BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019047
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 342 bits (878), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 160/275 (58%), Positives = 216/275 (78%), Gaps = 12/275 (4%)
Query: 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGY 140
+++E G D G+NIA++V+QLIG+TPMVYLN + +GCV N+AAKLE MEPC SVKDRIGY
Sbjct: 102 VKRETGPD--GLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGY 159
Query: 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA 200
SM+TDAE+ G I+PGK+VLVEPT+GNTG+G+AF+AA +GY+LI+TMPAS ++ERR+LL+A
Sbjct: 160 SMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKA 219
Query: 201 FGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260
FGAE++LTDP KG+ GA+ KAEEI+ NTP+AYM QQFDN AN KIH+++TGPEIW+DT G
Sbjct: 220 FGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKG 279
Query: 261 CVDIFVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYV 310
VDIFVA RF+K N + +V+GVEP E ++SG AG++
Sbjct: 280 KVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFI 339
Query: 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
P LD +++DEVI ++++EA+ A++LAL+EGL+V
Sbjct: 340 PKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMV 374
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 327 bits (837), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 154/262 (58%), Positives = 203/262 (77%), Gaps = 10/262 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SVKDRIG+SMI+DAE+ G I
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP KG
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXX 273
++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 274 XXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEVI 323
++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 324 KVTNDEAVNMARRLALEEGLLV 345
+V++DE+++MAR+LAL+EGLLV
Sbjct: 245 QVSSDESIDMARQLALKEGLLV 266
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 327 bits (837), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 154/262 (58%), Positives = 203/262 (77%), Gaps = 10/262 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SVKDRIG+SMI+DAE+ G I
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP KG
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXX 273
++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 274 XXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEVI 323
++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV+
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 242
Query: 324 KVTNDEAVNMARRLALEEGLLV 345
+V++DE+++MAR+LAL+EGLLV
Sbjct: 243 QVSSDESIDMARQLALKEGLLV 264
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 325 bits (832), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 153/262 (58%), Positives = 202/262 (77%), Gaps = 10/262 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SV DRIG+SMI+DAE+ G I
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIK 64
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP KG
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXX 273
++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 274 XXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEVI 323
++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 324 KVTNDEAVNMARRLALEEGLLV 345
+V++DE+++MAR+LAL+EGLLV
Sbjct: 245 QVSSDESIDMARQLALKEGLLV 266
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 305 bits (780), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 145/263 (55%), Positives = 195/263 (74%), Gaps = 10/263 (3%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
NI + V+QLIGRTP+VYLNKVTEGC VA K E M+P S+KDR Y+MITDAEE I
Sbjct: 24 NIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLI 83
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
TPGKT L+EPT+GN G+ +AF+AA+KGYK+++TMP+ T+LERR+ +RAFGAE+ILTDP K
Sbjct: 84 TPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAK 143
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
G+ G + KA E++ NTPNA+M QQF N AN ++HF++TGPEIWEDT G VDIFV
Sbjct: 144 GMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSG 203
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSV----------ISGENAGYVPSILDVQLLDEV 322
++LK N +K+ GVEP+E +V I+G G+ P ILD+ ++++V
Sbjct: 204 GTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKV 263
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
++V++++AVNMAR LAL+EGL+V
Sbjct: 264 LEVSSEDAVNMARVLALKEGLMV 286
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/263 (54%), Positives = 194/263 (73%), Gaps = 10/263 (3%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
NI + V+QLIGRTP+VYLNKVTEGC VA K E M+P S+ DR Y+MITDAEE I
Sbjct: 24 NIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLI 83
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
TPGKT L+EPT+GN G+ +AF+AA+KGYK+++TMP+ T+LERR+ +RAFGAE+ILTDP K
Sbjct: 84 TPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAK 143
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
G+ G + KA E++ NTPNA+M QQF N AN ++HF++TGPEIWEDT G VDIFV
Sbjct: 144 GMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSG 203
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSV----------ISGENAGYVPSILDVQLLDEV 322
++LK N +K+ GVEP+E +V I+G G+ P ILD+ ++++V
Sbjct: 204 GTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKV 263
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
++V++++AVNMAR LAL+EGL+V
Sbjct: 264 LEVSSEDAVNMARVLALKEGLMV 286
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/264 (47%), Positives = 173/264 (65%), Gaps = 11/264 (4%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
++IAED+TQLIGRTP+V L +VT+G V ++ AKLE P SVKDRIG +M+ AE++G
Sbjct: 4 MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGL 63
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
I P T+++EPT+GNTG+ +A V A +GY+ ++TMP + +LERR+LLRA+GAE+ILT
Sbjct: 64 IKP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXX 271
G+ GA+ KAEE+ ++ QQF+N AN IH +T E+W DT G VDI VA
Sbjct: 123 DGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGT 182
Query: 272 XXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDE 321
+ +K + V VEPA V+SG AG+VP +LD L+DE
Sbjct: 183 GGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDE 242
Query: 322 VIKVTNDEAVNMARRLALEEGLLV 345
+I V N++A+N+ARRLA EEGLLV
Sbjct: 243 IITVGNEDALNVARRLAREEGLLV 266
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 237 bits (605), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 174/264 (65%), Gaps = 11/264 (4%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
+ IAE++TQLIG TP+V L +VT+G +V AKLES P S+KDRIG +MI AE++G
Sbjct: 5 MTIAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGL 64
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
I P T+++EPT+GNTG+ +A V+A +GYK ++TMP + ++ERR+LLRA+GAE++LT
Sbjct: 65 IKP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA 123
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXX 271
+G+ GA+ KAEE+ ++ QQF+N AN +H +T E+W DT G VDIFV+
Sbjct: 124 EGMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGT 183
Query: 272 XXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDE 321
+ +K + V VEPA V+SG AG+VP +LD+ L+DE
Sbjct: 184 GGTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDE 243
Query: 322 VIKVTNDEAVNMARRLALEEGLLV 345
VI V ND+A+ +ARR+A EEGLLV
Sbjct: 244 VITVGNDDALELARRMATEEGLLV 267
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 237 bits (604), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 125/264 (47%), Positives = 172/264 (65%), Gaps = 11/264 (4%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
++IAED+TQLIGRTP+V L +VT+G V ++ AKLE P SV DRIG +M+ AE++G
Sbjct: 4 MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGL 63
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
I P T+++EPT+GNTG+ +A V A +GY+ ++TMP + +LERR+LLRA+GAE+ILT
Sbjct: 64 IKP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXX 271
G+ GA+ KAEE+ ++ QQF+N AN IH +T E+W DT G VDI VA
Sbjct: 123 DGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGT 182
Query: 272 XXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDE 321
+ +K + V VEPA V+SG AG+VP +LD L+DE
Sbjct: 183 GGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDE 242
Query: 322 VIKVTNDEAVNMARRLALEEGLLV 345
+I V N++A+N+ARRLA EEGLLV
Sbjct: 243 IITVGNEDALNVARRLAREEGLLV 266
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 121/263 (46%), Positives = 172/263 (65%), Gaps = 11/263 (4%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
+ IAE++ QLIG TP+V L +VT+G +V AKLES P S+KDRIG +MI AE++G
Sbjct: 5 MTIAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGL 64
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
I P T+++EPT+GNTG+ +A V+A +GYK ++TMP + ++ERR+LLRA+GAE++LT
Sbjct: 65 IKP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA 123
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXX 271
+G+ GA+ KAEE+ ++ QQF+N AN +H +T E+W DT G VDIFV+
Sbjct: 124 EGMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGT 183
Query: 272 XXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDE 321
+ +K + V VEPA V+SG AG+VP +LD+ L+DE
Sbjct: 184 GGTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDE 243
Query: 322 VIKVTNDEAVNMARRLALEEGLL 344
VI V ND+A+ +ARR+A EEGLL
Sbjct: 244 VITVGNDDALELARRMATEEGLL 266
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 220 bits (561), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 122/270 (45%), Positives = 171/270 (63%), Gaps = 23/270 (8%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I ED + IG TP+V LN++ G + AK+ES P SVK RIG +MI DAE+ G +
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG LVEPT GNTG+ +A+VAA +GYKL +TMP + ++ERR LL+A GA ++LT+ KG
Sbjct: 60 PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 214 LRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
++GA+ KAEEIV + P Y + QQF N AN +IH +TGPEIWEDT G VD+F++
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 273 XXXXXXXRFLKMM--NKEIKVVGVEPAERSVIS----------------GENAGYVPSIL 314
R++K ++ V VEP + VI+ G AG++P L
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNL 238
Query: 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLL 344
D++L+D+V+ +TN+EA++ ARRL EEG+L
Sbjct: 239 DLKLIDKVVGITNEEAISTARRLMEEEGIL 268
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 121/270 (44%), Positives = 170/270 (62%), Gaps = 23/270 (8%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I ED + IG TP+V LN++ G + AK+ES P SV RIG +MI DAE+ G +
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGVLK 59
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG LVEPT GNTG+ +A+VAA +GYKL +TMP + ++ERR LL+A GA ++LT+ KG
Sbjct: 60 PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 214 LRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
++GA+ KAEEIV + P Y + QQF N AN +IH +TGPEIWEDT G VD+F++
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 273 XXXXXXXRFLKMM--NKEIKVVGVEPAERSVIS----------------GENAGYVPSIL 314
R++K ++ V VEP + VI+ G AG++P L
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNL 238
Query: 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLL 344
D++L+D+V+ +TN+EA++ ARRL EEG+L
Sbjct: 239 DLKLIDKVVGITNEEAISTARRLMEEEGIL 268
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 158/262 (60%), Gaps = 11/262 (4%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
N+A+ + QLIG+TP +YLNK+ V K+E P SVKDR+G+++ AE+ G +
Sbjct: 31 NVAQSIDQLIGQTPALYLNKLNN-TKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKL 89
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PGK+V+VE ++GNTG+ +A + A++GYK+I+TMP S +LERR LLR FGAE+ILT
Sbjct: 90 IPGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 149
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
G++GA+ A++IV PNA + QF N IH ++TGPEIWE T VD F+A
Sbjct: 150 GMKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 209
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEV 322
R LK M ++V VEP E V+SG G+VP +LD L+DEV
Sbjct: 210 GTLTGVARALKKMGSHARIVAVEPMESPVLSGGKPGAHKIQGIGPGFVPDVLDRSLIDEV 269
Query: 323 IKVTNDEAVNMARRLALEEGLL 344
V D+A+ A +L +G+
Sbjct: 270 FCVAGDDAIETALKLTRSDGVF 291
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/262 (41%), Positives = 158/262 (60%), Gaps = 11/262 (4%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
N+A+ + QLIG+TP +YLNK+ V K+E P SV DR+G+++ AE+ G +
Sbjct: 10 NVAQSIDQLIGQTPALYLNKLNN-TKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKL 68
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PGK+++VE ++GNTG+ +A + A++GYK+I+TMP S +LERR LLR FGAE+ILT
Sbjct: 69 IPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 128
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
G++GA+ A++IV PNA + QF N IH ++TGPEIWE T VD F+A
Sbjct: 129 GMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 188
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEV 322
R LK M ++V VEP E V+SG G+VP +LD L+DEV
Sbjct: 189 GTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEV 248
Query: 323 IKVTNDEAVNMARRLALEEGLL 344
+ V D+A+ A +L +G+
Sbjct: 249 LCVAGDDAIETALKLTRSDGVF 270
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/263 (43%), Positives = 163/263 (61%), Gaps = 20/263 (7%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK- 156
V IG+TP+V L KV E + V KLE + P S+KDR + MI DAEE G + PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG 216
V+VEPT+GNTG+G+A +AA +GY+LI+TMPA + ER+ +L+AFGAE++LTDPE+ +
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 217 ALDKA----EEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
A ++A EE+ A+M QF N AN++ H+++TGPE++E G +D FV
Sbjct: 123 AREEALRLKEEL-----GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTG 177
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEV 322
R+LK +KV+ VEPA +V+SG G++P LD+ LLD V
Sbjct: 178 GTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGV 237
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
I+V ++A +ARRLA EEGL +
Sbjct: 238 IQVWEEDAFPLARRLAREEGLFL 260
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 146/240 (60%), Gaps = 12/240 (5%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
+T+LIG TP V LN++ + +V KLE M P SVKDRI +MI AE++G + PG T
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGA 217
+ VEPT+GNTG+G+A VAA KGYK ++ MP + +LERR LLRA+GAE++LT +G+RGA
Sbjct: 68 I-VEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 218 LDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXX 277
+ KAEE+V +M QQF N AN +IH +TG EI E +D FVA
Sbjct: 127 IAKAEELVREH-GYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITG 185
Query: 278 XXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEVIKVTN 327
+ L+ IK+ VEPA+ V+SG AG+VP ILD + D VI VT
Sbjct: 186 AGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTT 245
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 160/269 (59%), Gaps = 21/269 (7%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I D + IG TP+V L G GNV K+E P SV RIG +M+ AE+ G +T
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTLT 60
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
GK + V+ T+GNTG+ +A+VAA +GYK+ +TMP + +LER+ LL G ++LT+ KG
Sbjct: 61 KGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 214 LRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
++GA+ KAEEIV + P+ Y M +QF+N AN +IH ++TGPEIW+DT G VD+ VA
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 273 XXXXXXXRFLKM-MNKEIKVVGVEPAERSVIS----------------GENAGYVPSILD 315
R +K+ K+I V VEP E VIS G AG++P LD
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 239
Query: 316 VQLLDEVIKVTNDEAVNMARRLALEEGLL 344
+ ++D V V +D A+ ARRL EEG+L
Sbjct: 240 LSIIDRVETVDSDTALATARRLMAEEGIL 268
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 145/248 (58%), Gaps = 5/248 (2%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
Q IG TP+V L ++ V KLE P SVKDR SMI +AE+ G+I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ GA D
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
A E+ N + QF+N N H+ +TGPEIW+ T G + FV++
Sbjct: 125 LALEMA-NRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 280 RFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKVTNDEAVNMARR 336
RF++ +K + +VG++P E S I G Y+P I + L+DEV+ + +A N R
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRE 243
Query: 337 LALEEGLL 344
LA+ EG+
Sbjct: 244 LAVREGIF 251
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 144/248 (58%), Gaps = 5/248 (2%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
Q IG TP+V L ++ V KLE P SV DR SMI +AE+ G+I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ GA D
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
A E+ N + QF+N N H+ +TGPEIW+ T G + FV++
Sbjct: 125 LALEMA-NRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 280 RFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKVTNDEAVNMARR 336
RF++ +K + +VG++P E S I G Y+P I + L+DEV+ + +A N R
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRE 243
Query: 337 LALEEGLL 344
LA+ EG+
Sbjct: 244 LAVREGIF 251
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 143/248 (57%), Gaps = 5/248 (2%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
Q IG TP+V L ++ + KLE P SVKDR SMI +AE+ G+I PG VL
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ GA D
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
A + + QF+N N H+ +TGPEIW T G + FV++
Sbjct: 125 LALAMS-ERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 280 RFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKVTNDEAVNMARR 336
RFL+ K + +VG++P E S I G A Y+P I + L+DEV+ + ++A N R
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNASLVDEVLDIHQNDAENTMRE 243
Query: 337 LALEEGLL 344
LA+ EG+
Sbjct: 244 LAVREGIF 251
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 143/248 (57%), Gaps = 5/248 (2%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
Q IG TP+V L ++ V KLE P SV DR SMI +AE+ G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGD-VL 64
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ GA D
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
A E+ N + QF+N N K H+ +TGPEIW+ T G + FV++
Sbjct: 125 LALEMA-NRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 280 RFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKVTNDEAVNMARR 336
F++ +K + +VG++P E S I G Y+P I + L+DEV+ + +A N R
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRE 243
Query: 337 LALEEGLL 344
LA+ EG+
Sbjct: 244 LAVREGIF 251
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 151/257 (58%), Gaps = 19/257 (7%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
+LIG TP+V L+ + + KLE P SVKDR MI DAE+ G + G +
Sbjct: 4 RLIGSTPIVRLDSIDS----RIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 56
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
VEPT+GN G+ IA + A +G+++I+TMP + ++ERR +L+ GAE++LT E G++GA++
Sbjct: 57 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 116
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
KA EI T A+M QF+N N+ H +TGPEI + +D FVA
Sbjct: 117 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 175
Query: 280 RFLK-MMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVIKVTND 328
R LK +K+V VEPA+ V+SG AG+VP ILD ++DEVI V ++
Sbjct: 176 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 235
Query: 329 EAVNMARRLALEEGLLV 345
EA MAR LA +EGLLV
Sbjct: 236 EAYEMARYLAKKEGLLV 252
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 151/257 (58%), Gaps = 19/257 (7%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
+LIG TP+V L+ + + KLE P SVKDR MI DAE+ G + G +
Sbjct: 16 RLIGSTPIVRLDSIDS----RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 68
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
VEPT+GN G+ IA + A +G+++I+TMP + ++ERR +L+ GAE++LT E G++GA++
Sbjct: 69 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 128
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
KA EI T A+M QF+N N+ H +TGPEI + +D FVA
Sbjct: 129 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 187
Query: 280 RFLK-MMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVIKVTND 328
R LK +K+V VEPA+ V+SG AG+VP ILD ++DEVI V ++
Sbjct: 188 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 247
Query: 329 EAVNMARRLALEEGLLV 345
EA MAR LA +EGLLV
Sbjct: 248 EAYEMARYLAKKEGLLV 264
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 144/277 (51%), Gaps = 29/277 (10%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
I D+ + IG TPMV +NK+ + G + AK E SVKDRI MI DAE G
Sbjct: 32 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 91
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT-- 208
+ PG T+ +EPT+GNTG+G+A AAV+GY+ I+ MP + E+ +LRA GAEI+ T
Sbjct: 92 TLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 150
Query: 209 -----DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVD 263
PE + A EI PN+++ Q+ N +N H+D+T EI + G +D
Sbjct: 151 NARFDSPESHVGVAWRLKNEI----PNSHILDQYRNASNPLAHYDTTADEILQQCDGKLD 206
Query: 264 IFVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEP-------------AERSVISGENAGY- 309
+ VA+ R LK +++GV+P E++ E GY
Sbjct: 207 MLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYD 266
Query: 310 -VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+P++LD ++D+ K ++EA AR L +EGLL
Sbjct: 267 FIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLC 303
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 144/277 (51%), Gaps = 29/277 (10%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
I D+ + IG TPMV +NK+ + G + AK E SVKDRI MI DAE G
Sbjct: 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 156
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT-- 208
+ PG T+ +EPT+GNTG+G+A AAV+GY+ I+ MP + E+ +LRA GAEI+ T
Sbjct: 157 TLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215
Query: 209 -----DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVD 263
PE + A EI PN+++ Q+ N +N H+D+T EI + G +D
Sbjct: 216 NARFDSPESHVGVAWRLKNEI----PNSHILDQYRNASNPLAHYDTTADEILQQCDGKLD 271
Query: 264 IFVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEP-------------AERSVISGENAGY- 309
+ VA+ R LK +++GV+P E++ E GY
Sbjct: 272 MLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYD 331
Query: 310 -VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+P++LD ++D+ K ++EA AR L +EGLL
Sbjct: 332 FIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLC 368
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 152/271 (56%), Gaps = 23/271 (8%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTE------GCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
I ++ + IG TP+V L+ VTE G + KLE P SVKDR+G++++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKGT--RILVKLEYFNPMSSVKDRVGFNIVYQAI 69
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
+ G + PG + +E T+GNTG+ + AV GY++ + MP++ ++ER+++++AFGAE+IL
Sbjct: 70 KDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 128
Query: 208 TDPEKGLRGALDKAEEIVLNTPNAYMF-QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFV 266
T+ +KG+ GA+++ +++ P Y QF N N H T EIWEDT G VDI V
Sbjct: 129 TEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVV 187
Query: 267 AAXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDV 316
+A LK K IK++ VEP E +V+ G+ AG++P I
Sbjct: 188 SAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKK 247
Query: 317 QLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347
+ +DE+I + +A MAR + +G +MC
Sbjct: 248 EFVDEIIPIKTQDAWKMARAVVKYDG--IMC 276
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 152/271 (56%), Gaps = 23/271 (8%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTE------GCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
I ++ + IG TP+V L+ VTE G + KLE P SVKDR+G++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGT--RILVKLEYFNPMSSVKDRVGFNIVYQAI 70
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
+ G + PG + +E T+GNTG+ + AV GY++ + MP++ ++ER+++++AFGAE+IL
Sbjct: 71 KDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 129
Query: 208 TDPEKGLRGALDKAEEIVLNTPNAYMF-QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFV 266
T+ +KG+ GA+++ +++ P Y QF N N H T EIWEDT G VDI V
Sbjct: 130 TEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVV 188
Query: 267 AAXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDV 316
+A LK K IK++ VEP E +V+ G+ AG++P I
Sbjct: 189 SAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKK 248
Query: 317 QLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347
+ +DE+I + +A MAR + +G +MC
Sbjct: 249 EFVDEIIPIKTQDAWKMARAVVKYDG--IMC 277
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 137/272 (50%), Gaps = 21/272 (7%)
Query: 90 HGVNIAEDVTQLIGRTPMVYLNKV--TEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
H I ++ ++IG TP+V LN + ++G + AK E + P SVKDRIGY M+ DAE
Sbjct: 46 HRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE 105
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
E G + PG T+ +EPT+GNTG+G+A AVKGYK I+ MP + E+ LR GA+II
Sbjct: 106 EQGLLKPGYTI-IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIR 164
Query: 208 TDPEKGL---RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI 264
T E G + A+++ TPN+ + Q+ N N H+D T EI VD+
Sbjct: 165 TPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDM 224
Query: 265 FVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEP---------------AERSVISGENAGY 309
V + R +K ++VGV+P + + G +
Sbjct: 225 IVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDF 284
Query: 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEE 341
P++ D ++D K+ + + M+RRL EE
Sbjct: 285 PPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEE 316
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 133/260 (51%), Gaps = 12/260 (4%)
Query: 96 EDVTQLIGRTPMVYLNKVT-------EGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
+ + Q +G TP+V L +++ +G + AKLE P S+KDR MI AE
Sbjct: 7 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEA 66
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G + PG T+L EPT+GNTG+ +A A +KGY+LI MP +T++ERR LL +GA+II +
Sbjct: 67 DGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFS 125
Query: 209 DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAA 268
E G A+ A+E+ P+ M Q+ N AN H+ TGPE+ D L + FVA
Sbjct: 126 AAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAG 184
Query: 269 XXXXXXXXXXXRFLKMMNKEIKVVGVEPAERS---VISGENAGYVPSILDVQLLDEVIKV 325
RFL+ +K+V EP + + G+VP + D ++L V
Sbjct: 185 LGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVYALRNMDEGFVPELYDPEILTARYSV 244
Query: 326 TNDEAVNMARRLALEEGLLV 345
+AV R L EG+
Sbjct: 245 GAVDAVRRTRELVHTEGIFA 264
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 132/260 (50%), Gaps = 12/260 (4%)
Query: 96 EDVTQLIGRTPMVYLNKVT-------EGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
+ + Q +G TP+V L +++ +G + AKLE P S+ DR MI AE
Sbjct: 8 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEA 67
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G + PG T+L EPT+GNTG+ +A A +KGY+LI MP +T++ERR LL +GA+II +
Sbjct: 68 DGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFS 126
Query: 209 DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAA 268
E G A+ A+E+ P+ M Q+ N AN H+ TGPE+ D L + FVA
Sbjct: 127 AAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAG 185
Query: 269 XXXXXXXXXXXRFLKMMNKEIKVVGVEPAERS---VISGENAGYVPSILDVQLLDEVIKV 325
RFL+ +K+V EP + + G+VP + D ++L V
Sbjct: 186 LGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVYALRNMDEGFVPELYDPEILTARYSV 245
Query: 326 TNDEAVNMARRLALEEGLLV 345
+AV R L EG+
Sbjct: 246 GAVDAVRRTRELVHTEGIFA 265
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 132/260 (50%), Gaps = 12/260 (4%)
Query: 96 EDVTQLIGRTPMVYLNKVT-------EGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
+ + Q +G TP+V L +++ +G + AKLE P S+KDR MI AE
Sbjct: 5 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEA 64
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G + PG T+L EPT+GNTG+ +A A +KGY+LI MP +T++ERR LL +GA+II +
Sbjct: 65 DGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFS 123
Query: 209 DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAA 268
E G A+ A+E+ P+ M Q+ N AN H+ TGPE+ D L + FVA
Sbjct: 124 AAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAG 182
Query: 269 XXXXXXXXXXXRFLKMMNKEIKVVGVEPAERS---VISGENAGYVPSILDVQLLDEVIKV 325
RFL+ + +V EP + + G+VP + D ++L V
Sbjct: 183 LGTTGTLMGTGRFLREHVANVAIVAAEPRYGEGVYALRNMDEGFVPELYDPEILTARYSV 242
Query: 326 TNDEAVNMARRLALEEGLLV 345
+AV R L EG+
Sbjct: 243 GAVDAVRRTRELVHTEGIFA 262
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 18/235 (7%)
Query: 121 VAAKLESMEPCR-SVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKG 179
V KLE P SVKDR +I+ S + G +++ + T+ N G+ ++ VA + G
Sbjct: 112 VWLKLEWYNPFSLSVKDRPAVEIIS--RLSRRVEKG-SLVADATSSNFGVALSAVARLYG 168
Query: 180 YKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ--QF 237
Y+ V +P + ++L R GA++I+ DPE + ++ ++ N QF
Sbjct: 169 YRARVYLPGAAEEFGKLLPRLLGAQVIV-DPEA--PSTVHLLPRVMKDSKNEGFVHVNQF 225
Query: 238 DNMANLKIHFDSTGPEIWEDTL--GCVDIFVAAXXXXXXXXXXXRF-LKMMNKEIKVVGV 294
N AN + H T EI+ + G VA F L+ ++ I+ V V
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLV 285
Query: 295 EPAERSVISG----ENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+PA+ I G E ++LD+ + +VT +EA+ +A +GL++
Sbjct: 286 QPAQGDSIPGIRRVETGMLWINMLDISY--TLAEVTLEEAMEAVVEVARSDGLVI 338
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 18/235 (7%)
Query: 121 VAAKLESMEPCR-SVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKG 179
V KLE P SV DR +I+ S + G +++ + T+ N G+ ++ VA + G
Sbjct: 112 VWLKLEWYNPFSLSVADRPAVEIIS--RLSRRVEKG-SLVADATSSNFGVALSAVARLYG 168
Query: 180 YKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ--QF 237
Y+ V +P + ++L R GA++I+ DPE + ++ ++ N QF
Sbjct: 169 YRARVYLPGAAEEFGKLLPRLLGAQVIV-DPEA--PSTVHLLPRVMKDSKNEGFVHVNQF 225
Query: 238 DNMANLKIHFDSTGPEIWEDTL--GCVDIFVAAXXXXXXXXXXXRF-LKMMNKEIKVVGV 294
N AN + H T EI+ + G VA F L+ ++ I+ V V
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLV 285
Query: 295 EPAERSVISG----ENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+PA+ I G E ++LD+ + +VT +EA+ +A +GL++
Sbjct: 286 QPAQGDSIPGIRRVETGMLWINMLDISY--TLAEVTLEEAMEAVVEVARSDGLVI 338
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTT 164
TP+ + K++ + K E +P S K R Y+M+ E ++ +
Sbjct: 32 TPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHG----VITASA 87
Query: 165 GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
GN G+AF +A G K ++ MP +T + +R FG E++L
Sbjct: 88 GNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 23/122 (18%)
Query: 133 SVKDRIG-YSMITDAE----ESGDITPGK--TVLVEP--------------TTGNTGLGI 171
S+K R G Y ++T AE E+G +T +VL+ P +TGN GL I
Sbjct: 114 SIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSI 173
Query: 172 AFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231
++A G+K+ V M A ++ LR+ G ++ + + G+ A+++ + + PN
Sbjct: 174 GIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNC 231
Query: 232 YM 233
+
Sbjct: 232 FF 233
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 163 TTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206
++GN G+A+ A V G K +V MP + ++ RA+GAE++
Sbjct: 72 SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV 115
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 23/122 (18%)
Query: 133 SVKDRIG-YSMITDAE----ESGDITPGK--TVLVEP--------------TTGNTGLGI 171
S+K R G Y ++T AE E+G +T +VL+ P +TGN GL I
Sbjct: 114 SIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSI 173
Query: 172 AFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231
+A G+K+ V A ++ LR+ G ++ + + G+ A+++ + + PN
Sbjct: 174 GIXSACIGFKVTVHXSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNC 231
Query: 232 YM 233
+
Sbjct: 232 FF 233
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 163 TTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222
+TGN GL I ++A G+K+ V M A ++ LR+ G ++ + + G+ A+++
Sbjct: 167 STGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV--AVEEGR 224
Query: 223 EIVLNTPNAYM 233
+ + PN +
Sbjct: 225 KAAQSDPNCFF 235
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
K T GN G G+A+ A G ++ MP + ER + GAE I+TD
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
K T GN G G+A+ A G ++ MP + ER + GAE I+TD
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
K T GN G G+A+ A G ++ MP + ER + GAE I+TD
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
K T GN G G+A+ A G ++ P + ER + GAE I+TD
Sbjct: 112 KXTFATTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 15/197 (7%)
Query: 102 IGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGY---SMITDAEESGDITPGKTV 158
I +T M N +E C G + K E+M+ S R + S +T+AE+ +
Sbjct: 38 IYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFXIRGAFNKLSSLTEAEK-------RKG 90
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGAL 218
+V + GN G++ A+ G V MP + + AE++L +
Sbjct: 91 VVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDN--FNDTI 148
Query: 219 DKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXX 278
K EIV T +D+ + + G EI ED L VD +
Sbjct: 149 AKVSEIV-ETEGRIFIPPYDDPKVIAGQ-GTIGLEIMED-LYDVDNVIVPIGGGGLIAGI 205
Query: 279 XRFLKMMNKEIKVVGVE 295
+K +N IKV+GV+
Sbjct: 206 AIAIKSINPTIKVIGVQ 222
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR 215
+V ++GN G + + A ++G + +P + +++ ++A+GA I+ ++P R
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYSEPSDESR 135
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR 215
+V ++GN G + + A ++G + +P + +++ ++A+GA I+ +P R
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESR 135
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR 215
+V ++GN G + + A ++G + +P + +++ ++A+GA I+ +P R
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESR 135
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
VT L G TP++ +++ + K+E + P S KDR +TDA + G+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA-----LAHGQR 86
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMP----ASTNLERRILLRAFGAEIILTD 209
++ +TGNT A AA G V +P A L + ++ GA+II D
Sbjct: 87 AVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVM---HGAKIIQID 139
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154
+E + + +TP++ + V + V V K E+ + + K R + ++ E+
Sbjct: 17 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQR--- 73
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGL 214
K ++ ++GN IA A + G + MP + + +G ++I+ D K
Sbjct: 74 -KAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDD 132
Query: 215 RGALDK 220
R + K
Sbjct: 133 REKMAK 138
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
E G ++PG+ VL+ TG G+ +A + G ++ T A ++ +R +L R G E +
Sbjct: 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTT--AGSDAKREMLSR-LGVEYV- 87
Query: 208 TDPEKGLRGALDKAEEIV 225
G ++D A+EI+
Sbjct: 88 -----GDSRSVDFADEIL 100
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 98 VTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155
VT G TP++ + + G G + K E + P S KDR I+ A E+G
Sbjct: 24 VTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAG----- 78
Query: 156 KTVLVEPTTGNT 167
K ++ +TGNT
Sbjct: 79 KRAVICASTGNT 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,406,317
Number of Sequences: 62578
Number of extensions: 303132
Number of successful extensions: 855
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 60
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)