Query 019044
Match_columns 347
No_of_seqs 339 out of 1906
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 24.3 1.6E+02 0.0055 28.0 7.3 11 14-24 392-402 (511)
2 2o9g_A Aquaporin Z; integral m 19.0 1.7E+02 0.006 25.4 5.7 32 264-295 74-105 (234)
3 3gd8_A Aquaporin-4; proton exc 18.2 1.9E+02 0.0065 24.9 5.7 32 264-295 74-105 (223)
4 3llq_A Aquaporin Z 2; aquapori 17.9 1.7E+02 0.0059 25.9 5.4 32 264-295 99-130 (256)
5 1j4n_A Aquaporin 1; membrane p 17.9 1.8E+02 0.0063 25.9 5.7 32 264-295 86-117 (271)
6 2w2e_A AQY1, aquaporin, aquapo 17.9 1.8E+02 0.0063 26.1 5.7 32 264-295 120-151 (279)
7 3c02_A Aquaglyceroporin; membr 17.6 2E+02 0.0069 25.3 5.9 33 263-295 77-109 (258)
8 3d9s_A Aquaporin-5, AQP-5; aqu 17.6 1.9E+02 0.0065 25.8 5.7 32 264-295 78-109 (266)
9 2f2b_A Aquaporin AQPM; protein 17.2 1.8E+02 0.0062 25.4 5.4 32 264-295 90-121 (246)
10 3cn5_A Aquaporin; membrane pro 17.1 1.9E+02 0.0066 26.3 5.7 32 264-295 132-163 (304)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=24.33 E-value=1.6e+02 Score=27.98 Aligned_cols=11 Identities=45% Similarity=0.764 Sum_probs=7.3
Q ss_pred hhhcCCCCCCC
Q 019044 14 LRLRHPTLDMP 24 (347)
Q Consensus 14 ~~~~hp~~~~p 24 (347)
.|+|+|+.+||
T Consensus 392 ~r~~~~~~~~~ 402 (511)
T 4djk_A 392 LVLKHPDLKRT 402 (511)
T ss_dssp HHHHCCSCCCS
T ss_pred HHHhCCCCCCC
Confidence 36777776665
No 2
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=18.97 E-value=1.7e+02 Score=25.36 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
...|+++|+.+....+.-++|+.+|+.+...+
T Consensus 74 ~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 74 WAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999887654
No 3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=18.17 E-value=1.9e+02 Score=24.94 Aligned_cols=32 Identities=9% Similarity=0.275 Sum_probs=26.9
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
...|+++|..+....+..++|+.+|+.+...+
T Consensus 74 ~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 74 VCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34588999999999999999999999887653
No 4
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=17.91 E-value=1.7e+02 Score=25.95 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=26.4
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
...|+++|..+....++-++|+.+|+.++..+
T Consensus 99 ~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 99 TVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588899999999999999999999887654
No 5
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=17.89 E-value=1.8e+02 Score=25.87 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=27.6
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
+..|+++|..+....+.-++|+.+|+.++..+
T Consensus 86 ~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 117 (271)
T 1j4n_A 86 LLSCQISVLRAIMYIIAQCVGAIVATAILSGI 117 (271)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688999999999999999999999888764
No 6
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=17.86 E-value=1.8e+02 Score=26.05 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=25.5
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
+..|+++|..+....+.-++|+.+|+.++..+
T Consensus 120 ~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 120 VLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888888877654
No 7
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=17.62 E-value=2e+02 Score=25.34 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=28.4
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
....|+++|..+....+.-++|+.+|+.++..+
T Consensus 77 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 109 (258)
T 3c02_A 77 LSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGL 109 (258)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999988765
No 8
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=17.61 E-value=1.9e+02 Score=25.77 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
...|+++|..+....+.-++|+.+|+.+...+
T Consensus 78 ~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 78 LVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999887764
No 9
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=17.18 E-value=1.8e+02 Score=25.40 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=27.0
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
...|+++|+.+....+.-++|+.+|+.+...+
T Consensus 90 ~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 121 (246)
T 2f2b_A 90 WSVKKFPGREVVPYIIAQLLGAAFGSFIFLQC 121 (246)
T ss_dssp HHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688999999999999999999999887754
No 10
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=17.14 E-value=1.9e+02 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=27.7
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
+..|+++|..+....+.-++|+.+|+.++..+
T Consensus 132 ~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~ 163 (304)
T 3cn5_A 132 FLARKVELLRALVYMIAQCLGAICGVGLVKAF 163 (304)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999888764
Done!