Query 019044
Match_columns 347
No_of_seqs 339 out of 1906
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 10:01:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019044.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019044hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ymga1 f.19.1.1 (A:6-239) Aqu 27.3 45 0.0032 27.0 5.7 33 263-295 70-102 (234)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 18.9 2.3E+02 0.017 23.1 10.4 17 229-245 46-62 (447)
3 d1fx8a_ f.19.1.1 (A:) Glycerol 18.4 1.1E+02 0.0079 24.7 6.5 33 263-295 70-102 (254)
4 d1rc2a_ f.19.1.1 (A:) Aquapori 15.7 79 0.0057 25.1 4.8 34 264-297 71-104 (231)
5 d1j4na_ f.19.1.1 (A:) Aquapori 15.2 1.1E+02 0.0082 24.5 5.7 34 263-296 85-118 (249)
6 d1cola_ f.1.1.1 (A:) Colicin A 11.7 1.1E+02 0.0083 24.0 4.4 22 278-299 174-195 (197)
7 d1q90r_ f.23.12.1 (R:) ISP sub 10.7 89 0.0065 18.0 2.4 25 199-223 6-30 (39)
8 d2yvxa3 f.57.1.1 (A:276-448) M 7.5 1.7E+02 0.012 22.3 3.8 45 213-264 120-165 (173)
9 d1q90g_ f.23.26.1 (G:) PetG su 7.2 1.9E+02 0.014 15.3 3.2 20 29-48 8-27 (30)
10 d2iuba2 f.17.3.1 (A:286-349) M 5.4 46 0.0034 21.1 -0.7 44 30-75 12-62 (64)
No 1
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.25 E-value=45 Score=26.97 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
++..|+++|+......+.-++|+.+|+.+...+
T Consensus 70 ~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (234)
T d1ymga1 70 FLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSV 102 (234)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCChhheeeeeehHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999988765
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=18.85 E-value=2.3e+02 Score=23.08 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=10.8
Q ss_pred hHHHHHHhcCCChHHHH
Q 019044 229 ILGPLFLELGIPPQVAS 245 (347)
Q Consensus 229 i~vP~L~~~g~~~~~A~ 245 (347)
+..|.+...|++..+..
T Consensus 46 ~~~p~~~~~g~s~~~~g 62 (447)
T d1pw4a_ 46 LAMPYLVEQGFSRGDLG 62 (447)
T ss_dssp HHHHHTTSSTTCSSCHH
T ss_pred HHHHHHHHhCcCHHHHH
Confidence 45677666777776553
No 3
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=18.44 E-value=1.1e+02 Score=24.72 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=28.5
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019044 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l 295 (347)
.+..|+++|.......+..++|+.+|+.+...+
T Consensus 70 ~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (254)
T d1fx8a_ 70 LWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 102 (254)
T ss_dssp HHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999988654
No 4
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=15.69 E-value=79 Score=25.10 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=29.6
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019044 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIA 297 (347)
Q Consensus 264 ~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l~~ 297 (347)
+..|+++|+......+..++|+.+|+.+.+-+.+
T Consensus 71 ~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~~ 104 (231)
T d1rc2a_ 71 WAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIAS 104 (231)
T ss_dssp HHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999999998887643
No 5
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.23 E-value=1.1e+02 Score=24.51 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=29.0
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019044 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKII 296 (347)
Q Consensus 263 ~~~~g~i~~~~~~~l~~~~~~Ga~iGa~l~~~l~ 296 (347)
.+..|++++.......+..++|+.+|+.+.+.+-
T Consensus 85 ~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 85 LLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccccchhheeeeeeHHHHHHHHHHhhheeec
Confidence 3456899999999999999999999998877654
No 6
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=11.72 E-value=1.1e+02 Score=24.01 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 019044 278 TLVATFAAFAGQHVVRKIIAVL 299 (347)
Q Consensus 278 ~~~~~~Ga~iGa~l~~~l~~~~ 299 (347)
.+.+++|+++...++..+++..
T Consensus 174 li~~~v~alIdd~~~~~iN~~l 195 (197)
T d1cola_ 174 LLAAVVGALIDDKFADALNNEI 195 (197)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 4556667777776666666544
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.66 E-value=89 Score=18.01 Aligned_cols=25 Identities=12% Similarity=0.006 Sum_probs=15.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhc
Q 019044 199 NWKIHQIVFYCFCGIVAGMVGGLLG 223 (347)
Q Consensus 199 ~~~~~~~~~~~~~g~~~G~~sgl~G 223 (347)
+...+++.-+...|.+++-..|+.+
T Consensus 6 DMgrR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 6 DMNKRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccchhhhhhcc
Confidence 3445555556667777776666544
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=7.53 E-value=1.7e+02 Score=22.33 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=26.9
Q ss_pred HHHHHHHhhhcccchhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019044 213 IVAGMVGGLLGLGGGFILGPLFL-ELGIPPQVASATSTFAMTFSSSMSVVQYY 264 (347)
Q Consensus 213 ~~~G~~sgl~GiGGG~i~vP~L~-~~g~~~~~A~ats~~~~~~~s~~~~~~~~ 264 (347)
++.-.+++++| ..+|+++ .+|.||..+.+ -+....+-..+...|+
T Consensus 120 ~~~~~ia~~~G-----~~lPlll~klg~DPA~aS~--P~itti~Di~g~~iyf 165 (173)
T d2yvxa3 120 VLIVFFANLVG-----AMLPFLLRRLGVDPALVSN--PLVATLSDVTGLLIYL 165 (173)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHTSCCGGGSCS--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHhCCChhhhhh--hHHHHHHHHHHHHHHH
Confidence 33445566655 4688885 78999876543 3444455555555554
No 9
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.25 E-value=1.9e+02 Score=15.28 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=13.6
Q ss_pred hHHHHHhhHHHHHHHHHHHH
Q 019044 29 DLALLFQPMLMLGISIGVAF 48 (347)
Q Consensus 29 ~l~l~l~P~~l~G~~iGv~l 48 (347)
.+++-+.|.++.|-++-+++
T Consensus 8 GivlGlipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 8 GIVLGLVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHH
Confidence 45666777777777666655
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.41 E-value=46 Score=21.06 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH-hhH------HHHHHHHHHHHHHhhHHHHHH
Q 019044 30 LALLFQPMLMLGISIGVAFNVM-FAD------WMVTVLLIILFIGTSTKALFK 75 (347)
Q Consensus 30 l~l~l~P~~l~G~~iGv~ln~~-~P~------~~l~~l~~vlL~~~~~~~~~k 75 (347)
+..++.|++++.++.| +|.- +|+ +.......+.+....+-.++|
T Consensus 12 it~iflP~t~i~gifG--MN~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~f~r 62 (64)
T d2iuba2 12 IATIFMPLTFIAGIYG--MNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKK 62 (64)
T ss_dssp HHHHHHHHHHHTTSCC----------------CHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHhhhc--cCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhc
Done!