segrega 50.6 4.7E+02 0.01 30.5 17.2 7 41-47 100-106 (1163)
221 KOG0977 Nuclear envelope prote 50.6 3.6E+02 0.0079 29.3 14.5 52 144-195 107-165 (546)
222 PRK14141 heat shock protein Gr 50.4 1.7E+02 0.0037 27.8 10.0 47 148-197 36-82 (209)
223 PRK02224 chromosome segregatio 50.4 3.6E+02 0.0078 29.9 14.1 17 245-261 724-740 (880)
224 TIGR00634 recN DNA repair prot 50.2 2.3E+02 0.0051 30.1 12.2 14 244-257 309-322 (563)
225 PF11068 YlqD: YlqD protein; 49.9 91 0.002 27.4 7.6 14 188-201 59-72 (131)
226 PF01519 DUF16: Protein of unk 49.5 1.4E+02 0.003 25.5 8.3 46 130-179 28-75 (102)
227 KOG0243 Kinesin-like protein [ 49.3 3.3E+02 0.0072 31.8 13.6 27 161-187 445-471 (1041)
228 PRK04778 septation ring format 49.2 2.9E+02 0.0062 29.6 12.7 44 121-164 227-270 (569)
229 PRK14146 heat shock protein Gr 49.2 2.4E+02 0.0052 26.8 11.2 51 145-198 56-106 (215)
230 PF00170 bZIP_1: bZIP transcri 49.2 79 0.0017 23.7 6.3 29 155-183 31-59 (64)
231 PRK08475 F0F1 ATP synthase sub 49.1 2E+02 0.0043 25.8 11.4 73 142-214 52-147 (167)
232 PRK06569 F0F1 ATP synthase sub 48.6 2.1E+02 0.0046 25.9 13.4 58 162-223 67-125 (155)
233 PRK14148 heat shock protein Gr 48.4 2.2E+02 0.0048 26.7 10.4 51 145-198 42-92 (195)
234 PRK14155 heat shock protein Gr 48.4 1.5E+02 0.0032 28.1 9.3 48 148-198 18-65 (208)
235 smart00787 Spc7 Spc7 kinetocho 48.3 1.6E+02 0.0034 29.5 9.9 13 253-265 285-297 (312)
236 PRK11546 zraP zinc resistance 48.0 61 0.0013 29.1 6.3 42 142-183 60-108 (143)
237 TIGR01843 type_I_hlyD type I s 48.0 2.8E+02 0.0061 27.2 15.6 13 284-296 325-337 (423)
238 COG3599 DivIVA Cell division i 47.8 1.6E+02 0.0034 28.0 9.4 58 149-206 36-98 (212)
239 COG2900 SlyX Uncharacterized p 47.6 1.2E+02 0.0025 24.4 7.1 48 142-189 7-54 (72)
240 PF02388 FemAB: FemAB family; 47.5 1.1E+02 0.0023 31.3 8.9 28 243-270 336-365 (406)
241 KOG0161 Myosin class II heavy 47.4 3.9E+02 0.0085 33.4 14.5 54 143-196 1512-1565(1930)
242 COG0711 AtpF F0F1-type ATP syn 47.4 2.1E+02 0.0045 25.5 13.5 80 143-222 37-124 (161)
243 PF00038 Filament: Intermediat 47.1 2.7E+02 0.0058 26.7 13.5 41 151-191 196-236 (312)
244 PRK14139 heat shock protein Gr 46.9 2.4E+02 0.0053 26.2 12.6 50 145-197 34-83 (185)
245 PRK14147 heat shock protein Gr 46.6 1.9E+02 0.0041 26.5 9.5 45 151-198 26-70 (172)
246 KOG4643 Uncharacterized coiled 46.5 3.6E+02 0.0079 31.6 13.2 18 235-252 274-291 (1195)
247 TIGR02680 conserved hypothetic 46.5 5.9E+02 0.013 30.5 16.2 32 240-271 383-414 (1353)
248 PRK00888 ftsB cell division pr 46.4 84 0.0018 26.4 6.6 34 159-192 29-62 (105)
249 COG4942 Membrane-bound metallo 46.2 2.4E+02 0.0052 29.6 11.2 20 208-227 154-173 (420)
250 TIGR03752 conj_TIGR03752 integ 45.8 1.8E+02 0.0039 30.9 10.3 50 144-200 60-109 (472)
251 PF13094 CENP-Q: CENP-Q, a CEN 45.7 2.1E+02 0.0046 25.1 11.8 40 149-188 33-72 (160)
252 PF08912 Rho_Binding: Rho Bind 45.7 1.5E+02 0.0033 23.5 9.6 29 151-179 4-32 (69)
253 cd07680 F-BAR_PACSIN1 The F-BA 45.4 3E+02 0.0065 26.8 13.2 47 157-203 168-214 (258)
254 PF04201 TPD52: Tumour protein 45.2 2.5E+02 0.0054 25.8 11.8 37 158-194 30-66 (162)
255 PF05791 Bacillus_HBL: Bacillu 45.1 2.4E+02 0.0053 25.7 10.8 49 157-205 103-151 (184)
256 COG3879 Uncharacterized protei 44.9 1.1E+02 0.0025 29.7 8.1 22 244-265 140-161 (247)
257 PF09304 Cortex-I_coil: Cortex 44.9 2E+02 0.0044 24.7 9.2 35 161-195 41-75 (107)
258 PF10234 Cluap1: Clusterin-ass 44.8 89 0.0019 30.8 7.4 46 150-195 169-214 (267)
259 PF04799 Fzo_mitofusin: fzo-li 44.6 1E+02 0.0022 28.5 7.3 44 146-193 123-166 (171)
260 PF06156 DUF972: Protein of un 44.4 1.2E+02 0.0026 25.7 7.3 27 159-185 10-36 (107)
261 PTZ00454 26S protease regulato 44.3 84 0.0018 32.2 7.5 6 251-256 170-175 (398)
262 PRK14145 heat shock protein Gr 44.2 2.8E+02 0.006 26.1 10.8 53 143-198 45-97 (196)
263 PF04100 Vps53_N: Vps53-like, 44.2 3.7E+02 0.0079 27.5 12.1 30 162-191 62-91 (383)
264 KOG4848 Extracellular matrix-a 44.1 1.4E+02 0.0031 28.4 8.3 12 63-74 72-83 (225)
265 cd07667 BAR_SNX30 The Bin/Amph 43.8 3.1E+02 0.0068 26.6 11.8 15 209-223 193-207 (240)
266 PF09432 THP2: Tho complex sub 43.7 2.2E+02 0.0048 25.3 8.9 38 118-160 32-69 (132)
267 TIGR02302 aProt_lowcomp conser 43.6 2.5E+02 0.0055 32.0 11.6 79 145-223 498-606 (851)
268 PF15066 CAGE1: Cancer-associa 43.5 1.4E+02 0.003 31.9 8.9 38 167-204 481-518 (527)
269 KOG2264 Exostosin EXT1L [Signa 43.4 1E+02 0.0022 33.8 8.1 46 143-188 93-138 (907)
270 PF10267 Tmemb_cc2: Predicted 43.2 3.4E+02 0.0074 28.2 11.7 41 184-225 275-315 (395)
271 PF12729 4HB_MCP_1: Four helix 43.2 1.9E+02 0.0041 23.9 12.9 60 133-193 65-124 (181)
272 TIGR00606 rad50 rad50. This fa 43.1 6.3E+02 0.014 29.9 17.3 41 144-184 823-863 (1311)
273 PHA01750 hypothetical protein 42.6 84 0.0018 25.0 5.5 34 144-177 35-69 (75)
274 PF05276 SH3BP5: SH3 domain-bi 42.5 1.9E+02 0.0042 27.9 9.3 103 164-277 21-125 (239)
275 TIGR02338 gimC_beta prefoldin, 42.4 85 0.0018 26.1 6.1 28 165-192 75-102 (110)
276 PF01920 Prefoldin_2: Prefoldi 42.3 88 0.0019 24.9 6.0 27 149-175 68-94 (106)
277 COG1322 Predicted nuclease of 42.2 4.4E+02 0.0096 27.8 13.7 60 159-218 79-138 (448)
278 PF11365 DUF3166: Protein of u 42.0 87 0.0019 26.3 6.0 39 145-183 3-41 (96)
279 PRK14140 heat shock protein Gr 42.0 3E+02 0.0064 25.8 10.4 46 149-197 43-88 (191)
280 TIGR00998 8a0101 efflux pump m 42.0 1.2E+02 0.0025 29.2 7.9 43 149-191 93-135 (334)
281 PF09731 Mitofilin: Mitochondr 41.8 4.5E+02 0.0098 27.8 13.0 19 142-160 250-268 (582)
282 PF13874 Nup54: Nucleoporin co 41.6 2.2E+02 0.0049 24.8 8.9 42 153-194 40-81 (141)
283 KOG0971 Microtubule-associated 41.5 6.4E+02 0.014 29.5 14.2 104 126-229 229-353 (1243)
284 PF09755 DUF2046: Uncharacteri 41.4 3.9E+02 0.0085 27.0 11.7 20 165-184 49-68 (310)
285 PF13851 GAS: Growth-arrest sp 41.0 3E+02 0.0065 25.6 15.4 30 149-178 47-76 (201)
286 KOG4196 bZIP transcription fac 40.9 82 0.0018 28.1 5.9 38 147-184 78-115 (135)
287 PF00261 Tropomyosin: Tropomyo 40.8 3.2E+02 0.0069 25.7 17.8 47 144-190 121-167 (237)
288 PRK10803 tol-pal system protei 40.7 1E+02 0.0022 29.7 7.2 55 142-196 39-93 (263)
289 PF10186 Atg14: UV radiation r 40.6 3.1E+02 0.0068 25.6 16.6 21 240-260 141-162 (302)
290 KOG4398 Predicted coiled-coil 40.1 3.3E+02 0.0071 27.5 10.4 58 125-187 2-59 (359)
291 PF05278 PEARLI-4: Arabidopsis 40.0 1.5E+02 0.0033 29.2 8.2 42 155-196 191-232 (269)
292 KOG0161 Myosin class II heavy 39.8 8.5E+02 0.018 30.7 15.7 21 206-226 990-1010(1930)
293 PF13779 DUF4175: Domain of un 39.7 1.5E+02 0.0032 33.6 9.1 41 184-224 537-577 (820)
294 PF05103 DivIVA: DivIVA protei 39.5 15 0.00033 30.8 1.1 10 188-197 77-86 (131)
295 PF07888 CALCOCO1: Calcium bin 39.4 5.4E+02 0.012 28.0 15.0 36 153-188 160-195 (546)
296 PF14817 HAUS5: HAUS augmin-li 39.4 1.1E+02 0.0023 33.7 7.7 50 144-193 80-129 (632)
297 PF13514 AAA_27: AAA domain 39.3 6.7E+02 0.014 29.1 15.5 15 242-256 313-327 (1111)
298 PF01519 DUF16: Protein of unk 39.0 2.5E+02 0.0054 24.0 8.7 34 161-194 64-97 (102)
299 PF06476 DUF1090: Protein of u 38.9 2.5E+02 0.0055 24.1 9.5 26 132-157 32-57 (115)
300 KOG2391 Vacuolar sorting prote 38.8 4.1E+02 0.0088 27.4 11.1 67 130-196 212-278 (365)
301 PF05266 DUF724: Protein of un 38.7 2.8E+02 0.006 25.8 9.4 69 122-190 67-150 (190)
302 COG3937 Uncharacterized conser 38.4 1E+02 0.0022 26.5 5.9 57 124-180 46-106 (108)
303 smart00338 BRLZ basic region l 38.2 1.4E+02 0.003 22.4 6.2 33 160-192 29-61 (65)
304 PF07798 DUF1640: Protein of u 38.2 3E+02 0.0065 24.8 12.6 33 143-175 58-91 (177)
305 PF04849 HAP1_N: HAP1 N-termin 38.0 2.8E+02 0.0061 27.9 9.8 51 157-207 206-256 (306)
306 KOG4025 Putative apoptosis rel 37.7 80 0.0017 29.4 5.5 31 175-205 69-102 (207)
307 PRK03947 prefoldin subunit alp 37.6 1.3E+02 0.0029 25.7 6.8 35 150-184 101-135 (140)
308 COG0497 RecN ATPase involved i 37.5 1.7E+02 0.0036 31.8 8.7 52 152-203 327-381 (557)
309 PF08580 KAR9: Yeast cortical 37.4 6E+02 0.013 28.3 13.1 58 167-227 238-295 (683)
310 PRK13169 DNA replication intia 36.8 1.8E+02 0.004 24.9 7.3 44 144-187 9-52 (110)
311 PRK00846 hypothetical protein; 36.7 2.3E+02 0.0049 22.9 7.9 44 155-198 11-54 (77)
312 KOG0810 SNARE protein Syntaxin 36.5 4.4E+02 0.0096 26.3 11.0 46 171-216 130-177 (297)
313 PF04136 Sec34: Sec34-like fam 36.5 3.1E+02 0.0068 24.5 14.5 44 211-254 95-148 (157)
314 PF08581 Tup_N: Tup N-terminal 36.3 2.3E+02 0.005 22.9 7.5 38 162-199 30-67 (79)
315 PRK06443 chorismate mutase; Va 36.3 3.6E+02 0.0078 25.1 10.5 57 241-298 92-150 (177)
316 PRK15365 type III secretion sy 36.3 2.7E+02 0.006 23.7 9.1 81 172-256 10-93 (107)
317 PF06717 DUF1202: Protein of u 36.3 78 0.0017 31.6 5.6 39 142-180 137-175 (308)
318 KOG4673 Transcription factor T 36.1 1.3E+02 0.0028 33.7 7.6 61 136-196 859-922 (961)
319 PF05667 DUF812: Protein of un 36.0 6.1E+02 0.013 27.7 13.3 30 143-172 454-483 (594)
320 KOG2077 JNK/SAPK-associated pr 35.9 1.2E+02 0.0027 33.2 7.3 48 142-189 328-375 (832)
321 PF05384 DegS: Sensor protein 35.8 3.4E+02 0.0074 24.7 12.7 16 212-227 102-117 (159)
322 KOG4603 TBP-1 interacting prot 35.6 3.8E+02 0.0083 25.2 11.6 8 251-258 193-200 (201)
323 cd00632 Prefoldin_beta Prefold 35.3 1.4E+02 0.003 24.5 6.3 35 161-195 67-101 (105)
324 PF08898 DUF1843: Domain of un 35.2 1.1E+02 0.0024 23.2 5.0 44 133-176 7-50 (53)
325 KOG2264 Exostosin EXT1L [Signa 35.2 1.1E+02 0.0024 33.5 6.9 49 147-195 90-138 (907)
326 PRK14157 heat shock protein Gr 35.1 4.2E+02 0.0091 25.5 11.6 48 147-197 81-128 (227)
327 PRK10476 multidrug resistance 35.1 4.4E+02 0.0095 25.8 11.6 10 283-292 259-268 (346)
328 KOG0860 Synaptobrevin/VAMP-lik 35.1 2.9E+02 0.0064 24.0 8.3 56 144-199 30-85 (116)
329 COG3879 Uncharacterized protei 34.8 3.9E+02 0.0085 26.2 10.0 25 170-194 56-80 (247)
330 KOG0994 Extracellular matrix g 34.7 3E+02 0.0064 33.0 10.3 61 144-204 1416-1476(1758)
331 PF12999 PRKCSH-like: Glucosid 34.7 3.3E+02 0.0071 25.3 9.1 18 121-138 114-131 (176)
332 PF00038 Filament: Intermediat 34.7 4.2E+02 0.0091 25.4 12.3 42 156-197 53-94 (312)
333 TIGR03545 conserved hypothetic 34.4 3.2E+02 0.0068 29.6 10.2 40 124-164 164-205 (555)
334 PF08581 Tup_N: Tup N-terminal 34.3 2.5E+02 0.0054 22.7 11.4 44 151-194 5-48 (79)
335 TIGR01005 eps_transp_fam exopo 34.2 6.6E+02 0.014 27.5 15.0 20 181-200 319-338 (754)
336 KOG4031 Vesicle coat protein c 34.2 4.3E+02 0.0093 25.4 12.0 9 71-79 53-61 (216)
337 cd00176 SPEC Spectrin repeats, 34.2 2.9E+02 0.0064 23.5 15.0 58 167-227 75-132 (213)
338 KOG1510 RNA polymerase II holo 33.9 2.5E+02 0.0053 25.3 7.8 46 138-184 80-125 (139)
339 PF10146 zf-C4H2: Zinc finger- 33.9 4.3E+02 0.0094 25.3 14.7 26 237-262 86-112 (230)
340 KOG0933 Structural maintenance 33.8 8.6E+02 0.019 28.7 16.1 14 178-191 815-828 (1174)
341 COG1422 Predicted membrane pro 33.4 1.9E+02 0.0042 27.4 7.4 20 165-184 73-92 (201)
342 PRK14144 heat shock protein Gr 33.3 4.2E+02 0.0091 25.0 11.8 49 147-198 49-97 (199)
343 TIGR03017 EpsF chain length de 33.2 5.1E+02 0.011 26.1 11.2 104 152-255 256-365 (444)
344 PF02646 RmuC: RmuC family; I 33.1 3.4E+02 0.0074 26.6 9.6 17 121-137 210-226 (304)
345 PF15290 Syntaphilin: Golgi-lo 33.0 4.3E+02 0.0093 26.6 10.0 24 143-166 75-98 (305)
346 cd07681 F-BAR_PACSIN3 The F-BA 32.9 4.8E+02 0.01 25.5 15.4 50 156-205 167-216 (258)
347 PF14193 DUF4315: Domain of un 32.7 1.2E+02 0.0026 24.8 5.2 17 157-173 8-24 (83)
348 cd07651 F-BAR_PombeCdc15_like 32.7 4.1E+02 0.009 24.7 14.9 42 152-193 102-143 (236)
349 PF11544 Spc42p: Spindle pole 32.5 2.7E+02 0.0059 22.6 8.0 46 146-191 8-53 (76)
350 COG1730 GIM5 Predicted prefold 32.5 2.5E+02 0.0055 25.1 7.8 27 161-187 105-131 (145)
351 PRK14127 cell division protein 32.4 1.5E+02 0.0032 25.5 6.0 43 146-195 26-68 (109)
352 cd00890 Prefoldin Prefoldin is 32.4 1.4E+02 0.0031 24.6 6.0 25 153-177 97-121 (129)
353 PF03961 DUF342: Protein of un 32.4 2.9E+02 0.0064 28.4 9.4 12 151-162 342-353 (451)
354 KOG4571 Activating transcripti 32.3 2.1E+02 0.0046 28.6 7.9 32 160-191 251-282 (294)
355 COG1842 PspA Phage shock prote 32.3 4.5E+02 0.0098 25.1 14.9 76 146-225 27-102 (225)
356 PF03961 DUF342: Protein of un 32.0 2.4E+02 0.0052 29.1 8.7 26 283-309 420-445 (451)
357 cd07624 BAR_SNX7_30 The Bin/Am 32.0 4E+02 0.0088 24.4 12.1 21 183-203 146-166 (200)
358 PF00957 Synaptobrevin: Synapt 31.9 2.6E+02 0.0055 22.1 12.0 58 143-200 3-60 (89)
359 PF08781 DP: Transcription fac 31.8 1.9E+02 0.0041 26.0 6.8 41 151-195 2-42 (142)
360 PF12325 TMF_TATA_bd: TATA ele 31.4 3.5E+02 0.0075 23.4 14.3 54 142-195 29-85 (120)
361 PF07200 Mod_r: Modifier of ru 31.3 3.4E+02 0.0074 23.4 13.4 45 145-189 29-73 (150)
362 PLN02939 transferase, transfer 31.3 9E+02 0.02 28.2 15.2 13 285-297 514-526 (977)
363 PF03670 UPF0184: Uncharacteri 31.3 2.5E+02 0.0055 23.1 6.9 33 144-176 27-59 (83)
364 TIGR02977 phageshock_pspA phag 31.3 4.4E+02 0.0094 24.5 14.9 11 125-135 28-38 (219)
365 PF08336 P4Ha_N: Prolyl 4-Hydr 31.3 3.3E+02 0.0072 23.2 10.2 16 182-197 68-83 (134)
366 PRK03947 prefoldin subunit alp 31.3 1.8E+02 0.004 24.9 6.6 26 152-177 96-121 (140)
367 PF09738 DUF2051: Double stran 31.2 2.5E+02 0.0055 28.0 8.3 13 126-138 86-98 (302)
368 PF11262 Tho2: Transcription f 31.0 2E+02 0.0043 28.3 7.6 41 162-202 51-91 (298)
369 PF06705 SF-assemblin: SF-asse 31.0 4.6E+02 0.01 24.7 14.9 19 235-253 225-243 (247)
370 PF13747 DUF4164: Domain of un 30.9 3E+02 0.0064 22.5 11.0 28 167-194 35-62 (89)
371 PRK14156 heat shock protein Gr 30.7 4.4E+02 0.0094 24.4 9.3 43 152-197 36-78 (177)
372 PF14388 DUF4419: Domain of un 30.4 89 0.0019 30.9 5.0 39 184-226 144-184 (299)
373 PF05377 FlaC_arch: Flagella a 29.8 2.1E+02 0.0046 21.8 5.8 26 153-178 3-28 (55)
374 TIGR02338 gimC_beta prefoldin, 29.7 2.1E+02 0.0046 23.8 6.5 31 147-177 71-101 (110)
375 PF09730 BicD: Microtubule-ass 29.5 3.1E+02 0.0068 30.7 9.4 71 134-204 18-88 (717)
376 PF05701 WEMBL: Weak chloropla 29.3 7.2E+02 0.016 26.4 14.3 115 142-256 210-333 (522)
377 PF12128 DUF3584: Protein of u 29.2 1E+03 0.022 28.1 16.4 22 238-259 749-770 (1201)
378 KOG4005 Transcription factor X 29.0 4.4E+02 0.0095 26.0 9.2 21 143-163 90-110 (292)
379 TIGR02231 conserved hypothetic 28.9 6.1E+02 0.013 26.6 11.2 32 144-175 72-103 (525)
380 KOG2629 Peroxisomal membrane a 28.8 4.9E+02 0.011 26.2 9.7 39 152-190 131-169 (300)
381 COG5570 Uncharacterized small 28.8 92 0.002 23.7 3.6 22 172-193 34-55 (57)
382 KOG3990 Uncharacterized conser 28.8 2.4E+02 0.0052 28.0 7.4 14 121-134 218-231 (305)
383 KOG0999 Microtubule-associated 28.7 1.9E+02 0.0041 31.7 7.2 55 144-198 108-169 (772)
384 cd07596 BAR_SNX The Bin/Amphip 28.7 4.1E+02 0.0089 23.4 10.9 22 160-181 148-169 (218)
385 PF06657 Cep57_MT_bd: Centroso 28.5 2.4E+02 0.0052 22.6 6.3 11 173-183 26-36 (79)
386 PF09486 HrpB7: Bacterial type 28.5 3.2E+02 0.0069 24.9 7.8 48 149-196 85-132 (158)
387 PLN03188 kinesin-12 family pro 28.3 2.5E+02 0.0053 33.5 8.6 16 180-195 969-984 (1320)
388 KOG0018 Structural maintenance 28.0 1.1E+03 0.023 28.0 14.7 91 165-261 677-768 (1141)
389 PF04728 LPP: Lipoprotein leuc 27.9 2.8E+02 0.006 21.2 7.9 26 152-177 5-30 (56)
390 KOG0018 Structural maintenance 27.8 6.7E+02 0.015 29.6 11.7 96 161-261 811-906 (1141)
391 PF07544 Med9: RNA polymerase 27.7 1.3E+02 0.0029 24.0 4.8 24 170-193 58-81 (83)
392 KOG1772 Vacuolar H+-ATPase V1 27.3 4E+02 0.0087 23.0 7.7 54 155-208 12-65 (108)
393 PRK09413 IS2 repressor TnpA; R 27.3 1.5E+02 0.0032 25.0 5.2 36 155-195 76-111 (121)
394 PF05278 PEARLI-4: Arabidopsis 27.2 3.4E+02 0.0073 26.9 8.2 33 150-182 200-232 (269)
395 PF10359 Fmp27_WPPW: RNA pol I 27.2 2E+02 0.0044 30.1 7.2 33 162-194 198-230 (475)
396 PF08647 BRE1: BRE1 E3 ubiquit 27.1 3.5E+02 0.0076 22.1 11.9 42 150-191 3-44 (96)
397 PF10805 DUF2730: Protein of u 27.1 3.5E+02 0.0075 22.6 7.4 23 144-166 36-58 (106)
398 KOG4674 Uncharacterized conser 26.9 4.7E+02 0.01 32.5 10.8 52 142-193 1327-1382(1822)
399 PF03670 UPF0184: Uncharacteri 26.9 3.6E+02 0.0078 22.2 7.1 46 151-196 27-72 (83)
400 PF08649 DASH_Dad1: DASH compl 26.9 3E+02 0.0064 21.2 7.1 56 186-253 2-57 (58)
401 PHA01794 hypothetical protein 26.9 4.6E+02 0.0099 23.4 10.7 24 208-231 89-112 (134)
402 cd07627 BAR_Vps5p The Bin/Amph 26.8 5.1E+02 0.011 23.9 10.9 11 179-189 144-154 (216)
403 PF11855 DUF3375: Protein of u 26.7 3.3E+02 0.0072 28.6 8.7 105 123-227 99-208 (478)
404 KOG4673 Transcription factor T 26.7 3.4E+02 0.0074 30.6 8.8 33 161-193 729-761 (961)
405 PF05600 DUF773: Protein of un 26.5 6E+02 0.013 27.1 10.6 66 122-187 93-168 (507)
406 TIGR00293 prefoldin, archaeal 26.2 2.3E+02 0.005 23.7 6.2 21 161-181 97-117 (126)
407 COG4477 EzrA Negative regulato 26.1 3.1E+02 0.0067 29.8 8.3 54 144-197 383-436 (570)
408 PF10805 DUF2730: Protein of u 26.0 3.9E+02 0.0085 22.3 8.2 40 154-193 39-80 (106)
409 PRK14127 cell division protein 25.9 2E+02 0.0044 24.6 5.7 37 147-183 34-70 (109)
410 PF12761 End3: Actin cytoskele 25.9 3.8E+02 0.0082 25.3 8.0 11 213-223 162-172 (195)
411 KOG1029 Endocytic adaptor prot 25.8 1.1E+03 0.023 27.3 15.0 26 165-190 487-512 (1118)
412 PF05103 DivIVA: DivIVA protei 25.7 23 0.0005 29.6 0.0 30 147-176 22-51 (131)
413 PF04931 DNA_pol_phi: DNA poly 25.5 2.7E+02 0.0058 31.0 8.2 6 132-137 707-712 (784)
414 PF15070 GOLGA2L5: Putative go 25.4 9.3E+02 0.02 26.5 13.1 34 144-177 30-63 (617)
415 KOG4438 Centromere-associated 25.4 8.3E+02 0.018 25.9 13.9 43 157-199 173-215 (446)
416 KOG0999 Microtubule-associated 25.4 3.5E+02 0.0076 29.8 8.5 19 169-187 154-172 (772)
417 PF09340 NuA4: Histone acetylt 25.2 1.7E+02 0.0037 23.5 4.9 32 151-182 3-34 (80)
418 PF14584 DUF4446: Protein of u 25.2 3.3E+02 0.0071 24.4 7.3 17 127-143 26-42 (151)
419 TIGR03825 FliH_bacil flagellar 25.1 6E+02 0.013 24.1 16.6 39 176-214 116-154 (255)
420 PF07334 IFP_35_N: Interferon- 24.9 1.3E+02 0.0029 24.3 4.2 16 156-171 6-21 (76)
421 PRK05771 V-type ATP synthase s 24.8 2.8E+02 0.0061 30.0 8.0 61 124-184 53-127 (646)
422 PRK13182 racA polar chromosome 24.8 5.3E+02 0.011 23.6 8.7 17 180-196 120-136 (175)
423 KOG1029 Endocytic adaptor prot 24.7 5E+02 0.011 29.8 9.7 17 283-299 712-733 (1118)
424 PF04799 Fzo_mitofusin: fzo-li 24.7 1.9E+02 0.0042 26.7 5.8 67 115-181 99-168 (171)
425 PF10473 CENP-F_leu_zip: Leuci 24.7 5E+02 0.011 23.1 14.7 53 142-194 2-54 (140)
426 PF02994 Transposase_22: L1 tr 24.6 3.2E+02 0.0069 27.8 7.9 11 296-306 259-269 (370)
427 PRK06800 fliH flagellar assemb 24.6 6.2E+02 0.013 24.1 13.9 55 150-204 52-106 (228)
428 KOG4674 Uncharacterized conser 24.5 1.5E+03 0.032 28.5 16.0 64 138-201 1302-1365(1822)
429 PF14257 DUF4349: Domain of un 24.5 3.4E+02 0.0075 25.6 7.7 76 117-192 98-183 (262)
430 PRK10698 phage shock protein P 24.4 6E+02 0.013 23.9 14.8 67 127-193 8-74 (222)
431 PF05470 eIF-3c_N: Eukaryotic 24.3 3.2E+02 0.007 29.8 8.3 46 178-223 46-91 (595)
432 PF13166 AAA_13: AAA domain 24.1 9.2E+02 0.02 25.9 14.8 17 244-260 460-476 (712)
433 KOG0964 Structural maintenance 24.1 1.2E+03 0.027 27.5 15.9 172 126-303 395-577 (1200)
434 PF06717 DUF1202: Protein of u 23.9 2E+02 0.0043 28.9 6.0 45 146-190 134-178 (308)
435 COG4224 Uncharacterized protei 23.9 89 0.0019 25.3 3.0 28 241-270 37-64 (77)
436 PF03904 DUF334: Domain of unk 23.8 6.8E+02 0.015 24.3 15.1 12 261-272 168-179 (230)
437 cd07665 BAR_SNX1 The Bin/Amphi 23.6 6.4E+02 0.014 24.2 9.3 19 178-196 159-177 (234)
438 PF15397 DUF4618: Domain of un 23.5 7.2E+02 0.016 24.5 16.4 35 123-157 37-77 (258)
439 PLN03229 acetyl-coenzyme A car 23.5 9E+02 0.02 27.4 11.4 35 242-276 611-652 (762)
440 PF14988 DUF4515: Domain of un 23.5 6.2E+02 0.013 23.7 10.7 33 134-166 38-70 (206)
441 PF04129 Vps52: Vps52 / Sac2 f 23.4 9E+02 0.019 25.6 12.5 37 158-194 22-58 (508)
442 KOG0996 Structural maintenance 23.3 1.3E+03 0.029 27.6 14.7 42 266-309 627-673 (1293)
443 PF13514 AAA_27: AAA domain 23.3 1E+03 0.022 27.6 12.5 20 238-257 756-775 (1111)
444 PF09726 Macoilin: Transmembra 23.2 1.1E+03 0.023 26.4 13.8 36 158-193 546-581 (697)
445 KOG0240 Kinesin (SMY1 subfamil 23.0 1E+03 0.023 26.2 14.0 77 144-222 422-498 (607)
446 PF07989 Microtub_assoc: Micro 23.0 2.5E+02 0.0053 22.3 5.4 19 148-166 5-23 (75)
447 PRK09343 prefoldin subunit bet 23.0 1.5E+02 0.0033 25.3 4.6 34 161-194 75-108 (121)
448 KOG0979 Structural maintenance 22.9 1.3E+03 0.028 27.2 14.9 44 151-194 182-225 (1072)
449 PF13874 Nup54: Nucleoporin co 22.8 5.1E+02 0.011 22.5 8.0 33 161-193 69-101 (141)
450 PRK11147 ABC transporter ATPas 22.7 1.9E+02 0.0042 31.0 6.3 16 155-170 573-588 (635)
451 cd07637 BAR_ACAP3 The Bin/Amph 22.7 6.3E+02 0.014 23.6 11.3 37 179-215 65-101 (200)
452 PF03962 Mnd1: Mnd1 family; I 22.7 6.1E+02 0.013 23.3 12.8 55 148-202 67-127 (188)
453 KOG0979 Structural maintenance 22.6 1.3E+03 0.028 27.2 15.7 60 139-198 646-708 (1072)
454 KOG4302 Microtubule-associated 22.4 5.8E+02 0.012 28.4 9.7 34 242-276 184-217 (660)
455 KOG0288 WD40 repeat protein Ti 22.4 8.6E+02 0.019 25.8 10.4 82 127-212 36-117 (459)
456 PF12761 End3: Actin cytoskele 22.4 4.8E+02 0.01 24.7 8.0 8 197-204 136-143 (195)
457 PRK00106 hypothetical protein; 22.3 7.3E+02 0.016 26.8 10.4 16 286-301 224-239 (535)
458 PF11083 Streptin-Immun: Lanti 22.2 1.4E+02 0.0031 25.3 4.1 34 162-195 57-90 (99)
459 PF06818 Fez1: Fez1; InterPro 22.2 6E+02 0.013 24.1 8.6 44 161-204 135-178 (202)
460 KOG4171 Adenylate/guanylate ki 22.1 4.3E+02 0.0094 29.4 8.7 32 236-267 464-495 (671)
461 PF04880 NUDE_C: NUDE protein, 22.1 1.1E+02 0.0024 28.0 3.7 21 146-166 3-23 (166)
462 TIGR02209 ftsL_broad cell divi 22.1 3.7E+02 0.0081 20.7 7.0 26 164-189 31-56 (85)
463 PHA00727 hypothetical protein 22.0 7.2E+02 0.016 23.9 10.5 46 176-221 55-100 (278)
464 TIGR00219 mreC rod shape-deter 22.0 2.7E+02 0.0058 27.2 6.6 9 267-275 175-183 (283)
465 PF02520 DUF148: Domain of unk 22.0 4.5E+02 0.0099 21.6 9.1 78 166-248 18-95 (113)
466 KOG3478 Prefoldin subunit 6, K 21.9 3.4E+02 0.0075 23.7 6.3 47 142-188 68-114 (120)
467 PF02996 Prefoldin: Prefoldin 21.9 2.7E+02 0.0058 22.8 5.7 41 148-188 75-115 (120)
468 KOG4593 Mitotic checkpoint pro 21.9 7.6E+02 0.016 27.7 10.4 68 145-212 146-213 (716)
469 TIGR02209 ftsL_broad cell divi 21.9 2.9E+02 0.0062 21.3 5.6 36 155-190 22-57 (85)
470 PF14282 FlxA: FlxA-like prote 21.8 4.7E+02 0.01 21.8 8.1 62 139-200 15-80 (106)
471 cd00584 Prefoldin_alpha Prefol 21.8 3.2E+02 0.007 22.9 6.3 41 148-188 85-125 (129)
472 PF11471 Sugarporin_N: Maltopo 21.8 1.9E+02 0.0042 22.1 4.4 30 162-191 30-59 (60)
473 KOG4010 Coiled-coil protein TP 21.7 2.7E+02 0.0059 26.4 6.1 39 156-194 43-81 (208)
474 KOG0978 E3 ubiquitin ligase in 21.7 3.5E+02 0.0077 30.2 8.0 72 142-213 565-637 (698)
475 PF09403 FadA: Adhesion protei 21.7 5.5E+02 0.012 22.5 11.4 101 146-246 23-124 (126)
476 smart00502 BBC B-Box C-termina 21.6 4.2E+02 0.0091 21.1 15.5 112 142-253 13-126 (127)
477 PF08946 Osmo_CC: Osmosensory 21.6 1.9E+02 0.0042 21.3 4.1 40 140-179 1-41 (46)
478 KOG4571 Activating transcripti 21.5 2.2E+02 0.0049 28.5 5.9 40 153-192 244-283 (294)
479 cd04776 HTH_GnyR Helix-Turn-He 21.5 2.7E+02 0.0059 23.4 5.8 59 122-180 57-117 (118)
480 TIGR00513 accA acetyl-CoA carb 21.5 1.4E+02 0.0031 29.9 4.7 76 140-216 7-86 (316)
481 KOG0996 Structural maintenance 21.5 1.5E+03 0.032 27.3 13.0 109 142-251 418-526 (1293)
482 PF14584 DUF4446: Protein of u 21.5 2.5E+02 0.0054 25.2 5.8 76 180-265 18-93 (151)
483 TIGR02231 conserved hypothetic 21.4 4.4E+02 0.0096 27.6 8.5 64 127-190 101-171 (525)
484 PF00261 Tropomyosin: Tropomyo 21.4 6.9E+02 0.015 23.5 13.2 95 142-248 140-234 (237)
485 PF12795 MscS_porin: Mechanose 21.4 4E+02 0.0087 25.0 7.5 52 145-196 80-131 (240)
486 PF08172 CASP_C: CASP C termin 21.3 4.5E+02 0.0099 25.4 7.9 51 152-202 81-131 (248)
487 PF01920 Prefoldin_2: Prefoldi 21.3 4E+02 0.0086 21.1 6.5 42 154-195 59-100 (106)
488 cd00890 Prefoldin Prefoldin is 21.3 3.8E+02 0.0083 22.0 6.6 43 154-196 84-126 (129)
489 CHL00198 accA acetyl-CoA carbo 21.3 1.4E+02 0.0031 30.1 4.5 76 140-216 10-89 (322)
490 PRK05759 F0F1 ATP synthase sub 21.3 5.3E+02 0.012 22.1 14.8 100 124-227 27-127 (156)
491 PHA02109 hypothetical protein 21.2 2.4E+02 0.0052 26.6 5.6 39 152-190 188-226 (233)
492 TIGR01242 26Sp45 26S proteasom 21.2 2.1E+02 0.0045 28.4 5.7 38 159-196 1-38 (364)
493 PF14193 DUF4315: Domain of un 21.2 2.3E+02 0.005 23.1 5.0 33 151-183 2-34 (83)
494 cd07656 F-BAR_srGAP The F-BAR 21.1 7.3E+02 0.016 23.7 12.9 93 124-221 131-233 (241)
495 PF11348 DUF3150: Protein of u 21.0 3.6E+02 0.0079 26.1 7.2 61 163-225 80-141 (257)
496 PF13094 CENP-Q: CENP-Q, a CEN 20.9 5.7E+02 0.012 22.4 9.2 59 145-203 22-80 (160)
497 PF11853 DUF3373: Protein of u 20.9 76 0.0017 33.8 2.7 35 150-185 25-59 (489)
498 PRK12704 phosphodiesterase; Pr 20.8 1E+03 0.023 25.4 12.5 94 127-220 52-147 (520)
499 PF13600 DUF4140: N-terminal d 20.8 1.9E+02 0.0041 23.4 4.5 37 141-177 68-104 (104)
500 PRK12705 hypothetical protein; 20.8 1.1E+03 0.023 25.4 11.7 87 127-213 58-151 (508)
No 1
>PRK14143 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1e-47 Score=360.45 Aligned_cols=166 Identities=47% Similarity=0.809 Sum_probs=151.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhh
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINN 239 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~e 239 (347)
..|+.++..|++++++++++|+|++|||+|||||+.||++++++|++++|+++||||+|||+||+.++.........+.+
T Consensus 70 ~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~ 149 (238)
T PRK14143 70 AQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHR 149 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHHHH
Confidence 34666778888999999999999999999999999999999999999999999999999999999887544444567899
Q ss_pred HHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecCCCCCCC
Q 019043 240 SYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKP 319 (347)
Q Consensus 240 g~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P~~~~~ 319 (347)
||+||+++|.++|+++||+.|+++|++|||++|+||++++++++++|+|++|+|+||+|||||||||||+|+++|+|..+
T Consensus 150 Gve~i~k~l~~~L~k~GV~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRpA~V~Vsk~~~~~~~ 229 (238)
T PRK14143 150 SYQGLYKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRVLRHAMVKVSMGPGPSSP 229 (238)
T ss_pred HHHHHHHHHHHHHHHCCCeeeCCCCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCEecccceEEECCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred CCCCCC
Q 019043 320 KEEQPS 325 (347)
Q Consensus 320 ~~~~~~ 325 (347)
.+..+.
T Consensus 230 ~~~~~~ 235 (238)
T PRK14143 230 AEEDQA 235 (238)
T ss_pred CCcccc
Confidence 654443
No 2
>PRK14155 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.8e-46 Score=346.11 Aligned_cols=156 Identities=28% Similarity=0.412 Sum_probs=144.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc--cchHh
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQT--EGEEK 236 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~--e~~~~ 236 (347)
...+.+++..|++++.+++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.++.... ...+.
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~ 94 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPAVKN 94 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHHHH
Confidence 3567778888999999999999999999999999999999999999999999999999999999999875321 22467
Q ss_pred hhhHHHHHHHHHHHHHHhCCCeeecC-CCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecCC
Q 019043 237 INNSYQSIYKQLVEILGSLGVVPVET-VGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGP 314 (347)
Q Consensus 237 l~eg~~~I~kqL~~iL~k~GVe~I~~-vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P 314 (347)
+.+||+||+++|.++|+++||+.|++ +|++|||++||||+++++++.++|+|++|+|+||+|||||||||||+|++++
T Consensus 95 i~~Gvemi~k~~~~~L~k~GV~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~~ 173 (208)
T PRK14155 95 FIIGVEMTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAVAAKG 173 (208)
T ss_pred HHHHHHHHHHHHHHHHHHCCCceecCCCCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeEeCCEeeccceEEECCCC
Confidence 99999999999999999999999998 8999999999999999999999999999999999999999999999999963
No 3
>PRK14161 heat shock protein GrpE; Provisional
Probab=100.00 E-value=6.5e-46 Score=335.28 Aligned_cols=158 Identities=27% Similarity=0.395 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccc-hH
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEG-EE 235 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~-~~ 235 (347)
+-...+++++..|++++++++++|+|++|||+|||||++||++++++||.++|+++||||+|||+||+.+.....+. ..
T Consensus 19 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~ 98 (178)
T PRK14161 19 EIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPANSDVEVT 98 (178)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccccchhHH
Confidence 34455667788899999999999999999999999999999999999999999999999999999999886543221 25
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCeeecC-CCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecCC
Q 019043 236 KINNSYQSIYKQLVEILGSLGVVPVET-VGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGP 314 (347)
Q Consensus 236 ~l~eg~~~I~kqL~~iL~k~GVe~I~~-vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P 314 (347)
.+.+|++||+++|.++|+++||+.|++ +|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|+++|
T Consensus 99 ~~~~Gv~mi~k~l~~vL~~~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~l~dRVLRpA~V~Vak~~ 178 (178)
T PRK14161 99 NIIAGVQMTKDELDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDRLLRPATVQVVKKP 178 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcEeCCEeecCceEEeCCCC
Confidence 789999999999999999999999998 7999999999999999999999999999999999999999999999999864
No 4
>PRK14151 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.4e-46 Score=335.86 Aligned_cols=154 Identities=30% Similarity=0.470 Sum_probs=144.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhh
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~ 238 (347)
...+++++..+++++.+++++|+|++|||+|||||++||++.+++|++++|+++||||+|||+||+++.....+..+++.
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~ 101 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKPMR 101 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999999999999987654333446899
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 239 eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
+||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|++
T Consensus 102 ~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~l~dRvLRpA~V~Vak 175 (176)
T PRK14151 102 EGVELTLKMFQDTLKRYQLEAVDPHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVVSK 175 (176)
T ss_pred HHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcEECCEEecCcEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
No 5
>PRK14148 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7.5e-46 Score=338.94 Aligned_cols=157 Identities=27% Similarity=0.413 Sum_probs=147.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE 235 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~ 235 (347)
+.+...+++++..|++++++++++|+|++|||+|||||++||++++++|+.++|+++||||+|||+||+.+.... ....
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~-~~~~ 117 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKL-EEAI 117 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-hhHH
Confidence 556777888999999999999999999999999999999999999999999999999999999999999876432 2346
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecC
Q 019043 236 KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAG 313 (347)
Q Consensus 236 ~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~ 313 (347)
.+.+||+||+++|.++|+++||+.|+++|++|||++|+||++++++++++|+|++|+|+||+|||||||||||+|++.
T Consensus 118 ~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vak~ 195 (195)
T PRK14148 118 AMKEGIELTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIVRAAKVVIVKN 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeeeccEEEeCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999873
No 6
>PRK14141 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.1e-45 Score=340.93 Aligned_cols=154 Identities=25% Similarity=0.456 Sum_probs=142.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhc-----ccchH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQ-----TEGEE 235 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e-----~e~~~ 235 (347)
.++++|..|++++.+++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||++++... .....
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~ 114 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLK 114 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccccccccchhHH
Confidence 4566778888999999999999999999999999999999999999999999999999999999986532 12246
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecCC
Q 019043 236 KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGP 314 (347)
Q Consensus 236 ~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P 314 (347)
.+.+||+||+++|.++|+++||+.|+++|++|||++||||+++++++.++|+|++|+|+||+|||||||||||+|++++
T Consensus 115 ~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vsk~~ 193 (209)
T PRK14141 115 ALIEGVEMTERAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVGVAKGG 193 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeecccEEEECCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999953
No 7
>PRK14153 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.1e-45 Score=337.45 Aligned_cols=157 Identities=32% Similarity=0.543 Sum_probs=146.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhh
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKI 237 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l 237 (347)
+...+..+|..+++++.+++++|+|++|||+|||||+++|++++++|++++|+++||||+|||+||+++.+. .+....+
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~-~~~~~~l 112 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESART-AEDMNSI 112 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-cchHHHH
Confidence 356677788889999999999999999999999999999999999999999999999999999999987643 2345789
Q ss_pred hhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecCCC
Q 019043 238 NNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPG 315 (347)
Q Consensus 238 ~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P~ 315 (347)
.+||+||+++|.++|+++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|+++|.
T Consensus 113 ~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~~~ 190 (194)
T PRK14153 113 VEGIEMVSKQFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRPAMVSVARNPD 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcEeCCEEeeCcEEEECCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998643
No 8
>PRK14163 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.8e-45 Score=340.13 Aligned_cols=145 Identities=27% Similarity=0.554 Sum_probs=138.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNS 240 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg 240 (347)
.|++++..+++++.+++++|+|++|||+|||||++||+++++.|++++|+++||||+|||+||+.+. .+..|
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~--------~l~~G 115 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHG--------ELVGG 115 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhch--------hHHHH
Confidence 4666788888999999999999999999999999999999999999999999999999999998762 47899
Q ss_pred HHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecC
Q 019043 241 YQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAG 313 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~ 313 (347)
|+||+++|.++|+++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|+++
T Consensus 116 v~mi~k~l~~~L~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRPA~V~Vsk~ 188 (214)
T PRK14163 116 FKSVAESLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPARVAVAEP 188 (214)
T ss_pred HHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcCcCCEeccCceEEECCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995
No 9
>PRK14147 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.3e-45 Score=331.67 Aligned_cols=151 Identities=29% Similarity=0.495 Sum_probs=141.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhh
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINN 239 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~e 239 (347)
..++.++..|++++++++++|+|++|||+|||||++||+++++.||.++|+++||||+|||+||+.+.. .....+.+
T Consensus 21 ~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~---~~~~~l~~ 97 (172)
T PRK14147 21 DPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAG---TEPSPLRD 97 (172)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccc---chHHHHHH
Confidence 346677888999999999999999999999999999999999999999999999999999999998653 22467899
Q ss_pred HHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecC
Q 019043 240 SYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAG 313 (347)
Q Consensus 240 g~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~ 313 (347)
|++||+++|.++|+++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|+++
T Consensus 98 Gv~mi~k~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~RvLRpA~V~Vak~ 171 (172)
T PRK14147 98 GLELTYKQLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRPALVVVAKQ 171 (172)
T ss_pred HHHHHHHHHHHHHHHCCCEEeCCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeccCceEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 10
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-45 Score=336.35 Aligned_cols=153 Identities=35% Similarity=0.574 Sum_probs=143.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSY 241 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~ 241 (347)
+.+++..|+.++++++++|+|++|||+|||||++++++.+++||+++|+.+||||+|||+||+.++...++..++|.+||
T Consensus 41 ~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~~~l~~Gv 120 (193)
T COG0576 41 EQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALLEGV 120 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999988765544345799999
Q ss_pred HHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecCC
Q 019043 242 QSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGP 314 (347)
Q Consensus 242 ~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P 314 (347)
+||+++|.++|.++||+.|++.|+.|||++|+||++++++++++|+|++|+|+||+|||||||||||+|++++
T Consensus 121 em~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRVLRpA~V~Vak~~ 193 (193)
T COG0576 121 EMTLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLRPAMVKVAKKE 193 (193)
T ss_pred HHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhheeeecCCCCCCCeEEEEeecCeeeCCEeccceEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864
No 11
>PRK14139 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.3e-45 Score=333.36 Aligned_cols=151 Identities=28% Similarity=0.403 Sum_probs=140.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhh
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~ 238 (347)
...++.++..|++++.+++++|+|++|||+|||||++||++++++|+.++|+++||||+|||+||+.+.. .....+.
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~---~~~~~l~ 110 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADES---GDLEKLR 110 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc---chHHHHH
Confidence 3456677888899999999999999999999999999999999999999999999999999999997642 3346789
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecC
Q 019043 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAG 313 (347)
Q Consensus 239 eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~ 313 (347)
+||+||+++|.++|+++||+.|+++|++|||++|+||+++++ +.++|+|++|+|+||+|||||||||||+|++.
T Consensus 111 ~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~-~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~ 184 (185)
T PRK14139 111 EGVELTLKQLTSAFEKGRVVEINPVGEKFDPHQHQAISMVPA-EQEPNTVVAVLQKGYTIADRVLRPALVTVAAP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHCCCceeCCCCCCCChHHhheeeeecC-CCCcCEEEEEeeCCcEeCCEeccCceEEeCCC
Confidence 999999999999999999999999999999999999999988 67899999999999999999999999999984
No 12
>PRK14145 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.8e-45 Score=333.68 Aligned_cols=156 Identities=37% Similarity=0.570 Sum_probs=145.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhccc
Q 019043 153 KSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTE 232 (347)
Q Consensus 153 ~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e 232 (347)
+....+...|+.++..+++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+. .
T Consensus 41 ~~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~----~ 116 (196)
T PRK14145 41 QQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASS----G 116 (196)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcc----c
Confidence 344556667888899999999999999999999999999999999999999999999999999999999999762 2
Q ss_pred chHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 233 GEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 233 ~~~~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
....+.+|++||+++|.++|+++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|++
T Consensus 117 ~~~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRPA~V~Vak 196 (196)
T PRK14145 117 DYNSLKEGIELIYRQFKKILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRPSLVKVAK 196 (196)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCchhhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeeccceEEeCC
Confidence 24578899999999999999999999999999999999999999999999999999999999999999999999999975
No 13
>PRK14150 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.4e-45 Score=334.33 Aligned_cols=155 Identities=30% Similarity=0.499 Sum_probs=139.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccch
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE 234 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~ 234 (347)
.+.++..|+.++..+++ +++++|+|++|||+|||||++||+++++.|++++|+++||||+|||+||+.+........
T Consensus 39 ~~~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~~~~~~ 115 (193)
T PRK14150 39 ADARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKENEAL 115 (193)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccccchhH
Confidence 34445556666665554 679999999999999999999999999999999999999999999999998754333334
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 235 EKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 235 ~~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
..+.+||+||+++|.++|+++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||+|+|++
T Consensus 116 ~~~~~Gv~mi~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~l~drvLRpA~V~Vsk 193 (193)
T PRK14150 116 KALIEGVELTLKSLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLLRPAMVMVSK 193 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeEeCCEEecceEEEeCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999975
No 14
>PRK14162 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.9e-45 Score=334.85 Aligned_cols=157 Identities=27% Similarity=0.465 Sum_probs=143.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccch
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE 234 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~ 234 (347)
...+...|+.++..|++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.. .++..
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~-~~~~~ 115 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKA-DDEAA 115 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc-cchhH
Confidence 34455567778888999999999999999999999999999999999999999999999999999999998754 22334
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCC-CCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 235 EKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDST-EFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 235 ~~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~-e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
..+.+||+||+++|.++|.++||+.|+++|++|||++|+||++++++ +.++|+|++|+|+||+|||||||||||+|++
T Consensus 116 ~~l~~Gvemi~k~l~~vL~~~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~Vak 194 (194)
T PRK14162 116 KQLKKGVQMTLDHLVKALKDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMVVVAQ 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCCEeeecceEEeCC
Confidence 67999999999999999999999999999999999999999999864 6889999999999999999999999999974
No 15
>PRK14160 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.7e-45 Score=334.92 Aligned_cols=158 Identities=39% Similarity=0.612 Sum_probs=145.6
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhh
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKV 229 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~ 229 (347)
..+..++++...|++++..|++++.+++++|+|++|||+|||||+.||++.++.||.++|+++||||+|||+||+.+..
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~~- 132 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVEG- 132 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc-
Confidence 3444566667778888899999999999999999999999999999999999999999999999999999999997632
Q ss_pred cccchHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEE
Q 019043 230 QTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVK 309 (347)
Q Consensus 230 e~e~~~~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~ 309 (347)
..+.+.+||+||+++|.++|+++||+.|++.| +|||++|+||+++++++.++|+|++|+|+||+|||||||||||+
T Consensus 133 ---~~~~l~~Gv~mi~kql~~vL~k~GVe~I~~~G-~FDP~~HEAv~~~~~~e~~~gtVveV~qkGY~l~dRVLRpA~V~ 208 (211)
T PRK14160 133 ---SVEDLKKGIEMTVKQFKTSLEKLGVEEISTEG-EFDPNLHNAVMHVEDENYGENEIVEVFQKGYKRGDKVIRYSMVK 208 (211)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeeecceEE
Confidence 23578999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred eec
Q 019043 310 VSA 312 (347)
Q Consensus 310 Vsk 312 (347)
|++
T Consensus 209 Va~ 211 (211)
T PRK14160 209 VAN 211 (211)
T ss_pred eCC
Confidence 974
No 16
>PRK14158 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7.8e-45 Score=332.00 Aligned_cols=153 Identities=33% Similarity=0.556 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhh
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKI 237 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l 237 (347)
+...|++++..+++++.+++++|+|++|||+|||||+++|++++++|++++|+++||||+|||+||+.+... +..+.+
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~--~~~~~i 118 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADE--ESMSAI 118 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCc--chHHHH
Confidence 445677788889999999999999999999999999999999999999999999999999999999987542 334679
Q ss_pred hhHHHHHHHHHHHHHHhCCCeeecC-CCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 238 NNSYQSIYKQLVEILGSLGVVPVET-VGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 238 ~eg~~~I~kqL~~iL~k~GVe~I~~-vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
.+||+||+++|.++|+++||+.|++ +|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|++
T Consensus 119 ~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~VsK 194 (194)
T PRK14158 119 IEGIRMTLSMLLSTLKKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNERLLRPAMVSVAT 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcEeCCEEeecceeEeCC
Confidence 9999999999999999999999997 89999999999999999999999999999999999999999999999985
No 17
>PRK14144 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.2e-45 Score=332.39 Aligned_cols=153 Identities=25% Similarity=0.421 Sum_probs=142.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhh
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~ 238 (347)
...+++++..+++++.+++++|+|++|||+|||||+++|+++++.||+++|+++||||+|||+||+.+.... ....+.
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~--~~~~i~ 124 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQLADKN--SDPSMH 124 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHccccc--chhHHH
Confidence 345667788899999999999999999999999999999999999999999999999999999999876432 235789
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecC
Q 019043 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAG 313 (347)
Q Consensus 239 eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~ 313 (347)
.||+||+++|.++|+++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|+++
T Consensus 125 ~Gv~mi~k~l~~~L~k~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vskk 199 (199)
T PRK14144 125 EGLELTMKLFLDALQKFDVEQIDPLGQTFDPQQHEAMSMQPAPGAPPNSVITVFQKGYKLSDRVIRPARVIVSTK 199 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEECCEEecccEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874
No 18
>PRK10325 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8.1e-45 Score=332.75 Aligned_cols=139 Identities=27% Similarity=0.455 Sum_probs=131.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHhC
Q 019043 176 ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSL 255 (347)
Q Consensus 176 lkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k~ 255 (347)
++++|+|++|||+|||||++||+++++.|++++|+++||||+|||+||+.+..........+.+||+||+++|.++|+++
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~~~~l~~Gv~m~~~~l~~~L~~~ 137 (197)
T PRK10325 58 ERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEGIELTLKSMLDVVRKF 137 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHC
Confidence 58999999999999999999999999999999999999999999999998764333345789999999999999999999
Q ss_pred CCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecCC
Q 019043 256 GVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGP 314 (347)
Q Consensus 256 GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P 314 (347)
||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|++++
T Consensus 138 Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk~~ 196 (197)
T PRK10325 138 GVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAK 196 (197)
T ss_pred cCeeeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeccCceEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999864
No 19
>PRK14140 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.1e-44 Score=330.22 Aligned_cols=154 Identities=36% Similarity=0.583 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhh
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKI 237 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l 237 (347)
++++++.++..+++++++++++|+|++|||+|||||++||+..+++|++++|+++||||+|||+||+++... ....+++
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~-~~~~~~i 116 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEAD-DEQTKSL 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cchHHHH
Confidence 344566778888899999999999999999999999999999999999999999999999999999987532 2334788
Q ss_pred hhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 238 NNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 238 ~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
.+||+||+++|.++|+++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||+|+|++
T Consensus 117 ~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vak 191 (191)
T PRK14140 117 LKGVEMVHRQLLEALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIRPSMVKVNQ 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHCCCEeeCCCCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeEeCCEEecCcEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975
No 20
>PRK14146 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.8e-44 Score=334.20 Aligned_cols=155 Identities=25% Similarity=0.467 Sum_probs=143.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhh
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~ 238 (347)
...|+.++..+++++.+++++|+|++|||+|||||+.||++.++.|++++|+++||||+|||+||+.+.. .++....|.
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~-~~~~~~~l~ 134 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQN-QSEELKPFV 134 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc-ccchhhHHH
Confidence 4456677888899999999999999999999999999999999999999999999999999999998753 223346799
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCC----eeeecceEEeecCC
Q 019043 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGD----RLLRPSMVKVSAGP 314 (347)
Q Consensus 239 eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~d----RVLRPA~V~Vsk~P 314 (347)
+||+||+++|.++|+++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+||| ||||||||+|++++
T Consensus 135 ~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~r~~~RvLRpA~V~Vak~~ 214 (215)
T PRK14146 135 EGVKMILKEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYYKENEDKFTLRPARVRIGKPK 214 (215)
T ss_pred HHHHHHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeEeCCccCCeeccCceEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 69999999999843
No 21
>PRK14154 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.7e-44 Score=332.60 Aligned_cols=153 Identities=25% Similarity=0.448 Sum_probs=141.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhh
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~ 238 (347)
+..|+.+|+.+++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+........+++.
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~ 133 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMR 133 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999999999999987543323346899
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecC-CCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEee
Q 019043 239 NSYQSIYKQLVEILGSLGVVPVET-VGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 311 (347)
Q Consensus 239 eg~~~I~kqL~~iL~k~GVe~I~~-vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vs 311 (347)
+||+||+++|.++|+++||+.|++ +|++|||++|+||+++++++.++|+|++|+|+||+|+|||||||||+|+
T Consensus 134 eGvemi~k~l~~vL~k~GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~l~dRVLRPA~V~Va 207 (208)
T PRK14154 134 DGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVIVA 207 (208)
T ss_pred HHHHHHHHHHHHHHHHCCCEEecCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEEecceEEEeC
Confidence 999999999999999999999998 6999999999999999999999999999999999999999999999996
No 22
>PRK14159 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.8e-44 Score=324.04 Aligned_cols=147 Identities=31% Similarity=0.491 Sum_probs=137.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHH
Q 019043 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQS 243 (347)
Q Consensus 164 ~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~ 243 (347)
.++..+++++.+++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+... ......+.+|++|
T Consensus 30 ~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~-~~~~~~l~~Gv~m 108 (176)
T PRK14159 30 VEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECH-DEISLKIKEGVQN 108 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-cchHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999987542 2334578999999
Q ss_pred HHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 244 IYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 244 I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
|+++|.++|+++||+.|++.| +|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|++
T Consensus 109 i~k~l~~vL~k~Gv~~I~~~G-~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~Vak 176 (176)
T PRK14159 109 TLDLFLKKLEKHGVALIKEEK-EFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVSVAK 176 (176)
T ss_pred HHHHHHHHHHHCcCEecCCCC-CCChHHhhhhheeCCCCCCcCeEEEEeeCCcEeCCEeeecceeEeCC
Confidence 999999999999999999999 59999999999999999999999999999999999999999999985
No 23
>PRK14149 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.1e-43 Score=323.58 Aligned_cols=148 Identities=27% Similarity=0.466 Sum_probs=138.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHH
Q 019043 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQS 243 (347)
Q Consensus 164 ~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~ 243 (347)
++++.|++++.+++++|+|++|||+|||||++||++++++|+.++|+++||||+|||+||+.+... +.....+.+||+|
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~-~~~~~~l~~Gv~m 121 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAE-VDKESALTKGLEL 121 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-ccchHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999999999999999987653 2334679999999
Q ss_pred HHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecC
Q 019043 244 IYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAG 313 (347)
Q Consensus 244 I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~ 313 (347)
|+++|.++|+++||+.|++.|. |||++|+||+++++++.++|+|++|+|+||+|||||||||||+|+++
T Consensus 122 i~k~l~~vL~k~GV~~I~~~G~-FDP~~HEAv~~v~~~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Vak~ 190 (191)
T PRK14149 122 TMEKLHEVLARHGIEGIECLEE-FDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAKN 190 (191)
T ss_pred HHHHHHHHHHHCCCEEeCCCCC-CChHHhheeeeecCCCCCcCEEEEEeeCCcEeCCEEeeccEEEeCCC
Confidence 9999999999999999999995 99999999999999999999999999999999999999999999984
No 24
>PRK14157 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.7e-43 Score=329.17 Aligned_cols=145 Identities=23% Similarity=0.432 Sum_probs=136.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNS 240 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg 240 (347)
.+..+|..|++++.+++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.. +.++
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~~~--------~~~~ 152 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREHSE--------MDDS 152 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc--------cchH
Confidence 35667888889999999999999999999999999999999999999999999999999999997642 3568
Q ss_pred HHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecC
Q 019043 241 YQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAG 313 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~ 313 (347)
|+||+++|.++|+++||+.|+++|++|||++||||+++++++.++|+|++|+|+||+|||||||||||+|+++
T Consensus 153 ~~~i~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~l~dRVLRPA~V~Vak~ 225 (227)
T PRK14157 153 FKAVAAKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVVVASP 225 (227)
T ss_pred HHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCcCEEEEEeeCCceeCCEeccCceEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999983
No 25
>PRK14156 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.6e-42 Score=310.59 Aligned_cols=146 Identities=28% Similarity=0.400 Sum_probs=135.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNS 240 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg 240 (347)
.+..++..+++++.+++++|+|++|||+|||||+++|++++++||.++|+++||||+|||+||+.+.. ....+.+|
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~----~~~~l~~G 106 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEG----LTDDVKKG 106 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCcc----cchhHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999997643 12468899
Q ss_pred HHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecC-CCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 241 YQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDS-TEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es-~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
|+||+++|.++|+++||++|++. +|||++|+||+++++ +++++|+|++|+|+||+|||||||||||+|++
T Consensus 107 v~mi~k~l~~~L~~~GV~~i~~~--~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va~ 177 (177)
T PRK14156 107 LEMVQESLIQALKEEGVEEVAVD--SFDHNLHMAVQTLPADDEHPADSIAQVFQKGYKLHERLLRPAMVVVYN 177 (177)
T ss_pred HHHHHHHHHHHHHHCCCeecCCC--CCChhHhhcceeecCCCCCCcCEEEEEeeCCcEeCCEEeecceeEeCC
Confidence 99999999999999999999985 899999999999985 45899999999999999999999999999974
No 26
>PRK14142 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.9e-42 Score=319.86 Aligned_cols=144 Identities=31% Similarity=0.511 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHH
Q 019043 168 NLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQ 247 (347)
Q Consensus 168 ~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kq 247 (347)
.+.+++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.... ..++.||+++
T Consensus 44 ~~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLERAL~~~~~~-------~~~v~~I~kq 116 (223)
T PRK14142 44 HTEDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDLE-------SGPLKSVADK 116 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHhccccc-------cHHHHHHHHH
Confidence 344667788999999999999999999999999999999999999999999999999774321 1358899999
Q ss_pred HHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCC-CCceeEEeccccccCCeeeecceEEeecCCCCCC
Q 019043 248 LVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFD-EGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAK 318 (347)
Q Consensus 248 L~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e-~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P~~~~ 318 (347)
|.++|+++||+.|+++|++|||++||||+++++++.. .|+|++|+|+||+|||||||||||+|++.|....
T Consensus 117 L~~iLek~GVe~I~~~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk~~~~~~ 188 (223)
T PRK14142 117 LDSALTGLGLVAFGAEGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVDTVVVDA 188 (223)
T ss_pred HHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCCEeccCceEEECCCCCCCc
Confidence 9999999999999999999999999999999987754 5799999999999999999999999999876433
No 27
>PRK14164 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.3e-41 Score=309.79 Aligned_cols=139 Identities=30% Similarity=0.573 Sum_probs=127.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhH-HH
Q 019043 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNS-YQ 242 (347)
Q Consensus 164 ~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg-~~ 242 (347)
.++..|++++.+++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+++... ..| ++
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~--------~~g~l~ 148 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDLAEQHGDL--------NEGPLK 148 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--------cccHHH
Confidence 456677788899999999999999999999999999999999999999999999999999976431 233 88
Q ss_pred HHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 243 SIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 243 ~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
||+++|.++|+++||+.|+++|++|||++||||+++++++ .++|++|+|+||+|||||||||||+|++
T Consensus 149 ~i~~~l~~vL~k~Gve~I~~~Ge~FDP~~HEAV~~~~~~~--~~~V~~V~qkGY~l~dRVLRPA~V~Vak 216 (218)
T PRK14164 149 AFSDKLTNVLAGLKVEKFGEEGDAFDPEIHEAVQDLSSGD--EKVLGTVLRKGYRMGDRVLRTAMVIIAD 216 (218)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeecCCC--CCEeeEEeeCCcEECCEeccCceEEeCC
Confidence 9999999999999999999999999999999999998764 5899999999999999999999999987
No 28
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=100.00 E-value=6.5e-39 Score=276.96 Aligned_cols=136 Identities=42% Similarity=0.673 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHH
Q 019043 174 SAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILG 253 (347)
Q Consensus 174 ~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~ 253 (347)
++++++|+|++|||+|||||+.+++++++.++.++++++|||++|+|++|+++.... +..+.+.+||+||+++|.++|.
T Consensus 2 ~~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~le~a~~~~~~~-~~~~~~~~g~~~i~~~l~~~L~ 80 (137)
T cd00446 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKKE-EELKNLVEGVEMTLKQLLDVLE 80 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999886533 3456899999999999999999
Q ss_pred hCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEe
Q 019043 254 SLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKV 310 (347)
Q Consensus 254 k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~V 310 (347)
++||+.|++.|++|||++|+||+++++++.++|+|++|+|+||++||||||||+|+|
T Consensus 81 ~~Gv~~i~~~g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V 137 (137)
T cd00446 81 KHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRVLRPAMVVV 137 (137)
T ss_pred HCCCEEECCCCCCCCHHHheeeeeecCCCCCcCEEEEEeecCeEECCEEecccEeEC
Confidence 999999999999999999999999999999999999999999999999999999997
No 29
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=100.00 E-value=2.4e-39 Score=284.87 Aligned_cols=156 Identities=41% Similarity=0.644 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE 235 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~ 235 (347)
..+...++.++..++++++++++++.|+.|+|+||++|+.+++.+++.++.++|+++||+++|+|++|+.++. ......
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~-~~~~~~ 88 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAK-SNEEEE 88 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-S-HHCTCH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccchHH
Confidence 3444556667777888999999999999999999999999999999999999999999999999999998864 223446
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 236 KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 236 ~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
.+.+||.|++++|.++|.++||+.|+++|++|||++|+||+++++++.++|+|++|+++||++||||||||+|+|+|
T Consensus 89 ~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V~K 165 (165)
T PF01025_consen 89 SLLEGLEMILKQLEDILEKNGVEEIEPVGEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGYRLGGRVLRPAEVVVSK 165 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTEEEE--TSSB--TTTEEEEEEECSSSS-CTBEEEECC-EEEETTEEEE-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEecCCCCCCCCHHHheeheecCcCCCCcCeEEEEEecCEEECCEEeeeeEEEecC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999986
No 30
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-38 Score=290.26 Aligned_cols=156 Identities=27% Similarity=0.394 Sum_probs=140.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc------cc
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQT------EG 233 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~------e~ 233 (347)
..|++.+.. +++..+++|+|+|..||++|+|+|+.|..++++.||+++|+++||.|.|+|++|.++++.+. ..
T Consensus 74 ~~l~~~~k~-~~e~~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~~~~d~~~~ 152 (236)
T KOG3003|consen 74 ALLEKVLKL-EKEEQELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEESEKEDQKKD 152 (236)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcccccchH
Confidence 334433333 34448999999999999999999999999999999999999999999999999999997652 22
Q ss_pred hHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecC
Q 019043 234 EEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAG 313 (347)
Q Consensus 234 ~~~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~ 313 (347)
-+.+.+|+.|+++||.++|.+||++.++|+|++||||.||||+++++..+++|||..|.+.||+||||+||||||.|+++
T Consensus 153 L~~l~eGl~mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k~Gy~L~~R~IRPA~VgV~~~ 232 (236)
T KOG3003|consen 153 LKDLFEGLSMTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTKKGYKLNGRVIRPAMVGVVKG 232 (236)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEeccCcccCCeeechhheeeecC
Confidence 35678899999999999999999999999999999999999999998889999999999999999999999999999998
Q ss_pred CCC
Q 019043 314 PGP 316 (347)
Q Consensus 314 P~~ 316 (347)
+++
T Consensus 233 ~~~ 235 (236)
T KOG3003|consen 233 GEN 235 (236)
T ss_pred CCC
Confidence 764
No 31
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.6 Score=44.74 Aligned_cols=89 Identities=21% Similarity=0.177 Sum_probs=62.8
Q ss_pred cCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019043 138 ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVL 217 (347)
Q Consensus 138 ~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVl 217 (347)
.....++++++++.++..+++ .+|..++.-.-++..-++++..|...|+.+|..+.-..-.......++....-+.+..
T Consensus 66 l~~~~ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~ 144 (236)
T KOG3003|consen 66 LGPSLAEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEES 144 (236)
T ss_pred cCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 445566777777777766666 7888888666677888999999999999999988876655555566666666666655
Q ss_pred hhHHHHHhhhh
Q 019043 218 DNFERAKTQIK 228 (347)
Q Consensus 218 DnLErAl~~~~ 228 (347)
+++..-..++
T Consensus 145 -~~~d~~~~L~ 154 (236)
T KOG3003|consen 145 -EKEDQKKDLK 154 (236)
T ss_pred -cccccchHHH
Confidence 4444433443
No 32
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.08 E-value=4.1 Score=39.24 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVL 217 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVl 217 (347)
..+...+...+..++.++..+...+..++.++++++.++.++..+...+|+|..+-...+..--.++-+.+|-.=+
T Consensus 23 ~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~ 98 (239)
T COG1579 23 EPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEI 98 (239)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3455677888888999999999999999999999999999999999999999877665553222333344444333
No 33
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.29 E-value=6.4 Score=42.59 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=74.0
Q ss_pred CchhHHHHHHHHHHHhc-CCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 122 PTSFIMETLQSYKEALA-SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 122 ~~~~~~~~l~~~~ea~~-~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
..-++.++|...++.-. .....+.....-++....+++.++...++.|+.++++|+..+.++.++.++++.++.+=+.+
T Consensus 386 rG~~l~eal~~~~e~~~p~e~~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 386 RGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred cCCcHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666665555544 11111211112223334444444445555555555555555555555555555444333322
Q ss_pred HHHHH-HHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHhCCCeeecCCC---CCCCccccceee
Q 019043 201 LVTNA-QGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVG---NPFDPLLHEAIM 276 (347)
Q Consensus 201 ~~~~A-~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k~GVe~I~~vG---e~FDP~lHEAV~ 276 (347)
..... ...=+..+-.-++.|++.+..-. .-+.++.+.|..+.+-++++.-+ .| +...-.-|++|.
T Consensus 466 ~~~~~~~~rei~~~~~~I~~L~~~L~e~~----------~~ve~L~~~l~~l~k~~~lE~sG-~g~pvk~ve~~t~~~Ie 534 (652)
T COG2433 466 VRDKVRKDREIRARDRRIERLEKELEEKK----------KRVEELERKLAELRKMRKLELSG-KGTPVKVVEKLTLEAIE 534 (652)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhcC-CCcceehhhhhhHHHHH
Confidence 22111 12223445555666666654311 12334444444443333322111 11 123333567776
Q ss_pred eecC-CCCCCCceeEEecccc
Q 019043 277 REDS-TEFDEGVIIEEFRKGF 296 (347)
Q Consensus 277 ~~es-~e~e~gtVveV~qkGY 296 (347)
..+. -....|.|+-|..+|=
T Consensus 535 ~~e~~~gik~GDvi~v~~~sG 555 (652)
T COG2433 535 EAEEEYGIKEGDVILVEDPSG 555 (652)
T ss_pred hHHHhhccccCcEEEEEcCCC
Confidence 6543 3567788888887763
No 34
>PTZ00464 SNF-7-like protein; Provisional
Probab=89.88 E-value=7 Score=36.89 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=4.3
Q ss_pred CchhHHHHH
Q 019043 122 PTSFIMETL 130 (347)
Q Consensus 122 ~~~~~~~~l 130 (347)
|++.+.+++
T Consensus 12 p~~t~~d~~ 20 (211)
T PTZ00464 12 PKPTLEDAS 20 (211)
T ss_pred CCCCHHHHH
Confidence 344455555
No 35
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.83 E-value=16 Score=39.43 Aligned_cols=8 Identities=0% Similarity=0.268 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 019043 247 QLVEILGS 254 (347)
Q Consensus 247 qL~~iL~k 254 (347)
.|..++.+
T Consensus 514 ~f~~l~~k 521 (650)
T TIGR03185 514 SFKKLMRK 521 (650)
T ss_pred HHHHHhcc
Confidence 33334433
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.70 E-value=6 Score=45.22 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=30.5
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCeeecCCCC---CCCccccceeeee
Q 019043 235 EKINNSYQSIYKQLVEILGSLGVVPVETVGN---PFDPLLHEAIMRE 278 (347)
Q Consensus 235 ~~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe---~FDP~lHEAV~~~ 278 (347)
..|...+-.++..+..--..+.-.+++|+|. .-||.||-||...
T Consensus 471 s~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~ 517 (1074)
T KOG0250|consen 471 SAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERC 517 (1074)
T ss_pred hhcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHH
Confidence 3454445555666655555556778899998 6799999988865
No 37
>PRK11637 AmiB activator; Provisional
Probab=89.63 E-value=5.4 Score=40.64 Aligned_cols=60 Identities=7% Similarity=0.066 Sum_probs=31.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~ 203 (347)
.+..++.+|..++.++..++.+|..++.++..++.++..++++++..++.+.+-...+..
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555444444443
No 38
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.35 E-value=12 Score=36.02 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhCCCeeec
Q 019043 244 IYKQLVEILGSLGVVPVE 261 (347)
Q Consensus 244 I~kqL~~iL~k~GVe~I~ 261 (347)
.|..+...-+..||.+|.
T Consensus 179 ~yeri~~~~kg~gvvpl~ 196 (239)
T COG1579 179 EYERIRKNKKGVGVVPLE 196 (239)
T ss_pred HHHHHHhcCCCceEEeec
Confidence 344444444445555554
No 39
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=89.11 E-value=1.5 Score=37.21 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=34.0
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e 199 (347)
.+..++..+..|-.++..|+.++.++-+...+++-|-+++|+|+.+...
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555555566666666666666667777788999999999877544
No 40
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.77 E-value=14 Score=36.28 Aligned_cols=54 Identities=13% Similarity=0.370 Sum_probs=30.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
....++++|.++..++.++..++.++++++.+.+..+.+++.+++-.+.|+...
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555556666666666666666666665555554433
No 41
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=88.60 E-value=6 Score=34.30 Aligned_cols=38 Identities=3% Similarity=0.204 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019043 176 ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERL 213 (347)
Q Consensus 176 lkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dL 213 (347)
....+.+...++..+.+...++...........+...+
T Consensus 81 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i 118 (158)
T PF03938_consen 81 RQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKI 118 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444444444333
No 42
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.48 E-value=12 Score=34.53 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhh
Q 019043 171 EELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIK 228 (347)
Q Consensus 171 ~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~ 228 (347)
+++.+++.++..+++++++|++--- +.-+..+..+..+...+--+.||+.....++.
T Consensus 110 ~~l~~l~~~~~~l~~el~~~~~~Dp-~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKYSENDP-EKIEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4445555555555666665554322 22222333444455555566666666555543
No 43
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=87.87 E-value=4.4 Score=30.89 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=45.0
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+|+.+|..++..+..++..|...+..+..++...|+.-.|+..-++|.-..+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 5888999999999999999999999999999999999999988888875543
No 44
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=87.34 E-value=10 Score=35.26 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhhhHHHHH-------HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019043 145 AAEIEALLKSFEDEKIDL-------ERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVL 217 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L-------~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVl 217 (347)
...++..|.....++.+| .+++..++.++.++..+...+..+|+++.+++.+|.......-+..|-..|...+
T Consensus 117 ~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~ 196 (216)
T cd07627 117 WQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYL 196 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555 3678889999999999999999999999999999988887766666655555444
Q ss_pred h
Q 019043 218 D 218 (347)
Q Consensus 218 D 218 (347)
+
T Consensus 197 e 197 (216)
T cd07627 197 E 197 (216)
T ss_pred H
Confidence 3
No 45
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.27 E-value=2 Score=40.76 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
..++.+++..+.+.+.++.+...++++.+.+++.|.|+..|.++++.+.+
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33444455555555555666666777777777777777777777766654
No 46
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.48 E-value=8.3 Score=35.56 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=36.7
Q ss_pred HHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 134 KEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 134 ~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
..|+..|++.-..+.=.....++.+...++..+..+...+..++..+..+...+..++.+
T Consensus 75 ~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 75 ELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667776655555555556666666666666666666666666666666666655544
No 47
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=86.23 E-value=3.7 Score=31.19 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
++.+||+++..++..++.++.++..+.+.++.+++.+.++..=+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777666655544433
No 48
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.00 E-value=12 Score=29.59 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=22.1
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
+..++.++.+|+++...|..+...++....+++.+-.++..|+.
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555555555555555543
No 49
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=85.86 E-value=36 Score=33.55 Aligned_cols=92 Identities=23% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc---cchHhhhhHH
Q 019043 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQT---EGEEKINNSY 241 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~---e~~~~l~eg~ 241 (347)
+|..|+.|+.......+-.-|++.||+|+.-||-..++-.|+..+.+.++=+...=.+.+..++... ........|+
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~gk~Ll~lldd~pv~PG~~r~~Y~g~ 245 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEYGKRLLELLDDTPVVPGDTRPPYDGY 245 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------TTS-------H
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCh
Confidence 3445555555555555556677899999999998888877776666655544433333333222110 1112233444
Q ss_pred H---HHHHHHHHHHHhCC
Q 019043 242 Q---SIYKQLVEILGSLG 256 (347)
Q Consensus 242 ~---~I~kqL~~iL~k~G 256 (347)
. .|.....+.|..|-
T Consensus 246 ~~t~qIl~dAe~~L~~w~ 263 (271)
T PF13805_consen 246 EQTRQILNDAERALRSWQ 263 (271)
T ss_dssp HHHHHHHHHHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHhCc
Confidence 3 35666666777664
No 50
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.27 E-value=6.7 Score=38.39 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=38.6
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~ 201 (347)
-+.++.++......++.++..|..++.++..++.+.++++-+..+++.-+.+.+..=.+++
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666666666666666665554444443
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.16 E-value=13 Score=39.81 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=55.9
Q ss_pred HHHHHHHHHHH--hcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 126 IMETLQSYKEA--LASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (347)
Q Consensus 126 ~~~~l~~~~ea--~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e 199 (347)
+.++...|.++ ...+...++.+....+..++.+.+-++..+..++.++..++....|+..++.-+|+.+.+|..
T Consensus 122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl 197 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL 197 (546)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44555555555 456666677777777777888888888888888888888888888888888888888777763
No 52
>PRK14143 heat shock protein GrpE; Provisional
Probab=84.57 E-value=31 Score=33.26 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
..+.+++.++..++.++.+++.++.-+.++. .+...|...|.+++++.....+
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~Adf---eN~RKR~~kE~e~~~~~a~~~~ 119 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADF---DNFRKRTSREQEDLRLQLKCNT 119 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666665555444 4444555556666665554433
No 53
>PRK14163 heat shock protein GrpE; Provisional
Probab=84.03 E-value=27 Score=33.20 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=35.3
Q ss_pred hcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 137 LASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 137 ~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
+.........+++.++..+++++.++..++.-+.++.+-+ ..|...|.+++++.....+
T Consensus 34 ~~~~~~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~---rkR~~kE~e~~~~~a~~~~ 92 (214)
T PRK14163 34 APAGDAAATAGLTAQLDQVRTALGERTADLQRLQAEYQNY---RRRVERDRVTVKEIAVANL 92 (214)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3333444455666777777777777777776666554444 5555666666665554443
No 54
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=83.89 E-value=15 Score=36.67 Aligned_cols=39 Identities=8% Similarity=0.234 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
+...+.++.+-|.+.+..+++++.++..+...+.+|.+.
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777777777777777644
No 55
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.47 E-value=12 Score=36.95 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=42.3
Q ss_pred HHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019043 132 SYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVME 211 (347)
Q Consensus 132 ~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~ 211 (347)
.+++.+...---||.+||.++..+.+|...-+=+|..|+ |-++..|+..+.++.+.. ++..=.-
T Consensus 7 EWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlE--------------AaLqKQKqK~e~ek~e~s--~LkREnq 70 (307)
T PF10481_consen 7 EWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLE--------------AALQKQKQKVEEEKNEYS--ALKRENQ 70 (307)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHHHHHHHHHHhhhhh--hhhhhhh
Confidence 344444433344666666665555554443333444444 444444444444433322 2233344
Q ss_pred HHhhhhhhHHHHHhhhh
Q 019043 212 RLLQVLDNFERAKTQIK 228 (347)
Q Consensus 212 dLLpVlDnLErAl~~~~ 228 (347)
.|++.+|+|++..+-+.
T Consensus 71 ~l~e~c~~lek~rqKls 87 (307)
T PF10481_consen 71 SLMESCENLEKTRQKLS 87 (307)
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 68888899998876654
No 56
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.41 E-value=8.1 Score=33.09 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
..+..++..+..+-.++..|+..+.++-+...+++-|-+++|+|+.+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666677777777777777888899999999999864
No 57
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.12 E-value=34 Score=39.42 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=49.6
Q ss_pred CCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHH------HHHHHHH
Q 019043 139 SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF-------RKRTEKER------LSLVTNA 205 (347)
Q Consensus 139 ~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~-------RKRtekE~------e~~~~~A 205 (347)
+.-.....+++.+++.++.++.+++..+..|.+++.+++.++....-+..+. +|+.+... ..-+.+.
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dk 469 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDK 469 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3344556666666666666666666666677777666666666665555444 22221111 1112333
Q ss_pred HHHHHHHHhhhhhhHHHHHhh
Q 019043 206 QGEVMERLLQVLDNFERAKTQ 226 (347)
Q Consensus 206 ~e~ll~dLLpVlDnLErAl~~ 226 (347)
+..|=..+..+++.++|....
T Consensus 470 vs~FG~~m~~lL~~I~r~~~~ 490 (1074)
T KOG0250|consen 470 VSAFGPNMPQLLRAIERRKRR 490 (1074)
T ss_pred hhhcchhhHHHHHHHHHHHhc
Confidence 445556667777777776555
No 58
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.79 E-value=17 Score=33.18 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=34.6
Q ss_pred CCchhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 121 APTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 121 ~~~~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
-+...|...|+.|+.... ....+..+...++.+..+|++++..|++++..++.++.-..-|++-+-..+
T Consensus 80 ltl~~vI~fLq~l~~~~~-----~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 80 LTLQDVISFLQNLKTTNP-----SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred CCHHHHHHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666663322 233344444455555555555555555555555555544444444444333
No 59
>PRK11637 AmiB activator; Provisional
Probab=81.67 E-value=12 Score=38.09 Aligned_cols=44 Identities=7% Similarity=0.097 Sum_probs=18.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
++..++.++..++.++..++.+|..+++++.+++.++...+..+
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444333333
No 60
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.31 E-value=19 Score=37.46 Aligned_cols=50 Identities=22% Similarity=0.487 Sum_probs=27.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
.+++.+..+....++..+|+.+|..++.++..+..++.+...+..+++++
T Consensus 46 ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 46 EIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 44444555555555555555555555555555555555555555554444
No 61
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=81.27 E-value=36 Score=31.76 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=27.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHH--HHHHHHHHHHHhHHHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEEL--SAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el--~elkdk~lRl~ADfEN~RKRtek 196 (347)
.+++++++++.....++.+|..|..-+ .++++.+..+..+.-|||+|+..
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444332 35666666667777777777654
No 62
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=81.24 E-value=25 Score=33.65 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=50.4
Q ss_pred HHHHhhhhhHHHHH-----HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019043 149 EALLKSFEDEKIDL-----ERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVL 217 (347)
Q Consensus 149 E~~l~~~e~E~~~L-----~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVl 217 (347)
+..|...+....+| ..++..++.++.+++.+...+..+|+++.+++.+|.......-+..|-..|...+
T Consensus 139 ~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fl 212 (234)
T cd07664 139 QVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYL 212 (234)
T ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 2477888899999999999999999999999999998887666666555554444
No 63
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=81.19 E-value=4.3 Score=42.66 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
..++++.+..+.++++++..|++++..+.++.++++.++..+.+++..++.++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444555555555555555555555554
No 64
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.07 E-value=60 Score=37.82 Aligned_cols=80 Identities=16% Similarity=0.317 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 125 ~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
.+...|.....++. ....+..++|+.+.....++..+..++..+..+++..+.++.+++.+.++.+.+..+.+...+..
T Consensus 604 ~L~~~l~~~~~~l~-~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 682 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQ-SAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ 682 (1201)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666664 33566788899999999999999999988888888888888888888888888777666555444
Q ss_pred H
Q 019043 205 A 205 (347)
Q Consensus 205 A 205 (347)
.
T Consensus 683 ~ 683 (1201)
T PF12128_consen 683 I 683 (1201)
T ss_pred H
Confidence 3
No 65
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=80.98 E-value=21 Score=36.92 Aligned_cols=130 Identities=19% Similarity=0.284 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHhhhhhcccc
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERL---LQVLDNFERAKTQIKVQTEG 233 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dL---LpVlDnLErAl~~~~~e~e~ 233 (347)
++..+|+.++..++++...-|++|...++++..|.-++...+++..+.-++.=-..| ..|+=++.+-+.-..
T Consensus 177 eq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v~~hldl~~----- 251 (472)
T KOG2856|consen 177 EQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKVQRHLDLSR----- 251 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----
Confidence 466788899999999999999999999999999888877766665554433222222 223333333322111
Q ss_pred hHhhhhHHHHHHHHHHH-------------HHHhCCCeee-c-CCCCCCCccccceee-eecCCCCCCCcee-EEeccc
Q 019043 234 EEKINNSYQSIYKQLVE-------------ILGSLGVVPV-E-TVGNPFDPLLHEAIM-REDSTEFDEGVII-EEFRKG 295 (347)
Q Consensus 234 ~~~l~eg~~~I~kqL~~-------------iL~k~GVe~I-~-~vGe~FDP~lHEAV~-~~es~e~e~gtVv-eV~qkG 295 (347)
+.+|..||.+|.. +-..+|+-.. + |-=..+.|.+.--|. ...+....+|.++ .|.+.|
T Consensus 252 ----~~~~~~ly~eleqsIr~Ad~eeDLrww~s~hG~~mamnWPqF~E~s~d~~rtia~r~ks~k~~~gv~lT~In~t~ 326 (472)
T KOG2856|consen 252 ----NSSYSGLYRELEQSIRAADAEEDLRWWRSNHGPGMAMNWPQFEEWSPDLQRTIAKREKSTKAADGVTLTRINQTG 326 (472)
T ss_pred ----hcchHHHHHHHHHHHhccchHHHHHHHHhcCCCccccCCchHhhcChhhhhHHHhccCCCCCCCCceeeeeccCC
Confidence 2344555555444 3345676553 2 333457788833333 4444444455443 455655
No 66
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=80.85 E-value=4.6 Score=34.69 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=51.3
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG---EVMERLLQVLDNFERAK 224 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e---~ll~dLLpVlDnLErAl 224 (347)
.++..++..+..+-.++..+++.+.++-+..-.++-|.+++|+|+... .+.+.+.. .-+....+..|||.+..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~--~~e~~~~~k~~~~~~~~~~~~dnL~~lY 83 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEP--TLEKTAVKKEKPAVKKKGEGYDNLARLY 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCc--cccchhhhcccccccccCCCchhHHHHH
Confidence 455667777778888888888888888888899999999999998651 11111111 23344667777777754
No 67
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=80.68 E-value=16 Score=35.32 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
..+++.++.++.++..++.+++-+++++++..+.|+.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk 173 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLK 173 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555566666666666666655543
No 68
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=79.85 E-value=53 Score=30.73 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=43.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019043 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVL 217 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVl 217 (347)
++..++.++.++..+..++..+|+++.+++.+|+......-+..|=..|...+
T Consensus 150 K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~l 202 (224)
T cd07623 150 KLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYL 202 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999998887666655555544443
No 69
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.43 E-value=21 Score=39.75 Aligned_cols=8 Identities=25% Similarity=0.592 Sum_probs=5.2
Q ss_pred CCceeEEe
Q 019043 285 EGVIIEEF 292 (347)
Q Consensus 285 ~gtVveV~ 292 (347)
.|+|+.+-
T Consensus 639 ~g~v~~i~ 646 (771)
T TIGR01069 639 KGKIVQIL 646 (771)
T ss_pred eEEEEEEc
Confidence 56777765
No 70
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.71 E-value=28 Score=38.83 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=6.8
Q ss_pred CCCceeEEecc
Q 019043 284 DEGVIIEEFRK 294 (347)
Q Consensus 284 e~gtVveV~qk 294 (347)
..|+|+.+-.+
T Consensus 650 ~~g~v~~i~~~ 660 (782)
T PRK00409 650 QKGEVLSIPDD 660 (782)
T ss_pred ceEEEEEEcCC
Confidence 35777777543
No 71
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.63 E-value=61 Score=30.70 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=20.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
.+.+..+.++...|..++..+.++++.++.+..++..-.++.++
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~ 84 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQ 84 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444444444444443333
No 72
>PRK09039 hypothetical protein; Validated
Probab=78.50 E-value=35 Score=34.31 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 154 ~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
.+..++..|+.++..++.+|...+.+..-.++.++.++++++
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 73
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.44 E-value=25 Score=30.61 Aligned_cols=80 Identities=13% Similarity=0.257 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHHHhcCC--ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 123 TSFIMETLQSYKEALASN--DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 123 ~~~~~~~l~~~~ea~~~~--~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
-..|-.+|..+....... -..++..+...+..++.....|+.+++.++.++...+.+...+...+.+.......++++
T Consensus 37 in~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee 116 (151)
T PF11559_consen 37 INCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE 116 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556776666555422 234556666666666667777777777777777777777777777777777666666655
Q ss_pred HH
Q 019043 201 LV 202 (347)
Q Consensus 201 ~~ 202 (347)
+.
T Consensus 117 ~~ 118 (151)
T PF11559_consen 117 LQ 118 (151)
T ss_pred HH
Confidence 43
No 74
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.29 E-value=47 Score=35.93 Aligned_cols=104 Identities=14% Similarity=0.243 Sum_probs=43.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHh
Q 019043 165 KVVNLSEELSAERARILRISADFDNFRKRTEKER--------LSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEK 236 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~--------e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~ 236 (347)
+++.++.++.+-.+...+++++.+.+++.+++.. .+.-......-+..+=+-+|.|..-+...+.+ .+.
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~---~~~ 371 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLE---IED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHH
Confidence 3444444444444444444444444444433221 11122223333444444455554444332211 122
Q ss_pred hhhHHHHHHHHHHHHHHhCCCe-eecCCCCCCCccc
Q 019043 237 INNSYQSIYKQLVEILGSLGVV-PVETVGNPFDPLL 271 (347)
Q Consensus 237 l~eg~~~I~kqL~~iL~k~GVe-~I~~vGe~FDP~l 271 (347)
..+.++..+-++.....+.++. ..+..|.+|+|+-
T Consensus 372 ~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~ 407 (581)
T KOG0995|consen 372 FFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPER 407 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCcc
Confidence 2333333444444555555555 3345665566643
No 75
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.92 E-value=72 Score=37.02 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=20.6
Q ss_pred eecCCCC--CCCccccceeeeecCCCCCCCceeEE
Q 019043 259 PVETVGN--PFDPLLHEAIMREDSTEFDEGVIIEE 291 (347)
Q Consensus 259 ~I~~vGe--~FDP~lHEAV~~~es~e~e~gtVveV 291 (347)
.++++|+ .+++.|+.||...-.. .-.+.||.-
T Consensus 517 v~G~v~~li~v~~~y~~Aie~alG~-~l~~vVV~~ 550 (1163)
T COG1196 517 VYGPVAELIKVKEKYETALEAALGN-RLQAVVVEN 550 (1163)
T ss_pred ccchHHHhcCcChHHHHHHHHHccc-ccCCeeeCC
Confidence 4556666 5888899999886443 334556553
No 76
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=77.78 E-value=18 Score=37.79 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=67.4
Q ss_pred CCCCccCCchhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHH------HHhHHHHHHHHHHHHHHHHhHH-
Q 019043 115 TSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERK------VVNLSEELSAERARILRISADF- 187 (347)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~------l~~L~~el~elkdk~lRl~ADf- 187 (347)
...+++-....|..+|+........+.+..++.|+.++..++.|+..++.= -..+.+.+.++-.-...+.+||
T Consensus 116 ~~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr 195 (478)
T PF11855_consen 116 RFVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARERARQILQLARELPADFR 195 (478)
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777788888888888888888999999999999999999887651 1334444445555555666777
Q ss_pred ---HHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhh
Q 019043 188 ---DNFRKRTEKERLSLV--TNAQGEVMERLLQVLDN 219 (347)
Q Consensus 188 ---EN~RKRtekE~e~~~--~~A~e~ll~dLLpVlDn 219 (347)
+|||.-...=++++. ......++..++.-.|.
T Consensus 196 ~V~~~~r~l~r~lr~~i~~~~~~~G~vL~~~~~~~d~ 232 (478)
T PF11855_consen 196 RVEDNFRELDRALRERIIDWDGSRGEVLDEYFDGYDA 232 (478)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhHHH
Confidence 344432222222222 23455666666555544
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.36 E-value=20 Score=33.67 Aligned_cols=7 Identities=29% Similarity=0.306 Sum_probs=3.7
Q ss_pred Ccccccc
Q 019043 94 GAVGIED 100 (347)
Q Consensus 94 ~~~~~~~ 100 (347)
|.+-|.+
T Consensus 66 ~w~~Vr~ 72 (206)
T PRK10884 66 NYAQIRD 72 (206)
T ss_pred CEEEEEe
Confidence 4555554
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.18 E-value=20 Score=35.45 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=23.2
Q ss_pred HHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHhCCCeeecCCCC
Q 019043 210 MERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGN 265 (347)
Q Consensus 210 l~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe 265 (347)
...++--+.++++.+...+.-+. .-+..+...+..+=..+|+..+...|.
T Consensus 253 k~~l~~eI~e~~~~~~~~r~~t~------~Ev~~Lk~~~~~Le~~~gw~~~~~~~~ 302 (325)
T PF08317_consen 253 KQELLAEIAEAEKIREECRGWTR------SEVKRLKAKVDALEKLTGWKIVSISGS 302 (325)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHHHCcEEEEEeCC
Confidence 34455555566666543321111 112233333333334457777776665
No 79
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.86 E-value=60 Score=32.22 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=16.9
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCe----eecCCCC
Q 019043 235 EKINNSYQSIYKQLVEILGSLGVV----PVETVGN 265 (347)
Q Consensus 235 ~~l~eg~~~I~kqL~~iL~k~GVe----~I~~vGe 265 (347)
..++.++-.+.--|..+.+++|+. .|-|.|.
T Consensus 169 ~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs 203 (314)
T PF04111_consen 169 NEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGS 203 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCC
Confidence 455566666666667777777776 3445554
No 80
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=76.72 E-value=94 Score=35.37 Aligned_cols=80 Identities=13% Similarity=0.190 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 125 ~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
.....-+.|++-.. --+....+.+.+|..++.....++.++..|++.+..+++.+....-+++|.+-|+.++...+...
T Consensus 82 vstqetriyRrdv~-llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 82 VSTQETRIYRRDVN-LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred hhHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 34455566776543 33456677788888888888888888888888888888999889999999999998887766554
Q ss_pred H
Q 019043 205 A 205 (347)
Q Consensus 205 A 205 (347)
+
T Consensus 161 ~ 161 (1265)
T KOG0976|consen 161 A 161 (1265)
T ss_pred h
Confidence 4
No 81
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=76.37 E-value=5.4 Score=32.40 Aligned_cols=36 Identities=14% Similarity=0.445 Sum_probs=25.5
Q ss_pred hhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHhCCC
Q 019043 215 QVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGV 257 (347)
Q Consensus 215 pVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k~GV 257 (347)
++.|.+..|+..+... +..+.++.+++.+.|.+.||
T Consensus 50 ~l~d~l~~av~~FE~~-------HP~l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 50 SLVDRLNEAVERFEAS-------HPKLAGILRNIMDSLANMGI 85 (85)
T ss_pred hHHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHCCC
Confidence 3455566666554322 34678899999999999997
No 82
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=75.89 E-value=43 Score=33.06 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=52.5
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhhhH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL--VTNAQGEVMERLLQVLDNF 220 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~--~~~A~e~ll~dLLpVlDnL 220 (347)
.-.++++.+|.+++....+|+.....|.-|...+|+++--..++|-..--.++.+..+. ++..+.+.|+.|=..-|+|
T Consensus 45 E~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34456677777777777777777777777777777777766666644444444333222 1223345566777777778
Q ss_pred HHHHhh
Q 019043 221 ERAKTQ 226 (347)
Q Consensus 221 ErAl~~ 226 (347)
+||..+
T Consensus 125 ErakRa 130 (333)
T KOG1853|consen 125 ERAKRA 130 (333)
T ss_pred HHhhhh
Confidence 877543
No 83
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.14 E-value=50 Score=32.90 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhCCCeeec--CCCC
Q 019043 241 YQSIYKQLVEILGSLGVVPVE--TVGN 265 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~GVe~I~--~vGe 265 (347)
++.-.++...++++|||..|. +.|+
T Consensus 159 Lre~L~~rdeli~khGlVlv~~~~ngd 185 (302)
T PF09738_consen 159 LREQLKQRDELIEKHGLVLVPDATNGD 185 (302)
T ss_pred HHHHHHHHHHHHHHCCeeeCCCCCCCc
Confidence 334457778889999999986 3454
No 84
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.13 E-value=36 Score=31.09 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
...+.+++.++..++.++..++.+|..+.+-+..++|.|.-++.+|.-...+.
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566666666666666666666666666666666665554443
No 85
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.95 E-value=60 Score=28.77 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=42.6
Q ss_pred HHHHHHHhhhhhHHHHHH-------HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLE-------RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGE 208 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~-------~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ 208 (347)
..++..+.....++..|+ .++..++.++.+++..+..+..+|+.+..++..|+......-...
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~d 189 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARD 189 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443 367777788888888888888888888888888877766554333
No 86
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=74.92 E-value=32 Score=30.82 Aligned_cols=53 Identities=9% Similarity=0.206 Sum_probs=23.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHH---HHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSE---ELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~---el~elkdk~lRl~ADfEN~RKRtek 196 (347)
++..++.++..++.++.+...+|..|+. -.++++.++..+++++.......+.
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443 3334444455555555533333333
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.72 E-value=1e+02 Score=32.06 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVV 167 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~ 167 (347)
..++..+...+..++.++..++..+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444
No 88
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.64 E-value=46 Score=33.05 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
...+.+++.++..++.|...+.+++..|+.+..++..++..+..+.+.+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777777777666666655554444444443
No 89
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=74.47 E-value=20 Score=34.79 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=45.4
Q ss_pred HHHHHHHHHhc-----CCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 128 ETLQSYKEALA-----SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 128 ~~l~~~~ea~~-----~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
+++|++-+.+. .+-+....++..+++..++|+.+|.+++..|+.++.+.++++.|+.-+.
T Consensus 115 AlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 115 ALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544443 2345667788888999999999999999999999999999998886554
No 90
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.40 E-value=62 Score=31.02 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 019043 188 DNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (347)
Q Consensus 188 EN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErA 223 (347)
|+.-+.+..|+......+ ..+..++.|+.|.+++.
T Consensus 66 E~iIkqa~~er~~~~~~i-~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 66 ENIIKQAESERNKRQEKI-QRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 444444444444433322 33334444444444443
No 91
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=74.35 E-value=68 Score=31.99 Aligned_cols=23 Identities=13% Similarity=0.420 Sum_probs=14.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHH
Q 019043 165 KVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ADf 187 (347)
.|.+-+.||.+||-++.|++-||
T Consensus 83 ~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 34445556666666677777776
No 92
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.19 E-value=89 Score=36.19 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSE 171 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~ 171 (347)
+.+++.++..++.++..++.+|..|+.
T Consensus 679 l~~~~~~~~~~q~el~~le~eL~~le~ 705 (1174)
T KOG0933|consen 679 LKQAQKELRAIQKELEALERELKSLEA 705 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555565555555555443
No 93
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.13 E-value=36 Score=29.66 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
.+...+..+..+...|...+..|+.++++++.++.-+....-++.+.
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333333333333
No 94
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=73.98 E-value=25 Score=33.93 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHh
Q 019043 206 QGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGS 254 (347)
Q Consensus 206 ~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k 254 (347)
+-.++-.+|-+.|+-.|.-.|+. .+++-||..|...+..+.++
T Consensus 192 VCeVCGA~Ls~~D~d~RladH~~------GK~HlGy~~IR~~l~el~e~ 234 (254)
T PF03194_consen 192 VCEVCGAFLSVGDNDRRLADHFG------GKQHLGYAKIREKLKELKEK 234 (254)
T ss_pred chhhhhhHHhccchHHHHHHHhc------cchhhhHHHHHHHHHHHHHH
Confidence 44666799999999999888864 35678999887766665544
No 95
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.94 E-value=12 Score=34.03 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=24.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 164 RKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 164 ~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
++...+++|++++++++....+|++.+|++.+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777888888888888888877754
No 96
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.76 E-value=75 Score=34.31 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhC
Q 019043 244 IYKQLVEILGSL 255 (347)
Q Consensus 244 I~kqL~~iL~k~ 255 (347)
+.+.+.++|.++
T Consensus 507 le~~~~~~f~~l 518 (650)
T TIGR03185 507 LEEEITKSFKKL 518 (650)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 97
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=73.74 E-value=54 Score=35.84 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
+..++..++.++.++..|+.++..++.++..|+.++.++..+..
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666666655555554
No 98
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=72.65 E-value=79 Score=29.08 Aligned_cols=48 Identities=6% Similarity=0.188 Sum_probs=20.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
.-++..|.++++.+.+++..+.........++.+|..+....+.+.++
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444344444444444444333333
No 99
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.97 E-value=63 Score=33.87 Aligned_cols=36 Identities=14% Similarity=0.357 Sum_probs=17.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~l 181 (347)
.++...+..+..-...|.++++.|.++++..+++..
T Consensus 229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r 264 (439)
T KOG2911|consen 229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLR 264 (439)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444555555555555555555544
No 100
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.45 E-value=94 Score=29.43 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
..++.++..+...+..+...+..++..|+..++.++..+.....++..+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555554444444444444444443
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=70.98 E-value=90 Score=29.05 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhCCCee
Q 019043 241 YQSIYKQLVEILGSLGVVP 259 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~GVe~ 259 (347)
++.--.||..+|...++.+
T Consensus 159 lE~keaqL~evl~~~nldp 177 (201)
T PF13851_consen 159 LEKKEAQLNEVLAAANLDP 177 (201)
T ss_pred HHHHHHHHHHHHHHcCCCH
Confidence 3334456666666666543
No 102
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=70.83 E-value=14 Score=28.65 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHH-HHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLS-EELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~-~el~elkdk~lRl~ADfEN~RKRte 195 (347)
..+.+++..|.++++-+..++-++..+. .....++.++.....++.++++.+.
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555566665555555555554433 3334555555555666666555443
No 103
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=70.79 E-value=56 Score=29.84 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=41.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019043 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLD 218 (347)
Q Consensus 164 ~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlD 218 (347)
.++..++.++.+++.++..+..+|+++-+++.+|++.....=...|-.-|+..++
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888889999988888888877777666655555555443
No 104
>PRK15396 murein lipoprotein; Provisional
Probab=70.48 E-value=25 Score=28.41 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=46.0
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
...++.++..++..+..+...+...+..+...+...++.-.|+..-++|+-..+
T Consensus 23 s~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 23 SNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346889999999999999999999999999988899999999988888876544
No 105
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.01 E-value=65 Score=28.86 Aligned_cols=45 Identities=13% Similarity=0.286 Sum_probs=23.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHH---HHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLER---KVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~---~l~~L~~el~elkdk~lRl~ADfE 188 (347)
....++.+|....+++..|+. -+++|++++.+++.++....++++
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554 345555555555555554444433
No 106
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.73 E-value=54 Score=25.97 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
..++|..+..+-+.+..|+.++..|+++...+++...-+..+.+.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555554444444443333
No 107
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.58 E-value=1.4e+02 Score=32.01 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHhcCCC----hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 124 SFIMETLQSYKEALASND----DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 124 ~~~~~~l~~~~ea~~~~~----e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
+.+...|-...+.+..-. ...+.++++.|..++.++..+...|..|.+.-.+.+..+..+.-.|.++||.+...
T Consensus 78 ~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~ 155 (560)
T PF06160_consen 78 PEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAH 155 (560)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455544444433222 24556667777777777777777777776666666777777777777777776544
No 108
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.56 E-value=22 Score=35.16 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=16.2
Q ss_pred CCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHH
Q 019043 139 SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEEL 173 (347)
Q Consensus 139 ~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el 173 (347)
+.|..++..+..+|.....++...+.++..++.++
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el 239 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEEL 239 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554443333333333333
No 109
>PRK09039 hypothetical protein; Validated
Probab=69.52 E-value=71 Score=32.10 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+.++..++.+|.....+..+...++..|+.+++.++.++.++.+.++-...+.
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555566666666666666666666665555444
No 110
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.10 E-value=86 Score=28.05 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
++.+.+..+..++.|+.+++..+..+..++..+++.+....
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444444444445555555544444444444444444444
No 111
>smart00338 BRLZ basic region leucin zipper.
Probab=69.08 E-value=17 Score=27.34 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=17.4
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERA 178 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkd 178 (347)
.+.+++.++..++.+...|..++..|..++..+++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555444443
No 112
>PRK01156 chromosome segregation protein; Provisional
Probab=69.08 E-value=2e+02 Score=32.16 Aligned_cols=12 Identities=8% Similarity=-0.111 Sum_probs=7.3
Q ss_pred HHHHHHHhCCCe
Q 019043 247 QLVEILGSLGVV 258 (347)
Q Consensus 247 qL~~iL~k~GVe 258 (347)
....+|..+|+.
T Consensus 765 ~~~e~~~~~~~~ 776 (895)
T PRK01156 765 LTRKYLFEFNLD 776 (895)
T ss_pred HHHHHHHHhCCC
Confidence 444567777764
No 113
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=68.97 E-value=47 Score=31.69 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=35.6
Q ss_pred HHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 135 EALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 135 ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
.|+..|++.=..+.=.....+++....++..+..+.+....++..+.++...+.++|.+..
T Consensus 77 ~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 77 LALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666654444444555556666666666666666666666666666666666665443
No 114
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.88 E-value=1.3e+02 Score=34.80 Aligned_cols=52 Identities=25% Similarity=0.288 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 019043 172 ELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (347)
Q Consensus 172 el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl 224 (347)
++.++|.+++..+++++.--+|..+|..++.. +.+.....|-...|++|++.
T Consensus 266 qlqEfkSkim~qqa~Lqrel~raR~e~keaqe-~ke~~k~emad~ad~iEmaT 317 (1243)
T KOG0971|consen 266 QLQEFKSKIMEQQADLQRELKRARKEAKEAQE-AKERYKEEMADTADAIEMAT 317 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777776666666666555443 45666666777777777763
No 115
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.70 E-value=58 Score=34.52 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=29.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
+++.++..+..+...|+++.+.|++..... -.|++.-+++.|+++.++++++...
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~i---d~~i~~av~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSI---DQQIQQAVQSETQELTKEIEQLKSE 124 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444455555555555555444444332222 3355566677777777777665443
No 116
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.61 E-value=99 Score=37.23 Aligned_cols=63 Identities=13% Similarity=0.265 Sum_probs=31.2
Q ss_pred HHHHhc--CCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 133 YKEALA--SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 133 ~~ea~~--~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
|.+|.. +.+.....+++..+..++.+...+.+++..++++..+.+..+.-+...+++.+++..
T Consensus 973 y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~ 1037 (1486)
T PRK04863 973 YEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQ 1037 (1486)
T ss_pred HHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 444455555566655555555555555555555444444444444444444444433
No 117
>PRK04406 hypothetical protein; Provisional
Probab=67.90 E-value=45 Score=26.56 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
+.+|+.+++=++.-+.+|++-+.+.+.+++.+++
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ 46 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQD 46 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 118
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=67.51 E-value=86 Score=27.47 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=12.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 019043 176 ERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 176 lkdk~lRl~ADfEN~RKRtekE~ 198 (347)
+++.|.-+...++++++.+++++
T Consensus 87 yk~eYk~llk~y~~~~~~L~k~I 109 (126)
T PF09403_consen 87 YKDEYKELLKKYKDLLNKLDKEI 109 (126)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555553
No 119
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.18 E-value=1.8e+02 Score=30.98 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=24.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHhhh
Q 019043 176 ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLL-QVLDNFERAKTQI 227 (347)
Q Consensus 176 lkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLL-pVlDnLErAl~~~ 227 (347)
+.+--.++..+|+|+=.++-.++..........-+..|| |+-+.|+.-...+
T Consensus 104 l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v 156 (475)
T PRK10361 104 MINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQV 156 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444555666666555544443333333333334444 5555555544333
No 120
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=67.14 E-value=94 Score=31.40 Aligned_cols=48 Identities=23% Similarity=0.181 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHhCCC
Q 019043 204 NAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGV 257 (347)
Q Consensus 204 ~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k~GV 257 (347)
..+-.++-.+|-+.|+=.|.-.|+. .++.-||.+|...+.++.+..+.
T Consensus 186 l~VCeVCGa~L~~~D~d~RlaDHf~------GKlHlGy~~iR~~l~eLk~~~~~ 233 (319)
T KOG0796|consen 186 LRVCEVCGAFLSVNDADRRLADHFG------GKLHLGYVLIREKLAELKKEKAK 233 (319)
T ss_pred hhHHHhhhHHHhccchHHHHHHhhc------chHHHHHHHHHHHHHHHHHHHhH
Confidence 3455678899999999999888864 46788999998888777777665
No 121
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=66.99 E-value=51 Score=29.55 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=27.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
....+..+..+...++.+|....+.+..+++.+.+...+-+.+++...+-+.+
T Consensus 82 ~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 82 VKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555555555555555555555555555555555443333
No 122
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=66.54 E-value=1.2e+02 Score=29.11 Aligned_cols=67 Identities=15% Similarity=0.316 Sum_probs=45.9
Q ss_pred HHHHhhhhhHHHHHH-----HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019043 149 EALLKSFEDEKIDLE-----RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQ 215 (347)
Q Consensus 149 E~~l~~~e~E~~~L~-----~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLp 215 (347)
+..|...+....+|. .++..++.++.+++.+...+..+|+++-+.+.+|.......=+..|=..++.
T Consensus 139 ~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~ 210 (234)
T cd07665 139 QAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIK 210 (234)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444442 3677788889999999999999999999999999877665554444333333
No 123
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.16 E-value=28 Score=27.00 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=12.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEEL 173 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el 173 (347)
.+.++|..+.-.++-+.+|...+...+.++
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I 34 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQI 34 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333333
No 124
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=66.04 E-value=81 Score=35.24 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=8.5
Q ss_pred CCCCceeEEeccccccCCeeee
Q 019043 283 FDEGVIIEEFRKGFKLGDRLLR 304 (347)
Q Consensus 283 ~e~gtVveV~qkGY~l~dRVLR 304 (347)
...|..|.|.. |--.|.||.
T Consensus 637 ~~~Gd~V~v~~--~~~~g~v~~ 656 (782)
T PRK00409 637 LKVGDEVKYLS--LGQKGEVLS 656 (782)
T ss_pred CCCCCEEEEcc--CCceEEEEE
Confidence 44455444432 333344444
No 125
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=65.54 E-value=1e+02 Score=27.53 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=13.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 165 KVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
.+..|+.++..+.....++..|+.++|
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555554
No 126
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.32 E-value=71 Score=25.70 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=12.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELS 174 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~ 174 (347)
.++|++++..-+-+.-|+-++.+|+++..
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444443333333444333333
No 127
>PRK14160 heat shock protein GrpE; Provisional
Probab=65.25 E-value=89 Score=29.68 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHH----HHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEE----LSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~e----l~elkdk~lRl~ADfEN~RKRtek 196 (347)
++.+++.++.++..++.++..|++++..++.. .+++.+--.|...+.+.+++....
T Consensus 52 ~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e 111 (211)
T PRK14160 52 NEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACE 111 (211)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433332 223444445555555555555433
No 128
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.15 E-value=90 Score=26.85 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=35.6
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
.|..+..+...++.++..|..++...+..+....+.|+.-|..+++++..+...
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r 113 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQR 113 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666777777777777777777777776665543
No 129
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.05 E-value=85 Score=35.05 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=8.5
Q ss_pred CCceeEEeccccccCCeeeec
Q 019043 285 EGVIIEEFRKGFKLGDRLLRP 305 (347)
Q Consensus 285 ~gtVveV~qkGY~l~dRVLRP 305 (347)
.|..|.| ++|.-.|.||.-
T Consensus 627 ~Gd~V~v--~~~~~~g~v~~i 645 (771)
T TIGR01069 627 IGDKVRI--RYFGQKGKIVQI 645 (771)
T ss_pred CCCEEEE--ccCCceEEEEEE
Confidence 3444443 334444555544
No 130
>PRK10869 recombination and repair protein; Provisional
Probab=64.89 E-value=70 Score=34.15 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
.+..|++++..++++|..+...+-..|+...+.+..
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~ 377 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQ 377 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666666555555443
No 131
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=64.77 E-value=74 Score=30.76 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=47.8
Q ss_pred CCchhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 121 APTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 121 ~~~~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
...+.|...|.+=++=+ ..+..|+|+++.....++..|+.++..|++..-.|-+|...++
T Consensus 75 ~~~~siLpIVtsQRDRF----R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRF----RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred CCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666776555443 4789999999999999999999999999999999888866553
No 132
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.68 E-value=1.6e+02 Score=32.14 Aligned_cols=51 Identities=14% Similarity=0.306 Sum_probs=34.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
...+.+.++.++++++.++..++..+..+++.++..+.++..+.+..+...
T Consensus 322 ~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~ 372 (594)
T PF05667_consen 322 EQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAEN 372 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777777776666666555443
No 133
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=64.56 E-value=98 Score=29.15 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhhhhHHHHH-------HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDL-------ERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L-------~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
.+.++...+..++++...| +.+...|.+++..+++....++++++.+++|+..=
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 4455555555555555444 44556677778889999999999999999998653
No 134
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=64.46 E-value=25 Score=31.22 Aligned_cols=66 Identities=12% Similarity=0.316 Sum_probs=46.0
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhhhhh-------------HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 131 QSYKEALASNDDTKAAEIEALLKSFED-------------EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 131 ~~~~ea~~~~~e~k~~eiE~~l~~~e~-------------E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
|..-.-+..-+...+-.++..-.-+.+ +..+|+.+-..|..+++.++..+.|+.-+.++|+-+.++
T Consensus 35 ReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 35 RELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666655544333222 456777788888888888999999999999999988765
No 135
>PRK14154 heat shock protein GrpE; Provisional
Probab=64.44 E-value=85 Score=29.78 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
+..++.++..+++++.+++.++.-+.++.+-+ -.|...|.+++++...
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNy---RKR~~kE~e~~~~~a~ 101 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNL---RKRIEREKADIIKFGS 101 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44445555566666666666665555544444 3444455555554443
No 136
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.12 E-value=50 Score=26.06 Aligned_cols=34 Identities=12% Similarity=0.396 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
.|..++..++.++..++.++....+++++++.|+
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455555555555555554443
No 137
>PRK10780 periplasmic chaperone; Provisional
Probab=64.04 E-value=1.1e+02 Score=27.29 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhCCCeee
Q 019043 244 IYKQLVEILGSLGVVPV 260 (347)
Q Consensus 244 I~kqL~~iL~k~GVe~I 260 (347)
|.+-+..+=+..|+..|
T Consensus 125 i~~ai~~vak~~gy~~V 141 (165)
T PRK10780 125 IQTAVKSVANKQGYDLV 141 (165)
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 33444444466676654
No 138
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=63.97 E-value=80 Score=27.22 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=14.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSA 175 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~e 175 (347)
.+......++.+...|+.++..+..++..
T Consensus 5 ~Lk~~~~~L~~~~~~le~~i~~~~~~~k~ 33 (171)
T PF03357_consen 5 KLKKTIRRLEKQIKRLEKKIKKLEKKAKK 33 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555444443
No 139
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=63.85 E-value=1.4e+02 Score=28.76 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=35.8
Q ss_pred HHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHhCCCeee
Q 019043 208 EVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPV 260 (347)
Q Consensus 208 ~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k~GVe~I 260 (347)
.++-.-|.-+|+=.|...|+. .++.-||-++...+...|+++|+...
T Consensus 189 ~iCgayLsrlDtdrrladHf~------GklHlGy~~~R~dl~~llk~~~~sr~ 235 (258)
T COG5200 189 GICGAYLSRLDTDRRLADHFN------GKLHLGYLLVRSDLADLLKKFGISRV 235 (258)
T ss_pred hhhhhHHHhcchhhHHHHHhc------cchhhhHHHHHHHHHHHHHHhccchh
Confidence 455566677777666655553 46788999999999999999998774
No 140
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.26 E-value=1.8e+02 Score=32.33 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=23.1
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
.+.+..-+++.++++++..+.+..+.+.+||.++..--+++.+|+++
T Consensus 572 ~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 572 QQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444455555544455555555555555555555544
No 141
>PRK14158 heat shock protein GrpE; Provisional
Probab=62.30 E-value=1.1e+02 Score=28.55 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=27.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
.+..++.++..++.++.+++.++.-+.++..-+ -.|...|.++.++....
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~---RkR~~kE~e~~~~~a~~ 90 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENY---RKRVQKEKEELLKYGNE 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665555444444 44555555555544433
No 142
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.29 E-value=76 Score=25.04 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
..++.+-..+|..+..|...|..+.-.+...++.++.+....-....+++++..+
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777777777777777777777777777766654
No 143
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=61.88 E-value=2.3e+02 Score=30.51 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=59.6
Q ss_pred CCchhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 121 APTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 121 ~~~~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
.....|.+-|.-|=+|+-...+-...+....+.-+++..+-|+..+..+...+.+|-+++..+...|+.-++-+.-.+.+
T Consensus 308 sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e 387 (531)
T PF15450_consen 308 SKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSE 387 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34456777777777777666555666666777777777777888888888899999999999998888777666544444
Q ss_pred H
Q 019043 201 L 201 (347)
Q Consensus 201 ~ 201 (347)
+
T Consensus 388 ~ 388 (531)
T PF15450_consen 388 A 388 (531)
T ss_pred H
Confidence 4
No 144
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=61.69 E-value=41 Score=27.75 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
.++.++..|.+|.+.++-...-..++..||+-|-.-|
T Consensus 27 ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkne 63 (87)
T PF10883_consen 27 KAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445566777777777777778889999998765544
No 145
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=61.65 E-value=43 Score=31.56 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 127 METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (347)
Q Consensus 127 ~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~ 180 (347)
.++.-...+++- ++.-.++..+|..+++|+..|++-|...+..+.++|-++
T Consensus 31 ~a~s~s~~~~LS---e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 31 VAASASEFEALS---EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred hhhhhhHHhhhc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444443 334448889999999999999998888888877776553
No 146
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=61.34 E-value=51 Score=25.44 Aligned_cols=42 Identities=12% Similarity=0.306 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
+++|+...+...-.++..+++...+..-+.+++++++++++.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555566666666665543
No 147
>PRK14161 heat shock protein GrpE; Provisional
Probab=61.29 E-value=1.2e+02 Score=28.02 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 175 AERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 175 elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
++.+--.|...|.+++++......
T Consensus 48 efeN~rkR~~ke~~~~~~~a~~~~ 71 (178)
T PRK14161 48 EIDNTRKRLEKARDEAKDYAIATF 71 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666666666654443
No 148
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=61.22 E-value=1.7e+02 Score=28.69 Aligned_cols=50 Identities=8% Similarity=0.129 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A 205 (347)
.++..++..++...+.+....+++|.....+++.|+.+...+....-...
T Consensus 167 ~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~ 216 (258)
T cd07679 167 PEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQC 216 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35677888899999999999999999999999999999988876655443
No 149
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=61.05 E-value=2.2e+02 Score=33.16 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=19.1
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~l 181 (347)
...+.+.+.+.....+.+++.++..+.+++.++.+.|.
T Consensus 435 ~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 435 RYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444555555555555555555555554
No 150
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=60.87 E-value=1.1e+02 Score=26.37 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHhCCCeeec
Q 019043 237 INNSYQSIYKQLVEILGSLGVVPVE 261 (347)
Q Consensus 237 l~eg~~~I~kqL~~iL~k~GVe~I~ 261 (347)
+..-+..|.+-+..+-+++|+..|=
T Consensus 111 ~~~i~~~i~~~v~~~a~~~g~~~Vl 135 (158)
T PF03938_consen 111 LQPIQKKINKAVEEYAKENGYDLVL 135 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3444556677777788888887763
No 151
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=60.54 E-value=2.4e+02 Score=30.10 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=27.2
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e 207 (347)
+..+..+...+..++..++..++..+......++.+++.+.++..+++++-..+.+
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile 124 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFE 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444555556666666665555544443
No 152
>PRK10698 phage shock protein PspA; Provisional
Probab=60.45 E-value=57 Score=30.77 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
..+..|+.++......+..++..+.++...++.+|
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 153
>PHA02562 46 endonuclease subunit; Provisional
Probab=60.16 E-value=2.1e+02 Score=29.63 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=8.1
Q ss_pred cCCCCCCCccccceee
Q 019043 261 ETVGNPFDPLLHEAIM 276 (347)
Q Consensus 261 ~~vGe~FDP~lHEAV~ 276 (347)
...|..|+.. |..++
T Consensus 288 p~C~~~~~~~-~~~~~ 302 (562)
T PHA02562 288 PTCTQQISEG-PDRIT 302 (562)
T ss_pred CCCCCcCCCc-HHHHH
Confidence 3456777665 44333
No 154
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=60.10 E-value=48 Score=27.35 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=40.6
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
+..++.++.+++..+..+...+...+..++..+...+++-.|+..-++|.
T Consensus 22 s~~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 22 NEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33688888888888888888888888888888888888888887777764
No 155
>PRK00736 hypothetical protein; Provisional
Probab=60.09 E-value=54 Score=25.52 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=13.7
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEEL 173 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el 173 (347)
..+.++|..+...+.-+.+|...+...++++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i 35 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTV 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444444444444444433333
No 156
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.88 E-value=55 Score=29.98 Aligned_cols=51 Identities=12% Similarity=0.288 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhhhH---HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDE---KIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 145 ~~eiE~~l~~~e~E---~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
+.++=..|+.+... ...+..+...|+.++.+++.++..+..+.+.+.++..
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444432 3455667777778888888888888888777776654
No 157
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.88 E-value=78 Score=28.12 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=13.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 163 ERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 163 ~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
..+|..|.+++.+++..+..+.+++.+++..
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444444444444444444444433
No 158
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.55 E-value=2.4e+02 Score=29.97 Aligned_cols=107 Identities=15% Similarity=0.081 Sum_probs=58.0
Q ss_pred hhHHHHHH-HHhhhhhHHHHHHHHHHhHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019043 143 TKAAEIEA-LLKSFEDEKIDLERKVVNLSEELS---AERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLD 218 (347)
Q Consensus 143 ~k~~eiE~-~l~~~e~E~~~L~~~l~~L~~el~---elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlD 218 (347)
..+.+++. +|+......+.+.++...++.+.. ..+.-.-|....+++--+|.++|+...+ .....+++.+.-+.+
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~-E~n~~l~knq~vw~~ 417 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER-EENKKLIKNQDVWRG 417 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHH
Confidence 33444443 444444444444443333333322 2334445566666666677777766665 456677888888888
Q ss_pred hHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHH
Q 019043 219 NFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILG 253 (347)
Q Consensus 219 nLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~ 253 (347)
.++.-.+..+. ......+-++.+..|+.+++-
T Consensus 418 kl~~~~e~~~~---~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 418 KLKELEEREKE---ALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHhe
Confidence 77765544321 112233455667777777653
No 159
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=59.18 E-value=50 Score=28.92 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=22.6
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
++.+++.++..+++++.++..++..+.++++.+ ..|+..+.+++++.
T Consensus 12 ~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~---~~r~~~e~~~~~~~ 58 (165)
T PF01025_consen 12 EIEELEEELEELEKEIEELKERLLRLQAEFENY---RKRLEKEKEEAKKY 58 (165)
T ss_dssp HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 333444444455555555555555555444444 33444444555443
No 160
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=59.16 E-value=40 Score=33.57 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=16.1
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
+...+.++...+.++...+.++.++.+++..+..+|+
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~ 259 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYE 259 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 161
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=59.06 E-value=1.5e+02 Score=27.54 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=29.3
Q ss_pred HhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 136 ALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 136 a~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
|+..|++.-..+.=......+.....|+.++..+...+..++.++..+...++.+|.+
T Consensus 78 Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 78 ALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333223334444455555555555555666666666666666655533
No 162
>PRK02119 hypothetical protein; Provisional
Probab=58.97 E-value=77 Score=25.03 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
.+.+|+.+++=.+.-+.+|++-+.+.+.+++.+++
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ 44 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQV 44 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 163
>PRK04863 mukB cell division protein MukB; Provisional
Probab=58.71 E-value=2.8e+02 Score=33.61 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=5.1
Q ss_pred HHhhhhhhHHH
Q 019043 212 RLLQVLDNFER 222 (347)
Q Consensus 212 dLLpVlDnLEr 222 (347)
+|-..+++|+.
T Consensus 439 eLe~~LenF~a 449 (1486)
T PRK04863 439 NAEDWLEEFQA 449 (1486)
T ss_pred HHHHHHHHHHH
Confidence 34444445444
No 164
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.61 E-value=2e+02 Score=28.70 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=27.3
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
.+..++.+...|.+.+..+..-+..+.+++..+..++.++++....
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3334444445555555555555566777777777777777665443
No 165
>PRK00295 hypothetical protein; Provisional
Probab=58.60 E-value=66 Score=25.01 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=15.7
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELS 174 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~ 174 (347)
..+.++|..+.-.++-+.+|.+.+...++++.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~ 36 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIE 36 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444444444443
No 166
>PRK14151 heat shock protein GrpE; Provisional
Probab=58.51 E-value=1.3e+02 Score=27.69 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
.+++++..+++++.+++.++.-+.++ +.+--.|...|.+++++.....
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae---~eN~rkR~~kE~e~~~~~a~~~ 71 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAAD---LQNVRRRAEQDVEKAHKFALEK 71 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555544444 3344455556666666554433
No 167
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.50 E-value=58 Score=25.24 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
+.+.+|+.+++=++.-++++++-+.+.+.+++.+++++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555554444443
No 168
>PRK14162 heat shock protein GrpE; Provisional
Probab=58.44 E-value=1.3e+02 Score=28.11 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
+..++.++..++.++.+++.++.-+.++.+-+ -.|...|.++.++....
T Consensus 41 ~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~---rkR~~kE~e~~~~~a~~ 89 (194)
T PRK14162 41 VEDLEKEIADLKAKNKDLEDKYLRSQAEIQNM---QNRYAKERAQLIKYESQ 89 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 33444555556666666666665555444443 45555555665555433
No 169
>PRK04406 hypothetical protein; Provisional
Probab=58.16 E-value=94 Score=24.74 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=23.4
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
..+.++|..+.-.++-+.+|.+.+...++ .+.++.+.+..++.|+
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~-------~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQL-------LITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34445555555555544455444444444 4455556666666555
No 170
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=57.99 E-value=91 Score=25.43 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=6.7
Q ss_pred HHHHHHHHhhhhh
Q 019043 206 QGEVMERLLQVLD 218 (347)
Q Consensus 206 ~e~ll~dLLpVlD 218 (347)
-+.-++.||.-+|
T Consensus 65 WqerLr~LLGkm~ 77 (79)
T PRK15422 65 WQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHhhc
Confidence 3444555655544
No 171
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.94 E-value=1.1e+02 Score=32.60 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=10.5
Q ss_pred CCeeecCCCCCCCccccceee
Q 019043 256 GVVPVETVGNPFDPLLHEAIM 276 (347)
Q Consensus 256 GVe~I~~vGe~FDP~lHEAV~ 276 (347)
.+-.+|-+-.-+|+..-..+.
T Consensus 464 ~~lilDEp~~gld~~~~~~~~ 484 (563)
T TIGR00634 464 TTLIFDEVDVGVSGETAQAIA 484 (563)
T ss_pred CEEEEECCCCCCCHHHHHHHH
Confidence 455555443346666544444
No 172
>PLN02939 transferase, transferring glycosyl groups
Probab=57.82 E-value=3.6e+02 Score=31.35 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=12.4
Q ss_pred CCCCCcccchhhhhhccccccccc
Q 019043 26 KSPKPICLSFRQRLISTSRLYHRS 49 (347)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~ 49 (347)
+||.|+-++.+++++.|.|++.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~ 41 (977)
T PLN02939 18 RSRAPFYLPSRRRLAVSCRARRRG 41 (977)
T ss_pred ccCCCCCCchhccccccccccCCC
Confidence 344555554555555555555544
No 173
>PRK02119 hypothetical protein; Provisional
Probab=57.63 E-value=79 Score=24.96 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+..+.++|..+.-.++-+.+|...+...++++ .++...+..++.|+
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i-------d~L~~ql~~L~~rl 53 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVI-------DKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 34555666666555555555555555555444 44455555555555
No 174
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=57.24 E-value=70 Score=27.23 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 126 IMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 126 ~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
+.+-..-.|.|+. ....+..++...|...+..+..+++++..|.=....|..+...++.|+++.
T Consensus 10 LraQ~~vLKKaVi-eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 10 LRAQNQVLKKAVI-EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455554 334555566666666666666666666666655555655666666666543
No 175
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=57.08 E-value=69 Score=29.77 Aligned_cols=11 Identities=18% Similarity=-0.031 Sum_probs=5.2
Q ss_pred CCchhHHHHHH
Q 019043 121 APTSFIMETLQ 131 (347)
Q Consensus 121 ~~~~~~~~~l~ 131 (347)
.+-+.|..+|.
T Consensus 90 ~l~~RL~kLL~ 100 (190)
T PF05266_consen 90 FLRSRLNKLLS 100 (190)
T ss_pred HHHHHHHHHHH
Confidence 34445555543
No 176
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.04 E-value=70 Score=28.41 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEE 172 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~e 172 (347)
+.++..++..+++++..|+.++..|..+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 177
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=57.00 E-value=60 Score=28.67 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCC------hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 129 TLQSYKEALASND------DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 129 ~l~~~~ea~~~~~------e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
+-+.|+..-..+. .+.+.+....+...+.-..+|+.++.....|+..++.++..+..-..++-+
T Consensus 60 LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 60 LKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345555444444 345555566666666666667777766666666666666555554444433
No 178
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.84 E-value=33 Score=28.81 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=10.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLS 170 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~ 170 (347)
...+++.++..++.++.+++++...|.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~ 54 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLF 54 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333333
No 179
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=56.78 E-value=80 Score=25.61 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=47.3
Q ss_pred CCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 139 SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 139 ~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
..+.+|+.++-.....+..+...|+..+..+-.+....++.-.|+.+.++|.-++
T Consensus 21 c~s~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~s 75 (78)
T COG4238 21 CSSNAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQS 75 (78)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999998889999999999999999887554
No 180
>PRK00295 hypothetical protein; Provisional
Probab=56.66 E-value=78 Score=24.63 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
++.+.+|+.+++=++.-+.++++-+.+-+.+++.+++.+.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666665555443
No 181
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=56.33 E-value=2.6e+02 Score=33.36 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=32.0
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErA 223 (347)
+.......+..+.++.+..|++..+..+.-+.+..-...+-|.|.++-+.++.+...+ ..+.|.-+++|++.
T Consensus 1647 ~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~--a~~kl~~l~dLe~~ 1718 (1758)
T KOG0994|consen 1647 KTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQ--ANEKLDRLKDLELE 1718 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3333333344444444444444333322222233333456677766665555543322 23344555555544
No 182
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.26 E-value=2.2e+02 Score=28.39 Aligned_cols=108 Identities=11% Similarity=0.115 Sum_probs=50.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK----------ERLSLVTNAQGEVMERL 213 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek----------E~e~~~~~A~e~ll~dL 213 (347)
|+.+...++..++.++..++.+|....++..++-+.+..-.++.+.-+.-..+ +....+. ..+.=+...
T Consensus 9 KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~-~a~~~L~~a 87 (344)
T PF12777_consen 9 KLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKE-EAEEELAEA 87 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45555555555555555555555555554444444333222222222222211 1111222 234445677
Q ss_pred hhhhhhHHHHHhhhhhcccc-hHhhh---hHHHHHHHHHHHHH
Q 019043 214 LQVLDNFERAKTQIKVQTEG-EEKIN---NSYQSIYKQLVEIL 252 (347)
Q Consensus 214 LpVlDnLErAl~~~~~e~e~-~~~l~---eg~~~I~kqL~~iL 252 (347)
+|.++.-..|++.++...-. ..+|. .++.+|..-+.-+|
T Consensus 88 ~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl 130 (344)
T PF12777_consen 88 EPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILL 130 (344)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHH
Confidence 88888888888777643211 12233 24555555544444
No 183
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.22 E-value=1.9e+02 Score=27.63 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=13.2
Q ss_pred ccCCchhHHHHHHHHHHH
Q 019043 119 EEAPTSFIMETLQSYKEA 136 (347)
Q Consensus 119 ~~~~~~~~~~~l~~~~ea 136 (347)
...|++.|..++......
T Consensus 10 ~k~p~psL~dai~~v~~r 27 (218)
T KOG1655|consen 10 PKEPPPSLQDAIDSVNKR 27 (218)
T ss_pred CCCCChhHHHHHHHHHHh
Confidence 357888899998866543
No 184
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.17 E-value=1.7e+02 Score=27.01 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=24.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
...+..++..|+.++.+++.+...+.+..+...++....
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666665544
No 185
>PRK04325 hypothetical protein; Provisional
Probab=56.08 E-value=77 Score=25.04 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=13.5
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEE 172 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~e 172 (347)
..+.++|..+...++-+.+|.+.+...+++
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~ 38 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQT 38 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444444444444444443333
No 186
>PRK02793 phi X174 lysis protein; Provisional
Probab=55.93 E-value=90 Score=24.54 Aligned_cols=27 Identities=26% Similarity=0.163 Sum_probs=11.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLS 170 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~ 170 (347)
.+.++|..+.-.++-+.+|.+.+...+
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq 35 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHE 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433333333
No 187
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=55.90 E-value=1.6e+02 Score=26.62 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=43.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNL-SEELSAERARILRISADFDNFRKRTEKERLSLVTNAQ 206 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L-~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~ 206 (347)
.-.+++.....+.....+|+.++..+ +.+...++....+++.|++.++.++..+...++....
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~k 108 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVK 108 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777766543 3456677778888888888888888887776665443
No 188
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=55.81 E-value=2.3e+02 Score=28.43 Aligned_cols=58 Identities=16% Similarity=0.330 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
.++.++-+++..+..+..++..+|..|-.++.++.+++.-+.-+.+.+|++...--+.
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~ 215 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEE 215 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666777777777777777777777777777777777777765543333
No 189
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.78 E-value=45 Score=27.48 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=11.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAE 176 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~el 176 (347)
++..+..++.++..+..++..+.+++.++
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 190
>PRK14150 heat shock protein GrpE; Provisional
Probab=55.60 E-value=1.8e+02 Score=27.12 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=17.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019043 180 ILRISADFDNFRKRTEKERLSLVTNAQG 207 (347)
Q Consensus 180 ~lRl~ADfEN~RKRtekE~e~~~~~A~e 207 (347)
+..+.+++.|.-.|+..+.+++++....
T Consensus 50 l~~~~~~~kd~~lR~~AefeN~rkR~~k 77 (193)
T PRK14150 50 LAEAQAEERDSVLRARAEVENIRRRAEQ 77 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333446666667777777777666544
No 191
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.02 E-value=78 Score=24.45 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=25.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
..+|..+......++.+|.+.+..+.++..++.++.-+++.+|-
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555555555566666666666666666666666665553
No 192
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=54.87 E-value=1.1e+02 Score=26.50 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQI 227 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~ 227 (347)
++..-..+.+.+++.++.....++.+.+.+.++.-+..+...++.....+.+..+.......=.+.=-.+......+..-
T Consensus 33 l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e 112 (156)
T PRK05759 33 LEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQE 112 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcccchHhhhhHHHHHHHHHHHHHHhCCCeeecC-CCCCCCcccccee
Q 019043 228 KVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVET-VGNPFDPLLHEAI 275 (347)
Q Consensus 228 ~~e~e~~~~l~eg~~~I~kqL~~iL~k~GVe~I~~-vGe~FDP~lHEAV 275 (347)
... ..+++.+-.....+....- +|+..|+..|..+
T Consensus 113 ~~~-------------a~~~l~~~~~~lA~~~a~k~l~~~~d~~~~~~~ 148 (156)
T PRK05759 113 RKR-------------AREELRKQVADLAVAGAEKILGRELDAAAQSDL 148 (156)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 193
>PRK00736 hypothetical protein; Provisional
Probab=54.86 E-value=98 Score=24.08 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
++.+.+|+.+++=++.-+.+|++-+.+-+.+++.+++++..=
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777777777666655443
No 194
>PRK14153 heat shock protein GrpE; Provisional
Probab=54.78 E-value=94 Score=29.12 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
+..++.++..+++++.+++.++.-+.++.+ +-..|...+.+++++.....
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfe---N~rKR~~kE~e~~~~~a~~~ 84 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFD---NFRKRTAREMEENRKFVLEQ 84 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666666655554444 44445555556665554433
No 195
>PRK02793 phi X174 lysis protein; Provisional
Probab=54.73 E-value=74 Score=25.01 Aligned_cols=37 Identities=8% Similarity=0.147 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
+.+.+|+.+++=.+.-+.+|++-+.+.+.+++.+++.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~ 44 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDH 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455444444555555555555444444433
No 196
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=54.72 E-value=1.2e+02 Score=29.07 Aligned_cols=14 Identities=7% Similarity=-0.052 Sum_probs=8.1
Q ss_pred CCCCceeEEecccc
Q 019043 283 FDEGVIIEEFRKGF 296 (347)
Q Consensus 283 ~e~gtVveV~qkGY 296 (347)
...|.-+.|.-.+|
T Consensus 255 i~~G~~v~v~~~~~ 268 (334)
T TIGR00998 255 VRIGQPVTIRSDLY 268 (334)
T ss_pred CCCCCEEEEEEecC
Confidence 45666666664444
No 197
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=54.49 E-value=1.4e+02 Score=32.11 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHhhhhhH-------HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDE-------KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E-------~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~ 203 (347)
+.++.+++..++.+... +....+++..|+.+++..++++..+..++++-++++++...++++
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 44555555555555442 223444555666666666666666666666666666665555443
No 198
>PLN02372 violaxanthin de-epoxidase
Probab=54.11 E-value=1.4e+02 Score=31.41 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=8.1
Q ss_pred HHHHHHHHHhHHHHHHH
Q 019043 176 ERARILRISADFDNFRK 192 (347)
Q Consensus 176 lkdk~lRl~ADfEN~RK 192 (347)
+.+.+..++.+.+||-+
T Consensus 408 ~~~~~~~l~~~~~~f~~ 424 (455)
T PLN02372 408 LEEGLKELEQDEENFLK 424 (455)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444445555555444
No 199
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=53.83 E-value=1.9e+02 Score=26.92 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 019043 186 DFDNFRKRTEKER 198 (347)
Q Consensus 186 DfEN~RKRtekE~ 198 (347)
.++.|-+++.+|.
T Consensus 148 ~~e~f~~~~~~E~ 160 (201)
T cd07622 148 ELNEFVKKALEDV 160 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 200
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=53.53 E-value=3.1e+02 Score=29.32 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=13.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
..+++..+..+.+++..++.+...+.+.+..++
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333333333333
No 201
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.21 E-value=2.9e+02 Score=32.61 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=34.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
.+++..|..+..++..+...+..++.++..+...+.+++++++.++.+...+...
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKK 938 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666666666666667777777777777776665544433
No 202
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.19 E-value=37 Score=35.92 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=18.6
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHH
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELS 174 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~ 174 (347)
+..++.+ +.|.+.+....+|+++|+.++.+++
T Consensus 62 FddkVnq--SALteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 62 FDDKVRQ--HATTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 5566666666666666666655544
No 203
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=53.04 E-value=53 Score=32.69 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=30.9
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
..++.+.-+...+..+|....-....|-.|+.|-.++++..|||+++
T Consensus 112 ~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 112 SAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666667777777777888877777653
No 204
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=52.89 E-value=1.3e+02 Score=24.63 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 019043 169 LSEELSAERARILRISADFDN 189 (347)
Q Consensus 169 L~~el~elkdk~lRl~ADfEN 189 (347)
|+-+++++|++...+..+.++
T Consensus 23 LqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443333433333
No 205
>PRK00846 hypothetical protein; Provisional
Probab=52.88 E-value=86 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=11.5
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLS 170 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~ 170 (347)
..+.++|..+.-.+.-+.+|.+.+....
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq 40 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADAR 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333333
No 206
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.87 E-value=2.5e+02 Score=28.10 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=21.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
.++..++..+..+...|..++..+-+++.++++++.-+..++..||
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK 75 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELK 75 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443
No 207
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=52.69 E-value=3.2e+02 Score=29.25 Aligned_cols=55 Identities=20% Similarity=0.435 Sum_probs=37.2
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
..+.++...|..++++-.++...+..|.+.-...++++.++...+.+.+|+++|.
T Consensus 379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 379 EELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555566666666666666667777766777777777777777777777664
No 208
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.64 E-value=1.8e+02 Score=32.33 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=45.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErA 223 (347)
.-.+|+..+..+..++....++|..++++++.++++..++..-|+..+.|-+.=... -..+-..+..-+|++-.-||.
T Consensus 559 ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R--~~~vl~~l~~~~P~LS~AEr~ 636 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR--VDRVLQLLNSQLPVLSEAERE 636 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccCCCCCHHHHH
Confidence 345556666666666666666777777777777777777666666666553322221 112222345556666666665
Q ss_pred H
Q 019043 224 K 224 (347)
Q Consensus 224 l 224 (347)
+
T Consensus 637 ~ 637 (717)
T PF10168_consen 637 F 637 (717)
T ss_pred H
Confidence 4
No 209
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.52 E-value=1.4e+02 Score=28.65 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
+++|..++.+++..|++++++.+.++..++.+.++++|..+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777777777777777777777777766543
No 210
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=52.37 E-value=95 Score=28.50 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~ 180 (347)
++.-+++..+|..+++|+..|.+-|...+....++|-++
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344567778899999999999999988888888888663
No 211
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=52.23 E-value=2e+02 Score=26.86 Aligned_cols=22 Identities=14% Similarity=0.150 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhhhHHHHHhhh
Q 019043 206 QGEVMERLLQVLDNFERAKTQI 227 (347)
Q Consensus 206 ~e~ll~dLLpVlDnLErAl~~~ 227 (347)
.++.+..+...+++|+..+..+
T Consensus 79 ~E~ql~q~~~ql~nLEq~~~~i 100 (191)
T PTZ00446 79 YEQEIENILNNRLTLEDNMINL 100 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544433
No 212
>PRK04325 hypothetical protein; Provisional
Probab=52.13 E-value=69 Score=25.34 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
++.+.+|+.+++=++.-+.+|++-+.+-+.+++.+++++
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555444443
No 213
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.66 E-value=1.7e+02 Score=25.80 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=25.3
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
.++.+++......+.++..|..++..|+.++..+.+++..+...+
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555566666666666666666555555555444443
No 214
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.62 E-value=2.1e+02 Score=30.12 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=47.1
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELS-AERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDN 219 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~-elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDn 219 (347)
.+..+.++......+..++..|+++++...+++. .+|.--.++.-.|---|++++|.++.... ++..|..|+++
T Consensus 231 ~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~-----~l~~l~~vl~~ 305 (439)
T KOG2911|consen 231 IDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVS-----SLNNLETVLSQ 305 (439)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHH
Confidence 3455666666666677777777777776665543 45555556666666677888887766443 23444444544
Q ss_pred HHH
Q 019043 220 FER 222 (347)
Q Consensus 220 LEr 222 (347)
+.-
T Consensus 306 Id~ 308 (439)
T KOG2911|consen 306 IDN 308 (439)
T ss_pred HHh
Confidence 443
No 215
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=51.54 E-value=2e+02 Score=26.51 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=19.7
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN 189 (347)
...++.++..|+.++..|+.++.+++.++..+...++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554444443
No 216
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.18 E-value=1.1e+02 Score=26.53 Aligned_cols=48 Identities=19% Similarity=0.373 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
-+..+.+.|...+.|+..++.++..+..+.+.+.+.+.++..+.+..+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777777777777777777777777776664
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=51.18 E-value=1e+02 Score=29.66 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
-...++..+|..++.|+..|+.+++.+.-++++++++-.-+..|+++..+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888888888888888888888888888887777777777443
No 218
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.01 E-value=53 Score=24.91 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 159 KIDLERKVVNLSEELSAERARILRI 183 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl 183 (347)
+..++.++..++++..+++.++.++
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444443333333
No 219
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=50.94 E-value=39 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 168 NLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 168 ~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
.|..+...++.++.++++.|..|||
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566777888887776
No 220
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=50.62 E-value=4.7e+02 Score=30.54 Aligned_cols=7 Identities=43% Similarity=0.819 Sum_probs=3.1
Q ss_pred ccccccc
Q 019043 41 STSRLYH 47 (347)
Q Consensus 41 ~~~~~~~ 47 (347)
++||...
T Consensus 100 v~Rri~r 106 (1163)
T COG1196 100 VTRRIYR 106 (1163)
T ss_pred EEEEEEE
Confidence 4444444
No 221
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=50.60 E-value=3.6e+02 Score=29.26 Aligned_cols=52 Identities=17% Similarity=0.359 Sum_probs=26.8
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHHHhHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELS-------AERARILRISADFDNFRKRTE 195 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~-------elkdk~lRl~ADfEN~RKRte 195 (347)
..++++.++..+..|+.+++.++.+..+.+. .+...+--+.|+..-+++|..
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 4555566666666666666665555433332 233334445555555555443
No 222
>PRK14141 heat shock protein GrpE; Provisional
Probab=50.40 E-value=1.7e+02 Score=27.76 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=25.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
++.+|..+++++.+++.++.-+.++.+ +--.|...|.+++++.....
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~e---N~RKR~~kE~e~~~~~a~~~ 82 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEME---NLRKRTQRDVADARAYGIAG 82 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666655554443 34455666666666554433
No 223
>PRK02224 chromosome segregation protein; Provisional
Probab=50.38 E-value=3.6e+02 Score=29.89 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=7.9
Q ss_pred HHHHHHHHHhCCCeeec
Q 019043 245 YKQLVEILGSLGVVPVE 261 (347)
Q Consensus 245 ~kqL~~iL~k~GVe~I~ 261 (347)
+..+...+...-+..|.
T Consensus 724 ~~~~~~~~~~~~~~~~~ 740 (880)
T PRK02224 724 YGDLRAELRQRNVETLE 740 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455444445554
No 224
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.20 E-value=2.3e+02 Score=30.07 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhCCC
Q 019043 244 IYKQLVEILGSLGV 257 (347)
Q Consensus 244 I~kqL~~iL~k~GV 257 (347)
-...+.+...+||.
T Consensus 309 RL~~l~~LkrKyg~ 322 (563)
T TIGR00634 309 RLAQIKRLKRKYGA 322 (563)
T ss_pred HHHHHHHHHHHhCC
Confidence 34455666677773
No 225
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=49.91 E-value=91 Score=27.43 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 019043 188 DNFRKRTEKERLSL 201 (347)
Q Consensus 188 EN~RKRtekE~e~~ 201 (347)
.+++.+.++|+...
T Consensus 59 ~~i~~q~~~e~~~r 72 (131)
T PF11068_consen 59 QSIQQQFEQEKQER 72 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666555443
No 226
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=49.48 E-value=1.4e+02 Score=25.49 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHh--hhhhHHHHHHHHHHhHHHHHHHHHHH
Q 019043 130 LQSYKEALASNDDTKAAEIEALLK--SFEDEKIDLERKVVNLSEELSAERAR 179 (347)
Q Consensus 130 l~~~~ea~~~~~e~k~~eiE~~l~--~~e~E~~~L~~~l~~L~~el~elkdk 179 (347)
+..|+. .+...+..||..+. ...++++.|.+.+..+-+++.+++.+
T Consensus 28 f~efKd----~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e 75 (102)
T PF01519_consen 28 FDEFKD----SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVE 75 (102)
T ss_dssp HHHH-------HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446664 44455556666666 55556666666555555555555333
No 227
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.26 E-value=3.3e+02 Score=31.78 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=12.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
....+|.+++.++..+..++..+...+
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~ 471 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELY 471 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 228
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=49.24 E-value=2.9e+02 Score=29.57 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=28.3
Q ss_pred CCchhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHH
Q 019043 121 APTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLER 164 (347)
Q Consensus 121 ~~~~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~ 164 (347)
.-|..+.++-.-|++....|-.-.-..++.++..+++++.....
T Consensus 227 ~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~ 270 (569)
T PRK04778 227 ELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLA 270 (569)
T ss_pred HhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 34667788888888888877655544555555555555555333
No 229
>PRK14146 heat shock protein GrpE; Provisional
Probab=49.19 E-value=2.4e+02 Score=26.79 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
+..++.++..++.++.+++.++.-+.++ +.+--.|...|.+++++.....+
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~Ad---feN~rkR~~kE~e~~~~~a~e~~ 106 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAE---FQNFKRRSAQEFVSIRKEAVKSL 106 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666677777777777666655544 44445566666666666654443
No 230
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.19 E-value=79 Score=23.68 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRI 183 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl 183 (347)
++.++..|..+...|..++..++..+..+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334344444444444443333333
No 231
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=49.15 E-value=2e+02 Score=25.80 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH-----------------------HHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF-----------------------DNFRKRTEKER 198 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADf-----------------------EN~RKRtekE~ 198 (347)
+..-..|.+.+...++...+.++.+...++.+.+.+.+...+.++. +..+...+.|+
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek 131 (167)
T PRK08475 52 KSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEV 131 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh
Q 019043 199 LSLVTNAQGEVMERLL 214 (347)
Q Consensus 199 e~~~~~A~e~ll~dLL 214 (347)
..+...+.+.++.+++
T Consensus 132 ~~a~~elk~eii~~~~ 147 (167)
T PRK08475 132 RKMEREVVEEVLNELF 147 (167)
T ss_pred HHHHHHHHHHHHHHHH
No 232
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=48.56 E-value=2.1e+02 Score=25.94 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=31.9
Q ss_pred HHHHHHhHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 019043 162 LERKVVNLSEELSAERAR-ILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk-~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErA 223 (347)
.++++.+...+..++... ..++.|+++--|+.++.+...+.. .=++++.-++|+|.+-
T Consensus 67 ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~----~~~~~~~~~~~~~~~~ 125 (155)
T PRK06569 67 YNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSIN----QNIEDINLAAKQFRTN 125 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 344444445555554444 556666666666666655444333 3355666677777654
No 233
>PRK14148 heat shock protein GrpE; Provisional
Probab=48.44 E-value=2.2e+02 Score=26.65 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
+..++.++..++++..+++.++.-+.++ +.+--.|...|.++.++......
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae---~eN~rKR~~rE~e~~~~~a~~~~ 92 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAE---MENIRKRAERDVSNARKFGIEKF 92 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666665555555444 44444555666666665554433
No 234
>PRK14155 heat shock protein GrpE; Provisional
Probab=48.36 E-value=1.5e+02 Score=28.10 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=24.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
++.++..+++++.+++.++.-+.++ +.+-..|...|.+++++.....+
T Consensus 18 l~~~l~~le~e~~elkd~~lR~~Ae---feN~RKR~~kE~e~~~~~a~~~~ 65 (208)
T PRK14155 18 AAQEIEALKAEVAALKDQALRYAAE---AENTKRRAEREMNDARAYAIQKF 65 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555444 34444555556666665554443
No 235
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.31 E-value=1.6e+02 Score=29.49 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=7.5
Q ss_pred HhCCCeeecCCCC
Q 019043 253 GSLGVVPVETVGN 265 (347)
Q Consensus 253 ~k~GVe~I~~vGe 265 (347)
..+|+..+...|.
T Consensus 285 ~l~g~~~~~~~~~ 297 (312)
T smart00787 285 SLTGWKITKLSGN 297 (312)
T ss_pred HHhCCeeEeccCC
Confidence 3447766665554
No 236
>PRK11546 zraP zinc resistance protein; Provisional
Probab=48.05 E-value=61 Score=29.07 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHhhhhhHHHHHH-------HHHHhHHHHHHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLE-------RKVVNLSEELSAERARILRI 183 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~-------~~l~~L~~el~elkdk~lRl 183 (347)
..+..++..+|.....|++.|. ++|..|.+|+.+|+.++.-.
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666552 34566666666655544433
No 237
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=48.05 E-value=2.8e+02 Score=27.25 Aligned_cols=13 Identities=23% Similarity=0.059 Sum_probs=5.6
Q ss_pred CCCceeEEecccc
Q 019043 284 DEGVIIEEFRKGF 296 (347)
Q Consensus 284 e~gtVveV~qkGY 296 (347)
..|.-+.+.-.||
T Consensus 325 ~~G~~v~v~~~~~ 337 (423)
T TIGR01843 325 HVGQPAEIKFSAF 337 (423)
T ss_pred CCCCceEEEEecC
Confidence 3444444444443
No 238
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=47.82 E-value=1.6e+02 Score=28.03 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=37.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERAR-----ILRISADFDNFRKRTEKERLSLVTNAQ 206 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk-----~lRl~ADfEN~RKRtekE~e~~~~~A~ 206 (347)
...+..+-.++.+|++++..|.+++....+. ..-+....++.|....++-..+.+.+.
T Consensus 36 ~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~ 98 (212)
T COG3599 36 IDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRAS 98 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566677777777777777776664 455555667777776666666665553
No 239
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.58 E-value=1.2e+02 Score=24.42 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN 189 (347)
+..+.++|..+...+.-+.+|...+++....++.++.++.++.-.|.+
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666555555566655555555555555554444444433
No 240
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=47.55 E-value=1.1e+02 Score=31.29 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCCeeecC--CCCCCCcc
Q 019043 243 SIYKQLVEILGSLGVVPVET--VGNPFDPL 270 (347)
Q Consensus 243 ~I~kqL~~iL~k~GVe~I~~--vGe~FDP~ 270 (347)
+++-.+.+...+.|+..++- +...||++
T Consensus 336 ~l~~~~i~~a~~~G~~~ydf~Gi~~~~~~~ 365 (406)
T PF02388_consen 336 LLQWEAIKYAKEKGIKRYDFGGISGDFDGS 365 (406)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEE-SSSSTTT
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCCCCCCCC
Confidence 45555555677889999985 32347764
No 241
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=47.45 E-value=3.9e+02 Score=33.38 Aligned_cols=54 Identities=26% Similarity=0.451 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
..+.+++..+..++.++.+|+.+|.+++.++....++.+|++.++..+|.-.++
T Consensus 1512 k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er 1565 (1930)
T KOG0161|consen 1512 KRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIER 1565 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 456666667777777888888888888888777778888866666555544333
No 242
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=47.42 E-value=2.1e+02 Score=25.54 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=41.3
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH-------HH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAER-------AR-ILRISADFDNFRKRTEKERLSLVTNAQGEVMERLL 214 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elk-------dk-~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLL 214 (347)
.+...|...|.+.+.-..+.+..+...++++.+.+ +. ..++....++++++.+.+...++..+.+.+-...=
T Consensus 37 ~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~ 116 (161)
T COG0711 37 ERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKE 116 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333333333333 22 22344555777777777777777777766665554
Q ss_pred hhhhhHHH
Q 019043 215 QVLDNFER 222 (347)
Q Consensus 215 pVlDnLEr 222 (347)
.+++.|..
T Consensus 117 ~a~~~l~~ 124 (161)
T COG0711 117 RALEELRA 124 (161)
T ss_pred HHHHHHHH
Confidence 44444443
No 243
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=47.08 E-value=2.7e+02 Score=26.74 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=19.4
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
++..+......-...+..+..++.+++-++..+.++++.++
T Consensus 196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~ 236 (312)
T PF00038_consen 196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLR 236 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccc
Confidence 33333333333344444455555555555555555555444
No 244
>PRK14139 heat shock protein GrpE; Provisional
Probab=46.94 E-value=2.4e+02 Score=26.19 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
+..++.++..+++++.+++.++.-+.++.+ +-..|...|.++.++.....
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~Aefe---N~rKR~~kE~e~~~~~a~~~ 83 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETE---NVRRRAQEDVAKAHKFAIES 83 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666677666655554444 44455555555555554443
No 245
>PRK14147 heat shock protein GrpE; Provisional
Probab=46.60 E-value=1.9e+02 Score=26.46 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=23.2
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
++..+++++.+++.++.-+.+ ++.+.-.|...|.++.++......
T Consensus 26 ~l~~l~~e~~elkd~~lR~~A---d~eN~rkR~~kE~e~~~~~a~~~~ 70 (172)
T PRK14147 26 EVESLRSEIALVKADALRERA---DLENQRKRIARDVEQARKFANEKL 70 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544443 344445566666666666554433
No 246
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=46.52 E-value=3.6e+02 Score=31.55 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=10.6
Q ss_pred HhhhhHHHHHHHHHHHHH
Q 019043 235 EKINNSYQSIYKQLVEIL 252 (347)
Q Consensus 235 ~~l~eg~~~I~kqL~~iL 252 (347)
..+.+..+|+..||...=
T Consensus 274 ~vLleekeMLeeQLq~lr 291 (1195)
T KOG4643|consen 274 RVLLEEKEMLEEQLQKLR 291 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666665543
No 247
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.47 E-value=5.9e+02 Score=30.48 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhCCCeeecCCCCCCCccc
Q 019043 240 SYQSIYKQLVEILGSLGVVPVETVGNPFDPLL 271 (347)
Q Consensus 240 g~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~l 271 (347)
.+......+...-...|+....+.+..|.+..
T Consensus 383 ~l~~~~~el~~~a~~~~~~~~~~~~~~~~~~~ 414 (1353)
T TIGR02680 383 ELRAAREQLARAAERAGLSPAHTAEPDAALAA 414 (1353)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 34445555555556666655444444444433
No 248
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.39 E-value=84 Score=26.39 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=21.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
..++++++..+++++++++.+..++..+.++++.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455666666666666666666666666666653
No 249
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=46.25 E-value=2.4e+02 Score=29.58 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=10.9
Q ss_pred HHHHHHhhhhhhHHHHHhhh
Q 019043 208 EVMERLLQVLDNFERAKTQI 227 (347)
Q Consensus 208 ~ll~dLLpVlDnLErAl~~~ 227 (347)
.+...++.-+|.|...+..+
T Consensus 154 ~l~~~~~~~i~~l~~~~~~l 173 (420)
T COG4942 154 ALNPARAERIDALKATLKQL 173 (420)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 34455556666666554444
No 250
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.76 E-value=1.8e+02 Score=30.94 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=24.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
.+.-+-.++++++. ++..+..+.+.++.+..|+++.-.|+..|++.....
T Consensus 60 TlrTlva~~k~~r~-------~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 60 TLRTLVAEVKELRK-------RLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 44444444444444 444444444455444555555555555555544433
No 251
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=45.69 E-value=2.1e+02 Score=25.15 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=14.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
|..|....+.+..|++++...+..++.-.+.+..+.+...
T Consensus 33 E~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~ 72 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAK 72 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444343333333333333333333333
No 252
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=45.68 E-value=1.5e+02 Score=23.54 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=15.2
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERAR 179 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk 179 (347)
.+..+..|..+|..++...++++..+++.
T Consensus 4 dv~~l~~EkeeL~~klk~~qeel~~~k~~ 32 (69)
T PF08912_consen 4 DVANLAKEKEELNNKLKKQQEELQKLKEE 32 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666665555555444443
No 253
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=45.41 E-value=3e+02 Score=26.80 Aligned_cols=47 Identities=9% Similarity=0.163 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~ 203 (347)
.+..+++.++.....++.+.++.|.....+++.++.+...+...+-.
T Consensus 168 ~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd 214 (258)
T cd07680 168 EQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFE 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44556666666666667777777777777777776666666544433
No 254
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=45.18 E-value=2.5e+02 Score=25.82 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
|..+|+.+|...++||..|+.-+.......-++||++
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445566666666666666555555555555666554
No 255
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=45.07 E-value=2.4e+02 Score=25.67 Aligned_cols=49 Identities=16% Similarity=0.455 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A 205 (347)
+....+.+-|..|..++...+++..+...++.+||.++.+....+...+
T Consensus 103 ~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~ 151 (184)
T PF05791_consen 103 KDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDV 151 (184)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445666777788888888888888888888888888888766665544
No 256
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.93 E-value=1.1e+02 Score=29.73 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCCeeecCCCC
Q 019043 244 IYKQLVEILGSLGVVPVETVGN 265 (347)
Q Consensus 244 I~kqL~~iL~k~GVe~I~~vGe 265 (347)
-.+++.+-|.-.|-+.|..-|.
T Consensus 140 dl~~viNeL~~sGAEaIsIn~~ 161 (247)
T COG3879 140 DLQAVINELNISGAEAISINGQ 161 (247)
T ss_pred HHHHHHHHHHhccchheeECCE
Confidence 3467788888899888876665
No 257
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=44.93 E-value=2e+02 Score=24.71 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=14.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
.|+..+..|..+......++.-++|.+...++-++
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443333
No 258
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.75 E-value=89 Score=30.75 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=29.7
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
..+..+..++..++..+..+..+-..+..++.|..+|+|--+||++
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666666666666666677777777777776666664
No 259
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=44.63 E-value=1e+02 Score=28.52 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
.+++.++..++.++..| +.++..++.++++...+..++++|.+-
T Consensus 123 ~eL~~eI~~L~~~i~~l----e~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRL----EEIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333 344455566777777777777777654
No 260
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.39 E-value=1.2e+02 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 019043 159 KIDLERKVVNLSEELSAERARILRISA 185 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~A 185 (347)
+..+++++..+-+++.++|..+..+..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~E 36 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLE 36 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 261
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=44.34 E-value=84 Score=32.21 Aligned_cols=6 Identities=17% Similarity=0.645 Sum_probs=2.6
Q ss_pred HHHhCC
Q 019043 251 ILGSLG 256 (347)
Q Consensus 251 iL~k~G 256 (347)
++.++|
T Consensus 170 ~~~~~G 175 (398)
T PTZ00454 170 LYEQIG 175 (398)
T ss_pred HHHhcC
Confidence 344444
No 262
>PRK14145 heat shock protein GrpE; Provisional
Probab=44.15 E-value=2.8e+02 Score=26.09 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=31.1
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
..+..++.++..+++++.++..++.-+.++. .+...|...|.+++++......
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEf---eN~rkR~~kE~e~~~~~a~e~~ 97 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEF---ENYRKRTEKEKSEMVEYGKEQV 97 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666667777777766666555444 4445555666666665554433
No 263
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=44.15 E-value=3.7e+02 Score=27.50 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=13.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
.+..+.+|-.++.+.+.+-.+..+-..++-
T Consensus 62 a~~~i~~L~~~i~~ik~kA~~sE~~V~~it 91 (383)
T PF04100_consen 62 AQEAIQELFEKISEIKSKAEESEQMVQEIT 91 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 264
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=44.06 E-value=1.4e+02 Score=28.37 Aligned_cols=12 Identities=8% Similarity=0.146 Sum_probs=5.6
Q ss_pred cccCCCccCCCc
Q 019043 63 IKFSPLASTGET 74 (347)
Q Consensus 63 ~~~~~~~~~g~t 74 (347)
+..-.|.+.|+.
T Consensus 72 y~r~~FgrYGa~ 83 (225)
T KOG4848|consen 72 YRRERFGRYGAK 83 (225)
T ss_pred HHHHHHHhhccc
Confidence 333445555543
No 265
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.78 E-value=3.1e+02 Score=26.56 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=6.1
Q ss_pred HHHHHhhhhhhHHHH
Q 019043 209 VMERLLQVLDNFERA 223 (347)
Q Consensus 209 ll~dLLpVlDnLErA 223 (347)
|-.+++-=++.|++.
T Consensus 193 f~~~~~~E~~~Fe~~ 207 (240)
T cd07667 193 FNADLKADMERWQNN 207 (240)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334444443
No 266
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=43.69 E-value=2.2e+02 Score=25.33 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=25.2
Q ss_pred CccCCchhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHH
Q 019043 118 AEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKI 160 (347)
Q Consensus 118 ~~~~~~~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~ 160 (347)
..-.||..+..+|..|.+ .......+..+|...=+++.
T Consensus 32 d~~~pP~el~~iLe~y~~-----~~~d~~~lr~~L~~YLD~IK 69 (132)
T PF09432_consen 32 DDWNPPKELQSILEKYNT-----PSTDTEELRAQLDRYLDDIK 69 (132)
T ss_pred cCCCCCHHHHHHHHHHcC-----CCccHHHHHHHHHHHHHHHH
Confidence 345788999999999976 34455566666655544443
No 267
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=43.59 E-value=2.5e+02 Score=32.02 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhhhHHHHH------HHHHHhHHHHHHHHHHHHHHHHhH------------------------HHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDL------ERKVVNLSEELSAERARILRISAD------------------------FDNFRKRT 194 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L------~~~l~~L~~el~elkdk~lRl~AD------------------------fEN~RKRt 194 (347)
+...+..|...++.+.+- .++|+.|-+++.+.-+.|+|.+|+ ++++-.|+
T Consensus 498 ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~i 577 (851)
T TIGR02302 498 LSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQI 577 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHH
Confidence 334444444444443322 447788888888888888887775 33344444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 019043 195 EKERLSLVTNAQGEVMERLLQVLDNFERA 223 (347)
Q Consensus 195 ekE~e~~~~~A~e~ll~dLLpVlDnLErA 223 (347)
+.-.++-...+.+.++.+|=.+++||..+
T Consensus 578 eela~~G~~~~A~qlL~qlq~mmenlq~~ 606 (851)
T TIGR02302 578 ENLARSGDRDQAKQLLSQLQQMMNNLQMG 606 (851)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444555677888888888888754
No 268
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.51 E-value=1.4e+02 Score=31.88 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 167 VNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 167 ~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
.-|+.|-.....+++-++.||+.+.|.-..|++.++..
T Consensus 481 dlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~ 518 (527)
T PF15066_consen 481 DLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSR 518 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33555655666778899999999998888888887654
No 269
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=43.44 E-value=1e+02 Score=33.84 Aligned_cols=46 Identities=11% Similarity=0.270 Sum_probs=22.7
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
.++.|+|.+-++++.++.++..++++|++.+...+-.+.++.-+.+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 3455555555555555555555555555554444444444443333
No 270
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.25 E-value=3.4e+02 Score=28.20 Aligned_cols=41 Identities=7% Similarity=0.121 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHh
Q 019043 184 SADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (347)
Q Consensus 184 ~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~ 225 (347)
+.|+.|+|.-+. ..++-..|-...-++++-.+++++.-=+.
T Consensus 275 q~Ei~~LKqeLa-~~EEK~~Yqs~eRaRdi~E~~Es~qtRis 315 (395)
T PF10267_consen 275 QNEIYNLKQELA-SMEEKMAYQSYERARDIWEVMESCQTRIS 315 (395)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555554331 12333444455667777777777655443
No 271
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=43.20 E-value=1.9e+02 Score=23.88 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=30.9
Q ss_pred HHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 133 YKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 133 ~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
....+...+.....++..++.....+..+.-+.+..+... .+-+..+..+...|..|++-
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~ 124 (181)
T PF12729_consen 65 LRRYLLATDPEERQEIEKEIDEARAEIDEALEEYEKLILS-PEEKQLLEEFKEAWKAYRKL 124 (181)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHH
Confidence 3444556666677777666666666555555555443111 11233445555555555433
No 272
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.15 E-value=6.3e+02 Score=29.91 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=24.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
.+.+++.++..++.++..+..++..+..+...+++++.+++
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq 863 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666665555555555555555555553
No 273
>PHA01750 hypothetical protein
Probab=42.64 E-value=84 Score=25.02 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=14.7
Q ss_pred hHHHH-HHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 144 KAAEI-EALLKSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 144 k~~ei-E~~l~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
.+.+| ..+|..+..|+.+++.++.++++++.++|
T Consensus 35 AvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 35 AVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444 34444444444444444444444444443
No 274
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=42.50 E-value=1.9e+02 Score=27.89 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=48.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHH-
Q 019043 164 RKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQ- 242 (347)
Q Consensus 164 ~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~- 242 (347)
..|..|+.+|.+.+..|-+++.+|-. .+..+.+ -+.+.|..-=|+++...++...-..-......|-....
T Consensus 21 d~IN~lE~~L~~ar~~fr~~l~e~~~-------kL~~~~k-kLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~ 92 (239)
T PF05276_consen 21 DEINRLENELDEARATFRRLLSESTK-------KLNELAK-KLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSM 92 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666532 1111111 12345666667777777765432110000111111111
Q ss_pred -HHHHHHHHHHHhCCCeeecCCCCCCCccccceeee
Q 019043 243 -SIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMR 277 (347)
Q Consensus 243 -~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~ 277 (347)
...+..+.+++. |+. ...|..|||.|++.+.+
T Consensus 93 h~aAKe~v~laEq-~l~--~~~~~~~D~~wqEmLn~ 125 (239)
T PF05276_consen 93 HAAAKEMVALAEQ-SLM--SDSNWTFDPAWQEMLNH 125 (239)
T ss_pred HHHHHHHHHHHHH-HHh--cCCcccccHHHHHHHHH
Confidence 123444444432 211 12335799999987654
No 275
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=42.37 E-value=85 Score=26.15 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=11.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 165 KVVNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
++..++..++.+..+..++...+.+.++
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444333
No 276
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=42.25 E-value=88 Score=24.94 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=10.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSA 175 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~e 175 (347)
+..+..++.++..|+.++..+.+++.+
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 277
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=42.20 E-value=4.4e+02 Score=27.83 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=45.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLD 218 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlD 218 (347)
...++..+....+++..+.+...++..+|+|..+++..+.......-.+..++.|+-++-
T Consensus 79 ~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~ 138 (448)
T COG1322 79 KARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLR 138 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334455555566666778888889999999999999888888777777777777775543
No 278
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=42.04 E-value=87 Score=26.33 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRI 183 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl 183 (347)
.+++.-+|+.+++|..-|..++.++.++.+.+...+.+.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999988888888888887766664444433
No 279
>PRK14140 heat shock protein GrpE; Provisional
Probab=41.98 E-value=3e+02 Score=25.76 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=22.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
+.++..+++++.+++.++.-+.++ +.+--.|...|.++.++.....
T Consensus 43 ~~~i~~l~~ei~elkd~~lR~~Ae---~eN~rkR~~rE~~~~~~~a~~~ 88 (191)
T PRK14140 43 QAKIAELEAKLDELEERYLRLQAD---FENYKRRIQKENEAAEKYRAQS 88 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444444 3444455555555555554433
No 280
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=41.96 E-value=1.2e+02 Score=29.24 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=18.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
+.++..++.....++.++..++.++...+.++..+..+++.++
T Consensus 93 ~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~ 135 (334)
T TIGR00998 93 VRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRV 135 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333333333333444444444444444444444444444444
No 281
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=41.76 E-value=4.5e+02 Score=27.82 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHhhhhhHHH
Q 019043 142 DTKAAEIEALLKSFEDEKI 160 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~ 160 (347)
..-+..+...+..+..++.
T Consensus 250 ~~~i~~a~~~i~~L~~~l~ 268 (582)
T PF09731_consen 250 NSLIAHAKERIDALQKELA 268 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 282
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=41.64 E-value=2.2e+02 Score=24.76 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 153 KSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 153 ~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+..+++.......+..+...+..+...-+...+-++.+|+|-
T Consensus 40 ~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~ 81 (141)
T PF13874_consen 40 EAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRH 81 (141)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444555555555555555444455555555555554
No 283
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.49 E-value=6.4e+02 Score=29.50 Aligned_cols=104 Identities=20% Similarity=0.258 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHh------cCCChhhHHHHHH---HHhhhhhHHHHHHHHHHhHHHHH----------HHHHHHHHHHHhH
Q 019043 126 IMETLQSYKEAL------ASNDDTKAAEIEA---LLKSFEDEKIDLERKVVNLSEEL----------SAERARILRISAD 186 (347)
Q Consensus 126 ~~~~l~~~~ea~------~~~~e~k~~eiE~---~l~~~e~E~~~L~~~l~~L~~el----------~elkdk~lRl~AD 186 (347)
+.+-+|-..|.+ .+.|+.|+.+++. ++.++++=+..+.+++..|++++ .+.+++|.+..||
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555 3778888888864 23344444444444555554443 4678889999988
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhh
Q 019043 187 FDNFRK--RTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKV 229 (347)
Q Consensus 187 fEN~RK--RtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~ 229 (347)
...--. -+.||..+-+...++.=+..+-.=+|.|+.-++-++.
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKa 353 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKA 353 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 854332 3467777777777777777777778887776665553
No 284
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=41.39 E-value=3.9e+02 Score=26.99 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=8.4
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 019043 165 KVVNLSEELSAERARILRIS 184 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ 184 (347)
+...|..++..++....+++
T Consensus 49 ~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 49 RCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 285
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=40.96 E-value=3e+02 Score=25.57 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=13.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERA 178 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkd 178 (347)
+..+..+..|...|.+-|..+..+..+++.
T Consensus 47 ~k~m~ei~~eN~~L~epL~~a~~e~~eL~k 76 (201)
T PF13851_consen 47 EKLMAEISQENKRLSEPLKKAEEEVEELRK 76 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 286
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=40.95 E-value=82 Score=28.05 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
++|++-..+..++..|..++..+.-|++-++.+|.+++
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555666655543
No 287
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=40.76 E-value=3.2e+02 Score=25.75 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=28.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
++..++..|...+.....++.++..|+.++....+.+..+.+-.+.+
T Consensus 121 kl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 121 KLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 55555666666666666666666666666666666665555444433
No 288
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.75 E-value=1e+02 Score=29.70 Aligned_cols=55 Identities=9% Similarity=0.264 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
+..+..+|..+..-..-..+|..+|..|+.++.+|+.++-+..-+++.+++|-..
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3556666666665555556778888888888888888888888888887776543
No 289
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=40.58 E-value=3.1e+02 Score=25.64 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHh-CCCeee
Q 019043 240 SYQSIYKQLVEILGS-LGVVPV 260 (347)
Q Consensus 240 g~~~I~kqL~~iL~k-~GVe~I 260 (347)
.+.....++..-|.. +.|+.+
T Consensus 141 ~l~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 141 QLARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHHHHHHHHHHHHhCceee
Confidence 344444444444433 245544
No 290
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=40.06 E-value=3.3e+02 Score=27.48 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 125 ~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
.|+..+..|+.-+..+++....-++..++..+ .+ +++-.--.-+.+-|+++.|..+-+
T Consensus 2 ~~k~~~~~~~~~i~k~nee~~~~~~~~~k~~e----~~-qkl~sr~~~~~ekke~i~r~n~k~ 59 (359)
T KOG4398|consen 2 SCKMRIEQLKQTICKGNEEMEKNSEGLLKTKE----KN-QKLYSRAQRHQEKKEKIQRHNRKL 59 (359)
T ss_pred chhHHHHHHHHHHhcCcHHHHHhHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHhhhhc
Confidence 46778899999999999887777777666544 22 233333334556677777776644
No 291
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=39.96 E-value=1.5e+02 Score=29.24 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
.+.++.....++.....+++.+.+.+.+..+++.+++.|+..
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e 232 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITE 232 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555555666777777777777777777777777777643
No 292
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=39.77 E-value=8.5e+02 Score=30.65 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhhhhHHHHHhh
Q 019043 206 QGEVMERLLQVLDNFERAKTQ 226 (347)
Q Consensus 206 ~e~ll~dLLpVlDnLErAl~~ 226 (347)
.+..+.+|...+...+.-..+
T Consensus 990 lEe~~~~l~~~l~~~eek~~~ 1010 (1930)
T KOG0161|consen 990 LEERIRELQDDLQAEEEKAKS 1010 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444443333
No 293
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=39.71 E-value=1.5e+02 Score=33.63 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 019043 184 SADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (347)
Q Consensus 184 ~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl 224 (347)
..|++++-.|+++-.++-...+...++.+|=.+++||..+.
T Consensus 537 ~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~~~ 577 (820)
T PF13779_consen 537 QQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQNAQ 577 (820)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccC
Confidence 44556666666666666666666777777777777776553
No 294
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=39.50 E-value=15 Score=30.76 Aligned_cols=10 Identities=30% Similarity=0.611 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 019043 188 DNFRKRTEKE 197 (347)
Q Consensus 188 EN~RKRtekE 197 (347)
++++....++
T Consensus 77 ~~~~~~A~~e 86 (131)
T PF05103_consen 77 DEIKAEAEEE 86 (131)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 295
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=39.40 E-value=5.4e+02 Score=28.01 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 153 KSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 153 ~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
..++.+...|+.++..|+.++...+++...+....+
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333
No 296
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=39.36 E-value=1.1e+02 Score=33.70 Aligned_cols=50 Identities=16% Similarity=0.293 Sum_probs=37.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
+-.++++++..+..++..+.++|...+.++....-.+.|...++.|+|+|
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777778888888877766
No 297
>PF13514 AAA_27: AAA domain
Probab=39.34 E-value=6.7e+02 Score=29.09 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhCC
Q 019043 242 QSIYKQLVEILGSLG 256 (347)
Q Consensus 242 ~~I~kqL~~iL~k~G 256 (347)
.....++...+..+|
T Consensus 313 ~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 313 AELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHhcC
Confidence 344567777888888
No 298
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=39.02 E-value=2.5e+02 Score=24.01 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=13.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
.+-++|.+|+.+.+..-+.+..+.--+.++-+|+
T Consensus 64 ~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 64 KQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444443
No 299
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=38.86 E-value=2.5e+02 Score=24.06 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=18.7
Q ss_pred HHHHHhcCCChhhHHHHHHHHhhhhh
Q 019043 132 SYKEALASNDDTKAAEIEALLKSFED 157 (347)
Q Consensus 132 ~~~ea~~~~~e~k~~eiE~~l~~~e~ 157 (347)
.+.-|=..||..++..++..|..++.
T Consensus 32 qI~~Ak~~gN~~rv~GLe~AL~~v~~ 57 (115)
T PF06476_consen 32 QIEYAKAHGNQHRVAGLEKALEEVKA 57 (115)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34445568888888888888887654
No 300
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.83 E-value=4.1e+02 Score=27.39 Aligned_cols=67 Identities=10% Similarity=0.205 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 130 LQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 130 l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
+.+|++.+..--++++..+-+++..+..-.++|..-..+|.++...++.+..-++++.+=++++.+.
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3445555543334444444444444444444444444555555566666666666666666655544
No 301
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=38.71 E-value=2.8e+02 Score=25.79 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=35.6
Q ss_pred CchhHHHHHHHHHHHhcCCChh--------hHHHHHHHHhhhhhHHHHHHHHHHh-------HHHHHHHHHHHHHHHHhH
Q 019043 122 PTSFIMETLQSYKEALASNDDT--------KAAEIEALLKSFEDEKIDLERKVVN-------LSEELSAERARILRISAD 186 (347)
Q Consensus 122 ~~~~~~~~l~~~~ea~~~~~e~--------k~~eiE~~l~~~e~E~~~L~~~l~~-------L~~el~elkdk~lRl~AD 186 (347)
+.+.+...++...+.=.+|... ++-.+......+.++...+++++.. ++.++.+++.+++.++-.
T Consensus 67 ~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 67 SRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred cHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666677753 2333333333344444445544443 355555565555555554
Q ss_pred HHHH
Q 019043 187 FDNF 190 (347)
Q Consensus 187 fEN~ 190 (347)
...+
T Consensus 147 ~~~~ 150 (190)
T PF05266_consen 147 AAKL 150 (190)
T ss_pred HHHH
Confidence 3333
No 302
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=38.44 E-value=1e+02 Score=26.51 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhh----hHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFE----DEKIDLERKVVNLSEELSAERARI 180 (347)
Q Consensus 124 ~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e----~E~~~L~~~l~~L~~el~elkdk~ 180 (347)
-.+.++++..+++-..-++.--..|+..+..+. .+...|..++..|+.++..++++.
T Consensus 46 ~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 46 RFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777664443222222222222222222 223445555555555555554443
No 303
>smart00338 BRLZ basic region leucin zipper.
Probab=38.22 E-value=1.4e+02 Score=22.37 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=18.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
..|+.++..|+.+..+|..++..+..++..++.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555543
No 304
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=38.18 E-value=3e+02 Score=24.77 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=14.2
Q ss_pred hhHHHHHHHHhhhh-hHHHHHHHHHHhHHHHHHH
Q 019043 143 TKAAEIEALLKSFE-DEKIDLERKVVNLSEELSA 175 (347)
Q Consensus 143 ~k~~eiE~~l~~~e-~E~~~L~~~l~~L~~el~e 175 (347)
+.++++..++...+ .+...+..+...|+.+++.
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~ 91 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEK 91 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554332 2333444444444444433
No 305
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.97 E-value=2.8e+02 Score=27.93 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQG 207 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e 207 (347)
+++.....++..|..++..-.+.+.|.+-++..+..++-.-....+.++.+
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~E 256 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAE 256 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444455556666666666666666666666666665555544455555544
No 306
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=37.70 E-value=80 Score=29.44 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHHHHHHH--hHHHHHH-HHHHHHHHHHHHHH
Q 019043 175 AERARILRIS--ADFDNFR-KRTEKERLSLVTNA 205 (347)
Q Consensus 175 elkdk~lRl~--ADfEN~R-KRtekE~e~~~~~A 205 (347)
-+++-|+|++ +|.+.|+ .|.+.+.+++.+.|
T Consensus 69 Nl~Es~LRm~~~~d~ney~v~r~E~~fqeLn~ka 102 (207)
T KOG4025|consen 69 NLQESYLRMHDTSDTNEYIVSRYEQDFQELNKKA 102 (207)
T ss_pred chHHHHHHhhcccchhhHhhcCCCccHHHHHHHH
Confidence 3566777777 4555554 45555555554444
No 307
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=37.61 E-value=1.3e+02 Score=25.73 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=14.6
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
..+..+++.+..+.+.+..+.+++..+...+.++.
T Consensus 101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 101 KRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433
No 308
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.47 E-value=1.7e+02 Score=31.84 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=36.4
Q ss_pred HhhhhhHHHHH---HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019043 152 LKSFEDEKIDL---ERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (347)
Q Consensus 152 l~~~e~E~~~L---~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~ 203 (347)
...+.+|...| ...+..|+++++.++.+|..+....-..|++..+..+....
T Consensus 327 ~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~ 381 (557)
T COG0497 327 LDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVT 381 (557)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433 33567788888888899999999999999888877655433
No 309
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=37.44 E-value=6e+02 Score=28.27 Aligned_cols=58 Identities=9% Similarity=0.233 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Q 019043 167 VNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQI 227 (347)
Q Consensus 167 ~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~ 227 (347)
+.|+.....+.++|..+.+|++.+|+-+...+=.+ ....+..++--.+|.+++.+..+
T Consensus 238 e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~---vFr~l~~q~~~m~esver~~~kl 295 (683)
T PF08580_consen 238 EELEDRYERLEKKWKKLEKEAESLKKELIEDRWNI---VFRNLGRQAQKMCESVERSLSKL 295 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556677777778888888877664443211 12334445555555556554443
No 310
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.79 E-value=1.8e+02 Score=24.90 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=26.1
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
++.+++.++..+-.++..|++.+..+-+|...|+-....++.-+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667776666666666666666666665544433333333
No 311
>PRK00846 hypothetical protein; Provisional
Probab=36.74 E-value=2.3e+02 Score=22.92 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
++..+.+|+.+++=.+.-+.++++-+.+.+..++.+++++..-.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677766666777777777777777777766655433
No 312
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.53 E-value=4.4e+02 Score=26.28 Aligned_cols=46 Identities=11% Similarity=0.330 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 019043 171 EELSAERARILRISADF-DNFRKRTEKERLSLVT-NAQGEVMERLLQV 216 (347)
Q Consensus 171 ~el~elkdk~lRl~ADf-EN~RKRtekE~e~~~~-~A~e~ll~dLLpV 216 (347)
+.+.++-..|.+.+.++ ++|+.|.++...-... .+....+.+++..
T Consensus 130 kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~ 177 (297)
T KOG0810|consen 130 KKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIES 177 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHC
Confidence 33444444555555554 5566666665544444 4445555555554
No 313
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=36.51 E-value=3.1e+02 Score=24.46 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=23.2
Q ss_pred HHHhhhhhhHHHHHhhhhhccc--ch--------HhhhhHHHHHHHHHHHHHHh
Q 019043 211 ERLLQVLDNFERAKTQIKVQTE--GE--------EKINNSYQSIYKQLVEILGS 254 (347)
Q Consensus 211 ~dLLpVlDnLErAl~~~~~e~e--~~--------~~l~eg~~~I~kqL~~iL~k 254 (347)
.++++++.+|+..+..+..... +. .-+..++.+|..-|...|+.
T Consensus 95 ~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~~~~l~~ 148 (157)
T PF04136_consen 95 DSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKNYVVNTLRS 148 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777776643211 00 11223455566666666654
No 314
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.33 E-value=2.3e+02 Score=22.86 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=15.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e 199 (347)
++.++..--.|+..+++++..+-.-...+|..++.|+.
T Consensus 30 ~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~ 67 (79)
T PF08581_consen 30 YEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIA 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444433
No 315
>PRK06443 chorismate mutase; Validated
Probab=36.29 E-value=3.6e+02 Score=25.13 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCCCeeecC-CCCCCCccccceeee-ecCCCCCCCceeEEecccccc
Q 019043 241 YQSIYKQLVEILGSLGVVPVET-VGNPFDPLLHEAIMR-EDSTEFDEGVIIEEFRKGFKL 298 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~GVe~I~~-vGe~FDP~lHEAV~~-~es~e~e~gtVveV~qkGY~l 298 (347)
|+.....|-.+|..-|.+.+-. +.+.|-.-+.-+-.+ +......+++|+.+ ..||-.
T Consensus 92 y~~~~~sl~~~~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 150 (177)
T PRK06443 92 YDSLILSLGLILSRPGIEIYIEDNPDSIEEGCSKAGGHVVIGLPDKDDHIVDI-NSGFPV 150 (177)
T ss_pred hHHHHHHHHHHHhcCCcEEEeccCchHHHHhhhhcCCeEecCCCCCCCeeEec-CCCCcc
Confidence 8999999999999999988643 444444444333333 23445667787764 456543
No 316
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=36.27 E-value=2.7e+02 Score=23.75 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHhhhhhh-HHHHHhhhhhcccchHhhhhHHHHHHHHH
Q 019043 172 ELSAERARILRISADFDNFRKRTEKER-LSLVTNAQ-GEVMERLLQVLDN-FERAKTQIKVQTEGEEKINNSYQSIYKQL 248 (347)
Q Consensus 172 el~elkdk~lRl~ADfEN~RKRtekE~-e~~~~~A~-e~ll~dLLpVlDn-LErAl~~~~~e~e~~~~l~eg~~~I~kqL 248 (347)
++.+|..+|.++..++..|+.- +.++ +.+...|. .+-.+.-|-.+|+ |.-.+..++.+ ...+...+..-+|||
T Consensus 10 ~l~DL~~rYs~L~s~lkKfkq~-q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~~qE---~~k~m~~i~~~FKQL 85 (107)
T PRK15365 10 EYRDLEQSYMQLNHCLKKFHQI-RAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQE---AEKDLKKIVSLFKQL 85 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCcchhhHHhHH---HHHHHHHHHHHHHHH
Confidence 5667777788877777766532 2222 33333321 1223344444443 22333222221 123334445567888
Q ss_pred HHHHHhCC
Q 019043 249 VEILGSLG 256 (347)
Q Consensus 249 ~~iL~k~G 256 (347)
..-|+..|
T Consensus 86 Et~LKnln 93 (107)
T PRK15365 86 EVRLKQLN 93 (107)
T ss_pred HHHHHhcC
Confidence 88888776
No 317
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=36.26 E-value=78 Score=31.63 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~ 180 (347)
..++..|+..+....+.+..|+.++.+|++++...+.+.
T Consensus 137 ~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kki 175 (308)
T PF06717_consen 137 NYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKI 175 (308)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666555566655555555555444443
No 318
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=36.15 E-value=1.3e+02 Score=33.72 Aligned_cols=61 Identities=25% Similarity=0.390 Sum_probs=38.5
Q ss_pred HhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH---HHhHHHHHHHHHHH
Q 019043 136 ALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILR---ISADFDNFRKRTEK 196 (347)
Q Consensus 136 a~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lR---l~ADfEN~RKRtek 196 (347)
|+...-+..+..+.-++..++.....|.++|..|..++.+++++..| +.++++.++.|+..
T Consensus 859 all~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a 922 (961)
T KOG4673|consen 859 ALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAA 922 (961)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333455666666666677777777777777777777766665443 56677777766643
No 319
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.02 E-value=6.1e+02 Score=27.71 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=22.5
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEE 172 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~e 172 (347)
.++.+++.++...++....|..+++.+.+.
T Consensus 454 ~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 454 EEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 588888888888888877777777665544
No 320
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=35.90 E-value=1.2e+02 Score=33.18 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN 189 (347)
-+|+.++--+-.-+..|+...++.-.+|++++.++.+.+.++.++...
T Consensus 328 IakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 328 IAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666643333344444433333334444444444444444444433
No 321
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=35.82 E-value=3.4e+02 Score=24.67 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=8.0
Q ss_pred HHhhhhhhHHHHHhhh
Q 019043 212 RLLQVLDNFERAKTQI 227 (347)
Q Consensus 212 dLLpVlDnLErAl~~~ 227 (347)
.|--=-|.|++-+..+
T Consensus 102 qLr~rRD~LErrl~~l 117 (159)
T PF05384_consen 102 QLRERRDELERRLRNL 117 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555443
No 322
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.59 E-value=3.8e+02 Score=25.18 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=3.7
Q ss_pred HHHhCCCe
Q 019043 251 ILGSLGVV 258 (347)
Q Consensus 251 iL~k~GVe 258 (347)
.++..||+
T Consensus 193 l~eelGIE 200 (201)
T KOG4603|consen 193 LYEELGIE 200 (201)
T ss_pred HHHHhCcC
Confidence 34445543
No 323
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.27 E-value=1.4e+02 Score=24.52 Aligned_cols=35 Identities=3% Similarity=0.215 Sum_probs=20.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
.|+.++..++.+++.+..++..+..++.+++.++.
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666665554
No 324
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=35.15 E-value=1.1e+02 Score=23.17 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHH
Q 019043 133 YKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAE 176 (347)
Q Consensus 133 ~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~el 176 (347)
.-.|+.+||-.++..+-.+-++.-++..++...+..|+.|+..+
T Consensus 7 iq~AiasGDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIakl 50 (53)
T PF08898_consen 7 IQQAIASGDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKL 50 (53)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 34677888877777776655555555566677777777776654
No 325
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.15 E-value=1.1e+02 Score=33.54 Aligned_cols=49 Identities=10% Similarity=0.247 Sum_probs=38.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
....+|.+++.+..+|..+|+++...++++|..+.+.+-|+..++--++
T Consensus 90 sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 4456777888888888888888888888888888888888887765443
No 326
>PRK14157 heat shock protein GrpE; Provisional
Probab=35.13 E-value=4.2e+02 Score=25.55 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
.++.++..+++++.+++.++.-+.++ +.+...|...|.+++++.....
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AE---feNyRKR~~rE~e~~~~~a~~~ 128 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAE---FINYRNRTQKEQDRFRQHGIID 128 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777666555544 4455566666667766665444
No 327
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=35.11 E-value=4.4e+02 Score=25.77 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=5.1
Q ss_pred CCCCceeEEe
Q 019043 283 FDEGVIIEEF 292 (347)
Q Consensus 283 ~e~gtVveV~ 292 (347)
...|.-+.+.
T Consensus 259 v~~Gq~v~i~ 268 (346)
T PRK10476 259 IRVGDCATVY 268 (346)
T ss_pred CCCCCEEEEE
Confidence 4455555553
No 328
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.06 E-value=2.9e+02 Score=24.04 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=38.1
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e 199 (347)
++..+++++.+...=-.+=-+++-+-.+.+.+|.||-..+++-...|++...|=+.
T Consensus 30 k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkr 85 (116)
T KOG0860|consen 30 KLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKR 85 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444333334466677788888889999999999999988776543
No 329
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.82 E-value=3.9e+02 Score=26.15 Aligned_cols=25 Identities=12% Similarity=0.377 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 170 SEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 170 ~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
.+++..+++++.+++++.++|-+++
T Consensus 56 ~~e~~s~Q~~~~~L~~ev~~~~~~~ 80 (247)
T COG3879 56 VKELRSLQKKVNTLAAEVEDLENKL 80 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 330
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.70 E-value=3e+02 Score=32.96 Aligned_cols=61 Identities=16% Similarity=0.055 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
...+.+.+|....+|...+..-+.+.+.+..+.+.+..|+.-...++|.++++...+++..
T Consensus 1416 ~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~L 1476 (1758)
T KOG0994|consen 1416 MAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNL 1476 (1758)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777888888888888888888888887766655543
No 331
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=34.68 E-value=3.3e+02 Score=25.31 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHHHHHhc
Q 019043 121 APTSFIMETLQSYKEALA 138 (347)
Q Consensus 121 ~~~~~~~~~l~~~~ea~~ 138 (347)
.=+..+.++-+.|++.+.
T Consensus 114 ~C~N~C~e~~~~~~~~~~ 131 (176)
T PF12999_consen 114 KCPNTCAELGKEYREELE 131 (176)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 356788888888876654
No 332
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=34.67 E-value=4.2e+02 Score=25.40 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
+.++..+...|..+..+...+.-.+..+..+.+.||++++.+
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 334445555555555555555555556666666666666655
No 333
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.39 E-value=3.2e+02 Score=29.58 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHhcCCChhhHHHH--HHHHhhhhhHHHHHHH
Q 019043 124 SFIMETLQSYKEALASNDDTKAAEI--EALLKSFEDEKIDLER 164 (347)
Q Consensus 124 ~~~~~~l~~~~ea~~~~~e~k~~ei--E~~l~~~e~E~~~L~~ 164 (347)
...+.+-+.|++.-. .-..++.++ +.++.+++..++++++
T Consensus 164 ~~~~~~~~~~k~~~~-~w~~~~~~Lp~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQ-KWKKRKKDLPNKQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence 444444444543322 112333344 3444444444444443
No 334
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=34.31 E-value=2.5e+02 Score=22.67 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=26.9
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
-|..+..|+..+..++...+..-+++.-++..-.+|++.+|+.+
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v 48 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKV 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666553
No 335
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.23 E-value=6.6e+02 Score=27.52 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=9.5
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 019043 181 LRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 181 lRl~ADfEN~RKRtekE~e~ 200 (347)
..++++.+++++.+.+|...
T Consensus 319 ~~l~~qi~~l~~~i~~e~~~ 338 (754)
T TIGR01005 319 VAAKSSLADLDAQIRSELQK 338 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444443
No 336
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.20 E-value=4.3e+02 Score=25.37 Aligned_cols=9 Identities=11% Similarity=0.453 Sum_probs=5.0
Q ss_pred CCCcccchh
Q 019043 71 TGETETTET 79 (347)
Q Consensus 71 ~g~te~~~~ 79 (347)
.|.+.++++
T Consensus 53 ag~~~~p~~ 61 (216)
T KOG4031|consen 53 AGDAPAPQR 61 (216)
T ss_pred cCCCCCcCC
Confidence 456666554
No 337
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=34.18 E-value=2.9e+02 Score=23.48 Aligned_cols=58 Identities=19% Similarity=0.067 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Q 019043 167 VNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQI 227 (347)
Q Consensus 167 ~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~ 227 (347)
..+...+..++.+|.++....++.+++++........+- .+.. ++..++..+..+...
T Consensus 75 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~--~~~~-l~~wl~~~e~~l~~~ 132 (213)
T cd00176 75 EEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFR--DADD-LEQWLEEKEAALASE 132 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHhcCc
Confidence 456677778888888888888888888888776655442 3333 777787777766543
No 338
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=33.89 E-value=2.5e+02 Score=25.26 Aligned_cols=46 Identities=11% Similarity=0.237 Sum_probs=18.0
Q ss_pred cCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 138 ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 138 ~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
...+.....++++ |..++.+..+...++.++-.+.+.+..++..+.
T Consensus 80 P~~~~~~e~Ql~~-i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~l 125 (139)
T KOG1510|consen 80 PGEEGSAEAQLEK-IKKLQEENEEVALELEELVSKGEKLLEQVQSLL 125 (139)
T ss_pred CCcccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443 444444444433333333333333333333333
No 339
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.88 E-value=4.3e+02 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHh-CCCeeecC
Q 019043 237 INNSYQSIYKQLVEILGS-LGVVPVET 262 (347)
Q Consensus 237 l~eg~~~I~kqL~~iL~k-~GVe~I~~ 262 (347)
+...|.-+..++..++.. +|+..+..
T Consensus 86 ~~eey~~Lk~~in~~R~e~lgl~~Lp~ 112 (230)
T PF10146_consen 86 LYEEYKPLKDEINELRKEYLGLEPLPS 112 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 334566667788888888 99988865
No 340
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.83 E-value=8.6e+02 Score=28.73 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=5.9
Q ss_pred HHHHHHHhHHHHHH
Q 019043 178 ARILRISADFDNFR 191 (347)
Q Consensus 178 dk~lRl~ADfEN~R 191 (347)
+.|.+++.+.+.+.
T Consensus 815 ~e~e~l~lE~e~l~ 828 (1174)
T KOG0933|consen 815 NEYERLQLEHEELE 828 (1174)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 341
>COG1422 Predicted membrane protein [Function unknown]
Probab=33.36 E-value=1.9e+02 Score=27.42 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=8.6
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 019043 165 KVVNLSEELSAERARILRIS 184 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ 184 (347)
++.++++..+++++++..++
T Consensus 73 km~~~qk~m~efq~e~~eA~ 92 (201)
T COG1422 73 KMKELQKMMKEFQKEFREAQ 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 342
>PRK14144 heat shock protein GrpE; Provisional
Probab=33.31 E-value=4.2e+02 Score=24.99 Aligned_cols=49 Identities=18% Similarity=0.072 Sum_probs=26.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
.++..+..++.+..+++.++.-+.++ +.+.-.|...|.++.++......
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~Ae---feN~RKR~~kE~e~~~~~a~~~~ 97 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAE---LENVRRRMEREVANAHKYGVEKL 97 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666555555444 44445566666666666554443
No 343
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=33.25 E-value=5.1e+02 Score=26.09 Aligned_cols=104 Identities=12% Similarity=0.204 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhhhhHHHHHh
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN------AQGEVMERLLQVLDNFERAKT 225 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~------A~e~ll~dLLpVlDnLErAl~ 225 (347)
+..+..++.+++.++..+.....+---++..+.+..+++++.+.++...+... ....-...|---++.+..-+.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhcccchHhhhhHHHHHHHHHHHHHHhC
Q 019043 226 QIKVQTEGEEKINNSYQSIYKQLVEILGSL 255 (347)
Q Consensus 226 ~~~~e~e~~~~l~eg~~~I~kqL~~iL~k~ 255 (347)
.++.....-..+...++...+.+...|.+.
T Consensus 336 ~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 336 ELNRQRDEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 344
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=33.09 E-value=3.4e+02 Score=26.65 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=10.2
Q ss_pred CCchhHHHHHHHHHHHh
Q 019043 121 APTSFIMETLQSYKEAL 137 (347)
Q Consensus 121 ~~~~~~~~~l~~~~ea~ 137 (347)
..|+.|.++|+...-..
T Consensus 210 ~sPstL~a~L~~v~~~w 226 (304)
T PF02646_consen 210 VSPSTLMALLRTVAYLW 226 (304)
T ss_pred ecHHHHHHHHHHHHHHH
Confidence 35667777776655443
No 345
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=32.96 E-value=4.3e+02 Score=26.56 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=10.5
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKV 166 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l 166 (347)
+|+.+-+..|..-+.|+.+|+.+|
T Consensus 75 akLkes~~~l~dRetEI~eLksQL 98 (305)
T PF15290_consen 75 AKLKESENRLHDRETEIDELKSQL 98 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444433
No 346
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=32.92 E-value=4.8e+02 Score=25.50 Aligned_cols=50 Identities=8% Similarity=0.174 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A 205 (347)
.++..++..++...+.++...+++|.....+++.++.+...+....-...
T Consensus 167 ~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~ 216 (258)
T cd07681 167 QEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEIC 216 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45777888899999999999999999999999999999988876655443
No 347
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=32.71 E-value=1.2e+02 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHhHHHHH
Q 019043 157 DEKIDLERKVVNLSEEL 173 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el 173 (347)
.++.+.+.++.++++.+
T Consensus 8 ~eieK~k~Kiae~Q~rl 24 (83)
T PF14193_consen 8 AEIEKTKEKIAELQARL 24 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 348
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=32.71 E-value=4.1e+02 Score=24.72 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=22.9
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
.+.++....++..........+...|.+|..+--+++.++..
T Consensus 102 rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~ 143 (236)
T cd07651 102 RKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQ 143 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444555555555555566666666666666666544
No 349
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=32.47 E-value=2.7e+02 Score=22.57 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
.++...|...++|+..|..-+..|..++..+.+--.+++++..+++
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444444444444444444
No 350
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=2.5e+02 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=10.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
+|.+-+..+++.++++-.++..+.+..
T Consensus 105 ~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 105 ELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 351
>PRK14127 cell division protein GpsB; Provisional
Probab=32.44 E-value=1.5e+02 Score=25.47 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=20.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
.|....|..+-.+...+.. ++.+|+++..++.+..+.|+.|..
T Consensus 26 ~EVD~FLd~V~~dye~l~~-------e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQK-------EIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555555544444444 444444444444555555554443
No 352
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.42 E-value=1.4e+02 Score=24.60 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 153 KSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 153 ~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
..++++..++++.+..+.+++..++
T Consensus 97 ~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 97 ETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444433333
No 353
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.39 E-value=2.9e+02 Score=28.44 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=4.3
Q ss_pred HHhhhhhHHHHH
Q 019043 151 LLKSFEDEKIDL 162 (347)
Q Consensus 151 ~l~~~e~E~~~L 162 (347)
++..+.+++.++
T Consensus 342 ~~~~~~~~l~~l 353 (451)
T PF03961_consen 342 ELEELKEELEKL 353 (451)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 354
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=32.33 E-value=2.1e+02 Score=28.62 Aligned_cols=32 Identities=6% Similarity=0.100 Sum_probs=16.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
+.|..++..|++...+||++..++.-|+.-+|
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444444333
No 355
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.29 E-value=4.5e+02 Score=25.06 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=49.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHh
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~ 225 (347)
..|+..|...+.+..++.+.++.+...-..+..+|.+++.+.+.|..+... +...+.+.|.+.+|--.-+++..+.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~----Al~~g~E~LAr~al~~~~~le~~~~ 102 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAEL----ALQAGNEDLAREALEEKQSLEDLAK 102 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 555666667777777777777777777677777777777777776666544 3444556677766666555555433
No 356
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.04 E-value=2.4e+02 Score=29.06 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=14.2
Q ss_pred CCCCceeEEeccccccCCeeeecceEE
Q 019043 283 FDEGVIIEEFRKGFKLGDRLLRPSMVK 309 (347)
Q Consensus 283 ~e~gtVveV~qkGY~l~dRVLRPA~V~ 309 (347)
..+|+++.+-...|.+... +++..+.
T Consensus 420 vypgv~i~i~~~~~~i~~~-~~~~~f~ 445 (451)
T PF03961_consen 420 VYPGVEIHIGNKSYKIKEE-YGNVKFY 445 (451)
T ss_pred EECCEEEEECCEEEEEeee-cCCEEEE
Confidence 4456666666666665554 4444443
No 357
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.95 E-value=4e+02 Score=24.39 Aligned_cols=21 Identities=0% Similarity=-0.029 Sum_probs=9.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 019043 183 ISADFDNFRKRTEKERLSLVT 203 (347)
Q Consensus 183 l~ADfEN~RKRtekE~e~~~~ 203 (347)
+...|+.+.+.+.+|.+....
T Consensus 146 a~~~~e~~~~~~~~E~~rF~~ 166 (200)
T cd07624 146 LQDKLECANADLKADLERWKQ 166 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555445455444433
No 358
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=31.90 E-value=2.6e+02 Score=22.06 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
.++.+++.++.+......+--+++-+-.+.++.+.++-..+...-.+|++.+.+-+..
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~ 60 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRK 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4677777777777776666666666777778888888888888888888877665433
No 359
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=31.80 E-value=1.9e+02 Score=25.96 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=26.9
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
+++.++.|+..+.+.|....+++++|..+ +..|.|+-+|-+
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q----~va~knLv~RN~ 42 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQ----QVAFKNLVQRNR 42 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34566677777777777777777766433 456777766653
No 360
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.37 E-value=3.5e+02 Score=23.45 Aligned_cols=54 Identities=19% Similarity=0.380 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHH---HHHHHHHHhHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAE---RARILRISADFDNFRKRTE 195 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~el---kdk~lRl~ADfEN~RKRte 195 (347)
+..+..+..++..++.+...+.++|..|..+.+++ ..++..+.++++.+..|..
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777788888887777666544 3344455556665555553
No 361
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.32 E-value=3.4e+02 Score=23.35 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN 189 (347)
+..+...+..+..+...|.+..-.++.++.+++.++.....++..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~ 73 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKE 73 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444433333333
No 362
>PLN02939 transferase, transferring glycosyl groups
Probab=31.31 E-value=9e+02 Score=28.24 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=7.2
Q ss_pred CCceeEEeccccc
Q 019043 285 EGVIIEEFRKGFK 297 (347)
Q Consensus 285 ~gtVveV~qkGY~ 297 (347)
.|.-|.|+-++|.
T Consensus 514 ~GhdV~VIlP~Y~ 526 (977)
T PLN02939 514 KGHLVEIVLPKYD 526 (977)
T ss_pred cCCeEEEEeCCCc
Confidence 4555556666654
No 363
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=31.28 E-value=2.5e+02 Score=23.08 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=16.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAE 176 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~el 176 (347)
.++.|.+.|..+..-+..|+++...|..++.+|
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344555555555555555555544444444443
No 364
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=31.26 E-value=4.4e+02 Score=24.54 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=5.4
Q ss_pred hHHHHHHHHHH
Q 019043 125 FIMETLQSYKE 135 (347)
Q Consensus 125 ~~~~~l~~~~e 135 (347)
++.-.|+.+++
T Consensus 28 ~l~q~irem~~ 38 (219)
T TIGR02977 28 MIRLIIQEMED 38 (219)
T ss_pred HHHHHHHHHHH
Confidence 44555554444
No 365
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=31.26 E-value=3.3e+02 Score=23.20 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=7.8
Q ss_pred HHHhHHHHHHHHHHHH
Q 019043 182 RISADFDNFRKRTEKE 197 (347)
Q Consensus 182 Rl~ADfEN~RKRtekE 197 (347)
|+..||-++.+-+++.
T Consensus 68 Rl~~dW~~~~~~~~~~ 83 (134)
T PF08336_consen 68 RLHQDWPKWEKLMEQP 83 (134)
T ss_pred HHHHhhhhHHHHHHHh
Confidence 4555555554444444
No 366
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.25 E-value=1.8e+02 Score=24.87 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=10.3
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
+..++..+..|...+..+++.+..++
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~ 121 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLA 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333
No 367
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=31.15 E-value=2.5e+02 Score=28.01 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhc
Q 019043 126 IMETLQSYKEALA 138 (347)
Q Consensus 126 ~~~~l~~~~ea~~ 138 (347)
|.+.=..|++|+.
T Consensus 86 l~evEekyrkAMv 98 (302)
T PF09738_consen 86 LAEVEEKYRKAMV 98 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333456777776
No 368
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=31.01 E-value=2e+02 Score=28.27 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=27.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~ 202 (347)
...++..+++.++.+.....+...-++..++|+++++..-.
T Consensus 51 ~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf 91 (298)
T PF11262_consen 51 KKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWF 91 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33445555556666666667777777888888887775544
No 369
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=30.95 E-value=4.6e+02 Score=24.72 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=11.9
Q ss_pred HhhhhHHHHHHHHHHHHHH
Q 019043 235 EKINNSYQSIYKQLVEILG 253 (347)
Q Consensus 235 ~~l~eg~~~I~kqL~~iL~ 253 (347)
+.+...+.-.-+.|.+.|+
T Consensus 225 d~Iv~aln~yt~~lQ~~L~ 243 (247)
T PF06705_consen 225 DDIVQALNHYTKALQDGLR 243 (247)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666665
No 370
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=30.88 E-value=3e+02 Score=22.50 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 167 VNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 167 ~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
..++++++.+...-.|+..++++...|.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 4555666666666666666666666665
No 371
>PRK14156 heat shock protein GrpE; Provisional
Probab=30.68 E-value=4.4e+02 Score=24.36 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=20.5
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
+..+++++.+++.++.-+.++ +.+-..|...|.++.++.....
T Consensus 36 l~~l~~e~~elkd~~lR~~AE---feN~rKR~~rE~e~~~~~a~~~ 78 (177)
T PRK14156 36 LELANERADEFENKYLRAHAE---MQNIQRRANEERQQLQRYRSQD 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444454444444433 3333455555666655554433
No 372
>PF14388 DUF4419: Domain of unknown function (DUF4419)
Probab=30.41 E-value=89 Score=30.92 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=31.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHhh
Q 019043 184 SADFDNFRKRTEKERLSLVTNA--QGEVMERLLQVLDNFERAKTQ 226 (347)
Q Consensus 184 ~ADfEN~RKRtekE~e~~~~~A--~e~ll~dLLpVlDnLErAl~~ 226 (347)
..|+++++.|+++=.+ +. ...++..|.||+|.|-.+.+.
T Consensus 144 ~~DW~~L~~r~~~L~e----fg~~~~~w~~~L~pIl~~fi~s~~~ 184 (299)
T PF14388_consen 144 REDWEKLLERLDRLKE----FGEEMEWWASLLRPILDRFIASFDG 184 (299)
T ss_pred HHHHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHHHHHHhcC
Confidence 6888999998877443 54 788999999999999888643
No 373
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.80 E-value=2.1e+02 Score=21.81 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHH
Q 019043 153 KSFEDEKIDLERKVVNLSEELSAERA 178 (347)
Q Consensus 153 ~~~e~E~~~L~~~l~~L~~el~elkd 178 (347)
..+++++..++..+..++.+++++++
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~ 28 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444433
No 374
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.73 E-value=2.1e+02 Score=23.77 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=12.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
.++..+..++..+..|++++..+.+++.+++
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444433333
No 375
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=29.54 E-value=3.1e+02 Score=30.68 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 134 KEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 134 ~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
.|.+......+.+.+...|..++.++..++..+.....+++.+......+..+.+++-.--.+-+.+++.|
T Consensus 18 Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 18 EESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 376
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=29.26 E-value=7.2e+02 Score=26.42 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHH---HhHHHHHHHHHHHHHHHHhHHHHHHH-HHHH-----HHHHHHHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKV---VNLSEELSAERARILRISADFDNFRK-RTEK-----ERLSLVTNAQGEVMER 212 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l---~~L~~el~elkdk~lRl~ADfEN~RK-Rtek-----E~e~~~~~A~e~ll~d 212 (347)
+......+..+...+.++..|..++ ..|+.++......+..+++++.+|+. ++.. .........+..+-.+
T Consensus 210 ~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~E 289 (522)
T PF05701_consen 210 EQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKE 289 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHH
Q ss_pred HhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHhCC
Q 019043 213 LLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLG 256 (347)
Q Consensus 213 LLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k~G 256 (347)
|=.+--+|..+..-+..-......+..-+.-....+..+-.+.+
T Consensus 290 Le~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 290 LEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 377
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.15 E-value=1e+03 Score=28.08 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCee
Q 019043 238 NNSYQSIYKQLVEILGSLGVVP 259 (347)
Q Consensus 238 ~eg~~~I~kqL~~iL~k~GVe~ 259 (347)
..-++.+.+++..-|...||..
T Consensus 749 ~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 749 KEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHhCCCCH
Confidence 3445556677777777777653
No 378
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.00 E-value=4.4e+02 Score=26.00 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=8.9
Q ss_pred hhHHHHHHHHhhhhhHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLE 163 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~ 163 (347)
+..+++|.++.++.+|...|.
T Consensus 90 aRm~eme~~i~dL~een~~L~ 110 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQ 110 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 379
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.87 E-value=6.1e+02 Score=26.57 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=21.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSA 175 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~e 175 (347)
++.+++++|..++.++..++.++..++.+++-
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 103 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKF 103 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777666666665533
No 380
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.84 E-value=4.9e+02 Score=26.18 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=22.9
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
...+..-++.|..++....+++...+++|.+.+++..|-
T Consensus 131 ~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~ 169 (300)
T KOG2629|consen 131 FDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNT 169 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666666666666666666666554
No 381
>COG5570 Uncharacterized small protein [Function unknown]
Probab=28.77 E-value=92 Score=23.72 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 019043 172 ELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 172 el~elkdk~lRl~ADfEN~RKR 193 (347)
.+.++|-+.+|+.-+++.+|-+
T Consensus 34 ~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 34 AIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4667777888888777776643
No 382
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.75 E-value=2.4e+02 Score=27.95 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=5.9
Q ss_pred CCchhHHHHHHHHH
Q 019043 121 APTSFIMETLQSYK 134 (347)
Q Consensus 121 ~~~~~~~~~l~~~~ 134 (347)
.+++.-+..|...+
T Consensus 218 ~~~~dh~V~i~~lk 231 (305)
T KOG3990|consen 218 RDPGDHMVKIQKLK 231 (305)
T ss_pred CCCcchHHHHHHHH
Confidence 34444444444333
No 383
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.74 E-value=1.9e+02 Score=31.75 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSA-------ERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~e-------lkdk~lRl~ADfEN~RKRtekE~ 198 (347)
+|.+++++|+++..++...+.+...+.+...+ ..++-.|+.+|+..|+-|-.|-+
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rll 169 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLL 169 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666555555555444444433 33455666777776666654443
No 384
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.66 E-value=4.1e+02 Score=23.40 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=8.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARIL 181 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~l 181 (347)
..++.+|..++.++...+++|.
T Consensus 148 ~~l~~~i~~~e~~~~~~~~~~~ 169 (218)
T cd07596 148 EELEEELEEAESALEEARKRYE 169 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344344333333333333
No 385
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=28.51 E-value=2.4e+02 Score=22.57 Aligned_cols=11 Identities=0% Similarity=0.045 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 019043 173 LSAERARILRI 183 (347)
Q Consensus 173 l~elkdk~lRl 183 (347)
+..++-.|..+
T Consensus 26 ~~hm~~e~~~L 36 (79)
T PF06657_consen 26 FGHMKMEHQEL 36 (79)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 386
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=28.48 E-value=3.2e+02 Score=24.89 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=38.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
...+...+.+...+.+.+.....++....-.+.|..+..+-|++|+.+
T Consensus 85 ~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~ 132 (158)
T PF09486_consen 85 EERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDR 132 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 355666667777777888888888888888899999999999988755
No 387
>PLN03188 kinesin-12 family protein; Provisional
Probab=28.31 E-value=2.5e+02 Score=33.52 Aligned_cols=16 Identities=13% Similarity=0.526 Sum_probs=12.1
Q ss_pred HHHHHhHHHHHHHHHH
Q 019043 180 ILRISADFDNFRKRTE 195 (347)
Q Consensus 180 ~lRl~ADfEN~RKRte 195 (347)
+.|.+.++++||....
T Consensus 969 ~~~~~~e~~~~~~~~d 984 (1320)
T PLN03188 969 LKRVQDELEHYRNFYD 984 (1320)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4577888888888763
No 388
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.03 E-value=1.1e+03 Score=28.04 Aligned_cols=91 Identities=10% Similarity=0.217 Sum_probs=47.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHH
Q 019043 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSI 244 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I 244 (347)
++..-+-.+.-+..++..+.-|+++.|+-+.....++.. .+..+..+-|=+-++.|-++.... .-+.+.+-++.+
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~--~~~~i~~~~p~i~~i~r~l~~~e~---~~~~L~~~~n~v 751 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQR--TESEIDEFGPEISEIKRKLQNREG---EMKELEERMNKV 751 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhCchHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344444555566677777788888888666555554443 333444555555555554433211 012222333333
Q ss_pred H-HHHHHHHHhCCCeeec
Q 019043 245 Y-KQLVEILGSLGVVPVE 261 (347)
Q Consensus 245 ~-kqL~~iL~k~GVe~I~ 261 (347)
. +-|..+..+.||. |.
T Consensus 752 ed~if~~f~~~igv~-ir 768 (1141)
T KOG0018|consen 752 EDRIFKGFCRRIGVR-IR 768 (1141)
T ss_pred HHHHHHHhhhhcCee-ee
Confidence 2 3344456777887 54
No 389
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.88 E-value=2.8e+02 Score=21.23 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=10.7
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
+..+..++..|..++..|..++..++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 390
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.79 E-value=6.7e+02 Score=29.58 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=50.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNS 240 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg 240 (347)
.++..+..++.+++.++.+-.++..+.... ..+++ +. +....+.-.+|..+-+.+.++...+..-......+-..
T Consensus 811 ~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k~---k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ 885 (1141)
T KOG0018|consen 811 RWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-KN---KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESK 885 (1141)
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 334444555555555554444444444444 11111 11 34455666777777778888776654321111111122
Q ss_pred HHHHHHHHHHHHHhCCCeeec
Q 019043 241 YQSIYKQLVEILGSLGVVPVE 261 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~GVe~I~ 261 (347)
+.....+-.++|.+..++.|+
T Consensus 886 ie~~~~er~~lL~~ckl~~I~ 906 (1141)
T KOG0018|consen 886 IERKESERHNLLSKCKLEDIE 906 (1141)
T ss_pred HHHHHHHHHHHHHHhhhcccc
Confidence 333445667799999999987
No 391
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.75 E-value=1.3e+02 Score=24.04 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 170 SEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 170 ~~el~elkdk~lRl~ADfEN~RKR 193 (347)
+++++.+++++.+.++=+..||.|
T Consensus 58 ~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 58 EEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444443
No 392
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=27.35 E-value=4e+02 Score=22.98 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGE 208 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ 208 (347)
++.|+..-+.--+.-+.....||+-..-+..+++.||.+.++|+......+...
T Consensus 12 LqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~ 65 (108)
T KOG1772|consen 12 LQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGS 65 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 393
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.30 E-value=1.5e+02 Score=25.03 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
.++++..|+.++..|+.|++ ++.-.+.|-+-|++++
T Consensus 76 ~~~ei~~L~~el~~L~~E~d-----iLKKa~~~~~~~~~~~ 111 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENE-----LLKEAVEYGRAKKWIA 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhchhhhhh
Confidence 44455556666665555543 5555666666666653
No 394
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.19 E-value=3.4e+02 Score=26.90 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=17.5
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILR 182 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lR 182 (347)
..+.....|...+++++...+++++++++++.-
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e 232 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERITE 232 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555666655555543
No 395
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=27.19 E-value=2e+02 Score=30.12 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=24.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
++.++..+..++..++.++..++..+++++...
T Consensus 198 ~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 198 LKSDIEELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456777788888888888888888777776554
No 396
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=27.14 E-value=3.5e+02 Score=22.13 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=26.6
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
.+|..++....++...+..+..++..+.++..|+.++.....
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kad 44 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKAD 44 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666677777777776654433
No 397
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.12 E-value=3.5e+02 Score=22.60 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=8.9
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKV 166 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l 166 (347)
.+.++.+.+...+..+..++.++
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l 58 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKL 58 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333333333333333
No 398
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=26.91 E-value=4.7e+02 Score=32.45 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHhhhh----hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFE----DEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 142 e~k~~eiE~~l~~~e----~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
+..+++++..+..++ .....+...+..+..++.++++...|+.+.|.+++++
T Consensus 1327 e~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1327 ENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444 4444555566677777777888888888888887777
No 399
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=26.89 E-value=3.6e+02 Score=22.20 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=20.9
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
++..+...+..|..-|..|++....+..++.++..-....|+..++
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333
No 400
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=26.87 E-value=3e+02 Score=21.20 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHH
Q 019043 186 DFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILG 253 (347)
Q Consensus 186 DfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~ 253 (347)
.|+..|.++-+|+.. -+.++|.-+..|-|-++.+.. ..+-...+..++++|.+.+.
T Consensus 2 ~Fe~qR~~Li~eI~~--------~~e~vl~nlN~LNRsLE~~i~----VGkEF~~V~~LW~~F~~~m~ 57 (58)
T PF08649_consen 2 YFERQRDRLIQEISE--------SMESVLNNLNALNRSLESVIS----VGKEFESVSSLWSQFYNGMA 57 (58)
T ss_pred hHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhHHHHHH----HhhhHHHHHHHHHHHHHHhc
Confidence 477777777776443 345566666777776665431 11223455667788887765
No 401
>PHA01794 hypothetical protein
Probab=26.86 E-value=4.6e+02 Score=23.39 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHHhhhhhhHHHHHhhhhhcc
Q 019043 208 EVMERLLQVLDNFERAKTQIKVQT 231 (347)
Q Consensus 208 ~ll~dLLpVlDnLErAl~~~~~e~ 231 (347)
-|...+.-+++|+|.+..+++..+
T Consensus 89 FF~~ki~kyien~EK~~~yl~~k~ 112 (134)
T PHA01794 89 FFRAKIKKYIENMEKSARYLKAKD 112 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 355677788999999998887543
No 402
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=26.78 E-value=5.1e+02 Score=23.92 Aligned_cols=11 Identities=0% Similarity=0.377 Sum_probs=4.2
Q ss_pred HHHHHHhHHHH
Q 019043 179 RILRISADFDN 189 (347)
Q Consensus 179 k~lRl~ADfEN 189 (347)
|+..+..+++.
T Consensus 144 K~~~~~~ei~~ 154 (216)
T cd07627 144 KLNSLLSELEE 154 (216)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 403
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=26.74 E-value=3.3e+02 Score=28.60 Aligned_cols=105 Identities=18% Similarity=0.252 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHHhc---CCChhhHHHHHHHHhhhhhHHH-HHHHHHHhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Q 019043 123 TSFIMETLQSYKEALA---SNDDTKAAEIEALLKSFEDEKI-DLERKVVNLSEELSAERARILRISAD-FDNFRKRTEKE 197 (347)
Q Consensus 123 ~~~~~~~l~~~~ea~~---~~~e~k~~eiE~~l~~~e~E~~-~L~~~l~~L~~el~elkdk~lRl~AD-fEN~RKRtekE 197 (347)
.+-...+|++....-. ...+..+.-|-..|..+....+ +-+..|..|+++++++..++.++.+- ++-+-..-.+|
T Consensus 99 T~~a~~Al~~l~~L~~~~~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~e 178 (478)
T PF11855_consen 99 TPAAEKALRFLERLEERRFVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARE 178 (478)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 3445556665554432 3344555555555554443332 34455666666666665555555543 12222333445
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Q 019043 198 RLSLVTNAQGEVMERLLQVLDNFERAKTQI 227 (347)
Q Consensus 198 ~e~~~~~A~e~ll~dLLpVlDnLErAl~~~ 227 (347)
+-....+....+..|+--|-|||...-..+
T Consensus 179 r~~~i~~la~~L~~DFr~V~~~~r~l~r~l 208 (478)
T PF11855_consen 179 RARQILQLARELPADFRRVEDNFRELDRAL 208 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666778888888888887765444
No 404
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=26.68 E-value=3.4e+02 Score=30.61 Aligned_cols=33 Identities=9% Similarity=0.277 Sum_probs=14.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
++++++..++.+++.++++|.++.-++...|+.
T Consensus 729 ~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 729 ENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 405
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.51 E-value=6e+02 Score=27.14 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=30.6
Q ss_pred CchhHHHHHHHHHHHhc----------CCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 122 PTSFIMETLQSYKEALA----------SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 122 ~~~~~~~~l~~~~ea~~----------~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
+.-...+.++.|+.--. .+-.-.+.-++.++...+....++..+..+++.-...++.+|..+-.++
T Consensus 93 rmk~W~~Iv~~yeK~n~~L~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~l 168 (507)
T PF05600_consen 93 RMKDWQEIVKLYEKDNLYLAEAAQILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQL 168 (507)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556778888874321 1111123333444444444444444444444444444444444444444
No 406
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.19 E-value=2.3e+02 Score=23.67 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=8.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARIL 181 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~l 181 (347)
.|.+.+..+++.+..+++++.
T Consensus 97 ~l~~~~~~l~~~l~~l~~~~~ 117 (126)
T TIGR00293 97 ELEKAIEKLQEALAELASRAQ 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344333333333
No 407
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=26.13 E-value=3.1e+02 Score=29.84 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
.+.++++.|..++++-.++.+.+..|.+.-.+.++.+.|......-.+|+++|.
T Consensus 383 ~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~ 436 (570)
T COG4477 383 NLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKS 436 (570)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455666666677777677777777777666667777777777777777777654
No 408
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.98 E-value=3.9e+02 Score=22.29 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHH--HHHHHHHHhHHHHHHHH
Q 019043 154 SFEDEKIDLERKVVNLSEELSAE--RARILRISADFDNFRKR 193 (347)
Q Consensus 154 ~~e~E~~~L~~~l~~L~~el~el--kdk~lRl~ADfEN~RKR 193 (347)
.+.+.......++..++.+++.+ ++.+-+++-++.+++-+
T Consensus 39 ~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~ 80 (106)
T PF10805_consen 39 KLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGE 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH
Confidence 33444444444555555554444 44444444444444433
No 409
>PRK14127 cell division protein GpsB; Provisional
Probab=25.87 E-value=2e+02 Score=24.62 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRI 183 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl 183 (347)
++-..+..+..++..|+.++..|++++.+++.+....
T Consensus 34 ~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 34 DVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444556667777888888888888877777666543
No 410
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.87 E-value=3.8e+02 Score=25.35 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=4.8
Q ss_pred HhhhhhhHHHH
Q 019043 213 LLQVLDNFERA 223 (347)
Q Consensus 213 LLpVlDnLErA 223 (347)
|-.|-|+|+.+
T Consensus 162 l~~v~~Dl~~i 172 (195)
T PF12761_consen 162 LKSVREDLDTI 172 (195)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 411
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.82 E-value=1.1e+03 Score=27.34 Aligned_cols=26 Identities=4% Similarity=0.287 Sum_probs=16.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 165 KVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
++..|+++|++++++++++.-|-+.+
T Consensus 487 ei~qlqarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44567777777777777766555443
No 412
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=25.66 E-value=23 Score=29.61 Aligned_cols=30 Identities=27% Similarity=0.456 Sum_probs=12.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAE 176 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~el 176 (347)
+....|..+..++..|..++..|..++.++
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l 51 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEEL 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333
No 413
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=25.51 E-value=2.7e+02 Score=31.01 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=2.5
Q ss_pred HHHHHh
Q 019043 132 SYKEAL 137 (347)
Q Consensus 132 ~~~ea~ 137 (347)
+..+|+
T Consensus 707 ~l~~aL 712 (784)
T PF04931_consen 707 ALAKAL 712 (784)
T ss_pred HHHHHh
Confidence 334444
No 414
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=25.43 E-value=9.3e+02 Score=26.48 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=15.9
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
++.++-.++..+.+++......+..|+..+.+++
T Consensus 30 r~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 30 RMQQMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444
No 415
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.37 E-value=8.3e+02 Score=25.89 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e 199 (347)
.++..|++.+.+|.+.+.+...+-.++.+++..+|+-...++-
T Consensus 173 ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~ 215 (446)
T KOG4438|consen 173 EEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKN 215 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 3556777777778887778888888999999999887666543
No 416
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.36 E-value=3.5e+02 Score=29.79 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 019043 169 LSEELSAERARILRISADF 187 (347)
Q Consensus 169 L~~el~elkdk~lRl~ADf 187 (347)
|..+++++|-+-.|+..|+
T Consensus 154 lr~elKe~KfRE~RllseY 172 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEY 172 (772)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 417
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=25.25 E-value=1.7e+02 Score=23.47 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=22.7
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILR 182 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lR 182 (347)
+|..+...+..|+..|..++++|-++.-.|+.
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777777777777777776
No 418
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=25.16 E-value=3.3e+02 Score=24.43 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhcCCChh
Q 019043 127 METLQSYKEALASNDDT 143 (347)
Q Consensus 127 ~~~l~~~~ea~~~~~e~ 143 (347)
.-+-+.|+..+...+..
T Consensus 26 ~kl~r~Y~~lm~g~~~~ 42 (151)
T PF14584_consen 26 RKLKRRYDALMRGKDGK 42 (151)
T ss_pred HHHHHHHHHHhCCCCcc
Confidence 34456676666555543
No 419
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=25.12 E-value=6e+02 Score=24.15 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019043 176 ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLL 214 (347)
Q Consensus 176 lkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLL 214 (347)
....+.++.++|+.+.+.++.+..++...+.++++...|
T Consensus 116 a~~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el 154 (255)
T TIGR03825 116 ANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSL 154 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666777777777777877778888887665
No 420
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=24.93 E-value=1.3e+02 Score=24.28 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHhHHH
Q 019043 156 EDEKIDLERKVVNLSE 171 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~ 171 (347)
.+|...|+.+|..|++
T Consensus 6 ~eEn~~Lk~eiqkle~ 21 (76)
T PF07334_consen 6 QEENARLKEEIQKLEA 21 (76)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444443333
No 421
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.84 E-value=2.8e+02 Score=29.97 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhcC--------------CChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 124 SFIMETLQSYKEALAS--------------NDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 124 ~~~~~~l~~~~ea~~~--------------~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
..+..+|+..++.... +.+.-..+.+..+..+.++..++.+++.+|+++++++++++.++.
T Consensus 53 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 53 TKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHhccccccchhhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 422
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=24.78 E-value=5.3e+02 Score=23.65 Aligned_cols=17 Identities=18% Similarity=0.435 Sum_probs=10.0
Q ss_pred HHHHHhHHHHHHHHHHH
Q 019043 180 ILRISADFDNFRKRTEK 196 (347)
Q Consensus 180 ~lRl~ADfEN~RKRtek 196 (347)
++.-..|+|++.+++++
T Consensus 120 ll~hr~e~ee~~~~l~~ 136 (175)
T PRK13182 120 LLQHRREMEEMLERLQK 136 (175)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 45555666666666554
No 423
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.74 E-value=5e+02 Score=29.84 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=12.9
Q ss_pred CCCCceeEEec-----cccccC
Q 019043 283 FDEGVIIEEFR-----KGFKLG 299 (347)
Q Consensus 283 ~e~gtVveV~q-----kGY~l~ 299 (347)
+.+|.||.|.. +||+.|
T Consensus 712 f~pGDII~V~esq~aEPGWlaG 733 (1118)
T KOG1029|consen 712 FEPGDIIIVFESQAAEPGWLAG 733 (1118)
T ss_pred ccCCCEEEEehhccCCcccccc
Confidence 67899998875 577754
No 424
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.73 E-value=1.9e+02 Score=26.69 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=26.5
Q ss_pred CCCCccCCchhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhh---HHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 115 TSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFED---EKIDLERKVVNLSEELSAERARIL 181 (347)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~---E~~~L~~~l~~L~~el~elkdk~l 181 (347)
-+.-.....+..-..|..--+-..++-+..+.+++.++..++. ....|+.+..-|+.+++.+++.|+
T Consensus 99 cs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL 168 (171)
T PF04799_consen 99 CSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQYL 168 (171)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444455555555444444444444555555544443332 333444455555555555555554
No 425
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=24.69 E-value=5e+02 Score=23.13 Aligned_cols=53 Identities=28% Similarity=0.281 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+.|..+++.+|+.++.+...|+..+..|+.++.........+..|.+|.++=+
T Consensus 2 e~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~ei 54 (140)
T PF10473_consen 2 EEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEI 54 (140)
T ss_pred cHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777777777777777766553
No 426
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.63 E-value=3.2e+02 Score=27.79 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=5.3
Q ss_pred cccCCeeeecc
Q 019043 296 FKLGDRLLRPS 306 (347)
Q Consensus 296 Y~l~dRVLRPA 306 (347)
|..+++|||.|
T Consensus 259 f~~KE~IL~aA 269 (370)
T PF02994_consen 259 FQDKEKILKAA 269 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 44444444444
No 427
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=24.59 E-value=6.2e+02 Score=24.13 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=31.4
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
..+..+..+-..|+.+-..|.++...+.+......++++--|...++|+++..-.
T Consensus 52 ~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~ 106 (228)
T PRK06800 52 KELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYE 106 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555555556666677777777777777665433
No 428
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=24.51 E-value=1.5e+03 Score=28.50 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=43.0
Q ss_pred cCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 138 ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (347)
Q Consensus 138 ~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~ 201 (347)
.+.+...+..+.+.+..+++++...+..++++..++..+++++....-++.|-++-..++..++
T Consensus 1302 k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql 1365 (1822)
T KOG4674|consen 1302 KDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQL 1365 (1822)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666667777777777777777777777777777777777666666666666655555544443
No 429
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.46 E-value=3.4e+02 Score=25.63 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=35.7
Q ss_pred CCccCCchhHHHHHHHHHHHhc--------CCChhhHHHHHHHHhhhhhHHHHHHHHHHh--HHHHHHHHHHHHHHHHhH
Q 019043 117 DAEEAPTSFIMETLQSYKEALA--------SNDDTKAAEIEALLKSFEDEKIDLERKVVN--LSEELSAERARILRISAD 186 (347)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~ea~~--------~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~--L~~el~elkdk~lRl~AD 186 (347)
-.-..|+..+...|....+.-. .+--..+.++++.|+.++.+...|.+-+.. --+++-++..++.+.+.+
T Consensus 98 ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~e 177 (262)
T PF14257_consen 98 LTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSE 177 (262)
T ss_pred EEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3445777888888887773211 011124445555555555554444443321 112223344444444444
Q ss_pred HHHHHH
Q 019043 187 FDNFRK 192 (347)
Q Consensus 187 fEN~RK 192 (347)
+|.++.
T Consensus 178 Ie~~~~ 183 (262)
T PF14257_consen 178 IEQLEG 183 (262)
T ss_pred HHHHHH
Confidence 444443
No 430
>PRK10698 phage shock protein PspA; Provisional
Probab=24.37 E-value=6e+02 Score=23.92 Aligned_cols=67 Identities=12% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 127 METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 127 ~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
..++++.--.+.+.-+.=..-|+.-+..+++.+.+++..+...-.....++.+|..+.+..+++-+|
T Consensus 8 ~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 8 ADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333333333333333344444455555555555555555444445555555555555444444
No 431
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=24.34 E-value=3.2e+02 Score=29.79 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 019043 178 ARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (347)
Q Consensus 178 dk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErA 223 (347)
+-|..++.+|+++-|-+.|-+......++=+|+-..|--+++|-..
T Consensus 46 ~Dw~~i~~eFd~L~k~~~K~~~~~~~~~~P~~yir~l~~Led~v~e 91 (595)
T PF05470_consen 46 NDWSSILTEFDKLNKQLEKSKKIQQNEGIPRFYIRALVELEDFVNE 91 (595)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHH
Confidence 4477888899999998888765545555666666666666555444
No 432
>PF13166 AAA_13: AAA domain
Probab=24.08 E-value=9.2e+02 Score=25.94 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhCCCeee
Q 019043 244 IYKQLVEILGSLGVVPV 260 (347)
Q Consensus 244 I~kqL~~iL~k~GVe~I 260 (347)
....|-+.|..+|...+
T Consensus 460 ~~~~iN~~L~~~g~~~~ 476 (712)
T PF13166_consen 460 AADRINEELKRLGFSNF 476 (712)
T ss_pred HHHHHHHHHHHhCCCCe
Confidence 34556666776665543
No 433
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.06 E-value=1.2e+03 Score=27.46 Aligned_cols=172 Identities=15% Similarity=0.222 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-H
Q 019043 126 IMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT-N 204 (347)
Q Consensus 126 ~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~-~ 204 (347)
+..-|..|+..+. +.......+..++..++.+..+..+++.++...+.+.+.++-.+.|++-..+++.......-+. +
T Consensus 395 ir~ei~~l~~~i~-~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lW 473 (1200)
T KOG0964|consen 395 IRSEIEKLKRGIN-DTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELW 473 (1200)
T ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554 3444555666677777777777777777777777777777777777776666554433222111 1
Q ss_pred HHHHHHHHHh-hhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCC--CCccccceeeeecCC
Q 019043 205 AQGEVMERLL-QVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNP--FDPLLHEAIMREDST 281 (347)
Q Consensus 205 A~e~ll~dLL-pVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~--FDP~lHEAV~~~es~ 281 (347)
.-++-+..+| .+.++++++-.++... ....+..|+..|.+- ..-|+-.| .++++++- -|+.|--||..+...
T Consensus 474 REE~~l~~~i~~~~~dl~~~~~~L~~~--~~r~v~nGi~~v~~I-~e~~k~ng--v~G~v~eL~~v~~~f~tavEvtaGN 548 (1200)
T KOG0964|consen 474 REEKKLRSLIANLEEDLSRAEKNLRAT--MNRSVANGIDSVRKI-KEELKPNG--VFGTVYELIKVPNKFKTAVEVTAGN 548 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchhhhhhHHHHHH-HHHhcccc--cceehhhhhcCCHHHHhHHhhhccc
Confidence 1222233332 3445556655444321 123455676665432 22233333 34556553 345555565554322
Q ss_pred CC-----C-CCceeEEeccccccCC-eee
Q 019043 282 EF-----D-EGVIIEEFRKGFKLGD-RLL 303 (347)
Q Consensus 282 e~-----e-~gtVveV~qkGY~l~d-RVL 303 (347)
.. . +.+-..|+++=|+|++ ||=
T Consensus 549 sLF~iVVdndevATkIl~~~n~m~~GrVT 577 (1200)
T KOG0964|consen 549 SLFNIVVDNDEVATKILRKLNKMKGGRVT 577 (1200)
T ss_pred ceEEEEecccHHHHHHHHHHHhccCCeeE
Confidence 11 0 1122357778888875 763
No 434
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=23.94 E-value=2e+02 Score=28.87 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
......+..++++.+..+..|..|++++++++.++.-+.-..++|
T Consensus 134 ~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~y 178 (308)
T PF06717_consen 134 QDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRY 178 (308)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566667777777777777777777777777777777666665
No 435
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.90 E-value=89 Score=25.32 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhCCCeeecCCCCCCCcc
Q 019043 241 YQSIYKQLVEILGSLGVVPVETVGNPFDPL 270 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~ 270 (347)
++++..+|..-|. +|+.||+.|..|-|.
T Consensus 37 l~~fr~~vk~~l~--~ikiiDp~GnDVTP~ 64 (77)
T COG4224 37 LESFRGQVKNQLE--NIKIIDPKGNDVTPE 64 (77)
T ss_pred HHHHHHHHHHhhc--ceeeeCCCCCCCChH
Confidence 3456666666665 789999999999885
No 436
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=23.78 E-value=6.8e+02 Score=24.30 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=7.9
Q ss_pred cCCCCCCCcccc
Q 019043 261 ETVGNPFDPLLH 272 (347)
Q Consensus 261 ~~vGe~FDP~lH 272 (347)
-.+|-+|=+-+|
T Consensus 168 mt~g~d~m~fl~ 179 (230)
T PF03904_consen 168 MTIGSDFMDFLH 179 (230)
T ss_pred HHhcccchhhhh
Confidence 346667777777
No 437
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=23.57 E-value=6.4e+02 Score=24.21 Aligned_cols=19 Identities=5% Similarity=0.328 Sum_probs=12.5
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 019043 178 ARILRISADFDNFRKRTEK 196 (347)
Q Consensus 178 dk~lRl~ADfEN~RKRtek 196 (347)
||+..+..|+..+.+|...
T Consensus 159 dK~~~a~~Ev~e~e~k~~~ 177 (234)
T cd07665 159 DKLQQAKDEIAEWESRVTQ 177 (234)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5666677777777666543
No 438
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.47 E-value=7.2e+02 Score=24.46 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHH------HhcCCChhhHHHHHHHHhhhhh
Q 019043 123 TSFIMETLQSYKE------ALASNDDTKAAEIEALLKSFED 157 (347)
Q Consensus 123 ~~~~~~~l~~~~e------a~~~~~e~k~~eiE~~l~~~e~ 157 (347)
...+..+|+.|.- .+...+...+.++.++|.++++
T Consensus 37 ~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~ee 77 (258)
T PF15397_consen 37 ALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEE 77 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 4567777776653 3346666677777777776655
No 439
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=23.46 E-value=9e+02 Score=27.43 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCeeec-------CCCCCCCccccceee
Q 019043 242 QSIYKQLVEILGSLGVVPVE-------TVGNPFDPLLHEAIM 276 (347)
Q Consensus 242 ~~I~kqL~~iL~k~GVe~I~-------~vGe~FDP~lHEAV~ 276 (347)
+-|-..|..+|+..|++.+. ..|+.-|+++.+-|.
T Consensus 611 ~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe 652 (762)
T PLN03229 611 KEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIE 652 (762)
T ss_pred HHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHH
Confidence 34667899999999988762 245567777654443
No 440
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=23.46 E-value=6.2e+02 Score=23.73 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=17.5
Q ss_pred HHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHH
Q 019043 134 KEALASNDDTKAAEIEALLKSFEDEKIDLERKV 166 (347)
Q Consensus 134 ~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l 166 (347)
++.+.......+.+++..+..-+.+...++.++
T Consensus 38 r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eL 70 (206)
T PF14988_consen 38 RQELVSRYAKQTSELQDQLLQKEKEQAKLQQEL 70 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445556666666655555555555444
No 441
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=23.36 E-value=9e+02 Score=25.56 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
++.....-|..+++-+..++..+-.+-.|+.+++.|+
T Consensus 22 ~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S 58 (508)
T PF04129_consen 22 QIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERS 58 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444443
No 442
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.32 E-value=1.3e+03 Score=27.61 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCCccccceeeeecCCCCCCCceeEEec-----cccccCCeeeecceEE
Q 019043 266 PFDPLLHEAIMREDSTEFDEGVIIEEFR-----KGFKLGDRLLRPSMVK 309 (347)
Q Consensus 266 ~FDP~lHEAV~~~es~e~e~gtVveV~q-----kGY~l~dRVLRPA~V~ 309 (347)
.-|+.+--||.+. ...-++.||.-+- .||.-.+.|=|.--+.
T Consensus 627 ~Id~kYDvAIsTa--c~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~ 673 (1293)
T KOG0996|consen 627 AIDEKYDVAISTA--CARLDYIVVDTIETAQECINFLKKNNLGRATFII 673 (1293)
T ss_pred ccchHHHHHHHHh--ccccceEEeccHHHHHHHHHHHHHcCCCceeEEe
Confidence 4677777777762 2334566665442 3555555555544333
No 443
>PF13514 AAA_27: AAA domain
Probab=23.31 E-value=1e+03 Score=27.62 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHhCCC
Q 019043 238 NNSYQSIYKQLVEILGSLGV 257 (347)
Q Consensus 238 ~eg~~~I~kqL~~iL~k~GV 257 (347)
...+..+..++..++..+|+
T Consensus 756 ~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 756 EADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 33444555666666666664
No 444
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.22 E-value=1.1e+03 Score=26.41 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
...+|+.++..|..+++...+++..+..+.+.||+.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777777777777764
No 445
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=23.02 E-value=1e+03 Score=26.18 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=35.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFER 222 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLEr 222 (347)
.+..|..++.+...+.+...+...+|+.++.+..+.+.....+++... ....++++...++... ++.++..++.|--
T Consensus 422 ~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q-~e~~~~Q~~~e~~~~e-~~e~~~al~el~~ 498 (607)
T KOG0240|consen 422 RIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQ-QELSEIQEENEAAKDE-VKEVLTALEELAV 498 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344444444445555555444445555554444444443444444333 1223333344555555 5566655555543
No 446
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=23.01 E-value=2.5e+02 Score=22.35 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=8.0
Q ss_pred HHHHHhhhhhHHHHHHHHH
Q 019043 148 IEALLKSFEDEKIDLERKV 166 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l 166 (347)
.+..|..+..|.=.|+=+|
T Consensus 5 qe~~i~~L~KENF~LKLrI 23 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRI 23 (75)
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 3444444444444443333
No 447
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.98 E-value=1.5e+02 Score=25.29 Aligned_cols=34 Identities=6% Similarity=0.128 Sum_probs=16.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+++++++-++.+++.+..+..++...+.+.++.+
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555555444444
No 448
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.88 E-value=1.3e+03 Score=27.22 Aligned_cols=44 Identities=23% Similarity=0.383 Sum_probs=28.3
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+|..++.....|+..+...++.+..++++.-++..|.++||.|-
T Consensus 182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~ 225 (1072)
T KOG0979|consen 182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERE 225 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666666666777777777777777777664
No 449
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=22.77 E-value=5.1e+02 Score=22.51 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=16.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
....+|..+.....++.-+++++..-.+=+|++
T Consensus 69 ~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~ 101 (141)
T PF13874_consen 69 ETSARLEEARRRHQELSHRLLRVLRKQEILRNR 101 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455555555555555555555555544443
No 450
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=22.74 E-value=1.9e+02 Score=31.04 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHHhHH
Q 019043 155 FEDEKIDLERKVVNLS 170 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~ 170 (347)
+++++.+|++++.+++
T Consensus 573 ~e~~i~~le~~~~~~~ 588 (635)
T PRK11147 573 LPQLLEDLEAEIEALQ 588 (635)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 451
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.69 E-value=6.3e+02 Score=23.55 Aligned_cols=37 Identities=5% Similarity=-0.015 Sum_probs=20.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019043 179 RILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQ 215 (347)
Q Consensus 179 k~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLp 215 (347)
++.....++.||+.++-...+.....-+.+|++.=|.
T Consensus 65 kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~ 101 (200)
T cd07637 65 KFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVR 101 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555556666666666665555555555555544443
No 452
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.67 E-value=6.1e+02 Score=23.34 Aligned_cols=55 Identities=16% Similarity=0.318 Sum_probs=23.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAER------ARILRISADFDNFRKRTEKERLSLV 202 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elk------dk~lRl~ADfEN~RKRtekE~e~~~ 202 (347)
++..+..+++++..++.++..++.++...+ +.-..+.++++.++++..+-..++.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444332 2223344555555554444333333
No 453
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.56 E-value=1.3e+03 Score=27.18 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=34.7
Q ss_pred CCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHH
Q 019043 139 SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERA---RILRISADFDNFRKRTEKER 198 (347)
Q Consensus 139 ~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkd---k~lRl~ADfEN~RKRtekE~ 198 (347)
+.......+++.++.....+......++..+..+..+++. .|.+...-++|.+.-+.+.+
T Consensus 646 ~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qk 708 (1072)
T KOG0979|consen 646 DIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQE 708 (1072)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666655 55555566666544443333
No 454
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.44 E-value=5.8e+02 Score=28.44 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCeeecCCCCCCCccccceee
Q 019043 242 QSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIM 276 (347)
Q Consensus 242 ~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~ 276 (347)
..+...+.....-+|+..=.++. .|.|.+|....
T Consensus 184 ~~~~~~I~~l~~~Lg~~~~~~vt-~~~~sL~~~~~ 217 (660)
T KOG4302|consen 184 LELKEEIKSLCSVLGLDFSMTVT-DVEPSLVDHDG 217 (660)
T ss_pred HHHHHHHHHHHHHhCCCcccchh-hhhhhhhhccC
Confidence 34556677777788888777774 48888886654
No 455
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.40 E-value=8.6e+02 Score=25.79 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019043 127 METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQ 206 (347)
Q Consensus 127 ~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~ 206 (347)
...+++--+++. +++.+.|.+|..+++|...+.++........+-+-.+.+++.++---+-.+..+-.++...+..
T Consensus 36 ~~~~~a~~~ai~----a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n 111 (459)
T KOG0288|consen 36 LVILRAESRAIK----AKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFEN 111 (459)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q ss_pred HHHHHH
Q 019043 207 GEVMER 212 (347)
Q Consensus 207 e~ll~d 212 (347)
..++..
T Consensus 112 ~~~~l~ 117 (459)
T KOG0288|consen 112 AELALR 117 (459)
T ss_pred chhhHH
No 456
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.35 E-value=4.8e+02 Score=24.66 Aligned_cols=8 Identities=25% Similarity=0.094 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 019043 197 ERLSLVTN 204 (347)
Q Consensus 197 E~e~~~~~ 204 (347)
|.+++.+|
T Consensus 136 e~EqLL~Y 143 (195)
T PF12761_consen 136 EFEQLLDY 143 (195)
T ss_pred HHHHHHHH
Confidence 43443333
No 457
>PRK00106 hypothetical protein; Provisional
Probab=22.35 E-value=7.3e+02 Score=26.83 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=5.8
Q ss_pred CceeEEeccccccCCe
Q 019043 286 GVIIEEFRKGFKLGDR 301 (347)
Q Consensus 286 gtVveV~qkGY~l~dR 301 (347)
.||.-|.-+.=-|+||
T Consensus 224 ~tvs~v~lp~demkGr 239 (535)
T PRK00106 224 QTITTVHLPDDNMKGR 239 (535)
T ss_pred heeeeEEcCChHhhcc
Confidence 3333333333333333
No 458
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=22.20 E-value=1.4e+02 Score=25.28 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=18.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
++++|..++.++.-..++|-.+.--++.|.++..
T Consensus 57 ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 57 VEKEIRELQNQLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555555555555555555555555543
No 459
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=22.17 E-value=6e+02 Score=24.15 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=23.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
.|..++..|.+++...+.+..+....|+.=|+.=..|++....|
T Consensus 135 ~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~Y 178 (202)
T PF06818_consen 135 SLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRY 178 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555655555555555555444
No 460
>KOG4171 consensus Adenylate/guanylate kinase [Nucleotide transport and metabolism]
Probab=22.14 E-value=4.3e+02 Score=29.43 Aligned_cols=32 Identities=25% Similarity=0.548 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCeeecCCCCCC
Q 019043 236 KINNSYQSIYKQLVEILGSLGVVPVETVGNPF 267 (347)
Q Consensus 236 ~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~F 267 (347)
.+.+-++.+|..|..+-.-+||-.++++|+.|
T Consensus 464 ~vV~~LN~lyt~fD~~i~~~~VYKVETIGDaY 495 (671)
T KOG4171|consen 464 QVVNMLNELYTRFDRIIDTHDVYKVETIGDAY 495 (671)
T ss_pred HHHHHHHHHHHHHHHhhcccCeEEEeeccchh
Confidence 34456677899999999999999999999865
No 461
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.10 E-value=1.1e+02 Score=28.02 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=8.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKV 166 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l 166 (347)
+++|..+...-+...=|+.+|
T Consensus 3 eD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 344444444333333333333
No 462
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.08 E-value=3.7e+02 Score=20.69 Aligned_cols=26 Identities=8% Similarity=0.132 Sum_probs=10.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHH
Q 019043 164 RKVVNLSEELSAERARILRISADFDN 189 (347)
Q Consensus 164 ~~l~~L~~el~elkdk~lRl~ADfEN 189 (347)
.++..+++++++++.++.+++.+..+
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 463
>PHA00727 hypothetical protein
Probab=22.01 E-value=7.2e+02 Score=23.94 Aligned_cols=46 Identities=11% Similarity=0.272 Sum_probs=33.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 019043 176 ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221 (347)
Q Consensus 176 lkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLE 221 (347)
.+.+|..+.||+..-+|...+|+.+++-....+++.+=|--....-
T Consensus 55 k~~qf~qlkael~kkkkk~kkekvdv~vkv~kkwinsrlftaehyv 100 (278)
T PHA00727 55 KKQQFEQLKAELSKKKKKFKKEKVDVRVKVVKKWINSRLFTAEHYV 100 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcceeeehhHHHHhhhhccHHHHH
Confidence 3456778888888888888899888777766676666555444443
No 464
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.98 E-value=2.7e+02 Score=27.23 Aligned_cols=9 Identities=11% Similarity=-0.271 Sum_probs=3.6
Q ss_pred CCcccccee
Q 019043 267 FDPLLHEAI 275 (347)
Q Consensus 267 FDP~lHEAV 275 (347)
.||+..-.+
T Consensus 175 td~~~~v~v 183 (283)
T TIGR00219 175 TDYTNFVPA 183 (283)
T ss_pred EcCCCceEE
Confidence 344443333
No 465
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=21.95 E-value=4.5e+02 Score=21.62 Aligned_cols=78 Identities=10% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHH
Q 019043 166 VVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIY 245 (347)
Q Consensus 166 l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~ 245 (347)
..++..++.++-++|- ...++..|+......+.+.++. +..++..|-.++..|.-.+..-. -......+.+..++
T Consensus 18 ~~e~~~~l~~Wa~~~~-v~~~~~~f~~~~~~~~~~~~~~-~~~vi~~L~~a~~~l~~I~~n~~---lT~~q~~~~I~~l~ 92 (113)
T PF02520_consen 18 KAEIEEQLDEWAEKYG-VQDQYNEFKAQVQAQKEEVRKN-VTAVISNLSSAFAKLSAILDNKS---LTRQQQQEAIDALR 92 (113)
T ss_pred HHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCcc---cCHHHHHHHHHHHH
Q ss_pred HHH
Q 019043 246 KQL 248 (347)
Q Consensus 246 kqL 248 (347)
+++
T Consensus 93 ~~~ 95 (113)
T PF02520_consen 93 KQY 95 (113)
T ss_pred HHC
No 466
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=21.93 E-value=3.4e+02 Score=23.66 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
+..-.-....|.-+..|+..++..|...+++..+.++.++.+++.|+
T Consensus 68 ~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 68 EEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 467
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=21.88 E-value=2.7e+02 Score=22.81 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
++..+.-+...+..|+..+..+.+++..+++++..+.+.++
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.86 E-value=7.6e+02 Score=27.75 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMER 212 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~d 212 (347)
..+++.++..+..-+.++...+.+++.+..-++++..++.-...|+.|++.+...++..-...-.-+.
T Consensus 146 ~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~ 213 (716)
T KOG4593|consen 146 LREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQ 213 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.85 E-value=2.9e+02 Score=21.35 Aligned_cols=36 Identities=8% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
.......+..++..+++++++++.++.+++.+..++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>PF14282 FlxA: FlxA-like protein
Probab=21.81 E-value=4.7e+02 Score=21.78 Aligned_cols=62 Identities=10% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHhhhhhHHHHHHH----HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 139 SNDDTKAAEIEALLKSFEDEKIDLER----KVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 139 ~~~e~k~~eiE~~l~~~e~E~~~L~~----~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
.+....+..|+.++..+++++.+|.. --.....++..++.++.-+.+.+..+.....++...
T Consensus 15 ~~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 15 GSSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 471
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.78 E-value=3.2e+02 Score=22.87 Aligned_cols=41 Identities=17% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
++..+..++..+..|++.+..+++.+..+++++....+.++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=21.76 E-value=1.9e+02 Score=22.08 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
++++|+.|++.+.+.+.+.....++...|+
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 473
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=21.69 E-value=2.7e+02 Score=26.39 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
++|.++|..+|..+++||..|+.=+.-..--.-.++|++
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 474
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=3.5e+02 Score=30.23 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV-TNAQGEVMERL 213 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~-~~A~e~ll~dL 213 (347)
...+..+..++...+.+...++..+.++..++..++.+..|+..|.+-+++.+.+-+.... ..+.+.+...|
T Consensus 565 ~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EEl 637 (698)
T KOG0978|consen 565 KQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEEL 637 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHH
No 475
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=21.66 E-value=5.5e+02 Score=22.48 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLL-QVLDNFERAK 224 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLL-pVlDnLErAl 224 (347)
..++..+..++.+...|.++=....++.....+....-.++..+.+.-...-...+....--++.++=- .++-.+.-.+
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhcccchHhhhhHHHHHHH
Q 019043 225 TQIKVQTEGEEKINNSYQSIYK 246 (347)
Q Consensus 225 ~~~~~e~e~~~~l~eg~~~I~k 246 (347)
..+..+-...+.+...|+.|..
T Consensus 103 ~~L~k~I~~~e~iI~~fe~i~~ 124 (126)
T PF09403_consen 103 NKLDKEIAEQEQIIDNFEKIQS 124 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 476
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=21.64 E-value=4.2e+02 Score=21.09 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLE 221 (347)
..+...++..+..++.....++........++...-+++....-+-++.--.--......+...+......|---++.+.
T Consensus 13 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~ 92 (127)
T smart00502 13 RKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLS 92 (127)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhh--cccchHhhhhHHHHHHHHHHHHHH
Q 019043 222 RAKTQIKV--QTEGEEKINNSYQSIYKQLVEILG 253 (347)
Q Consensus 222 rAl~~~~~--e~e~~~~l~eg~~~I~kqL~~iL~ 253 (347)
.++..+.. ...+.-.+......|..++..++.
T Consensus 93 ~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l~~ 126 (127)
T smart00502 93 HAINFTEEALNSGDPTELLLSKKLIIERLQNLLK 126 (127)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
No 477
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.62 E-value=1.9e+02 Score=21.30 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=0.0
Q ss_pred CChhhHHHH-HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 019043 140 NDDTKAAEI-EALLKSFEDEKIDLERKVVNLSEELSAERAR 179 (347)
Q Consensus 140 ~~e~k~~ei-E~~l~~~e~E~~~L~~~l~~L~~el~elkdk 179 (347)
++.....+| ...-..++..+.++.++|++|++..+.|-++
T Consensus 1 Sd~~EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 1 SDRAEAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp --------------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
No 478
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=21.54 E-value=2.2e+02 Score=28.45 Aligned_cols=40 Identities=10% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 153 KSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 153 ~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
+....|.+.|..++..|++...+||++..++.-|+.-+|+
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.54 E-value=2.7e+02 Score=23.42 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHhcCCC--hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 122 PTSFIMETLQSYKEALASND--DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (347)
Q Consensus 122 ~~~~~~~~l~~~~ea~~~~~--e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~ 180 (347)
+...+...|..+...-.... ...+..++.++..++.++..|+..+..+...+....+++
T Consensus 57 ~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~~ 117 (118)
T cd04776 57 SLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRERL 117 (118)
T ss_pred CHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 480
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=21.50 E-value=1.4e+02 Score=29.95 Aligned_cols=76 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHhhhhhHHHH----HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019043 140 NDDTKAAEIEALLKSFEDEKID----LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQ 215 (347)
Q Consensus 140 ~~e~k~~eiE~~l~~~e~E~~~----L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLp 215 (347)
+++..+.++++++.++..-... +..++..|++++.+++.++...+--|+-++.--...+-... ..+..++.++++
T Consensus 7 ~fe~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~v~~ar~~~Rp~~~-d~i~~l~d~f~E 85 (316)
T TIGR00513 7 DFEKPIAELEAKIESLRARSRDEDVDLSEEIERLEKRSVELTKKIFSNLGAWQRLQLARHPDRPYTL-DYIELIFDDFFE 85 (316)
T ss_pred hhhHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCchH-HHHHHHhhhhee
Q ss_pred h
Q 019043 216 V 216 (347)
Q Consensus 216 V 216 (347)
+
T Consensus 86 L 86 (316)
T TIGR00513 86 L 86 (316)
T ss_pred e
No 481
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.48 E-value=1.5e+03 Score=27.33 Aligned_cols=109 Identities=9% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLE 221 (347)
+..+.+...++..+++.......++..++.++..|.....+..-+.+..+..+.++-+.++. .+.++=+.|.|+.-.+-
T Consensus 418 eke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~-e~~~~ekel~~~~~~~n 496 (1293)
T KOG0996|consen 418 EKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIRE-EIEKLEKELMPLLKQVN 496 (1293)
T ss_pred HHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhcccchHhhhhHHHHHHHHHHHH
Q 019043 222 RAKTQIKVQTEGEEKINNSYQSIYKQLVEI 251 (347)
Q Consensus 222 rAl~~~~~e~e~~~~l~eg~~~I~kqL~~i 251 (347)
.+...+.......+-+..--....+++..+
T Consensus 497 ~~~~e~~vaesel~~L~~~~~~~~~~~e~l 526 (1293)
T KOG0996|consen 497 EARSELDVAESELDILLSRHETGLKKVEEL 526 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=21.47 E-value=2.5e+02 Score=25.20 Aligned_cols=76 Identities=11% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHhCCCee
Q 019043 180 ILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVP 259 (347)
Q Consensus 180 ~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k~GVe~ 259 (347)
+..+..-+-.++||..+=....-...++.++.++..-++.+....+... +-++.+...+...+.+.||..
T Consensus 18 ~~~~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~kvgvvR 87 (151)
T PF14584_consen 18 IIILNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELE----------KRIEELEEKLRNCVQKVGVVR 87 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhccceEEEEE
Q ss_pred ecCCCC
Q 019043 260 VETVGN 265 (347)
Q Consensus 260 I~~vGe 265 (347)
+++-++
T Consensus 88 YnAF~d 93 (151)
T PF14584_consen 88 YNAFED 93 (151)
T ss_pred ccCccc
No 483
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.43 E-value=4.4e+02 Score=27.60 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhc-------CCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 127 METLQSYKEALA-------SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 127 ~~~l~~~~ea~~-------~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
...|..+..... ......++++.+.+..+..+..++..++.+++.++.++++++.+++.++.++
T Consensus 101 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 101 AKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 484
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=21.38 E-value=6.9e+02 Score=23.47 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFE 221 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLE 221 (347)
+.++.+++..|..+.+.+..|+............+.+++..+...+.++-.|... .+.-+..|---+|.|+
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~---------aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEF---------AERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhcccchHhhhhHHHHHHHHH
Q 019043 222 RAKTQIKVQTEGEEKINNSYQSIYKQL 248 (347)
Q Consensus 222 rAl~~~~~e~e~~~~l~eg~~~I~kqL 248 (347)
--+...+ .....+...+..++..|
T Consensus 211 ~eL~~~k---~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 211 DELEKEK---EKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHh
No 485
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=21.37 E-value=4e+02 Score=24.97 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
+.+++..|.........+...+.....++..+..+-.|++..+...++|+..
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~e 131 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQE 131 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
No 486
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.31 E-value=4.5e+02 Score=25.40 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~ 202 (347)
|.-+..+.+..++++.+|++|+..++..+.-++.|.+.+|+=-.+=-+.++
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.30 E-value=4e+02 Score=21.07 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 154 ~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
...+-...|+.++..++.++..++.++..+...+.+++..+.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.30 E-value=3.8e+02 Score=22.00 Aligned_cols=43 Identities=9% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 154 ~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
..++-..-++.++..+++++..+.+.+..+...++.++..+++
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=21.27 E-value=1.4e+02 Score=30.14 Aligned_cols=76 Identities=11% Similarity=0.180 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHhhhhh----HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019043 140 NDDTKAAEIEALLKSFED----EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQ 215 (347)
Q Consensus 140 ~~e~k~~eiE~~l~~~e~----E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLp 215 (347)
+++..+.++|.++.++.. ...++.++|..|++++.+++.++...+--|+.++.--..++-....| +..++.++++
T Consensus 10 ~fe~~i~el~~~i~~l~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~w~~v~~aR~~~Rp~~~d~-i~~l~d~f~E 88 (322)
T CHL00198 10 DFMKPLAELESQVEELSKLAPKNDKVINNKLKSFQRKLRILKKEIFYSLTPLQRLHLVRQSERPTTLDY-IPYILDEWIE 88 (322)
T ss_pred chhhhHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhhcCCCCCCHHHH-HHHHhHHHHH
Q ss_pred h
Q 019043 216 V 216 (347)
Q Consensus 216 V 216 (347)
+
T Consensus 89 l 89 (322)
T CHL00198 89 L 89 (322)
T ss_pred H
No 490
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=21.25 E-value=5.3e+02 Score=22.15 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHH
Q 019043 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERAR-ILRISADFDNFRKRTEKERLSLV 202 (347)
Q Consensus 124 ~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk-~lRl~ADfEN~RKRtekE~e~~~ 202 (347)
.++...|..-+..+. ..+.+.+......+....+.+.++.....+..++.+. ...+.+..++.+....++.+.+.
T Consensus 27 ~pi~~~l~~R~~~I~----~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~ 102 (156)
T PRK05759 27 PPIMKALEERQKKIA----DGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIK 102 (156)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhh
Q 019043 203 TNAQGEVMERLLQVLDNFERAKTQI 227 (347)
Q Consensus 203 ~~A~e~ll~dLLpVlDnLErAl~~~ 227 (347)
..+...+-..---..+.+..-+..+
T Consensus 103 ~~a~~~i~~e~~~a~~~l~~~~~~l 127 (156)
T PRK05759 103 AQAQAEIEQERKRAREELRKQVADL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PHA02109 hypothetical protein
Probab=21.24 E-value=2.4e+02 Score=26.59 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
|...-+++.+|..+|..|..|+.+++++++.+.++...|
T Consensus 188 ~~~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~ 226 (233)
T PHA02109 188 LTDKLKQISELTIKLEALSDEACQVKHKILNLRAEVKRR 226 (233)
T ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=21.19 E-value=2.1e+02 Score=28.40 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
+..++.++..|++++++++.++.....+++++|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIER 38 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=21.17 E-value=2.3e+02 Score=23.11 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRI 183 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl 183 (347)
.+..+..++.+.+.++.++++.+++|..++..+
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEA 34 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.13 E-value=7.3e+02 Score=23.69 Aligned_cols=93 Identities=13% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHH----------HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKI----------DLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 124 ~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~----------~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
..|..+.+.|..+-. .....+..+...+...+ ........++...+..+.+|......+.|.|.-
T Consensus 131 ~eL~k~kK~Y~~~~~-----ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k~~~akNe 205 (241)
T cd07656 131 NELQTAMKTYHTYHA-----ESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKARNE 205 (241)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 019043 194 TEKERLSLVTNAQGEVMERLLQVLDNFE 221 (347)
Q Consensus 194 tekE~e~~~~~A~e~ll~dLLpVlDnLE 221 (347)
+---+......-...+..+|-.++|.|+
T Consensus 206 Yll~l~~aN~~~~~yy~~~lp~lld~ld 233 (241)
T cd07656 206 YLLNLAAANATIHKYFVQDLSDLIDCMD 233 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhc
No 495
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.02 E-value=3.6e+02 Score=26.09 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHh
Q 019043 163 ERKVVNLSEELSAERARILRISADF-DNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225 (347)
Q Consensus 163 ~~~l~~L~~el~elkdk~lRl~ADf-EN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~ 225 (347)
..++..+.++++.++.+|.+...+| .+|-+-.+.-+.+ .-....+|++-.|-.++++.-+.
T Consensus 80 ~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~--~pew~~~Ir~~~~~~~~v~~r~~ 141 (257)
T PF11348_consen 80 EDKAEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDR--HPEWADIIRRAAPPAEDVRSRFS 141 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ChHHHHHHHhcCCCHHHHHhhcc
No 496
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.93 E-value=5.7e+02 Score=22.39 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~ 203 (347)
+..+-.....++..+....+.|..|++++......|.+....++.|++.++......+.
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.89 E-value=76 Score=33.78 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISA 185 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~A 185 (347)
+++..++ ++++|+++|.+|+++..++++++.+...
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhH
No 498
>PRK12704 phosphodiesterase; Provisional
Probab=20.83 E-value=1e+03 Score=25.37 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--
Q 019043 127 METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN-- 204 (347)
Q Consensus 127 ~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~-- 204 (347)
++..+..+..+.......-.+++.++...+.++...+.+|...++.+..-.+.+.....+++.-++.+.+...++...
T Consensus 52 ke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 52 EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhH
Q 019043 205 AQGEVMERLLQVLDNF 220 (347)
Q Consensus 205 A~e~ll~dLLpVlDnL 220 (347)
-++.+.......+.++
T Consensus 132 ~~~~~~~~~~~~l~~~ 147 (520)
T PRK12704 132 ELEELIEEQLQELERI 147 (520)
T ss_pred HHHHHHHHHHHHHHHH
No 499
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.81 E-value=1.9e+02 Score=23.41 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
...++.+++++++.++.++..+..++..++++++-++
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 500
>PRK12705 hypothetical protein; Provisional
Probab=20.78 E-value=1.1e+03 Score=25.45 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--
Q 019043 127 METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN-- 204 (347)
Q Consensus 127 ~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~-- 204 (347)
++-+..++.-+.......-.++...-..+....+.|..+...|.+.-.++..+-..+....+++.++.++....+...
T Consensus 58 ~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~ 137 (508)
T PRK12705 58 KELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAG 137 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred -----HHHHHHHHH
Q 019043 205 -----AQGEVMERL 213 (347)
Q Consensus 205 -----A~e~ll~dL 213 (347)
|.+.+++.+
T Consensus 138 lt~~eak~~l~~~~ 151 (508)
T PRK12705 138 LTPEQARKLLLKLL 151 (508)
T ss_pred CCHHHHHHHHHHHH
Done!