Query 019043
Match_columns 347
No_of_seqs 210 out of 1243
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:00:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ani_A Protein GRPE; chaperone 100.0 6.5E-46 2.2E-50 342.0 17.7 153 159-312 61-213 (213)
2 3a6m_A Protein GRPE, HSP-70 co 100.0 5.5E-47 1.9E-51 340.7 8.7 160 150-315 12-171 (177)
3 1dkg_A Nucleotide exchange fac 100.0 9.9E-46 3.4E-50 337.4 16.2 150 162-314 47-196 (197)
4 2v71_A Nuclear distribution pr 94.5 1.5 5.2E-05 39.5 15.5 80 148-227 47-128 (189)
5 3swy_A Cyclic nucleotide-gated 88.7 2.2 7.7E-05 30.2 7.5 41 161-201 2-42 (46)
6 3swf_A CGMP-gated cation chann 88.0 3.1 0.00011 32.3 8.5 44 161-204 4-47 (74)
7 2v71_A Nuclear distribution pr 88.0 15 0.0005 33.1 16.6 103 124-227 6-114 (189)
8 3hnw_A Uncharacterized protein 87.4 4.3 0.00015 34.6 10.0 47 145-191 77-123 (138)
9 3na7_A HP0958; flagellar bioge 87.3 7.9 0.00027 35.5 12.5 47 148-194 30-76 (256)
10 2v66_B Nuclear distribution pr 86.5 13 0.00044 30.8 14.1 71 157-227 3-75 (111)
11 3etw_A Adhesin A; antiparallel 85.1 9.9 0.00034 31.9 10.8 36 176-223 69-104 (119)
12 3he5_A Synzip1; heterodimeric 85.0 3.5 0.00012 28.7 6.6 44 145-195 5-48 (49)
13 3na7_A HP0958; flagellar bioge 85.0 23 0.00078 32.4 16.1 36 240-275 176-216 (256)
14 2jee_A YIIU; FTSZ, septum, coi 83.8 7 0.00024 30.7 8.7 7 210-216 71-77 (81)
15 4emc_A Monopolin complex subun 82.0 7.5 0.00026 35.0 9.3 55 129-187 3-57 (190)
16 4etp_A Kinesin-like protein KA 81.6 3.8 0.00013 40.4 8.0 56 143-202 3-58 (403)
17 3nmd_A CGMP dependent protein 81.4 4.2 0.00015 31.3 6.5 47 145-191 21-67 (72)
18 1uix_A RHO-associated kinase; 80.0 18 0.00062 27.7 10.6 61 150-211 4-64 (71)
19 1jcd_A Major outer membrane li 79.1 9.7 0.00033 27.5 7.4 48 142-189 3-50 (52)
20 3plt_A Sphingolipid long chain 79.0 36 0.0012 31.5 13.2 92 165-256 132-229 (234)
21 3hnw_A Uncharacterized protein 77.8 5.7 0.0002 33.8 6.9 44 151-194 69-112 (138)
22 2avr_X Adhesion A; antiparalle 77.4 19 0.00066 30.1 9.8 36 176-223 69-104 (119)
23 3cve_A Homer protein homolog 1 76.7 23 0.0008 27.1 9.4 48 148-195 5-52 (72)
24 3htk_A Structural maintenance 76.5 12 0.00043 26.6 7.5 51 151-201 6-56 (60)
25 3tnu_A Keratin, type I cytoske 76.4 32 0.0011 28.5 11.4 62 143-204 38-99 (131)
26 1t2k_D Cyclic-AMP-dependent tr 76.2 5.8 0.0002 28.9 5.7 37 144-180 23-59 (61)
27 1ic2_A Tropomyosin alpha chain 75.9 8.9 0.0003 29.4 7.0 45 150-194 6-50 (81)
28 3trt_A Vimentin; cytoskeleton, 75.4 19 0.00065 26.9 8.6 69 123-191 7-76 (77)
29 3ghg_A Fibrinogen alpha chain; 74.0 30 0.001 35.7 12.1 49 204-253 134-190 (562)
30 3tnu_B Keratin, type II cytosk 73.9 36 0.0012 28.0 12.7 65 141-205 34-98 (129)
31 3u59_A Tropomyosin beta chain; 72.8 21 0.00072 28.4 8.7 49 146-194 5-53 (101)
32 3u1c_A Tropomyosin alpha-1 cha 72.3 20 0.0007 28.6 8.6 30 155-184 42-71 (101)
33 1ci6_A Transcription factor AT 71.8 11 0.00036 27.9 6.2 35 144-178 24-58 (63)
34 3a7p_A Autophagy protein 16; c 71.0 42 0.0014 29.2 10.7 53 144-196 69-121 (152)
35 3oja_B Anopheles plasmodium-re 70.3 24 0.00082 35.1 10.4 15 241-255 567-581 (597)
36 1gd2_E Transcription factor PA 69.9 6.8 0.00023 29.9 4.9 40 152-191 31-70 (70)
37 3oja_B Anopheles plasmodium-re 69.7 33 0.0011 34.1 11.3 7 128-134 463-469 (597)
38 3cvf_A Homer-3, homer protein 68.8 22 0.00074 27.8 7.6 44 150-193 13-56 (79)
39 3jsv_C NF-kappa-B essential mo 68.7 42 0.0015 27.0 9.5 26 145-170 11-36 (94)
40 1wt6_A Myotonin-protein kinase 68.5 17 0.00057 28.6 6.9 43 154-196 28-70 (81)
41 3bas_A Myosin heavy chain, str 68.1 35 0.0012 26.6 8.9 14 184-197 58-71 (89)
42 2dfs_A Myosin-5A; myosin-V, in 67.8 31 0.0011 38.2 11.5 46 153-198 973-1018(1080)
43 2wt7_A Proto-oncogene protein 67.7 15 0.0005 27.0 6.2 33 145-177 25-57 (63)
44 2dfs_A Myosin-5A; myosin-V, in 67.7 99 0.0034 34.2 15.4 34 151-184 985-1018(1080)
45 3vkg_A Dynein heavy chain, cyt 67.3 25 0.00085 43.5 11.3 51 143-193 2014-2064(3245)
46 1hjb_A Ccaat/enhancer binding 67.2 19 0.00064 28.5 7.1 39 144-182 37-75 (87)
47 2yy0_A C-MYC-binding protein; 66.6 9.5 0.00033 27.5 4.8 21 158-178 27-47 (53)
48 4ani_A Protein GRPE; chaperone 66.4 58 0.002 29.6 11.2 49 145-196 61-109 (213)
49 3mq7_A Bone marrow stromal ant 66.2 23 0.0008 29.6 7.7 32 163-194 70-101 (121)
50 2oqq_A Transcription factor HY 65.3 19 0.00066 25.0 5.9 32 145-176 5-36 (42)
51 1s1c_X RHO-associated, coiled- 65.0 45 0.0015 25.5 10.3 60 148-210 4-63 (71)
52 3u06_A Protein claret segregat 63.8 19 0.00066 35.5 8.1 54 145-202 5-58 (412)
53 1jnm_A Proto-oncogene C-JUN; B 63.3 7.1 0.00024 28.5 3.7 36 144-179 23-58 (62)
54 1t3j_A Mitofusin 1; coiled coi 63.2 25 0.00085 28.4 7.2 43 147-193 51-93 (96)
55 3a7p_A Autophagy protein 16; c 62.8 48 0.0017 28.8 9.4 53 142-194 81-133 (152)
56 2jee_A YIIU; FTSZ, septum, coi 62.6 54 0.0018 25.7 11.1 25 166-190 22-46 (81)
57 2yy0_A C-MYC-binding protein; 62.5 11 0.00038 27.1 4.5 29 166-194 21-49 (53)
58 3mq7_A Bone marrow stromal ant 61.9 33 0.0011 28.7 7.9 38 157-194 71-108 (121)
59 1m1j_B Fibrinogen beta chain; 61.9 1.4E+02 0.0048 30.2 15.3 34 124-161 85-118 (464)
60 3ol1_A Vimentin; structural ge 60.5 68 0.0023 26.2 11.0 41 158-198 21-61 (119)
61 3ol1_A Vimentin; structural ge 60.2 69 0.0024 26.2 13.9 56 143-202 20-75 (119)
62 1x8y_A Lamin A/C; structural p 60.2 57 0.002 25.2 9.5 37 162-198 33-72 (86)
63 1u2m_A Histone-like protein HL 60.0 6.8 0.00023 32.4 3.5 32 177-208 66-97 (143)
64 1gk6_A Vimentin; intermediate 59.7 32 0.0011 24.9 6.7 45 150-194 7-51 (59)
65 2v4h_A NF-kappa-B essential mo 59.2 75 0.0026 26.2 11.2 47 147-197 35-81 (110)
66 3u59_A Tropomyosin beta chain; 58.8 66 0.0022 25.4 13.1 11 145-155 25-35 (101)
67 3oja_A Leucine-rich immune mol 58.5 72 0.0025 31.0 11.2 20 180-199 430-449 (487)
68 3qh9_A Liprin-beta-2; coiled-c 58.0 57 0.002 25.6 8.2 37 155-191 38-74 (81)
69 3qh9_A Liprin-beta-2; coiled-c 57.9 35 0.0012 26.8 6.9 37 158-194 27-63 (81)
70 3q8t_A Beclin-1; autophagy, AT 57.7 69 0.0024 25.4 12.9 44 145-188 6-49 (96)
71 2xv5_A Lamin-A/C; structural p 57.7 57 0.002 24.9 8.1 10 189-198 40-49 (74)
72 1x8y_A Lamin A/C; structural p 57.5 64 0.0022 24.9 8.9 53 144-196 29-81 (86)
73 3hd7_A Vesicle-associated memb 55.5 72 0.0025 24.9 9.9 59 141-199 3-61 (91)
74 3vkg_A Dynein heavy chain, cyt 54.8 52 0.0018 40.8 11.0 45 149-193 2027-2071(3245)
75 3etw_A Adhesin A; antiparallel 54.6 93 0.0032 25.9 10.8 16 147-162 6-21 (119)
76 2xv5_A Lamin-A/C; structural p 54.4 68 0.0023 24.4 8.0 53 145-197 7-59 (74)
77 1gk4_A Vimentin; intermediate 53.6 67 0.0023 24.6 8.0 36 163-198 32-70 (84)
78 3q8t_A Beclin-1; autophagy, AT 53.2 83 0.0028 24.9 10.1 50 144-193 19-68 (96)
79 2zqm_A Prefoldin beta subunit 53.0 36 0.0012 26.8 6.6 26 167-192 80-105 (117)
80 2xdj_A Uncharacterized protein 52.9 41 0.0014 26.2 6.7 43 146-188 23-65 (83)
81 4dzn_A Coiled-coil peptide CC- 52.6 29 0.001 22.3 4.7 19 159-177 11-29 (33)
82 2wt7_B Transcription factor MA 52.4 38 0.0013 27.0 6.5 38 158-195 49-86 (90)
83 3q0x_A Centriole protein; cent 52.4 21 0.00073 32.9 5.7 47 142-188 177-223 (228)
84 2w6a_A ARF GTPase-activating p 51.7 63 0.0022 24.0 7.0 43 149-191 19-61 (63)
85 1go4_E MAD1 (mitotic arrest de 51.6 58 0.002 26.4 7.6 30 144-173 13-42 (100)
86 1gu4_A CAAT/enhancer binding p 51.5 27 0.00091 27.0 5.3 35 144-178 37-71 (78)
87 3efg_A Protein SLYX homolog; x 51.4 33 0.0011 26.4 5.9 33 161-193 18-50 (78)
88 3ra3_A P1C; coiled coil domain 49.6 16 0.00054 22.8 2.9 24 154-177 4-27 (28)
89 3tnu_A Keratin, type I cytoske 48.7 1.1E+02 0.0038 25.1 11.4 8 166-173 47-54 (131)
90 3viq_B Mating-type switching p 47.9 19 0.00064 28.5 4.0 24 147-170 5-28 (85)
91 4dci_A Uncharacterized protein 47.8 1E+02 0.0035 26.6 9.0 18 185-202 73-90 (150)
92 3o0z_A RHO-associated protein 47.8 1.4E+02 0.0047 26.3 9.9 66 125-191 17-82 (168)
93 3swk_A Vimentin; cytoskeleton, 47.7 96 0.0033 24.0 9.6 63 160-224 3-65 (86)
94 4h22_A Leucine-rich repeat fli 47.2 1.2E+02 0.0039 24.8 10.2 55 132-191 10-64 (103)
95 3m9b_A Proteasome-associated A 47.0 30 0.001 32.4 5.9 25 171-195 61-85 (251)
96 1gd2_E Transcription factor PA 45.9 15 0.00053 27.8 3.1 12 145-156 31-42 (70)
97 3m91_A Proteasome-associated A 45.6 79 0.0027 22.6 6.7 28 161-188 20-47 (51)
98 3ghg_A Fibrinogen alpha chain; 45.2 1.2E+02 0.0041 31.4 10.3 91 126-225 51-141 (562)
99 3nmd_A CGMP dependent protein 45.2 46 0.0016 25.5 5.7 31 152-182 35-65 (72)
100 3iox_A AGI/II, PA; alpha helix 44.7 1.6E+02 0.0054 30.1 11.1 37 162-198 39-75 (497)
101 2lw1_A ABC transporter ATP-bin 44.6 53 0.0018 25.3 6.2 6 149-154 28-33 (89)
102 1sfc_A VAMP 2, protein (synapt 44.6 1.1E+02 0.0039 24.0 9.8 57 141-197 28-84 (96)
103 3mtu_E Head morphogenesis prot 44.5 68 0.0023 24.9 6.6 35 152-186 39-73 (77)
104 3efg_A Protein SLYX homolog; x 44.3 62 0.0021 24.8 6.4 45 143-194 14-58 (78)
105 2fxo_A Myosin heavy chain, car 43.9 1.3E+02 0.0046 24.6 15.0 16 208-223 83-98 (129)
106 3mq9_A Bone marrow stromal ant 43.3 17 0.00059 35.3 3.9 14 124-137 380-393 (471)
107 3he5_A Synzip1; heterodimeric 43.1 81 0.0028 21.9 6.2 22 161-182 7-28 (49)
108 1fxk_A Prefoldin; archaeal pro 43.1 52 0.0018 25.5 6.0 23 169-191 77-99 (107)
109 4gkw_A Spindle assembly abnorm 42.6 1.6E+02 0.0055 25.2 10.5 66 140-205 8-87 (167)
110 2ve7_A Kinetochore protein HEC 42.3 46 0.0016 31.6 6.6 17 125-141 147-163 (315)
111 2wt7_B Transcription factor MA 42.0 56 0.0019 26.0 5.9 38 145-182 50-87 (90)
112 2z5i_A TM, general control pro 41.9 45 0.0015 23.8 4.9 30 160-189 15-44 (52)
113 2z5i_A TM, general control pro 41.8 68 0.0023 22.8 5.9 37 149-185 11-47 (52)
114 3tnu_B Keratin, type II cytosk 41.6 1.4E+02 0.0049 24.3 11.4 32 156-187 35-66 (129)
115 1deq_A Fibrinogen (alpha chain 41.6 2.7E+02 0.0093 27.5 14.9 47 204-251 137-191 (390)
116 3ghg_B Fibrinogen beta chain; 41.6 2.8E+02 0.0095 28.0 12.3 81 122-210 78-158 (461)
117 1ci6_A Transcription factor AT 41.5 67 0.0023 23.4 6.0 34 158-191 24-57 (63)
118 3m91_A Proteasome-associated A 41.4 95 0.0032 22.2 6.5 40 143-182 9-48 (51)
119 1fmh_A General control protein 41.2 44 0.0015 21.5 4.1 26 145-170 3-28 (33)
120 1f5n_A Interferon-induced guan 41.0 3.1E+02 0.011 28.2 13.0 56 167-226 497-552 (592)
121 3m9b_A Proteasome-associated A 40.5 27 0.00093 32.7 4.5 20 168-187 72-91 (251)
122 1i84_S Smooth muscle myosin he 40.3 1.4E+02 0.0047 33.1 10.9 33 158-190 865-897 (1184)
123 2j69_A Bacterial dynamin-like 38.7 1.5E+02 0.0051 30.8 10.3 38 168-205 363-400 (695)
124 4fye_A SIDF, inhibitor of grow 38.6 3.1E+02 0.011 27.4 12.2 80 126-219 495-585 (761)
125 1kd8_A GABH AIV, GCN4 acid bas 38.6 42 0.0014 22.5 3.9 26 146-171 4-29 (36)
126 3mud_A DNA repair protein XRCC 38.2 77 0.0026 28.1 6.8 35 155-189 133-167 (175)
127 4emc_A Monopolin complex subun 38.1 2.1E+02 0.0073 25.6 9.7 41 149-189 12-52 (190)
128 3u1c_A Tropomyosin alpha-1 cha 38.0 1.5E+02 0.0051 23.5 13.3 50 146-195 5-54 (101)
129 4etp_A Kinesin-like protein KA 37.8 85 0.0029 30.7 7.9 39 160-198 6-44 (403)
130 2xdj_A Uncharacterized protein 37.7 1.4E+02 0.0048 23.1 9.4 52 143-194 6-57 (83)
131 4dzn_A Coiled-coil peptide CC- 37.6 80 0.0027 20.3 5.0 23 158-180 3-25 (33)
132 2wuj_A Septum site-determining 36.9 40 0.0014 24.2 4.1 33 146-178 23-55 (57)
133 2oqq_A Transcription factor HY 36.4 1.1E+02 0.0036 21.3 6.2 34 160-193 6-39 (42)
134 2wt7_A Proto-oncogene protein 35.9 1.2E+02 0.0041 21.9 6.6 32 160-191 26-57 (63)
135 3a7o_A Autophagy protein 16; c 35.8 1.5E+02 0.0051 22.8 7.4 49 147-195 22-70 (75)
136 2l5g_B Putative uncharacterize 35.5 78 0.0027 21.9 5.0 25 152-176 11-35 (42)
137 1t2k_D Cyclic-AMP-dependent tr 34.7 1.2E+02 0.004 21.7 6.3 32 160-191 25-56 (61)
138 1i84_S Smooth muscle myosin he 34.7 1.4E+02 0.0046 33.2 9.7 33 145-177 866-898 (1184)
139 3haj_A Human pacsin2 F-BAR; pa 34.6 3.4E+02 0.012 26.6 14.8 48 156-203 184-231 (486)
140 1lwu_C Fibrinogen gamma chain; 34.4 76 0.0026 30.5 6.7 11 254-264 86-96 (323)
141 2eqb_B RAB guanine nucleotide 34.2 1.8E+02 0.0062 23.4 9.8 19 185-203 43-61 (97)
142 3swy_A Cyclic nucleotide-gated 34.1 1.2E+02 0.0041 21.2 6.8 41 148-188 3-43 (46)
143 1urq_A M-tomosyn isoform; tran 33.9 1.4E+02 0.0047 21.9 7.6 53 144-196 5-57 (63)
144 2aze_A Transcription factor DP 33.7 1.1E+02 0.0036 26.8 6.8 41 151-195 6-46 (155)
145 3swf_A CGMP-gated cation chann 33.6 1.1E+02 0.0039 23.5 6.2 44 148-191 5-48 (74)
146 2ve7_A Kinetochore protein HEC 33.6 1E+02 0.0035 29.1 7.5 43 125-168 168-210 (315)
147 3lay_A Zinc resistance-associa 33.4 77 0.0026 27.8 6.1 11 124-134 74-84 (175)
148 3oja_A Leucine-rich immune mol 32.9 3.4E+02 0.012 26.1 12.3 20 178-197 417-436 (487)
149 3iox_A AGI/II, PA; alpha helix 32.2 87 0.003 32.0 6.9 15 297-311 232-246 (497)
150 3s9g_A Protein hexim1; cyclin 32.2 2E+02 0.007 23.3 7.8 43 146-188 40-82 (104)
151 3gp4_A Transcriptional regulat 31.8 62 0.0021 26.9 5.0 34 161-194 85-118 (142)
152 3i00_A HIP-I, huntingtin-inter 31.8 2.2E+02 0.0074 23.5 8.6 24 170-193 39-62 (120)
153 3swk_A Vimentin; cytoskeleton, 31.6 1.8E+02 0.0061 22.5 7.5 37 145-181 2-38 (86)
154 2pih_A Protein YMCA; regulate 31.5 2.3E+02 0.0079 23.7 11.3 20 172-191 41-60 (151)
155 1kd8_B GABH BLL, GCN4 acid bas 31.2 1.1E+02 0.0038 20.5 5.0 22 162-183 6-27 (36)
156 2oxj_A Hybrid alpha/beta pepti 31.1 82 0.0028 20.8 4.3 19 165-183 9-27 (34)
157 2lw1_A ABC transporter ATP-bin 30.8 1.4E+02 0.0049 22.8 6.6 22 152-173 24-45 (89)
158 3aco_A Pacsin2, protein kinase 30.3 3.3E+02 0.011 25.2 13.8 45 157-201 192-236 (350)
159 3u06_A Protein claret segregat 30.1 1.7E+02 0.0058 28.7 8.6 40 158-197 4-43 (412)
160 1gk4_A Vimentin; intermediate 29.9 1.8E+02 0.0063 22.1 10.5 45 160-204 4-48 (84)
161 1fzc_C Fibrin; blood coagulati 29.9 38 0.0013 32.5 3.8 11 254-264 76-86 (319)
162 1gk6_A Vimentin; intermediate 29.6 1.6E+02 0.0053 21.2 7.3 41 162-202 5-48 (59)
163 1deq_A Fibrinogen (alpha chain 29.5 3.6E+02 0.012 26.7 10.6 34 161-194 117-150 (390)
164 3mov_A Lamin-B1; LMNB1, B-type 29.1 2.1E+02 0.0073 22.5 10.2 40 160-199 40-82 (95)
165 2x3v_A Syndapin I, protein kin 28.9 3.4E+02 0.012 24.8 15.3 42 159-200 185-226 (337)
166 3mq9_A Bone marrow stromal ant 28.8 74 0.0025 30.8 5.7 41 148-188 395-435 (471)
167 3viq_B Mating-type switching p 28.6 1.5E+02 0.0052 23.3 6.4 15 162-176 6-20 (85)
168 3cvf_A Homer-3, homer protein 28.6 2E+02 0.007 22.2 9.1 38 156-193 5-42 (79)
169 3lay_A Zinc resistance-associa 28.1 3E+02 0.01 24.0 10.7 34 142-175 70-103 (175)
170 3r2p_A Apolipoprotein A-I; amp 27.6 1.7E+02 0.0058 25.2 7.3 126 115-254 1-133 (185)
171 3w03_C DNA repair protein XRCC 27.6 1.2E+02 0.0042 26.9 6.4 36 161-196 149-184 (184)
172 1cii_A Colicin IA; bacteriocin 27.5 5.2E+02 0.018 26.5 13.9 50 144-193 357-406 (602)
173 3i00_A HIP-I, huntingtin-inter 27.2 2.6E+02 0.009 23.0 8.0 40 162-201 20-59 (120)
174 3a7o_A Autophagy protein 16; c 27.2 1.8E+02 0.0061 22.3 6.3 39 146-184 35-73 (75)
175 2l5g_B Putative uncharacterize 26.3 1.2E+02 0.0042 20.9 4.8 29 144-172 10-38 (42)
176 1g6u_A Domain swapped dimer; d 26.1 72 0.0024 22.0 3.5 6 169-174 32-37 (48)
177 3gp4_A Transcriptional regulat 26.1 2.8E+02 0.0094 22.9 9.3 9 144-152 61-69 (142)
178 1g6u_A Domain swapped dimer; d 25.4 1.7E+02 0.0058 20.2 6.2 20 144-163 21-40 (48)
179 2wq1_A General control protein 25.3 1.1E+02 0.0038 20.1 4.2 21 156-176 6-26 (33)
180 3frt_A Charged multivesicular 25.2 3.8E+02 0.013 24.1 10.2 30 239-269 117-146 (218)
181 2eqb_B RAB guanine nucleotide 25.1 2.7E+02 0.0092 22.4 10.3 30 159-188 7-36 (97)
182 1zxa_A CGMP-dependent protein 25.0 85 0.0029 23.7 4.2 26 159-184 27-52 (67)
183 4e61_A Protein BIM1; EB1-like 25.0 2.8E+02 0.0096 22.6 10.4 25 155-179 9-33 (106)
184 3a6m_A Protein GRPE, HSP-70 co 24.6 85 0.0029 27.5 4.8 41 152-195 28-68 (177)
185 1fxk_A Prefoldin; archaeal pro 24.5 2E+02 0.0068 22.0 6.6 29 149-177 71-99 (107)
186 1nfn_A Apolipoprotein E3; lipi 24.3 3.6E+02 0.012 23.5 9.6 92 121-220 24-122 (191)
187 3cve_A Homer protein homolog 1 24.2 2.4E+02 0.0081 21.5 8.7 31 161-191 4-34 (72)
188 1jnm_A Proto-oncogene C-JUN; B 24.2 90 0.0031 22.5 4.1 33 159-191 24-56 (62)
189 1s94_A S-syntaxin; three helix 24.1 3.2E+02 0.011 23.0 10.5 131 123-255 4-142 (180)
190 3m48_A General control protein 24.1 99 0.0034 20.4 3.7 20 157-176 7-26 (33)
191 2avr_X Adhesion A; antiparalle 24.0 3.1E+02 0.011 22.8 10.5 16 147-162 6-21 (119)
192 3oa7_A Head morphogenesis prot 24.0 1.6E+02 0.0055 26.7 6.4 51 143-193 30-86 (206)
193 3mud_A DNA repair protein XRCC 23.8 1.4E+02 0.0049 26.4 6.1 39 150-188 135-173 (175)
194 2wuj_A Septum site-determining 23.5 69 0.0023 23.0 3.3 24 148-171 32-55 (57)
195 1n7s_A Vesicle-associated memb 23.4 2.1E+02 0.0071 20.5 9.9 54 143-196 4-57 (63)
196 3v86_A De novo design helix; c 23.4 89 0.0031 19.3 3.2 22 155-176 5-26 (27)
197 1gl2_A Endobrevin; membrane pr 23.3 2.1E+02 0.0073 20.6 7.5 54 143-196 9-62 (65)
198 2pjw_H Uncharacterized protein 22.7 2.8E+02 0.0095 21.7 9.7 68 124-191 10-83 (88)
199 4dzo_A Mitotic spindle assembl 22.4 1.2E+02 0.0043 25.0 5.1 10 161-170 8-17 (123)
200 3mxz_A Tubulin-specific chaper 22.4 3.2E+02 0.011 22.3 9.7 67 161-227 19-86 (116)
201 3haj_A Human pacsin2 F-BAR; pa 22.2 5.6E+02 0.019 25.1 15.0 16 241-256 263-278 (486)
202 1ez3_A Syntaxin-1A; three heli 22.2 2.9E+02 0.0098 21.7 12.3 15 241-255 97-111 (127)
203 2b9c_A Striated-muscle alpha t 22.0 3.6E+02 0.012 22.8 8.8 34 141-174 50-83 (147)
204 3t98_B Nucleoporin NUP58/NUP45 22.0 2.1E+02 0.0073 22.5 6.2 22 160-181 61-82 (93)
205 1gmj_A ATPase inhibitor; coile 21.9 2.9E+02 0.0099 21.7 8.5 24 171-194 51-74 (84)
206 3mtu_A Tropomyosin alpha-1 cha 21.6 2E+02 0.007 21.6 5.8 28 145-172 4-31 (75)
207 3cl3_D NF-kappa-B essential mo 21.6 3.5E+02 0.012 22.9 7.6 17 173-189 85-101 (130)
208 2w83_C C-JUN-amino-terminal ki 21.4 1.9E+02 0.0064 22.4 5.5 13 126-138 11-23 (77)
209 4b4t_J 26S protease regulatory 21.2 97 0.0033 30.6 4.9 13 285-297 109-121 (405)
210 3b5n_A Synaptobrevin homolog 1 20.6 2.4E+02 0.008 20.1 9.3 54 144-197 3-56 (61)
211 1hjb_A Ccaat/enhancer binding 20.4 2.6E+02 0.0089 21.8 6.3 31 161-191 40-70 (87)
212 3t97_B Nuclear pore complex pr 20.1 2.8E+02 0.0095 20.8 7.7 21 165-185 32-52 (65)
No 1
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=100.00 E-value=6.5e-46 Score=342.02 Aligned_cols=153 Identities=39% Similarity=0.644 Sum_probs=143.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhh
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~ 238 (347)
+..|+.+|..|++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.++.. ......+.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~-~~~~~~l~ 139 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETD-NEQAKSIL 139 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSC-CSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc-cccHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999987642 23456899
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA 312 (347)
Q Consensus 239 eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk 312 (347)
+||.||+++|.++|.++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|++
T Consensus 140 eGvemi~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va~ 213 (213)
T 4ani_A 140 QGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRVLRPAMVKVSQ 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSCSSSEEEEEECCCEETTSCCSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCCCCcEEEEEeCCeEECCEEeeceEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=100.00 E-value=5.5e-47 Score=340.68 Aligned_cols=160 Identities=33% Similarity=0.503 Sum_probs=145.1
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhh
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKV 229 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~ 229 (347)
+.+..++.+...++.++..+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+++...
T Consensus 12 ~~~~~~~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~ 91 (177)
T 3a6m_A 12 KDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEA 91 (177)
T ss_dssp GGGTTTHHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Confidence 34445555666666677788888999999999999999999999999999999999999999999999999999987642
Q ss_pred cccchHhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEE
Q 019043 230 QTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVK 309 (347)
Q Consensus 230 e~e~~~~l~eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~ 309 (347)
+.+.+.+||+||+++|.++|+++||+.|+++|++|||++|+||+++++ ++|||++|+|+||+|||||||||||+
T Consensus 92 ---~~~~l~~Gv~m~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~---~~gtVv~v~qkGY~l~dRvLRpA~V~ 165 (177)
T 3a6m_A 92 ---SPESIRQGVRAIRDGFFRILAGLGVEEVPGEGEAFDPRYHEAVGLLPG---EPGKVAKVFQRGFRMGEALVRPARVA 165 (177)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTTCEECCCTTSBCCTTTEEEEEEEES---STTBEEEEEECCEEETTEEEECEEEE
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhhhhcccC---CcCeEEEEeecCeeeCCEEecCeEEE
Confidence 256789999999999999999999999999999999999999999987 79999999999999999999999999
Q ss_pred eecCCC
Q 019043 310 VSAGPG 315 (347)
Q Consensus 310 Vsk~P~ 315 (347)
|+++++
T Consensus 166 V~~~~~ 171 (177)
T 3a6m_A 166 VGEEKR 171 (177)
T ss_dssp EEECCC
T ss_pred EeCCCC
Confidence 999653
No 3
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=100.00 E-value=9.9e-46 Score=337.39 Aligned_cols=150 Identities=26% Similarity=0.443 Sum_probs=133.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSY 241 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~ 241 (347)
|+.++..+++ +++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+..........+.+||
T Consensus 47 l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~l~~Gv 123 (197)
T 1dkg_A 47 LEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEDI 123 (197)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC------CHHHHHHH
T ss_pred HHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccchHHHHHHHH
Confidence 4444444433 3678999999999999999999999999999999999999999999999987643323346789999
Q ss_pred HHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecCC
Q 019043 242 QSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGP 314 (347)
Q Consensus 242 ~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P 314 (347)
.||+++|.++|+++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|++++
T Consensus 124 ~~~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRvLRpA~V~V~~~~ 196 (197)
T 1dkg_A 124 ELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAK 196 (197)
T ss_dssp HHHHHHHHHHHTTTTEEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEEECEEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhheeeeecCCCCCcCeEEEEeeCCeeeCCEEecceEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999854
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.51 E-value=1.5 Score=39.53 Aligned_cols=80 Identities=23% Similarity=0.154 Sum_probs=40.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhHHHHHh
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN--AQGEVMERLLQVLDNFERAKT 225 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~--A~e~ll~dLLpVlDnLErAl~ 225 (347)
+|.+|...++....|..++..|..++..+|.+|.....++.+.-..++++...++.. ....-|.+|=-.-|+|+|+.-
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444555555555555555555555555555444444444443333321 123335566666778887755
Q ss_pred hh
Q 019043 226 QI 227 (347)
Q Consensus 226 ~~ 227 (347)
+.
T Consensus 127 ~~ 128 (189)
T 2v71_A 127 AT 128 (189)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 5
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=88.74 E-value=2.2 Score=30.19 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=32.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~ 201 (347)
++++++..++.-++-++-++.|+.|+|+....++.+-+..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888899999999999999888877655443
No 6
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=88.04 E-value=3.1 Score=32.29 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=35.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
++++++..|+.-++-++-++.|++|+|+...+++.+-+..+..+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888899999999999999988887766555443
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.01 E-value=15 Score=33.09 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHH----HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKID----LERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (347)
Q Consensus 124 ~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~----L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e 199 (347)
++..+-|..||+-+. .-..++.+++.++...+..-.+ |+.+|..+++.+.+++.+..++.-|++.+|.+...-..
T Consensus 6 ~s~~ee~~ywk~~~~-~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 6 SSLKEETAYWKELSM-KYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777775443 2234566777777766665444 45567789999999999999999999999999876655
Q ss_pred HHH--HHHHHHHHHHHhhhhhhHHHHHhhh
Q 019043 200 SLV--TNAQGEVMERLLQVLDNFERAKTQI 227 (347)
Q Consensus 200 ~~~--~~A~e~ll~dLLpVlDnLErAl~~~ 227 (347)
+.. ...++.=+..|-...+.+..-+-.+
T Consensus 85 e~~~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 2234444556666666666555444
No 8
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.44 E-value=4.3 Score=34.59 Aligned_cols=47 Identities=11% Similarity=0.277 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
...++.++.....|+.+|+.++..++.++.+++..+..++.++.-+.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433333
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.33 E-value=7.9 Score=35.45 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=21.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+..++..+++++..++..+..++.++.+++..+.++..+++..+.|.
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri 76 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI 76 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444333
No 10
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.51 E-value=13 Score=30.83 Aligned_cols=71 Identities=20% Similarity=0.121 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhHHHHHhhh
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN--AQGEVMERLLQVLDNFERAKTQI 227 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~--A~e~ll~dLLpVlDnLErAl~~~ 227 (347)
+...+|+.++..|.-++.++|.||...+.+-.+....+++|...++.. -+..-+++|=-.=|+|+|+.-+.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 344567788888888888888998888888777777777777665543 24455677888889999986543
No 11
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=85.11 E-value=9.9 Score=31.87 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=26.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 019043 176 ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (347)
Q Consensus 176 lkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErA 223 (347)
+++.|..+.++++++++-+++++. ..=-+||||+++
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ik------------~qekiIdnFE~i 104 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAEME------------QQKAVISDFEKI 104 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Confidence 667777888888888877777643 344578999875
No 12
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=85.05 E-value=3.5 Score=28.74 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
++++|.++.++++|...|+ +..-.-||-+..+..++.|+||+++
T Consensus 5 vaqlenevaslenenetlk-------kknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 5 VAQLENEVASLENENETLK-------KKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccHHHH-------HhcccHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666665555444 4444456777888889999998764
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.99 E-value=23 Score=32.35 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhCCCeeec---CCC--CCCCcccccee
Q 019043 240 SYQSIYKQLVEILGSLGVVPVE---TVG--NPFDPLLHEAI 275 (347)
Q Consensus 240 g~~~I~kqL~~iL~k~GVe~I~---~vG--e~FDP~lHEAV 275 (347)
.+-..|..+.+.....||..|. |-| -..+|..+..|
T Consensus 176 ~lL~~Yerir~~~~g~avv~v~~~~C~GC~~~lppq~~~~i 216 (256)
T 3na7_A 176 KIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLNDKIYTEV 216 (256)
T ss_dssp HHHHHHHHHHHHHGGGSEEECBTTBCTTTCCBCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEeeCCccCCCCeeeCHHHHHHH
Confidence 3444556655555667777775 233 24455554333
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.84 E-value=7 Score=30.75 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=2.8
Q ss_pred HHHHhhh
Q 019043 210 MERLLQV 216 (347)
Q Consensus 210 l~dLLpV 216 (347)
+..||.-
T Consensus 71 l~~LLgk 77 (81)
T 2jee_A 71 LQALLGR 77 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3344433
No 15
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=82.02 E-value=7.5 Score=35.05 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 129 TLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 129 ~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
.|-.||.++.. .+..-...+..+..|...|.+++.....+++.++.++.-+.++.
T Consensus 3 ~~~~YK~~~q~----ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 3 PLTVYKNSVKQ----QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567766541 12222233444555555555555555555555555554444444
No 16
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.58 E-value=3.8 Score=40.43 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~ 202 (347)
+++.+++.++..++.+..+|+.++..++.++.++++++... +..||++-.+.++++
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~rr~l~n~~~elk 58 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE----ETVRRTLHNELQELR 58 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcC
Confidence 46677788888888888888888888888888877765543 456777776666654
No 17
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.43 E-value=4.2 Score=31.35 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
+.+++..|....+|+...+..|..|++++.+..+.+..++.+++.||
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444455555555555555555555555555553
No 18
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=80.00 E-value=18 Score=27.73 Aligned_cols=61 Identities=26% Similarity=0.309 Sum_probs=42.3
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVME 211 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~ 211 (347)
..+..+..|..+|..++..+++++..+++.-.....-...|++.+..|+ -++..|+.++..
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~-~LK~QAVNKLAE 64 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER-TLKTQAVNKLAE 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455566677777778888887777777666666666668888888876 455666666543
No 19
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=79.13 E-value=9.7 Score=27.51 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN 189 (347)
.+++.+|..++..+-.++..|...+..+..++...|+.-.|+..-++|
T Consensus 3 ~aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 3 NAKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467888888888888888888888888888888888888887777666
No 20
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=79.03 E-value=36 Score=31.50 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=54.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc---cchHhhhhHH
Q 019043 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQT---EGEEKINNSY 241 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~---e~~~~l~eg~ 241 (347)
+|..|+.|+....-..+-.-|.+.|++|+.-||-..++-.|+..+.+.+.=+...=.+.+..++... ...-....|+
T Consensus 132 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ila~~gk~Ll~lldd~pv~PG~~r~~Y~g~ 211 (234)
T 3plt_A 132 KIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLELLDDSPVTPGEARPAYDGY 211 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSSCCCCCCCH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCh
Confidence 3445555555554555566678899999999998888888877777776655544444444432111 0111233444
Q ss_pred H---HHHHHHHHHHHhCC
Q 019043 242 Q---SIYKQLVEILGSLG 256 (347)
Q Consensus 242 ~---~I~kqL~~iL~k~G 256 (347)
. .|.....+.|..|-
T Consensus 212 ~~t~qi~~dAe~~L~~w~ 229 (234)
T 3plt_A 212 EASRQIIMDAESALESWT 229 (234)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcc
Confidence 4 35555556666664
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=77.82 E-value=5.7 Score=33.81 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=24.2
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
++...+.+...|+.++..+.+++..+|..+..++-..++.++..
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~ 112 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI 112 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555443
No 22
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=77.43 E-value=19 Score=30.13 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=27.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 019043 176 ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA 223 (347)
Q Consensus 176 lkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErA 223 (347)
+++.|.-+...|.++++.+++++.. .=-|||||+..
T Consensus 69 yK~eY~~L~KkYk~~~~~Ld~eI~~------------qe~iI~nFe~I 104 (119)
T 2avr_X 69 YKSQYQELASKYEDALKKLEAEMEQ------------QKAVISDFEKI 104 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 6788888888889988888887544 33467888753
No 23
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=76.71 E-value=23 Score=27.15 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=30.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
+...|+.++.+...|+.++..++..+.+-+.+--++++++.++-..+.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666677777777777776666666666666666554443
No 24
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=76.52 E-value=12 Score=26.61 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=34.6
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~ 201 (347)
.+..++....++..++..+..++.+++.++.++..++.++|..+.+-..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556566666777777788888888888888887776654443
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.36 E-value=32 Score=28.51 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=40.5
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
..+.++.-.+..++.++..++.....|+..+.+.+.+|.....++...--.++.++.+++..
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777777777777777777777777766666666666666666555544
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=76.24 E-value=5.8 Score=28.87 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=22.8
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI 180 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~ 180 (347)
.+.+++.....++.+...|..++..|..++..++..+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666666666666666666665443
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=75.88 E-value=8.9 Score=29.43 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=20.9
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
..+..+..+......++..++.++.+...++..+-.++..+.||+
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444444444444444444444445555554444
No 28
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=75.41 E-value=19 Score=26.91 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHhcCCChhhHHHH-HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 123 TSFIMETLQSYKEALASNDDTKAAEI-EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 123 ~~~~~~~l~~~~ea~~~~~e~k~~ei-E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
.+.+..-||+--|.++..+...+... ..++..+......-...+...+.++.+++-.+.++.++++++|
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444445543344443332222221 3344444444444445566667777777777778888877765
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.00 E-value=30 Score=35.65 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhcccc--------hHhhhhHHHHHHHHHHHHHH
Q 019043 204 NAQGEVMERLLQVLDNFERAKTQIKVQTEG--------EEKINNSYQSIYKQLVEILG 253 (347)
Q Consensus 204 ~A~e~ll~dLLpVlDnLErAl~~~~~e~e~--------~~~l~eg~~~I~kqL~~iL~ 253 (347)
.++++.|++++--|-.||.++.. +..... -+--.+.|+.+.|||.++-.
T Consensus 134 rvLQsnLedq~~kIQRLEvDIdi-qirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDIDI-KIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhccccccchheeecchHHHHHHHHHHHHHhh
Confidence 45666666666666667766543 211110 01123578889999988754
No 30
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.89 E-value=36 Score=28.02 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=46.7
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A 205 (347)
.+..+.++.-.+..++.++..++.....|+..+.+.+.+|-....++...-..++.++.+++...
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567777777888888888888888888888888888777777776666666666666555543
No 31
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.80 E-value=21 Score=28.35 Aligned_cols=49 Identities=8% Similarity=0.157 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
.-|...+..+..+......+...++.+++...++...+-.++..++|++
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555555554
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=72.34 E-value=20 Score=28.60 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
.+.++..|..++..++.++...++++.-+.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444433333333
No 33
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=71.85 E-value=11 Score=27.88 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERA 178 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkd 178 (347)
...+++.++..++.+...|+.++..|+.|+..+++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666555543
No 34
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.00 E-value=42 Score=29.23 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=40.1
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
.+..++.++..++.++..++..+....+-+..++|.+.-++.++.-...+..+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888888888887788888888888888887666554443
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.35 E-value=24 Score=35.14 Aligned_cols=15 Identities=0% Similarity=-0.095 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhC
Q 019043 241 YQSIYKQLVEILGSL 255 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~ 255 (347)
...+..++.+.+++.
T Consensus 567 ~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 567 TSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444443
No 36
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.86 E-value=6.8 Score=29.85 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=21.5
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
|..++.++..|+.....+..+...|+..+..+..+..-||
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444444444455555666666666666666665443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.70 E-value=33 Score=34.10 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 019043 128 ETLQSYK 134 (347)
Q Consensus 128 ~~l~~~~ 134 (347)
..++..+
T Consensus 463 ~~i~~l~ 469 (597)
T 3oja_B 463 AEVQQLT 469 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 38
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=68.85 E-value=22 Score=27.78 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=21.5
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
..|+.++.+...|+.++..++..+.+-+.+--++++++.++-..
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555544444444444444433
No 39
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=68.69 E-value=42 Score=26.99 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLS 170 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~ 170 (347)
+...|..|...+..+++|++.+..+.
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444555555555666666555554
No 40
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=68.53 E-value=17 Score=28.62 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=33.9
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 154 SFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 154 ~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
.+.+|+...+..+-..+.++.+.+.+..-+.+++++.+++++.
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777778888888888889999999888865
No 41
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=68.11 E-value=35 Score=26.57 Aligned_cols=14 Identities=0% Similarity=-0.009 Sum_probs=6.6
Q ss_pred HhHHHHHHHHHHHH
Q 019043 184 SADFDNFRKRTEKE 197 (347)
Q Consensus 184 ~ADfEN~RKRtekE 197 (347)
.+|.+..+.|+.+.
T Consensus 58 l~eaEe~~~~L~~~ 71 (89)
T 3bas_A 58 MKQLEDKVEELLSK 71 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 44555555444443
No 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.77 E-value=31 Score=38.22 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=30.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 153 KSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 153 ~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
+..+.|+..++.++..|+++++++++.+.++..+.+.+..+.++-.
T Consensus 973 e~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666677777777777777777777777776665554433
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.71 E-value=15 Score=26.97 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
+.+++.+...++.+...|..+|..|..++..++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555544444443
No 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.68 E-value=99 Score=34.23 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=13.6
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
++..+++++.++++++..+.++.+.+++++.+++
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444434333333
No 45
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=67.31 E-value=25 Score=43.48 Aligned_cols=51 Identities=4% Similarity=0.188 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
.+++++++++...++++.+++++|.+++++++.++++|..+.++.+.++..
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555665566666666666666666666666665555555544443
No 46
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.16 E-value=19 Score=28.52 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=21.4
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILR 182 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lR 182 (347)
+..+++..+..++.|...|+.+|..|+.|+..|+.-++.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666666666666555555554443
No 47
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.61 E-value=9.5 Score=27.45 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERA 178 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkd 178 (347)
|..+|+.++..|.+++++++.
T Consensus 27 E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 48
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=66.40 E-value=58 Score=29.60 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
+..++.++..++.++.+++.++.-+.++..-+ ..|...|.+++++....
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~---RkR~~rE~e~~~~~a~e 109 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENF---RRRTRQEMEAAEKYRAQ 109 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 44555666677777777777776666555444 45555566666555433
No 49
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.17 E-value=23 Score=29.65 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 163 ERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 163 ~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
.+++.+|+.||..++.++.-+.|+.+.+|+-.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566666666666666666667766666544
No 50
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=65.30 E-value=19 Score=24.95 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAE 176 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~el 176 (347)
+.++|...++++....+|++++..|+.|..-+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45666666666666666666666666654433
No 51
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=64.96 E-value=45 Score=25.54 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=34.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVM 210 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll 210 (347)
+...+..+..|..+|..++..+++++..+++.-.. .-...|++.+..|+ -++..|+.++.
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~--~~~~~lek~L~~E~-~LK~QAVNKLA 63 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEKEEEIS--NLKAAFEKNINTER-TLKTQAVNKLA 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44555566666666776666666666555533333 33336777776665 34555555544
No 52
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.79 E-value=19 Score=35.55 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~ 202 (347)
...++.++..+.+++.+++.++..+++++.++++++.. -+..||++..+.++++
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~----~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ----SNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhC
Confidence 35667777777888888888888888777777776543 3566777766665554
No 53
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=63.33 E-value=7.1 Score=28.53 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=18.8
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERAR 179 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk 179 (347)
.+.+++..+..++.+...|..++..|..++..|+..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554433
No 54
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=63.16 E-value=25 Score=28.40 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=24.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
+++.++..++.++..| +.....++.+++|...+..++++|.+-
T Consensus 51 eL~~EI~~L~~eI~~L----E~iqs~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQL----EKMQNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333 244455566777777777777777653
No 55
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=62.75 E-value=48 Score=28.81 Aligned_cols=53 Identities=6% Similarity=0.125 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
..++.+++.++....+-+..+..++..|+-++..+.+++.++++|...+-.|.
T Consensus 81 ~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 81 EQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555566666677777777777777777777777776655443
No 56
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=62.62 E-value=54 Score=25.68 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=10.4
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 166 VVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 166 l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
|.-|+-+++++|++...+..+.++.
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 57
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.50 E-value=11 Score=27.08 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=14.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 166 VVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 166 l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+..|+.|+.+++.++..+.+..+.+++|+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555544
No 58
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=61.89 E-value=33 Score=28.71 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+.+.+|+.+|..|..++.+.-.++.|+.++.+-+.-|+
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 34455555555555555555555666666666555544
No 59
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=61.85 E-value=1.4e+02 Score=30.18 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHH
Q 019043 124 SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKID 161 (347)
Q Consensus 124 ~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~ 161 (347)
=.+.+.|-.|.+-+. ..+.+|+..+.++...-.+
T Consensus 85 C~l~D~L~k~q~~V~----~~LqeLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 85 CELQTTLLKQEKTVK----PVLRDLKDRVAKFSDTSTT 118 (464)
T ss_dssp THHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhhhH----hHHHHHHHHHHHHhhhhhH
Confidence 455666777776543 5566666666666554433
No 60
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=60.53 E-value=68 Score=26.19 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
++.+|+.+|..+..+...+.-++..++...+.||.|++.|.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~ 61 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444444444444444444444444555555555555443
No 61
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=60.21 E-value=69 Score=26.16 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=41.3
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLV 202 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~ 202 (347)
..+.++..+|..+..+...|.-++..++..+++++.||-... |.|...+.++..++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~----~~r~~~E~di~~lr 75 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM----LQREEAENTLQSFR 75 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHhh
Confidence 457778888888888999999999999999999998886433 44554554444443
No 62
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=60.19 E-value=57 Score=25.21 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=14.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFD---NFRKRTEKER 198 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfE---N~RKRtekE~ 198 (347)
++..|..++.++..++....+...|++ |+|-+++.|+
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333444444444444444333333332 3444444443
No 63
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=59.96 E-value=6.8 Score=32.42 Aligned_cols=32 Identities=13% Similarity=0.246 Sum_probs=4.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019043 177 RARILRISADFDNFRKRTEKERLSLVTNAQGE 208 (347)
Q Consensus 177 kdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ 208 (347)
...+.....+|+.+++..+++...........
T Consensus 66 ~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~ 97 (143)
T 1u2m_A 66 EKDVMAQRQTFAQKAQAFEQDRARRSNEERGK 97 (143)
T ss_dssp ---------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666555555554444433333
No 64
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=59.72 E-value=32 Score=24.95 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
..+..++.++..++.++...-.+.+++-+-.+++-.|+.-|||-+
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333344444444444444444444444444445555555555443
No 65
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=59.21 E-value=75 Score=26.23 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=20.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
..|..|...+.++.+|+.++..+.+.+ +.+.-+.+..+=||.....|
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aE 81 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAE 81 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccc
Confidence 334444444555555555555544422 23333344444444443333
No 66
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=58.76 E-value=66 Score=25.42 Aligned_cols=11 Identities=36% Similarity=0.132 Sum_probs=4.1
Q ss_pred HHHHHHHHhhh
Q 019043 145 AAEIEALLKSF 155 (347)
Q Consensus 145 ~~eiE~~l~~~ 155 (347)
+.+++..++..
T Consensus 25 ae~~e~~~k~~ 35 (101)
T 3u59_A 25 AEQAEADKKQA 35 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.51 E-value=72 Score=31.03 Aligned_cols=20 Identities=10% Similarity=0.136 Sum_probs=9.0
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 019043 180 ILRISADFDNFRKRTEKERL 199 (347)
Q Consensus 180 ~lRl~ADfEN~RKRtekE~e 199 (347)
..|...+++.++.+.++.++
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 430 QNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhhhhhhhHHHHHHH
Confidence 33344455555444444333
No 68
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=58.03 E-value=57 Score=25.57 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
+++|...-+.+|..-++++..++.++.-.-|++.++.
T Consensus 38 lEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 38 LENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333333444444444444444444444444443
No 69
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.89 E-value=35 Score=26.76 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
|++.|+-++.+++.|.-+..-++.-..+++.-+++.+
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444555555555554444444444445555554443
No 70
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=57.67 E-value=69 Score=25.36 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
+..++.+|..+..+...|.++|..++++-..+...+..+.++.+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666665555555554444444
No 71
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=57.65 E-value=57 Score=24.87 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 019043 189 NFRKRTEKER 198 (347)
Q Consensus 189 N~RKRtekE~ 198 (347)
|+|-+++.|+
T Consensus 40 niKl~Le~EI 49 (74)
T 2xv5_A 40 DIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 72
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=57.53 E-value=64 Score=24.93 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=30.8
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
.+.++...+..++.++..++.++...-.+..++-+-.+++-.|+.-|||-++-
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 44444555555555555555555555555555666666666777777766543
No 73
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=55.46 E-value=72 Score=24.87 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=44.0
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERL 199 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e 199 (347)
...++..+..++.++..-..+--+++-+-.+.++.+.++-..+...-..|++...+-+.
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~r 61 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 61 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677778888777776655555566677778888888888889999999988766543
No 74
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.83 E-value=52 Score=40.82 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=19.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
+++|..+++++.+++++|..|+++.++...+..++..+.+...+|
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433
No 75
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=54.65 E-value=93 Score=25.92 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=7.1
Q ss_pred HHHHHHhhhhhHHHHH
Q 019043 147 EIEALLKSFEDEKIDL 162 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L 162 (347)
.|+..+..++.+...|
T Consensus 6 ~i~~~l~~Leae~q~L 21 (119)
T 3etw_A 6 SLVGELQALDAEYQNL 21 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 76
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=54.45 E-value=68 Score=24.42 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
..++...+..++.++..++.++.....+.+++-+-.+++-.|+.-|||-++-|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555555666666666666655666666677777777888888766543
No 77
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=53.63 E-value=67 Score=24.63 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=15.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHH
Q 019043 163 ERKVVNLSEELSAERARILRISADFD---NFRKRTEKER 198 (347)
Q Consensus 163 ~~~l~~L~~el~elkdk~lRl~ADfE---N~RKRtekE~ 198 (347)
+..|..++.++..++....|...|++ |+|-+++.|+
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444444444444444443333333 3444444443
No 78
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=53.21 E-value=83 Score=24.90 Aligned_cols=50 Identities=8% Similarity=0.212 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
..+.+-.+|..++.+...+..+|..++.+...+...-.+...++..|++.
T Consensus 19 eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 19 EEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445566667777777777777777777766666555555555555543
No 79
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=53.01 E-value=36 Score=26.84 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHH
Q 019043 167 VNLSEELSAERARILRISADFDNFRK 192 (347)
Q Consensus 167 ~~L~~el~elkdk~lRl~ADfEN~RK 192 (347)
..++.+++.+..++..+...+.+++.
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444333
No 80
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.88 E-value=41 Score=26.25 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
.++-.+|..++.|+..|...++.+.-++..++.+-.-...|++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555444444444
No 81
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=52.60 E-value=29 Score=22.33 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=7.7
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 019043 159 KIDLERKVVNLSEELSAER 177 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elk 177 (347)
+..|+++|..|+=++..+|
T Consensus 11 iaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 11 IAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 82
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=52.43 E-value=38 Score=26.97 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
++..|+.+...|..++..++....++..+.+.|+.+++
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666677777777776654
No 83
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=52.38 E-value=21 Score=32.88 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
+++...++..|...+.|.+.+...++....+++++++.|-|..-+++
T Consensus 177 K~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T 3q0x_A 177 KGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQ 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 35777788888888888888888888888888888888887776653
No 84
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=51.67 E-value=63 Score=24.05 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=24.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
+..|...+..+..|.+-...+.+|+.-++.++..++.+--|+|
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3334444444444544455556666666666666677766666
No 85
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.65 E-value=58 Score=26.39 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEEL 173 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el 173 (347)
.+..+..++..++.|...|.+++..|+-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555556655555555444
No 86
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.52 E-value=27 Score=27.04 Aligned_cols=35 Identities=31% Similarity=0.366 Sum_probs=19.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERA 178 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkd 178 (347)
+..+++..+..++.|...|+.+|..|..|+..|+.
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555656666666655555555543
No 87
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=51.43 E-value=33 Score=26.36 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
+|+.+++=++.-+.++++-+.+.+.+++.++++
T Consensus 18 ~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~q 50 (78)
T 3efg_A 18 ELETRLSFQEQALTELSEALADARLTGARNAEL 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444433
No 88
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=49.57 E-value=16 Score=22.81 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 154 SFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 154 ~~e~E~~~L~~~l~~L~~el~elk 177 (347)
.++=|...|+++|..|++.+..+|
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 344455667777777777766654
No 89
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.72 E-value=1.1e+02 Score=25.10 Aligned_cols=8 Identities=50% Similarity=0.542 Sum_probs=2.8
Q ss_pred HHhHHHHH
Q 019043 166 VVNLSEEL 173 (347)
Q Consensus 166 l~~L~~el 173 (347)
|..|+.++
T Consensus 47 iq~L~~el 54 (131)
T 3tnu_A 47 MQNLEIEL 54 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 90
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=47.89 E-value=19 Score=28.54 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=10.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLS 170 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~ 170 (347)
.|++.+..++++...|+.++..+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 91
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=47.79 E-value=1e+02 Score=26.59 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 019043 185 ADFDNFRKRTEKERLSLV 202 (347)
Q Consensus 185 ADfEN~RKRtekE~e~~~ 202 (347)
+..+++|....+++....
T Consensus 73 ~qi~~iq~q~~~ek~~r~ 90 (150)
T 4dci_A 73 EQVANIQQQVAGKRSELE 90 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334566666666655533
No 92
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=47.77 E-value=1.4e+02 Score=26.33 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 125 ~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
.+.+.|+..-++... -....+++...+..++....+|+.++..|......+...+..+++.++.=|
T Consensus 17 E~n~kLk~EsE~~~r-lkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 17 EANDLLRTESDTAVR-LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444330 011222333444455555566666666666666666666666666665444
No 93
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.73 E-value=96 Score=24.03 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=37.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl 224 (347)
.+|+.+|..+..+...+.-.+-.++...+.||.+++.|... ....+.=+..|=..+|+.-.+.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~--R~~~E~d~~~LrkdvD~a~l~r 65 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ--REEAENTLQSFRQDVDNASLAR 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHH
Confidence 45555665655555555555666667777777777665432 3344555556666677665554
No 94
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=47.23 E-value=1.2e+02 Score=24.83 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=29.2
Q ss_pred HHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 132 SYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 132 ~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
.|+.|.. ..+++-++-..+.=++.-|+.+++++++.+.+++-.+....-+++..|
T Consensus 10 KyrKAMV-----snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~K 64 (103)
T 4h22_A 10 KYKKAMV-----SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREK 64 (103)
T ss_dssp THHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655 345555554455555555555555555555555555555544444444
No 95
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=46.96 E-value=30 Score=32.40 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 171 EELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 171 ~el~elkdk~lRl~ADfEN~RKRte 195 (347)
.++..+..+..++.+.+.++|+.+.
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~ 85 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLL 85 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444443333
No 96
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.90 E-value=15 Score=27.85 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=4.6
Q ss_pred HHHHHHHHhhhh
Q 019043 145 AAEIEALLKSFE 156 (347)
Q Consensus 145 ~~eiE~~l~~~e 156 (347)
+.++|.++..++
T Consensus 31 i~~LE~~v~~le 42 (70)
T 1gd2_E 31 LKALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 97
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=45.65 E-value=79 Score=22.55 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=11.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
.|..+...|.+-+.+.++++..+.++.+
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444443
No 98
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.18 E-value=1.2e+02 Score=31.37 Aligned_cols=91 Identities=13% Similarity=0.190 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019043 126 IMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (347)
Q Consensus 126 ~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A 205 (347)
|+.+|-....- ....|.+|.+++.+++.-..+..+-+..+.+ .++.++.... +.+|....+..|++.-+.|.
T Consensus 51 LQglLdkqErD----ltkrINELKnqLEdlsKnsKdseqy~k~~~E---~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyL 122 (562)
T 3ghg_A 51 MKGLIDEVNQD----FTNRINKLKNSLFEYQKNNKDSHSLTTNIME---ILRGDFSSAN-NRDNTYNRVSEDLRSRIEVL 122 (562)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH---TTSSHHHHHH-HHHHHHHHTTHHHHHHHHHH
T ss_pred hhhhHHhhcCc----HHHHHHHHHHHHHHHHhhchhHHHHHHHHHH---HHHHHHHhhh-ccchhHHHHHHHHHHHHHHH
Confidence 45555444432 2356777777777765544444443333332 2333334444 77776666666666666666
Q ss_pred HHHHHHHHhhhhhhHHHHHh
Q 019043 206 QGEVMERLLQVLDNFERAKT 225 (347)
Q Consensus 206 ~e~ll~dLLpVlDnLErAl~ 225 (347)
..+|...| --|..|+..+.
T Consensus 123 KekVdnQl-snIrvLQsnLe 141 (562)
T 3ghg_A 123 KRKVIEKV-QHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 55555555 44444444433
No 99
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.17 E-value=46 Score=25.53 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=16.8
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILR 182 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lR 182 (347)
|...+..+..|+.+|.+++.++.+|+.++-.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555566666666666555543
No 100
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=44.68 E-value=1.6e+02 Score=30.09 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=16.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
.+.+-+.+++|...++.+...+.|+++.-..+.++++
T Consensus 39 ~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dl 75 (497)
T 3iox_A 39 NNAANAALTAENTAIKKRNADAKADYEAKLAKYQADL 75 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555555555555444333333333
No 101
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=44.65 E-value=53 Score=25.32 Aligned_cols=6 Identities=33% Similarity=0.501 Sum_probs=2.1
Q ss_pred HHHHhh
Q 019043 149 EALLKS 154 (347)
Q Consensus 149 E~~l~~ 154 (347)
+..|..
T Consensus 28 e~~Ie~ 33 (89)
T 2lw1_A 28 PQLLED 33 (89)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 102
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=44.60 E-value=1.1e+02 Score=24.03 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
...++..+..+|.++.....+--+++-+--+.|+.|.++-..+...-..|++...+-
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl 84 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL 84 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888887776666666777777888889999999999999999887654
No 103
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=44.53 E-value=68 Score=24.92 Aligned_cols=35 Identities=29% Similarity=0.216 Sum_probs=14.2
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISAD 186 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~AD 186 (347)
--.+++++.+|+.++...+.+...+.+.+.+...+
T Consensus 39 ~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~E 73 (77)
T 3mtu_E 39 YGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333333333333
No 104
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=44.35 E-value=62 Score=24.82 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
..+.++|..+.-.+.-+.+|...+...+.++..+ ...+..++.|+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L-------~~ql~~L~~rl 58 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARN-------AELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4556666666666666666655555555555444 44555555444
No 105
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=43.91 E-value=1.3e+02 Score=24.60 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=7.1
Q ss_pred HHHHHHhhhhhhHHHH
Q 019043 208 EVMERLLQVLDNFERA 223 (347)
Q Consensus 208 ~ll~dLLpVlDnLErA 223 (347)
..+.+|-.=++..+..
T Consensus 83 ~~l~el~~rleeeee~ 98 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 106
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.32 E-value=17 Score=35.31 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHh
Q 019043 124 SFIMETLQSYKEAL 137 (347)
Q Consensus 124 ~~~~~~l~~~~ea~ 137 (347)
..+..+|..++.-.
T Consensus 380 ~~i~~~l~~~~~~~ 393 (471)
T 3mq9_A 380 TRITAARDGLRAVM 393 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 44555555555443
No 107
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=43.09 E-value=81 Score=21.86 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=13.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILR 182 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lR 182 (347)
.|+.+++.|+.+...+|.+.+.
T Consensus 7 qlenevaslenenetlkkknlh 28 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLH 28 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhccc
Confidence 3555666666776666665543
No 108
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.06 E-value=52 Score=25.46 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 019043 169 LSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 169 L~~el~elkdk~lRl~ADfEN~R 191 (347)
++.+++.+..++..+...+.+++
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 109
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=42.64 E-value=1.6e+02 Score=25.23 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHHhhhhhHHHHHHHHH--------------HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019043 140 NDDTKAAEIEALLKSFEDEKIDLERKV--------------VNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (347)
Q Consensus 140 ~~e~k~~eiE~~l~~~e~E~~~L~~~l--------------~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A 205 (347)
+-+..++++++.+.+++.+..+-+.++ ..+++...--+..+-+++|++.-+.+..+|--..++.+.
T Consensus 8 ~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~ 87 (167)
T 4gkw_A 8 DKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNS 87 (167)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 344566677777666666655444433 344444444455567788888777777766555554444
No 110
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=42.26 E-value=46 Score=31.55 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHhcCCC
Q 019043 125 FIMETLQSYKEALASND 141 (347)
Q Consensus 125 ~~~~~l~~~~ea~~~~~ 141 (347)
...-+.+.|+--+..++
T Consensus 147 ~~~y~~~~Y~~fl~~~d 163 (315)
T 2ve7_A 147 FLDYTIKCYESFMSGAD 163 (315)
T ss_dssp HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 45566688887777654
No 111
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=41.96 E-value=56 Score=26.01 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILR 182 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lR 182 (347)
..++|.+...+..++..|..++..+..+++.+|.+|..
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666643
No 112
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=41.92 E-value=45 Score=23.76 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDN 189 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN 189 (347)
.+|++.|..|+.++...|++|.-+..++++
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444445555555555555555443
No 113
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=41.84 E-value=68 Score=22.80 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=15.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISA 185 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~A 185 (347)
|..+..+++++.+|+.++..-+.+...+.+.+.....
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~ 47 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALN 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333
No 114
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.62 E-value=1.4e+02 Score=24.32 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADF 187 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADf 187 (347)
..|+.++...|..|+.++..++.....+.+-+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444444444444433333333333
No 115
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.57 E-value=2.7e+02 Score=27.53 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhcccc--------hHhhhhHHHHHHHHHHHH
Q 019043 204 NAQGEVMERLLQVLDNFERAKTQIKVQTEG--------EEKINNSYQSIYKQLVEI 251 (347)
Q Consensus 204 ~A~e~ll~dLLpVlDnLErAl~~~~~e~e~--------~~~l~eg~~~I~kqL~~i 251 (347)
..++..|++++--|-.||.+++.-. .... -+--.+.|+.+.|||..+
T Consensus 137 r~Lq~~l~~q~~kiqRLE~~Id~c~-~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv 191 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLEVDIDIKI-RSCKGSCSRALEHKVDLEDYKNQQKQLEQV 191 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cccccccchhhhhhccHHHHHHHHHHHHhh
Confidence 3455566666666666666653311 1110 011235667777777765
No 116
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=41.57 E-value=2.8e+02 Score=28.04 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=46.3
Q ss_pred CchhHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 122 PTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (347)
Q Consensus 122 ~~~~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~ 201 (347)
+.=.|.+.|-.|...+. ..+.+|+..|.++.+.-.+..+.+..++.-.. +-.+..-+-+++-+...+++++.
T Consensus 78 TtCglad~L~kye~~V~----~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~----~~q~~~~~n~~~~~~s~~mle~~ 149 (461)
T 3ghg_B 78 TGCQLQEALLQQERPIR----NSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQ----KRQKQVKDNENVVNEYSSELEKH 149 (461)
T ss_dssp CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CcchHHHHHHhcccchh----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc----cccCCCCcchhHHHHHHHHHHHH
Confidence 34567888888887664 45666666666555544444433333332221 12233344477777777888887
Q ss_pred HHHHHHHHH
Q 019043 202 VTNAQGEVM 210 (347)
Q Consensus 202 ~~~A~e~ll 210 (347)
..|-.+-++
T Consensus 150 ~~~~~~~~~ 158 (461)
T 3ghg_B 150 QLYIDETVN 158 (461)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHhhhh
Confidence 777554443
No 117
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.45 E-value=67 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
+...|+.++..|+.+..+|+.++..+..+...+|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666665554
No 118
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.35 E-value=95 Score=22.15 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=19.8
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILR 182 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lR 182 (347)
.+..++..++..+......|.+-+.....+|..+++.+.+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555544443
No 119
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=41.18 E-value=44 Score=21.51 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLS 170 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~ 170 (347)
++++|+++.+.+.+.-.|++++..|+
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55666666666666666666665554
No 120
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=41.04 E-value=3.1e+02 Score=28.20 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Q 019043 167 VNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQ 226 (347)
Q Consensus 167 ~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~ 226 (347)
+.++++...++++......-+++-+|..+.-+.++.. ++-.+---++...+|++++
T Consensus 497 e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~----kme~~~~~~~~e~~~~~~~ 552 (592)
T 1f5n_A 497 ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE----KMENDRVQLLKEQERTLAL 552 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455444444333333222 3333333344556777665
No 121
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.52 E-value=27 Score=32.68 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHhHH
Q 019043 168 NLSEELSAERARILRISADF 187 (347)
Q Consensus 168 ~L~~el~elkdk~lRl~ADf 187 (347)
.|.++++++++++.+++.++
T Consensus 72 ~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 122
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=40.29 E-value=1.4e+02 Score=33.11 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNF 190 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~ 190 (347)
++..++.++..++..+.+++.++..+..+.+.+
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 123
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=38.66 E-value=1.5e+02 Score=30.85 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019043 168 NLSEELSAERARILRISADFDNFRKRTEKERLSLVTNA 205 (347)
Q Consensus 168 ~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A 205 (347)
.++++++.++..+.++....++++.++.+-..+.....
T Consensus 363 ~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~v 400 (695)
T 2j69_A 363 ELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTI 400 (695)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555544444444433
No 124
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=38.59 E-value=3.1e+02 Score=27.36 Aligned_cols=80 Identities=25% Similarity=0.343 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcC-----------CChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 126 IMETLQSYKEALAS-----------NDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 126 ~~~~l~~~~ea~~~-----------~~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+++.-.+|+||+.+ =+.+++.++..++.-.++-+.+-+..|-+|..++..+ ||-.
T Consensus 495 lkevkgayrealfsyfeeyqkgegkwdqakldqlknqvdgyeksikkqesaiyelhnqidal--------------rkay 560 (761)
T 4fye_A 495 LKEVKGAYREALFSYFEEYQKGEGKWDQAKLDQLKNQVDGYEKSIKKQESAIYELHNQIDAL--------------RKAY 560 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 34444678888742 2346777777776666665555555555555555444 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 019043 195 EKERLSLVTNAQGEVMERLLQVLDN 219 (347)
Q Consensus 195 ekE~e~~~~~A~e~ll~dLLpVlDn 219 (347)
--|-...+..|++.+-+++-||+.|
T Consensus 561 ytehkgqinkalqelkeqispviqn 585 (761)
T 4fye_A 561 YTEHKGQINKALQELKEQISPVIQN 585 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHHHHHHHHhcChhhcC
Confidence 3444444455666666666677655
No 125
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=38.56 E-value=42 Score=22.52 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=11.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSE 171 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~ 171 (347)
.++|.++..+-.++..|+.++..|++
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 126
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=38.23 E-value=77 Score=28.12 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN 189 (347)
.+....+|+.++..|+.++...|++|..++.+++.
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666666666665543
No 127
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.13 E-value=2.1e+02 Score=25.63 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=14.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDN 189 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN 189 (347)
+++|.....-+.+|..++..|..+++...+++..++...+.
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~s 52 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDS 52 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555544443333333333333
No 128
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=38.01 E-value=1.5e+02 Score=23.46 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
.-|...+..+..+......+...++.+++...++...+-.++..+.||++
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555556666666666666666666666666666666666666654
No 129
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.78 E-value=85 Score=30.71 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKER 198 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~ 198 (347)
..++.++..|+++..+++.++..+.++++.++.++.++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555443
No 130
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=37.73 E-value=1.4e+02 Score=23.12 Aligned_cols=52 Identities=10% Similarity=0.244 Sum_probs=31.6
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
.++..+|..+.....-..+|..+|..++.++..++..+-...-+++.+++|.
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455555444333333456677777777777777777766666666666554
No 131
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=37.65 E-value=80 Score=20.27 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARI 180 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~ 180 (347)
|+..|+++|..|++++..+|=.+
T Consensus 3 eiaalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777776665443
No 132
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=36.94 E-value=40 Score=24.21 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERA 178 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkd 178 (347)
.+..+.|..+.++...|..++..|++++..+++
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666666555555555555544
No 133
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=36.38 E-value=1.1e+02 Score=21.25 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=21.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
.+|+.+..+|+....++.+++.-++.|-.=+|+-
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3556666666666666666666667666555543
No 134
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.94 E-value=1.2e+02 Score=21.92 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
..|+.++..|+.+...|+..+..+..+...++
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444444444
No 135
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=35.77 E-value=1.5e+02 Score=22.78 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=29.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 147 EIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
-+.++|...+.|+..|++.+.-..+-.+.++|.++-+.-|-.=++.|+.
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 3445555666666666666665556666677777766655555555543
No 136
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.48 E-value=78 Score=21.93 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=12.4
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAE 176 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~el 176 (347)
+..+..|+...+++|..|++.+.+|
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554444
No 137
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.75 E-value=1.2e+02 Score=21.72 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=16.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
..|+.++..|+.+..+++.++..+..+...++
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555554444
No 138
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=34.67 E-value=1.4e+02 Score=33.18 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
+.+++..+..++.++.+++.++..|++++.+++
T Consensus 866 L~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444433
No 139
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=34.55 E-value=3.4e+02 Score=26.63 Aligned_cols=48 Identities=6% Similarity=0.104 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVT 203 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~ 203 (347)
.+++.+++.++..+..++.+.++.|......+..+|.+...++..+..
T Consensus 184 ~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~ 231 (486)
T 3haj_A 184 PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 231 (486)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777888888888888888888888887777766555443
No 140
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.42 E-value=76 Score=30.52 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=7.4
Q ss_pred hCCCeeecCCC
Q 019043 254 SLGVVPVETVG 264 (347)
Q Consensus 254 k~GVe~I~~vG 264 (347)
.-||-.|.+.|
T Consensus 86 ~SGvY~I~p~~ 96 (323)
T 1lwu_C 86 DSGLYYIKPLK 96 (323)
T ss_dssp SSEEEEECCTT
T ss_pred CCeEEEEecCC
Confidence 35777887754
No 141
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.17 E-value=1.8e+02 Score=23.36 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019043 185 ADFDNFRKRTEKERLSLVT 203 (347)
Q Consensus 185 ADfEN~RKRtekE~e~~~~ 203 (347)
.+.+.-+++++.|.+++..
T Consensus 43 ~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 43 TKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555666666655443
No 142
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=34.07 E-value=1.2e+02 Score=21.24 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=20.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
+|..+..++.-++-|+.+++.|-.+....+.++.+-...+|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555444444443
No 143
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=33.93 E-value=1.4e+02 Score=21.92 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
++..+..++.++......-.+++.+--+.|..|.++-..++..-++|++...+
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~ 57 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHE 57 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555555555666777777888888888999999999876653
No 144
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=33.66 E-value=1.1e+02 Score=26.75 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=27.8
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 151 LLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 151 ~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
+++.++.|+..+...|...++++++|.. -+..|.|+-+|-+
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~LqeL~~----Q~vafknLv~RN~ 46 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQELIL----QQIAFKNLVQRNR 46 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4456677777777778777777777644 3556778776653
No 145
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=33.57 E-value=1.1e+02 Score=23.49 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
+|..+..++.-+.-|+.+++.|-.+....+.++.+-...+|++-
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFL 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555666666666555555555555555543
No 146
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=33.57 E-value=1e+02 Score=29.13 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhcCCChhhHHHHHHHHhhhhhHHHHHHHHHHh
Q 019043 125 FIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVN 168 (347)
Q Consensus 125 ~~~~~l~~~~ea~~~~~e~k~~eiE~~l~~~e~E~~~L~~~l~~ 168 (347)
...++...+++.. +.....++.++++...+++|+.+|++++..
T Consensus 168 ~~~e~~~~~~~~~-n~~~~eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 168 MNAELQSKLKDLF-NVDAFKLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp HHHHHHHHHHHHH-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445554444 333445555555555555555555444333
No 147
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.36 E-value=77 Score=27.85 Aligned_cols=11 Identities=9% Similarity=0.147 Sum_probs=4.7
Q ss_pred hhHHHHHHHHH
Q 019043 124 SFIMETLQSYK 134 (347)
Q Consensus 124 ~~~~~~l~~~~ 134 (347)
..+..+.+.|+
T Consensus 74 ~ql~~I~~e~r 84 (175)
T 3lay_A 74 ATAQKIYDDYY 84 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 148
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.91 E-value=3.4e+02 Score=26.13 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=8.4
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 019043 178 ARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 178 dk~lRl~ADfEN~RKRtekE 197 (347)
++|..+.++.++-|.|+.++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~ 436 (487)
T 3oja_A 417 KRYEEMYVEQQSVQNNAIRD 436 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhh
Confidence 33334444444444443333
No 149
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=32.22 E-value=87 Score=32.01 Aligned_cols=15 Identities=7% Similarity=0.076 Sum_probs=8.6
Q ss_pred ccCCeeeecceEEee
Q 019043 297 KLGDRLLRPSMVKVS 311 (347)
Q Consensus 297 ~l~dRVLRPA~V~Vs 311 (347)
.++||-|-.......
T Consensus 232 ~ynGKKIsKVvytYT 246 (497)
T 3iox_A 232 YYNGKKISKIVYKYT 246 (497)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred ccCCEEeEEEEEEEE
Confidence 368886655444444
No 150
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.16 E-value=2e+02 Score=23.32 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
-++|..+..++++.+.|+..-......+.++..++-|+.++-+
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 4556666666666666655444444455555555555555433
No 151
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.82 E-value=62 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=17.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
-|++++..+.+++.+++.....+..-++.|....
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444444444444433
No 152
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.76 E-value=2.2e+02 Score=23.51 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 170 SEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 170 ~~el~elkdk~lRl~ADfEN~RKR 193 (347)
+..+.+++.++..+.++++..|+-
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777888888888887744
No 153
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.60 E-value=1.8e+02 Score=22.46 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEELSAERARIL 181 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~l 181 (347)
+.++..++..+..+...+.-++..++..+.+++.||-
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888888875
No 154
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=31.53 E-value=2.3e+02 Score=23.75 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 019043 172 ELSAERARILRISADFDNFR 191 (347)
Q Consensus 172 el~elkdk~lRl~ADfEN~R 191 (347)
++..+-+.|..++.++++++
T Consensus 41 eaq~li~eF~~~Q~~~~~~q 60 (151)
T 2pih_A 41 KVSTIVNQIKALQKQAVNLK 60 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566665554
No 155
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.19 E-value=1.1e+02 Score=20.46 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=9.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRI 183 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl 183 (347)
|+.++++|-.+..+++++..|+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444444444444444443
No 156
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=31.12 E-value=82 Score=20.85 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=7.4
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 019043 165 KVVNLSEELSAERARILRI 183 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl 183 (347)
++++|-.+..++.+...|+
T Consensus 9 kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 3333333333443334333
No 157
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.75 E-value=1.4e+02 Score=22.81 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=10.2
Q ss_pred HhhhhhHHHHHHHHHHhHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEEL 173 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el 173 (347)
+..++.++..|+.++..|+.++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 158
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=30.26 E-value=3.3e+02 Score=25.18 Aligned_cols=45 Identities=7% Similarity=0.114 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 157 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~ 201 (347)
.++.+++.++..+..+....++.|......++.+|.+...+...+
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~ 236 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQV 236 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777777778777777777777666554443
No 159
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.05 E-value=1.7e+02 Score=28.75 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 158 E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
|...|+.++..+.+++.+++.+..+++++.+.++.++.++
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 43 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS 43 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777666553
No 160
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=29.95 E-value=1.8e+02 Score=22.09 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=23.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTN 204 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~ 204 (347)
..++.+...|+..+.+...+|.....++++.--..+.++.+++..
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e 48 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEE 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555444443
No 161
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=29.92 E-value=38 Score=32.54 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=7.1
Q ss_pred hCCCeeecCCC
Q 019043 254 SLGVVPVETVG 264 (347)
Q Consensus 254 k~GVe~I~~vG 264 (347)
.-||-.|.+.|
T Consensus 76 ~SGvY~I~p~~ 86 (319)
T 1fzc_C 76 QSGLYFIKPLK 86 (319)
T ss_dssp CCEEEEECCTT
T ss_pred CCeEEEEecCC
Confidence 34777777754
No 162
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=29.59 E-value=1.6e+02 Score=21.17 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=23.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFD---NFRKRTEKERLSLV 202 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfE---N~RKRtekE~e~~~ 202 (347)
++..|..++.++..++....+...|++ |+|-+++.|+.-.+
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344555555565555555555555544 67777777765443
No 163
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.50 E-value=3.6e+02 Score=26.66 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=15.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRt 194 (347)
+|+.+|.-|+..+...--.+.+++..++|++..+
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~ki 150 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDM 150 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444444333334445555555555433
No 164
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.07 E-value=2.1e+02 Score=22.53 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARILRISADFD---NFRKRTEKERL 199 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~lRl~ADfE---N~RKRtekE~e 199 (347)
..++..|..++.++..++....+...+++ |+|-+++.|+.
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554444443 44555554433
No 165
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=28.90 E-value=3.4e+02 Score=24.83 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=23.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~ 200 (347)
+.+++.++..+..++...++.|......++.+|.....+...
T Consensus 185 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~ 226 (337)
T 2x3v_A 185 QKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQ 226 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444555555555566666666666666665555554433
No 166
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.81 E-value=74 Score=30.77 Aligned_cols=41 Identities=7% Similarity=0.239 Sum_probs=22.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
.++--..++.++.++++.+..++++....+--..-+++-++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 33334446666666666666666665555555555554444
No 167
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.64 E-value=1.5e+02 Score=23.28 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=5.6
Q ss_pred HHHHHHhHHHHHHHH
Q 019043 162 LERKVVNLSEELSAE 176 (347)
Q Consensus 162 L~~~l~~L~~el~el 176 (347)
|+.++..|++++..+
T Consensus 6 L~~~i~~L~~q~~~L 20 (85)
T 3viq_B 6 LESRVHLLEQQKEQL 20 (85)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 168
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=28.57 E-value=2e+02 Score=22.19 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 156 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
+.+..++.+++.+++.+..++++++..+..+++.-|-+
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~ 42 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAE 42 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555667777788888888888888888888776633
No 169
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.08 E-value=3e+02 Score=23.98 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHH
Q 019043 142 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSA 175 (347)
Q Consensus 142 e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~e 175 (347)
++.-+++.+..++...+...|.+++..+..++..
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~a 103 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNA 103 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555554444443
No 170
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=27.63 E-value=1.7e+02 Score=25.16 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCCCccCCchhHHHHHHHHHHHhcCCChhhHHHHHHHH------hhhhhHHHHHHHHHHhHHHHHHH-HHHHHHHHHhHH
Q 019043 115 TSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALL------KSFEDEKIDLERKVVNLSEELSA-ERARILRISADF 187 (347)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~~ea~~~~~e~k~~eiE~~l------~~~e~E~~~L~~~l~~L~~el~e-lkdk~lRl~ADf 187 (347)
++++...+.-.+..++--|-..+-++-+..+.+|...- ..+.+....+...+..+.+.+.- ..+-.-++..+.
T Consensus 1 ~~~~p~s~~e~v~~~~w~Y~~~l~~~a~~~ve~l~~seL~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~ 80 (185)
T 3r2p_A 1 GDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKET 80 (185)
T ss_dssp ---CCCCTTHHHHHHHHHHTHHHHHHHHHHHHHHHHSHHHHHTTCCCCTTCSCSSCHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhhHHHHHHHHHHHHHHh
Q 019043 188 DNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGS 254 (347)
Q Consensus 188 EN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~eg~~~I~kqL~~iL~k 254 (347)
+.+|+++.++.++++.. |-|.++.|..-+. .+.+.+..-+..+...|.+-+..
T Consensus 81 ~~Lr~~l~kdlee~r~~--------l~P~~~e~~~~~~------~~~e~lr~~l~Py~~el~~~~~~ 133 (185)
T 3r2p_A 81 EGLRQEMSKDLEEVKAK--------VQPYLDDFQKKWQ------EEMELYRQKVEPLRAELQEGARQ 133 (185)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHH--------HHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHh
No 171
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=27.59 E-value=1.2e+02 Score=26.91 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=24.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
-+-..+..|+.++..++..+.|++-|++...+|++|
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlEk 184 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556666777777777777778888777777653
No 172
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=27.54 E-value=5.2e+02 Score=26.52 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=36.8
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKR 193 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKR 193 (347)
.+.++.+++..++..++.++..+.....+.+...+.+.-++.+..|+++.
T Consensus 357 RlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~ 406 (602)
T 1cii_A 357 RLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQ 406 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777777777777777777777777544
No 173
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.25 E-value=2.6e+02 Score=23.01 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 162 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSL 201 (347)
Q Consensus 162 L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~ 201 (347)
|..++..|..++..++-...|...++.+.-..++.|+...
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443
No 174
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=27.21 E-value=1.8e+02 Score=22.33 Aligned_cols=39 Identities=5% Similarity=0.123 Sum_probs=15.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 146 AEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 146 ~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
.+++..+.--.+..+.|..+|-.+.-|..-+++++..++
T Consensus 35 ~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 35 RRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 333333333333334444455444444444444444333
No 175
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.30 E-value=1.2e+02 Score=20.91 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=17.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEE 172 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~e 172 (347)
++..+..++...++++++|+.++..|++.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666666666666544
No 176
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.14 E-value=72 Score=22.04 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.1
Q ss_pred HHHHHH
Q 019043 169 LSEELS 174 (347)
Q Consensus 169 L~~el~ 174 (347)
|++.+.
T Consensus 32 lekkla 37 (48)
T 1g6u_A 32 LEKKLA 37 (48)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 177
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.07 E-value=2.8e+02 Score=22.85 Aligned_cols=9 Identities=11% Similarity=0.117 Sum_probs=3.9
Q ss_pred hHHHHHHHH
Q 019043 144 KAAEIEALL 152 (347)
Q Consensus 144 k~~eiE~~l 152 (347)
.+.+|..-+
T Consensus 61 sL~eIk~~l 69 (142)
T 3gp4_A 61 SIEALIDYL 69 (142)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 344444433
No 178
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.36 E-value=1.7e+02 Score=20.16 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=8.7
Q ss_pred hHHHHHHHHhhhhhHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLE 163 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~ 163 (347)
.++-+|.+++.+++.+..|+
T Consensus 21 elaaleselqalekklaalk 40 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALK 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 179
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.28 E-value=1.1e+02 Score=20.08 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHH
Q 019043 156 EDEKIDLERKVVNLSEELSAE 176 (347)
Q Consensus 156 e~E~~~L~~~l~~L~~el~el 176 (347)
+++.++|-.+...|+.|...+
T Consensus 6 EdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333334444444444444333
No 180
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=25.16 E-value=3.8e+02 Score=24.14 Aligned_cols=30 Identities=17% Similarity=0.383 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHhCCCeeecCCCCCCCc
Q 019043 239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269 (347)
Q Consensus 239 eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP 269 (347)
..+..+...|.+-|.+.||.. +-.++.||.
T Consensus 117 ~~i~~tM~efekE~~k~~i~e-Emm~Da~d~ 146 (218)
T 3frt_A 117 PEIQATMRELSKEMMKAGIIE-EMLEDTFES 146 (218)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----------
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HHHHHHHhc
Confidence 346678888888888888765 445555654
No 181
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.07 E-value=2.7e+02 Score=22.38 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=17.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
.+.++++|..|+.++......+.++.+++.
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344555555555555555556666665554
No 182
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.01 E-value=85 Score=23.67 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=11.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019043 159 KIDLERKVVNLSEELSAERARILRIS 184 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ 184 (347)
+.+|+..+...+.++.+++.++.+.+
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 183
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.97 E-value=2.8e+02 Score=22.59 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAERAR 179 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~elkdk 179 (347)
++.++...+.++..|.+++.+++..
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ 33 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGT 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 184
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=24.62 E-value=85 Score=27.51 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=18.0
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019043 152 LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTE 195 (347)
Q Consensus 152 l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRte 195 (347)
+..++.++.+++.++.-+.++ +.+.-.|...|.++.++...
T Consensus 28 ~~~l~~e~~e~~d~~lR~~Ae---~eN~rkR~~rE~e~~~~~a~ 68 (177)
T 3a6m_A 28 LKAAEEELKGLKDKYLRLLAD---FDNYRKRMEEELKAREREGV 68 (177)
T ss_dssp TTGGGGTSSSHHHHHHTTTTT---TTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333 33334445555555554443
No 185
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.55 E-value=2e+02 Score=22.00 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=11.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q 019043 149 EALLKSFEDEKIDLERKVVNLSEELSAER 177 (347)
Q Consensus 149 E~~l~~~e~E~~~L~~~l~~L~~el~elk 177 (347)
+..+..++.++..|+.++..+++++.+++
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444443
No 186
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=24.26 E-value=3.6e+02 Score=23.51 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=43.9
Q ss_pred CCchhHHHHHHHHHHHhcCCChhhHHHH-----HHHHhh-hhhHHHHHHHHHHhHHHHHHHHH-HHHHHHHhHHHHHHHH
Q 019043 121 APTSFIMETLQSYKEALASNDDTKAAEI-----EALLKS-FEDEKIDLERKVVNLSEELSAER-ARILRISADFDNFRKR 193 (347)
Q Consensus 121 ~~~~~~~~~l~~~~ea~~~~~e~k~~ei-----E~~l~~-~e~E~~~L~~~l~~L~~el~elk-dk~lRl~ADfEN~RKR 193 (347)
.+...+..++--|-..+-+.-..-..+| ..++.. +.+....|...+..+.+++.=+. +-..++.-+++.||.+
T Consensus 24 s~~e~v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~~~e~lr~~ 103 (191)
T 1nfn_A 24 QRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQAR 103 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777766665555544 111111 11111122222222222222111 1123566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 019043 194 TEKERLSLVTNAQGEVMERLLQVLDNF 220 (347)
Q Consensus 194 tekE~e~~~~~A~e~ll~dLLpVlDnL 220 (347)
+.++.+.++.. |.|+.+.|
T Consensus 104 l~kdlEelr~k--------L~P~~eEL 122 (191)
T 1nfn_A 104 LGADMEDVCGR--------LVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHH--------hhHHHHHH
Confidence 88887777654 55555555
No 187
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.18 E-value=2.4e+02 Score=21.46 Aligned_cols=31 Identities=3% Similarity=0.075 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
++.+++.+++.+..++++++..+..+++.-+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777665
No 188
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.17 E-value=90 Score=22.45 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=18.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 159 KIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
...|+.++..|+.+...|+.++..+..+...++
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666665555555555555554443
No 189
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.10 E-value=3.2e+02 Score=22.98 Aligned_cols=131 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHhcCCC----hhhHHH-HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 123 TSFIMETLQSYKEALASND----DTKAAE-IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 123 ~~~~~~~l~~~~ea~~~~~----e~k~~e-iE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
.|.++..|...++....++ .+-.-+ -...+..+=++...+...|..+...+.+++....+.++.+.... ..+.
T Consensus 4 ~~~mkDRl~eL~~~~~~~~~~~~~~~~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~--~~k~ 81 (180)
T 1s94_A 4 SPRTKDRLAALKAAVSDEEDVEEVAVQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDD--QMKE 81 (180)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHH
T ss_pred CCchhHHHHHHhccccCCCccccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH--HHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhh---hhcccchHhhhhHHHHHHHHHHHHHHhC
Q 019043 198 RLSLVTNAQGEVMERLLQVLDNFERAKTQI---KVQTEGEEKINNSYQSIYKQLVEILGSL 255 (347)
Q Consensus 198 ~e~~~~~A~e~ll~dLLpVlDnLErAl~~~---~~e~e~~~~l~eg~~~I~kqL~~iL~k~ 255 (347)
..+....-+..+++.+=.-|.+|+...... ...+...---..-+..+.++|.+++..|
T Consensus 82 ~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~y 142 (180)
T 1s94_A 82 ELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDY 142 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
No 190
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=24.10 E-value=99 Score=20.35 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHhHHHHHHHH
Q 019043 157 DEKIDLERKVVNLSEELSAE 176 (347)
Q Consensus 157 ~E~~~L~~~l~~L~~el~el 176 (347)
++..+|-.+...|+.|...+
T Consensus 7 ~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 33333444444444444444
No 191
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=23.97 E-value=3.1e+02 Score=22.77 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=6.7
Q ss_pred HHHHHHhhhhhHHHHH
Q 019043 147 EIEALLKSFEDEKIDL 162 (347)
Q Consensus 147 eiE~~l~~~e~E~~~L 162 (347)
++.+.+..++.+...|
T Consensus 6 ~V~s~l~~LEaeyq~L 21 (119)
T 2avr_X 6 SLVGELQALDAEYQNL 21 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 192
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=23.97 E-value=1.6e+02 Score=26.69 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhH------HHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISAD------FDNFRKR 193 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~AD------fEN~RKR 193 (347)
..+.++++++-+.-.+.++|......+.+++.+++.++.++.-+ |+++++.
T Consensus 30 ~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks 86 (206)
T 3oa7_A 30 EALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQS 86 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhc
Confidence 34567888888999999999999999999999999998888755 4666665
No 193
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.84 E-value=1.4e+02 Score=26.36 Aligned_cols=39 Identities=21% Similarity=0.117 Sum_probs=21.3
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 019043 150 ALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFD 188 (347)
Q Consensus 150 ~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfE 188 (347)
..+..++.++..|+.++...+.+...+.+.+.+...|+.
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL~ 173 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLELN 173 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555555555555555555555556666654
No 194
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.47 E-value=69 Score=22.96 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=9.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHH
Q 019043 148 IEALLKSFEDEKIDLERKVVNLSE 171 (347)
Q Consensus 148 iE~~l~~~e~E~~~L~~~l~~L~~ 171 (347)
+...+..+..++.+|+.++..|++
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455555544443
No 195
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=23.36 E-value=2.1e+02 Score=20.46 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
.++..+..++.++..-..+--+++-+--+.|..+.++-..+...-..|++...+
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~ 57 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777666555555566666777888888888888888889887755
No 196
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=23.36 E-value=89 Score=19.25 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHH
Q 019043 155 FEDEKIDLERKVVNLSEELSAE 176 (347)
Q Consensus 155 ~e~E~~~L~~~l~~L~~el~el 176 (347)
+.+|..+|+.++..|+.+.+++
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4455555666665655554443
No 197
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.32 E-value=2.1e+02 Score=20.63 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019043 143 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196 (347)
Q Consensus 143 ~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtek 196 (347)
.++..+..+|.++..-..+--+++-.--+.|..+.++-..+...-..|++...+
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~ 62 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQK 62 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655544444556666677778888888888888888877643
No 198
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=22.74 E-value=2.8e+02 Score=21.75 Aligned_cols=68 Identities=10% Similarity=0.154 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHhcCC------ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 124 SFIMETLQSYKEALASN------DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 124 ~~~~~~l~~~~ea~~~~------~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
..|..++...+.+-..+ ++.++.++=..+-.+.-++..+-.+....++++..+++++..+...|+.+-
T Consensus 10 ~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~ll 83 (88)
T 2pjw_H 10 TTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQLM 83 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666654433 245566666666666667777777777777777777777777777776654
No 199
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=22.37 E-value=1.2e+02 Score=24.99 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=3.8
Q ss_pred HHHHHHHhHH
Q 019043 161 DLERKVVNLS 170 (347)
Q Consensus 161 ~L~~~l~~L~ 170 (347)
+|+.+|+.++
T Consensus 8 ~l~~qi~~~e 17 (123)
T 4dzo_A 8 ELKKQVESAE 17 (123)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 200
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=22.35 E-value=3.2e+02 Score=22.32 Aligned_cols=67 Identities=12% Similarity=0.223 Sum_probs=48.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Q 019043 161 DLERKVVNLSEELSAERARILRISAD-FDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQI 227 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~AD-fEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~ 227 (347)
.|-++..-.++|+.+...++.++.++ -+.|.=+-+.+..+-....+-++...|-..+++|+..+...
T Consensus 19 RL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~ 86 (116)
T 3mxz_A 19 RIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAEL 86 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666777776664 45677777788777777788888888888888888877643
No 201
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=22.25 E-value=5.6e+02 Score=25.07 Aligned_cols=16 Identities=25% Similarity=0.574 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhCC
Q 019043 241 YQSIYKQLVEILGSLG 256 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~G 256 (347)
+..++..|...+....
T Consensus 263 ~~~~~e~l~~~i~~id 278 (486)
T 3haj_A 263 YKAIYHDLEQSIRAAD 278 (486)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4456677777776554
No 202
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=22.21 E-value=2.9e+02 Score=21.67 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhC
Q 019043 241 YQSIYKQLVEILGSL 255 (347)
Q Consensus 241 ~~~I~kqL~~iL~k~ 255 (347)
+..+.++|.+++..|
T Consensus 97 ~~~L~~kf~e~m~~y 111 (127)
T 1ez3_A 97 HSTLSRKFVEVMSEY 111 (127)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445667777776654
No 203
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=22.00 E-value=3.6e+02 Score=22.77 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=16.5
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHHhHHHHHH
Q 019043 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELS 174 (347)
Q Consensus 141 ~e~k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~ 174 (347)
++.++..++.+|+....-..+...+.......+.
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~ 83 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLV 83 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4456666666666555444444434433333333
No 204
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=21.98 E-value=2.1e+02 Score=22.54 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=9.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 019043 160 IDLERKVVNLSEELSAERARIL 181 (347)
Q Consensus 160 ~~L~~~l~~L~~el~elkdk~l 181 (347)
-.|..++..+.++++.+|++|+
T Consensus 61 iaLAa~l~~lH~~V~~~Ke~Yl 82 (93)
T 3t98_B 61 VALAAQLQSIHENVKVLKEQYL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 205
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.91 E-value=2.9e+02 Score=21.65 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 019043 171 EELSAERARILRISADFDNFRKRT 194 (347)
Q Consensus 171 ~el~elkdk~lRl~ADfEN~RKRt 194 (347)
.++..-++.+.++...+++.++++
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 206
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=21.63 E-value=2e+02 Score=21.61 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHH
Q 019043 145 AAEIEALLKSFEDEKIDLERKVVNLSEE 172 (347)
Q Consensus 145 ~~eiE~~l~~~e~E~~~L~~~l~~L~~e 172 (347)
+..|+..++.++.++..+...+..+++|
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~E 31 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEAD 31 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666665554
No 207
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=21.57 E-value=3.5e+02 Score=22.86 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhHHHH
Q 019043 173 LSAERARILRISADFDN 189 (347)
Q Consensus 173 l~elkdk~lRl~ADfEN 189 (347)
+..++..|-.+..|++|
T Consensus 85 LAqLQ~AY~~LfqeYd~ 101 (130)
T 3cl3_D 85 LAQLQVAYHQLFQEYDN 101 (130)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 208
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.44 E-value=1.9e+02 Score=22.43 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhc
Q 019043 126 IMETLQSYKEALA 138 (347)
Q Consensus 126 ~~~~l~~~~ea~~ 138 (347)
+..+|..+.+.+.
T Consensus 11 vEnLi~EN~eLl~ 23 (77)
T 2w83_C 11 VENLILENTQLLE 23 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 209
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.19 E-value=97 Score=30.56 Aligned_cols=13 Identities=0% Similarity=-0.125 Sum_probs=5.4
Q ss_pred CCceeEEeccccc
Q 019043 285 EGVIIEEFRKGFK 297 (347)
Q Consensus 285 ~gtVveV~qkGY~ 297 (347)
+|+-+-+-+..|.
T Consensus 109 ~~~~v~l~~~~~~ 121 (405)
T 4b4t_J 109 ASQRVCLRSDSYM 121 (405)
T ss_dssp SSCEEEEETTTCS
T ss_pred Ccceeeeecccce
Confidence 3444444444443
No 210
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=20.63 E-value=2.4e+02 Score=20.09 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=36.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019043 144 KAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKE 197 (347)
Q Consensus 144 k~~eiE~~l~~~e~E~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE 197 (347)
++..+..++.++..-..+--+++-.--+.|+.+.++-..+...-..|++...+=
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l 56 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRV 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665554444444556666777778888888888888888877653
No 211
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.43 E-value=2.6e+02 Score=21.84 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=15.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 019043 161 DLERKVVNLSEELSAERARILRISADFDNFR 191 (347)
Q Consensus 161 ~L~~~l~~L~~el~elkdk~lRl~ADfEN~R 191 (347)
.++.++..|+.+...|+.++..+..++.-+|
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544444
No 212
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=20.13 E-value=2.8e+02 Score=20.75 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=8.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHh
Q 019043 165 KVVNLSEELSAERARILRISA 185 (347)
Q Consensus 165 ~l~~L~~el~elkdk~lRl~A 185 (347)
+|...+..+.+|.-++++...
T Consensus 32 ki~e~krkl~eLsHRiLkvlv 52 (65)
T 3t97_B 32 KIAQYKRKLMDLSHRTLQVLI 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333444333
Done!