Query 019044
Match_columns 347
No_of_seqs 339 out of 1906
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0730 Predicted permeases [G 99.8 1.2E-18 2.6E-23 162.4 19.8 199 4-314 48-249 (258)
2 PRK10621 hypothetical protein; 99.8 1.3E-18 2.8E-23 163.1 18.0 195 4-313 52-248 (266)
3 PF01925 TauE: Sulfite exporte 99.8 1.3E-17 2.8E-22 153.3 14.9 177 21-312 56-237 (240)
4 PRK10621 hypothetical protein; 99.5 1.5E-13 3.3E-18 128.8 15.7 109 205-314 12-120 (266)
5 COG0730 Predicted permeases [G 99.5 4.9E-13 1.1E-17 124.7 15.5 110 205-314 7-116 (258)
6 PF01925 TauE: Sulfite exporte 99.3 2.6E-11 5.7E-16 111.3 12.7 105 209-314 2-106 (240)
7 PF11169 DUF2956: Protein of u 79.6 8.7 0.00019 30.6 6.5 17 127-146 83-99 (103)
8 PF02673 BacA: Bacitracin resi 74.2 77 0.0017 29.7 14.4 93 219-311 157-255 (259)
9 PF12794 MscS_TM: Mechanosensi 72.2 87 0.0019 30.4 12.9 51 28-78 200-252 (340)
10 KOG2881 Predicted membrane pro 69.4 26 0.00056 32.8 7.9 62 23-84 98-159 (294)
11 PF05052 MerE: MerE protein; 64.0 17 0.00037 27.1 4.5 57 14-73 3-70 (75)
12 TIGR02840 spore_YtaF putative 63.1 1.2E+02 0.0025 27.4 16.6 53 26-78 32-84 (206)
13 PF11044 TMEMspv1-c74-12: Plec 57.5 56 0.0012 22.0 5.6 15 68-82 21-35 (49)
14 PF01169 UPF0016: Uncharacteri 57.0 36 0.00078 25.7 5.5 37 273-309 39-75 (78)
15 COG4280 Predicted membrane pro 57.0 15 0.00033 33.0 3.9 47 30-81 44-90 (236)
16 PRK00281 undecaprenyl pyrophos 56.7 1.8E+02 0.0038 27.4 21.0 82 230-311 172-258 (268)
17 PF11368 DUF3169: Protein of u 54.2 1.8E+02 0.0039 26.8 14.0 25 28-52 9-33 (248)
18 COG2119 Predicted membrane pro 54.2 32 0.0007 30.5 5.5 50 25-74 35-84 (190)
19 PRK11469 hypothetical protein; 54.0 25 0.00055 31.2 4.9 50 27-77 40-89 (188)
20 PF04018 DUF368: Domain of unk 53.0 2E+02 0.0043 26.9 22.4 82 206-307 143-224 (257)
21 PF01988 VIT1: VIT family; In 50.1 1.9E+02 0.0041 25.9 12.4 22 128-149 129-150 (213)
22 COG1620 LldP L-lactate permeas 47.8 43 0.00093 34.4 6.0 48 209-256 106-155 (522)
23 PF01169 UPF0016: Uncharacteri 47.3 79 0.0017 23.8 6.0 42 26-67 35-76 (78)
24 PF04066 MrpF_PhaF: Multiple r 45.2 1E+02 0.0022 21.4 6.6 52 242-293 3-54 (55)
25 TIGR00892 2A0113 monocarboxyla 44.7 55 0.0012 32.6 6.4 12 38-49 382-393 (455)
26 COG3619 Predicted membrane pro 44.3 67 0.0015 29.5 6.2 58 6-63 148-206 (226)
27 PF05145 AmoA: Putative ammoni 42.2 3.2E+02 0.0069 26.2 23.0 66 3-75 3-77 (318)
28 PF03741 TerC: Integral membra 41.1 91 0.002 27.5 6.4 58 15-75 22-80 (183)
29 COG2119 Predicted membrane pro 39.8 1.9E+02 0.0042 25.7 8.1 67 5-75 118-184 (190)
30 COG5336 Uncharacterized protei 37.8 1.5E+02 0.0034 24.0 6.5 49 27-75 45-95 (116)
31 PRK10420 L-lactate permease; P 37.0 3.5E+02 0.0076 28.3 10.8 44 210-253 121-165 (551)
32 PRK01844 hypothetical protein; 35.9 1.1E+02 0.0023 22.9 5.0 28 275-302 8-35 (72)
33 TIGR02185 Trep_Strep conserved 35.8 3.1E+02 0.0067 24.2 9.6 30 272-301 159-188 (189)
34 PF14316 DUF4381: Domain of un 35.7 99 0.0021 26.0 5.6 15 53-67 21-35 (146)
35 COG1971 Predicted membrane pro 35.2 1.2E+02 0.0027 27.0 6.2 47 31-78 44-90 (190)
36 PRK09695 glycolate transporter 34.4 4E+02 0.0086 27.9 10.8 44 210-253 121-165 (560)
37 PRK13747 putative mercury resi 34.3 1.2E+02 0.0026 22.7 5.0 37 14-50 3-50 (78)
38 COG3180 AbrB Putative ammonia 32.5 4.3E+02 0.0094 25.9 10.0 74 206-301 12-85 (352)
39 KOG3972 Predicted membrane pro 31.6 89 0.0019 28.3 4.7 18 206-223 108-125 (252)
40 PTZ00370 STEVOR; Provisional 31.0 98 0.0021 29.4 5.1 46 39-84 242-290 (296)
41 TIGR00908 2A0305 ethanolamine 28.7 1.4E+02 0.0031 29.6 6.3 11 14-24 370-380 (442)
42 PRK00523 hypothetical protein; 28.7 1.7E+02 0.0036 21.9 4.9 26 276-301 10-35 (72)
43 PF03169 OPT: OPT oligopeptide 28.4 7.2E+02 0.016 26.1 16.4 15 210-224 397-411 (624)
44 PRK12585 putative monovalent c 28.2 2.7E+02 0.0058 24.9 7.1 20 276-295 72-91 (197)
45 PF04018 DUF368: Domain of unk 27.6 5.1E+02 0.011 24.2 10.1 41 267-307 50-90 (257)
46 TIGR02230 ATPase_gene1 F0F1-AT 27.5 2.3E+02 0.0049 22.6 6.0 23 32-54 50-72 (100)
47 TIGR00795 lctP L-lactate trans 27.2 7.2E+02 0.016 25.8 12.6 45 209-253 111-156 (530)
48 COG2851 CitM H+/citrate sympor 27.1 4.8E+02 0.01 26.1 9.2 18 211-229 293-310 (433)
49 PF13829 DUF4191: Domain of un 25.6 3.6E+02 0.0079 24.7 7.7 47 24-74 25-71 (224)
50 PRK02958 tatA twin arginine tr 25.5 1.2E+02 0.0026 22.7 3.8 28 56-83 9-42 (73)
51 PF00558 Vpu: Vpu protein; In 25.4 65 0.0014 24.6 2.4 6 70-75 27-32 (81)
52 COG0580 GlpF Glycerol uptake f 25.3 2.1E+02 0.0045 26.6 6.1 33 263-295 75-107 (241)
53 PF08566 Pam17: Mitochondrial 23.1 3.9E+02 0.0084 23.5 7.1 13 236-248 71-83 (173)
54 PRK04598 tatA twin arginine tr 22.9 2.8E+02 0.0061 21.2 5.4 27 57-83 10-42 (81)
55 COG1968 BacA Undecaprenyl pyro 22.8 6.5E+02 0.014 23.8 11.4 27 28-54 84-110 (270)
56 PRK00191 tatA twin arginine tr 22.7 2.1E+02 0.0046 22.0 4.8 14 71-84 29-42 (84)
57 PRK10263 DNA translocase FtsK; 22.5 1.1E+03 0.025 27.5 12.2 23 210-234 67-89 (1355)
58 COG1968 BacA Undecaprenyl pyro 22.3 6.7E+02 0.015 23.7 16.7 88 222-309 165-257 (270)
59 PRK11387 S-methylmethionine tr 22.2 1.8E+02 0.0038 29.3 5.6 13 63-75 445-457 (471)
60 COG3180 AbrB Putative ammonia 22.2 7.6E+02 0.016 24.3 12.6 82 205-309 190-272 (352)
61 PF11351 DUF3154: Protein of u 22.1 2.4E+02 0.0052 23.1 5.4 53 23-75 62-118 (123)
62 TIGR02230 ATPase_gene1 F0F1-AT 21.9 2.3E+02 0.0049 22.6 5.0 17 280-296 55-71 (100)
63 PF07857 DUF1632: CEO family ( 21.7 3.9E+02 0.0084 25.0 7.3 34 156-189 216-249 (254)
64 COG3763 Uncharacterized protei 21.3 2.8E+02 0.006 20.6 4.9 27 275-301 8-34 (71)
65 PF02416 MttA_Hcf106: mttA/Hcf 21.1 2.9E+02 0.0063 19.1 5.1 12 53-64 4-15 (53)
66 PF03672 UPF0154: Uncharacteri 21.0 1.7E+02 0.0036 21.4 3.7 24 278-301 4-27 (64)
67 TIGR01478 STEVOR variant surfa 21.0 1.2E+02 0.0026 28.8 3.7 43 39-81 246-291 (295)
68 PRK13453 F0F1 ATP synthase sub 20.8 2E+02 0.0043 24.9 5.0 44 39-82 9-52 (173)
69 PRK10726 hypothetical protein; 20.5 2.2E+02 0.0048 22.7 4.5 34 37-70 61-94 (105)
70 PF11833 DUF3353: Protein of u 20.5 3.9E+02 0.0084 23.8 6.8 62 2-69 120-190 (194)
No 1
>COG0730 Predicted permeases [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=162.42 Aligned_cols=199 Identities=22% Similarity=0.318 Sum_probs=160.6
Q ss_pred chhHHHHHHHh-hhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 019044 4 GAAGSTVYYNL-RLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKK 82 (347)
Q Consensus 4 g~sla~~i~~~-~~~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k~~~~~~~ 82 (347)
|+++....++. .....|++|..+||+.+..+.+..++|+.+|+.+...+|+..+...+.+++.+.+.+++++.++ .++
T Consensus 48 ~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~-~~~ 126 (258)
T COG0730 48 GTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL-AKA 126 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc-ccc
Confidence 45555555553 4555566777799999999999999999999999999999999999999999999999876221 000
Q ss_pred HHHHHHHHHHhhhhhccccccccccccCCCCCCCCCCCCccchhcccchHHHHHHHHHHHHHHHHHHhhcCCCCcchHHH
Q 019044 83 ETMMKKEAAKVLESESKAADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYW 162 (347)
Q Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~cs~~yw 162 (347)
|. .+ ++ ..||.
T Consensus 127 ~~------------------~~---------------~~------~~~~~------------------------------ 137 (258)
T COG0730 127 ED------------------RA---------------AR------LRPLL------------------------------ 137 (258)
T ss_pred cc------------------cc---------------cc------cCcch------------------------------
Confidence 00 00 00 11111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhcccccccCcccccchhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHH-hcCCCh
Q 019044 163 ILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFL-ELGIPP 241 (347)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~-~~g~~~ 241 (347)
.......|+++|+++|++|+|||...+|.+. ..+.|.
T Consensus 138 ------------------------------------------~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~ 175 (258)
T COG0730 138 ------------------------------------------FALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPL 175 (258)
T ss_pred ------------------------------------------hHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCch
Confidence 0122457889999999999999999999996 678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019044 242 QVASATSTFAMTFSSSMSVVQYYL-LDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIF 314 (347)
Q Consensus 242 ~~A~ats~~~~~~~s~~~~~~~~~-~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l~~~~l~~~~~v~ll~~~~~ 314 (347)
+.+++|+.+..++++..+...|.. .|++||..+..+.+++++|+++|++++++++++.+|+.+..+++...+.
T Consensus 176 ~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~ 249 (258)
T COG0730 176 KLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIK 249 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 6999999988999999999999999999999999999998776665543
No 2
>PRK10621 hypothetical protein; Provisional
Probab=99.81 E-value=1.3e-18 Score=163.11 Aligned_cols=195 Identities=16% Similarity=0.146 Sum_probs=153.8
Q ss_pred chhHHHHHHHh-hhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 019044 4 GAAGSTVYYNL-RLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKK 82 (347)
Q Consensus 4 g~sla~~i~~~-~~~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k~~~~~~~ 82 (347)
++++...+.+. .....|+++..+||+.++.+.+..++|+.+|+.+...+|+..+..++.+++.+.+.+++.|- ++
T Consensus 52 ~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~~----~~ 127 (266)
T PRK10621 52 ATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLMP----KL 127 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC----cc
Confidence 45555544444 22223345567999999999999999999999999999999999999999998888776540 00
Q ss_pred HHHHHHHHHHhhhhhccccccccccccCCCCCCCCCCCCccchhcccchHHHHHHHHHHHHHHHHHHhhcCCCCcchHHH
Q 019044 83 ETMMKKEAAKVLESESKAADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYW 162 (347)
Q Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~cs~~yw 162 (347)
++ ++ .+ + +.+ .
T Consensus 128 ~~---~~----------------------~~-------~------~~~-~------------------------------ 138 (266)
T PRK10621 128 GE---ED----------------------RQ-------R------RLY-G------------------------------ 138 (266)
T ss_pred cc---cc----------------------cc-------c------ccc-c------------------------------
Confidence 00 00 00 0 000 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhcccccccCcccccchhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHH-hcCCCh
Q 019044 163 ILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFL-ELGIPP 241 (347)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~-~~g~~~ 241 (347)
.......|+++|+++|++|+|||.+.+|.+. .++.|+
T Consensus 139 ------------------------------------------~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~ 176 (266)
T PRK10621 139 ------------------------------------------LPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNL 176 (266)
T ss_pred ------------------------------------------hHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCH
Confidence 0112346889999999999999999998774 779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019044 242 QVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTI 313 (347)
Q Consensus 242 ~~A~ats~~~~~~~s~~~~~~~~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l~~~~l~~~~~v~ll~~~~ 313 (347)
++|++|+.+..++++..+...|...|++||..+..+.+++++|+++|+++.++++++.+|+.+..+++...+
T Consensus 177 ~~a~~ts~~~~~~~~~~~~~~~~~~G~v~~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i 248 (266)
T PRK10621 177 AKATAHAKVLNATSNIGGLLLFILGGKVIWATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSA 248 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887765443
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.76 E-value=1.3e-17 Score=153.29 Aligned_cols=177 Identities=25% Similarity=0.386 Sum_probs=145.7
Q ss_pred CCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 019044 21 LDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKA 100 (347)
Q Consensus 21 ~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k~~~~~~~e~~~~~~~~~~~~~~~~~ 100 (347)
+++..+||+.+..+.+..++|+.+|+.+...+|+..+..++.+++.+.+.+++.|.++ ++.+
T Consensus 56 ~~~~~i~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~~~---~~~~--------------- 117 (240)
T PF01925_consen 56 RKHGNIDWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKKRR---KTPK--------------- 117 (240)
T ss_pred HHccccchhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcccc---cccc---------------
Confidence 3446799999999999999999999999999999999999999999999988765110 0000
Q ss_pred cccccccccCCCCCCCCCCCCccchhcccchHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHhhHHHHHHHHHHHH
Q 019044 101 ADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEA 180 (347)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~cs~~yw~~~~~~~~~~i~~~~~~~ 180 (347)
. +++ +.-+
T Consensus 118 ------------~------~~~----~~~~-------------------------------------------------- 125 (240)
T PF01925_consen 118 ------------S------RSS----PPKR-------------------------------------------------- 125 (240)
T ss_pred ------------c------ccc----ccch--------------------------------------------------
Confidence 0 000 0000
Q ss_pred HHHHhhcccccccCcccccchhhHHHHHHHHHHH-HHHHHhhhcccchhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHH
Q 019044 181 ICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIV-AGMVGGLLGLGGGFILGPLFL-ELGIPPQVASATSTFAMTFSSSM 258 (347)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~G~~sgl~GiGGG~i~vP~L~-~~g~~~~~A~ats~~~~~~~s~~ 258 (347)
......|++ +|+++|++|+|||.+.+|.+. ..+.|++++.+|+.++.++++..
T Consensus 126 -------------------------~~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~ 180 (240)
T PF01925_consen 126 -------------------------WLLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVA 180 (240)
T ss_pred -------------------------hhhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111234455 999999999999999999997 57999999999999999999999
Q ss_pred HHHHHHHhCCccHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019044 259 SVVQYYLLDRFPVPYAAF---FTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALT 312 (347)
Q Consensus 259 ~~~~~~~~g~i~~~~~~~---l~~~~~~Ga~iGa~l~~~l~~~~l~~~~~v~ll~~~ 312 (347)
+...|...|.+||+.... +.+++++|+++|.++.++++++++|+.+.++++...
T Consensus 181 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~ 237 (240)
T PF01925_consen 181 ALISFLILGDVDWPMLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSG 237 (240)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999997776 999999999999999999999999998887766543
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.54 E-value=1.5e-13 Score=128.83 Aligned_cols=109 Identities=17% Similarity=0.334 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Q 019044 205 IVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFA 284 (347)
Q Consensus 205 ~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~i~~~~~~~l~~~~~~G 284 (347)
...+..+|+++|+++|+.| |||.+.+|+|..+|+||++|++|+.+.++.+++++...|.+++++||+....+.+++++|
T Consensus 12 ~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~G 90 (266)
T PRK10621 12 LGVLFFVAMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFVG 90 (266)
T ss_pred HHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3556678999999999999 999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019044 285 AFAGQHVVRKIIAVLGRASIIVFILALTIF 314 (347)
Q Consensus 285 a~iGa~l~~~l~~~~l~~~~~v~ll~~~~~ 314 (347)
+++|++++..+|++.++..+.++++...+.
T Consensus 91 a~~G~~l~~~l~~~~l~~~~~~~ll~~~~~ 120 (266)
T PRK10621 91 SMSGALLVQYVQADILRQILPILVIGIGLY 120 (266)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998777655443
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.50 E-value=4.9e-13 Score=124.67 Aligned_cols=110 Identities=30% Similarity=0.478 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Q 019044 205 IVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFA 284 (347)
Q Consensus 205 ~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~i~~~~~~~l~~~~~~G 284 (347)
......+|+++|+++|++|+|||.+.+|.+..+++||+.|.+|+.....+++..++..|+++|++||+.+..+.+++++|
T Consensus 7 ~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G 86 (258)
T COG0730 7 LLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIG 86 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019044 285 AFAGQHVVRKIIAVLGRASIIVFILALTIF 314 (347)
Q Consensus 285 a~iGa~l~~~l~~~~l~~~~~v~ll~~~~~ 314 (347)
+.+|+.+...+|++.++..+.++++....+
T Consensus 87 ~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~ 116 (258)
T COG0730 87 AFLGALLALLLPAELLKLLFGLLLLLLALY 116 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877766544
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.30 E-value=2.6e-11 Score=111.33 Aligned_cols=105 Identities=25% Similarity=0.422 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHH
Q 019044 209 CFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAG 288 (347)
Q Consensus 209 ~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~i~~~~~~~l~~~~~~Ga~iG 288 (347)
.++++++|++.|..|.|+|.+.+|+|..+ +||++|++|+.....+++..+++.|++++++||+....+.+++++|+.+|
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~iG 80 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILILF-LPPKQAVATSLFINLFTSLIAALRHRKHGNIDWKIVLPLIIGALIGVVIG 80 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhHhHHHHHHH
Confidence 46789999999999999999999999765 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019044 289 QHVVRKIIAVLGRASIIVFILALTIF 314 (347)
Q Consensus 289 a~l~~~l~~~~l~~~~~v~ll~~~~~ 314 (347)
+++...+|++.++..+.++++.....
T Consensus 81 ~~l~~~l~~~~l~~~~~~~ll~~~~~ 106 (240)
T PF01925_consen 81 AWLLSLLPDDILKLIFGLFLLLLAIY 106 (240)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888766554
No 7
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=79.56 E-value=8.7 Score=30.56 Aligned_cols=17 Identities=41% Similarity=1.056 Sum_probs=12.1
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 019044 127 KNIYWKELSLLLYVWLGFLA 146 (347)
Q Consensus 127 ~~~~~~~~~~l~~~~~~~~~ 146 (347)
..+||. +|++.|+||.+
T Consensus 83 ~~LPW~---LL~lSW~gF~~ 99 (103)
T PF11169_consen 83 SWLPWG---LLVLSWIGFIA 99 (103)
T ss_pred cchhHH---HHHHHHHHHHH
Confidence 366776 78888988843
No 8
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=74.25 E-value=77 Score=29.66 Aligned_cols=93 Identities=11% Similarity=-0.070 Sum_probs=61.1
Q ss_pred HhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhC-C-----ccHHHHHHHHHHHHHHHHHHHHHH
Q 019044 219 GGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLD-R-----FPVPYAAFFTLVATFAAFAGQHVV 292 (347)
Q Consensus 219 sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g-~-----i~~~~~~~l~~~~~~Ga~iGa~l~ 292 (347)
+-+=|+.=.-..+-..+..|++.++|.--|-.+.++..+.+...-.... + .++.....-.+.+++.+++.-+..
T Consensus 157 Al~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~l 236 (259)
T PF02673_consen 157 ALIPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWL 236 (259)
T ss_pred ccCCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666677788999999999999999888877776544321 1 234444444555666666666666
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 019044 293 RKIIAVLGRASIIVFILAL 311 (347)
Q Consensus 293 ~~l~~~~l~~~~~v~ll~~ 311 (347)
.++-++.....|+++.+.+
T Consensus 237 l~~~~~~~~~~F~~Y~~~l 255 (259)
T PF02673_consen 237 LRFLKRRKLRPFAIYRIIL 255 (259)
T ss_pred HHHHhhCCceeehhHHhhH
Confidence 6666655555566655543
No 9
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=72.18 E-value=87 Score=30.45 Aligned_cols=51 Identities=8% Similarity=0.159 Sum_probs=35.0
Q ss_pred hhHHHHHhhHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 019044 28 YDLALLFQPMLMLGISIGVAF--NVMFADWMVTVLLIILFIGTSTKALFKGID 78 (347)
Q Consensus 28 ~~l~l~l~P~~l~G~~iGv~l--n~~~P~~~l~~l~~vlL~~~~~~~~~k~~~ 78 (347)
+..+++..|..+++..+=.+. +..+-+.++..++.++.....+.+.+++..
T Consensus 200 ~~~~li~~Pl~li~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl~ 252 (340)
T PF12794_consen 200 WWPLLILAPLALIVLALLGYYYTALQLLERLILSLYLLLGWLLVYQLILRWLL 252 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778777776554444 445566667777777888888888887653
No 10
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=69.45 E-value=26 Score=32.85 Aligned_cols=62 Identities=18% Similarity=0.084 Sum_probs=50.4
Q ss_pred CCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 019044 23 MPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKET 84 (347)
Q Consensus 23 ~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k~~~~~~~e~ 84 (347)
|-++=-.-..-+.-|+++++.+|=.--.++|..+-..+-.+++.+.++|+++-|++..+.|.
T Consensus 98 R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~ 159 (294)
T KOG2881|consen 98 RLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEG 159 (294)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 34555555666778899999999888889999999999999999999999999877765443
No 11
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=63.95 E-value=17 Score=27.06 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=34.1
Q ss_pred hhhcCCCC-CCCccchhH---HHHHhhH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHH
Q 019044 14 LRLRHPTL-DMPLIDYDL---ALLFQPM-------LMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKAL 73 (347)
Q Consensus 14 ~~~~hp~~-~~plId~~l---~l~l~P~-------~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~ 73 (347)
.-+|-|+. ++|.=-|-. +.+..|+ ++.||-.|+++... |.+..+....|.+.+....
T Consensus 3 ~p~~~p~e~~k~i~gy~Wg~lA~lTCPCHLpil~~vLaGTaaGafl~e~---w~iaal~l~~LF~lsl~~~ 70 (75)
T PF05052_consen 3 SPERLPPETRKPITGYLWGLLALLTCPCHLPILAPVLAGTAAGAFLGEH---WVIAALTLTGLFVLSLTRA 70 (75)
T ss_pred CcccCChhhcCcchhhhhHHHHHhhCcchHHHHHHHHccchHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34555654 455555543 3333343 78899999998875 7666665555555554433
No 12
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=63.07 E-value=1.2e+02 Score=27.35 Aligned_cols=53 Identities=8% Similarity=0.213 Sum_probs=41.2
Q ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 019044 26 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGID 78 (347)
Q Consensus 26 Id~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k~~~ 78 (347)
...-+..+-.-++.+|..+|-.+..++|+++-..+=.++|.+.+.++++++.+
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~ 84 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFR 84 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556667888999999999999998766677778888899999987653
No 13
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=57.51 E-value=56 Score=21.99 Aligned_cols=15 Identities=13% Similarity=-0.161 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHH
Q 019044 68 TSTKALFKGIDTWKK 82 (347)
Q Consensus 68 ~~~~~~~k~~~~~~~ 82 (347)
.+.-.+.|-++.+.|
T Consensus 21 iGl~IyQkikqIrgK 35 (49)
T PF11044_consen 21 IGLSIYQKIKQIRGK 35 (49)
T ss_pred HHHHHHHHHHHHHhh
Confidence 445555554444433
No 14
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=57.03 E-value=36 Score=25.69 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019044 273 YAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFIL 309 (347)
Q Consensus 273 ~~~~l~~~~~~Ga~iGa~l~~~l~~~~l~~~~~v~ll 309 (347)
....+.....++..+|..+.+++|+++++..-++..+
T Consensus 39 ~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl 75 (78)
T PF01169_consen 39 ATLALALATGLAVLLGSWLASRIPERYIKWVAGALFL 75 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 3455677788899999999999999999987665443
No 15
>COG4280 Predicted membrane protein [Function unknown]
Probab=56.98 E-value=15 Score=32.95 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=36.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 019044 30 LALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWK 81 (347)
Q Consensus 30 l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k~~~~~~ 81 (347)
+++.+.|...+|.. -.++|--.+++.-.++|++.++|..||+.+.++
T Consensus 44 lalvl~l~lvlGk~-----L~lvPln~lqiv~gvLLllFG~rw~Rsavrr~a 90 (236)
T COG4280 44 LALVLILTLVLGKL-----LYLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFA 90 (236)
T ss_pred HHHHHHHHHHHccc-----eeeeechHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566655553 257788899999999999999999999877666
No 16
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=56.66 E-value=1.8e+02 Score=27.43 Aligned_cols=82 Identities=17% Similarity=0.034 Sum_probs=44.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH-Hh-CC---ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019044 230 LGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYY-LL-DR---FPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASI 304 (347)
Q Consensus 230 ~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~-~~-g~---i~~~~~~~l~~~~~~Ga~iGa~l~~~l~~~~l~~~~ 304 (347)
.+-..++.|++.++|.--|-++..+.-+.+...-. .. +. .++...+.-.+.+++.+++.-+...++-++.--..|
T Consensus 172 TI~~~l~~G~~r~~Aa~fSFLlsiPai~gA~~l~~~~~~~~~~~~~~~~~~~g~i~afi~g~~~I~~ll~~~~~~~~~~F 251 (268)
T PRK00281 172 TISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDLLKLFHLLSAADLPLLAVGFVVAFVVALIAIKWLLKYIKRHSFTPF 251 (268)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeh
Confidence 33334467999999999998888888776665332 11 11 333222223344555555555555554444433345
Q ss_pred HHHHHHH
Q 019044 305 IVFILAL 311 (347)
Q Consensus 305 ~v~ll~~ 311 (347)
+.+.+.+
T Consensus 252 ~~Yri~l 258 (268)
T PRK00281 252 AIYRIIL 258 (268)
T ss_pred HHHHHHH
Confidence 4444433
No 17
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=54.22 E-value=1.8e+02 Score=26.76 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=17.4
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHh
Q 019044 28 YDLALLFQPMLMLGISIGVAFNVMF 52 (347)
Q Consensus 28 ~~l~l~l~P~~l~G~~iGv~ln~~~ 52 (347)
++....+.-+.++|.++|......-
T Consensus 9 ~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 9 LRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777778888887665444
No 18
>COG2119 Predicted membrane protein [Function unknown]
Probab=54.21 E-value=32 Score=30.51 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=38.6
Q ss_pred ccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHH
Q 019044 25 LIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALF 74 (347)
Q Consensus 25 lId~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~ 74 (347)
.|--.++.=+.-+..+...+|-.....+|+..+.....+..+..+.+++.
T Consensus 35 ~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ 84 (190)
T COG2119 35 PVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLI 84 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhc
Confidence 34556667777788888888888888888888888888877777777764
No 19
>PRK11469 hypothetical protein; Provisional
Probab=53.96 E-value=25 Score=31.20 Aligned_cols=50 Identities=12% Similarity=0.286 Sum_probs=38.3
Q ss_pred chhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 019044 27 DYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGI 77 (347)
Q Consensus 27 d~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k~~ 77 (347)
+.-+...-.-+.++|...|..+..++|++- ..+=..+|.+.+.++++++.
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~ 89 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444556667788899999999999999976 55555577888999988754
No 20
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=52.97 E-value=2e+02 Score=26.94 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH
Q 019044 206 VFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAA 285 (347)
Q Consensus 206 ~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~i~~~~~~~l~~~~~~Ga 285 (347)
..++..|++++..-=+=|+.|..+++ .+|.=.....+-+.+.. -|+....++++|+++|-
T Consensus 143 ~~lf~~G~ia~~AMIlPGiSGS~iLl----ilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~Gi 202 (257)
T PF04018_consen 143 LYLFLAGAIAACAMILPGISGSFILL----ILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIGI 202 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHH----HHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHHH
Confidence 44566676666555556777765533 33432222222222211 47788899999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 019044 286 FAGQHVVRKIIAVLGRASIIVF 307 (347)
Q Consensus 286 ~iGa~l~~~l~~~~l~~~~~v~ 307 (347)
..-+|+.+++=+++-+..+..+
T Consensus 203 ~~~skll~~ll~~~~~~t~~~i 224 (257)
T PF04018_consen 203 LLFSKLLSYLLKRYRSQTYAFI 224 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888877766544
No 21
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=50.10 E-value=1.9e+02 Score=25.90 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=13.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHH
Q 019044 128 NIYWKELSLLLYVWLGFLAVQL 149 (347)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~ 149 (347)
.-||+..+..++.+...-.+-+
T Consensus 129 ~~p~~~al~~~~sf~lg~liPl 150 (213)
T PF01988_consen 129 ESPWKAALATFLSFILGGLIPL 150 (213)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4588877766665554444433
No 22
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=47.79 E-value=43 Score=34.44 Aligned_cols=48 Identities=27% Similarity=0.434 Sum_probs=35.9
Q ss_pred HHHHH-HHHHHHhhhcccc-hhhHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 019044 209 CFCGI-VAGMVGGLLGLGG-GFILGPLFLELGIPPQVASATSTFAMTFSS 256 (347)
Q Consensus 209 ~~~g~-~~G~~sgl~GiGG-G~i~vP~L~~~g~~~~~A~ats~~~~~~~s 256 (347)
.++|+ +..++=|-.|-|. ..+..|+|..+|++|-.|.+-++.++....
T Consensus 106 llIg~~FgaflEGAaGFGtP~AI~ApLLVgLGF~PL~AA~l~LIaNtapv 155 (522)
T COG1620 106 LLIGFCFGAFLEGAAGFGTPAAIAAPLLVGLGFNPLKAAGLCLIANTAPV 155 (522)
T ss_pred hhHHHHHHHHHhhhcccCChHHHHHHHHHHcCCChHHHHHHHHHhcCCCc
Confidence 33444 3457888888888 567888888999999999998887665443
No 23
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=47.32 E-value=79 Score=23.81 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=33.9
Q ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 019044 26 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIG 67 (347)
Q Consensus 26 Id~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~ 67 (347)
+=....+=+..++.++..+|..+...+|+..+..+-.+++..
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~ 76 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLL 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 455666777888999999999999999999988777766554
No 24
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=45.18 E-value=1e+02 Score=21.41 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 019044 242 QVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVR 293 (347)
Q Consensus 242 ~~A~ats~~~~~~~s~~~~~~~~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~ 293 (347)
.+.+|...+..........+........-.+.++.+...+++|+..-+|..+
T Consensus 3 DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~ 54 (55)
T PF04066_consen 3 DRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLE 54 (55)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777777777777777777776667778888888888888888777654
No 25
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=44.71 E-value=55 Score=32.63 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 019044 38 LMLGISIGVAFN 49 (347)
Q Consensus 38 ~l~G~~iGv~ln 49 (347)
..+|..++..+.
T Consensus 382 ~~igp~i~G~l~ 393 (455)
T TIGR00892 382 VLIGPPLAGRLV 393 (455)
T ss_pred HHccccceeeee
Confidence 344444444443
No 26
>COG3619 Predicted membrane protein [Function unknown]
Probab=44.25 E-value=67 Score=29.48 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=42.1
Q ss_pred hHHHHHHHhhh-cCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 019044 6 AGSTVYYNLRL-RHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLII 63 (347)
Q Consensus 6 sla~~i~~~~~-~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~v 63 (347)
.+.++-.++-+ -.+.++..+.||-.-..+.+....|++.|+++...+-++.+...-..
T Consensus 148 nl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~ 206 (226)
T COG3619 148 NLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAAL 206 (226)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444444422 22223578899999999999999999999999999998876554443
No 27
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=42.21 E-value=3.2e+02 Score=26.23 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=37.4
Q ss_pred cchhHHHHHHHhhhcCCCC-CCCccchhHHHHHhhHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHhhHHHH
Q 019044 3 MGAAGSTVYYNLRLRHPTL-DMPLIDYDLALLFQPMLMLGISIGVAFN--------VMFADWMVTVLLIILFIGTSTKAL 73 (347)
Q Consensus 3 ~g~sla~~i~~~~~~hp~~-~~plId~~l~l~l~P~~l~G~~iGv~ln--------~~~P~~~l~~l~~vlL~~~~~~~~ 73 (347)
+|.-+++.+.+...+.|.. .+++-+--. .++|..+|..++ .+.|..++..++.+.........+
T Consensus 3 lG~~ia~~~~~~~~~~~~~~p~~~r~~~q-------~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 75 (318)
T PF05145_consen 3 LGPMIAVIIAALFGPLPLRVPRRLRNAGQ-------AILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLL 75 (318)
T ss_pred hHHHHHHHHHHHhCCCccCCCHHHHHHHH-------HHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888886544433 444444433 377888887652 334444444455555555555555
Q ss_pred HH
Q 019044 74 FK 75 (347)
Q Consensus 74 ~k 75 (347)
+|
T Consensus 76 ~r 77 (318)
T PF05145_consen 76 RR 77 (318)
T ss_pred HH
Confidence 44
No 28
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=41.13 E-value=91 Score=27.52 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=38.1
Q ss_pred hhcCCCC-CCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHH
Q 019044 15 RLRHPTL-DMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFK 75 (347)
Q Consensus 15 ~~~hp~~-~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k 75 (347)
.++-|.+ ++..+.|.+..-+.-= ++=...|+.+-..+ +.+..+.+++|.++++|.++.
T Consensus 22 ~~~lp~~~r~kal~~Gi~~A~~lR-~~~i~~~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~ 80 (183)
T PF03741_consen 22 FRKLPPEQRRKALFWGIIGAIVLR-IIFIFLASWLLSIF--PWILLIGGLFLLYIAIKLLHE 80 (183)
T ss_pred HhCCCHHHhhhhHHHhHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 3556665 5667888876543222 22233444554444 669999999999999999865
No 29
>COG2119 Predicted membrane protein [Function unknown]
Probab=39.85 E-value=1.9e+02 Score=25.69 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=50.8
Q ss_pred hhHHHHHHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHH
Q 019044 5 AAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFK 75 (347)
Q Consensus 5 ~sla~~i~~~~~~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k 75 (347)
+.+|++....+..+| ..+=....+=+.++..++...|-+++..+|...+..+=.+++.+.+...+..
T Consensus 118 TQiATIaLaA~~~~~----~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~ 184 (190)
T COG2119 118 TQIATIALAADYHSP----WAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ 184 (190)
T ss_pred HHHHHHHHhhcCCCc----eeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333 4566777888999999999999999999999999998888888887666543
No 30
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.80 E-value=1.5e+02 Score=23.97 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=33.9
Q ss_pred chhHHHHHhhHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHhhHHHHHH
Q 019044 27 DYDLALLFQPMLMLGISIGVAFNVMFA--DWMVTVLLIILFIGTSTKALFK 75 (347)
Q Consensus 27 d~~l~l~l~P~~l~G~~iGv~ln~~~P--~~~l~~l~~vlL~~~~~~~~~k 75 (347)
-|.+..=+.-.+++|+.+|-++-.++- +|-+.+++.+=+..-.....+|
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rs 95 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRS 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888889999999999988774 5766655555454444444444
No 31
>PRK10420 L-lactate permease; Provisional
Probab=36.96 E-value=3.5e+02 Score=28.28 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhcccchh-hHHHHHHhcCCChHHHHHHHHHHHH
Q 019044 210 FCGIVAGMVGGLLGLGGGF-ILGPLFLELGIPPQVASATSTFAMT 253 (347)
Q Consensus 210 ~~g~~~G~~sgl~GiGGG~-i~vP~L~~~g~~~~~A~ats~~~~~ 253 (347)
+.=.+.+++=|..|-|... +..|+|..+|++|-.|+..++....
T Consensus 121 I~~~Fg~FlEg~AGFGtpvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (551)
T PRK10420 121 VGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNT 165 (551)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 3444577999999988865 5566667899999999998887665
No 32
>PRK01844 hypothetical protein; Provisional
Probab=35.87 E-value=1.1e+02 Score=22.89 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019044 275 AFFTLVATFAAFAGQHVVRKIIAVLGRA 302 (347)
Q Consensus 275 ~~l~~~~~~Ga~iGa~l~~~l~~~~l~~ 302 (347)
+...++.++|...|-+++++.-+++++.
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777777777776653
No 33
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=35.79 E-value=3.1e+02 Score=24.20 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019044 272 PYAAFFTLVATFAAFAGQHVVRKIIAVLGR 301 (347)
Q Consensus 272 ~~~~~l~~~~~~Ga~iGa~l~~~l~~~~l~ 301 (347)
.....+.+..++++.+|+.+.+++-+|..+
T Consensus 159 ~~~~~~~~~t~v~~~iG~~iG~kllkKHF~ 188 (189)
T TIGR02185 159 IWAVIMIVLTAVAGIAGVLIGKKLLKKHFE 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556667777788888877777666543
No 34
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=35.69 E-value=99 Score=25.99 Aligned_cols=15 Identities=20% Similarity=0.636 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHH
Q 019044 53 ADWMVTVLLIILFIG 67 (347)
Q Consensus 53 P~~~l~~l~~vlL~~ 67 (347)
|+|.+.++++++++.
T Consensus 21 ~GWwll~~lll~~~~ 35 (146)
T PF14316_consen 21 PGWWLLLALLLLLLI 35 (146)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566665555444443
No 35
>COG1971 Predicted membrane protein [Function unknown]
Probab=35.20 E-value=1.2e+02 Score=27.01 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=30.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 019044 31 ALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGID 78 (347)
Q Consensus 31 ~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k~~~ 78 (347)
.....-+.++|..+|-+++.+..+|-=.+-+ ++|...+.++++.+.+
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf-~lL~~lG~~mI~e~f~ 90 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGF-VLLIILGLKMIIEGFK 90 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 3445566788888888888666665443444 4566677778776543
No 36
>PRK09695 glycolate transporter; Provisional
Probab=34.35 E-value=4e+02 Score=27.95 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhcccchh-hHHHHHHhcCCChHHHHHHHHHHHH
Q 019044 210 FCGIVAGMVGGLLGLGGGF-ILGPLFLELGIPPQVASATSTFAMT 253 (347)
Q Consensus 210 ~~g~~~G~~sgl~GiGGG~-i~vP~L~~~g~~~~~A~ats~~~~~ 253 (347)
+.-.+.+++=|..|-|... +..|+|..+|++|..|+..++....
T Consensus 121 I~~~Fg~FlEg~aGFGtPvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (560)
T PRK09695 121 IGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANT 165 (560)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 3334678999999988865 5556667899999999998877654
No 37
>PRK13747 putative mercury resistance protein; Provisional
Probab=34.28 E-value=1.2e+02 Score=22.74 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=21.0
Q ss_pred hhhcCCCC-CCCccch---hHHHHHhhH-------HHHHHHHHHHHHH
Q 019044 14 LRLRHPTL-DMPLIDY---DLALLFQPM-------LMLGISIGVAFNV 50 (347)
Q Consensus 14 ~~~~hp~~-~~plId~---~l~l~l~P~-------~l~G~~iGv~ln~ 50 (347)
.-+|.|.. ++|.--| .++++..|+ ++.||-.|+++..
T Consensus 3 ~~e~~p~e~~~~~~~YlWg~lAvLTCPCHLpiLa~lLAGTa~Gafl~e 50 (78)
T PRK13747 3 SPERLPSETHKPITGYLWGALAVLTCPCHLPILAAVLAGTTAGAFLGE 50 (78)
T ss_pred CcccCChhhcCcchhhhhHHHHHhcCcchHHHHHHHHccchHHHHHHH
Confidence 34566654 4554444 345555554 5577777777765
No 38
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=32.49 E-value=4.3e+02 Score=25.94 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH
Q 019044 206 VFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAA 285 (347)
Q Consensus 206 ~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~i~~~~~~~l~~~~~~Ga 285 (347)
.....+++..|.+..+.|+..+.++.+.+. .....+ ....++.++..+....-.++|.
T Consensus 12 ~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~---------------a~~v~~-------~~~~~l~~P~~l~~~~q~ilG~ 69 (352)
T COG3180 12 FILLLLSLLGGWLLTLLHVPAAWMLGAPLL---------------AGIVAG-------LRGLTLPLPRGLFKAGQVILGI 69 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---------------HHHHHH-------hccccccCChHHHHHHHHHHHH
Confidence 444566667777777777776666662221 111111 1223445555555555566666
Q ss_pred HHHHHHHHHhHHHHHH
Q 019044 286 FAGQHVVRKIIAVLGR 301 (347)
Q Consensus 286 ~iGa~l~~~l~~~~l~ 301 (347)
.+|+.+....-+...+
T Consensus 70 ~ig~~~t~s~l~~l~~ 85 (352)
T COG3180 70 MIGASLTPSVLDTLKS 85 (352)
T ss_pred HHhhhcCHHHHHHHHH
Confidence 6666666655554444
No 39
>KOG3972 consensus Predicted membrane protein [Function unknown]
Probab=31.59 E-value=89 Score=28.27 Aligned_cols=18 Identities=17% Similarity=0.525 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 019044 206 VFYCFCGIVAGMVGGLLG 223 (347)
Q Consensus 206 ~~~~~~g~~~G~~sgl~G 223 (347)
....+.|+.-|++||++-
T Consensus 108 ~lAyVsGLgfGIiSgvFs 125 (252)
T KOG3972|consen 108 MLAYVSGLGFGIISGVFS 125 (252)
T ss_pred HHHHHhccchhHHHHHHH
Confidence 344566666788887764
No 40
>PTZ00370 STEVOR; Provisional
Probab=30.97 E-value=98 Score=29.44 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 019044 39 MLGISIGVAFNVMFAD---WMVTVLLIILFIGTSTKALFKGIDTWKKET 84 (347)
Q Consensus 39 l~G~~iGv~ln~~~P~---~~l~~l~~vlL~~~~~~~~~k~~~~~~~e~ 84 (347)
++|+..|...+.+.|= .++++++++.|+..=...++|-++.||-|.
T Consensus 242 lagtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~ 290 (296)
T PTZ00370 242 LAGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHEC 290 (296)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4566666666666663 334455555555444445556667776664
No 41
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=28.71 E-value=1.4e+02 Score=29.60 Aligned_cols=11 Identities=45% Similarity=1.084 Sum_probs=8.5
Q ss_pred hhhcCCCCCCC
Q 019044 14 LRLRHPTLDMP 24 (347)
Q Consensus 14 ~~~~hp~~~~p 24 (347)
+|++||+.+||
T Consensus 370 lr~~~p~~~rp 380 (442)
T TIGR00908 370 LRIRRPDMERP 380 (442)
T ss_pred HHhcCCCCCCC
Confidence 47888887776
No 42
>PRK00523 hypothetical protein; Provisional
Probab=28.66 E-value=1.7e+02 Score=21.92 Aligned_cols=26 Identities=15% Similarity=0.108 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019044 276 FFTLVATFAAFAGQHVVRKIIAVLGR 301 (347)
Q Consensus 276 ~l~~~~~~Ga~iGa~l~~~l~~~~l~ 301 (347)
...++.++|...|-+++++.-+++++
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777777665
No 43
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=28.35 E-value=7.2e+02 Score=26.13 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhcc
Q 019044 210 FCGIVAGMVGGLLGL 224 (347)
Q Consensus 210 ~~g~~~G~~sgl~Gi 224 (347)
+..+..|.+.|..|.
T Consensus 397 v~~~~~~~~~g~t~~ 411 (624)
T PF03169_consen 397 VFSIPSGRITGETGI 411 (624)
T ss_pred HHHHHHHHHhhhcCC
Confidence 334444555555555
No 44
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.24 E-value=2.7e+02 Score=24.93 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019044 276 FFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 276 ~l~~~~~~Ga~iGa~l~~~l 295 (347)
...+.-++.+++++++..+-
T Consensus 72 LiIvFllLTaPVaSHaIARA 91 (197)
T PRK12585 72 LAVLFIFLTTPVASHLINRA 91 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444567788887776654
No 45
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=27.60 E-value=5.1e+02 Score=24.20 Aligned_cols=41 Identities=5% Similarity=0.074 Sum_probs=31.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019044 267 DRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVF 307 (347)
Q Consensus 267 g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l~~~~l~~~~~v~ 307 (347)
.++|++...++.+|..+|-...+++.+.+-+++-......|
T Consensus 50 ~~~~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp~~t~~fF 90 (257)
T PF04018_consen 50 KKINLKFLLPLGIGILIGILLFSKVISYLLENYPIPTYSFF 90 (257)
T ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 47888888888998888888888888887666555444433
No 46
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.54 E-value=2.3e+02 Score=22.59 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=17.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhH
Q 019044 32 LLFQPMLMLGISIGVAFNVMFAD 54 (347)
Q Consensus 32 l~l~P~~l~G~~iGv~ln~~~P~ 54 (347)
.-+.-.+++|..+|.+|-..+|.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Confidence 33455678888888888888875
No 47
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=27.21 E-value=7.2e+02 Score=25.81 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhcccchh-hHHHHHHhcCCChHHHHHHHHHHHH
Q 019044 209 CFCGIVAGMVGGLLGLGGGF-ILGPLFLELGIPPQVASATSTFAMT 253 (347)
Q Consensus 209 ~~~g~~~G~~sgl~GiGGG~-i~vP~L~~~g~~~~~A~ats~~~~~ 253 (347)
.+.-.+.+++=|..|.|-.. +..|+|..+|++|..|+..++....
T Consensus 111 lI~~~Fg~flEg~aGFGtpvAI~aplLv~LGf~Pl~Aa~i~Li~ns 156 (530)
T TIGR00795 111 LIGFCFGAFLEGAAGFGTPVAITAAILVGLGFKPLYAAGLCLIANT 156 (530)
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 34444678999999988865 5566777899999999999887554
No 48
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=27.14 E-value=4.8e+02 Score=26.09 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhcccchhh
Q 019044 211 CGIVAGMVGGLLGLGGGFI 229 (347)
Q Consensus 211 ~g~~~G~~sgl~GiGGG~i 229 (347)
.=+.+|.+.|.+. |.|++
T Consensus 293 ~i~AAGif~Gil~-gtgMv 310 (433)
T COG2851 293 LIFAAGIFLGILS-GTGMV 310 (433)
T ss_pred HHHHHHHHhhhhC-CCchH
Confidence 3345566666665 55644
No 49
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=25.63 E-value=3.6e+02 Score=24.70 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=27.9
Q ss_pred CccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHH
Q 019044 24 PLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALF 74 (347)
Q Consensus 24 plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~ 74 (347)
|.+-|=+...+.-.+.++.++|.+++ .|...+++.+++.+.+....+
T Consensus 25 p~l~~~ml~a~l~~~~v~v~ig~l~~----~~~~~~i~gi~~g~l~am~vl 71 (224)
T PF13829_consen 25 PKLPWLMLGAFLGPIAVFVLIGLLFG----SWWYWLIIGILLGLLAAMIVL 71 (224)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444555555555555 777777777777766655544
No 50
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=25.55 E-value=1.2e+02 Score=22.73 Aligned_cols=28 Identities=21% Similarity=0.333 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhHHH------HHHHHHHHHHH
Q 019044 56 MVTVLLIILFIGTSTKA------LFKGIDTWKKE 83 (347)
Q Consensus 56 ~l~~l~~vlL~~~~~~~------~~k~~~~~~~e 83 (347)
++.++++++|+|-+-|. +-|+.+..|++
T Consensus 9 lliIl~IvlllFG~kKLPelgr~lGkair~FK~~ 42 (73)
T PRK02958 9 WLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDG 42 (73)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 34445555555554333 44555555544
No 51
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=25.36 E-value=65 Score=24.63 Aligned_cols=6 Identities=17% Similarity=-0.219 Sum_probs=0.0
Q ss_pred HHHHHH
Q 019044 70 TKALFK 75 (347)
Q Consensus 70 ~~~~~k 75 (347)
++-++|
T Consensus 27 ~ieYrk 32 (81)
T PF00558_consen 27 YIEYRK 32 (81)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333444
No 52
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=25.32 E-value=2.1e+02 Score=26.60 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=28.4
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
.+..|+++|+.++...+..++|+.+|+.++..+
T Consensus 75 la~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~ 107 (241)
T COG0580 75 LAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLL 107 (241)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999777654
No 53
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=23.06 E-value=3.9e+02 Score=23.49 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=8.8
Q ss_pred hcCCChHHHHHHH
Q 019044 236 ELGIPPQVASATS 248 (347)
Q Consensus 236 ~~g~~~~~A~ats 248 (347)
.+|+||-.+.+-+
T Consensus 71 I~GlDP~~~~g~~ 83 (173)
T PF08566_consen 71 IMGLDPFMVYGLA 83 (173)
T ss_pred ccCcCHHHHHHHH
Confidence 4688887766533
No 54
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=22.88 E-value=2.8e+02 Score=21.20 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhHH------HHHHHHHHHHHH
Q 019044 57 VTVLLIILFIGTSTK------ALFKGIDTWKKE 83 (347)
Q Consensus 57 l~~l~~vlL~~~~~~------~~~k~~~~~~~e 83 (347)
+.++++++|+|-+-| .+-|+.+.+|++
T Consensus 10 liIlvivlllFG~kKLPelg~~lGk~i~~FKk~ 42 (81)
T PRK04598 10 LIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKA 42 (81)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHh
Confidence 444445555555433 244555555544
No 55
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=22.82 E-value=6.5e+02 Score=23.76 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=15.3
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHhhH
Q 019044 28 YDLALLFQPMLMLGISIGVAFNVMFAD 54 (347)
Q Consensus 28 ~~l~l~l~P~~l~G~~iGv~ln~~~P~ 54 (347)
|++.+...-.++.-.++|..+..+.-+
T Consensus 84 ~~l~l~ilvatiPa~v~Gl~~~d~i~~ 110 (270)
T COG1968 84 FRLWLKILVATIPAVVLGLLFKDFIKS 110 (270)
T ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHH
Confidence 666665555555555566666554444
No 56
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=22.69 E-value=2.1e+02 Score=22.01 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 019044 71 KALFKGIDTWKKET 84 (347)
Q Consensus 71 ~~~~k~~~~~~~e~ 84 (347)
+.+-|+.+..|++.
T Consensus 29 r~lGk~ir~FK~~~ 42 (84)
T PRK00191 29 RSIGRSMRIFKSEV 42 (84)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555666665543
No 57
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.48 E-value=1.1e+03 Score=27.47 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhhcccchhhHHHHH
Q 019044 210 FCGIVAGMVGGLLGLGGGFILGPLF 234 (347)
Q Consensus 210 ~~g~~~G~~sgl~GiGGG~i~vP~L 234 (347)
+-..++.++-+++|++ ..++|++
T Consensus 67 VGA~LAD~L~~LFGl~--AYLLP~L 89 (1355)
T PRK10263 67 PGAWLADTLFFIFGVM--AYTIPVI 89 (1355)
T ss_pred HHHHHHHHHHHHHhHH--HHHHHHH
Confidence 3445566777777743 3444443
No 58
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=22.26 E-value=6.7e+02 Score=23.68 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=47.7
Q ss_pred hcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHhCC----ccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019044 222 LGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVV-QYYLLDR----FPVPYAAFFTLVATFAAFAGQHVVRKII 296 (347)
Q Consensus 222 ~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~-~~~~~g~----i~~~~~~~l~~~~~~Ga~iGa~l~~~l~ 296 (347)
=|+.-.--.+-..+++|++.++|.=-|-+...++...++. ...+.+. .|+.....-.+.+++-+++.-+...++-
T Consensus 165 PG~SRSGaTI~~~lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~AFvv~~~~I~~ll~~i 244 (270)
T COG1968 165 PGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKFLLRFI 244 (270)
T ss_pred CCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333333334457999999999998888887765554 3444432 3444444444555555555555444444
Q ss_pred HHHHHHHHHHHHH
Q 019044 297 AVLGRASIIVFIL 309 (347)
Q Consensus 297 ~~~l~~~~~v~ll 309 (347)
++.--..|+.+.+
T Consensus 245 ~~~~~~~F~~Yri 257 (270)
T COG1968 245 KRHSFIPFAIYRI 257 (270)
T ss_pred HhCCCeehHHHHH
Confidence 4333233444333
No 59
>PRK11387 S-methylmethionine transporter; Provisional
Probab=22.16 E-value=1.8e+02 Score=29.31 Aligned_cols=13 Identities=0% Similarity=-0.192 Sum_probs=6.6
Q ss_pred HHHHHhhHHHHHH
Q 019044 63 ILFIGTSTKALFK 75 (347)
Q Consensus 63 vlL~~~~~~~~~k 75 (347)
+...+..|+..+|
T Consensus 445 ~~~~~~~~~~~~~ 457 (471)
T PRK11387 445 VALCYGAYYLTQR 457 (471)
T ss_pred HHHHHHHHHHhcc
Confidence 3445555655544
No 60
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=22.16 E-value=7.6e+02 Score=24.28 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Q 019044 205 IVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLD-RFPVPYAAFFTLVATF 283 (347)
Q Consensus 205 ~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g-~i~~~~~~~l~~~~~~ 283 (347)
......++.+.|.++-....=.+.++.|++.. +..+...+ +++.+..+....-.++
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~-----------------------a~v~~~~~~~~~lP~wl~~va~~~i 246 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLG-----------------------AIVHFGGGITIQLPAWLLAVAQALI 246 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-----------------------HHhhcccceeeeCCHHHHHHHHHHH
Confidence 34445556666666666655555555555431 11122111 4556666666777888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019044 284 AAFAGQHVVRKIIAVLGRASIIVFIL 309 (347)
Q Consensus 284 Ga~iGa~l~~~l~~~~l~~~~~v~ll 309 (347)
|..+|.++.+..-....|..+..++.
T Consensus 247 G~~IG~~f~~~~l~~~~r~~~~~~v~ 272 (352)
T COG3180 247 GALIGSRFDRSILREAKRLLPAILVS 272 (352)
T ss_pred HHHHcccccHHHHHHhHhhcchHHHH
Confidence 99999999888777666665554443
No 61
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=22.08 E-value=2.4e+02 Score=23.12 Aligned_cols=53 Identities=13% Similarity=-0.036 Sum_probs=36.6
Q ss_pred CCccchhHHHHHhhH---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhHHHHHH
Q 019044 23 MPLIDYDLALLFQPM---LMLGISIGVAFNVM-FADWMVTVLLIILFIGTSTKALFK 75 (347)
Q Consensus 23 ~plId~~l~l~l~P~---~l~G~~iGv~ln~~-~P~~~l~~l~~vlL~~~~~~~~~k 75 (347)
||.+=|-.+..+.-. -+++......-... +|+.+-.++-..++.|.+.|++-|
T Consensus 62 RP~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vpe~lw~Llg~~vlgy~~~Rs~eK 118 (123)
T PF11351_consen 62 RPALGWVCLLLFAWAFMLDPLWFWARMQAQALQVPEPLWWLLGAGVLGYFGARSQEK 118 (123)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCHHHHHHHHHHHhhhHHHhhHHH
Confidence 899999876555433 44444444444555 899877777688888888888765
No 62
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.91 E-value=2.3e+02 Score=22.60 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhH
Q 019044 280 VATFAAFAGQHVVRKII 296 (347)
Q Consensus 280 ~~~~Ga~iGa~l~~~l~ 296 (347)
..++|.++|-++=.+++
T Consensus 55 pil~G~~lG~WLD~~~~ 71 (100)
T TIGR02230 55 PTLLGVAVGIWLDRHYP 71 (100)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 33444455544444443
No 63
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=21.72 E-value=3.9e+02 Score=24.97 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=18.0
Q ss_pred CcchHHHHHHHhhHHHHHHHHHHHHHHHHhhccc
Q 019044 156 PCSITYWILNALQVPIAVSVALFEAICLYKGTRV 189 (347)
Q Consensus 156 ~cs~~yw~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (347)
+|....++++...=.++....+|.+|.++++.|.
T Consensus 216 s~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P 249 (254)
T PF07857_consen 216 SQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKP 249 (254)
T ss_pred CCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCC
Confidence 4566666666544333334445566666655443
No 64
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.25 E-value=2.8e+02 Score=20.64 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019044 275 AFFTLVATFAAFAGQHVVRKIIAVLGR 301 (347)
Q Consensus 275 ~~l~~~~~~Ga~iGa~l~~~l~~~~l~ 301 (347)
+.+.++-++|...|-+++++.-.++++
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk 34 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLK 34 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555566666666555554
No 65
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=21.06 E-value=2.9e+02 Score=19.07 Aligned_cols=12 Identities=8% Similarity=0.528 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHH
Q 019044 53 ADWMVTVLLIIL 64 (347)
Q Consensus 53 P~~~l~~l~~vl 64 (347)
|++++..+.+++
T Consensus 4 ~El~iI~vvall 15 (53)
T PF02416_consen 4 PELLIILVVALL 15 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555444444433
No 66
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.02 E-value=1.7e+02 Score=21.38 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 019044 278 TLVATFAAFAGQHVVRKIIAVLGR 301 (347)
Q Consensus 278 ~~~~~~Ga~iGa~l~~~l~~~~l~ 301 (347)
.++-++|..+|-+++++.-+++++
T Consensus 4 ilali~G~~~Gff~ar~~~~k~l~ 27 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEKQLK 27 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666555554
No 67
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.98 E-value=1.2e+02 Score=28.78 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhH---HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 019044 39 MLGISIGVAFNVMFAD---WMVTVLLIILFIGTSTKALFKGIDTWK 81 (347)
Q Consensus 39 l~G~~iGv~ln~~~P~---~~l~~l~~vlL~~~~~~~~~k~~~~~~ 81 (347)
++|+..|...+.+.|= .++++++++.|+..=...++|-++.||
T Consensus 246 lagtAAtaA~aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 246 DAERAASAATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4556666666666663 233444444444333334444444444
No 68
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.75 E-value=2e+02 Score=24.92 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 019044 39 MLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKK 82 (347)
Q Consensus 39 l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~~~~~k~~~~~~~ 82 (347)
++|+-.|.-...++-..+-.+++.++|....|+-+.+.++.|+.
T Consensus 9 ~~~~~~~~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~ 52 (173)
T PRK13453 9 VLGAAGGVEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRER 52 (173)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665543444444444555555556666666666665553
No 69
>PRK10726 hypothetical protein; Provisional
Probab=20.46 E-value=2.2e+02 Score=22.75 Aligned_cols=34 Identities=12% Similarity=0.328 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhH
Q 019044 37 MLMLGISIGVAFNVMFADWMVTVLLIILFIGTST 70 (347)
Q Consensus 37 ~~l~G~~iGv~ln~~~P~~~l~~l~~vlL~~~~~ 70 (347)
.+.+..++|+.++.++++.++..+++..+...+.
T Consensus 61 LmPvsVlvGi~l~~Ll~g~l~~s~l~t~l~V~~l 94 (105)
T PRK10726 61 LMPVSVLVGIALHSLLRGKLLYSILFTLLTVGCL 94 (105)
T ss_pred HhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 3456678999999999999998888877776653
No 70
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.45 E-value=3.9e+02 Score=23.84 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHhh
Q 019044 2 IMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFAD---------WMVTVLLIILFIGTS 69 (347)
Q Consensus 2 I~g~sla~~i~~~~~~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~---------~~l~~l~~vlL~~~~ 69 (347)
+...+++..++.+.+| ..=-++-+++-.-...+|.++|..+..++|. -.+..++..++++.+
T Consensus 120 ~Lal~~~~~iyfl~~K------~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~ 190 (194)
T PF11833_consen 120 QLALGLGACIYFLNRK------ERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLV 190 (194)
T ss_pred HHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHH
Done!