Query 019047
Match_columns 347
No_of_seqs 212 out of 1400
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 1.8E-56 3.9E-61 419.4 28.9 250 97-347 4-264 (300)
2 PLN03013 cysteine synthase 100.0 8E-56 1.7E-60 436.1 32.7 255 93-347 112-376 (429)
3 PLN02565 cysteine synthase 100.0 2E-54 4.4E-59 416.4 31.3 253 95-347 6-268 (322)
4 PLN02556 cysteine synthase/L-3 100.0 2.1E-53 4.6E-58 415.5 31.2 257 91-347 46-312 (368)
5 PRK11761 cysM cysteine synthas 100.0 2.5E-53 5.5E-58 404.6 29.9 250 96-347 4-256 (296)
6 TIGR01136 cysKM cysteine synth 100.0 1.2E-52 2.6E-57 400.6 30.8 248 99-347 2-259 (299)
7 TIGR01138 cysM cysteine syntha 100.0 1.7E-52 3.7E-57 397.9 29.8 248 98-347 2-252 (290)
8 TIGR01139 cysK cysteine syntha 100.0 4.8E-52 1E-56 396.2 30.4 247 99-347 2-259 (298)
9 PLN00011 cysteine synthase 100.0 7E-52 1.5E-56 399.3 30.9 253 95-347 8-270 (323)
10 PRK12391 tryptophan synthase s 100.0 2.3E-51 4.9E-56 407.2 30.0 300 43-347 7-381 (427)
11 PRK10717 cysteine synthase A; 100.0 5.3E-51 1.1E-55 394.3 31.2 252 95-347 4-278 (330)
12 COG1171 IlvA Threonine dehydra 100.0 6.3E-52 1.4E-56 395.2 22.7 246 95-347 16-284 (347)
13 KOG1252 Cystathionine beta-syn 100.0 1.1E-52 2.5E-57 392.5 16.5 256 92-347 40-310 (362)
14 TIGR01415 trpB_rel pyridoxal-p 100.0 6.8E-51 1.5E-55 403.2 29.3 295 47-347 1-372 (419)
15 PLN02970 serine racemase 100.0 6.3E-51 1.4E-55 393.4 27.1 254 75-347 8-282 (328)
16 cd01561 CBS_like CBS_like: Thi 100.0 3.7E-50 8.1E-55 381.9 31.0 244 103-347 1-256 (291)
17 PLN02356 phosphateglycerate ki 100.0 3.1E-50 6.6E-55 396.3 29.5 251 96-347 45-363 (423)
18 PRK08526 threonine dehydratase 100.0 1.2E-50 2.6E-55 400.5 24.4 245 94-347 10-276 (403)
19 PRK07476 eutB threonine dehydr 100.0 1.4E-50 3.1E-55 390.1 23.0 245 94-347 9-277 (322)
20 PRK08198 threonine dehydratase 100.0 3.2E-50 6.9E-55 398.8 26.1 245 94-347 12-278 (404)
21 cd06447 D-Ser-dehyd D-Serine d 100.0 9.8E-50 2.1E-54 392.4 28.1 244 101-347 49-359 (404)
22 PRK06382 threonine dehydratase 100.0 5.4E-50 1.2E-54 397.1 26.2 245 94-347 15-281 (406)
23 PRK12483 threonine dehydratase 100.0 6.2E-50 1.3E-54 404.7 27.1 244 96-347 29-294 (521)
24 PRK08638 threonine dehydratase 100.0 5.4E-50 1.2E-54 387.3 25.1 244 95-347 18-283 (333)
25 PRK06352 threonine synthase; V 100.0 5.1E-50 1.1E-54 390.3 25.0 257 81-347 5-285 (351)
26 TIGR02991 ectoine_eutB ectoine 100.0 1.4E-49 2.9E-54 382.4 27.1 245 94-347 9-277 (317)
27 TIGR02079 THD1 threonine dehyd 100.0 3.9E-50 8.5E-55 398.1 23.7 246 94-347 6-276 (409)
28 PRK07048 serine/threonine dehy 100.0 1.1E-49 2.4E-54 383.7 26.1 256 73-347 3-280 (321)
29 PRK07591 threonine synthase; V 100.0 9.9E-50 2.2E-54 396.6 25.2 259 79-347 66-358 (421)
30 TIGR01137 cysta_beta cystathio 100.0 3.6E-49 7.7E-54 396.5 29.2 251 96-347 3-271 (454)
31 cd06448 L-Ser-dehyd Serine deh 100.0 1.6E-49 3.6E-54 381.7 25.3 240 104-347 1-265 (316)
32 PRK06110 hypothetical protein; 100.0 1.8E-49 3.8E-54 382.5 24.2 245 94-347 11-277 (322)
33 PRK08639 threonine dehydratase 100.0 7.6E-50 1.6E-54 397.6 22.3 247 95-347 16-287 (420)
34 PRK02991 D-serine dehydratase; 100.0 4.9E-49 1.1E-53 391.7 27.9 263 82-347 53-382 (441)
35 PRK06721 threonine synthase; R 100.0 7.6E-49 1.6E-53 382.2 28.3 258 80-347 4-285 (352)
36 TIGR02035 D_Ser_am_lyase D-ser 100.0 4.8E-49 1E-53 390.4 27.0 248 97-347 63-377 (431)
37 PRK08197 threonine synthase; V 100.0 2.2E-49 4.8E-54 391.5 24.3 259 79-347 55-348 (394)
38 TIGR01127 ilvA_1Cterm threonin 100.0 2.9E-49 6.4E-54 389.0 24.8 234 105-347 1-256 (380)
39 PRK07334 threonine dehydratase 100.0 3.7E-49 8E-54 390.9 25.0 245 94-347 13-277 (403)
40 PRK06608 threonine dehydratase 100.0 1.3E-48 2.8E-53 378.4 27.9 253 75-347 4-279 (338)
41 PRK06815 hypothetical protein; 100.0 4.5E-49 9.7E-54 378.9 23.9 245 94-347 10-277 (317)
42 TIGR01124 ilvA_2Cterm threonin 100.0 7.2E-49 1.6E-53 396.7 26.3 244 96-347 9-274 (499)
43 PLN02550 threonine dehydratase 100.0 6.3E-49 1.4E-53 399.9 25.9 243 97-347 102-366 (591)
44 PRK07409 threonine synthase; V 100.0 1.7E-48 3.6E-53 380.2 27.2 258 80-347 7-289 (353)
45 cd01562 Thr-dehyd Threonine de 100.0 5.4E-49 1.2E-53 375.5 23.2 245 94-347 7-273 (304)
46 PRK08246 threonine dehydratase 100.0 1.9E-48 4.2E-53 373.4 26.5 247 76-347 5-273 (310)
47 PRK08813 threonine dehydratase 100.0 2.5E-48 5.5E-53 376.1 27.4 235 94-347 29-284 (349)
48 PRK09224 threonine dehydratase 100.0 2.9E-48 6.3E-53 393.5 26.2 244 96-347 12-277 (504)
49 PRK06260 threonine synthase; V 100.0 4E-48 8.7E-53 382.8 25.0 255 80-347 46-335 (397)
50 cd01563 Thr-synth_1 Threonine 100.0 5.8E-48 1.3E-52 372.0 23.9 253 84-347 3-289 (324)
51 PRK06381 threonine synthase; V 100.0 1.4E-47 3E-52 368.8 25.7 239 100-347 11-288 (319)
52 PRK08329 threonine synthase; V 100.0 4.8E-47 1E-51 368.9 26.9 248 80-347 42-311 (347)
53 PRK04346 tryptophan synthase s 100.0 1E-46 2.2E-51 370.4 28.7 283 60-347 9-352 (397)
54 PLN02569 threonine synthase 100.0 6.7E-47 1.4E-51 380.3 26.9 262 79-347 108-406 (484)
55 PRK13028 tryptophan synthase s 100.0 2.5E-46 5.4E-51 368.1 29.3 283 60-347 13-356 (402)
56 PRK08206 diaminopropionate amm 100.0 1.2E-46 2.6E-51 372.0 25.3 249 95-347 33-342 (399)
57 PRK05638 threonine synthase; V 100.0 1.5E-46 3.2E-51 376.3 26.1 253 79-347 44-323 (442)
58 PRK06450 threonine synthase; V 100.0 2E-46 4.4E-51 362.8 25.4 237 86-347 42-309 (338)
59 KOG1250 Threonine/serine dehyd 100.0 2.1E-46 4.6E-51 355.6 20.9 245 95-347 57-323 (457)
60 PLN02618 tryptophan synthase, 100.0 2.4E-45 5.2E-50 361.3 28.9 281 60-347 17-365 (410)
61 cd00640 Trp-synth-beta_II Tryp 100.0 4.4E-45 9.5E-50 338.4 28.8 214 105-347 1-215 (244)
62 COG1350 Predicted alternative 100.0 3E-46 6.6E-51 346.6 20.5 299 44-347 8-382 (432)
63 PRK13802 bifunctional indole-3 100.0 2.8E-45 6.1E-50 379.1 29.6 284 59-347 276-628 (695)
64 TIGR00260 thrC threonine synth 100.0 1.2E-45 2.6E-50 356.4 20.0 253 85-347 4-291 (328)
65 TIGR00263 trpB tryptophan synt 100.0 3.4E-44 7.3E-49 353.2 27.9 278 65-347 6-344 (385)
66 cd06446 Trp-synth_B Tryptophan 100.0 4.9E-44 1.1E-48 350.0 28.1 254 89-347 17-328 (365)
67 TIGR01747 diampropi_NH3ly diam 100.0 3.3E-44 7.2E-49 351.6 26.7 243 101-347 19-323 (376)
68 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.1E-43 2.4E-48 350.1 27.2 244 101-347 38-342 (396)
69 KOG1251 Serine racemase [Signa 100.0 1.6E-44 3.5E-49 323.9 17.3 245 94-347 15-281 (323)
70 PRK13803 bifunctional phosphor 100.0 4.2E-43 9.1E-48 362.6 27.3 284 59-347 221-564 (610)
71 KOG1481 Cysteine synthase [Ami 100.0 2.8E-43 6E-48 321.0 19.1 253 94-347 39-329 (391)
72 TIGR03844 cysteate_syn cysteat 100.0 1.6E-42 3.5E-47 341.9 25.6 254 80-347 43-347 (398)
73 PF00291 PALP: Pyridoxal-phosp 100.0 2E-42 4.2E-47 329.5 21.3 238 98-347 1-274 (306)
74 PRK03910 D-cysteine desulfhydr 100.0 5.4E-42 1.2E-46 331.6 23.5 246 96-347 7-286 (331)
75 cd06449 ACCD Aminocyclopropane 100.0 6.8E-42 1.5E-46 327.7 22.8 237 105-347 1-275 (307)
76 TIGR01275 ACC_deam_rel pyridox 100.0 9.6E-42 2.1E-46 327.1 23.6 240 101-347 4-269 (311)
77 PRK12390 1-aminocyclopropane-1 100.0 3.7E-41 8E-46 326.6 23.2 247 96-347 7-292 (337)
78 TIGR01274 ACC_deam 1-aminocycl 100.0 1.9E-40 4E-45 321.6 24.7 247 95-347 5-291 (337)
79 COG0133 TrpB Tryptophan syntha 100.0 5.1E-40 1.1E-44 304.7 21.3 279 60-345 7-347 (396)
80 KOG1395 Tryptophan synthase be 100.0 5.4E-40 1.2E-44 307.3 19.3 292 49-345 58-415 (477)
81 PRK14045 1-aminocyclopropane-1 100.0 5.3E-39 1.1E-43 310.5 22.7 244 96-347 13-284 (329)
82 COG0498 ThrC Threonine synthas 100.0 3.1E-36 6.7E-41 295.5 22.6 257 80-347 54-341 (411)
83 PRK09225 threonine synthase; V 99.9 4.9E-26 1.1E-30 227.8 23.9 227 104-347 88-384 (462)
84 cd01560 Thr-synth_2 Threonine 99.9 4.3E-25 9.2E-30 221.1 24.8 229 105-347 88-387 (460)
85 COG2515 Acd 1-aminocyclopropan 99.9 1.1E-24 2.4E-29 202.2 18.6 247 95-347 6-280 (323)
86 COG3048 DsdA D-serine dehydrat 99.9 3.9E-23 8.6E-28 191.2 17.8 249 96-347 70-385 (443)
87 PF00107 ADH_zinc_N: Zinc-bind 90.8 2 4.3E-05 34.9 8.8 87 168-296 3-90 (130)
88 cd08294 leukotriene_B4_DH_like 89.8 4 8.8E-05 38.5 11.2 59 148-209 137-195 (329)
89 TIGR02819 fdhA_non_GSH formald 88.3 5.6 0.00012 39.4 11.3 59 145-206 176-234 (393)
90 COG1063 Tdh Threonine dehydrog 87.7 13 0.00029 36.2 13.4 50 158-209 171-221 (350)
91 PF03808 Glyco_tran_WecB: Glyc 87.3 2.9 6.3E-05 36.6 7.7 120 168-295 13-134 (172)
92 COG0604 Qor NADPH:quinone redu 87.2 7 0.00015 37.9 11.0 57 149-208 137-193 (326)
93 cd08230 glucose_DH Glucose deh 87.1 4.1 8.9E-05 39.4 9.4 53 153-206 171-223 (355)
94 TIGR03366 HpnZ_proposed putati 86.8 4.5 9.8E-05 37.7 9.3 60 145-207 111-170 (280)
95 cd08285 NADP_ADH NADP(H)-depen 86.8 28 0.0006 33.3 15.0 58 147-207 159-216 (351)
96 TIGR03201 dearomat_had 6-hydro 86.7 7.6 0.00016 37.4 11.0 60 145-208 157-216 (349)
97 TIGR02825 B4_12hDH leukotriene 86.0 8.3 0.00018 36.6 10.8 58 148-208 132-189 (325)
98 COG0800 Eda 2-keto-3-deoxy-6-p 85.8 14 0.0003 33.7 11.3 94 138-243 26-119 (211)
99 cd08295 double_bond_reductase_ 85.8 8.8 0.00019 36.6 11.0 57 148-207 145-202 (338)
100 cd08256 Zn_ADH2 Alcohol dehydr 85.6 9.9 0.00021 36.4 11.2 60 145-207 165-224 (350)
101 PRK03659 glutathione-regulated 85.3 34 0.00075 36.0 15.8 97 157-295 401-498 (601)
102 cd08277 liver_alcohol_DH_like 85.1 25 0.00054 34.1 13.9 57 148-207 178-234 (365)
103 TIGR02818 adh_III_F_hyde S-(hy 85.1 34 0.00074 33.2 14.9 57 148-207 179-235 (368)
104 PRK03562 glutathione-regulated 85.0 28 0.00062 36.8 15.1 51 157-210 401-451 (621)
105 PF01210 NAD_Gly3P_dh_N: NAD-d 83.8 2 4.4E-05 36.8 4.9 41 159-202 2-42 (157)
106 cd08274 MDR9 Medium chain dehy 83.7 9.4 0.0002 36.3 10.1 60 145-208 168-227 (350)
107 TIGR00670 asp_carb_tr aspartat 83.6 4.5 9.8E-05 38.9 7.7 52 158-209 152-208 (301)
108 PRK05993 short chain dehydroge 83.6 21 0.00046 33.0 12.1 51 156-209 5-55 (277)
109 cd08293 PTGR2 Prostaglandin re 83.3 15 0.00032 35.0 11.2 59 148-209 146-208 (345)
110 PF05368 NmrA: NmrA-like famil 82.7 5.6 0.00012 35.9 7.7 61 159-222 2-62 (233)
111 PLN03154 putative allyl alcoho 82.7 15 0.00032 35.6 11.1 58 148-208 152-210 (348)
112 cd08292 ETR_like_2 2-enoyl thi 82.3 13 0.00028 34.8 10.3 59 146-207 131-189 (324)
113 cd08233 butanediol_DH_like (2R 82.0 17 0.00036 34.9 11.1 62 144-208 162-223 (351)
114 COG2130 Putative NADP-dependen 81.4 12 0.00025 36.2 9.2 58 147-207 143-201 (340)
115 TIGR02822 adh_fam_2 zinc-bindi 81.1 7.7 0.00017 37.2 8.3 60 144-207 155-214 (329)
116 cd08239 THR_DH_like L-threonin 80.8 15 0.00033 34.9 10.3 62 144-208 153-214 (339)
117 PRK12481 2-deoxy-D-gluconate 3 80.5 12 0.00025 34.2 9.0 69 155-224 8-76 (251)
118 cd06533 Glyco_transf_WecG_TagA 80.4 11 0.00025 32.8 8.5 127 168-304 11-140 (171)
119 TIGR03451 mycoS_dep_FDH mycoth 80.2 17 0.00037 35.1 10.5 58 147-207 169-226 (358)
120 PRK09880 L-idonate 5-dehydroge 79.8 15 0.00033 35.2 10.0 62 144-208 159-220 (343)
121 PRK13656 trans-2-enoyl-CoA red 79.2 29 0.00062 34.7 11.7 98 126-226 13-126 (398)
122 PRK12823 benD 1,6-dihydroxycyc 79.2 12 0.00025 34.1 8.6 56 156-211 9-64 (260)
123 PRK08628 short chain dehydroge 79.1 14 0.00031 33.5 9.2 68 156-223 8-75 (258)
124 cd08287 FDH_like_ADH3 formalde 79.0 24 0.00051 33.6 11.0 58 147-207 161-218 (345)
125 PRK09424 pntA NAD(P) transhydr 79.0 47 0.001 34.4 13.6 52 154-209 164-215 (509)
126 cd08297 CAD3 Cinnamyl alcohol 78.8 21 0.00046 33.8 10.6 55 150-207 161-215 (341)
127 PRK07523 gluconate 5-dehydroge 78.6 12 0.00026 34.0 8.4 69 156-224 11-80 (255)
128 PRK06935 2-deoxy-D-gluconate 3 78.5 15 0.00031 33.5 9.0 68 156-223 16-83 (258)
129 PRK13394 3-hydroxybutyrate deh 78.5 15 0.00032 33.3 9.0 68 156-223 8-76 (262)
130 cd08296 CAD_like Cinnamyl alco 78.4 20 0.00044 34.0 10.3 53 151-207 160-212 (333)
131 cd08281 liver_ADH_like1 Zinc-d 78.3 21 0.00046 34.7 10.6 58 148-208 185-242 (371)
132 PRK10669 putative cation:proto 78.0 43 0.00093 34.8 13.3 97 157-295 418-515 (558)
133 PRK12743 oxidoreductase; Provi 78.0 16 0.00036 33.2 9.2 67 156-222 3-71 (256)
134 PRK08226 short chain dehydroge 77.9 14 0.0003 33.7 8.6 69 156-224 7-75 (263)
135 PRK08993 2-deoxy-D-gluconate 3 77.8 20 0.00044 32.6 9.7 67 156-223 11-77 (253)
136 cd01075 NAD_bind_Leu_Phe_Val_D 77.8 22 0.00048 31.8 9.7 67 136-206 6-76 (200)
137 cd08251 polyketide_synthase po 77.6 30 0.00066 31.6 11.0 59 145-206 111-169 (303)
138 PTZ00354 alcohol dehydrogenase 77.3 28 0.00062 32.5 10.9 56 150-208 136-191 (334)
139 cd08269 Zn_ADH9 Alcohol dehydr 77.3 30 0.00064 32.1 10.9 58 145-206 120-178 (312)
140 PF00106 adh_short: short chai 77.3 15 0.00034 30.7 8.2 70 157-226 2-75 (167)
141 PRK08589 short chain dehydroge 77.2 13 0.00027 34.5 8.3 69 156-224 7-75 (272)
142 TIGR01832 kduD 2-deoxy-D-gluco 77.2 18 0.00039 32.5 9.2 67 156-223 6-72 (248)
143 PRK07109 short chain dehydroge 77.1 12 0.00027 36.0 8.4 70 156-225 9-79 (334)
144 PRK10309 galactitol-1-phosphat 76.8 19 0.00041 34.5 9.6 59 146-207 152-210 (347)
145 PF00185 OTCace: Aspartate/orn 76.6 10 0.00022 32.7 6.9 69 159-238 5-83 (158)
146 PRK10754 quinone oxidoreductas 75.9 39 0.00085 31.7 11.5 57 148-207 134-190 (327)
147 COG1064 AdhP Zn-dependent alco 75.6 13 0.00027 36.5 7.9 62 144-209 156-217 (339)
148 PRK05786 fabG 3-ketoacyl-(acyl 75.5 16 0.00035 32.5 8.3 68 156-224 6-74 (238)
149 PRK06114 short chain dehydroge 75.5 24 0.00053 32.0 9.6 70 156-225 9-80 (254)
150 cd08289 MDR_yhfp_like Yhfp put 75.4 23 0.00051 33.1 9.8 51 154-207 146-196 (326)
151 PRK12937 short chain dehydroge 75.4 22 0.00048 31.7 9.2 69 156-224 6-76 (245)
152 PRK08063 enoyl-(acyl carrier p 75.2 23 0.00051 31.8 9.4 68 156-223 5-74 (250)
153 cd08242 MDR_like Medium chain 74.9 21 0.00045 33.5 9.3 58 146-207 147-204 (319)
154 cd08284 FDH_like_2 Glutathione 74.8 59 0.0013 30.7 12.5 54 150-206 163-216 (344)
155 PRK06139 short chain dehydroge 73.8 15 0.00032 35.5 8.0 71 156-226 8-79 (330)
156 PRK08293 3-hydroxybutyryl-CoA 73.8 75 0.0016 29.8 12.7 30 159-188 6-35 (287)
157 PRK08277 D-mannonate oxidoredu 73.7 20 0.00044 33.0 8.7 68 156-223 11-79 (278)
158 PRK05557 fabG 3-ketoacyl-(acyl 73.6 26 0.00057 31.1 9.2 68 156-223 6-75 (248)
159 COG0078 ArgF Ornithine carbamo 73.1 18 0.00039 34.8 8.0 54 156-209 154-213 (310)
160 cd08250 Mgc45594_like Mgc45594 72.9 45 0.00098 31.3 11.1 56 149-207 134-189 (329)
161 cd08288 MDR_yhdh Yhdh putative 72.8 27 0.00058 32.7 9.4 51 154-207 146-196 (324)
162 cd08300 alcohol_DH_class_III c 72.7 30 0.00065 33.5 10.0 57 148-207 180-236 (368)
163 cd08244 MDR_enoyl_red Possible 72.7 48 0.001 30.9 11.1 57 147-206 135-191 (324)
164 cd08243 quinone_oxidoreductase 72.5 48 0.001 30.6 11.0 55 150-207 138-192 (320)
165 cd08291 ETR_like_1 2-enoyl thi 72.3 41 0.0009 31.7 10.7 51 156-209 144-195 (324)
166 PRK07097 gluconate 5-dehydroge 72.0 23 0.0005 32.4 8.6 68 156-223 11-79 (265)
167 PRK08643 acetoin reductase; Va 72.0 28 0.0006 31.5 9.1 69 156-224 3-72 (256)
168 PRK06128 oxidoreductase; Provi 72.0 33 0.0007 32.3 9.8 68 156-223 56-126 (300)
169 PRK09134 short chain dehydroge 71.9 33 0.00071 31.2 9.5 70 156-225 10-81 (258)
170 PRK06172 short chain dehydroge 71.5 25 0.00053 31.8 8.6 69 156-224 8-77 (253)
171 KOG0025 Zn2+-binding dehydroge 71.2 23 0.00051 34.0 8.2 87 121-210 125-217 (354)
172 PRK12938 acetyacetyl-CoA reduc 71.2 23 0.00051 31.7 8.3 68 156-223 4-73 (246)
173 PF00070 Pyr_redox: Pyridine n 71.1 15 0.00033 27.3 5.9 49 159-207 2-59 (80)
174 PRK07792 fabG 3-ketoacyl-(acyl 70.9 36 0.00078 32.2 9.9 70 156-225 13-84 (306)
175 cd08245 CAD Cinnamyl alcohol d 70.9 29 0.00062 32.7 9.2 58 146-207 154-211 (330)
176 PF00764 Arginosuc_synth: Argi 70.9 40 0.00088 33.6 10.3 126 159-293 1-138 (388)
177 PRK12939 short chain dehydroge 70.5 27 0.00059 31.2 8.6 70 156-225 8-78 (250)
178 PRK12935 acetoacetyl-CoA reduc 70.4 27 0.00058 31.4 8.5 69 156-224 7-77 (247)
179 cd08301 alcohol_DH_plants Plan 70.4 29 0.00064 33.6 9.3 58 148-208 181-238 (369)
180 PRK08278 short chain dehydroge 70.4 34 0.00073 31.6 9.4 67 156-222 7-81 (273)
181 PRK08217 fabG 3-ketoacyl-(acyl 70.4 26 0.00057 31.3 8.4 70 155-224 5-75 (253)
182 cd08253 zeta_crystallin Zeta-c 70.3 56 0.0012 30.0 10.9 55 150-207 140-194 (325)
183 PRK07806 short chain dehydroge 70.2 38 0.00082 30.4 9.5 68 156-223 7-76 (248)
184 cd08261 Zn_ADH7 Alcohol dehydr 69.8 51 0.0011 31.2 10.7 55 147-205 152-206 (337)
185 PRK05876 short chain dehydroge 69.7 27 0.00059 32.4 8.6 68 156-223 7-75 (275)
186 cd08235 iditol_2_DH_like L-idi 69.7 63 0.0014 30.5 11.3 58 145-205 156-213 (343)
187 cd08246 crotonyl_coA_red croto 69.6 25 0.00055 34.3 8.7 55 150-207 189-243 (393)
188 PLN02740 Alcohol dehydrogenase 69.4 45 0.00098 32.5 10.4 57 148-207 192-248 (381)
189 TIGR00696 wecB_tagA_cpsF bacte 69.3 31 0.00067 30.5 8.3 94 169-273 14-112 (177)
190 PRK05396 tdh L-threonine 3-deh 69.3 28 0.00061 33.1 8.8 52 153-207 162-213 (341)
191 cd00401 AdoHcyase S-adenosyl-L 69.2 18 0.00038 36.5 7.5 53 150-206 197-249 (413)
192 PRK12744 short chain dehydroge 69.1 29 0.00064 31.5 8.6 68 156-223 9-81 (257)
193 PRK07454 short chain dehydroge 69.1 27 0.00058 31.3 8.2 68 156-223 7-75 (241)
194 PRK06194 hypothetical protein; 69.0 32 0.0007 31.7 8.9 68 156-223 7-75 (287)
195 PF08659 KR: KR domain; Inter 69.0 23 0.00049 30.9 7.5 71 157-227 2-77 (181)
196 cd08298 CAD2 Cinnamyl alcohol 68.9 28 0.00061 32.7 8.7 58 145-206 158-215 (329)
197 PRK09422 ethanol-active dehydr 68.9 46 0.00099 31.4 10.2 60 145-208 153-213 (338)
198 PRK08303 short chain dehydroge 68.8 33 0.00071 32.6 9.1 69 156-224 9-88 (305)
199 PRK07478 short chain dehydroge 68.7 29 0.00062 31.4 8.4 68 156-223 7-75 (254)
200 PRK07666 fabG 3-ketoacyl-(acyl 68.7 32 0.0007 30.7 8.7 68 156-223 8-76 (239)
201 PRK10083 putative oxidoreducta 68.5 47 0.001 31.4 10.2 60 145-207 151-211 (339)
202 cd08231 MDR_TM0436_like Hypoth 68.5 1.1E+02 0.0024 29.2 13.9 55 149-207 172-227 (361)
203 PRK05866 short chain dehydroge 68.4 27 0.00059 32.8 8.4 68 156-223 41-109 (293)
204 PRK05867 short chain dehydroge 68.3 31 0.00067 31.2 8.5 68 156-223 10-78 (253)
205 PRK06949 short chain dehydroge 68.1 27 0.00058 31.6 8.0 67 156-222 10-77 (258)
206 PRK06701 short chain dehydroge 68.1 43 0.00093 31.4 9.7 68 156-223 47-116 (290)
207 PRK08213 gluconate 5-dehydroge 68.0 31 0.00066 31.3 8.4 68 156-223 13-81 (259)
208 PRK06124 gluconate 5-dehydroge 67.9 31 0.00067 31.2 8.4 70 155-224 11-81 (256)
209 TIGR01751 crot-CoA-red crotony 67.7 34 0.00074 33.6 9.3 56 150-208 185-240 (398)
210 cd08258 Zn_ADH4 Alcohol dehydr 67.7 59 0.0013 30.6 10.5 55 148-204 158-212 (306)
211 cd08278 benzyl_alcohol_DH Benz 67.6 60 0.0013 31.4 10.9 56 149-207 181-236 (365)
212 cd05288 PGDH Prostaglandin deh 67.6 69 0.0015 30.0 11.0 56 149-207 140-196 (329)
213 TIGR00692 tdh L-threonine 3-de 67.5 62 0.0014 30.7 10.8 53 152-207 159-211 (340)
214 cd05285 sorbitol_DH Sorbitol d 67.5 67 0.0015 30.5 11.0 60 145-207 153-212 (343)
215 PRK12429 3-hydroxybutyrate deh 67.3 35 0.00076 30.6 8.7 69 156-224 5-74 (258)
216 PRK06181 short chain dehydroge 67.3 31 0.00066 31.4 8.3 68 156-223 2-70 (263)
217 TIGR02823 oxido_YhdH putative 67.2 38 0.00082 31.7 9.1 53 152-207 142-195 (323)
218 PRK12745 3-ketoacyl-(acyl-carr 67.2 40 0.00088 30.3 9.1 68 156-223 3-72 (256)
219 PRK08703 short chain dehydroge 67.2 65 0.0014 28.7 10.4 32 156-187 7-38 (239)
220 TIGR03206 benzo_BadH 2-hydroxy 67.2 31 0.00067 30.9 8.2 68 156-223 4-72 (250)
221 PRK08085 gluconate 5-dehydroge 67.2 36 0.00077 30.8 8.7 69 156-224 10-79 (254)
222 KOG0024 Sorbitol dehydrogenase 67.1 25 0.00053 34.3 7.6 64 143-209 158-221 (354)
223 PRK08936 glucose-1-dehydrogena 67.1 43 0.00094 30.4 9.3 67 156-222 8-76 (261)
224 cd08276 MDR7 Medium chain dehy 67.0 75 0.0016 29.6 11.1 55 149-207 155-209 (336)
225 PRK05653 fabG 3-ketoacyl-(acyl 67.0 44 0.00095 29.6 9.1 67 156-222 6-73 (246)
226 PRK07890 short chain dehydroge 67.0 33 0.00071 31.0 8.4 69 155-223 5-74 (258)
227 cd08262 Zn_ADH8 Alcohol dehydr 66.9 44 0.00096 31.6 9.6 58 146-206 153-210 (341)
228 cd08282 PFDH_like Pseudomonas 66.8 35 0.00075 33.2 9.0 57 146-205 168-224 (375)
229 PRK08265 short chain dehydroge 66.8 43 0.00092 30.6 9.2 67 156-224 7-73 (261)
230 cd05282 ETR_like 2-enoyl thioe 66.8 51 0.0011 30.6 9.9 56 148-206 132-187 (323)
231 cd08259 Zn_ADH5 Alcohol dehydr 66.8 43 0.00093 31.3 9.4 58 146-206 154-211 (332)
232 PRK05717 oxidoreductase; Valid 66.8 42 0.00091 30.4 9.1 66 155-222 10-75 (255)
233 TIGR02824 quinone_pig3 putativ 66.6 73 0.0016 29.3 10.9 58 147-207 132-189 (325)
234 cd05286 QOR2 Quinone oxidoredu 66.5 72 0.0016 29.1 10.8 56 149-207 131-186 (320)
235 PRK08862 short chain dehydroge 66.4 33 0.00071 31.0 8.2 54 156-209 6-60 (227)
236 PF04127 DFP: DNA / pantothena 66.3 30 0.00066 30.7 7.7 63 157-228 21-83 (185)
237 PRK07035 short chain dehydroge 66.0 37 0.0008 30.6 8.5 68 156-223 9-77 (252)
238 PLN02527 aspartate carbamoyltr 66.0 41 0.00089 32.4 9.1 52 158-209 153-210 (306)
239 COG1751 Uncharacterized conser 66.0 45 0.00098 29.0 8.2 74 130-208 7-89 (186)
240 PRK12826 3-ketoacyl-(acyl-carr 66.0 37 0.00081 30.3 8.5 68 156-223 7-75 (251)
241 PLN02702 L-idonate 5-dehydroge 66.0 47 0.001 32.0 9.7 59 146-207 173-231 (364)
242 PRK07677 short chain dehydroge 65.8 36 0.00079 30.7 8.5 68 156-223 2-70 (252)
243 TIGR03325 BphB_TodD cis-2,3-di 65.3 46 0.001 30.3 9.1 64 156-222 6-70 (262)
244 PRK06500 short chain dehydroge 65.2 50 0.0011 29.5 9.2 53 156-211 7-60 (249)
245 cd05278 FDH_like Formaldehyde 65.1 40 0.00087 31.9 8.9 56 148-206 161-216 (347)
246 PRK06077 fabG 3-ketoacyl-(acyl 65.0 34 0.00073 30.7 8.0 68 156-223 7-76 (252)
247 PRK07814 short chain dehydroge 64.9 37 0.00081 31.0 8.4 70 156-225 11-81 (263)
248 cd08264 Zn_ADH_like2 Alcohol d 64.9 34 0.00074 32.1 8.4 53 145-204 153-205 (325)
249 cd05188 MDR Medium chain reduc 64.9 71 0.0015 28.5 10.2 53 149-205 129-181 (271)
250 cd08299 alcohol_DH_class_I_II_ 64.7 64 0.0014 31.4 10.4 56 147-205 183-238 (373)
251 PRK07791 short chain dehydroge 64.5 45 0.00098 31.1 9.0 69 155-223 6-84 (286)
252 PRK06113 7-alpha-hydroxysteroi 64.1 39 0.00086 30.6 8.4 68 156-223 12-80 (255)
253 cd08270 MDR4 Medium chain dehy 64.1 55 0.0012 30.2 9.5 51 154-207 132-182 (305)
254 PRK06198 short chain dehydroge 63.7 55 0.0012 29.6 9.2 68 156-223 7-76 (260)
255 TIGR02853 spore_dpaA dipicolin 63.6 59 0.0013 30.9 9.6 89 113-205 108-197 (287)
256 smart00822 PKS_KR This enzymat 63.4 52 0.0011 27.0 8.4 65 157-221 2-71 (180)
257 PRK07904 short chain dehydroge 63.4 55 0.0012 29.9 9.2 54 156-209 9-66 (253)
258 PRK08192 aspartate carbamoyltr 63.4 32 0.0007 33.6 7.9 52 158-209 161-218 (338)
259 TIGR02817 adh_fam_1 zinc-bindi 63.3 46 0.00099 31.3 8.9 50 155-207 149-199 (336)
260 cd08240 6_hydroxyhexanoate_dh_ 63.2 81 0.0018 30.0 10.7 52 153-207 174-225 (350)
261 cd05279 Zn_ADH1 Liver alcohol 63.2 69 0.0015 31.0 10.3 54 148-204 177-230 (365)
262 PRK08264 short chain dehydroge 62.9 32 0.00069 30.7 7.4 62 156-223 7-69 (238)
263 cd05284 arabinose_DH_like D-ar 62.9 79 0.0017 29.8 10.5 52 151-206 164-216 (340)
264 KOG0023 Alcohol dehydrogenase, 62.9 27 0.00058 34.1 7.0 60 147-210 175-234 (360)
265 PRK07985 oxidoreductase; Provi 62.6 46 0.001 31.2 8.7 69 156-224 50-121 (294)
266 cd05283 CAD1 Cinnamyl alcohol 62.6 51 0.0011 31.3 9.1 52 152-207 167-218 (337)
267 TIGR02415 23BDH acetoin reduct 62.6 49 0.0011 29.7 8.6 67 157-223 2-69 (254)
268 cd08279 Zn_ADH_class_III Class 62.4 89 0.0019 30.1 10.9 54 148-204 176-229 (363)
269 PRK06138 short chain dehydroge 62.2 53 0.0011 29.4 8.8 67 156-223 6-73 (252)
270 PRK11891 aspartate carbamoyltr 62.2 30 0.00065 35.0 7.6 52 158-209 243-300 (429)
271 cd08255 2-desacetyl-2-hydroxye 61.8 49 0.0011 30.2 8.6 53 146-202 89-142 (277)
272 cd08234 threonine_DH_like L-th 61.7 69 0.0015 30.1 9.8 56 146-204 151-206 (334)
273 cd08254 hydroxyacyl_CoA_DH 6-h 61.6 90 0.002 29.2 10.6 56 149-208 160-215 (338)
274 PF13561 adh_short_C2: Enoyl-( 61.6 37 0.0008 30.6 7.6 47 163-209 4-52 (241)
275 cd08241 QOR1 Quinone oxidoredu 61.4 1.1E+02 0.0024 28.0 11.0 56 149-207 134-189 (323)
276 TIGR01963 PHB_DH 3-hydroxybuty 61.1 45 0.00097 29.9 8.1 68 156-223 2-70 (255)
277 PRK07774 short chain dehydroge 61.1 58 0.0013 29.1 8.9 68 156-223 7-75 (250)
278 PRK08594 enoyl-(acyl carrier p 61.0 66 0.0014 29.4 9.3 70 156-225 8-81 (257)
279 cd08267 MDR1 Medium chain dehy 61.0 53 0.0012 30.3 8.8 54 149-206 138-191 (319)
280 PRK12859 3-ketoacyl-(acyl-carr 61.0 42 0.00092 30.5 8.0 70 156-225 7-90 (256)
281 PRK06947 glucose-1-dehydrogena 61.0 40 0.00086 30.2 7.7 68 156-223 3-72 (248)
282 PRK10538 malonic semialdehyde 61.0 59 0.0013 29.3 8.9 63 157-222 2-65 (248)
283 PRK07502 cyclohexadienyl dehyd 60.9 1.5E+02 0.0033 28.0 14.8 118 159-300 9-129 (307)
284 PRK00779 ornithine carbamoyltr 60.9 34 0.00074 32.9 7.5 61 148-209 146-209 (304)
285 PRK04284 ornithine carbamoyltr 60.8 63 0.0014 31.5 9.4 51 159-209 158-216 (332)
286 PRK09730 putative NAD(P)-bindi 60.5 74 0.0016 28.3 9.4 69 157-225 3-73 (247)
287 PLN02342 ornithine carbamoyltr 60.4 33 0.00073 33.7 7.4 59 149-209 189-251 (348)
288 PF01041 DegT_DnrJ_EryC1: DegT 60.4 21 0.00046 34.7 6.1 54 157-210 41-94 (363)
289 PRK09291 short chain dehydroge 60.3 30 0.00064 31.2 6.8 55 156-210 3-58 (257)
290 PRK05565 fabG 3-ketoacyl-(acyl 60.2 59 0.0013 28.9 8.7 67 156-222 6-74 (247)
291 PF09837 DUF2064: Uncharacteri 60.2 89 0.0019 25.7 8.9 97 171-273 2-99 (122)
292 PRK12771 putative glutamate sy 60.0 20 0.00043 37.3 6.2 54 153-207 135-206 (564)
293 TIGR00658 orni_carb_tr ornithi 59.8 40 0.00086 32.4 7.7 60 149-209 143-208 (304)
294 cd05281 TDH Threonine dehydrog 59.8 54 0.0012 31.2 8.8 52 153-207 162-213 (341)
295 PRK06101 short chain dehydroge 59.7 59 0.0013 29.2 8.6 64 157-223 3-66 (240)
296 PLN02253 xanthoxin dehydrogena 59.7 46 0.00099 30.6 8.0 32 156-187 19-50 (280)
297 cd05280 MDR_yhdh_yhfp Yhdh and 59.7 76 0.0017 29.5 9.7 49 156-207 148-196 (325)
298 PLN02827 Alcohol dehydrogenase 59.6 67 0.0015 31.4 9.6 57 148-207 187-243 (378)
299 PRK08642 fabG 3-ketoacyl-(acyl 59.5 74 0.0016 28.4 9.2 66 156-222 6-71 (253)
300 PRK07066 3-hydroxybutyryl-CoA 59.2 1.8E+02 0.0038 28.2 14.7 31 158-188 9-39 (321)
301 PLN02583 cinnamoyl-CoA reducta 59.0 60 0.0013 30.4 8.8 34 155-188 6-39 (297)
302 cd08272 MDR6 Medium chain dehy 58.9 1.1E+02 0.0024 28.2 10.5 57 148-208 138-194 (326)
303 PRK07231 fabG 3-ketoacyl-(acyl 58.8 75 0.0016 28.3 9.1 66 156-222 6-72 (251)
304 cd08283 FDH_like_1 Glutathione 58.8 85 0.0018 30.7 10.2 58 146-206 176-234 (386)
305 PRK07775 short chain dehydroge 58.8 65 0.0014 29.6 8.9 68 156-223 11-79 (274)
306 PRK09072 short chain dehydroge 58.7 55 0.0012 29.7 8.3 69 156-225 6-75 (263)
307 PRK07062 short chain dehydroge 58.5 68 0.0015 29.1 8.9 70 156-225 9-81 (265)
308 cd08260 Zn_ADH6 Alcohol dehydr 58.2 1.1E+02 0.0023 29.0 10.6 52 149-204 160-211 (345)
309 PRK08339 short chain dehydroge 58.1 57 0.0012 29.9 8.3 71 155-225 8-80 (263)
310 PRK14030 glutamate dehydrogena 58.0 59 0.0013 33.1 8.8 60 135-194 207-274 (445)
311 PRK08306 dipicolinate synthase 57.5 88 0.0019 29.8 9.7 46 158-206 154-199 (296)
312 PRK12825 fabG 3-ketoacyl-(acyl 57.5 83 0.0018 27.8 9.1 67 156-222 7-75 (249)
313 PRK09242 tropinone reductase; 57.3 65 0.0014 29.1 8.5 68 156-223 10-80 (257)
314 PLN02586 probable cinnamyl alc 57.1 58 0.0012 31.6 8.5 55 150-207 179-233 (360)
315 PRK05650 short chain dehydroge 57.0 66 0.0014 29.4 8.6 66 157-222 2-68 (270)
316 smart00829 PKS_ER Enoylreducta 56.8 1.3E+02 0.0029 26.8 10.5 53 148-203 98-150 (288)
317 PRK02102 ornithine carbamoyltr 56.6 74 0.0016 31.0 9.0 52 158-209 157-216 (331)
318 PRK06123 short chain dehydroge 56.5 73 0.0016 28.4 8.7 70 156-225 3-74 (248)
319 cd08265 Zn_ADH3 Alcohol dehydr 56.4 96 0.0021 30.2 10.1 55 150-207 199-253 (384)
320 PRK06182 short chain dehydroge 56.2 1.4E+02 0.003 27.3 10.7 63 156-223 4-66 (273)
321 PF02887 PK_C: Pyruvate kinase 55.9 50 0.0011 26.6 6.7 82 139-228 5-87 (117)
322 PRK12827 short chain dehydroge 55.8 92 0.002 27.6 9.2 68 156-223 7-79 (249)
323 PRK06924 short chain dehydroge 55.7 71 0.0015 28.6 8.4 64 157-221 3-66 (251)
324 PRK07856 short chain dehydroge 55.6 59 0.0013 29.3 7.9 61 156-223 7-67 (252)
325 PRK06180 short chain dehydroge 55.3 80 0.0017 29.1 8.9 66 156-224 5-71 (277)
326 PF13460 NAD_binding_10: NADH( 55.3 38 0.00083 28.8 6.3 57 159-222 2-58 (183)
327 PRK08251 short chain dehydroge 55.3 77 0.0017 28.3 8.6 68 156-223 3-73 (248)
328 PRK08416 7-alpha-hydroxysteroi 55.3 80 0.0017 28.7 8.8 69 156-224 9-80 (260)
329 PRK12747 short chain dehydroge 55.1 57 0.0012 29.4 7.7 55 156-210 5-61 (252)
330 PRK06079 enoyl-(acyl carrier p 55.0 87 0.0019 28.4 9.0 32 156-187 8-41 (252)
331 PLN02918 pyridoxine (pyridoxam 55.0 78 0.0017 33.1 9.3 50 156-205 136-192 (544)
332 cd08249 enoyl_reductase_like e 55.0 67 0.0015 30.6 8.5 50 153-206 153-202 (339)
333 PRK12828 short chain dehydroge 54.8 90 0.0019 27.4 8.9 55 155-209 7-62 (239)
334 KOG1177 Long chain fatty acid 54.8 1.3E+02 0.0029 31.0 10.6 109 120-229 68-180 (596)
335 PF01262 AlaDh_PNT_C: Alanine 54.7 44 0.00096 28.8 6.6 50 157-209 21-70 (168)
336 PRK12748 3-ketoacyl-(acyl-carr 54.6 93 0.002 28.1 9.1 69 156-224 6-88 (256)
337 PRK08220 2,3-dihydroxybenzoate 54.5 72 0.0016 28.6 8.3 60 156-223 9-68 (252)
338 PF11760 CbiG_N: Cobalamin syn 54.5 35 0.00075 26.5 5.1 40 260-299 10-49 (84)
339 PRK06720 hypothetical protein; 54.5 1E+02 0.0022 26.6 8.9 54 156-209 17-71 (169)
340 cd08248 RTN4I1 Human Reticulon 54.5 65 0.0014 30.5 8.3 49 155-207 163-211 (350)
341 COG0026 PurK Phosphoribosylami 54.5 67 0.0015 31.8 8.3 32 158-189 3-34 (375)
342 PRK07063 short chain dehydroge 54.4 79 0.0017 28.6 8.6 68 156-223 8-78 (260)
343 PLN02256 arogenate dehydrogena 54.3 2E+02 0.0044 27.5 15.2 156 158-342 38-196 (304)
344 TIGR01829 AcAcCoA_reduct aceto 54.3 59 0.0013 28.8 7.6 67 157-223 2-70 (242)
345 PRK07831 short chain dehydroge 54.2 95 0.0021 28.1 9.1 70 156-225 18-91 (262)
346 PRK07102 short chain dehydroge 54.1 94 0.002 27.7 9.0 65 157-221 3-69 (243)
347 PRK13376 pyrB bifunctional asp 54.0 90 0.002 32.5 9.6 52 158-209 176-233 (525)
348 PRK12746 short chain dehydroge 54.0 89 0.0019 28.0 8.8 68 156-223 7-76 (254)
349 PRK07576 short chain dehydroge 53.9 81 0.0018 28.8 8.7 69 156-224 10-79 (264)
350 PRK07326 short chain dehydroge 53.9 79 0.0017 28.0 8.4 32 156-187 7-38 (237)
351 cd05195 enoyl_red enoyl reduct 53.4 1.6E+02 0.0035 26.2 10.5 52 148-202 102-153 (293)
352 cd08290 ETR 2-enoyl thioester 53.4 74 0.0016 30.0 8.5 59 150-208 142-201 (341)
353 PRK02255 putrescine carbamoylt 53.3 54 0.0012 32.1 7.5 51 159-209 157-214 (338)
354 PLN02514 cinnamyl-alcohol dehy 53.2 83 0.0018 30.4 9.0 55 149-207 175-230 (357)
355 PRK06200 2,3-dihydroxy-2,3-dih 53.2 97 0.0021 28.1 9.0 65 155-222 6-71 (263)
356 PRK01713 ornithine carbamoyltr 53.1 33 0.00073 33.4 6.1 52 158-209 158-217 (334)
357 PRK08017 oxidoreductase; Provi 53.1 1.3E+02 0.0028 27.0 9.7 50 157-209 4-53 (256)
358 PRK12824 acetoacetyl-CoA reduc 53.0 92 0.002 27.6 8.7 69 157-225 4-74 (245)
359 PRK08261 fabG 3-ketoacyl-(acyl 53.0 1.1E+02 0.0023 30.7 9.9 69 155-225 210-278 (450)
360 cd08236 sugar_DH NAD(P)-depend 52.4 1.6E+02 0.0034 27.8 10.6 54 149-206 154-208 (343)
361 PRK05872 short chain dehydroge 52.2 74 0.0016 29.8 8.2 66 155-223 9-77 (296)
362 TIGR01316 gltA glutamate synth 52.2 54 0.0012 33.1 7.6 51 158-208 274-329 (449)
363 PRK07067 sorbitol dehydrogenas 52.0 1.1E+02 0.0024 27.6 9.1 66 156-223 7-72 (257)
364 PRK07023 short chain dehydroge 51.9 74 0.0016 28.5 7.9 60 157-220 3-62 (243)
365 cd05276 p53_inducible_oxidored 51.7 1.8E+02 0.004 26.4 10.8 55 150-207 135-189 (323)
366 PF12000 Glyco_trans_4_3: Gkyc 51.7 29 0.00063 30.5 4.9 42 247-294 53-94 (171)
367 TIGR01831 fabG_rel 3-oxoacyl-( 51.5 1E+02 0.0022 27.4 8.7 65 159-223 2-68 (239)
368 PRK12779 putative bifunctional 51.3 62 0.0014 36.2 8.5 95 157-272 307-403 (944)
369 TIGR03845 sulfopyru_alph sulfo 50.9 1.6E+02 0.0035 25.3 10.5 88 137-230 45-146 (157)
370 PRK07533 enoyl-(acyl carrier p 50.9 99 0.0021 28.2 8.7 32 156-187 11-44 (258)
371 PRK12384 sorbitol-6-phosphate 50.8 1.1E+02 0.0025 27.4 9.1 67 156-222 3-72 (259)
372 PRK10490 sensor protein KdpD; 50.8 1E+02 0.0022 34.2 10.0 108 156-270 251-375 (895)
373 PRK12562 ornithine carbamoyltr 50.7 42 0.00091 32.8 6.3 52 158-209 158-217 (334)
374 cd05313 NAD_bind_2_Glu_DH NAD( 50.4 1.1E+02 0.0025 28.6 8.9 51 136-186 18-68 (254)
375 PRK07370 enoyl-(acyl carrier p 50.3 1E+02 0.0023 28.1 8.7 70 156-225 7-81 (258)
376 PRK15408 autoinducer 2-binding 50.2 2.4E+02 0.0053 27.1 17.5 146 141-295 71-242 (336)
377 cd00288 Pyruvate_Kinase Pyruva 50.1 1.4E+02 0.003 30.8 10.2 86 134-227 359-449 (480)
378 PRK14804 ornithine carbamoyltr 49.9 55 0.0012 31.6 7.0 37 155-191 153-189 (311)
379 PTZ00079 NADP-specific glutama 49.8 97 0.0021 31.6 8.9 49 135-183 216-264 (454)
380 PRK03515 ornithine carbamoyltr 49.8 42 0.00092 32.8 6.2 52 158-209 158-217 (336)
381 PLN02178 cinnamyl-alcohol dehy 49.6 46 0.00099 32.7 6.5 52 153-207 177-228 (375)
382 cd05289 MDR_like_2 alcohol deh 49.5 1.2E+02 0.0025 27.6 9.0 51 150-204 140-190 (309)
383 TIGR01182 eda Entner-Doudoroff 49.0 2.1E+02 0.0044 25.9 12.2 131 139-293 22-153 (204)
384 PRK08340 glucose-1-dehydrogena 49.0 81 0.0017 28.6 7.7 66 157-223 2-68 (259)
385 COG0300 DltE Short-chain dehyd 48.9 1.1E+02 0.0024 28.9 8.6 67 156-222 7-75 (265)
386 TIGR01830 3oxo_ACP_reduc 3-oxo 48.8 1E+02 0.0022 27.1 8.3 65 159-223 2-68 (239)
387 TIGR00561 pntA NAD(P) transhyd 48.7 68 0.0015 33.3 7.7 49 158-209 166-214 (511)
388 TIGR01064 pyruv_kin pyruvate k 48.5 3.2E+02 0.0069 28.0 13.5 120 171-297 262-405 (473)
389 PRK08690 enoyl-(acyl carrier p 48.3 97 0.0021 28.3 8.2 67 156-223 7-76 (261)
390 PRK05693 short chain dehydroge 48.3 1.7E+02 0.0037 26.7 9.9 50 157-209 3-52 (274)
391 TIGR03590 PseG pseudaminic aci 48.2 2.3E+02 0.005 26.5 10.8 81 121-210 2-88 (279)
392 PRK06483 dihydromonapterin red 48.1 1.6E+02 0.0035 26.1 9.5 52 156-209 3-54 (236)
393 PRK06463 fabG 3-ketoacyl-(acyl 48.1 1.9E+02 0.004 26.0 10.0 64 156-223 8-71 (255)
394 cd02006 TPP_Gcl Thiamine pyrop 47.9 1E+02 0.0022 27.4 7.9 40 154-194 74-116 (202)
395 PRK06940 short chain dehydroge 47.9 1.1E+02 0.0023 28.3 8.5 68 157-226 4-72 (275)
396 PRK06841 short chain dehydroge 47.8 1.1E+02 0.0024 27.4 8.5 32 156-187 16-47 (255)
397 PRK04523 N-acetylornithine car 47.7 87 0.0019 30.6 8.0 45 165-209 185-236 (335)
398 cd08286 FDH_like_ADH2 formalde 47.6 1.8E+02 0.0039 27.5 10.2 54 149-206 161-215 (345)
399 PRK13243 glyoxylate reductase; 47.4 1E+02 0.0022 29.9 8.5 103 157-283 151-255 (333)
400 COG2518 Pcm Protein-L-isoaspar 47.2 61 0.0013 29.5 6.3 110 140-271 58-171 (209)
401 COG0031 CysK Cysteine synthase 47.1 1.9E+02 0.004 27.9 9.9 118 156-299 171-294 (300)
402 cd08273 MDR8 Medium chain dehy 47.0 1.4E+02 0.0031 27.7 9.3 53 150-206 135-187 (331)
403 COG0379 NadA Quinolinate synth 46.7 2.8E+02 0.0062 26.9 13.8 166 160-338 142-317 (324)
404 CHL00194 ycf39 Ycf39; Provisio 46.7 1.1E+02 0.0023 29.0 8.4 32 157-188 2-33 (317)
405 PRK07889 enoyl-(acyl carrier p 46.7 1.2E+02 0.0025 27.7 8.4 68 156-224 8-78 (256)
406 PRK07984 enoyl-(acyl carrier p 46.5 1.3E+02 0.0028 27.7 8.8 70 156-225 7-78 (262)
407 PRK07201 short chain dehydroge 46.3 81 0.0017 33.1 8.2 69 155-223 371-440 (657)
408 PRK08862 short chain dehydroge 46.3 1.9E+02 0.0042 25.9 9.7 73 192-271 19-93 (227)
409 PRK06505 enoyl-(acyl carrier p 46.2 1.1E+02 0.0023 28.4 8.1 69 156-225 8-79 (271)
410 PRK12831 putative oxidoreducta 46.1 79 0.0017 32.1 7.8 51 158-208 283-338 (464)
411 PRK08945 putative oxoacyl-(acy 45.9 1.5E+02 0.0032 26.5 8.9 34 155-188 12-45 (247)
412 COG0137 ArgG Argininosuccinate 45.8 2.1E+02 0.0045 28.6 10.2 131 156-293 5-145 (403)
413 cd02013 TPP_Xsc_like Thiamine 45.7 82 0.0018 27.9 7.0 37 155-192 71-110 (196)
414 PRK12936 3-ketoacyl-(acyl-carr 45.5 1.6E+02 0.0035 26.0 9.1 64 156-222 7-71 (245)
415 PRK06125 short chain dehydroge 45.4 99 0.0021 28.0 7.7 68 156-223 8-77 (259)
416 PF03853 YjeF_N: YjeF-related 45.1 2E+02 0.0044 24.8 9.3 31 156-186 26-59 (169)
417 PLN02686 cinnamoyl-CoA reducta 45.0 96 0.0021 30.2 8.0 33 156-188 54-86 (367)
418 PRK12829 short chain dehydroge 45.0 1.5E+02 0.0032 26.6 8.8 33 155-187 11-43 (264)
419 PRK06197 short chain dehydroge 44.8 1.1E+02 0.0023 28.7 8.1 68 156-223 17-87 (306)
420 cd08263 Zn_ADH10 Alcohol dehyd 44.7 2.6E+02 0.0056 26.8 10.9 52 150-204 183-234 (367)
421 cd08266 Zn_ADH_like1 Alcohol d 44.6 2.5E+02 0.0054 25.9 10.5 56 148-206 160-215 (342)
422 PF02737 3HCDH_N: 3-hydroxyacy 44.5 36 0.00079 29.9 4.4 155 159-342 2-171 (180)
423 TIGR02095 glgA glycogen/starch 44.1 2.4E+02 0.0051 28.4 10.9 29 161-189 16-44 (473)
424 PRK07832 short chain dehydroge 44.0 88 0.0019 28.6 7.2 49 157-205 2-51 (272)
425 PRK07200 aspartate/ornithine c 43.8 95 0.0021 31.1 7.7 44 166-209 205-254 (395)
426 PRK08267 short chain dehydroge 43.5 1.1E+02 0.0025 27.5 7.8 64 157-223 3-68 (260)
427 COG0240 GpsA Glycerol-3-phosph 43.4 34 0.00073 33.4 4.3 30 159-188 4-33 (329)
428 COG2242 CobL Precorrin-6B meth 43.2 1.4E+02 0.0031 26.6 7.9 126 153-297 33-162 (187)
429 TIGR00936 ahcY adenosylhomocys 43.1 78 0.0017 31.8 7.0 97 150-274 190-286 (406)
430 PRK05875 short chain dehydroge 42.8 1.3E+02 0.0029 27.3 8.2 68 156-223 8-78 (276)
431 cd08238 sorbose_phosphate_red 42.7 84 0.0018 31.1 7.3 59 149-209 170-238 (410)
432 PLN02986 cinnamyl-alcohol dehy 42.7 1.4E+02 0.003 28.1 8.5 37 155-191 5-41 (322)
433 PLN03050 pyridoxine (pyridoxam 42.7 82 0.0018 29.3 6.7 34 156-189 61-97 (246)
434 PRK06914 short chain dehydroge 42.6 2E+02 0.0044 26.2 9.5 33 156-188 4-36 (280)
435 KOG1197 Predicted quinone oxid 42.6 1.6E+02 0.0034 28.1 8.3 55 147-204 139-193 (336)
436 PRK07024 short chain dehydroge 42.4 1.3E+02 0.0029 27.1 8.1 65 156-224 3-71 (257)
437 PF00091 Tubulin: Tubulin/FtsZ 42.4 82 0.0018 28.3 6.6 91 242-335 94-204 (216)
438 cd08268 MDR2 Medium chain dehy 42.2 2.7E+02 0.0059 25.4 10.9 54 149-205 139-192 (328)
439 cd02000 TPP_E1_PDC_ADC_BCADC T 42.2 1.3E+02 0.0028 28.5 8.2 73 156-228 127-217 (293)
440 PRK06202 hypothetical protein; 42.1 35 0.00076 30.9 4.1 38 262-299 62-99 (232)
441 PRK07531 bifunctional 3-hydrox 41.9 2.9E+02 0.0064 28.3 11.2 30 159-188 7-36 (495)
442 KOG1201 Hydroxysteroid 17-beta 41.9 3.2E+02 0.007 26.3 10.5 73 155-229 38-113 (300)
443 PRK08415 enoyl-(acyl carrier p 41.9 1.4E+02 0.003 27.7 8.3 68 156-225 6-77 (274)
444 cd08271 MDR5 Medium chain dehy 41.8 2.8E+02 0.0061 25.4 10.4 56 148-207 135-190 (325)
445 PRK08159 enoyl-(acyl carrier p 41.5 1.5E+02 0.0033 27.3 8.4 69 156-225 11-82 (272)
446 PRK07060 short chain dehydroge 41.4 2.2E+02 0.0049 25.1 9.4 51 156-209 10-61 (245)
447 PRK07453 protochlorophyllide o 41.4 1.4E+02 0.003 28.2 8.3 69 155-223 6-75 (322)
448 PRK06482 short chain dehydroge 41.4 1.9E+02 0.0041 26.4 9.0 63 156-221 3-66 (276)
449 TIGR02685 pter_reduc_Leis pter 41.2 2.8E+02 0.006 25.2 11.0 30 157-186 3-32 (267)
450 PRK07825 short chain dehydroge 41.2 1.8E+02 0.004 26.4 8.9 63 156-223 6-70 (273)
451 PF01494 FAD_binding_3: FAD bi 41.2 35 0.00076 32.0 4.1 31 158-188 3-33 (356)
452 PLN02925 4-hydroxy-3-methylbut 41.1 4E+02 0.0086 28.9 11.9 101 247-347 614-729 (733)
453 PLN03139 formate dehydrogenase 40.9 2.4E+02 0.0053 28.1 10.1 115 157-295 200-316 (386)
454 PF13478 XdhC_C: XdhC Rossmann 40.8 37 0.0008 28.6 3.7 31 159-189 1-31 (136)
455 cd08275 MDR3 Medium chain dehy 40.7 2E+02 0.0044 26.5 9.3 58 148-208 132-189 (337)
456 PF02254 TrkA_N: TrkA-N domain 40.5 1.8E+02 0.0038 22.7 8.1 47 159-208 1-47 (116)
457 PRK09135 pteridine reductase; 40.5 1.9E+02 0.004 25.6 8.7 69 156-224 7-78 (249)
458 PRK07550 hypothetical protein; 40.2 3.1E+02 0.0067 26.5 10.8 76 131-210 67-143 (386)
459 PRK03692 putative UDP-N-acetyl 40.2 1.4E+02 0.0031 27.6 7.9 122 169-304 70-198 (243)
460 CHL00149 odpA pyruvate dehydro 40.1 1.7E+02 0.0037 28.5 8.8 73 155-228 157-248 (341)
461 cd08252 AL_MDR Arginate lyase 40.0 2E+02 0.0043 26.9 9.1 50 155-207 150-200 (336)
462 PRK15438 erythronate-4-phospha 39.7 76 0.0016 31.6 6.3 55 132-187 89-147 (378)
463 cd08232 idonate-5-DH L-idonate 39.4 2.1E+02 0.0045 26.9 9.2 48 154-204 165-212 (339)
464 KOG1205 Predicted dehydrogenas 39.4 1.7E+02 0.0037 27.9 8.3 70 156-225 13-85 (282)
465 PRK05854 short chain dehydroge 39.4 1.4E+02 0.0031 28.2 8.0 32 156-187 15-46 (313)
466 PF02826 2-Hacid_dh_C: D-isome 39.1 59 0.0013 28.3 4.9 114 157-296 37-153 (178)
467 PRK06348 aspartate aminotransf 39.0 3.4E+02 0.0074 26.3 10.9 77 129-209 64-141 (384)
468 TIGR02622 CDP_4_6_dhtase CDP-g 38.9 1.6E+02 0.0034 28.2 8.4 33 156-188 5-37 (349)
469 PRK06484 short chain dehydroge 38.9 1.6E+02 0.0035 29.8 8.8 68 155-224 5-72 (520)
470 PRK09186 flagellin modificatio 38.8 1.7E+02 0.0038 26.1 8.2 33 155-187 4-36 (256)
471 COG0299 PurN Folate-dependent 38.5 46 0.001 30.0 4.1 34 264-297 3-36 (200)
472 PRK13581 D-3-phosphoglycerate 38.4 1.7E+02 0.0036 30.4 8.9 104 157-284 141-246 (526)
473 TIGR01289 LPOR light-dependent 38.4 1.5E+02 0.0032 28.1 8.0 68 156-223 4-73 (314)
474 PF02887 PK_C: Pyruvate kinase 38.3 1.2E+02 0.0027 24.3 6.4 82 250-343 7-89 (117)
475 PRK12742 oxidoreductase; Provi 38.3 2E+02 0.0044 25.3 8.5 52 156-209 7-59 (237)
476 cd05211 NAD_bind_Glu_Leu_Phe_V 38.2 1.5E+02 0.0032 27.0 7.5 51 137-187 4-54 (217)
477 PLN02896 cinnamyl-alcohol dehy 38.0 1.9E+02 0.0041 27.7 8.8 34 155-188 10-43 (353)
478 KOG1176 Acyl-CoA synthetase [L 37.8 3.3E+02 0.0073 28.4 10.9 91 121-211 37-128 (537)
479 PRK15469 ghrA bifunctional gly 37.8 2.7E+02 0.0058 26.8 9.6 104 157-284 137-242 (312)
480 PLN02989 cinnamyl-alcohol dehy 37.7 2E+02 0.0043 27.0 8.8 34 155-188 5-38 (325)
481 PF00731 AIRC: AIR carboxylase 37.7 2.6E+02 0.0056 24.1 8.4 70 215-297 13-87 (150)
482 cd02010 TPP_ALS Thiamine pyrop 37.6 1.6E+02 0.0034 25.6 7.4 36 155-190 66-103 (177)
483 PRK06567 putative bifunctional 37.5 86 0.0019 35.3 6.7 32 157-188 384-415 (1028)
484 PRK09126 hypothetical protein; 37.5 41 0.00089 32.7 4.1 29 159-187 6-34 (392)
485 PLN00198 anthocyanidin reducta 37.5 2E+02 0.0044 27.2 8.8 37 156-192 10-46 (338)
486 PRK07041 short chain dehydroge 37.5 1.1E+02 0.0025 26.8 6.7 62 159-223 1-65 (230)
487 PRK00257 erythronate-4-phospha 37.5 86 0.0019 31.2 6.3 55 132-187 89-147 (381)
488 COG4558 ChuT ABC-type hemin tr 37.4 1.5E+02 0.0032 28.4 7.4 23 191-213 111-133 (300)
489 PRK07574 formate dehydrogenase 37.0 2.9E+02 0.0063 27.5 9.9 106 157-284 193-300 (385)
490 PTZ00345 glycerol-3-phosphate 37.0 59 0.0013 32.1 5.0 34 156-189 11-51 (365)
491 PRK06997 enoyl-(acyl carrier p 36.9 1.7E+02 0.0038 26.6 8.0 69 156-225 7-78 (260)
492 PRK14805 ornithine carbamoyltr 36.7 1.1E+02 0.0023 29.5 6.6 51 159-209 150-207 (302)
493 cd02004 TPP_BZL_OCoD_HPCL Thia 36.6 2.5E+02 0.0054 23.9 8.5 33 156-189 67-102 (172)
494 COG1587 HemD Uroporphyrinogen- 36.6 2.6E+02 0.0056 25.6 9.1 123 168-299 86-215 (248)
495 PRK06953 short chain dehydroge 36.3 2.8E+02 0.006 24.3 9.0 50 157-209 3-52 (222)
496 PRK12810 gltD glutamate syntha 36.1 1.5E+02 0.0032 30.0 8.0 51 157-207 144-212 (471)
497 PF03807 F420_oxidored: NADP o 36.0 1.5E+02 0.0032 22.4 6.3 47 160-208 3-53 (96)
498 PRK09147 succinyldiaminopimela 36.0 4.2E+02 0.0091 25.8 11.3 79 130-210 64-146 (396)
499 PRK08263 short chain dehydroge 35.8 2.6E+02 0.0057 25.5 9.0 64 156-222 4-68 (275)
500 PRK06847 hypothetical protein; 35.7 47 0.001 32.0 4.1 30 158-187 6-35 (375)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-56 Score=419.45 Aligned_cols=250 Identities=51% Similarity=0.838 Sum_probs=235.3
Q ss_pred hhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHH
Q 019047 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (347)
Q Consensus 97 ~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (347)
.+.+.+++|||++++++....+++||+|+|++||+||.|||.|.+++.+|+++|.++||. +|||+|+||+|.+||+.|+
T Consensus 4 ~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa 82 (300)
T COG0031 4 SILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAA 82 (300)
T ss_pred chHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHH
Confidence 467788999999999999888899999999999999999999999999999999999996 5899999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCC-hHHHHHHHHHHHHcCCC-ceecCCCCChHHHHHHHHHHHHHH
Q 019047 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG-LRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 177 ~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~-~~~a~~~a~~~a~~~~~-~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
.+|++++++||++++.+|+++|+.|||+|+.++...+ +.++++++.+++++.|+ .++.+||+|+.|+..||.|+|.||
T Consensus 83 ~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI 162 (300)
T COG0031 83 AKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEI 162 (300)
T ss_pred HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHH
Confidence 9999999999999999999999999999999997444 88999999999999988 777889999999999999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc---------cCCCCCCCchhccccccCeEEEe
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI---------SGENAGYVPSILDVQLLDEVIKV 325 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~---------~g~~~~~~p~~l~~~~vd~~v~V 325 (347)
++|+++.+|+||+++||||+++|++++||+.+|++++|+|||.++.++ .|...+++|..+..+.+|+++.|
T Consensus 163 ~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V 242 (300)
T COG0031 163 WQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRV 242 (300)
T ss_pred HHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEEE
Confidence 999988899999999999999999999999999999999999987555 34567889988888999999999
Q ss_pred CHHHHHHHHHHHHHhcCccccC
Q 019047 326 TNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 326 sd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+|+++++++|+++|||++|+
T Consensus 243 ~d~~A~~~~r~La~~eGilvG~ 264 (300)
T COG0031 243 SDEEAIATARRLAREEGLLVGI 264 (300)
T ss_pred CHHHHHHHHHHHHHHhCeeecc
Confidence 9999999999999999999996
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=8e-56 Score=436.05 Aligned_cols=255 Identities=65% Similarity=1.100 Sum_probs=236.2
Q ss_pred chhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHH
Q 019047 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (347)
Q Consensus 93 ~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (347)
...+++.+.+++|||++++.+.+..|++||+|+|++|||||||||+|.+++..++++|.+.+|++.||++|+||||.|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 35678899999999999999988878899999999999999999999999999999999999977799999999999999
Q ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHH
Q 019047 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (347)
Q Consensus 173 ~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~ 252 (347)
++|+.+|++|+||||+++++.|+++|+.|||+|+.+++..+++++++.|.++++++++++|++||+|+.++..||+|+|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987656778999999999887789999999999998779999999
Q ss_pred HHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc----------CCCCCCCchhccccccCeE
Q 019047 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----------GENAGYVPSILDVQLLDEV 322 (347)
Q Consensus 253 Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~----------g~~~~~~p~~l~~~~vd~~ 322 (347)
||++|+++++|+||+|+|+||+++|+++++|+.+|+++||||||.+++.+. |...+++|+.+.+..+|++
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~v 351 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV 351 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEE
Confidence 999999778999999999999999999999999999999999999986553 2334566888888889999
Q ss_pred EEeCHHHHHHHHHHHHHhcCccccC
Q 019047 323 IKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 323 v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.|+|+|+++++++|++++||++||
T Consensus 352 v~VsD~ea~~a~r~La~~eGi~vG~ 376 (429)
T PLN03013 352 IAISSEEAIETAKQLALKEGLMVGI 376 (429)
T ss_pred EEECHHHHHHHHHHHHHHcCCEEec
Confidence 9999999999999999999999996
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=2e-54 Score=416.35 Aligned_cols=253 Identities=66% Similarity=1.092 Sum_probs=229.6
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+.++..+++|||++++.++..++++||+|+|++|||||||||+|.+++..+.+.|.+.+|.+.||++|+||||.|||++
T Consensus 6 ~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~ 85 (322)
T PLN02565 6 AKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFM 85 (322)
T ss_pred hhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHH
Confidence 34578899999999998887666789999999999999999999999999999999888887779999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||+++++.|+++|+.|||+|+.+++..+++++++.|.+++++.++++++++|+|+.++..||+|+|+||
T Consensus 86 a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei 165 (322)
T PLN02565 86 AAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEI 165 (322)
T ss_pred HHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765668899999999988768899999999988877999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEE
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIK 324 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~ 324 (347)
++|+++.+|+||+|+|+||+++|++.++|+.+++++||+|||++++.+.+ ...+..|+.+..+.+|+++.
T Consensus 166 ~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~ 245 (322)
T PLN02565 166 WKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQ 245 (322)
T ss_pred HHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEE
Confidence 99997689999999999999999999999999999999999998865533 22234555566678999999
Q ss_pred eCHHHHHHHHHHHHHhcCccccC
Q 019047 325 VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 325 Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+|+++++++|++++|+++||
T Consensus 246 V~d~ea~~a~~~l~~~~gi~vg~ 268 (322)
T PLN02565 246 VSSDEAIETAKLLALKEGLLVGI 268 (322)
T ss_pred ECHHHHHHHHHHHHHHhCcEEec
Confidence 99999999999999999999997
No 4
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=2.1e-53 Score=415.47 Aligned_cols=257 Identities=57% Similarity=0.981 Sum_probs=233.6
Q ss_pred CCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHH
Q 019047 91 GVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLG 170 (347)
Q Consensus 91 ~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~A 170 (347)
..++.+++.+.+++|||++++++.+.+|++||+|+|++|||||||||+|.+++.+++++|.+.||.+.||++|+||||+|
T Consensus 46 ~~~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~a 125 (368)
T PLN02556 46 GTKIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGIS 125 (368)
T ss_pred cchhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHH
Confidence 33345778999999999999999988889999999999999999999999999999999999999878999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHH
Q 019047 171 IAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 171 lA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti 250 (347)
+|++|+.+|++|+|+||++++..|+.+|+.|||+|+.++...+..+.++++.+++++++++++++||+|+.+++.||.|+
T Consensus 126 lA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~tt 205 (368)
T PLN02556 126 LAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETT 205 (368)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999864445688899999998888899999999999986799999
Q ss_pred HHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCC----------CCCCCchhccccccC
Q 019047 251 GPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLD 320 (347)
Q Consensus 251 ~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~----------~~~~~p~~l~~~~vd 320 (347)
|+||++|+.+.+|+||+|+|+||+++|++.++|+.+++++||||||.+++.+.++ ..++.|+.+..+.+|
T Consensus 206 g~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d 285 (368)
T PLN02556 206 GPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVME 285 (368)
T ss_pred HHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCC
Confidence 9999999867899999999999999999999999999999999999988655332 224446667778899
Q ss_pred eEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 321 EVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 321 ~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+++.|+|+|+++++++|+++|||++||
T Consensus 286 ~~v~Vsd~ea~~a~r~l~~~eGi~vg~ 312 (368)
T PLN02556 286 KVLEVSSEDAVNMARELALKEGLMVGI 312 (368)
T ss_pred eEEEECHHHHHHHHHHHHHHcCCEEec
Confidence 999999999999999999999999986
No 5
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.5e-53 Score=404.62 Aligned_cols=250 Identities=42% Similarity=0.709 Sum_probs=226.2
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
+++...+++|||+++++|.+..|++||+|+|++|||||||+|+|.+++..++++|.+.+++ .|+++|+||||+|+|++|
T Consensus 4 ~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a 82 (296)
T PRK11761 4 PTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGD-TLIEATSGNTGIALAMIA 82 (296)
T ss_pred ccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHH
Confidence 5677789999999999998888889999999999999999999999999999999887774 489999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||+++++.|+++|+.+||+|+.++...+++++.+.+.+++++. +.+|++||+|+.++..||+|+|+||+
T Consensus 83 ~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~ 161 (296)
T PRK11761 83 AIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIW 161 (296)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHHH
Confidence 99999999999999999999999999999999996445788888888888875 78899999999988778999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCCC---CCCCchhccccccCeEEEeCHHHHHH
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN---AGYVPSILDVQLLDEVIKVTNDEAVN 332 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~~---~~~~p~~l~~~~vd~~v~Vsd~ea~~ 332 (347)
+|+++.+|+||+|+|+||+++|++.+||+.+++++||||||.+++.+.|.. ....+..+....+|+++.|+|+|+++
T Consensus 162 eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~ 241 (296)
T PRK11761 162 RQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPEEYLPKIFDASRVDRVLDVSQQEAEN 241 (296)
T ss_pred HhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcCCCCCCCCcCCcccChhhCCEEEEECHHHHHH
Confidence 999767999999999999999999999999999999999999887776532 22234445567899999999999999
Q ss_pred HHHHHHHhcCccccC
Q 019047 333 MARRLALEEGLLVMC 347 (347)
Q Consensus 333 a~~~La~~eGI~~G~ 347 (347)
++++|++++||++||
T Consensus 242 a~~~l~~~~gi~ve~ 256 (296)
T PRK11761 242 TMRRLAREEGIFCGV 256 (296)
T ss_pred HHHHHHHHhCceEch
Confidence 999999999999997
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.2e-52 Score=400.64 Aligned_cols=248 Identities=57% Similarity=0.922 Sum_probs=226.1
Q ss_pred hhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHc
Q 019047 99 TQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK 178 (347)
Q Consensus 99 ~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~ 178 (347)
...+++|||++++.|++.+|++||+|+|++|||||||+|++.+++..++++|.+.+++ +|+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHc
Confidence 3568899999999999988899999999999999999999999999999999877765 489999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhh
Q 019047 179 GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDT 258 (347)
Q Consensus 179 Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql 258 (347)
|++|+||||++++..|+.+|+.+||+|+.++++++++++++++++++++.++++++++|+|+.++..||+|+++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997766789999999999886568899999999887679999999999999
Q ss_pred CCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEEeCHH
Q 019047 259 LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIKVTND 328 (347)
Q Consensus 259 ~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~Vsd~ 328 (347)
++.||+||+|+|+||+++|++.+||+.+++++||+|||.+++.+.+ ...+..|+.+.++.+|+++.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 7689999999999999999999999999999999999998865532 223456677777889999999999
Q ss_pred HHHHHHHHHHHhcCccccC
Q 019047 329 EAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 329 ea~~a~~~La~~eGI~~G~ 347 (347)
|+++++++|++.+||++||
T Consensus 241 e~~~a~~~l~~~~gi~~e~ 259 (299)
T TIGR01136 241 DAIETARRLAREEGILVGI 259 (299)
T ss_pred HHHHHHHHHHHHhCceEcc
Confidence 9999999999999999997
No 7
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=1.7e-52 Score=397.91 Aligned_cols=248 Identities=42% Similarity=0.713 Sum_probs=223.4
Q ss_pred hhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHH
Q 019047 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV 177 (347)
Q Consensus 98 v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~ 177 (347)
+...+++|||+++++|++..|++||+|+|++|||||||+|++.+++..+++.|.+.+++ .|+++|+||||.|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCC-EEEEECCChHHHHHHHHHHH
Confidence 35578999999999999888899999999999999999999999999999999887775 58999999999999999999
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHh
Q 019047 178 KGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWED 257 (347)
Q Consensus 178 ~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~q 257 (347)
+|++|+||||+++++.|+++|+.+||+|+.++.+.+++++.+.+.+++++.+ .+|++||+|+.++..||.|+++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGE-GKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC-CCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 9999999999999999999999999999999865457888899999998874 468899999988866899999999999
Q ss_pred hCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCCC---CCCCchhccccccCeEEEeCHHHHHHHH
Q 019047 258 TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN---AGYVPSILDVQLLDEVIKVTNDEAVNMA 334 (347)
Q Consensus 258 l~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~~---~~~~p~~l~~~~vd~~v~Vsd~ea~~a~ 334 (347)
+++++|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+.|.. .+..|..+....+|+++.|+|+|+++++
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~ 239 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPGIRRWPTEYLPGIFDASLVDRVLDIHQRDAENTM 239 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccCCCCCCCCcCCcccChhhCcEEEEECHHHHHHHH
Confidence 9778999999999999999999999999999999999999886665532 2344444556679999999999999999
Q ss_pred HHHHHhcCccccC
Q 019047 335 RRLALEEGLLVMC 347 (347)
Q Consensus 335 ~~La~~eGI~~G~ 347 (347)
++|++.+||++||
T Consensus 240 ~~l~~~~gi~~g~ 252 (290)
T TIGR01138 240 RELAVREGIFCGV 252 (290)
T ss_pred HHHHHHhCceEcH
Confidence 9999999999987
No 8
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=4.8e-52 Score=396.18 Aligned_cols=247 Identities=56% Similarity=0.905 Sum_probs=221.6
Q ss_pred hhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHc
Q 019047 99 TQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK 178 (347)
Q Consensus 99 ~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~ 178 (347)
..++++|||+++++ ....|++||+|+|++|||||||+|++.+++.+++++|.+.+|. +|+++|+||||+|+|++|+.+
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 4566889999999999999999999999999999999877765 489999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCC-ceecCCCCChHHHHHHHHHHHHHHHHh
Q 019047 179 GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEIWED 257 (347)
Q Consensus 179 Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~-~~~~~~~~n~~~~~~g~~ti~~Ei~~q 257 (347)
|++|+||||+++++.|+++|+.+||+|+.++++++++++++++.+++++.++ ++++++|+|+.++..||+|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876567888999999988754 458999999987777999999999999
Q ss_pred hCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEEeCH
Q 019047 258 TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIKVTN 327 (347)
Q Consensus 258 l~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~Vsd 327 (347)
+++.||+||+|+|+||+++|++.+|++.+++++||+|||.+++.+.+ ...+..++.+..+.+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 97679999999999999999999999999999999999998755432 23344566666778999999999
Q ss_pred HHHHHHHHHHHHhcCccccC
Q 019047 328 DEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 328 ~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+++++++|+++|||++||
T Consensus 240 ~e~~~a~~~l~~~~gi~~~p 259 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGI 259 (298)
T ss_pred HHHHHHHHHHHHhcCceEcc
Confidence 99999999999999999997
No 9
>PLN00011 cysteine synthase
Probab=100.00 E-value=7e-52 Score=399.26 Aligned_cols=253 Identities=59% Similarity=0.972 Sum_probs=227.5
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+.+...+++|||++++++.+..|++||+|+|++|||||||+|++.+++..++++|.+.|+.+.||++|+||||+|+|++
T Consensus 8 ~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~ 87 (323)
T PLN00011 8 KNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACI 87 (323)
T ss_pred HhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHH
Confidence 34577789999999999988776789999999999999999999999999999999998886678999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||+++++.|+++|+.+||+|+.++.+.+.++.++++.+++++.++++++++|+|+.++..||.++|+||
T Consensus 88 a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI 167 (323)
T PLN00011 88 GAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEI 167 (323)
T ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999765556778889888887667899999998888767999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEE
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIK 324 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~ 324 (347)
++|+.+++|+||+|+|+||+++|++.++|+.+++++||||||.+++.+.+ ...+..|..+....+|+++.
T Consensus 168 ~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~ 247 (323)
T PLN00011 168 WRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQ 247 (323)
T ss_pred HHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEE
Confidence 99997689999999999999999999999999999999999998865533 22234555556677999999
Q ss_pred eCHHHHHHHHHHHHHhcCccccC
Q 019047 325 VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 325 Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+|+++++++|++++||++||
T Consensus 248 V~d~e~~~a~~~l~~~~Gi~~~~ 270 (323)
T PLN00011 248 VTGEEAIETAKLLALKEGLLVGI 270 (323)
T ss_pred ECHHHHHHHHHHHHHhcCCeEcc
Confidence 99999999999999999999986
No 10
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=2.3e-51 Score=407.22 Aligned_cols=300 Identities=18% Similarity=0.186 Sum_probs=243.7
Q ss_pred CCcccccccccccccccccc------cCCCCCCCCcccchhhHHHHHHHhc---cCCCCchhhhhhhccCCCceeecccc
Q 019047 43 INGALATRRRILPIVASAKA------GAAASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVTQLIGRTPMVYLNKV 113 (347)
Q Consensus 43 ~~~~~~~r~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~TPLv~~~~l 113 (347)
+...|+++|++...|.+.++ .+.++.++.++.+.++.++++|+.. |+|+++...+++..+++|||+++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~TPL~~~~~L 86 (427)
T PRK12391 7 DEDEIPTQWYNILADLPEPLPPPLDPGTGEPVTPEDLAPIFPMELIEQEVSTERYIDIPEEVREIYRLWRPTPLIRARRL 86 (427)
T ss_pred ChhhccccceecCCCCCCCCCCCCCCCCCCCCCHHHhhhcChHHHhhccCCcccccCChHHHHHHHcccCCCCeeEchhh
Confidence 44678899999966554333 3355566677888899999999854 88888888888999999999999999
Q ss_pred ccCCC--CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC--
Q 019047 114 TEGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-- 189 (347)
Q Consensus 114 ~~~~g--~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-- 189 (347)
++.+| ++||+|+|++||+||||+|+|..+++++++.|. ..+++++|+||||+|||++|+.+|++|+||||+.
T Consensus 87 ~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~ 162 (427)
T PRK12391 87 EKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KRLTTETGAGQWGSALALACALFGLECTVFMVRVSY 162 (427)
T ss_pred HhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 98776 699999999999999999999999999999996 4555567899999999999999999999999973
Q ss_pred -CCHHHHHHHHhcCCEEEEECCCCCh----------------HHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHH
Q 019047 190 -TNLERRILLRAFGAEIILTDPEKGL----------------RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (347)
Q Consensus 190 -~~~~~~~~l~~~GA~V~~~~~~~~~----------------~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~ 252 (347)
+++.|+.+|+.|||+|+.++++.+. ..++++|.+.+.+.++.+|+.++.+++. ..||.++|+
T Consensus 163 ~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~~~-~~~~~~ig~ 241 (427)
T PRK12391 163 EQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLNHV-LLHQTVIGL 241 (427)
T ss_pred ccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCcHH-HhhHHHHHH
Confidence 5789999999999999999864321 1268888888877666666655554444 469999999
Q ss_pred HHHHhhC---CCCCEEEEecCcchHHHHHHHHHHh---cC-CCCeEEEEcCCCCccccCC--------------------
Q 019047 253 EIWEDTL---GCVDIFVAAIGTGGTITGTGRFLKM---MN-KEIKVVGVEPAERSVISGE-------------------- 305 (347)
Q Consensus 253 Ei~~ql~---~~~D~vv~pvG~Gg~~~Gi~~~~k~---~~-~~~~vigVep~~~~~~~g~-------------------- 305 (347)
||++|++ ..||+||+|+|+|||++|++.+|.+ .+ +++|||+|||.+|+.++++
T Consensus 242 Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~ 321 (427)
T PRK12391 242 EAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYT 321 (427)
T ss_pred HHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEe
Confidence 9999996 3799999999999999999986633 24 7899999999998665431
Q ss_pred -CCCCCchhc-----------------cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 -NAGYVPSIL-----------------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 -~~~~~p~~l-----------------~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..+++|..+ ....+++++.|+|+|+++|++.|+++|||++||
T Consensus 322 lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~p 381 (427)
T PRK12391 322 LGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAP 381 (427)
T ss_pred cCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeech
Confidence 012223222 133456889999999999999999999999987
No 11
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=5.3e-51 Score=394.33 Aligned_cols=252 Identities=42% Similarity=0.674 Sum_probs=217.7
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
++.+...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.++++.|.+.++. +|+++|+||||+|+|++
T Consensus 4 ~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~ 82 (330)
T PRK10717 4 FEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGG-TIVEGTAGNTGIGLALV 82 (330)
T ss_pred hhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHH
Confidence 45678889999999999999988999999999999999999999999999999999877774 48999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCC-CC-----hHHHHHHHHHHHHcC-CCceecCCCCChHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE-KG-----LRGALDKAEEIVLNT-PNAYMFQQFDNMANLKIHF 247 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~-~~-----~~~a~~~a~~~a~~~-~~~~~~~~~~n~~~~~~g~ 247 (347)
|+.+|++|+||||+.+++.|+++|+.+||+|+.++++ ++ .+.+.+.+.+++++. .+++|+++|+|+.+++.||
T Consensus 83 a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 162 (330)
T PRK10717 83 AAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHY 162 (330)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHH
Confidence 9999999999999999999999999999999999864 11 222344444444443 2788999999998877799
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc----C------------CCCCCCc
Q 019047 248 DSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----G------------ENAGYVP 311 (347)
Q Consensus 248 ~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~----g------------~~~~~~p 311 (347)
.|+++||++|+++.+|+||+|+|+||+++|++.+||+.+++++||+|||.+++... | ...+..+
T Consensus 163 ~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~ 242 (330)
T PRK10717 163 ETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRIT 242 (330)
T ss_pred HhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCC
Confidence 99999999999778999999999999999999999999999999999998874331 1 1123345
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+....+|+++.|+|+|+++++++|+++|||++||
T Consensus 243 ~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vep 278 (330)
T PRK10717 243 ANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGG 278 (330)
T ss_pred cccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEee
Confidence 555556789999999999999999999999999997
No 12
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-52 Score=395.21 Aligned_cols=246 Identities=25% Similarity=0.367 Sum_probs=224.1
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+++...+.+|||++++.|++.+|++||+|+|++||+||||.|||++.+..+.+.+.. ...||++|+||||+++|++
T Consensus 16 ~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGvA~a 92 (347)
T COG1171 16 AARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGVAYA 92 (347)
T ss_pred HHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHHHHH
Confidence 3667888889999999999999999999999999999999999999999987644221 3569999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+++|++++||||.+++..|++.++.|||+|++++. +++++...|.++++++ |+.|+++|++++.+ .||.|+++||
T Consensus 93 a~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGTi~lEi 168 (347)
T COG1171 93 AKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGTIALEI 168 (347)
T ss_pred HHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccHHHHHH
Confidence 999999999999999999999999999999999986 4699999999999997 89999999999887 6999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCc-----cccC------------------CCCCCCc
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS-----VISG------------------ENAGYVP 311 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~-----~~~g------------------~~~~~~p 311 (347)
.+|+...||+||||+|+||+++|++.++|...|+++||||||+.++ +..| ..++..+
T Consensus 169 leq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~t 248 (347)
T COG1171 169 LEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLT 248 (347)
T ss_pred HHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHH
Confidence 9999655799999999999999999999999999999999999873 3333 2346778
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|.+.++++|++++|+|+|+.++++.|++.++|+++|
T Consensus 249 f~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~Ep 284 (347)
T COG1171 249 FEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEP 284 (347)
T ss_pred HHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccc
Confidence 889999999999999999999999999999999987
No 13
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=392.49 Aligned_cols=256 Identities=60% Similarity=0.965 Sum_probs=242.2
Q ss_pred CchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHH
Q 019047 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGI 171 (347)
Q Consensus 92 ~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~Al 171 (347)
....+.+.+.+|.|||+.++++++++.++||+|+|.+||+||.|||.++.|+..|+.+|.+.||+++|+++|+||+|.+|
T Consensus 40 ~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigL 119 (362)
T KOG1252|consen 40 ILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGL 119 (362)
T ss_pred hhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHH
Confidence 44567788999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHH---HHHHHHHHHHcCCCceecCCCCChHHHHHHHH
Q 019047 172 AFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG---ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFD 248 (347)
Q Consensus 172 A~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~---a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ 248 (347)
|++|+..|++|+++||+.++.+|+..|++|||+|+.++....+++ ++..|.++..+.||.+.++||.|+.|...||.
T Consensus 120 A~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ 199 (362)
T KOG1252|consen 120 AYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYE 199 (362)
T ss_pred HHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccc
Confidence 999999999999999999999999999999999999997666666 99999999999999999999999999988999
Q ss_pred HHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC------------CCCCCCchhccc
Q 019047 249 STGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG------------ENAGYVPSILDV 316 (347)
Q Consensus 249 ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g------------~~~~~~p~~l~~ 316 (347)
++|.||++|+.+++|.||.++|+|||++|+++++|+.+++++|++|||..+.+..+ .+.+++|..++.
T Consensus 200 ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~ 279 (362)
T KOG1252|consen 200 TTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDT 279 (362)
T ss_pred cccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccch
Confidence 99999999999999999999999999999999999999999999999998866554 445789999999
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 317 QLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 317 ~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..+|+.+.+.++|++.++++|+.+|||++|.
T Consensus 280 ~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~ 310 (362)
T KOG1252|consen 280 KLVDEVLKVSSDEAIEMARRLALEEGLLVGI 310 (362)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCeeecc
Confidence 9999999999999999999999999999984
No 14
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=6.8e-51 Score=403.24 Aligned_cols=295 Identities=18% Similarity=0.161 Sum_probs=233.7
Q ss_pred cccccccccccccccc------cCCCCCCCCcccchhhHHHHHHHhc---cCCCCchhhhhhhcc-CCCceeeccccccC
Q 019047 47 LATRRRILPIVASAKA------GAAASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVTQLI-GRTPMVYLNKVTEG 116 (347)
Q Consensus 47 ~~~r~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~-~~TPLv~~~~l~~~ 116 (347)
|+++|++...+.+.++ .+.++....++..+++.++++|+.. |+++++...+.+..+ ++|||+++++|++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~v~~~~~l~g~pTPL~r~~~L~~~ 80 (419)
T TIGR01415 1 IPKHWYNILPDLPEPLPPPLDPEGEEPIAIEKLKRIFPEKLLEQEVSGERWIKIPGEVLKRYAQIGRPTPLIRAKGLEEL 80 (419)
T ss_pred CCCcceecCCCCCCCCCCCCCCCCCCcCCHHHHhhhCcHHHHhccccHhhHHhhHHHHHHHHHhcCCCCCeEEccchhhh
Confidence 4678999866654433 3344445566778899999998855 777776566666667 58999999999997
Q ss_pred CC--CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC---CC
Q 019047 117 CV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TN 191 (347)
Q Consensus 117 ~g--~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~---~~ 191 (347)
+| ++||+|+|++|||||||+|+|.+++.+++++|. .++++++|+||||+|||++|+.+|++|+||||+. ++
T Consensus 81 lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k 156 (419)
T TIGR01415 81 LGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQK 156 (419)
T ss_pred hCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccC
Confidence 76 699999999999999999999999999999996 4555678999999999999999999999999984 47
Q ss_pred HHHHHHHHhcCCEEEEECCCCChH----------------HHHHHHHHHHHcCCCc-eecCCCCChHHHHHHHHHHHHHH
Q 019047 192 LERRILLRAFGAEIILTDPEKGLR----------------GALDKAEEIVLNTPNA-YMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 192 ~~~~~~l~~~GA~V~~~~~~~~~~----------------~a~~~a~~~a~~~~~~-~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
+.|+.+|+.|||+|+.++++++.. .++++|.+.++++++. |+..++.| .. ..||+++|+||
T Consensus 157 ~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n-~~-~~h~~~ig~Ei 234 (419)
T TIGR01415 157 PYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLN-HV-LLHQTVIGLEA 234 (419)
T ss_pred HHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCc-HH-HHHHHHHHHHH
Confidence 789999999999999998754211 1477888888765444 55555444 34 36999999999
Q ss_pred HHhhCC---CCCEEEEecCcchHHHHHHHHHHhc----CCCCeEEEEcCCCCccccCCC---------------------
Q 019047 255 WEDTLG---CVDIFVAAIGTGGTITGTGRFLKMM----NKEIKVVGVEPAERSVISGEN--------------------- 306 (347)
Q Consensus 255 ~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~----~~~~~vigVep~~~~~~~g~~--------------------- 306 (347)
++|++. .||+||+|+|+|||++|++.+|.+. .++++||+|||.+|+.++++.
T Consensus 235 ~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG 314 (419)
T TIGR01415 235 KKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLG 314 (419)
T ss_pred HHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecC
Confidence 999964 5999999999999999999887432 258999999999986554321
Q ss_pred CCCCchhc-----------------cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 AGYVPSIL-----------------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ~~~~p~~l-----------------~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+++|... ..+.+++++.|+|+|+++|+++|+++|||++||
T Consensus 315 ~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~ep 372 (419)
T TIGR01415 315 HDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAP 372 (419)
T ss_pred CCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCcccc
Confidence 12223221 234556789999999999999999999999997
No 15
>PLN02970 serine racemase
Probab=100.00 E-value=6.3e-51 Score=393.41 Aligned_cols=254 Identities=18% Similarity=0.251 Sum_probs=221.2
Q ss_pred chhhHHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCC
Q 019047 75 ATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154 (347)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~ 154 (347)
.+++.++...+ +++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++++++.
T Consensus 8 ~~~~~~i~~a~----------~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~--- 74 (328)
T PLN02970 8 AADLSSIREAR----------KRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA--- 74 (328)
T ss_pred CcCHHHHHHHH----------HHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc---
Confidence 33555665543 55677889999999999998888999999999999999999999999999886554
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceec
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMF 234 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~ 234 (347)
.+.||++|+||||.|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.++. +++++.+.+.+++++ ++++|+
T Consensus 75 -~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~-~g~~~~ 150 (328)
T PLN02970 75 -EKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQE-TGAVLI 150 (328)
T ss_pred -CCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHh-cCCEEe
Confidence 3569999999999999999999999999999999999999999999999999986 467888889888887 489999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC----
Q 019047 235 QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE---- 305 (347)
Q Consensus 235 ~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~---- 305 (347)
++|+|+.++ .||+|+|+||++|+. .||+||+|+|+||+++|++.+||+.+++++||+|||.+++.+ .|.
T Consensus 151 ~~~~n~~~~-~g~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~ 228 (328)
T PLN02970 151 HPYNDGRVI-SGQGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITL 228 (328)
T ss_pred CCCCCcchh-hehHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeC
Confidence 999999887 599999999999995 699999999999999999999999999999999999987533 221
Q ss_pred -C-----------CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 -N-----------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 -~-----------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
. .+..++...++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 229 ~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~ 282 (328)
T PLN02970 229 PVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEP 282 (328)
T ss_pred CCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeH
Confidence 0 11122445567899999999999999999999999999997
No 16
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=3.7e-50 Score=381.91 Aligned_cols=244 Identities=52% Similarity=0.863 Sum_probs=218.9
Q ss_pred CCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcE
Q 019047 103 GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKL 182 (347)
Q Consensus 103 ~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~ 182 (347)
++|||+++++|++..|++||+|+|++|||||||+|++.+.+.+++++|..+++. .|+++|+||||+|+|++|+.+|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~-~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGT-TIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHcCCeE
Confidence 589999999999988899999999999999999999999999999999866554 4899999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHhcCCEEEEECCCC--ChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC
Q 019047 183 IVTMPASTNLERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260 (347)
Q Consensus 183 ~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~--~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~ 260 (347)
+||||.++++.|+++|+.+||+|+.++.++ +.+++++.+.+++++.++++|+++|+|+.+++.|++|+++||.+|+++
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998754 457888999999888668999999999999864455999999999976
Q ss_pred CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEEeCHHHH
Q 019047 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIKVTNDEA 330 (347)
Q Consensus 261 ~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~Vsd~ea 330 (347)
.||+||+|+|+||+++|++.+|++..++++||+|||.+++.+.+ ...+..++.+.++.+|+++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 89999999999999999999999999999999999998765522 22234456666678999999999999
Q ss_pred HHHHHHHHHhcCccccC
Q 019047 331 VNMARRLALEEGLLVMC 347 (347)
Q Consensus 331 ~~a~~~La~~eGI~~G~ 347 (347)
+++++.|++++||++||
T Consensus 240 ~~a~~~l~~~~gi~~ep 256 (291)
T cd01561 240 FAMARRLAREEGLLVGG 256 (291)
T ss_pred HHHHHHHHHHhCeeEcc
Confidence 99999999999999997
No 17
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=3.1e-50 Score=396.27 Aligned_cols=251 Identities=35% Similarity=0.565 Sum_probs=215.2
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
..+...+++|||+++++|....|++||+|+|++|||||||||+|.+++..|.+.|.++++. +|+++|+||||.|+|++|
T Consensus 45 ~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~~a 123 (423)
T PLN02356 45 NGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLATVA 123 (423)
T ss_pred hhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHHHHH
Confidence 4466778999999999999888899999999999999999999999999999999877764 478899999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCC-----CCh-HHHH---HHHHHHHHc-------------------
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE-----KGL-RGAL---DKAEEIVLN------------------- 227 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~-----~~~-~~a~---~~a~~~a~~------------------- 227 (347)
+.+|++|+||||+++++.|+++|+.|||+|+.+++. .++ ..+. +++.+++++
T Consensus 124 a~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~ 203 (423)
T PLN02356 124 PAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCI 203 (423)
T ss_pred HHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 999999999999999999999999999999999641 111 1122 334444443
Q ss_pred -------------CCCceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEE
Q 019047 228 -------------TPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGV 294 (347)
Q Consensus 228 -------------~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigV 294 (347)
.++.+|++||+|+.++..|+..+|+||++|+++++|+||+|+|+||+++|+++++|+.+|+++||+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigV 283 (423)
T PLN02356 204 SEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLI 283 (423)
T ss_pred ccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 1478899999999997677666699999999778999999999999999999999999999999999
Q ss_pred cCCCCccc---------------------------cCCCCCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 295 EPAERSVI---------------------------SGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 295 ep~~~~~~---------------------------~g~~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
||.++... .|...+..|+.+....+|+++.|+|+|+++++++|++++||++||
T Consensus 284 ep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~ 363 (423)
T PLN02356 284 DPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGS 363 (423)
T ss_pred ecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeE
Confidence 99876422 122234566677778899999999999999999999999999997
No 18
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-50 Score=400.54 Aligned_cols=245 Identities=22% Similarity=0.336 Sum_probs=218.0
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+.+. .+.||++|+||||+++|+
T Consensus 10 a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~avA~ 85 (403)
T PRK08526 10 AKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQGVAI 85 (403)
T ss_pred HHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHHHHH
Confidence 4467888899999999999999889999999999999999999999999998886654 356899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++++..|++.++.|||+|+.++. ++++++.+|.+++++. +++|+++|+|+.++ .||+|+|+|
T Consensus 86 aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~G~gtia~E 161 (403)
T PRK08526 86 SAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEVM-AGQGTIALE 161 (403)
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-hhhHHHHHH
Confidence 9999999999999999999999999999999999985 5789999999999886 78999999999886 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC-----------------CCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE-----------------NAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~-----------------~~~~~p 311 (347)
|++|+ +.+|+||+|+|+||+++|++.++|+.+|+++||||||++++.+ .|. .++...
T Consensus 162 I~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~ 240 (403)
T PRK08526 162 MLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPIN 240 (403)
T ss_pred HHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHH
Confidence 99999 4799999999999999999999999999999999999988543 221 011222
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|++++|+|+|+.+|++.|++++||+++|
T Consensus 241 ~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~ 276 (403)
T PRK08526 241 LAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEG 276 (403)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeH
Confidence 333457899999999999999999999999999986
No 19
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-50 Score=390.11 Aligned_cols=245 Identities=23% Similarity=0.287 Sum_probs=218.3
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++++.|. .+.||++|+||||+|+|+
T Consensus 9 a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~alA~ 84 (322)
T PRK07476 9 ARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRALAY 84 (322)
T ss_pred HHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHHHHH
Confidence 4577888999999999999999888999999999999999999999999999999886 345899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||+++++.|+.+|+.|||+|+.++. +++++++.+.+++++. +++|+++|+|+.++ .||+|+++|
T Consensus 85 ~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t~~~E 160 (322)
T PRK07476 85 AARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRII-AGQGTIGLE 160 (322)
T ss_pred HHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCccee-echhHHHHH
Confidence 9999999999999999999999999999999999985 3678889999988876 77999999999887 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC----------------C---CCC
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE----------------N---AGY 309 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~----------------~---~~~ 309 (347)
|++|+. .+|+||+|+|+||+++|++.+||..+++++||||||.+++.+ .|. . ++.
T Consensus 161 i~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~ 239 (322)
T PRK07476 161 ILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNR 239 (322)
T ss_pred HHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcH
Confidence 999984 689999999999999999999999999999999999876422 110 0 112
Q ss_pred CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++.+.++.+|+++.|+|+|+.+++++|++++||++||
T Consensus 240 ~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~ 277 (322)
T PRK07476 240 YTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEG 277 (322)
T ss_pred HHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeC
Confidence 23445567899999999999999999999999999986
No 20
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=3.2e-50 Score=398.82 Aligned_cols=245 Identities=28% Similarity=0.413 Sum_probs=220.1
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++.++.+++. .+.||++|+||||+++|+
T Consensus 12 a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 87 (404)
T PRK08198 12 ARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVAY 87 (404)
T ss_pred HHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHHH
Confidence 4467888999999999999999889999999999999999999999999999886554 356999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++++..|+++++.|||+|+.++. +++++++.+.+++++. +++|+++|+|+.++ .||+|+|+|
T Consensus 88 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~t~a~E 163 (404)
T PRK08198 88 AASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDVI-AGQGTIGLE 163 (404)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999975 5789999999999886 79999999999887 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC-----------------CCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE-----------------NAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~-----------------~~~~~p 311 (347)
|++|+ +++|+||+|+|+||+++|++.+||+.+|+++||||||.+++.+ .|. .++..+
T Consensus 164 I~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~ 242 (404)
T PRK08198 164 ILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLT 242 (404)
T ss_pred HHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHH
Confidence 99998 4799999999999999999999999999999999999988644 121 123334
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|+++.|+|+|+.+|+++|++++|+++||
T Consensus 243 ~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~ 278 (404)
T PRK08198 243 FEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEG 278 (404)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEeh
Confidence 555678899999999999999999999999999987
No 21
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=9.8e-50 Score=392.42 Aligned_cols=244 Identities=21% Similarity=0.264 Sum_probs=212.1
Q ss_pred ccCCCceeeccccccCCC--------CeEEEEeCCCCC-CCchhHHHHHHHHHH-----HHHcCCCCCCC----------
Q 019047 101 LIGRTPMVYLNKVTEGCV--------GNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGK---------- 156 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g--------~~Iy~K~E~~~p-tGSfK~Rga~~~~~~-----a~~~G~~~~g~---------- 156 (347)
++++|||+++++|++.+| ++||+|+|++|| |||||||++.+++.. +++.|.++|+.
T Consensus 49 ~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~ 128 (404)
T cd06447 49 GIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKF 128 (404)
T ss_pred CccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhh
Confidence 399999999999988654 799999999999 999999999999864 78889888875
Q ss_pred ------eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCC
Q 019047 157 ------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN 230 (347)
Q Consensus 157 ------~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~ 230 (347)
+.||++|+||||.|||++|+.+|++|+||||+++++.|++.|+.|||+|+.+++ +++++++.+.++++++++
T Consensus 129 ~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~ 206 (404)
T cd06447 129 RKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPM 206 (404)
T ss_pred hhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCC
Confidence 479999999999999999999999999999999999999999999999999985 568899999999988767
Q ss_pred ceecCCCCChHHHHHHHHHHHHHHHHhhCC---C-----CCEEEEecCcchHHHHHHHHHHhc-CCCCeEEEEcCCCCcc
Q 019047 231 AYMFQQFDNMANLKIHFDSTGPEIWEDTLG---C-----VDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEPAERSV 301 (347)
Q Consensus 231 ~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~---~-----~D~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVep~~~~~ 301 (347)
.+|+++++++.. +.||+|+|+||++|+++ + ||+||+|+|+||+++|++.+||+. .++++||+|||+.++.
T Consensus 207 ~~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~ 285 (404)
T cd06447 207 CYFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPC 285 (404)
T ss_pred eEeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChH
Confidence 889999765555 47999999999999952 3 558999999999999999999997 7889999999988643
Q ss_pred c-----cCCC-----------------------CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 302 I-----SGEN-----------------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 302 ~-----~g~~-----------------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+ .|.. ++..++.+.++.+|+++.|+|+|+++++++|++++||++||
T Consensus 286 ~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vep 359 (404)
T cd06447 286 MLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEP 359 (404)
T ss_pred HHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeH
Confidence 2 1210 12233445568899999999999999999999999999987
No 22
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=5.4e-50 Score=397.14 Aligned_cols=245 Identities=22% Similarity=0.347 Sum_probs=219.6
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+.+. ...|+++|+||||.|+|+
T Consensus 15 a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~A~ 90 (406)
T PRK06382 15 AKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGVAY 90 (406)
T ss_pred HHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHHHH
Confidence 4567888899999999999999889999999999999999999999999988877654 245999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++.+..|++.++.|||+|+.+++ +++++.+.|.+++++. +++|+++|+|+.++ .||+|+|+|
T Consensus 91 aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i-~g~~t~~~E 166 (406)
T PRK06382 91 AASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVI-SGQGTIGLE 166 (406)
T ss_pred HHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999985 4688999999999886 78999999999887 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cC--------------C---CCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SG--------------E---NAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g--------------~---~~~~~p 311 (347)
|++|+ +.+|+||+|+|+||+++|++.++|..+++++||||||.+++.+ .| . .++..+
T Consensus 167 i~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~ 245 (406)
T PRK06382 167 IMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLT 245 (406)
T ss_pred HHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHH
Confidence 99998 4799999999999999999999999999999999999988543 22 0 122334
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|+++.|+|+|+.+|++.|++++||++||
T Consensus 246 ~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~ep 281 (406)
T PRK06382 246 FDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEP 281 (406)
T ss_pred HHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceech
Confidence 556678899999999999999999999999999997
No 23
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=6.2e-50 Score=404.70 Aligned_cols=244 Identities=25% Similarity=0.345 Sum_probs=218.8
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
.++...+++|||+++++|++.+|++||+|+|++|||||||+|||++.+..+.+... .+.||++|+||||.+||++|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA 104 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAA 104 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999988764332 24599999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||.+++..|+..++.|||+|+.+++ +++++.++|.++++++ +++|+++|+|+.++ .||+|+|+||+
T Consensus 105 ~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~vi-aGqgTig~EI~ 180 (521)
T PRK12483 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDVI-AGQGTVAMEIL 180 (521)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999985 5799999999999886 78999999999997 59999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCCCchh
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGYVPSI 313 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~~p~~ 313 (347)
+|+++.+|+||+|+|+||+++|++.++|..+|+++||||||++++.+. |. .++..++.
T Consensus 181 eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~ 260 (521)
T PRK12483 181 RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFE 260 (521)
T ss_pred HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHH
Confidence 999667999999999999999999999999999999999999875432 20 11233455
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.++.+|++++|+|+|+.+|++.|++++|++++|
T Consensus 261 ~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEp 294 (521)
T PRK12483 261 LCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEP 294 (521)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeH
Confidence 6678899999999999999999999999999987
No 24
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=5.4e-50 Score=387.30 Aligned_cols=244 Identities=26% Similarity=0.401 Sum_probs=214.2
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
++++...+++|||+++++|++..|++||+|+|++|||||||||++.+++.++.+... ...|+++|+||||.|+|++
T Consensus 18 ~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~alA~~ 93 (333)
T PRK08638 18 KQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQGVALS 93 (333)
T ss_pred HHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHHHHHH
Confidence 466778899999999999998888999999999999999999999999998775332 2469999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||++.++.|+.+++.+||+|+.+++ +++++++.+.+++++. +.+|+++|+|+.++ .||+|+++||
T Consensus 94 aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~-~g~~t~a~Ei 169 (333)
T PRK08638 94 CALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKVI-AGQGTIGLEI 169 (333)
T ss_pred HHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcchh-ccccHHHHHH
Confidence 999999999999999999999999999999999975 4688999999999886 78999999999887 6999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcc-----ccCC-----CC-----C---CCch----
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSV-----ISGE-----NA-----G---YVPS---- 312 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~-----~~g~-----~~-----~---~~p~---- 312 (347)
++|+ +++|+||+|+|+||+++|++.+||+.+++++||||||++++. ..|. .. + ..|.
T Consensus 170 ~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~~~~~ 248 (333)
T PRK08638 170 LEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNLTY 248 (333)
T ss_pred Hhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCccHHHH
Confidence 9999 579999999999999999999999999999999999998742 2221 00 0 1222
Q ss_pred hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 ~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.++.+|+++.|+|+|+.+++++|++++|++++|
T Consensus 249 ~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~ 283 (333)
T PRK08638 249 EIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEG 283 (333)
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeech
Confidence 22357899999999999999999999999999886
No 25
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=5.1e-50 Score=390.27 Aligned_cols=257 Identities=22% Similarity=0.273 Sum_probs=221.3
Q ss_pred HHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEE
Q 019047 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv 160 (347)
++.+|++++|+.+...++++++|+|||+++++|++.+|++||+|+|++|||||||||++.+++.+++++|. ++||
T Consensus 5 ~~~ry~~~lp~~~~~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV 79 (351)
T PRK06352 5 LLEKYKEYLPVTDKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVI 79 (351)
T ss_pred hHHHHHHhCCCCCCcCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEE
Confidence 45569999999876667899999999999999998888899999999999999999999999999999985 5699
Q ss_pred EeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCC
Q 019047 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDN 239 (347)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n 239 (347)
++|+||||+|+|++|+.+|++|+||||++ .+..|+.+|+.|||+|+.+++ +++++++.+.+++++. ++++.+ +.|
T Consensus 80 ~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n 155 (351)
T PRK06352 80 CASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVN 155 (351)
T ss_pred EECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCC
Confidence 99999999999999999999999999997 589999999999999999986 4678889999988874 566666 458
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCC-----CeEEEEcCCCCccc-cCCC---C---
Q 019047 240 MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE-----IKVVGVEPAERSVI-SGEN---A--- 307 (347)
Q Consensus 240 ~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~-----~~vigVep~~~~~~-~g~~---~--- 307 (347)
+.++ .||+|+++||++|++..||+||+|+|+||+++|++.+||+++++ ++||+|||++++.+ .|.. +
T Consensus 156 ~~~~-~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~i 234 (351)
T PRK06352 156 PYRL-EGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETI 234 (351)
T ss_pred ccce-eeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcc
Confidence 8887 59999999999999778999999999999999999999998766 89999999988633 2211 0
Q ss_pred ------C-CCchhccccccC----eEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 308 ------G-YVPSILDVQLLD----EVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 308 ------~-~~p~~l~~~~vd----~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+ ...+.+..+.+| .++.|+|+|+++|+++|+++|||++||
T Consensus 235 a~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vep 285 (351)
T PRK06352 235 ATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEP 285 (351)
T ss_pred eeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEch
Confidence 0 011222223344 489999999999999999999999997
No 26
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1.4e-49 Score=382.38 Aligned_cols=245 Identities=22% Similarity=0.292 Sum_probs=216.6
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... ...|+++|+||||.|+|+
T Consensus 9 a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 84 (317)
T TIGR02991 9 AAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRALAY 84 (317)
T ss_pred HHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHHHH
Confidence 4577888999999999999998888899999999999999999999999998764322 245899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||+++++.|+++|+.|||+|+.++. +++++.+.+.+++++. +++|+++|+|+.++ .||+|+++|
T Consensus 85 ~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t~a~E 160 (317)
T TIGR02991 85 AAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIV-AGQGTLGLE 160 (317)
T ss_pred HHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-hhHHHHHHH
Confidence 9999999999999999999999999999999999996 4678888999998876 78999999999887 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC------------------C-CCC
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE------------------N-AGY 309 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~------------------~-~~~ 309 (347)
|++|+ +.+|+||+|+|+||+++|++.+||+.+++++||||||++++.+ .|. . ++.
T Consensus 161 i~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~ 239 (317)
T TIGR02991 161 VVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNR 239 (317)
T ss_pred HHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCH
Confidence 99998 4689999999999999999999999999999999999866433 221 0 122
Q ss_pred CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++.+..+.+|+++.|+|+|+++++++|++++|++++|
T Consensus 240 ~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~ 277 (317)
T TIGR02991 240 VTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEG 277 (317)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcc
Confidence 34556678899999999999999999999999999987
No 27
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=3.9e-50 Score=398.14 Aligned_cols=246 Identities=24% Similarity=0.316 Sum_probs=215.2
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+... .+.||++|+||||.++|+
T Consensus 6 a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a~A~ 81 (409)
T TIGR02079 6 ARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQGFAY 81 (409)
T ss_pred HHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHHH
Confidence 4577889999999999999999889999999999999999999999999987543322 245999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEE---EEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEI---ILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V---~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti 250 (347)
+|+.+|++|+||||++++..|+..++.|||+| +.++ .++++++++|.+++++. +++|+++|+|+.++ .||+|+
T Consensus 82 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~ti 157 (409)
T TIGR02079 82 ACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRII-EGQGTV 157 (409)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhHh-hhhHHH
Confidence 99999999999999999999999999999974 3444 35789999999999886 78999999999887 599999
Q ss_pred HHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CCC-----------------CC
Q 019047 251 GPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GEN-----------------AG 308 (347)
Q Consensus 251 ~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~~-----------------~~ 308 (347)
|+||++|+.+.||+||+|+|+||+++|++.++|+.+|+++||||||.+++.+. |.. ++
T Consensus 158 ~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g 237 (409)
T TIGR02079 158 AAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVG 237 (409)
T ss_pred HHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCc
Confidence 99999999767999999999999999999999999999999999999875442 210 11
Q ss_pred CCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 309 YVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 309 ~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..++.+....+|++++|+|+|+.+|+++|++++||++||
T Consensus 238 ~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~ 276 (409)
T TIGR02079 238 DLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEP 276 (409)
T ss_pred HHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecc
Confidence 123334567899999999999999999999999999997
No 28
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=1.1e-49 Score=383.72 Aligned_cols=256 Identities=20% Similarity=0.286 Sum_probs=221.4
Q ss_pred ccchhhHHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCC
Q 019047 73 LYATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152 (347)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~ 152 (347)
+..++..++.+. ++++...+++|||+++++|++..|++||+|+|++|||||||+|++.+++.++.+.+.
T Consensus 3 ~~~~~~~~i~~a----------~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~- 71 (321)
T PRK07048 3 LLLPTYDDVAAA----------AARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR- 71 (321)
T ss_pred CccCCHHHHHHH----------HHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc-
Confidence 344455566664 356778889999999999998888999999999999999999999999998885432
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCce
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAY 232 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~ 232 (347)
...|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.|||+|+.+++. ++++.+.+.+++++. +++
T Consensus 72 ---~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~--~~~~~~~a~~l~~~~-g~~ 145 (321)
T PRK07048 72 ---RAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY--TEDREEIGRRLAEER-GLT 145 (321)
T ss_pred ---CCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCE
Confidence 24589999999999999999999999999999999999999999999999999853 567788888888886 789
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCc-----cccCCC-
Q 019047 233 MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS-----VISGEN- 306 (347)
Q Consensus 233 ~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~-----~~~g~~- 306 (347)
|+++|+|+.++ .||+|+++||++|++ +||+||+|+|+||+++|++.++|+.+++++||||||++++ +..|..
T Consensus 146 ~~~~~~~~~~~-~g~~t~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~ 223 (321)
T PRK07048 146 LIPPYDHPHVI-AGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIV 223 (321)
T ss_pred EECCCCCcchh-hccchHHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcc
Confidence 99999999886 699999999999994 7999999999999999999999999999999999999874 333311
Q ss_pred ----C------------CCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 ----A------------GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ----~------------~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+ +...+++.++.+|+++.|+|+|+++++++|++++||++||
T Consensus 224 ~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~ep 280 (321)
T PRK07048 224 HIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEP 280 (321)
T ss_pred cCCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceecc
Confidence 0 1122344567899999999999999999999999999997
No 29
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=9.9e-50 Score=396.60 Aligned_cols=259 Identities=21% Similarity=0.196 Sum_probs=225.3
Q ss_pred HHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCe
Q 019047 79 REIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157 (347)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~ 157 (347)
..+|+ |+.++|+.+.. .+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|++.|. .
T Consensus 66 ~~~wr-y~~~lp~~~~~-~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~ 138 (421)
T PRK07591 66 KSIWR-YRDLLPVPADN-PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----T 138 (421)
T ss_pred cchhc-chhhCccccCC-CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----C
Confidence 46777 89999986533 6999999999999999999888 499999999999999999999999999999986 4
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
.|+++|+||||+|+|++|+.+|++|+||||++++..|+.+|+.|||+|+.++++ ++++.+.+.+++++.+++++++++
T Consensus 139 ~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~--~d~a~~~a~~~~~~~~~~~~~n~~ 216 (421)
T PRK07591 139 TVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGN--YDDVNRLCSELANEHEGWGFVNIN 216 (421)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEEecCC
Confidence 689999999999999999999999999999999999999999999999999964 688999999999887678889988
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCC-CCEEEEecCcchHHHHHHHHHHhc-------CCCCeEEEEcCCCCcccc-----C
Q 019047 238 DNMANLKIHFDSTGPEIWEDTLGC-VDIFVAAIGTGGTITGTGRFLKMM-------NKEIKVVGVEPAERSVIS-----G 304 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei~~ql~~~-~D~vv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigVep~~~~~~~-----g 304 (347)
.|++.+ .|++|+++||++|++++ ||+||+|+|+||+++|++.+|+++ .+++|||+|||++++.+. |
T Consensus 217 ~~p~~i-eG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g 295 (421)
T PRK07591 217 LRPYYA-EGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEG 295 (421)
T ss_pred CCcccc-cchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcC
Confidence 888887 59999999999999754 999999999999999999999997 578999999999864332 2
Q ss_pred CC------CCCC--------c------hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 EN------AGYV--------P------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ~~------~~~~--------p------~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. +..+ | +.+.++..+.++.|+|+|+++|++.|++.|||+++|
T Consensus 296 ~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~ep 358 (421)
T PRK07591 296 RDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTET 358 (421)
T ss_pred CCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecc
Confidence 10 1110 1 122345566899999999999999999999999987
No 30
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=3.6e-49 Score=396.52 Aligned_cols=251 Identities=44% Similarity=0.715 Sum_probs=220.3
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
+.+...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++.++.++|.+.+|+ .|+++|+||||+|+|++|
T Consensus 3 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~~ssGN~g~alA~~a 81 (454)
T TIGR01137 3 DNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGD-TIIEPTSGNTGIGLALVA 81 (454)
T ss_pred cchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHHH
Confidence 3466778999999999999988889999999999999999999999999999999988874 589999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChH---HHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR---GALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~---~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~ 252 (347)
+.+|++|+||||+++++.|+.+++.+||+|+.+++...++ ..++.+.+++++.++.+|+++|+|+.++..||.|+|+
T Consensus 82 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 161 (454)
T TIGR01137 82 AIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGP 161 (454)
T ss_pred HHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHH
Confidence 9999999999999999999999999999999998642222 3366777787775577888999999987679999999
Q ss_pred HHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC---------------CCCCCCchhcccc
Q 019047 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG---------------ENAGYVPSILDVQ 317 (347)
Q Consensus 253 Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g---------------~~~~~~p~~l~~~ 317 (347)
||++|+++.||+||+|+|+||+++|++.++|+..++++||||||.++....+ ...+..|+.+...
T Consensus 162 Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (454)
T TIGR01137 162 EILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDRK 241 (454)
T ss_pred HHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCch
Confidence 9999997789999999999999999999999999999999999988754322 1112345555667
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 318 LLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 318 ~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+|+++.|+|+|++++++.|+++|||++||
T Consensus 242 ~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ 271 (454)
T TIGR01137 242 VVDEWIKTDDKESFKMARRLIKEEGLLVGG 271 (454)
T ss_pred hCCeEEEECHHHHHHHHHHHHHHhCccCcH
Confidence 899999999999999999999999999997
No 31
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.6e-49 Score=381.65 Aligned_cols=240 Identities=25% Similarity=0.244 Sum_probs=210.0
Q ss_pred CCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEE
Q 019047 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLI 183 (347)
Q Consensus 104 ~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~ 183 (347)
+|||+++++|++.+|++||+|+|++|||||||||++.+++.+++++|. .++ +.|+++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 599999999998888999999999999999999999999999999885 222 459999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC--C
Q 019047 184 VTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--C 261 (347)
Q Consensus 184 I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~--~ 261 (347)
||||.++++.|+++|+.|||+|+.++++. ++++.+.+.+++++.++++|+++|+|+.++ .||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKVW-WEADNYLREELAENDPGPVYVHPFDDPLIW-EGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCch-HHHHHHHHHHHHhccCCcEEeCCCCCchhh-ccccHHHHHHHHHccccCC
Confidence 99999999999999999999999998642 566777787888775589999999999887 5899999999999976 6
Q ss_pred CCEEEEecCcchHHHHHHHHHHhcC-CCCeEEEEcCCCCccccC-------------------CCCCCCc---hhccccc
Q 019047 262 VDIFVAAIGTGGTITGTGRFLKMMN-KEIKVVGVEPAERSVISG-------------------ENAGYVP---SILDVQL 318 (347)
Q Consensus 262 ~D~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVep~~~~~~~g-------------------~~~~~~p---~~l~~~~ 318 (347)
||+||+|+|+||+++|++.+||+.+ ++++||+|||.+++.+.+ ......+ +...++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 999999999999854422 1111222 2334566
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 319 LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 319 vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+++.|+|+|+++++++|+++|||++||
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ 265 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEP 265 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceech
Confidence 89999999999999999999999999997
No 32
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-49 Score=382.48 Aligned_cols=245 Identities=22% Similarity=0.278 Sum_probs=214.9
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.+.++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++..+++++... ..|+++|+||||+|+|+
T Consensus 11 a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~alA~ 87 (322)
T PRK06110 11 AAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSVAF 87 (322)
T ss_pred HHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHHHH
Confidence 346778899999999999999888899999999999999999999999999998876532 34899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++.++.|+++|+.+||+|+.+++ +++++++++.++++++ +++|+++| ++..+ .||.|+++|
T Consensus 88 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~-~G~~t~~~E 162 (322)
T PRK06110 88 AARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDLV-RGVATYALE 162 (322)
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChHH-hccchHHHH
Confidence 9999999999999999999999999999999999974 5788999999998886 78999998 56665 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC----------CCCC---C--c--
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE----------NAGY---V--P-- 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~----------~~~~---~--p-- 311 (347)
|++|++ .+|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+ .|. ..+. . +
T Consensus 163 i~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~ 241 (322)
T PRK06110 163 LFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEA 241 (322)
T ss_pred HHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHH
Confidence 999984 789999999999999999999999999999999999987543 221 0111 1 1
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|+++.|+|+|+++++++|++++||++||
T Consensus 242 ~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ 277 (322)
T PRK06110 242 LEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEG 277 (322)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEeh
Confidence 233457899999999999999999999999999986
No 33
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=7.6e-50 Score=397.59 Aligned_cols=247 Identities=24% Similarity=0.333 Sum_probs=214.3
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+... .+.|+++|+||||.++|++
T Consensus 16 ~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~alA~~ 91 (420)
T PRK08639 16 AKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQGVAYA 91 (420)
T ss_pred HHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHHHH
Confidence 466788899999999999998888999999999999999999999999988543221 2569999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC-CCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD-PEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~-~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
|+.+|++|+||||++++..|+..++.|||+|+.+. ...+++++++.|.+++++. |++|+++|+|+.++ .||+|+|+|
T Consensus 92 a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~-~G~~tig~E 169 (420)
T PRK08639 92 CRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDVI-AGQGTVAVE 169 (420)
T ss_pred HHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhHh-cchhHHHHH
Confidence 99999999999999999999999999999753221 1235789999999999886 79999999999887 699999999
Q ss_pred HHHhhCCC--CCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCC
Q 019047 254 IWEDTLGC--VDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGY 309 (347)
Q Consensus 254 i~~ql~~~--~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~ 309 (347)
|++|+.+. ||+||+|+|+||+++|++.++|+.+|+++||||||.+++.+. |. .++.
T Consensus 170 I~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~ 249 (420)
T PRK08639 170 ILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGD 249 (420)
T ss_pred HHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccH
Confidence 99999655 999999999999999999999999999999999999875432 21 1112
Q ss_pred CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++.+.++.+|++++|+|+|+.+|+++|++++||++||
T Consensus 250 ~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~ 287 (420)
T PRK08639 250 LTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEP 287 (420)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecc
Confidence 23445578899999999999999999999999999987
No 34
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=4.9e-49 Score=391.70 Aligned_cols=263 Identities=21% Similarity=0.249 Sum_probs=222.9
Q ss_pred HHHHhccCCCCchhhhhhhccCCCceeeccccccCCC--------CeEEEEeCCCCC-CCchhHHHHHHHHHH-----HH
Q 019047 82 EKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV--------GNVAAKLESMEP-CRSVKDRIGYSMITD-----AE 147 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g--------~~Iy~K~E~~~p-tGSfK~Rga~~~~~~-----a~ 147 (347)
++.|..++|......+.+.++++|||++++.|++.+| .+||+|+|++|| |||||+||+.+++.. ++
T Consensus 53 i~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~ 132 (441)
T PRK02991 53 LKRFAPYLAKAFPETAATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLAL 132 (441)
T ss_pred HHhhhhhhhhhCccccccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHH
Confidence 3444445555544456678899999999999987665 699999999999 999999999999875 56
Q ss_pred HcCCCCCCC----------------eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCC
Q 019047 148 ESGDITPGK----------------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (347)
Q Consensus 148 ~~G~~~~g~----------------~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (347)
+.|.+.++. +.||++|+||||.|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.+++
T Consensus 133 ~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~- 211 (441)
T PRK02991 133 EAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG- 211 (441)
T ss_pred HhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC-
Confidence 788776653 469999999999999999999999999999999999999999999999999986
Q ss_pred CChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC--------CCCEEEEecCcchHHHHHHHHHH
Q 019047 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--------CVDIFVAAIGTGGTITGTGRFLK 283 (347)
Q Consensus 212 ~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~--------~~D~vv~pvG~Gg~~~Gi~~~~k 283 (347)
+++++.+.|.++++++++++|+++++++..+ .||+|+|+||++|+++ .||+||+|+|+||+++|++.++|
T Consensus 212 -~~~~a~~~A~~la~~~~~~~~~~~~~~~~~i-aG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk 289 (441)
T PRK02991 212 -DYGVAVEEGRKAAESDPNCYFIDDENSRTLF-LGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLK 289 (441)
T ss_pred -CHHHHHHHHHHHHHhcCCeEeCCCCCchhHH-HhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHH
Confidence 4689999999999887678999998777665 6999999999999952 36799999999999999999999
Q ss_pred hc-CCCCeEEEEcCCCCccc-----cCCC-----------------------CCCCchhccccccCeEEEeCHHHHHHHH
Q 019047 284 MM-NKEIKVVGVEPAERSVI-----SGEN-----------------------AGYVPSILDVQLLDEVIKVTNDEAVNMA 334 (347)
Q Consensus 284 ~~-~~~~~vigVep~~~~~~-----~g~~-----------------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~ 334 (347)
+. .++++||+|||.+++.+ .|.. ++..+|.+.++.+|+++.|+|+|+.+++
T Consensus 290 ~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~ 369 (441)
T PRK02991 290 LAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLL 369 (441)
T ss_pred HhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHH
Confidence 97 68899999999987422 2210 1223345566889999999999999999
Q ss_pred HHHHHhcCccccC
Q 019047 335 RRLALEEGLLVMC 347 (347)
Q Consensus 335 ~~La~~eGI~~G~ 347 (347)
++|++++||++||
T Consensus 370 ~~L~~~~gi~vEp 382 (441)
T PRK02991 370 GLLADTEGIRLEP 382 (441)
T ss_pred HHHHHhcCceeeH
Confidence 9999999999987
No 35
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=7.6e-49 Score=382.25 Aligned_cols=258 Identities=23% Similarity=0.258 Sum_probs=221.3
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEE
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~v 159 (347)
.++.+|.+++|+.+...++++.+++|||+++++|++.+|++||+|+|++|||||||||+|.+++.+++++|. .+|
T Consensus 4 ~~~~ry~~~lp~~~~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~v 78 (352)
T PRK06721 4 GLLNQYASYLPVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAI 78 (352)
T ss_pred chHHHHHHhCCCCCCCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEE
Confidence 456779999999888888999999999999999998888899999999999999999999999999999985 569
Q ss_pred EEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC
Q 019047 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (347)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (347)
|++|+||||+|+|++|+.+|++|+||||++ .+..|+++|+.+||+|+.+++ +++++.+.+.+++++. +.++.+ +.
T Consensus 79 V~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~ 154 (352)
T PRK06721 79 ICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SV 154 (352)
T ss_pred EEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CC
Confidence 999999999999999999999999999987 478999999999999999985 4688889999998886 566665 56
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHH----HHHHHhcC-CCCeEEEEcCCCCccccCCC-------
Q 019047 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGT----GRFLKMMN-KEIKVVGVEPAERSVISGEN------- 306 (347)
Q Consensus 239 n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi----~~~~k~~~-~~~~vigVep~~~~~~~g~~------- 306 (347)
|+.++ .||.|+++||++|+++.||+||+|+|+||+++|+ ..++|+.+ ++++||+|||++++.+.++.
T Consensus 155 n~~~~-~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~t 233 (352)
T PRK06721 155 NPYRI-EGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPET 233 (352)
T ss_pred Cchhh-hhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCc
Confidence 88887 5999999999999976899999999999999985 45566664 88999999999875442211
Q ss_pred ------CCCC---ch--hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 ------AGYV---PS--ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ------~~~~---p~--~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.. .. ......+|+++.|+|+|+++++++|+++|||++||
T Consensus 234 ia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vep 285 (352)
T PRK06721 234 IATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEP 285 (352)
T ss_pred eeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCc
Confidence 1110 01 11234688999999999999999999999999997
No 36
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=4.8e-49 Score=390.40 Aligned_cols=248 Identities=21% Similarity=0.264 Sum_probs=214.3
Q ss_pred hhhhccCCCceeeccccccCC--------CCeEEEEeCCCCC-CCchhHHHHHHHHHH-----HHHcCCCCCCC------
Q 019047 97 DVTQLIGRTPMVYLNKVTEGC--------VGNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGK------ 156 (347)
Q Consensus 97 ~v~~~~~~TPLv~~~~l~~~~--------g~~Iy~K~E~~~p-tGSfK~Rga~~~~~~-----a~~~G~~~~g~------ 156 (347)
.-+.++++|||++++++++.+ +++||+|+|++|| |||||+|+|.+++.. +++.|.++++.
T Consensus 63 ~~~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~ 142 (431)
T TIGR02035 63 AATGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILA 142 (431)
T ss_pred cccCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhc
Confidence 345699999999999998743 5799999999999 999999999999875 77889877764
Q ss_pred ----------eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 019047 157 ----------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (347)
Q Consensus 157 ----------~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (347)
+.|+++|+||||.|||++|+.+|++|+||||+++++.|+++|+.|||+|+.+++ ++++++++|+++++
T Consensus 143 e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~ 220 (431)
T TIGR02035 143 EKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNAD 220 (431)
T ss_pred chhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999986 46899999999999
Q ss_pred cCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC--------CCCEEEEecCcchHHHHHHHHHHhc-CCCCeEEEEcCC
Q 019047 227 NTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--------CVDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEPA 297 (347)
Q Consensus 227 ~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~--------~~D~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVep~ 297 (347)
++++.+++++ .|+.++..||+|+|+||++|+++ .||+|++|+|+||+++|++.++|+. +++++||+|||.
T Consensus 221 ~~~~~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~ 299 (431)
T TIGR02035 221 ADPMCYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPT 299 (431)
T ss_pred hcCCeEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeC
Confidence 8777888887 45556668999999999999953 5779999999999999999999997 789999999999
Q ss_pred CCccc-----cCCC-----------------------CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 298 ERSVI-----SGEN-----------------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 298 ~~~~~-----~g~~-----------------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+++.+ .|.. ++...+.+.++.+|++++|+|+|+++++++|++++||++||
T Consensus 300 ~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEp 377 (431)
T TIGR02035 300 HSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEP 377 (431)
T ss_pred CCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcH
Confidence 87532 2210 11222334456899999999999999999999999999987
No 37
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2.2e-49 Score=391.47 Aligned_cols=259 Identities=24% Similarity=0.223 Sum_probs=225.0
Q ss_pred HHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCe
Q 019047 79 REIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157 (347)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~ 157 (347)
..+|+ |++++|+......+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|++.|. .
T Consensus 55 ~~~~r-y~~~lp~~~~~~~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~ 128 (394)
T PRK08197 55 ANLWR-YHELLPVRDPEHIVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----K 128 (394)
T ss_pred cchhc-chhhCCCCCCCCCCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----C
Confidence 35675 9999999765556999999999999999998888 499999999999999999999999999999985 5
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
.|+++|+||||.|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.++++ ++++.+.+.+.+++. ++++++++
T Consensus 129 ~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~~~~~~~ 205 (394)
T PRK08197 129 HLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEY-GWFDVSTL 205 (394)
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcccccCC
Confidence 699999999999999999999999999999999999999999999999999864 678888888888875 78999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhc-------CCCCeEEEEcCCCCccc-----cC
Q 019047 238 DNMANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMM-------NKEIKVVGVEPAERSVI-----SG 304 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigVep~~~~~~-----~g 304 (347)
.|++++ .|++|+++||++|+++ .||+||+|+|+|++++|++.+|+++ .+.++||+|||++++.+ .|
T Consensus 206 ~np~~i-eG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g 284 (394)
T PRK08197 206 KEPYRI-EGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEG 284 (394)
T ss_pred CCccch-hcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcC
Confidence 999997 5999999999999975 5999999999999999999999986 37899999999987443 22
Q ss_pred CC-------CCC------Cchh--------ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 EN-------AGY------VPSI--------LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ~~-------~~~------~p~~--------l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. +.. ++.+ ..++..+.++.|+|+|+++|+++|+++|||++||
T Consensus 285 ~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vep 348 (394)
T PRK08197 285 KEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACP 348 (394)
T ss_pred CCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECc
Confidence 10 000 1111 1124556789999999999999999999999987
No 38
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=2.9e-49 Score=388.98 Aligned_cols=234 Identities=26% Similarity=0.372 Sum_probs=212.0
Q ss_pred CceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEE
Q 019047 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV 184 (347)
Q Consensus 105 TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I 184 (347)
|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.++++ .+.|+++|+||||+|+|++|+.+|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999999889999999999999999999999999999998886 34699999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCE
Q 019047 185 TMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI 264 (347)
Q Consensus 185 ~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~ 264 (347)
|||++++..|+++++.|||+|+.++. +++++.+.|.+++++. +++|+++|+|+.++ .||+|+|+||++|+ +.+|+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~~~Ei~~q~-~~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFVM-AGQGTIGLEIMEDI-PDVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhhh-hhhHHHHHHHHHhC-CCCCE
Confidence 99999999999999999999999975 5789999999999885 78999999999887 69999999999998 47999
Q ss_pred EEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCCCchhccccccCeE
Q 019047 265 FVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGYVPSILDVQLLDEV 322 (347)
Q Consensus 265 vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~~p~~l~~~~vd~~ 322 (347)
||+|+|+||+++|++.++|+.+|+++||||||++++.+. |. .++..++.+..+.+|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999885432 20 12233445566889999
Q ss_pred EEeCHHHHHHHHHHHHHhcCccccC
Q 019047 323 IKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 323 v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
++|+|+|+.+|+++|++++|+++||
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~ 256 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEG 256 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEech
Confidence 9999999999999999999999987
No 39
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=3.7e-49 Score=390.93 Aligned_cols=245 Identities=23% Similarity=0.292 Sum_probs=219.1
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.+... .+.|+++|+||||+|+|+
T Consensus 13 a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 88 (403)
T PRK07334 13 AAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGVAY 88 (403)
T ss_pred HHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHHHH
Confidence 3467788899999999999998888999999999999999999999999998764432 234899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||.++++.|+.+|+.|||+|+.+++ +++++++.+.+++++. +++|+++|+|+.++ .||+|+|+|
T Consensus 89 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~-~g~~t~~~E 164 (403)
T PRK07334 89 HAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAVI-AGQGTVALE 164 (403)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHHH-HhHHHHHHH
Confidence 9999999999999999999999999999999999974 4788999999998885 88999999999887 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc----CC----------------CCCCCchh
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----GE----------------NAGYVPSI 313 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~----g~----------------~~~~~p~~ 313 (347)
|++|+ +.+|+||+|+|+||+++|++.++|+.+++++||||||++++.+. +. .++..++.
T Consensus 165 i~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 243 (403)
T PRK07334 165 MLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLE 243 (403)
T ss_pred HHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHH
Confidence 99998 57999999999999999999999999999999999999875442 11 13455666
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.++.+|+++.|+|+|+++++++|++.+||++||
T Consensus 244 ~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~ 277 (403)
T PRK07334 244 IVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEG 277 (403)
T ss_pred HHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEec
Confidence 7778899999999999999999999999999987
No 40
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-48 Score=378.36 Aligned_cols=253 Identities=20% Similarity=0.221 Sum_probs=217.3
Q ss_pred chhhHHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCC
Q 019047 75 ATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154 (347)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~ 154 (347)
+++..++.+. +.++...+++|||+++++|++.+|++||+|+|++||+||||+|++.+++.+++++|.+.
T Consensus 4 ~~~~~~i~~A----------~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~- 72 (338)
T PRK06608 4 LQNPQNIAAA----------HNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP- 72 (338)
T ss_pred CCCHHHHHHH----------HHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC-
Confidence 3445556554 35677789999999999999988999999999999999999999999999999998642
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceec
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMF 234 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~ 234 (347)
++|+++|+||||.|+|++|+.+|++|+||||+++++.|+++++.+||+|+.++. .+++.+++.+ +++ +++||+
T Consensus 73 --~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~ 145 (338)
T PRK06608 73 --DKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYI 145 (338)
T ss_pred --CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEc
Confidence 468999999999999999999999999999999999999999999999999973 3677777777 544 589999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC----
Q 019047 235 QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE---- 305 (347)
Q Consensus 235 ~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~---- 305 (347)
++|+|+.++ .||+|+++||++|+++.||+||+|+|+||+++|++.++|+.+++++||||||.+++.. .|.
T Consensus 146 ~~~~~~~~~-~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~ 224 (338)
T PRK06608 146 HPSDSDSTI-AGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRL 224 (338)
T ss_pred CCCCCHHHh-ccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeC
Confidence 999999887 5999999999999976899999999999999999999999999999999999987522 231
Q ss_pred --CCCC------------CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 --NAGY------------VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 --~~~~------------~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.. .++.+. +.+|+++.|+|+|+.+++++|++.+||++||
T Consensus 225 ~~~~~t~~~gl~~~~~~~~~~~~~-~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vep 279 (338)
T PRK06608 225 NYSPNTIADGLKTLSVSARTFEYL-KKLDDFYLVEEYEIYYWTAWLTHLLKVICEP 279 (338)
T ss_pred CCCCCCeecccCCCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHHHHHHcCcEEch
Confidence 0000 012222 3479999999999999999999999999997
No 41
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-49 Score=378.90 Aligned_cols=245 Identities=22% Similarity=0.294 Sum_probs=214.1
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.++++...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.+... ...|+++|+||||+|+|+
T Consensus 10 a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~alA~ 85 (317)
T PRK06815 10 AHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQGVAL 85 (317)
T ss_pred HHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHHHHH
Confidence 4567788899999999999998888999999999999999999999999987643322 245899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||.++++.|+.+|+.+||+|+.++++ ++++...+.+++++. +.+|+++|+|+.++ .||+|+++|
T Consensus 86 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~a~E 161 (317)
T PRK06815 86 AAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD--ALNAELAARRAAEQQ-GKVYISPYNDPQVI-AGQGTIGME 161 (317)
T ss_pred HHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEecCCCChhhh-cchhHHHHH
Confidence 99999999999999999999999999999999999864 678888888888875 78899999998877 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC------------------CCCCC
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE------------------NAGYV 310 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~------------------~~~~~ 310 (347)
|++|++ .+|+||+|+|+||+++|++.++|+.+++++||||||.+++.+ .|. .++..
T Consensus 162 i~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~ 240 (317)
T PRK06815 162 LVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAI 240 (317)
T ss_pred HHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHH
Confidence 999995 699999999999999999999999999999999999987533 121 01112
Q ss_pred chhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 311 p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
++.+..+.+|+++.|+|+|+++++++|+++|||++||
T Consensus 241 ~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vep 277 (317)
T PRK06815 241 TFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEG 277 (317)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEec
Confidence 2344567899999999999999999999999999997
No 42
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=7.2e-49 Score=396.73 Aligned_cols=244 Identities=25% Similarity=0.364 Sum_probs=218.3
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
.+++..+++|||+++++|++.+|++||+|+|++||+||||+|+|++++..+..... .+.||++|+||||.++|++|
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa 84 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSA 84 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHH
Confidence 46788899999999999999899999999999999999999999999988744322 35699999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||++++..|++.++.+||+|+.++. +++++.+.|.+++++. +++|+++|+|+.++ .||+|+|+||+
T Consensus 85 ~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i-~G~gtig~EI~ 160 (499)
T TIGR01124 85 ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLVI-AGQGTLALEIL 160 (499)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-HhhHHHHHHHH
Confidence 99999999999999999999999999999999975 5789999999999886 78999999999887 69999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCCCchh
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGYVPSI 313 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~~p~~ 313 (347)
+|+.+.+|+||+|+|+||+++|++.++|..+|+++||||||.+++.+. |. .++..++.
T Consensus 161 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~ 240 (499)
T TIGR01124 161 RQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFR 240 (499)
T ss_pred HhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHH
Confidence 999668999999999999999999999999999999999999875432 21 01233456
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.++.+|++++|+|+|+.+|++.|++++|++++|
T Consensus 241 ~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~Ep 274 (499)
T TIGR01124 241 LCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEP 274 (499)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEec
Confidence 6678999999999999999999999999999987
No 43
>PLN02550 threonine dehydratase
Probab=100.00 E-value=6.3e-49 Score=399.93 Aligned_cols=243 Identities=23% Similarity=0.339 Sum_probs=216.9
Q ss_pred hhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHH
Q 019047 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (347)
Q Consensus 97 ~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (347)
+++..+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+... .+.|+++|+||||++||++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999998854432 245899999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHH
Q 019047 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (347)
Q Consensus 177 ~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ 256 (347)
.+|++|+||||++++..|++.++.|||+|+.++. +++++.+.|.+++++. +.+|+++|+|+.++ .||+|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~vi-aGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDVI-AGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 4789999999999886 77899999999987 699999999999
Q ss_pred hhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC-----------------CCCCCchhc
Q 019047 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE-----------------NAGYVPSIL 314 (347)
Q Consensus 257 ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~-----------------~~~~~p~~l 314 (347)
|+.+.+|+||+|+|+||+++|++.++|+.+|++|||||||++++.+ .|. .++..++.+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 9965799999999999999999999999999999999999987443 221 112234455
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 315 ~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++++|++++|+|+|+.+|++.|++.+|++++|
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEp 366 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEP 366 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeH
Confidence 678999999999999999999999999999986
No 44
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.7e-48 Score=380.15 Aligned_cols=258 Identities=23% Similarity=0.220 Sum_probs=221.8
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEE
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~v 159 (347)
.++.+|++++|..+...++++++|+|||++++.|++.+|++||+|+|++|||||||||++.+++.+++++|. ..|
T Consensus 7 ~~~~~~~~~lp~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~i 81 (353)
T PRK07409 7 GLIEAYRDRLPVTDDTPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAV 81 (353)
T ss_pred cchHHHHHhCCCCCccCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEE
Confidence 567779999999776667899999999999999998888899999999999999999999999999999885 469
Q ss_pred EEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC
Q 019047 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (347)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (347)
|++|+||||.|+|++|+.+|++|+||||++ ++..|+++|+.+||+|+.+++ +++++.+.+.++++++ +++++++ .
T Consensus 82 v~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~ 157 (353)
T PRK07409 82 ICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-V 157 (353)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-C
Confidence 999999999999999999999999999997 689999999999999999986 4688999999988876 4677765 5
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCC------CCeEEEEcCCCCccccCCC----CC
Q 019047 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVISGEN----AG 308 (347)
Q Consensus 239 n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigVep~~~~~~~g~~----~~ 308 (347)
|+.++ .||.|+++||++|+++.+|+||+|+|+||+++|++.+|++..+ .++||+|||.+++.+..+. +.
T Consensus 158 n~~~~-~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ 236 (353)
T PRK07409 158 NPYRI-EGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPE 236 (353)
T ss_pred Cchhh-hhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCc
Confidence 88887 5999999999999976899999999999999999999988632 5999999998875432211 00
Q ss_pred C--------Cchh------ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 309 Y--------VPSI------LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 309 ~--------~p~~------l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
. .|.. +.++..++++.|+|+|+++++++|+++|||++||
T Consensus 237 ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~p 289 (353)
T PRK07409 237 TIATAIRIGNPASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEP 289 (353)
T ss_pred ceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCc
Confidence 0 0111 1233456799999999999999999999999997
No 45
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=5.4e-49 Score=375.53 Aligned_cols=245 Identities=25% Similarity=0.370 Sum_probs=218.2
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.++.+...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++++.|. ...|+++|+||||+|+|+
T Consensus 7 ~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~alA~ 82 (304)
T cd01562 7 AAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQGVAY 82 (304)
T ss_pred HHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHHHHHH
Confidence 4567888999999999999999888999999999999999999999999999988763 245899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++.+..|+++|+.+||+|+.++++ ++++++.+.+++++. +++|+++|+|+.++ .||+++++|
T Consensus 83 ~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~~-~g~~~~~~E 158 (304)
T cd01562 83 AAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDVI-AGQGTIGLE 158 (304)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcchh-ccHHHHHHH
Confidence 99999999999999999999999999999999999964 688999999999886 78999999999886 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC-----------------CCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE-----------------NAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~-----------------~~~~~p 311 (347)
|++|+++ ||+||+|+|+||+++|++.+||+.+++++||+|||..++.+ +|. .+...+
T Consensus 159 i~~q~~~-~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 237 (304)
T cd01562 159 ILEQVPD-LDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELT 237 (304)
T ss_pred HHHhcCC-CCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHH
Confidence 9999964 99999999999999999999999999999999999877543 221 011223
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|.++.|+|+|+++++++|+++|||++||
T Consensus 238 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~p 273 (304)
T cd01562 238 FEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEP 273 (304)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEch
Confidence 345567899999999999999999999999999997
No 46
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.9e-48 Score=373.36 Aligned_cols=247 Identities=26% Similarity=0.356 Sum_probs=215.1
Q ss_pred hhhHHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCC
Q 019047 76 TSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155 (347)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g 155 (347)
++.+++.+.+ +++...+++|||+++++++.+ |++||+|+|++|||||||+|++.+++.++.+ +
T Consensus 5 ~~~~~i~~a~----------~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~----- 67 (310)
T PRK08246 5 ITRSDVRAAA----------QRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P----- 67 (310)
T ss_pred CCHHHHHHHH----------HHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----
Confidence 3455666653 567888999999999999876 7899999999999999999999999988766 2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (347)
.+.|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.+||+|+.+++ +++++++.+.+++++. +++|++
T Consensus 68 ~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~ 144 (310)
T PRK08246 68 AAGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCH 144 (310)
T ss_pred CCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCC
Confidence 2569999999999999999999999999999999999999999999999999985 4678899999888876 899999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CCC----
Q 019047 236 QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GEN---- 306 (347)
Q Consensus 236 ~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~~---- 306 (347)
+|+|+.++ .||+|+|+||++|+ +.||+||+|+|+||+++|++.+|+. .++||+|||.+++.+. |..
T Consensus 145 ~~~n~~~i-~g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~ 219 (310)
T PRK08246 145 AYDQPEVL-AGAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVP 219 (310)
T ss_pred CCCChhhh-cchHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCC
Confidence 99999987 59999999999998 5799999999999999999999965 4899999999885432 210
Q ss_pred -------------CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 -------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 -------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+..++.+.++.+|+++.|+|+|+.+++++|++++||++||
T Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~ 273 (310)
T PRK08246 220 VSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEP 273 (310)
T ss_pred CCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeeh
Confidence 12234456678899999999999999999999999999987
No 47
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=2.5e-48 Score=376.07 Aligned_cols=235 Identities=24% Similarity=0.346 Sum_probs=209.5
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+.+|||++++.+ +||+|+|++|||||||+|+|.+++.++.+.|. .+.|+++|+||||.|||+
T Consensus 29 A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~alA~ 98 (349)
T PRK08813 29 AQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQGVAW 98 (349)
T ss_pred HHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHHHHHH
Confidence 34778889999999998765 49999999999999999999999999999986 345999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||.++++.|+++++.|||+|+.++. +++++.+.+.++++++ +++|+++|+|+.++ .||+|+|+|
T Consensus 99 aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~i-~G~~Tig~E 174 (349)
T PRK08813 99 SAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDVI-AGQGTVGIE 174 (349)
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999975 5789999999999886 89999999999998 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc----cCC-----------------CCCCCch
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI----SGE-----------------NAGYVPS 312 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~----~g~-----------------~~~~~p~ 312 (347)
|++| .||+||+|+|+||+++|++.++|+ +.++||||||++++.+ .|. .++..++
T Consensus 175 I~e~---~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~ 249 (349)
T PRK08813 175 LAAH---APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTR 249 (349)
T ss_pred HHcC---CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHH
Confidence 9987 489999999999999999999996 4699999999987432 121 1234556
Q ss_pred hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 ~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.++.+|+++.|+|+|+.+|+++|++++|++++|
T Consensus 250 ~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~ 284 (349)
T PRK08813 250 RLCSSLLDDVVIVREAELRETLVRLALEEHVIAEG 284 (349)
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEE
Confidence 66778899999999999999999999999999986
No 48
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.9e-48 Score=393.46 Aligned_cols=244 Identities=25% Similarity=0.357 Sum_probs=218.1
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
.+++..+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+... .+.||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 46788899999999999999899999999999999999999999999988764322 35699999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||++++..|++.++.+||+|+.++. ++++++++|.+++++. +++|+++|+|+.++ .||+|+|+||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i-~G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDVI-AGQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHHH-HhHHHHHHHHH
Confidence 99999999999999999999999999999999985 5799999999999885 88999999999987 69999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCCCchh
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGYVPSI 313 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~~p~~ 313 (347)
+|+++.+|+||+|+|+||+++|++.++|..+|+++||||||.+++.+. |. .++..++.
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~ 243 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFR 243 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHH
Confidence 999656999999999999999999999999999999999998875432 21 11223455
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.++.+|++++|+|+|+.+|+++|++++|++++|
T Consensus 244 ~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~ep 277 (504)
T PRK09224 244 LCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEP 277 (504)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcH
Confidence 6678999999999999999999999999999987
No 49
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=4e-48 Score=382.84 Aligned_cols=255 Identities=24% Similarity=0.221 Sum_probs=221.1
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCC-eEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeE
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTV 158 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~-~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~ 158 (347)
.+|+ |++++|+. ...+++++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.++++.|. ..
T Consensus 46 ~~wr-y~~~lp~~--~~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~ 117 (397)
T PRK06260 46 GVWR-YKELLPVK--KKIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KT 117 (397)
T ss_pred ceee-ehhhcCCC--CCcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CE
Confidence 5776 89999996 2478999999999999999988887 99999999999999999999999999999985 56
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
|+++|+||||.|+|++|+.+|++|+||||++ ++..|+.+++.+||+|+.+++ +++++++.+.+++++. ++|+++++
T Consensus 118 vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~ 194 (397)
T PRK06260 118 VACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI 194 (397)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC
Confidence 8999999999999999999999999999997 789999999999999999986 4688999999988876 78888887
Q ss_pred CChHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcC------CCCeEEEEcCCCCccc-----cCC
Q 019047 238 DNMANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVI-----SGE 305 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigVep~~~~~~-----~g~ 305 (347)
|+.++ .||+|+++||++|+++ .||+||+|+|+||+++|++.+|+++. +.+|||+|||.+++.+ .|.
T Consensus 195 -np~~~-~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~ 272 (397)
T PRK06260 195 -NPFRL-EGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGK 272 (397)
T ss_pred -Cchhh-cchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCC
Confidence 88887 5999999999999976 79999999999999999999999875 3489999999987533 221
Q ss_pred C-------CCC------C--ch------hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 N-------AGY------V--PS------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 ~-------~~~------~--p~------~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
. +.. + |. .+.++..++++.|+|+|++++++.|+++|||++||
T Consensus 273 ~~~~~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vep 335 (397)
T PRK06260 273 DEIEPVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEP 335 (397)
T ss_pred CcccccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCc
Confidence 1 000 0 21 12334457899999999999999999999999997
No 50
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=5.8e-48 Score=372.03 Aligned_cols=253 Identities=25% Similarity=0.258 Sum_probs=220.4
Q ss_pred HHhccCCCCchhhhhhhccCCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 019047 84 EEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEP 162 (347)
Q Consensus 84 ~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a 162 (347)
+|.+++|.. ..+++.+++++|||+++++|++..| .+||+|+|++|||||||+|++.+++.+++++|. +.|+++
T Consensus 3 ~~~~~~~~~-~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~ 76 (324)
T cd01563 3 RYRELLPVT-EDDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACA 76 (324)
T ss_pred cchhhCCCC-CCCcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEe
Confidence 388899976 4567999999999999999998776 799999999999999999999999999999884 568999
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHH
Q 019047 163 TTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMAN 242 (347)
Q Consensus 163 ssGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~ 242 (347)
|+||||+|+|++|+.+|++|+||||+++++.|+++|+.+||+|+.++. +++++.+.+.++++++ .+|+++|+|+.+
T Consensus 77 SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~ 152 (324)
T cd01563 77 STGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR 152 (324)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce
Confidence 999999999999999999999999999999999999999999999986 4678888999988875 788999999999
Q ss_pred HHHHHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcC------CCCeEEEEcCCCCccc-----cCCC----
Q 019047 243 LKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVI-----SGEN---- 306 (347)
Q Consensus 243 ~~~g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigVep~~~~~~-----~g~~---- 306 (347)
+ .||.|++.||++|+++ .+|+||+|+|+||+++|++.++|+.. ++++||||||.+++.+ .|..
T Consensus 153 ~-~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~ 231 (324)
T cd01563 153 L-EGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEP 231 (324)
T ss_pred e-cchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCc
Confidence 7 5999999999999964 69999999999999999999999874 5799999999887432 2210
Q ss_pred ------------CCCC---c--hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 ------------AGYV---P--SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ------------~~~~---p--~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.... + +.+..+..|+++.|+|+|+++++++|+++|||++||
T Consensus 232 ~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p 289 (324)
T cd01563 232 VENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEP 289 (324)
T ss_pred CCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCc
Confidence 0010 1 122345668999999999999999999999999997
No 51
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.4e-47 Score=368.80 Aligned_cols=239 Identities=23% Similarity=0.320 Sum_probs=208.2
Q ss_pred hccCCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHc
Q 019047 100 QLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK 178 (347)
Q Consensus 100 ~~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~ 178 (347)
..+++|||+++++|++.+| .+||+|+|++|||||||+|++.+++.+++++|. +.|+++|+||||+|+|++|+.+
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~ 85 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLY 85 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHc
Confidence 4588999999999999888 599999999999999999999999999999985 5689999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC-Ch-HHHHHHHHHHHHHHHH
Q 019047 179 GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD-NM-ANLKIHFDSTGPEIWE 256 (347)
Q Consensus 179 Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~-n~-~~~~~g~~ti~~Ei~~ 256 (347)
|++|+||||.+.+..|+++|+.+||+|+.++++ ++++++.+.+++++. ++|++++++ |+ .++ .||+|+++||++
T Consensus 86 G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~-~G~~t~a~Ei~~ 161 (319)
T PRK06381 86 GLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKEN-GIYDANPGSVNSVVDI-EAYSAIAYEIYE 161 (319)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC--HHHHHHHHHHHHHHc-CcEecCCCCCCcchHh-hhHHHHHHHHHH
Confidence 999999999999999999999999999999864 678899999998875 788888886 66 455 699999999999
Q ss_pred hhCCCCCEEEEecCcchHHHHHHHHHHhc------CCCCeEEEEcCCCCccc-----cCC------CCCCC-------c-
Q 019047 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMM------NKEIKVVGVEPAERSVI-----SGE------NAGYV-------P- 311 (347)
Q Consensus 257 ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~------~~~~~vigVep~~~~~~-----~g~------~~~~~-------p- 311 (347)
|++..||+||+|+|+||+++|++.+||+. +++++||+|||..++.+ .|. ..+.+ |
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~ 241 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPL 241 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCc
Confidence 99768999999999999999999999998 78999999999886322 221 01111 1
Q ss_pred -----------hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 -----------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 -----------~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++..++.+.|+|+|+++++++|+++|||++||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~ep 288 (319)
T PRK06381 242 VSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALP 288 (319)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCc
Confidence 112345566899999999999999999999999997
No 52
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=4.8e-47 Score=368.93 Aligned_cols=248 Identities=21% Similarity=0.168 Sum_probs=213.8
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEE
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~v 159 (347)
.+|+ |++++|+.+. ..+++++|.|||+++. .+||+|+|++|||||||||++.+++.++++.|. ..|
T Consensus 42 ~~wr-y~~~lP~~~~-~~~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~v 107 (347)
T PRK08329 42 DMRR-YIDYLPVDEE-FLPHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEV 107 (347)
T ss_pred chhh-hHHhCCCCCC-CCCcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEE
Confidence 5776 9999999664 3579999999999872 489999999999999999999999999999986 569
Q ss_pred EEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCC
Q 019047 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDN 239 (347)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n 239 (347)
+++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.++++ ++++.+.+.+++++. +.+|++++.|
T Consensus 108 v~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~n 184 (347)
T PRK08329 108 VIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLN 184 (347)
T ss_pred EEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCC
Confidence 9999999999999999999999999999999999999999999999999864 467788888888875 6788888889
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcC------CCCeEEEEcCCCCccccC---------
Q 019047 240 MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVISG--------- 304 (347)
Q Consensus 240 ~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigVep~~~~~~~g--------- 304 (347)
+.++ .||+|+++||++|++ .||+||+|+|+||+++|++.+||++. +.++||+|||.+++.+..
T Consensus 185 p~~~-eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a 262 (347)
T PRK08329 185 PYFL-EGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLA 262 (347)
T ss_pred chhh-ccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCcee
Confidence 9887 599999999999995 89999999999999999999999863 568999999998754422
Q ss_pred --CCCCCCc-----hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 --ENAGYVP-----SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 --~~~~~~p-----~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
......+ +.+.++..+.++.|+|+|+.+|+++|++ +||+++|
T Consensus 263 ~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vep 311 (347)
T PRK08329 263 DGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEP 311 (347)
T ss_pred eeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECc
Confidence 1111111 1234556678999999999999999995 8999997
No 53
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1e-46 Score=370.36 Aligned_cols=283 Identities=19% Similarity=0.263 Sum_probs=225.0
Q ss_pred ccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhhh----hhccC-CCceeeccccccCC-CCeEEEEeCCCCCCCc
Q 019047 60 AKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV----TQLIG-RTPMVYLNKVTEGC-VGNVAAKLESMEPCRS 133 (347)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~-~TPLv~~~~l~~~~-g~~Iy~K~E~~~ptGS 133 (347)
.+...+....-|+...+...||.+.|......+....++ ..+++ +|||+++++|++.+ |++||+|+|++|||||
T Consensus 9 ~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS 88 (397)
T PRK04346 9 GYFGEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGA 88 (397)
T ss_pred CcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccc
Confidence 344557777788888889999999999877776544443 23455 69999999999988 5799999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CC--HHHHHHHHhcCCEEEEECC
Q 019047 134 VKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TN--LERRILLRAFGAEIILTDP 210 (347)
Q Consensus 134 fK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~--~~~~~~l~~~GA~V~~~~~ 210 (347)
||+|++..++..|++.|+ +++|+++|+||||.|+|++|+++|++|+||||+. ++ ..++.+|+.+||+|+.++.
T Consensus 89 ~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~ 164 (397)
T PRK04346 89 HKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTS 164 (397)
T ss_pred hHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECC
Confidence 999999999999999996 5667779999999999999999999999999985 33 3567889999999999984
Q ss_pred -CCChHHHHHHHHH-HHHcCCCceec-CCCCC----hHHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHH
Q 019047 211 -EKGLRGALDKAEE-IVLNTPNAYMF-QQFDN----MANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTG 279 (347)
Q Consensus 211 -~~~~~~a~~~a~~-~a~~~~~~~~~-~~~~n----~~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~ 279 (347)
..+++++++++.+ ++.+..+.+|+ .++.+ +.++..||+|||.||++|+. ..||+||+|||+|||++|++
T Consensus 165 g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~ 244 (397)
T PRK04346 165 GSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIF 244 (397)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHH
Confidence 3467888888876 45553455555 22222 34455699999999999983 37999999999999999999
Q ss_pred HHHHhcCCCCeEEEEcCCCCccccC--------CC-------------------------------CCCCc--hhccccc
Q 019047 280 RFLKMMNKEIKVVGVEPAERSVISG--------EN-------------------------------AGYVP--SILDVQL 318 (347)
Q Consensus 280 ~~~k~~~~~~~vigVep~~~~~~~g--------~~-------------------------------~~~~p--~~l~~~~ 318 (347)
.+|++ .++++||||||.++...++ +. ++..| +.+....
T Consensus 245 ~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~ 323 (397)
T PRK04346 245 HPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIG 323 (397)
T ss_pred HHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcC
Confidence 98976 7899999999987532111 10 11111 2233456
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 319 LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 319 vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++++.|+|+|+++|+++|++.|||++|+
T Consensus 324 ~~~~v~VtD~eal~a~~~L~~~eGIi~~~ 352 (397)
T PRK04346 324 RAEYVSITDDEALEAFQLLSRLEGIIPAL 352 (397)
T ss_pred CeEEEEECHHHHHHHHHHHHHHcCCEecc
Confidence 77999999999999999999999999764
No 54
>PLN02569 threonine synthase
Probab=100.00 E-value=6.7e-47 Score=380.29 Aligned_cols=262 Identities=16% Similarity=0.142 Sum_probs=220.7
Q ss_pred HHHHHHHhc-cCCCCchhhhhhhccCCCceeeccccccC-CCC-eEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCC
Q 019047 79 REIEKEEGN-DFHGVNIAEDVTQLIGRTPMVYLNKVTEG-CVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155 (347)
Q Consensus 79 ~~~~~~~~~-~~~~~~~~~~v~~~~~~TPLv~~~~l~~~-~g~-~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g 155 (347)
..+|+ |++ .+|..+....+++++|.|||+++++|++. +|. +||+|+|++|||||||||++..++..+.+.|.....
T Consensus 108 ~g~wr-y~~~~lP~~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~ 186 (484)
T PLN02569 108 SGVWS-KKEWVLPEIDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKP 186 (484)
T ss_pred CCccc-cccccCCCCCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCC
Confidence 46786 888 67887666679999999999999999988 784 999999999999999999999999999987753211
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceec
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMF 234 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~ 234 (347)
...|+++|+||||.|+|++|+.+|++|+||||++ .+..|+.+|+.+||+|+.+++ +++++++.+.++++++ ++|++
T Consensus 187 ~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~ 263 (484)
T PLN02569 187 VVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLA 263 (484)
T ss_pred ccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEec
Confidence 2468999999999999999999999999999996 888999999999999999996 5789999999988876 68888
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCC-CCEEEEecCcchHHHHHHHHHHhc------CCCCeEEEEcCCCCcccc----
Q 019047 235 QQFDNMANLKIHFDSTGPEIWEDTLGC-VDIFVAAIGTGGTITGTGRFLKMM------NKEIKVVGVEPAERSVIS---- 303 (347)
Q Consensus 235 ~~~~n~~~~~~g~~ti~~Ei~~ql~~~-~D~vv~pvG~Gg~~~Gi~~~~k~~------~~~~~vigVep~~~~~~~---- 303 (347)
+++ |+.++ .||+|+++||++|++++ ||+||+|+|+||++.|++.+||++ .+.+|||+|||++|+.+.
T Consensus 264 n~~-Np~~i-eG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~ 341 (484)
T PLN02569 264 NSL-NSLRL-EGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYK 341 (484)
T ss_pred CCC-Ccchh-HhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHH
Confidence 988 88887 59999999999999865 999999999999999999999986 356899999999885442
Q ss_pred -CCC-------CC--------CCchhc------cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 304 -GEN-------AG--------YVPSIL------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 304 -g~~-------~~--------~~p~~l------~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|.. .. ..|..+ .++.-+.++.|+|+|+.+|+++ ++++||++||
T Consensus 342 ~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vep 406 (484)
T PLN02569 342 SGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCP 406 (484)
T ss_pred cCCCccccCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECc
Confidence 211 00 012211 1222345799999999999999 8899999997
No 55
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.5e-46 Score=368.06 Aligned_cols=283 Identities=20% Similarity=0.207 Sum_probs=226.2
Q ss_pred ccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhhh----hhccC-CCceeeccccccCC-CCeEEEEeCCCCCCCc
Q 019047 60 AKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV----TQLIG-RTPMVYLNKVTEGC-VGNVAAKLESMEPCRS 133 (347)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~-~TPLv~~~~l~~~~-g~~Iy~K~E~~~ptGS 133 (347)
.+...+.....|+...+...||.+.|......++..+++ ..+++ +|||+++++|++.+ |++||+|+|++|||||
T Consensus 13 ~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS 92 (402)
T PRK13028 13 GFFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGA 92 (402)
T ss_pred CCcCCcCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcc
Confidence 344557777788888889999999999887776655554 23454 79999999999988 5799999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHhcCCEEEEECC
Q 019047 134 VKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL---ERRILLRAFGAEIILTDP 210 (347)
Q Consensus 134 fK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~---~~~~~l~~~GA~V~~~~~ 210 (347)
||+|++..++..+++.|+ +++|+++|+||||+|+|++|+.+|++|+||||+.... .++.+|+.+||+|+.++.
T Consensus 93 ~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~ 168 (402)
T PRK13028 93 HKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTR 168 (402)
T ss_pred hHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcC
Confidence 999999999999999996 4567789999999999999999999999999985333 567799999999999984
Q ss_pred -CCChHHHHHHHHH-HHHcCCCceecC-CCC----ChHHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHH
Q 019047 211 -EKGLRGALDKAEE-IVLNTPNAYMFQ-QFD----NMANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTG 279 (347)
Q Consensus 211 -~~~~~~a~~~a~~-~a~~~~~~~~~~-~~~----n~~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~ 279 (347)
..++++++++|.+ ++++.++.+|+. ++. .+.++..||+|++.||.+|+. ..||+||+|||+|||++|++
T Consensus 169 g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~ 248 (402)
T PRK13028 169 GGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLF 248 (402)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHH
Confidence 3468899999865 455544566662 211 134555699999999999973 36999999999999999999
Q ss_pred HHHHhcCCCCeEEEEcCCC--------CccccCCCC-------------------------------CCCch--hccccc
Q 019047 280 RFLKMMNKEIKVVGVEPAE--------RSVISGENA-------------------------------GYVPS--ILDVQL 318 (347)
Q Consensus 280 ~~~k~~~~~~~vigVep~~--------~~~~~g~~~-------------------------------~~~p~--~l~~~~ 318 (347)
.+|++ .++++||||||.+ ++.+..+.+ +..|. .+....
T Consensus 249 ~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~ 327 (402)
T PRK13028 249 SAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIG 327 (402)
T ss_pred HHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhc
Confidence 99986 4889999999988 433322111 11111 123345
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 319 LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 319 vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|+++.|+|+|+++|+++|++.|||++||
T Consensus 328 ~~~~v~VtD~eal~a~~~La~~eGIi~~~ 356 (402)
T PRK13028 328 RVEYVTATDEEALDAFFLLSRTEGIIPAL 356 (402)
T ss_pred CcEEEEECHHHHHHHHHHHHHhcCCeecc
Confidence 68899999999999999999999999885
No 56
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.2e-46 Score=372.00 Aligned_cols=249 Identities=20% Similarity=0.173 Sum_probs=209.9
Q ss_pred hhhh--hhccCCCceeeccccccCCC-CeEEEEeCCC-CCCCchhHHHHHHHHHHHHH--cCCC----------------
Q 019047 95 AEDV--TQLIGRTPMVYLNKVTEGCV-GNVAAKLESM-EPCRSVKDRIGYSMITDAEE--SGDI---------------- 152 (347)
Q Consensus 95 ~~~v--~~~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~-~ptGSfK~Rga~~~~~~a~~--~G~~---------------- 152 (347)
.+++ ...+++|||+++++|++.+| ++||+|+|++ |||||||+||+.+.+.++.. .+.-
T Consensus 33 ~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (399)
T PRK08206 33 RAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVRE 112 (399)
T ss_pred HHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHH
Confidence 3555 45788999999999999999 5999999997 59999999999999888763 2220
Q ss_pred -CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCc
Q 019047 153 -TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231 (347)
Q Consensus 153 -~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~ 231 (347)
.++ .+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.+||+|+.+++ ++++++..+.+++++. ++
T Consensus 113 ~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~ 188 (399)
T PRK08206 113 KLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GW 188 (399)
T ss_pred hccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CC
Confidence 011 258999999999999999999999999999999999999999999999999996 4788999999988876 78
Q ss_pred eecC-----CCCC-hHHHHHHHHHHHHHHHHhhCC---CCCEEEEecCcchHHHHHHHHHHhcC--CCCeEEEEcCCCCc
Q 019047 232 YMFQ-----QFDN-MANLKIHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMN--KEIKVVGVEPAERS 300 (347)
Q Consensus 232 ~~~~-----~~~n-~~~~~~g~~ti~~Ei~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~~--~~~~vigVep~~~~ 300 (347)
++++ +|+| +.++..||+|+++||++|+++ .||+||+|+|+||+++|++.++|+.+ +.++||+|||++++
T Consensus 189 ~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~ 268 (399)
T PRK08206 189 VVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQAD 268 (399)
T ss_pred EEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCc
Confidence 8876 6876 556667999999999999975 69999999999999999999999884 47999999999874
Q ss_pred cc-----cCCC------------------CCCCchhccccccCeEEEeCHHHHHHHHHHHHH----hcCccccC
Q 019047 301 VI-----SGEN------------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLAL----EEGLLVMC 347 (347)
Q Consensus 301 ~~-----~g~~------------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~----~eGI~~G~ 347 (347)
.+ .|.. ++..++.+.++.+|+++.|+|+|+++++++|++ ++||++||
T Consensus 269 ~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vep 342 (399)
T PRK08206 269 CLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGE 342 (399)
T ss_pred hHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecc
Confidence 43 2210 111334455678999999999999999999996 78999987
No 57
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=1.5e-46 Score=376.33 Aligned_cols=253 Identities=20% Similarity=0.240 Sum_probs=215.5
Q ss_pred HHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeE
Q 019047 79 REIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTV 158 (347)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~ 158 (347)
..+|+ |++++|..+ ..+++++++|||+++ ++++.+|.+||+|+|++|||||||||++.+++.+|++.|. +.
T Consensus 44 ~~~wr-y~~~lp~~~--~~v~l~~G~TPLv~~-~~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~ 114 (442)
T PRK05638 44 PGVWR-YKELLPQVK--KIISLGEGGTPLIRA-RISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NG 114 (442)
T ss_pred CChhh-hhhhCCCcC--CccccCCCCCcEEcc-cchHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CE
Confidence 35777 889999865 558899999999998 4777778899999999999999999999999999999875 56
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (347)
|+++|+||||.|+|++|+.+|++|+||||++++..|+.+|+.|||+|+.+++ +++++++.+.+++++. ++|+++++.
T Consensus 115 vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~ 191 (442)
T PRK05638 115 FIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEY 191 (442)
T ss_pred EEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCC
Confidence 8999999999999999999999999999999999999999999999999985 4689999999988875 799999999
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCC------CCeEEEEcCCCCcccc----CCC--
Q 019047 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVIS----GEN-- 306 (347)
Q Consensus 239 n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigVep~~~~~~~----g~~-- 306 (347)
|+.++ .||+|+++||++|++ ||+||+|+|+||+++|++.+|+++.+ .++||+|||++++.+. +..
T Consensus 192 np~~~-eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~ 268 (442)
T PRK05638 192 NIIGL-EGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTK 268 (442)
T ss_pred ChhHh-hhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCC
Confidence 99987 599999999999995 99999999999999999999999754 4799999998774432 111
Q ss_pred -CC--------CCch------hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 -AG--------YVPS------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 -~~--------~~p~------~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. ..|. .+.++..+.++.|+|+++.++.+.|+ ++||++||
T Consensus 269 ~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~-~eGi~~ep 323 (442)
T PRK05638 269 CNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLA-KEGIFAEL 323 (442)
T ss_pred CCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCceecc
Confidence 00 0111 11233456789999999888877776 68999997
No 58
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=2e-46 Score=362.79 Aligned_cols=237 Identities=22% Similarity=0.254 Sum_probs=198.7
Q ss_pred hccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCC
Q 019047 86 GNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTG 165 (347)
Q Consensus 86 ~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assG 165 (347)
+..+|... ..+++++|+|||++.+ +||+|+|++|||||||||++..++.++++.|. +.|+++|+|
T Consensus 42 ~~~lp~~~--~~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsG 106 (338)
T PRK06450 42 RKNFPYIK--HFISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSG 106 (338)
T ss_pred HhhCCCCc--CCCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCc
Confidence 35677654 3689999999999864 69999999999999999999999999999885 569999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHH
Q 019047 166 NTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKI 245 (347)
Q Consensus 166 N~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~ 245 (347)
|||.|+|++|+.+|++|+||||+++++.|+.+|+.|||+|+.++++ ++++.+ ++++. +.+|++++.|+.++ .
T Consensus 107 N~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~--~~~~~~----~a~~~-g~~~~~~~~np~~i-e 178 (338)
T PRK06450 107 NAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVRGS--REDVAK----AAENS-GYYYASHVLQPQFR-D 178 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHH----HHHhc-CeEeccCCCCccHH-H
Confidence 9999999999999999999999999999999999999999999864 444433 35554 67888888899987 5
Q ss_pred HHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcCC------CCeEEEEcCCCCcccc----CCCC------C
Q 019047 246 HFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVIS----GENA------G 308 (347)
Q Consensus 246 g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigVep~~~~~~~----g~~~------~ 308 (347)
||+||++||++|+++ .||+||+|+|+|++++|++++|+++.+ .+|||+|||++++.+. |... .
T Consensus 179 G~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~ 258 (338)
T PRK06450 179 GIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVT 258 (338)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCC
Confidence 999999999999974 699999999999999999999998753 4899999999875432 2110 0
Q ss_pred --------CCchh------ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 309 --------YVPSI------LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 309 --------~~p~~------l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..|.. ..++. ++++.|+|+|+++|+++|++ +||+++|
T Consensus 259 tia~~l~~~~p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vep 309 (338)
T PRK06450 259 SIADALVSTRPFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEY 309 (338)
T ss_pred cceeeeecCCCCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEECh
Confidence 01211 12233 78999999999999999996 7999987
No 59
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-46 Score=355.56 Aligned_cols=245 Identities=23% Similarity=0.277 Sum_probs=221.8
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
...++..+-.|||.+.-.|++.+|.++|+|+|++||+||||.||+.+++.+.-++++ +..|+++|+||||.|+|++
T Consensus 57 ~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~Aya 132 (457)
T KOG1250|consen 57 HFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAAYA 132 (457)
T ss_pred hhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHHHH
Confidence 355777888999999988999999999999999999999999999999998887775 5679999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+|+||..++..|.+.++.+||+|++.+. ++++|..+|.++++++ ++.|+++||+|+.| .|++||+.||
T Consensus 133 a~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I~-aGqgTig~EI 208 (457)
T KOG1250|consen 133 ARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDIW-AGQGTIGLEI 208 (457)
T ss_pred HHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchhh-cCcchHHHHH
Confidence 999999999999999999999999999999999885 4789999999999997 89999999999998 6999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC-----------------CCCCCch
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE-----------------NAGYVPS 312 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~-----------------~~~~~p~ 312 (347)
.+|+...++.|+|||||||+++||+.++|+..|+++|||||+.+|..+ .|. ..+..++
T Consensus 209 l~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf 288 (457)
T KOG1250|consen 209 LEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTF 288 (457)
T ss_pred HHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHH
Confidence 999966666999999999999999999999999999999999998433 231 1244455
Q ss_pred hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 ~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.+..+|+++.|+|+|+..|+++|.++|..++.|
T Consensus 289 ~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEp 323 (457)
T KOG1250|consen 289 ELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEP 323 (457)
T ss_pred HHHHhcCceEEEeccHHHHHHHHHHHHhhhheecc
Confidence 66788999999999999999999999999988876
No 60
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=2.4e-45 Score=361.31 Aligned_cols=281 Identities=22% Similarity=0.266 Sum_probs=223.4
Q ss_pred ccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhh----hhhccC-CCceeeccccccCC------CCeEEEEeCCC
Q 019047 60 AKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAED----VTQLIG-RTPMVYLNKVTEGC------VGNVAAKLESM 128 (347)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~-~TPLv~~~~l~~~~------g~~Iy~K~E~~ 128 (347)
.+...+.....|+...+...||.+.|......++...+ +..++| +|||+++++|++.+ |++||+|+|++
T Consensus 17 ~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~l 96 (410)
T PLN02618 17 GRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDL 96 (410)
T ss_pred CcccCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCC
Confidence 34456777888888888999999999887777654333 455674 89999999999876 47999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHhcCCEE
Q 019047 129 EPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEI 205 (347)
Q Consensus 129 ~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~---~~~~~~~l~~~GA~V 205 (347)
|||||||+|++..++..|++.|+ +.+|+++|+||||.|+|++|+.+|++|+||||+.. ...++.+|+.+||+|
T Consensus 97 nptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~V 172 (410)
T PLN02618 97 NHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEV 172 (410)
T ss_pred CCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEE
Confidence 99999999999999999999886 45666778999999999999999999999999852 345677999999999
Q ss_pred EEECC-CCChHHHHHHHH-HHHHcCCCceec-------CCCCChHHHHHHHHHHHHHHHHhh----CCCCCEEEEecCcc
Q 019047 206 ILTDP-EKGLRGALDKAE-EIVLNTPNAYMF-------QQFDNMANLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTG 272 (347)
Q Consensus 206 ~~~~~-~~~~~~a~~~a~-~~a~~~~~~~~~-------~~~~n~~~~~~g~~ti~~Ei~~ql----~~~~D~vv~pvG~G 272 (347)
+.++. +.++++++.++. +++++..+.+|+ ++| +..+..|++|||.||.+|+ +..||+||+|||+|
T Consensus 173 i~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~--~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgG 250 (410)
T PLN02618 173 RPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY--PMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGG 250 (410)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCC--HHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 99964 457888886654 566654456666 333 2333469999999998776 34799999999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEcCCCCccc--------cCCCC-------------------------------CCCch-
Q 019047 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVI--------SGENA-------------------------------GYVPS- 312 (347)
Q Consensus 273 g~~~Gi~~~~k~~~~~~~vigVep~~~~~~--------~g~~~-------------------------------~~~p~- 312 (347)
||++|++.+|+. +++++||||||.++... ..+.+ +..|.
T Consensus 251 g~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~ 329 (410)
T PLN02618 251 SNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEH 329 (410)
T ss_pred HHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHH
Confidence 999999999975 68999999999986221 11111 11111
Q ss_pred -hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 -ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 -~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+....+|+++.|+|+|+++|+++|++.|||++|+
T Consensus 330 ~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~ 365 (410)
T PLN02618 330 SFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPAL 365 (410)
T ss_pred HHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEch
Confidence 12233678999999999999999999999999885
No 61
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=4.4e-45 Score=338.35 Aligned_cols=214 Identities=40% Similarity=0.589 Sum_probs=201.3
Q ss_pred CceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEE
Q 019047 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV 184 (347)
Q Consensus 105 TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I 184 (347)
|||+++++|++..+.+||+|+|+.|||||||||++.+++..+++.|.+ ++ ..|+++|+||||.|+|++|+.+|++|+|
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999987778999999999999999999999999999999865 33 5689999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC-CCC
Q 019047 185 TMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG-CVD 263 (347)
Q Consensus 185 ~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~-~~D 263 (347)
|||.+.+..++++|+.+||+|+.++++ ++++...+.+++++.++++|+++|.|+.++ .||.++++||.+|+.+ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~-~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANI-AGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHH-HHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999965 688999999999986689999999999998 5899999999999976 699
Q ss_pred EEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCCCCCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCc
Q 019047 264 IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGL 343 (347)
Q Consensus 264 ~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI 343 (347)
+||+|+|+||+++|++.+|++.++.++||+||| +++.|+|+|+++++++|++.|||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~------------------------~~~~v~d~~~~~a~~~l~~~~gi 211 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP------------------------EVVTVSDEEALEAIRLLAREEGI 211 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee------------------------eEEEECHHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999 89999999999999999999999
Q ss_pred cccC
Q 019047 344 LVMC 347 (347)
Q Consensus 344 ~~G~ 347 (347)
++||
T Consensus 212 ~~~p 215 (244)
T cd00640 212 LVEP 215 (244)
T ss_pred eECH
Confidence 9997
No 62
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=100.00 E-value=3e-46 Score=346.63 Aligned_cols=299 Identities=19% Similarity=0.190 Sum_probs=249.2
Q ss_pred Ccccccccccccccc------cccccCCCCCCCCcccchhhHHHHHHHhc---cCCCCchhhhhhhcc-CCCceeecccc
Q 019047 44 NGALATRRRILPIVA------SAKAGAAASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVTQLI-GRTPMVYLNKV 113 (347)
Q Consensus 44 ~~~~~~r~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~-~~TPLv~~~~l 113 (347)
...|+.||++...|. +.-|.+.++.....+...++.++++|+.. |+++++...+++..| +||||+++++|
T Consensus 8 ~~eiPk~WYNIlpDLPepLppP~dP~t~~~~~~e~L~~ifp~~lieqE~s~eR~i~IP~Ev~e~Y~~~gRPTPL~RA~~L 87 (432)
T COG1350 8 EDEIPKRWYNILPDLPEPLPPPLDPETGEPIRPELLKKIFPKKLIEQEFSGERYIKIPEEVREAYLQIGRPTPLIRAKNL 87 (432)
T ss_pred cccccHHHHhcccCCCCCCCCCCCccccCCCCHHHHHHhccHHHHHHHhhhhhcccCcHHHHHHHHHhCCCCchhhhhhH
Confidence 456888999985444 22222344444455566799999999844 899999999999999 58999999999
Q ss_pred ccCCC--CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC---
Q 019047 114 TEGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA--- 188 (347)
Q Consensus 114 ~~~~g--~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~--- 188 (347)
++.+| ++||+|+|+..||||||++.|..++++++..|. ++.++++++|+||.||+++|+.||++|+|||.+
T Consensus 88 E~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy 163 (432)
T COG1350 88 EEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSY 163 (432)
T ss_pred HHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHHHHHHHHhCceeEEEEEehhh
Confidence 99665 799999999999999999999999999999998 788999999999999999999999999999997
Q ss_pred CCCHHHHHHHHhcCCEEEEECCCCChHH----------------HHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHH
Q 019047 189 STNLERRILLRAFGAEIILTDPEKGLRG----------------ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (347)
Q Consensus 189 ~~~~~~~~~l~~~GA~V~~~~~~~~~~~----------------a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~ 252 (347)
.+++.++.+|+.|||+|+.++++.+..+ |+++|.|.+-++++..|..+..-++++ .||.+||+
T Consensus 164 ~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnhvl-lhQTViGl 242 (432)
T COG1350 164 YQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNHVL-LHQTVIGL 242 (432)
T ss_pred hcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHHHH-HHHHHHhH
Confidence 5789999999999999999987654322 899999999988888999888888887 59999999
Q ss_pred HHHHhh---CCCCCEEEEecCcchHHHHHHHHHHhc----CCCCeEEEEcCCCCccccCC--------------------
Q 019047 253 EIWEDT---LGCVDIFVAAIGTGGTITGTGRFLKMM----NKEIKVVGVEPAERSVISGE-------------------- 305 (347)
Q Consensus 253 Ei~~ql---~~~~D~vv~pvG~Gg~~~Gi~~~~k~~----~~~~~vigVep~~~~~~~g~-------------------- 305 (347)
|..+|+ +..||++|.|||+|+|++|+...|-.. ....++|+|||..|+.++.+
T Consensus 243 EakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyT 322 (432)
T COG1350 243 EAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYT 322 (432)
T ss_pred HHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhc
Confidence 997776 458999999999999999999755432 22389999999999888752
Q ss_pred -CCCCCchhc-----------------cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 -NAGYVPSIL-----------------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 -~~~~~p~~l-----------------~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+++|..+ ...++-+++.++++|+++|++.|++.|||+--|
T Consensus 323 lGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAP 382 (432)
T COG1350 323 LGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAP 382 (432)
T ss_pred cCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCC
Confidence 224444432 345566899999999999999999999998654
No 63
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.8e-45 Score=379.06 Aligned_cols=284 Identities=19% Similarity=0.215 Sum_probs=228.4
Q ss_pred cccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhhh----hhccC-CCceeeccccccC----CC--CeEEEEeCC
Q 019047 59 SAKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV----TQLIG-RTPMVYLNKVTEG----CV--GNVAAKLES 127 (347)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~-~TPLv~~~~l~~~----~g--~~Iy~K~E~ 127 (347)
..+...+.....|+...+...||.+.|......+....++ ..++| +|||+++++|++. +| ++||+|+|+
T Consensus 276 ~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~ 355 (695)
T PRK13802 276 GPYWGQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKRED 355 (695)
T ss_pred CCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEcc
Confidence 3455668888888888889999999999877776544443 34677 9999999998753 44 799999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHhcCCE
Q 019047 128 MEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TNLERRILLRAFGAE 204 (347)
Q Consensus 128 ~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~---~~~~~~~~l~~~GA~ 204 (347)
+|||||||+|++.+++..+++.|+ .++|+++|+||||+|+|++|+.+|++|+||||+. .+..|+.+|+.|||+
T Consensus 356 lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAe 431 (695)
T PRK13802 356 LNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAE 431 (695)
T ss_pred CCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCE
Confidence 999999999999999999999997 4678999999999999999999999999999985 467899999999999
Q ss_pred EEEECC-CCChHHHHHHHHH-HHHcCCC-ceecCCCCCh----HHHHHHHHHHHHHHHHhhCC-----CCCEEEEecCcc
Q 019047 205 IILTDP-EKGLRGALDKAEE-IVLNTPN-AYMFQQFDNM----ANLKIHFDSTGPEIWEDTLG-----CVDIFVAAIGTG 272 (347)
Q Consensus 205 V~~~~~-~~~~~~a~~~a~~-~a~~~~~-~~~~~~~~n~----~~~~~g~~ti~~Ei~~ql~~-----~~D~vv~pvG~G 272 (347)
|+.++. +.+++++++++.+ ++++.++ .|++.++.|+ .++..||+|+|.||++|+.+ .||+||+|||+|
T Consensus 432 Vi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgG 511 (695)
T PRK13802 432 VVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGG 511 (695)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCch
Confidence 999984 3467888877744 6655443 4667777554 34557999999999999942 699999999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCC-------C------------------------CCc
Q 019047 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENA-------G------------------------YVP 311 (347)
Q Consensus 273 g~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~-------~------------------------~~p 311 (347)
||++|++.+|++ .++++||||||.++....| +.+ + ..|
T Consensus 512 g~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp 590 (695)
T PRK13802 512 SNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGP 590 (695)
T ss_pred HHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCc
Confidence 999999999976 6889999999998743322 010 1 111
Q ss_pred hhccccccCeE--EEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEV--IKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~--v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..-..+.++++ ++|+|+|+++|++.|++.|||++||
T Consensus 591 ~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~ 628 (695)
T PRK13802 591 EHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAI 628 (695)
T ss_pred hhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccc
Confidence 11112224444 9999999999999999999999986
No 64
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.2e-45 Score=356.43 Aligned_cols=253 Identities=20% Similarity=0.137 Sum_probs=215.3
Q ss_pred HhccCCCCchhhhhhhccCCCceeeccccccCCCC-eEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeC
Q 019047 85 EGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPT 163 (347)
Q Consensus 85 ~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~-~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~as 163 (347)
|++++|+....+.+...+++|||++++++.+.+|. +||+|+|++|||||||||++.+++.++.+.|. ..|+++|
T Consensus 4 ~~~~lp~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aS 78 (328)
T TIGR00260 4 YREFLPVTPEKDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCAS 78 (328)
T ss_pred chhhcCCCChhhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeC
Confidence 89999998766778899999999999999988887 99999999999999999999999999999885 5699999
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCC--h
Q 019047 164 TGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDN--M 240 (347)
Q Consensus 164 sGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n--~ 240 (347)
+||||.|+|++|+.+|++|+||||++ +++.|+.+++.+||+|+.+++ +++++.+.+.+++++. +.++.++ .| +
T Consensus 79 sGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~n~~~ 154 (328)
T TIGR00260 79 TGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNS-VNSIP 154 (328)
T ss_pred CcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-Ceeeccc-CCCCC
Confidence 99999999999999999999999998 899999999999999999986 4688888899888875 4555554 44 6
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcC-C----CCeEEEEcCCCCc-cc----cCCCC--
Q 019047 241 ANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN-K----EIKVVGVEPAERS-VI----SGENA-- 307 (347)
Q Consensus 241 ~~~~~g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~-~----~~~vigVep~~~~-~~----~g~~~-- 307 (347)
.++ .||.|+++||++|+++ .+|+||+|+|+||+++|++.+|++.. . .+++++|||.+++ .. .++..
T Consensus 155 ~~~-~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~ 233 (328)
T TIGR00260 155 YRL-EGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEP 233 (328)
T ss_pred eEe-eeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCc
Confidence 665 5999999999999975 79999999999999999999999741 1 3499999999873 22 12110
Q ss_pred ----CC--------Cch------hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 308 ----GY--------VPS------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 308 ----~~--------~p~------~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. .|. .+.++.+|+++.|+|+|+++++++|++++||++||
T Consensus 234 ~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p 291 (328)
T TIGR00260 234 IEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEP 291 (328)
T ss_pred CCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECc
Confidence 00 121 22346789999999999999999999999999997
No 65
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=3.4e-44 Score=353.19 Aligned_cols=278 Identities=19% Similarity=0.211 Sum_probs=211.5
Q ss_pred CCCCCCCcccchhhHHHHHHHhccCCCCchhhh----hhhcc-CCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHH
Q 019047 65 AASSSSSSLYATSTREIEKEEGNDFHGVNIAED----VTQLI-GRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRI 138 (347)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~-~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rg 138 (347)
+..+..|+.......++.+.|...+-..+...+ +..+. ++|||+++++|++.+| ++||+|+|++|||||||+|+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~ 85 (385)
T TIGR00263 6 FGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINN 85 (385)
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHH
Confidence 344445555566667777777665544432222 23334 5899999999999887 79999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCH--HHHHHHHhcCCEEEEECCC-CCh
Q 019047 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNL--ERRILLRAFGAEIILTDPE-KGL 214 (347)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~--~~~~~l~~~GA~V~~~~~~-~~~ 214 (347)
+..++..+++.|. +.+|+++|+||||+|+|++|+.+|++|+||||+. .+. .++.+|+.+||+|+.++.. .++
T Consensus 86 a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~ 161 (385)
T TIGR00263 86 ALGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTL 161 (385)
T ss_pred HHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCH
Confidence 9999999998885 4556789999999999999999999999999985 443 5688999999999999753 346
Q ss_pred HHHHHHHH-HHHHcCCCceec-CCCCC----hHHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHHHHHHh
Q 019047 215 RGALDKAE-EIVLNTPNAYMF-QQFDN----MANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKM 284 (347)
Q Consensus 215 ~~a~~~a~-~~a~~~~~~~~~-~~~~n----~~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~~~~k~ 284 (347)
+++++++. +++++.++.+|+ .++.| +.++..||+|+|.||++|+. ..||+||+|+|+||+++|++.++.+
T Consensus 162 ~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~ 241 (385)
T TIGR00263 162 KDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID 241 (385)
T ss_pred HHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh
Confidence 77765554 445554456565 34432 34555799999999999983 2589999999999999999988855
Q ss_pred cCCCCeEEEEcCCCCc---------cccCCC------------------------------CCCCc--hhccccccCeEE
Q 019047 285 MNKEIKVVGVEPAERS---------VISGEN------------------------------AGYVP--SILDVQLLDEVI 323 (347)
Q Consensus 285 ~~~~~~vigVep~~~~---------~~~g~~------------------------------~~~~p--~~l~~~~vd~~v 323 (347)
.++++||||||.++. +..|.. ++..| +.+....+|+++
T Consensus 242 -~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v 320 (385)
T TIGR00263 242 -DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYE 320 (385)
T ss_pred -CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEE
Confidence 689999999998742 222210 01111 123345578899
Q ss_pred EeCHHHHHHHHHHHHHhcCccccC
Q 019047 324 KVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 324 ~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+|+|+++++++|++.|||++||
T Consensus 321 ~Vsd~e~~~a~~~la~~egi~~~~ 344 (385)
T TIGR00263 321 AITDDEALEAFKLLSRNEGIIPAL 344 (385)
T ss_pred EECHHHHHHHHHHHHHhcCCeech
Confidence 999999999999999999999986
No 66
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=4.9e-44 Score=350.02 Aligned_cols=254 Identities=20% Similarity=0.226 Sum_probs=200.6
Q ss_pred CCCCchhhhhhh--ccCCCceeeccccccCC-CCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCC
Q 019047 89 FHGVNIAEDVTQ--LIGRTPMVYLNKVTEGC-VGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTG 165 (347)
Q Consensus 89 ~~~~~~~~~v~~--~~~~TPLv~~~~l~~~~-g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assG 165 (347)
.++++..+.+.. ...+|||+++++|++.+ +++||+|+|++|||||||+|++..++..+.++|. ..+|+++|+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssG 92 (365)
T cd06446 17 PDFPEELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAG 92 (365)
T ss_pred cccHHHHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCch
Confidence 455666666666 34699999999999887 5799999999999999999999999999999886 3455557999
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHhcCCEEEEECCCC-ChHHHHHHHHHHHHcC-CC-ceecCCCC-
Q 019047 166 NTGLGIAFVAAVKGYKLIVTMPASTN---LERRILLRAFGAEIILTDPEK-GLRGALDKAEEIVLNT-PN-AYMFQQFD- 238 (347)
Q Consensus 166 N~g~AlA~aa~~~Gl~~~I~vp~~~~---~~~~~~l~~~GA~V~~~~~~~-~~~~a~~~a~~~a~~~-~~-~~~~~~~~- 238 (347)
|||+|+|++|+.+|++|+||||...+ ..++.+|+.+||+|+.++... ++++++.++.+...+. ++ .|++.++.
T Consensus 93 N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~ 172 (365)
T cd06446 93 QHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVG 172 (365)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccC
Confidence 99999999999999999999998633 367889999999999998542 4567765565543332 23 44333321
Q ss_pred ---ChHHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCC------
Q 019047 239 ---NMANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE------ 305 (347)
Q Consensus 239 ---n~~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~------ 305 (347)
++.+++.||+|+++||++|+. ..||+||+|+|+||+++|++.++++ .++++||||||.+++.+.+.
T Consensus 173 ~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~ 251 (365)
T cd06446 173 PHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLF 251 (365)
T ss_pred CCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeecc
Confidence 234566799999999999995 3699999999999999999998877 45899999999987654321
Q ss_pred --CC-------------------------------CCCc--hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 --NA-------------------------------GYVP--SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 --~~-------------------------------~~~p--~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. ...+ +.+..+.+|+++.|+|+|+++++++|+++|||++||
T Consensus 252 ~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~ep 328 (365)
T cd06446 252 GGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPAL 328 (365)
T ss_pred CCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCc
Confidence 00 0011 113456689999999999999999999999999997
No 67
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=3.3e-44 Score=351.62 Aligned_cols=243 Identities=19% Similarity=0.177 Sum_probs=203.3
Q ss_pred ccCCCceeeccccccCCC-CeEEEEeCCCCC-CCchhHHHHHHHHHHHHHc----------------CCCC--CCCeEEE
Q 019047 101 LIGRTPMVYLNKVTEGCV-GNVAAKLESMEP-CRSVKDRIGYSMITDAEES----------------GDIT--PGKTVLV 160 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~p-tGSfK~Rga~~~~~~a~~~----------------G~~~--~g~~~vv 160 (347)
.+.+|||++++.|++.+| .+||+|+|++|+ +||||+||+++.+..+.+. +.+. .+...|+
T Consensus 19 ~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 98 (376)
T TIGR01747 19 GYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFA 98 (376)
T ss_pred CCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEE
Confidence 346999999999999999 599999999985 8999999999999887653 1111 1245799
Q ss_pred EeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecC-----
Q 019047 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ----- 235 (347)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~----- 235 (347)
++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.+++ +++++.+.+.++++++ ++++++
T Consensus 99 ~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~ 175 (376)
T TIGR01747 99 TATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVVVQDTAWE 175 (376)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEEecccccc
Confidence 99999999999999999999999999999999999999999999999986 4688999999988876 678776
Q ss_pred CCCC--hHHHHHHHHHHHHHHHHhhCC----CCCEEEEecCcchHHHHHHHHHHhcCC--CCeEEEEcCCCCccc-----
Q 019047 236 QFDN--MANLKIHFDSTGPEIWEDTLG----CVDIFVAAIGTGGTITGTGRFLKMMNK--EIKVVGVEPAERSVI----- 302 (347)
Q Consensus 236 ~~~n--~~~~~~g~~ti~~Ei~~ql~~----~~D~vv~pvG~Gg~~~Gi~~~~k~~~~--~~~vigVep~~~~~~----- 302 (347)
+|+| ++. +.||+|+++||++|+.+ .||+||+|+|+||+++|++.++++..+ .++||+|||++++.+
T Consensus 176 ~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~ 254 (376)
T TIGR01747 176 GYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAV 254 (376)
T ss_pred ccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHH
Confidence 5665 444 46999999999999962 799999999999999999999987643 379999999987432
Q ss_pred c--CC------------------CCCCCchhccccccCeEEEeCHHHHHHHHHHHHHhc----CccccC
Q 019047 303 S--GE------------------NAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEE----GLLVMC 347 (347)
Q Consensus 303 ~--g~------------------~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~e----GI~~G~ 347 (347)
. |. .++..+|.+.++.++.+++|+|+|+.+|+++|++.. +|+++|
T Consensus 255 ~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~ep 323 (376)
T TIGR01747 255 KKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGE 323 (376)
T ss_pred hcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeC
Confidence 2 20 112245566778899999999999999999999855 498887
No 68
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.1e-43 Score=350.11 Aligned_cols=244 Identities=21% Similarity=0.191 Sum_probs=200.2
Q ss_pred ccCCCceeeccccccCCC-CeEEEEeCCCCC-CCchhHHHHHHHHHHHH--HcCCC--------------C--CCCeEEE
Q 019047 101 LIGRTPMVYLNKVTEGCV-GNVAAKLESMEP-CRSVKDRIGYSMITDAE--ESGDI--------------T--PGKTVLV 160 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~p-tGSfK~Rga~~~~~~a~--~~G~~--------------~--~g~~~vv 160 (347)
.+.+|||++++.|++.+| ++||+|+|++|+ |||||+||+.+.+..+. +.|.. . ....+||
T Consensus 38 ~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv 117 (396)
T TIGR03528 38 GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFV 117 (396)
T ss_pred CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEE
Confidence 446999999999999999 699999999885 99999999999999863 33310 0 0123799
Q ss_pred EeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecC-----
Q 019047 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ----- 235 (347)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~----- 235 (347)
++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.+||+|+.+++ +++++.+.+.++++++ ++++++
T Consensus 118 ~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~~ 194 (396)
T TIGR03528 118 TATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAWE 194 (396)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeecccccc
Confidence 99999999999999999999999999999999999999999999999985 4688999999999886 778775
Q ss_pred CCCCh-HHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHHHHHHhc-CCC-CeEEEEcCCCCccc-----c
Q 019047 236 QFDNM-ANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKMM-NKE-IKVVGVEPAERSVI-----S 303 (347)
Q Consensus 236 ~~~n~-~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~~~~k~~-~~~-~~vigVep~~~~~~-----~ 303 (347)
+|+|. ..++.||+|+++||++|++ +.||+||+|+|+||+++|++.++++. .+. ++||+|||++++.+ .
T Consensus 195 ~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~ 274 (396)
T TIGR03528 195 GYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIA 274 (396)
T ss_pred ccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHh
Confidence 67662 2233699999999999996 37999999999999999999988654 333 59999999987433 1
Q ss_pred --CC------------------CCCCCchhccccccCeEEEeCHHHHHHHHHHHHH----hcCccccC
Q 019047 304 --GE------------------NAGYVPSILDVQLLDEVIKVTNDEAVNMARRLAL----EEGLLVMC 347 (347)
Q Consensus 304 --g~------------------~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~----~eGI~~G~ 347 (347)
|. .++..++.+.++.+|+++.|+|+|+.+++++|++ +++++++|
T Consensus 275 ~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~ep 342 (396)
T TIGR03528 275 DDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGE 342 (396)
T ss_pred cCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecC
Confidence 20 0122334555678999999999999999999997 56888886
No 69
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=323.92 Aligned_cols=245 Identities=19% Similarity=0.332 Sum_probs=219.4
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.++++.+.+..||.+..+.|-+..|.+||||+|.+|-+|+||.|||.+.+..+..... .+.|++.|+||||.|+|+
T Consensus 15 A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHaqAlal 90 (323)
T KOG1251|consen 15 AHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHAQALAL 90 (323)
T ss_pred HHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHHHHHHH
Confidence 4567788888999999999999999999999999999999999999999998874333 356999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+..||+|+|+||++.+..|+..++.|||+|+.+++. .++.-+.|.++.++. +.+++++|+++..+ .||.|++.|
T Consensus 91 aAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqgTiA~E 166 (323)
T KOG1251|consen 91 AAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQGTIALE 166 (323)
T ss_pred HHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccchHHHH
Confidence 99999999999999999999999999999999999864 356667788899887 89999999999887 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCC-----ccccCC-----------------CCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAER-----SVISGE-----------------NAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~-----~~~~g~-----------------~~~~~p 311 (347)
++||. +..|.+|+|+|+||+++|++...+.+.|+++|++|||++. +.+.|. ..+...
T Consensus 167 lleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t 245 (323)
T KOG1251|consen 167 LLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLT 245 (323)
T ss_pred HHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccc
Confidence 99999 5899999999999999999999999999999999999764 344441 135678
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|++.++.+|++++|+|+|+.++++.++++..+.+.|
T Consensus 246 ~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEP 281 (323)
T KOG1251|consen 246 WPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEP 281 (323)
T ss_pred hHHHHHHhhhheeecHHHHHHHHHHHHHHHheeecc
Confidence 899999999999999999999999999998888776
No 70
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.2e-43 Score=362.57 Aligned_cols=284 Identities=18% Similarity=0.190 Sum_probs=225.9
Q ss_pred cccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhhh---hhcc--CCCceeeccccccCCCCeEEEEeCCCCCCCc
Q 019047 59 SAKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV---TQLI--GRTPMVYLNKVTEGCVGNVAAKLESMEPCRS 133 (347)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~--~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGS 133 (347)
..+...+.....|+...+...||.+.|......++...++ ...+ ++|||+++++|++.+|++||+|+|++|||||
T Consensus 221 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS 300 (610)
T PRK13803 221 AGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGS 300 (610)
T ss_pred CCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCccc
Confidence 3455668888888888999999999999877776544443 3333 5899999999999888999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHhcCCEEEEECC
Q 019047 134 VKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEIILTDP 210 (347)
Q Consensus 134 fK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~---~~~~~~~l~~~GA~V~~~~~ 210 (347)
||+|++..++..|++.|+ +++++++|+||||+|+|++|+.+|++|+||||+.. ...++.+|+.+||+|+.++.
T Consensus 301 ~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~ 376 (610)
T PRK13803 301 HKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLS 376 (610)
T ss_pred HHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECC
Confidence 999999999999999885 46677899999999999999999999999999763 35678899999999999984
Q ss_pred -CCChHHHHHHHHHHH-HcCCCceecCCCC-C----hHHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHH
Q 019047 211 -EKGLRGALDKAEEIV-LNTPNAYMFQQFD-N----MANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTG 279 (347)
Q Consensus 211 -~~~~~~a~~~a~~~a-~~~~~~~~~~~~~-n----~~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~ 279 (347)
..++++++.++.+.. .+.++.+|+.++. + +.++..||+|||.||++|+. ..||+||+|+|+|||++|++
T Consensus 377 ~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~ 456 (610)
T PRK13803 377 GSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIF 456 (610)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHH
Confidence 345778877766643 4445676764332 1 34444589999999999984 36999999999999999999
Q ss_pred HHHHhcCCCCeEEEEcCCCCcc--------ccCCC-------------------------------CCCCch--hccccc
Q 019047 280 RFLKMMNKEIKVVGVEPAERSV--------ISGEN-------------------------------AGYVPS--ILDVQL 318 (347)
Q Consensus 280 ~~~k~~~~~~~vigVep~~~~~--------~~g~~-------------------------------~~~~p~--~l~~~~ 318 (347)
.+|++ .++++||||||.++.. +.++. ++..|. .+....
T Consensus 457 ~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~ 535 (610)
T PRK13803 457 YHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETG 535 (610)
T ss_pred HHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcC
Confidence 99965 7899999999987522 11110 111121 122344
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 319 LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 319 vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++++.|+|+|+++|+++|++.|||++|+
T Consensus 536 ~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ 564 (610)
T PRK13803 536 RAIYTSVTDEEALDAFKLLAKLEGIIPAL 564 (610)
T ss_pred CeEEEEECHHHHHHHHHHHHHHcCCccCc
Confidence 56899999999999999999999999885
No 71
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-43 Score=321.04 Aligned_cols=253 Identities=34% Similarity=0.578 Sum_probs=216.9
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
+...+...+|+|||++++.|++.+||+||.|.|.+||+||.|||.|++++..|+|.|++.+|. .|+|.|+|++|.++|.
T Consensus 39 ~~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~ 117 (391)
T KOG1481|consen 39 IVSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGG-TVVEGTAGSTGISLAH 117 (391)
T ss_pred ccchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCc-eEEecCCCccchhHHH
Confidence 334677889999999999999999999999999999999999999999999999999999995 5899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCC--ChHHHHHHHHHHHHcCCC------ceecCCCCChHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPN------AYMFQQFDNMANLKI 245 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~--~~~~a~~~a~~~a~~~~~------~~~~~~~~n~~~~~~ 245 (347)
.|..+|++|+|+||++++.+|.+.++.+||+|+.+++.. +-..-+..|++.+.+.++ .+|.+||+|..||..
T Consensus 118 v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~a 197 (391)
T KOG1481|consen 118 VARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLA 197 (391)
T ss_pred hhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHH
Confidence 999999999999999999999999999999999987522 112334445554444322 366799999999999
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCC-CeEEEEcCCCCccccC--------------------
Q 019047 246 HFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE-IKVVGVEPAERSVISG-------------------- 304 (347)
Q Consensus 246 g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~-~~vigVep~~~~~~~g-------------------- 304 (347)
||.|+|+|||.|..+++|.+++.+|+||+++|+.+++|++.+. +.++-++|-++.+...
T Consensus 198 HyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q 277 (391)
T KOG1481|consen 198 HYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQ 277 (391)
T ss_pred HhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCC
Confidence 9999999999999999999999999999999999999998765 8899999988744322
Q ss_pred -------CCCCCCc--hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 -------ENAGYVP--SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 -------~~~~~~p--~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..-..+. +....+++|+.+.|+|++++++.++|..++|+++|.
T Consensus 278 ~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGs 329 (391)
T KOG1481|consen 278 VDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGS 329 (391)
T ss_pred cchhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecc
Confidence 0111122 234467799999999999999999999999999984
No 72
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=1.6e-42 Score=341.86 Aligned_cols=254 Identities=16% Similarity=0.083 Sum_probs=208.0
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCC-eEEEEeCC-------CCCCCchhHHHHHHHHHHHHHcCC
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG-NVAAKLES-------MEPCRSVKDRIGYSMITDAEESGD 151 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~-~Iy~K~E~-------~~ptGSfK~Rga~~~~~~a~~~G~ 151 (347)
.+|+ |++++|+.+. ....+.|||+++++|++.+|. +||+|+|+ +|||||||||++.+++.++.+.|.
T Consensus 43 ~~wr-y~~~lP~~~~----~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~ 117 (398)
T TIGR03844 43 GIFR-YYDWLPVTGH----LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG 117 (398)
T ss_pred chhh-hHhhCCCCCC----CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC
Confidence 4776 8999998653 456778999999999999997 99996666 899999999999999999999884
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCc
Q 019047 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231 (347)
Q Consensus 152 ~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~ 231 (347)
+.|+++|+||||.|+|++|+.+|++|+||||++....+...++.+||+|+.+++ +++++++.+.++++++ ++
T Consensus 118 -----~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~ 189 (398)
T TIGR03844 118 -----KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GF 189 (398)
T ss_pred -----CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-Cc
Confidence 669999999999999999999999999999998644333335788999999986 4789999999998875 66
Q ss_pred eecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhc-------CCCCeEEEEcCCCCccc--
Q 019047 232 YMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMM-------NKEIKVVGVEPAERSVI-- 302 (347)
Q Consensus 232 ~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigVep~~~~~~-- 302 (347)
+..++++|+..+ .|++|+++||++|++..||+||+|+|+|+++.|++.+++++ ..-+++++|||++|+.+
T Consensus 190 ~~~~~~~~p~~i-eG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~ 268 (398)
T TIGR03844 190 VPEGGARNVARR-DGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVN 268 (398)
T ss_pred cccCCCCCHHHH-hhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHH
Confidence 545667788876 69999999999999755999999999999899999888773 23479999999988533
Q ss_pred ---cCCC--------C-------CC--------Cc--------hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 303 ---SGEN--------A-------GY--------VP--------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 303 ---~g~~--------~-------~~--------~p--------~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|.. + .. .| ....++..++++.|+|+|+.+|++.|++++||++.|
T Consensus 269 a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEp 347 (398)
T TIGR03844 269 AWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILP 347 (398)
T ss_pred HHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccc
Confidence 2311 0 00 01 122346678999999999999999999999999876
No 73
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=2e-42 Score=329.51 Aligned_cols=238 Identities=33% Similarity=0.496 Sum_probs=194.3
Q ss_pred hhhccCCCceeecc--ccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 98 VTQLIGRTPMVYLN--KVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 98 v~~~~~~TPLv~~~--~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
|++++++|||++++ .+.+..+++||+|+|++|||||||+|++.+++.+++++|. +.|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 56789999999976 4445567899999999999999999999999999999874 5689999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHc-------CCCceecCCCCChHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLN-------TPNAYMFQQFDNMANLKIHFD 248 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~-------~~~~~~~~~~~n~~~~~~g~~ 248 (347)
+.+|++|+||||++++..++.+|+.+||+|+.++.+ ++++.+.+.+++++ .++. +++| ++.+...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 999999999999999999999999999999998853 34555555555442 1122 5667 4445557999
Q ss_pred HHHHHHHHhhCCCCCE--EEEecCcchHHHHHHHHHHh--cCCCCeEEEEcCCCCcccc-----CC-------------C
Q 019047 249 STGPEIWEDTLGCVDI--FVAAIGTGGTITGTGRFLKM--MNKEIKVVGVEPAERSVIS-----GE-------------N 306 (347)
Q Consensus 249 ti~~Ei~~ql~~~~D~--vv~pvG~Gg~~~Gi~~~~k~--~~~~~~vigVep~~~~~~~-----g~-------------~ 306 (347)
+++.||.+|++ .||. ||+|+|+||+++|++.+++. . ++++||+|||..++.+. |. .
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999997 7766 99999999999999999999 7 89999999998874432 21 1
Q ss_pred C-----CCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 A-----GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ~-----~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
. +...+.+.++.+++++.|+|+|+.+++++|+++|||++||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p 274 (306)
T PF00291_consen 229 VPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEP 274 (306)
T ss_dssp SSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-H
T ss_pred CCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcH
Confidence 1 1122345566778889999999999999999999999986
No 74
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=5.4e-42 Score=331.64 Aligned_cols=246 Identities=21% Similarity=0.195 Sum_probs=202.2
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCC--CchhHHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChhHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLVEPT--TGNTGLGI 171 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~pt--GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~as--sGN~g~Al 171 (347)
.++...+++|||++++.|++.+|++||+|+|++||+ ||||+|++.+++.++++.|. +.||++| +||||.|+
T Consensus 7 ~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~al 81 (331)
T PRK03910 7 PRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQT 81 (331)
T ss_pred CCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHHH
Confidence 457789999999999999988889999999999997 69999999999999999885 4467764 48999999
Q ss_pred HHHHHHcCCcEEEEeCCCCCH--------HHHHHHHhcCCEEEEECCCCChHH-HHHHHHHHHHcCCCce-ecCCCCChH
Q 019047 172 AFVAAVKGYKLIVTMPASTNL--------ERRILLRAFGAEIILTDPEKGLRG-ALDKAEEIVLNTPNAY-MFQQFDNMA 241 (347)
Q Consensus 172 A~aa~~~Gl~~~I~vp~~~~~--------~~~~~l~~~GA~V~~~~~~~~~~~-a~~~a~~~a~~~~~~~-~~~~~~n~~ 241 (347)
|++|+.+|++|+||||+..+. .++..|+.+||+|+.++.+.+..+ +...+.++.++.+..+ +..++.|+.
T Consensus 82 A~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 161 (331)
T PRK03910 82 AAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNAL 161 (331)
T ss_pred HHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCch
Confidence 999999999999999998775 456899999999999986422223 3345555666543333 456778888
Q ss_pred HHHHHHHHHHHHHHHhhCC---CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc---------------
Q 019047 242 NLKIHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS--------------- 303 (347)
Q Consensus 242 ~~~~g~~ti~~Ei~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~--------------- 303 (347)
+. .||.+++.||++|+++ .||+||+|+|+||+++|++.+||+.+++++||||||.+++...
T Consensus 162 ~~-~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~ 240 (331)
T PRK03910 162 GA-LGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELL 240 (331)
T ss_pred hH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHc
Confidence 87 4889999999999963 6999999999999999999999999999999999998764321
Q ss_pred CCC--CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 304 GEN--AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 304 g~~--~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|.. .....+.+.++.+|+.+.|+|+|+++++++|++++||++||
T Consensus 241 g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep 286 (331)
T PRK03910 241 GLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDP 286 (331)
T ss_pred CCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCcccc
Confidence 111 11222345677889999999999999999999999999997
No 75
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=6.8e-42 Score=327.67 Aligned_cols=237 Identities=22% Similarity=0.222 Sum_probs=195.5
Q ss_pred CceeeccccccCC--CCeEEEEeCCCCCC---CchhHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChhHHHHHHHHHH
Q 019047 105 TPMVYLNKVTEGC--VGNVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGLGIAFVAAV 177 (347)
Q Consensus 105 TPLv~~~~l~~~~--g~~Iy~K~E~~~pt---GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g~AlA~aa~~ 177 (347)
|||+++++|++.+ +++||+|+|++||+ ||||+|++.+++..++++|. +.|+++ |+||||.|||++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999999877 57999999999998 56799999999999999986 457887 589999999999999
Q ss_pred cCCcEEEEeCCCCC--------HHHHHHHHhcCCEEEEECCCCC--hHHHHHHHHHHHHcC-CCcee-cCCC-CChHHHH
Q 019047 178 KGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEKG--LRGALDKAEEIVLNT-PNAYM-FQQF-DNMANLK 244 (347)
Q Consensus 178 ~Gl~~~I~vp~~~~--------~~~~~~l~~~GA~V~~~~~~~~--~~~a~~~a~~~a~~~-~~~~~-~~~~-~n~~~~~ 244 (347)
+|++|+||||.+.+ ..|+.+|+.+||+|+.++.+.. ..++++++.+...+. +..++ .+++ +|+.++
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGG- 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccH-
Confidence 99999999999876 4689999999999999986431 223344444433333 22344 4554 488887
Q ss_pred HHHHHHHHHHHHhhCC---CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc---------------CCC
Q 019047 245 IHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS---------------GEN 306 (347)
Q Consensus 245 ~g~~ti~~Ei~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~---------------g~~ 306 (347)
.||.|++.||++|+.+ .||+||+|+|+||+++|++.++|+.+++++||+|||..+.... |..
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 5999999999999964 6999999999999999999999999999999999999874331 111
Q ss_pred CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+..++.+..+.+|+.+.|+|+|+++++++|++++||++||
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep 275 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDP 275 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCcccc
Confidence 22345566778899999999999999999999999999997
No 76
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=9.6e-42 Score=327.07 Aligned_cols=240 Identities=19% Similarity=0.162 Sum_probs=195.7
Q ss_pred ccCCCceeeccccccCCCCeEEEEeCCCCCC--CchhHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChhHHHHHHHHH
Q 019047 101 LIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGLGIAFVAA 176 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~pt--GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g~AlA~aa~ 176 (347)
...+|||+++++|++..|++||+|+|++||+ ||||+|++.+++.+++++|. +.|+++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 4468999999999988889999999999998 99999999999999999986 568887 55999999999999
Q ss_pred HcCCcEEEEeCCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH----cCC-CceecCCCCChHHHHHHHHHH
Q 019047 177 VKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL----NTP-NAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 177 ~~Gl~~~I~vp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~----~~~-~~~~~~~~~n~~~~~~g~~ti 250 (347)
.+|++|+||||.+. +..+..+++.+||+|+.++.. ++++..+.+.++++ +.+ .+++..++.|+.+++ |+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999865 455677789999999999852 23344444444433 322 234568888888874 77789
Q ss_pred HHHHHHhhCC--CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCc-c-c-----------cCCCCC-CCchhc
Q 019047 251 GPEIWEDTLG--CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS-V-I-----------SGENAG-YVPSIL 314 (347)
Q Consensus 251 ~~Ei~~ql~~--~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~-~-~-----------~g~~~~-~~p~~l 314 (347)
++||++|+++ .+|+||+|+|+||+++|++.+||+.+++++||||||..+. . . .+.... ...+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999964 7999999999999999999999999999999999986542 1 1 111111 234455
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 315 ~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++..+..+.|+|+|+++++++|++++||++||
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep 269 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILDP 269 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccCc
Confidence 567788899999999999999999999999987
No 77
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3.7e-41 Score=326.56 Aligned_cols=247 Identities=21% Similarity=0.166 Sum_probs=200.6
Q ss_pred hhhhhccCCCceeeccccccCCC--CeEEEEeCCCCCC---CchhHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChhH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCV--GNVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTG 168 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g--~~Iy~K~E~~~pt---GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g 168 (347)
.++.+.+++|||++++++++.+| .+||+|+|++||+ ||||+|.+.+++..++++|. ..|+++ |+||||
T Consensus 7 ~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~g 81 (337)
T PRK12390 7 PRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQSNHT 81 (337)
T ss_pred CccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCccHHH
Confidence 46778899999999999988877 7999999999987 78899999999999999996 456776 779999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHhcCCEEEEECCCC--ChHHHHHHHHHHHHcCCCcee-cCCC
Q 019047 169 LGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPNAYM-FQQF 237 (347)
Q Consensus 169 ~AlA~aa~~~Gl~~~I~vp~~~~--------~~~~~~l~~~GA~V~~~~~~~--~~~~a~~~a~~~a~~~~~~~~-~~~~ 237 (347)
+|+|++|+.+|++|+|||+..++ ..++.+++.+||+|+.++.++ .++++++++.+.+++..+..| +..+
T Consensus 82 ~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T PRK12390 82 RQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAG 161 (337)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCc
Confidence 99999999999999999877554 236779999999999998643 244677777777766434333 5444
Q ss_pred CChHH-HHHHHHHHHHHHHHh---hCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC---------
Q 019047 238 DNMAN-LKIHFDSTGPEIWED---TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG--------- 304 (347)
Q Consensus 238 ~n~~~-~~~g~~ti~~Ei~~q---l~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g--------- 304 (347)
.+.+. ...||.++++||++| +++++|+||+|+|+||+++|++.++|+.++++|||||||..++....
T Consensus 162 ~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~ 241 (337)
T PRK12390 162 ASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARN 241 (337)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHH
Confidence 33321 134899999999998 44579999999999999999999999999999999999988743321
Q ss_pred ----CCCC--C--CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 ----ENAG--Y--VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ----~~~~--~--~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
...+ . ..+.+..+.+|+.+.|+|+|+++++++|++++||+++|
T Consensus 242 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep 292 (337)
T PRK12390 242 TAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDP 292 (337)
T ss_pred HHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccc
Confidence 1111 1 12245667899999999999999999999999999987
No 78
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.9e-40 Score=321.64 Aligned_cols=247 Identities=22% Similarity=0.176 Sum_probs=202.1
Q ss_pred hhhhhhccCCCceeeccccccCCCC--eEEEEeCCCCCC---CchhHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChh
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVG--NVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNT 167 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~--~Iy~K~E~~~pt---GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~ 167 (347)
..++.+.+++|||+++++|++.+|. +||+|+|++||+ ||||+|.+.+++.+++++|. +.|+++ ++|||
T Consensus 5 ~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~ 79 (337)
T TIGR01274 5 FPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQ 79 (337)
T ss_pred CCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcchH
Confidence 3567889999999999999988764 999999999986 77799999999999999996 456766 66999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHhcCCEEEEECCCCC--hHHHHHHHHHHHHcCC-CceecCC
Q 019047 168 GLGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEKG--LRGALDKAEEIVLNTP-NAYMFQQ 236 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~I~vp~~~~--------~~~~~~l~~~GA~V~~~~~~~~--~~~a~~~a~~~a~~~~-~~~~~~~ 236 (347)
|+|+|++|+.+|++|+||||+..+ ..|+.+|+.+||+|+.++.+++ ..+++.++.+.+++.+ ..+++..
T Consensus 80 g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~ 159 (337)
T TIGR01274 80 TRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPA 159 (337)
T ss_pred HHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCC
Confidence 999999999999999999998643 5799999999999999986431 2356667776666653 3355555
Q ss_pred CC--ChHHHHHHHHHHHHHHHHhh---CCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC-------
Q 019047 237 FD--NMANLKIHFDSTGPEIWEDT---LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG------- 304 (347)
Q Consensus 237 ~~--n~~~~~~g~~ti~~Ei~~ql---~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g------- 304 (347)
+. ++... .|+.++++||.+|+ +.+||+||+|+|+||+++|++.++++..++++||||||.++.....
T Consensus 160 ~~~~~~~~~-~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~ 238 (337)
T TIGR01274 160 GCSDHPLGG-LGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIA 238 (337)
T ss_pred CCCCCccch-hHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHH
Confidence 43 34444 48999999999995 3479999999999999999999999999999999999998743311
Q ss_pred ------CC--CCCC--chhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 ------EN--AGYV--PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ------~~--~~~~--p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. .... .+.+..+.+++.+.|+|+|+++++++|+++|||+++|
T Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep 291 (337)
T TIGR01274 239 RNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDP 291 (337)
T ss_pred HHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCc
Confidence 11 1111 1356667789999999999999999999999999987
No 79
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-40 Score=304.70 Aligned_cols=279 Identities=19% Similarity=0.237 Sum_probs=224.1
Q ss_pred ccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhhh----hhcc-CCCceeeccccccCCCCeEEEEeCCCCCCCch
Q 019047 60 AKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV----TQLI-GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSV 134 (347)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~-~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSf 134 (347)
.+...+.....|+...+...|+++.|......++...++ ..+. +||||+.+++|++.+|++||+|+|++|+||+|
T Consensus 7 g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAH 86 (396)
T COG0133 7 GYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAH 86 (396)
T ss_pred CcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchh
Confidence 344557777788888899999999998766665544443 2234 45999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-C--CHHHHHHHHhcCCEEEEEC-C
Q 019047 135 KDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-T--NLERRILLRAFGAEIILTD-P 210 (347)
Q Consensus 135 K~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~--~~~~~~~l~~~GA~V~~~~-~ 210 (347)
|++.+..++..|++.|+ ++++.++++|+||.|.|.+|++||++|+|||... + ...++.+|+.+||+|+.+. +
T Consensus 87 KiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sG 162 (396)
T COG0133 87 KINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSG 162 (396)
T ss_pred hHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccC
Confidence 99999999999999998 7899999999999999999999999999999963 2 3445778999999999886 5
Q ss_pred CCChHHHHHHHHHHHH-cCCCceec-------CCCCChHHHHHHHHHHHHHHHHhh----CCCCCEEEEecCcchHHHHH
Q 019047 211 EKGLRGALDKAEEIVL-NTPNAYMF-------QQFDNMANLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTITGT 278 (347)
Q Consensus 211 ~~~~~~a~~~a~~~a~-~~~~~~~~-------~~~~n~~~~~~g~~ti~~Ei~~ql----~~~~D~vv~pvG~Gg~~~Gi 278 (347)
+.+++||+.+|.+.+. +..+.+|+ ++| |..+...|+.||.|..+|+ +.-||.||.|||+|||+.|+
T Consensus 163 s~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPy--P~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~ 240 (396)
T COG0133 163 SGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPY--PTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGI 240 (396)
T ss_pred CchHHHHHHHHHHHHHhccccceEEEeeccCCCCc--hHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhh
Confidence 6689999999977554 44566776 444 5555668999999999986 34699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEcCCCCccccC---------------------------------------CCCCCCchhcc--cc
Q 019047 279 GRFLKMMNKEIKVVGVEPAERSVISG---------------------------------------ENAGYVPSILD--VQ 317 (347)
Q Consensus 279 ~~~~k~~~~~~~vigVep~~~~~~~g---------------------------------------~~~~~~p~~l~--~~ 317 (347)
...|.. .+++++||||+.+....++ ..|+..|..-+ ..
T Consensus 241 F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~ 319 (396)
T COG0133 241 FHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDI 319 (396)
T ss_pred cccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhc
Confidence 988765 3689999999987533332 11233333222 22
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCccc
Q 019047 318 LLDEVIKVTNDEAVNMARRLALEEGLLV 345 (347)
Q Consensus 318 ~vd~~v~Vsd~ea~~a~~~La~~eGI~~ 345 (347)
.--+.+.|+|+||++|.+.|.+.|||+-
T Consensus 320 gRa~y~~itD~EAl~af~~L~r~EGIIP 347 (396)
T COG0133 320 GRAEYVSITDEEALEAFQLLSRLEGIIP 347 (396)
T ss_pred CceeEEecChHHHHHHHHHHHHhcCcch
Confidence 3346899999999999999999999973
No 80
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-40 Score=307.27 Aligned_cols=292 Identities=21% Similarity=0.179 Sum_probs=224.0
Q ss_pred cccccccccccccccC-----CCCCCCCcccchhhHHHHHHHhc---cCCCCchhhhhh-hccCCCceeeccccccCC--
Q 019047 49 TRRRILPIVASAKAGA-----AASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVT-QLIGRTPMVYLNKVTEGC-- 117 (347)
Q Consensus 49 ~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~-~~~~~TPLv~~~~l~~~~-- 117 (347)
..|+++..++++++.| +.....|+....-..||+++|.. ..++.+....++ -.+++|||+++++|.+.+
T Consensus 58 ~~~~~l~~d~~~~~~P~r~gkfgg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~y~gRpspL~~AkRLte~~q~ 137 (477)
T KOG1395|consen 58 PQWYNLVADLSVKPPPPRFGKFGGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYKYLGRPSPLIRAKRLTEHCQT 137 (477)
T ss_pred HHHHhccCchhhcCCCccccccCCccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHcCCCchhHHHHHHHHHhCC
Confidence 4899988888777766 45555555566655699999966 344445555566 456789999999999955
Q ss_pred CCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC---CCHHH
Q 019047 118 VGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TNLER 194 (347)
Q Consensus 118 g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~---~~~~~ 194 (347)
|++||+|+|++||+||||++.|..+++.|++.|+ +++|.++++|+||.|+|.+|++||++|+|||..+ ..+.+
T Consensus 138 ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqaln 213 (477)
T KOG1395|consen 138 GARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALN 213 (477)
T ss_pred CCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHH
Confidence 6899999999999999999999999999999998 7889999999999999999999999999999974 46678
Q ss_pred HHHHHhcCCEEEEECC-CCChHHHHHHHHHHHHcC-CCceecC-----CCCChHHHHHHHHHHHHHHHHhh----CCCCC
Q 019047 195 RILLRAFGAEIILTDP-EKGLRGALDKAEEIVLNT-PNAYMFQ-----QFDNMANLKIHFDSTGPEIWEDT----LGCVD 263 (347)
Q Consensus 195 ~~~l~~~GA~V~~~~~-~~~~~~a~~~a~~~a~~~-~~~~~~~-----~~~n~~~~~~g~~ti~~Ei~~ql----~~~~D 263 (347)
+-+||.+||+|+.+.+ ..+++++..++.++.-.+ .-.+|+. ++--+..+...+.+|+-|-..|. ++.||
T Consensus 214 vfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD 293 (477)
T KOG1395|consen 214 VFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPD 293 (477)
T ss_pred HHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCC
Confidence 8899999999999874 446788888887765432 1234432 22224444457889999987775 45799
Q ss_pred EEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC--------C------------------------------
Q 019047 264 IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG--------E------------------------------ 305 (347)
Q Consensus 264 ~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g--------~------------------------------ 305 (347)
.||.|+|+|+|.+|+...|... ..++.|+||..+...-++ +
T Consensus 294 ~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGL 372 (477)
T KOG1395|consen 294 AVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGL 372 (477)
T ss_pred eEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCC
Confidence 9999999999999999988764 468899998765322111 0
Q ss_pred -CCCCCch--hccccccCeEEEeCHHHHHHHHHHHHHhcCccc
Q 019047 306 -NAGYVPS--ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345 (347)
Q Consensus 306 -~~~~~p~--~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~ 345 (347)
.++..|. .+...+..++++|+|.|++++.++|++.|||+-
T Consensus 373 dYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIP 415 (477)
T KOG1395|consen 373 DYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIP 415 (477)
T ss_pred CCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhccccc
Confidence 1122221 122233457999999999999999999999974
No 81
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=5.3e-39 Score=310.50 Aligned_cols=244 Identities=21% Similarity=0.242 Sum_probs=193.8
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCC--CchhHHHHHHHHHHHHHcCCCCCCCeEEE--EeCCChhHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLV--EPTTGNTGLGI 171 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~pt--GSfK~Rga~~~~~~a~~~G~~~~g~~~vv--~assGN~g~Al 171 (347)
+++.+..++|||++++++++..|++||+|+|++||+ ||||+|++.+++..+.++|. ++ |+ ++|+||||+|+
T Consensus 13 ~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~----~~-vv~~~~ssGN~g~al 87 (329)
T PRK14045 13 PRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA----DV-VITVGAVHSNHAFVT 87 (329)
T ss_pred CCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC----CE-EEEeCccHHHHHHHH
Confidence 567888899999999999987889999999999986 89999999999999999986 33 44 68999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCCHH-HHHHHHhcCCEEEEECCCCC---hHHHHHHHHHHHHcCCCcee-cCCCCChHHHHHH
Q 019047 172 AFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDPEKG---LRGALDKAEEIVLNTPNAYM-FQQFDNMANLKIH 246 (347)
Q Consensus 172 A~aa~~~Gl~~~I~vp~~~~~~-~~~~l~~~GA~V~~~~~~~~---~~~a~~~a~~~a~~~~~~~~-~~~~~n~~~~~~g 246 (347)
|++|+.+|++|+||||.+.+.. +..+++.+||+|+.++...+ .+.+.+.+.+++++.+..++ ..++.|+.++. |
T Consensus 88 A~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~-g 166 (329)
T PRK14045 88 GLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTL-G 166 (329)
T ss_pred HHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH-H
Confidence 9999999999999999875443 55677999999998874222 23455666666665544555 46677888875 6
Q ss_pred HHHHHHHHHHhhC---CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCC-ccc--------------cCCCCC
Q 019047 247 FDSTGPEIWEDTL---GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAER-SVI--------------SGENAG 308 (347)
Q Consensus 247 ~~ti~~Ei~~ql~---~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~-~~~--------------~g~~~~ 308 (347)
+.+...||++|+. .++|+||+|+|+||+++|++.++|..+++++||||+|... ..+ .|...+
T Consensus 167 ~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 246 (329)
T PRK14045 167 YVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVK 246 (329)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5555559999996 3799999999999999999999999999999999999762 111 111222
Q ss_pred C-CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 309 Y-VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 309 ~-~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
. .+. +.+..+|++..++ +|++++++.|+++|||++||
T Consensus 247 ~~~~~-~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldp 284 (329)
T PRK14045 247 VQEPE-LYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDP 284 (329)
T ss_pred ccceE-ecccccCCCCCCC-HHHHHHHHHHHHhhCCCCcc
Confidence 2 222 2333458888888 69999999999999999997
No 82
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-36 Score=295.46 Aligned_cols=257 Identities=21% Similarity=0.122 Sum_probs=216.3
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCC---eEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCC
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG---NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK 156 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~---~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~ 156 (347)
.+|+ |.+++|.. ....+....+.||+++.+++...+|. ++|+|.|+.|||||||||++..++..+.+.|.
T Consensus 54 ~~~~-~~~~lp~~-~~~~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~----- 126 (411)
T COG0498 54 LAWR-YLELLPVG-EIPAVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA----- 126 (411)
T ss_pred hHHH-HHHHCCCC-CcchhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----
Confidence 3444 88899876 45677899999999999888887773 59999999999999999999999999999984
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (347)
.+|+++|+||+|.|+|.++++.|++|+|++|++ ++..|+.+|..+|++|+.+++ ++|++.+.+.+++++. ++++..
T Consensus 127 ~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~ 203 (411)
T COG0498 127 KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAV 203 (411)
T ss_pred CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-Cceeec
Confidence 359999999999999999999999999999998 999999999999999999997 4689999999999865 557777
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCC------CeEEEEcCCCCccccC----
Q 019047 236 QFDNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKE------IKVVGVEPAERSVISG---- 304 (347)
Q Consensus 236 ~~~n~~~~~~g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~------~~vigVep~~~~~~~g---- 304 (347)
...|+..+ .||+|+++||++|++ +.||+|++|+|+||++.|++.++++..+. +++.+|+++++.....
T Consensus 204 nsiNp~rl-egq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~ 282 (411)
T COG0498 204 NSINPYRL-EGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKE 282 (411)
T ss_pred cccCHHHh-hhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhccc
Confidence 77889887 599999999999998 48999999999999999999999997543 6778888887643321
Q ss_pred C--CCCC--------Cchhc------cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 E--NAGY--------VPSIL------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ~--~~~~--------~p~~l------~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+ .+.. .|.++ .++....++.|||+|+.++.+.|++.|||++.|
T Consensus 283 ~~~~~~T~a~am~I~~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP 341 (411)
T COG0498 283 GRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEP 341 (411)
T ss_pred ccccccccccccccCCCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCc
Confidence 1 1111 12221 122235599999999999999999999999987
No 83
>PRK09225 threonine synthase; Validated
Probab=99.95 E-value=4.9e-26 Score=227.83 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=173.2
Q ss_pred CCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHH---HHHHHHHcCCCCCCCeEEEEeCCChhHHHH-HHHHHHcC
Q 019047 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYS---MITDAEESGDITPGKTVLVEPTTGNTGLGI-AFVAAVKG 179 (347)
Q Consensus 104 ~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~---~~~~a~~~G~~~~g~~~vv~assGN~g~Al-A~aa~~~G 179 (347)
.+||+++++ ++|+.--..+||||||||++.. ++.++++ +. ...|+++|+||+|.|+ |.++...|
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 478877642 5888777788999999999988 7777877 42 4679999999999999 78889999
Q ss_pred CcEEEEeCCC-CCHHHHHHHHhc-CCEE--EEECCCCChHHHHHHHHHHHHcC-----CCceecCCCCChHHHHHHHHHH
Q 019047 180 YKLIVTMPAS-TNLERRILLRAF-GAEI--ILTDPEKGLRGALDKAEEIVLNT-----PNAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 180 l~~~I~vp~~-~~~~~~~~l~~~-GA~V--~~~~~~~~~~~a~~~a~~~a~~~-----~~~~~~~~~~n~~~~~~g~~ti 250 (347)
++|+|++|++ ++..++.+|..+ |++| +.+++ +++++...+.++..+. -+++..+. .|+..+ .||.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G--~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri-~gQ~~y 231 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEG--NFDDCQALVKAAFNDEELKEKLKLSSANS-INIGRL-LAQIVY 231 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCC--CHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHH-HHHHHH
Confidence 9999999996 999999999999 9988 45554 5788888888776541 13444555 478887 599999
Q ss_pred HHHHHHhhCC---CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCCC-----CC--------C
Q 019047 251 GPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGEN-----AG--------Y 309 (347)
Q Consensus 251 ~~Ei~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~~-----~~--------~ 309 (347)
++|+++|+.+ .||.|++|+|+||++.|.+.+.+.-.|-.|+|+++- .+..+ +|.. +. .
T Consensus 232 yfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n-~n~~l~~~~~~G~y~~~~~~~T~s~amdI~ 310 (462)
T PRK09225 232 YFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATN-ENDVLTRFLKTGVYDPRPTVATLSPAMDIS 310 (462)
T ss_pred HHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEec-CChHHHHHHHcCCCccCCCCCCcCchhhcC
Confidence 9999999964 489999999999999999988444445569999983 33222 2310 00 1
Q ss_pred Cchhccc------------------c---ccC---------------eEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILDV------------------Q---LLD---------------EVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~~------------------~---~vd---------------~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|.++.+ . .-. .++.|+|+|+.++++++++++|+++.|
T Consensus 311 ~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dP 384 (462)
T PRK09225 311 VSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDP 384 (462)
T ss_pred CCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECc
Confidence 1222111 0 001 578999999999999999999999877
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.94 E-value=4.3e-25 Score=221.13 Aligned_cols=229 Identities=15% Similarity=0.093 Sum_probs=174.5
Q ss_pred CceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHH---HHHHHHcCCCCCCCeEEEEeCCChhHHH-HHHHHHHcCC
Q 019047 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSM---ITDAEESGDITPGKTVLVEPTTGNTGLG-IAFVAAVKGY 180 (347)
Q Consensus 105 TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~---~~~a~~~G~~~~g~~~vv~assGN~g~A-lA~aa~~~Gl 180 (347)
+||.++.+ ++|++....+||||||||++..+ +.+++++. .+...|+++|+||+|.| ++.++...|+
T Consensus 88 ~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 78877642 68999999999999999999976 55665541 12467999999999999 4888999999
Q ss_pred cEEEEeCCC-CCHHHHHHHHhcCC---EEEEECCCCChHHHHHHHHHHHHcC-----CCceecCCCCChHHHHHHHHHHH
Q 019047 181 KLIVTMPAS-TNLERRILLRAFGA---EIILTDPEKGLRGALDKAEEIVLNT-----PNAYMFQQFDNMANLKIHFDSTG 251 (347)
Q Consensus 181 ~~~I~vp~~-~~~~~~~~l~~~GA---~V~~~~~~~~~~~a~~~a~~~a~~~-----~~~~~~~~~~n~~~~~~g~~ti~ 251 (347)
+|+|++|++ +++.++.+|..+|+ +|+.+++ +++++...+.++..+. -+++-.+. .|+..+ .+|.+++
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri-~~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWARI-LAQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHH-HHHHHHH
Confidence 999999996 99999999999996 7888876 4788888887776541 13444444 477777 5999999
Q ss_pred HHHHHhhCC----CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCc---c-ccCCC-C-----C--------C
Q 019047 252 PEIWEDTLG----CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS---V-ISGEN-A-----G--------Y 309 (347)
Q Consensus 252 ~Ei~~ql~~----~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~---~-~~g~~-~-----~--------~ 309 (347)
+|+++|+.+ .+|.|+||+|+||++.|.+.+.+.-.|-.++|+++..+.- + .+|.. + . -
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~ 313 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDIL 313 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcC
Confidence 999999964 5899999999999999999987665566789998654431 1 13311 0 0 0
Q ss_pred Cchhcc---cc--ccC-------------------------------eEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILD---VQ--LLD-------------------------------EVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~---~~--~vd-------------------------------~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|.++. .. .-| .++.|+|+|+.++++.+++++|+++.|
T Consensus 314 ~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdP 387 (460)
T cd01560 314 KSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDP 387 (460)
T ss_pred CCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECc
Confidence 111111 10 001 468999999999999999999999876
No 85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.93 E-value=1.1e-24 Score=202.23 Aligned_cols=247 Identities=19% Similarity=0.159 Sum_probs=194.1
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCC--CCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCC--ChhHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEP--CRSVKDRIGYSMITDAEESGDITPGKTVLVEPTT--GNTGLG 170 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~p--tGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~ass--GN~g~A 170 (347)
.+|+.....+||+..++++++.+|.+||+|+|+..+ .|.+|+|...+.+.+|..+|. +++|++++ .||.++
T Consensus 6 f~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh~r~ 80 (323)
T COG2515 6 FPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNHVRQ 80 (323)
T ss_pred CCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhHHHH
Confidence 356777888999999999999999999999999964 399999999999999999996 55788776 799999
Q ss_pred HHHHHHHcCCcEEEEeCCCCC----HHHHHHHHhcCCEEEEECCCCCh--HHHHHHHHHHHHcCCCceec--CCCCChHH
Q 019047 171 IAFVAAVKGYKLIVTMPASTN----LERRILLRAFGAEIILTDPEKGL--RGALDKAEEIVLNTPNAYMF--QQFDNMAN 242 (347)
Q Consensus 171 lA~aa~~~Gl~~~I~vp~~~~----~~~~~~l~~~GA~V~~~~~~~~~--~~a~~~a~~~a~~~~~~~~~--~~~~n~~~ 242 (347)
+|++|+++|++|+.++..... ..++.+...+|++++.++...++ +.-.+...+..++.++..|+ .+..|+.-
T Consensus 81 tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g 160 (323)
T COG2515 81 TAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG 160 (323)
T ss_pred HHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc
Confidence 999999999999999887541 22566667899999999876554 33444555555544444443 33334433
Q ss_pred HHHHHHHHHHHHHHhhC--CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC-------------CCC
Q 019047 243 LKIHFDSTGPEIWEDTL--GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG-------------ENA 307 (347)
Q Consensus 243 ~~~g~~ti~~Ei~~ql~--~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g-------------~~~ 307 (347)
..||...+.||.+|.. -++|.||+++|+|||.+|+..++....++++|||+.......... ...
T Consensus 161 -~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~ 239 (323)
T COG2515 161 -ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGL 239 (323)
T ss_pred -cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3599999999999987 489999999999999999999999999999999998876532211 111
Q ss_pred -CCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 308 -GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 308 -~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
....+.++.++.-..+.+..+|-+++.+.+++.|||+.-|
T Consensus 240 ~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDp 280 (323)
T COG2515 240 GSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDP 280 (323)
T ss_pred CCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCccccc
Confidence 2333445556666667888889999999999999998765
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.91 E-value=3.9e-23 Score=191.21 Aligned_cols=249 Identities=22% Similarity=0.281 Sum_probs=203.0
Q ss_pred hhhhhccCCCceeecccc----ccC----CCCeEEEEeCCCCC-CCchhHHHHHHHHHH-----HHHcCCCCCCCe----
Q 019047 96 EDVTQLIGRTPMVYLNKV----TEG----CVGNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGKT---- 157 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l----~~~----~g~~Iy~K~E~~~p-tGSfK~Rga~~~~~~-----a~~~G~~~~g~~---- 157 (347)
..-..++..+||++++.+ +++ +..++|+|+++.-| +||.|.||..+-+.. |.+.|.+.-.+.
T Consensus 70 T~~~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L 149 (443)
T COG3048 70 TAATGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSIL 149 (443)
T ss_pred ccccCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHh
Confidence 334567888999988654 332 23599999999988 599999999987754 345665432211
Q ss_pred ------------EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 158 ------------VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 158 ------------~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
-+...|+||.|.++..+.+.+|++++|.|..+...+|++++++.|.+|+....+ |..|+++-++.+
T Consensus 150 ~~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~D--Y~~AVeeGRk~a 227 (443)
T COG3048 150 LSEEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQD--YGVAVEEGRKEA 227 (443)
T ss_pred hcHHHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecch--hhHHHHHhhhhh
Confidence 478899999999999999999999999999999999999999999999999864 578999999999
Q ss_pred HcCCCceecCCCCChHHHHHHHHHHHHHHHHhhC--------CCCCEEEEecCcchHHHHHHHHHHhc-CCCCeEEEEcC
Q 019047 226 LNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTL--------GCVDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEP 296 (347)
Q Consensus 226 ~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~--------~~~D~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVep 296 (347)
+..|.+||++. +|...+..||.+.+.-+..|++ ..|-.|..|||.||.-.|++.++|.. +.++.++-+||
T Consensus 228 ~~DP~c~FiDD-E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEP 306 (443)
T COG3048 228 ESDPNCFFIDD-ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEP 306 (443)
T ss_pred ccCCceEEecc-cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecC
Confidence 99999999988 5666666799999999999984 25779999999999999999999987 46799999999
Q ss_pred CCCccc-----cC-----------------------CCCCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 297 AERSVI-----SG-----------------------ENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 297 ~~~~~~-----~g-----------------------~~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..++.+ +| +.++..-..+....+|..++|+|+..++-..+|++.|||.+.|
T Consensus 307 thsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEP 385 (443)
T COG3048 307 THSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEP 385 (443)
T ss_pred CCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCc
Confidence 987532 33 0111111233456789999999999999999999999998876
No 87
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.79 E-value=2 Score=34.88 Aligned_cols=87 Identities=26% Similarity=0.324 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHH
Q 019047 168 GLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHF 247 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~ 247 (347)
|...+..|+.+|.+++++.+ ++.|++.++.+||+.+....+.+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~~~---------------------------------- 45 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSDDD---------------------------------- 45 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTTSS----------------------------------
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccccc----------------------------------
Confidence 55666677777744444443 56677777777776665543211
Q ss_pred HHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcC
Q 019047 248 DSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEP 296 (347)
Q Consensus 248 ~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep 296 (347)
...+|.+..++ .+|+||-|+|++..+.-....+ .+.-+++.+--
T Consensus 46 --~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l---~~~G~~v~vg~ 90 (130)
T PF00107_consen 46 --FVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL---RPGGRIVVVGV 90 (130)
T ss_dssp --HHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE---EEEEEEEEESS
T ss_pred --cccccccccccccceEEEEecCcHHHHHHHHHHh---ccCCEEEEEEc
Confidence 11223333332 6899999999887666544433 34445555543
No 88
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.85 E-value=4 Score=38.46 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=45.5
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+.+.+.+|++.+|...+|.-|.++...|+.+|.+++++.. +..+.+.++.+|++-+...
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEeC
Confidence 4556677888778777899999999999999998554433 5678888999999655443
No 89
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.25 E-value=5.6 Score=39.43 Aligned_cols=59 Identities=27% Similarity=0.431 Sum_probs=45.2
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
++.+...+.++++.+| .++|.-|.+++..|+.+|.+.+++.. ..+.+++..+.+|++.+
T Consensus 176 ~a~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 176 HGAVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCETV 234 (393)
T ss_pred HHHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeEE
Confidence 3444455677777666 77899999999999999998766432 35778999999999854
No 90
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.66 E-value=13 Score=36.18 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=43.8
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh-cCCEEEEEC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIILTD 209 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~-~GA~V~~~~ 209 (347)
.++..++|.-|...+..++.+|...+|++ +.++.|+++.+. .|++++..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecC
Confidence 68999999999999999999999999888 468899999987 778877655
No 91
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=87.31 E-value=2.9 Score=36.60 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCcEE-EEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHH-HHHHHHcCCCceecCCCCChHHHHH
Q 019047 168 GLGIAFVAAVKGYKLI-VTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDK-AEEIVLNTPNAYMFQQFDNMANLKI 245 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~-I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~-a~~~a~~~~~~~~~~~~~n~~~~~~ 245 (347)
|..+.++++.+|.++. -+-+.+.-..-...+...|-+|.+++++ .+..++ +..+.+.+|+.-.+.-+..+... .
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~---~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~-~ 88 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS---EEVLEKAAANLRRRYPGLRIVGYHHGYFDE-E 88 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHHHHHHCCCeEEEEecCCCCCh-h
Confidence 4788999999998873 3333333445566777889999999864 344444 44566677766554322222221 1
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEc
Q 019047 246 HFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVE 295 (347)
Q Consensus 246 g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe 295 (347)
-...+..+|.+ ..||+|+++.|+---=. .....+...+..-+++|-
T Consensus 89 ~~~~i~~~I~~---~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~i~vG 134 (172)
T PF03808_consen 89 EEEAIINRINA---SGPDIVFVGLGAPKQER-WIARHRQRLPAGVIIGVG 134 (172)
T ss_pred hHHHHHHHHHH---cCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEEC
Confidence 23344444433 37999999999864321 122333333334566664
No 92
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.16 E-value=7 Score=37.87 Aligned_cols=57 Identities=26% Similarity=0.480 Sum_probs=45.8
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.+.+++|++.++.+.+|.-|..+-..|+.+|..+++.+. +..|...++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 466778889999999999999999999999994444443 446667999999987764
No 93
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.09 E-value=4.1 Score=39.35 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=42.1
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.++++.+|. ++|.-|...+..++..|.+++++.....++.|++.++.+|++.+
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 456665555 67999999999999999986666555557889999999999974
No 94
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.81 E-value=4.5 Score=37.73 Aligned_cols=60 Identities=33% Similarity=0.380 Sum_probs=43.1
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.....++++.+|. ++|.-|...+..|+.+|.+.++.+ +.++.|++.++.+|++.+.
T Consensus 111 ~al~~~~~~~g~~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 111 AALEAAGDLKGRRVLVV-GAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred HHHHhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 34443333467675555 679999999999999999855555 3467888899999996543
No 95
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.80 E-value=28 Score=33.34 Aligned_cols=58 Identities=29% Similarity=0.339 Sum_probs=42.6
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+...+.++++.+|. ++|..|.+++..|+.+|.+.++.+.. ...+....+.+|++.++
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~v 216 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDIV 216 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceEe
Confidence 445556677777776 57999999999999999975555443 35677888889986443
No 96
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.70 E-value=7.6 Score=37.42 Aligned_cols=60 Identities=22% Similarity=0.378 Sum_probs=43.3
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.+.....+.++++.+|... |..|.+++.+|+.+|.++++ +. .++.+++.++.+|++.+..
T Consensus 157 ~a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~-~~--~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 157 QAAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVA-ID--IDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEE-Ec--CCHHHHHHHHHhCCceEec
Confidence 3444455667777655554 99999999999999997443 32 3567888889999976543
No 97
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.03 E-value=8.3 Score=36.57 Aligned_cols=58 Identities=24% Similarity=0.416 Sum_probs=45.3
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.+.+|++.++...+|--|.+++..|+.+|.++++... +..+.+.++.+|++.+..
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4566777888777777899999999999999998655443 567888889999976553
No 98
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=85.85 E-value=14 Score=33.69 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHH
Q 019047 138 IGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGA 217 (347)
Q Consensus 138 ga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a 217 (347)
-+..++....+-|. +.+=++..+=.+..++...++.++ ++.|=...-.++...+.....||+.+++++-.
T Consensus 26 ~a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~----- 95 (211)
T COG0800 26 EALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN----- 95 (211)
T ss_pred HHHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC-----
Confidence 35556666677776 444466677889999999999999 76665555568899999999999999998532
Q ss_pred HHHHHHHHHcCCCceecCCCCChHHH
Q 019047 218 LDKAEEIVLNTPNAYMFQQFDNMANL 243 (347)
Q Consensus 218 ~~~a~~~a~~~~~~~~~~~~~n~~~~ 243 (347)
.+..+.+.++ +..++.+-.++.-+
T Consensus 96 -~ev~~~a~~~-~ip~~PG~~TptEi 119 (211)
T COG0800 96 -PEVAKAANRY-GIPYIPGVATPTEI 119 (211)
T ss_pred -HHHHHHHHhC-CCcccCCCCCHHHH
Confidence 2334455555 67777776666544
No 99
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=85.85 E-value=8.8 Score=36.64 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=44.3
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh-cCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~-~GA~V~~ 207 (347)
+.+.+.+|++.+|...+|.-|.+++..|+.+|.++++... +..+.+.++. +|++-+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 3456778888888887899999999999999998554433 4678888887 9996544
No 100
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=85.58 E-value=9.9 Score=36.45 Aligned_cols=60 Identities=30% Similarity=0.457 Sum_probs=45.6
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+...+.+++++++ .++|..|.+++..|+.+|.+.++.+.. .+.+...++.+|++.+.
T Consensus 165 ~a~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 165 HAVDRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVL 224 (350)
T ss_pred HHHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEe
Confidence 3345556677777666 777999999999999999887666554 46778888999986654
No 101
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.30 E-value=34 Score=36.04 Aligned_cols=97 Identities=10% Similarity=0.130 Sum_probs=66.2
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
..++.++.|..|+.+|..-...|++++++=. ++.+.+.++.+|.+++.-|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~~~~g~~v~~GDat------------------------- 452 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLER---DISAVNLMRKYGYKVYYGDAT------------------------- 452 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHHhCCCeEEEeeCC-------------------------
Confidence 4589999999999999998889998876643 466777778888777665432
Q ss_pred CCChHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEc
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVE 295 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe 295 (347)
++ |+.++.+ .+.|.+|++.+.=....-+....|+.+|+.+|++--
T Consensus 453 --~~------------~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 453 --QL------------ELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred --CH------------HHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 11 1122221 246777777777555555666777777888887653
No 102
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=85.15 E-value=25 Score=34.06 Aligned_cols=57 Identities=26% Similarity=0.384 Sum_probs=42.9
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+.+|++.+|. ++|..|.+++..++.+|...++.+.. .+.+++.++.+|++-+.
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 45567778887776 67999999999999999954444432 56788888999996443
No 103
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=85.10 E-value=34 Score=33.23 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=42.7
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+.+|++.+|. ++|.-|.+++..|+.+|.+.+|.+. ..+.+++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~--~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAID--INPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCCeEE
Confidence 44556777776666 5799999999999999995444443 367788888999996544
No 104
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.05 E-value=28 Score=36.84 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=41.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~ 210 (347)
..++.++.|..|+.+|..-...|++++++ +.++.+.+.++.+|.+|+.-|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 45899999999999999998899988776 3466778888888888776553
No 105
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=83.77 E-value=2 Score=36.83 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=33.5
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFG 202 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~G 202 (347)
|+.-++||||.|+|...+..|.++.++.++. ...+.++..+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~ 42 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETR 42 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhC
Confidence 6788999999999999999999999998853 5555555443
No 106
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.68 E-value=9.4 Score=36.33 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=44.9
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.+.+.+.+.++.+.+|...+|..|.+++..|+.+|.++++... +. ++..++.+|++.+..
T Consensus 168 ~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~---~~-~~~~~~~~g~~~~~~ 227 (350)
T cd08274 168 NMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAG---AA-KEEAVRALGADTVIL 227 (350)
T ss_pred HHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC---ch-hhHHHHhcCCeEEEe
Confidence 3445566777888777777799999999999999999655443 23 677778899975443
No 107
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=83.63 E-value=4.5 Score=38.88 Aligned_cols=52 Identities=19% Similarity=0.110 Sum_probs=42.5
Q ss_pred EEEEeCC---ChhHHHHHHHHHHcCCcEEEEeCCC--CCHHHHHHHHhcCCEEEEEC
Q 019047 158 VLVEPTT---GNTGLGIAFVAAVKGYKLIVTMPAS--TNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~ass---GN~g~AlA~aa~~~Gl~~~I~vp~~--~~~~~~~~l~~~GA~V~~~~ 209 (347)
.|+..+. +|.++++..+++.+|+++.+..|++ .++..+..++..|++|..++
T Consensus 152 ~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 152 KIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred EEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 3566666 5999999999999999999999986 45555677777899998775
No 108
>PRK05993 short chain dehydrogenase; Provisional
Probab=83.56 E-value=21 Score=33.03 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=36.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++.+|+.++|.-|.++|......|.++++.... ..+...++..|.+++..+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~D 55 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLD 55 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEcc
Confidence 467888888999999999988889987776543 334445555565555544
No 109
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=83.30 E-value=15 Score=35.01 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=41.8
Q ss_pred HcCCCCCC--CeEEEEeCCChhHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHh-cCCEEEEEC
Q 019047 148 ESGDITPG--KTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRA-FGAEIILTD 209 (347)
Q Consensus 148 ~~G~~~~g--~~~vv~assGN~g~AlA~aa~~~Gl-~~~I~vp~~~~~~~~~~l~~-~GA~V~~~~ 209 (347)
+.+.+.++ ++.+|...+|.-|.++...|+.+|. ++++... +..+.+.++. +|++-+...
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 34445555 6777777779999999999999998 5554433 4567777765 999765543
No 110
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=82.75 E-value=5.6 Score=35.87 Aligned_cols=61 Identities=26% Similarity=0.319 Sum_probs=45.5
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
+|...+|+.|..++.+....+.++.+++.+. +......++..|++|+..+ ++-.+.+..+.
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d--~~~~~~l~~al 62 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD--YDDPESLVAAL 62 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES---TT-HHHHHHHH
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc--cCCHHHHHHHH
Confidence 6778889999999999888999999988875 4556677888999998655 32234444443
No 111
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.67 E-value=15 Score=35.56 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=44.0
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-hcCCEEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILT 208 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~-~~GA~V~~~ 208 (347)
+.+.+.+|++.+|...+|.-|.++...|+.+|.++++.. .+..+...++ .+|++-+..
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 345667888877877779999999999999999855433 2567788876 799976553
No 112
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=82.27 E-value=13 Score=34.83 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=42.6
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+...+.++.+.+|...+|.-|.+++..|+.+|.+.++... +..++..++.+|++-+.
T Consensus 131 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 189 (324)
T cd08292 131 LLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVR---RDAGVAELRALGIGPVV 189 (324)
T ss_pred HHHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHhcCCCEEE
Confidence 344456677778777777899999999999999998766644 34456666667875443
No 113
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=82.01 E-value=17 Score=34.91 Aligned_cols=62 Identities=29% Similarity=0.366 Sum_probs=44.5
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.+...+.++++.+|.+ +|..|.+++..|+.+|++.++.+. .+..+...++.+|++.++.
T Consensus 162 ~~~l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 162 WHAVRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLD 223 (351)
T ss_pred HHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEC
Confidence 3344555566777766664 689999999999999995444443 3666778888899976553
No 114
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=81.37 E-value=12 Score=36.23 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=49.8
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh-cCCEEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~-~GA~V~~ 207 (347)
+.-|..+.|++.+|.+-+|-.|.-+...|+..|.+++-+.. .++|.+.+.. +|.++..
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 56788888999999999999999999999999999988776 6789998887 6776654
No 115
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=81.08 E-value=7.7 Score=37.23 Aligned_cols=60 Identities=23% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+...+++|++.+|.. .|.-|.+++..|+.+|.+++++.. ++.|+++++.+||+.+.
T Consensus 155 ~~~~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 155 YRALLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHHHHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 3444455677787766655 588899999999999997444322 46688999999998654
No 116
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=80.83 E-value=15 Score=34.89 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=44.2
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.+...+.+|++.+|. ++|--|.+++..|+.+|.+-++.+. .+..+++.++.+|++.+..
T Consensus 153 ~~~l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i~ 214 (339)
T cd08239 153 YHALRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVIN 214 (339)
T ss_pred HHHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEc
Confidence 344444456677777676 5699999999999999998333333 3567888889999965543
No 117
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.46 E-value=12 Score=34.22 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=47.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
+++.+|+.++|.-|.++|......|.+++++-... .......++..|.+++.+..+.+..+.++.+.+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHH
Confidence 35778888899999999999999999988764322 2333456667788887665444434555555443
No 118
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=80.42 E-value=11 Score=32.83 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHH-HHHHcCCCceecCCCCChHHHHH
Q 019047 168 GLGIAFVAAVKGYKLIVTMPA-STNLERRILLRAFGAEIILTDPEKGLRGALDKAE-EIVLNTPNAYMFQQFDNMANLKI 245 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~I~vp~-~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~-~~a~~~~~~~~~~~~~n~~~~~~ 245 (347)
|..+.++++.+|.+..--++. +.-..-.+.+...|.+|.++++. .+..+.+. .+.+++|+...+.-++.+....
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~---~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~- 86 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK---PEVLEKAAERLRARYPGLKIVGYHHGYFGPE- 86 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-
Confidence 477899999999883222222 22233455566678999999864 34454444 5666777766543222222211
Q ss_pred HHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC
Q 019047 246 HFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG 304 (347)
Q Consensus 246 g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g 304 (347)
... ++.+++. ..||.|+++.|.---= -.+...+...+..-+++|-.. -...+|
T Consensus 87 ~~~----~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~vG~~-~d~~aG 140 (171)
T cd06533 87 EEE----EIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGVGGS-FDFLAG 140 (171)
T ss_pred hHH----HHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEecee-eEeccC
Confidence 111 1334442 3799999999985432 122333444445556776532 234444
No 119
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=80.24 E-value=17 Score=35.13 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=43.5
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.+.+|++.+|. ++|--|.+++..|+.+|.+.++.+. .++.+++.++.+|++-+.
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV 226 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 345556777787776 5799999999999999997555443 356788888999996544
No 120
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.80 E-value=15 Score=35.24 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=44.2
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+++.++....++++.+|. ++|.-|.+....++.+|.+.+|.+. .++.+++.++.+||+.+..
T Consensus 159 ~~al~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 159 IHAAHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVN 220 (343)
T ss_pred HHHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEec
Confidence 444444334466776665 5799999999999999996555444 2568888999999986543
No 121
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=79.25 E-value=29 Score=34.73 Aligned_cols=98 Identities=18% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHcCCCCCC-CeEEEEeCCChhHHH--HHHHHHHcCCcEEEEeCCCCC-H---------
Q 019047 126 ESMEPCRSVKDRIGYSMITDAEESGDITPG-KTVLVEPTTGNTGLG--IAFVAAVKGYKLIVTMPASTN-L--------- 192 (347)
Q Consensus 126 E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g-~~~vv~assGN~g~A--lA~aa~~~Gl~~~I~vp~~~~-~--------- 192 (347)
=+.+|.|..+ ....++.+.+.+|.+..| ++.||+..++..|.| +|.+. ..|.+++++.-...+ .
T Consensus 13 ~~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy 89 (398)
T PRK13656 13 TTAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWY 89 (398)
T ss_pred CCCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccc
Confidence 3456766644 456678888888887444 666677777777777 56666 678877665422111 1
Q ss_pred ---HHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 019047 193 ---ERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (347)
Q Consensus 193 ---~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (347)
.....++..|.++..+..+..-.+.++.+.+...
T Consensus 90 ~~~a~~~~a~~~G~~a~~i~~DVss~E~v~~lie~I~ 126 (398)
T PRK13656 90 NSAAFDKFAKAAGLYAKSINGDAFSDEIKQKVIELIK 126 (398)
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 1234556778776655544443455555544443
No 122
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=79.20 E-value=12 Score=34.15 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=38.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (347)
++.+|+.++|.-|.++|......|.+++++-...........+...|.++..+..+
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 64 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTAD 64 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEe
Confidence 46788888999999999999999998877644321222334455668787655433
No 123
>PRK08628 short chain dehydrogenase; Provisional
Probab=79.12 E-value=14 Score=33.46 Aligned_cols=68 Identities=19% Similarity=0.127 Sum_probs=46.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|--|.++|..-...|.+++++..........+.++..|.+++....+.+..+.+..+.+
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVE 75 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 46788888899999999998899999887655433333345566678887766654443444444443
No 124
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.97 E-value=24 Score=33.59 Aligned_cols=58 Identities=34% Similarity=0.504 Sum_probs=42.3
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.....+.++++.+| .++|..|.+++..|+.+|++.++.+.. ...+...++.+|++-+.
T Consensus 161 ~~~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~ga~~v~ 218 (345)
T cd08287 161 AVSAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSR--HEDRQALAREFGATDIV 218 (345)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCceEe
Confidence 33445566777777 468999999999999999986665554 35677888889985433
No 125
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.97 E-value=47 Score=34.41 Aligned_cols=52 Identities=23% Similarity=0.200 Sum_probs=41.8
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++. .|+..+.|.-|.+.+..|+.+|-+++++ +..+.++++.+.+||+.+.++
T Consensus 164 pg~-kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 164 PPA-KVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CCC-EEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 443 4899999999999999999999853332 357889999999999976554
No 126
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=78.83 E-value=21 Score=33.81 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=41.4
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
..+.++...+|...+|..|.+++..|+.+|+++++... ++.+.+.++.+|++-+.
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 215 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDV---GDEKLELAKELGADAFV 215 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 34666778777877788999999999999998665544 34667777888876443
No 127
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.58 E-value=12 Score=34.01 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=44.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|..|.++|......|.+++++.....+ ......++..|.++..+..+.+..+.++.+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 577888889999999999998899987665433111 122344566687887765544434455554443
No 128
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.48 E-value=15 Score=33.54 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=44.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|.++|..-...|.+++++..........+.+...|.++..+..+.+..+.+..+.+
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 57788888899999999998899999887765421122334455667777666544443444444433
No 129
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.47 E-value=15 Score=33.30 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=46.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++...... ......++..|.+++.+..+.+..+.++.+.+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGID 76 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHH
Confidence 577889899999999999999999987766543211 23344566678888766655443444444443
No 130
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=78.43 E-value=20 Score=34.02 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=39.6
Q ss_pred CCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 151 ~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.++++.+|.. +|..|.+++..|+.+|.+++++.. ...++..++.+|++-+.
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 455666766665 899999999999999998554433 45678888889986544
No 131
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=78.32 E-value=21 Score=34.66 Aligned_cols=58 Identities=26% Similarity=0.424 Sum_probs=43.0
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+...+.++++.+|. ++|.-|.+++..|+.+|.+.++.+. .++.|++.++.+|++.+..
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~ 242 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATVN 242 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEeC
Confidence 44556777777775 5799999999999999995444443 3678888999999975543
No 132
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.03 E-value=43 Score=34.83 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=63.1
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
.+++.++.|+.|+.+|..-+..|++++++-. ++.+.+.++.+|.+++.-+... .+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~~--~~~------------------- 473 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAAN--EEI------------------- 473 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCCC--HHH-------------------
Confidence 4588999999999999998888988766543 4566777777777777654321 111
Q ss_pred CCChHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEc
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVE 295 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe 295 (347)
.++.+ .+.|.+++.++.-....-+....++.+++.++++--
T Consensus 474 ------------------L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 474 ------------------MQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred ------------------HHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 11211 245777777766544444455566667788888653
No 133
>PRK12743 oxidoreductase; Provisional
Probab=77.97 E-value=16 Score=33.18 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=45.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+.++|.-|.++|......|.+++++...+... ...+.++.+|.++..+..+.+..+.++.+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 71 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQAL 71 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 4678888889999999999999999887765443222 224566678888877655444334444433
No 134
>PRK08226 short chain dehydrogenase; Provisional
Probab=77.86 E-value=14 Score=33.73 Aligned_cols=69 Identities=22% Similarity=0.083 Sum_probs=43.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|.-|.++|......|.+++++-...........+...|.++..+..+.+..+.++.+.+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 75 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKR 75 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHH
Confidence 577888889999999999998999987666443211122334444577776655444434455544443
No 135
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=77.81 E-value=20 Score=32.56 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=45.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++ .........+.++..|.++..+..+.+..+.++.+.+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLE 77 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 577899999999999999999999987764 2222344455666677777766544433344444433
No 136
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=77.76 E-value=22 Score=31.82 Aligned_cols=67 Identities=25% Similarity=0.242 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHc---CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HhcCCEEE
Q 019047 136 DRIGYSMITDAEES---GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEII 206 (347)
Q Consensus 136 ~Rga~~~~~~a~~~---G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~GA~V~ 206 (347)
-+|....+..+.+. +.--.| +.++..+.||.|..+|.....+|.+++++ . .+..+...+ ..+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~g-k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEG-KTVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEEE
Confidence 35777777777655 322233 45888888999999999999999987754 2 234444444 34476644
No 137
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=77.62 E-value=30 Score=31.56 Aligned_cols=59 Identities=25% Similarity=0.419 Sum_probs=44.1
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.+.+.+.+.++.+.++...+|..|.+++..++.+|++++++.+ +..+++.++.+|++-+
T Consensus 111 ~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 169 (303)
T cd08251 111 DAFARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATAS---SDDKLEYLKQLGVPHV 169 (303)
T ss_pred HHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCCEE
Confidence 3445666778888788788899999999999999998555533 3466777788887533
No 138
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=77.33 E-value=28 Score=32.52 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=43.1
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.++.+++|...+|..|.+++..|+.+|.+.+++.. +..+.+.++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 55667778777777899999999999999998765433 466777778899865443
No 139
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=77.33 E-value=30 Score=32.08 Aligned_cols=58 Identities=33% Similarity=0.370 Sum_probs=41.4
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK-LIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~-~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.+.+...+.++.+.+|. ++|-.|.+++..|+.+|++ +++ +.. ...+...++.+|++-+
T Consensus 120 ~~~~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~-~~~--~~~~~~~~~~~g~~~~ 178 (312)
T cd08269 120 NVFRRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIA-IDR--RPARLALARELGATEV 178 (312)
T ss_pred HHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEE-ECC--CHHHHHHHHHhCCceE
Confidence 34445556677777777 5788999999999999998 444 332 3566778888898533
No 140
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=77.27 E-value=15 Score=30.66 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=47.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH----HHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL----ERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~----~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (347)
+.+|+.+++.-|.++|..-...|-..++++..+.+. .....++..|.++.....+....+.++.+.+...
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 567888889999999999888877777666665212 2345567788988887755444555555544444
No 141
>PRK08589 short chain dehydrogenase; Validated
Probab=77.17 E-value=13 Score=34.46 Aligned_cols=69 Identities=12% Similarity=0.050 Sum_probs=44.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|--|.++|......|.+++++-...........++..|.+++.+..+.+..+.+..+.+.
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 567888888999999999988899988877544111122445556677776655444334445444443
No 142
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=77.15 E-value=18 Score=32.52 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=45.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|.++|......|.+++++.. +........++..|.++..+..+.+..+.+..+.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGR-SEPSETQQQVEALGRRFLSLTADLSDIEAIKALVD 72 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcC-chHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 57788888899999999999999998776653 32333455666778777766655444455544443
No 143
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.05 E-value=12 Score=36.00 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=47.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+..+|--|.++|......|.+++++...... ....+.++..|++++.+..+.+..+.++.+.+.+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 467888888999999999999999988776543211 1224456678988877665544455565554433
No 144
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=76.80 E-value=19 Score=34.51 Aligned_cols=59 Identities=25% Similarity=0.276 Sum_probs=44.0
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+...+.++++.+|. ++|..|.+++..|+.+|.+.++.+. .+..+++.++.+|++-++
T Consensus 152 ~~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 152 AFHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQTF 210 (347)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceEe
Confidence 3444556677776676 6799999999999999998655553 266778888999996544
No 145
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=76.57 E-value=10 Score=32.70 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=47.4
Q ss_pred EEEeCC--ChhHHHHHHHHHHcCCcEEEEeCCC--CCH--HHH----HHHHhcCCEEEEECCCCChHHHHHHHHHHHHcC
Q 019047 159 LVEPTT--GNTGLGIAFVAAVKGYKLIVTMPAS--TNL--ERR----ILLRAFGAEIILTDPEKGLRGALDKAEEIVLNT 228 (347)
Q Consensus 159 vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp~~--~~~--~~~----~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~ 228 (347)
|+..+. +|.++|++..++.+|..++++.|++ .++ ..+ +.+...|.++..++ +.++++..|
T Consensus 5 i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~---~~~e~l~~a------- 74 (158)
T PF00185_consen 5 IAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD---DIEEALKGA------- 74 (158)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES---SHHHHHTT--------
T ss_pred EEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe---CHHHhcCCC-------
Confidence 445553 7999999999999999999999987 555 233 34455699999885 344444332
Q ss_pred CCceecCCCC
Q 019047 229 PNAYMFQQFD 238 (347)
Q Consensus 229 ~~~~~~~~~~ 238 (347)
+..|.+.+.
T Consensus 75 -Dvvy~~~~~ 83 (158)
T PF00185_consen 75 -DVVYTDRWQ 83 (158)
T ss_dssp -SEEEEESSS
T ss_pred -CEEEEcCcc
Confidence 566665443
No 146
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=75.89 E-value=39 Score=31.70 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=42.8
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+.++.+.++...+|..|.+++..|+.+|++++.+.. ...++..++.+|++-++
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 190 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQVI 190 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEEE
Confidence 3455667778777777899999999999999998665543 45667777888985443
No 147
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=75.61 E-value=13 Score=36.47 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=48.5
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+++++...++||++ |...+.|-.|.....+|+.+|.+++.+- .+..|++..+.+||+.+...
T Consensus 156 y~alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 156 YRALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVINS 217 (339)
T ss_pred eeehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEEEc
Confidence 45666666788876 7788888788888888999997766653 37888999999999988765
No 148
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.55 E-value=16 Score=32.52 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=41.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHH-HHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR-ILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~-~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|..|.+++......|.+++++.......... ..+...| +++.+..+....+.+.++.+.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHHH
Confidence 5778899999999999999999999888776543211111 2223333 455555444334444444443
No 149
>PRK06114 short chain dehydrogenase; Provisional
Probab=75.54 E-value=24 Score=32.01 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=46.2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++|--|.++|..-...|.++++....... ....+.++..|.++..+..+.+..+.+..+.+..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~ 80 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVART 80 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 577888888999999999988899988876554322 2234456666877766654443344555554433
No 150
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=75.44 E-value=23 Score=33.14 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=38.0
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+++.+|...+|..|.+++..|+.+|+++++... ...+++.++.+|++-+.
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 196 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEVI 196 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEEE
Confidence 3456667777799999999999999998654433 45677888889985443
No 151
>PRK12937 short chain dehydrogenase; Provisional
Probab=75.40 E-value=22 Score=31.75 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=46.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|.-|.++|..-...|.+++++.....+ ....+.++.+|.++..+..+....+.+.++.+.
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 567888889999999999999999988776544321 123345566788888776554434455555443
No 152
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.20 E-value=23 Score=31.75 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=45.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|.++|..-...|.++++....+... ...+.++..|.++..+..+.+..+.+..+.+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFA 74 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 5778888899999999999999999887654433221 2334566778888776654443444444443
No 153
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=74.94 E-value=21 Score=33.54 Aligned_cols=58 Identities=36% Similarity=0.454 Sum_probs=43.2
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+.+.++.+++|. ++|-.|.+++..|+.+|.+++++ . ....+++.++.+|+..+.
T Consensus 147 ~~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~-~--~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 147 ILEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV-G--RHSEKLALARRLGVETVL 204 (319)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE-c--CCHHHHHHHHHcCCcEEe
Confidence 3455667777787777 57999999999999999994443 3 246778888889987544
No 154
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=74.81 E-value=59 Score=30.74 Aligned_cols=54 Identities=33% Similarity=0.384 Sum_probs=39.6
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
..+.++++++|. ++|.-|.+++.+|+.+|+..++.+ .....+...++.+|+.++
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~~ 216 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEPI 216 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeEE
Confidence 445566777776 589999999999999998434444 335677788888998643
No 155
>PRK06139 short chain dehydrogenase; Provisional
Probab=73.79 E-value=15 Score=35.51 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=46.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (347)
++.||+..+|--|.++|......|.+++++...... ......++..|+++..+..|.+..+.++.+.+...
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 567888888999999999999999997766543211 12234566789888765544443455555554443
No 156
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.75 E-value=75 Score=29.83 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=26.7
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
|..-++|.+|.++|..++..|.+++++-+.
T Consensus 6 IaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 6 VTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 677799999999999999999998888764
No 157
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=73.68 E-value=20 Score=32.99 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=44.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++..... .......++..|.++..+..+....+.++.+.+
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 46788888899999999999899998777654321 112234455668887766554433444444433
No 158
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=73.60 E-value=26 Score=31.11 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=45.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|..|.+++......|.++++......+ ......++..+.+++.+..+....+.+..+.+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVD 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 467888889999999999988889987666544322 12233455668888877655444455554443
No 159
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=73.08 E-value=18 Score=34.78 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=39.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHH----HHhcCCEEEEEC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRIL----LRAFGAEIILTD 209 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~----l~~~GA~V~~~~ 209 (347)
.+.+...-+.|-+.++-.+|+.+|+.+.|..|+...+ .-+.. .+..|++|.++.
T Consensus 154 ~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~ 213 (310)
T COG0078 154 LKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTE 213 (310)
T ss_pred cEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEec
Confidence 4544444445899999999999999999999996543 32333 344599999986
No 160
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=72.87 E-value=45 Score=31.26 Aligned_cols=56 Identities=29% Similarity=0.450 Sum_probs=41.8
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.++++.+|...+|-.|.+++..|+.+|.+++++.. +..+...++.+|++-+.
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 189 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRPI 189 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceEE
Confidence 355667778888888899999999999999998655443 44566777788874443
No 161
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=72.76 E-value=27 Score=32.71 Aligned_cols=51 Identities=27% Similarity=0.358 Sum_probs=39.5
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
++++.+|...+|..|.+++..|+.+|.++++... .+.+.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4557677766799999999999999998655543 55788888999985444
No 162
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=72.74 E-value=30 Score=33.55 Aligned_cols=57 Identities=28% Similarity=0.390 Sum_probs=42.3
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+.+|++.+|. ++|.-|.+++..|+.+|.+.+|.+. .++.|++.++.+|++.+.
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 44556777787776 5799999999999999995444443 256678888899997554
No 163
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=72.69 E-value=48 Score=30.86 Aligned_cols=57 Identities=26% Similarity=0.429 Sum_probs=41.7
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.+.+.+.++...+|...+|..|.+++..|+.+|++++.... ...+...++.+|++-+
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 191 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADVA 191 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 44556667778777777899999999999999998554432 3455666777887543
No 164
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.55 E-value=48 Score=30.62 Aligned_cols=55 Identities=29% Similarity=0.441 Sum_probs=41.1
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.++++.+|...+|..|.++...|+..|.+++.+.. +..+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR---SPERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 44556677777777899999999999999998555433 34667777888985544
No 165
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=72.28 E-value=41 Score=31.70 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=37.8
Q ss_pred CeEEEE-eCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 156 KTVLVE-PTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 156 ~~~vv~-assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
...++. .++|..|.++...|+.+|.++++... +..+++.++.+|++-+...
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 344454 68899999999999999997554433 4678888888999766543
No 166
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=72.02 E-value=23 Score=32.40 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=44.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++-..... ......++..|++++.+..+.+..+.+..+.+
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVS 79 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 567888889999999999998999987766332111 11233455668888766654443444444443
No 167
>PRK08643 acetoin reductase; Validated
Probab=72.00 E-value=28 Score=31.51 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=44.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|.-|.++|......|.+++++....... .....++..|.++..+..+.+..+.++.+.+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4678888899999999999989999876664332111 12234455677877666544444555554443
No 168
>PRK06128 oxidoreductase; Provisional
Probab=71.96 E-value=33 Score=32.26 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=45.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-C--CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-T--NLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|..-...|.++++..... . .......++..|.+++.+..+....+.++.+.+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 4778888899999999999999999987754322 1 122345667778888776654443444444433
No 169
>PRK09134 short chain dehydrogenase; Provisional
Probab=71.90 E-value=33 Score=31.16 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=45.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+..+|.-|.++|......|.++++....+.+. .-...++..|.+++.+..+.+..+.+..+.+.+
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARA 81 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4678888899999999999999999887765432211 122344455888876654444345555555443
No 170
>PRK06172 short chain dehydrogenase; Provisional
Probab=71.55 E-value=25 Score=31.80 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=45.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..+.+..+.+..+.+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 577888889999999999998999987766543211 122445566787777665444434555554443
No 171
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=71.23 E-value=23 Score=34.04 Aligned_cols=87 Identities=23% Similarity=0.328 Sum_probs=57.1
Q ss_pred EEEEeCCCCC-----CCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HH
Q 019047 121 VAAKLESMEP-----CRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ER 194 (347)
Q Consensus 121 Iy~K~E~~~p-----tGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~ 194 (347)
-++|.+..-| |-+.---.|+-|+.+..... +|+..+=-+...--|.++-..|+.+||+.+=++.+...- +-
T Consensus 125 ~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel 201 (354)
T KOG0025|consen 125 DLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEEL 201 (354)
T ss_pred ceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHH
Confidence 4455554322 33333446777777776544 345433333334567788888999999999888876554 44
Q ss_pred HHHHHhcCCEEEEECC
Q 019047 195 RILLRAFGAEIILTDP 210 (347)
Q Consensus 195 ~~~l~~~GA~V~~~~~ 210 (347)
.++++.+||+-+.++.
T Consensus 202 ~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 202 KKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHcCCceEecHH
Confidence 6688999999998763
No 172
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=71.16 E-value=23 Score=31.73 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=44.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+..+|+.++|.-|.++|......|.+++++...... ......+...|.+++....+....+.+..+.+
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFD 73 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 467888889999999999999999987765433211 12244555678888766544443444544443
No 173
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=71.08 E-value=15 Score=27.28 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=38.2
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC-----CH----HHHHHHHhcCCEEEE
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-----NL----ERRILLRAFGAEIIL 207 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~-----~~----~~~~~l~~~GA~V~~ 207 (347)
++.-++|..|.-+|.+.+.+|.+++++...+. ++ .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 67889999999999999999999999887642 22 234566777877764
No 174
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.94 E-value=36 Score=32.17 Aligned_cols=70 Identities=21% Similarity=0.154 Sum_probs=46.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++|.-|.++|..-...|.++++.-..... ....+.++..|.+++.+..+....+.+..+.+.+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~ 84 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATA 84 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467888888999999999988899987765332211 2234556677888887765544344555554443
No 175
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=70.93 E-value=29 Score=32.70 Aligned_cols=58 Identities=24% Similarity=0.337 Sum_probs=41.4
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+...+.++.++++. ++|..|.+++..|+.+|++++++.. ...+++.++.+|++-+.
T Consensus 154 ~l~~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 154 ALRDAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVV 211 (330)
T ss_pred HHHhhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEe
Confidence 3333456666676676 6777999999999999998665544 45567777888876554
No 176
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=70.91 E-value=40 Score=33.62 Aligned_cols=126 Identities=15% Similarity=0.178 Sum_probs=68.9
Q ss_pred EEEeCCC-hhHHHHHHHHHHcCCcEEEEeCC-CCC----HHHHHHHHhcCC-EEEEECCCCChHHHH-HHHHHHHHc---
Q 019047 159 LVEPTTG-NTGLGIAFVAAVKGYKLIVTMPA-STN----LERRILLRAFGA-EIILTDPEKGLRGAL-DKAEEIVLN--- 227 (347)
Q Consensus 159 vv~assG-N~g~AlA~aa~~~Gl~~~I~vp~-~~~----~~~~~~l~~~GA-~V~~~~~~~~~~~a~-~~a~~~a~~--- 227 (347)
|+..|+| .+...+.+.....+++++-|.-+ +++ ....+....+|| +++.++.. ++-+ +.+...-+.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r---~ef~~~~i~~aI~anA~ 77 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR---DEFAEDYIFPAIKANAL 77 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H---HHHHHHTHHHHHHTT--
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH---HHHHHHHHHHHHHHHHH
Confidence 4667777 77788888888888888866554 343 233556778999 99998842 2222 222222222
Q ss_pred CCCceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEE-ecCcchHHHHHHHHHHhcCCCCeEEE
Q 019047 228 TPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA-AIGTGGTITGTGRFLKMMNKEIKVVG 293 (347)
Q Consensus 228 ~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~-pvG~Gg~~~Gi~~~~k~~~~~~~vig 293 (347)
+.|.|++... ..++. ...-..|+.++. ..++|.- |.|-|--..=+-.+++.+.|+.+|++
T Consensus 78 Yeg~YpL~ts--l~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 78 YEGRYPLSTS--LARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp BTTTB--CCC--CHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred hCCCcccccc--chHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 2233433221 12221 123334555554 4677776 56777777777778888899998873
No 177
>PRK12939 short chain dehydrogenase; Provisional
Probab=70.48 E-value=27 Score=31.20 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=44.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++|.-|.++|......|.+++++..... .......++..|+++..+..+.+..+.++.+.+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 56788888899999999999889998766632211 11223445566777776654444345555544433
No 178
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=70.45 E-value=27 Score=31.38 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=45.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|--|.++|......|.++++....... ......++..|.+++.+..+....+.++.+.+.
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 577888889999999999988899987765433211 122345556788887776554444555555443
No 179
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=70.39 E-value=29 Score=33.56 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=42.4
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+...+.+|++.+|. ++|.-|.+++..|+.+|...+|.+.. .+.+++.++.+|++.+..
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i~ 238 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFVN 238 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEEc
Confidence 33456677776666 57999999999999999854444432 467888899999975543
No 180
>PRK08278 short chain dehydrogenase; Provisional
Probab=70.37 E-value=34 Score=31.61 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=44.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--------~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+..+|--|.++|......|.+++++.....+ ....+.++..|.+++.+..+.+..+.+..+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 467888888999999999999999988877654321 1123445667888776655444344444443
No 181
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.37 E-value=26 Score=31.33 Aligned_cols=70 Identities=17% Similarity=0.079 Sum_probs=43.9
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
+++.+|+.++|--|.++|......|.+++++...... ....+.++..|+++..+..+....+.++++.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 3567788888999999999998899987665443211 223344566688876665443323445444443
No 182
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=70.26 E-value=56 Score=29.97 Aligned_cols=55 Identities=29% Similarity=0.410 Sum_probs=40.3
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.++++.++...+|..|.+++..++.+|.++++..+ +..+++.+..+|++-+.
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 194 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATAS---SAEGAELVRQAGADAVF 194 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 55666777777777899999999999999988655544 34566666778875443
No 183
>PRK07806 short chain dehydrogenase; Provisional
Probab=70.25 E-value=38 Score=30.40 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=43.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-H-HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-L-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|.+++......|.+++++...... . .-...++..|.++..+..+.+..+.+..+.+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 467888888999999999988899998776543211 1 1123345567777666554443444444433
No 184
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=69.78 E-value=51 Score=31.18 Aligned_cols=55 Identities=36% Similarity=0.490 Sum_probs=40.8
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V 205 (347)
.+...+.+++++++. ++|..|.+++..|+.+|+++++... +..+...++.+|++=
T Consensus 152 ~~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~~ 206 (337)
T cd08261 152 VRRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGADD 206 (337)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCCE
Confidence 344556677777777 5788999999999999998665533 466777778888643
No 185
>PRK05876 short chain dehydrogenase; Provisional
Probab=69.70 E-value=27 Score=32.42 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=43.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|..-...|.++++....... ......++..|.++..+..+.+..+.+..+.+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 567888888999999999998999987665432111 11233455668888766554443445544443
No 186
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=69.68 E-value=63 Score=30.53 Aligned_cols=58 Identities=31% Similarity=0.428 Sum_probs=40.2
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V 205 (347)
.+.+...+.++++++|. ++|-.|.+++..|+.+|++.++.... +..+...++.+|++-
T Consensus 156 ~~l~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~~--s~~~~~~~~~~g~~~ 213 (343)
T cd08235 156 NAQRKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSDL--NEFRLEFAKKLGADY 213 (343)
T ss_pred HHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCcE
Confidence 34444456777787777 57889999999999999994444332 455666667778743
No 187
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=69.62 E-value=25 Score=34.33 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=42.5
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
..+.++.+.+|...+|..|.+++..|+.+|.+.++.. .+..++..++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 3456667766766679999999999999999976543 367788888899986554
No 188
>PLN02740 Alcohol dehydrogenase-like
Probab=69.37 E-value=45 Score=32.55 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=42.3
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+...+.+|++.+|. +.|.-|.+++..|+.+|.+-+|.+. .++.|++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 44556777776665 5799999999999999985444443 256788888999997654
No 189
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=69.29 E-value=31 Score=30.46 Aligned_cols=94 Identities=11% Similarity=0.055 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHhcCCEEEEECCCCChHHHHHH-HHHHHHcCCCceec--CCCCChHHHH
Q 019047 169 LGIAFVAAVKGYKLIVTMPA-STNLERRILLRAFGAEIILTDPEKGLRGALDK-AEEIVLNTPNAYMF--QQFDNMANLK 244 (347)
Q Consensus 169 ~AlA~aa~~~Gl~~~I~vp~-~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~-a~~~a~~~~~~~~~--~~~~n~~~~~ 244 (347)
..+.++++.+|.+..--++. +.-..-.+.....|..|.++++. .+..+. +..+.+++|+.... ++|-++.
T Consensus 14 ~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~---~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~--- 87 (177)
T TIGR00696 14 IGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK---PDVLQQLKVKLIKEYPKLKIVGAFGPLEPE--- 87 (177)
T ss_pred HHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCCEEEEECCCCChH---
Confidence 67889999998764322221 11123344456678899999864 344444 44566667765433 3333221
Q ss_pred HHHHHHHHHHHHhhC-CCCCEEEEecCcch
Q 019047 245 IHFDSTGPEIWEDTL-GCVDIFVAAIGTGG 273 (347)
Q Consensus 245 ~g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg 273 (347)
-. .+|.+++. ..||.|+++.|.--
T Consensus 88 -~~----~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 88 -ER----KAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred -HH----HHHHHHHHHcCCCEEEEEcCCcH
Confidence 11 23344442 37999999999743
No 190
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=69.26 E-value=28 Score=33.10 Aligned_cols=52 Identities=31% Similarity=0.334 Sum_probs=39.1
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+|++.+|. ++|..|.++...|+.+|.+.++++ ..+..+...++.+|++.+.
T Consensus 162 ~~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 356677775 479999999999999999644444 3466788888899996544
No 191
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=69.22 E-value=18 Score=36.48 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=41.5
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
+...+|++ |+..+.|.-|..+|..++.+|.+++|+ +.++.+....+.+|++++
T Consensus 197 ~~~l~Gkt-VvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGKV-AVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 44455654 899999999999999999999975553 235677888888999765
No 192
>PRK12744 short chain dehydrogenase; Provisional
Probab=69.09 E-value=29 Score=31.46 Aligned_cols=68 Identities=25% Similarity=0.194 Sum_probs=43.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC-C----HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-N----LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~-~----~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|..-...|.+++++..... . ....+.++..|.++..+..+.+..+.++.+.+
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 81 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFD 81 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHH
Confidence 46788888899999999998889999666543211 1 12234455668887766554443445544443
No 193
>PRK07454 short chain dehydrogenase; Provisional
Probab=69.07 E-value=27 Score=31.27 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=42.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|..|.+++......|.+++++...... ......++..+.++..+..+.+..+.+..+.+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIA 75 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHH
Confidence 467888888999999999999999987776543211 11223345556677665544433444444443
No 194
>PRK06194 hypothetical protein; Provisional
Probab=69.00 E-value=32 Score=31.72 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=43.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++-..... ......+...|.+++.+..+.+..+.++.+.+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 467888889999999999988899987765432111 12233444557888766655443445544443
No 195
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=69.00 E-value=23 Score=30.87 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=47.6
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHc
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-----TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLN 227 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-----~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~ 227 (347)
+.+|+.+.|..|..+|..=...|-.-+|++... .....++.++..|++|.....+.+..+.++.+.+...+
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~ 77 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQ 77 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHh
Confidence 457888899999999999777776555666554 22356788899999999877555445666666655443
No 196
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=68.94 E-value=28 Score=32.74 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=42.1
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.+.+.+.+.++.+.+|. ++|..|.+++..|+.+|++++++.+. ..+++.++.+|++-+
T Consensus 158 ~~~~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 215 (329)
T cd08298 158 RALKLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADWA 215 (329)
T ss_pred HHHHhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcEE
Confidence 34455666777776665 68899999999999999876655443 367777788998543
No 197
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=68.91 E-value=46 Score=31.42 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=42.8
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~-~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.+.+...+.++.+.+|.. +|--|.+++..|+. +|.+++.... +..+++.++.+|++.+..
T Consensus 153 ~~~~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 153 KAIKVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTIN 213 (338)
T ss_pred HHHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEec
Confidence 344455567777777776 78899999999997 5987554433 456788888899866543
No 198
>PRK08303 short chain dehydrogenase; Provisional
Probab=68.83 E-value=33 Score=32.64 Aligned_cols=69 Identities=25% Similarity=0.192 Sum_probs=43.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC-----------CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-----------NLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~-----------~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.+++--|.++|......|.+++++..... -....+.++..|.+++.+..+..-.+.++.+.+.
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46778888888999999999889998777644311 1122345566787776665444334444444433
No 199
>PRK07478 short chain dehydrogenase; Provisional
Probab=68.74 E-value=29 Score=31.41 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=43.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|..-...|.+++++.....+ ......++..|.++..+..+....+.++.+.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVA 75 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 467888888999999999988899987776443211 11234456678777766544433444444433
No 200
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.73 E-value=32 Score=30.69 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=44.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|..|.+++......|.+++++.....+ ......++..|.+++.+..+.+..+.+..+.+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHH
Confidence 467888889999999999988899987776543211 11233455667788766654433445555444
No 201
>PRK10083 putative oxidoreductase; Provisional
Probab=68.55 E-value=47 Score=31.41 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=44.2
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~-~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.+.+.+|++++|.. +|--|.+++..|+. +|.+.++.+.. .+.|...++.+|++-+.
T Consensus 151 ~~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 151 NVTGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 344556677777766655 78889998888886 69887666543 67888888999996554
No 202
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=68.52 E-value=1.1e+02 Score=29.20 Aligned_cols=55 Identities=35% Similarity=0.508 Sum_probs=39.6
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl-~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+...++++.+|. ++|..|.+++..|+.+|+ +++++ . .+..+...++.+|++-+.
T Consensus 172 ~~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~-~--~~~~~~~~~~~~g~~~vi 227 (361)
T cd08231 172 AGPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVI-D--GSPERLELAREFGADATI 227 (361)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE-c--CCHHHHHHHHHcCCCeEE
Confidence 3444466777776 579999999999999999 54444 2 256677888889985443
No 203
>PRK05866 short chain dehydrogenase; Provisional
Probab=68.43 E-value=27 Score=32.80 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=43.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++...... ......+...|.++..+..+.+..+.+..+.+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 367888888999999999988899988776554211 11223444557776665544433445555444
No 204
>PRK05867 short chain dehydrogenase; Provisional
Probab=68.25 E-value=31 Score=31.25 Aligned_cols=68 Identities=9% Similarity=0.084 Sum_probs=43.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|..-...|.+++++...... ......++..|.++..+..+.+..+.++.+.+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 467888888999999999988899987665432111 11233455567777665544443455554443
No 205
>PRK06949 short chain dehydrogenase; Provisional
Probab=68.12 E-value=27 Score=31.56 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=40.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+.++|.-|.++|......|.+++++...... ......++..+.++..+..+.+..+.+..+.
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 77 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAV 77 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 577888889999999999999999987766543211 1112233444555555543333233444433
No 206
>PRK06701 short chain dehydrogenase; Provisional
Probab=68.11 E-value=43 Score=31.36 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=45.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..+....+.++.+.+
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 467888888999999999998899998776554322 23344556678888766554443455544443
No 207
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=67.97 E-value=31 Score=31.33 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=44.2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++...... ....+.++..|.+++.+..+.+..+.++.+.+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAE 81 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 477888889999999999988899987665432111 11233455667787776655544455554443
No 208
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=67.90 E-value=31 Score=31.21 Aligned_cols=70 Identities=21% Similarity=0.137 Sum_probs=44.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
+++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..+.+..+.+..+.+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFAR 81 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 3577888888999999999988889987776553211 122334556676666655444334444444443
No 209
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=67.75 E-value=34 Score=33.58 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=43.0
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
..+.++.+.+|...+|.-|.+++..|+.+|.+.++.. .+..+.+.++.+|+..+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4456667777777779999999999999999865543 2556788888899876653
No 210
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=67.68 E-value=59 Score=30.55 Aligned_cols=55 Identities=31% Similarity=0.432 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~ 204 (347)
..+.+.++.+.+|. ++|..|.+++..|+.+|++++ ++..+....+...++.+|++
T Consensus 158 ~~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 158 ERSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCc
Confidence 33455667777775 479999999999999999854 34333456777888888874
No 211
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=67.63 E-value=60 Score=31.38 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=41.7
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.++++.+|. ++|.-|.+++..|+.+|.+.++.+.. ...|...++.+|++.++
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i 236 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVI 236 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 4456667777776 67999999999999999975554443 56778888889986544
No 212
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=67.61 E-value=69 Score=29.97 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=40.6
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh-cCCEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIIL 207 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~-~GA~V~~ 207 (347)
.+.+.++.+.++...+|-.|.+++..|+.+|.+++++.. ...+...++. +|++-+.
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~~~ 196 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDAAI 196 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCceEE
Confidence 345566677777777899999999999999997555433 4556777766 8885443
No 213
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=67.53 E-value=62 Score=30.71 Aligned_cols=53 Identities=30% Similarity=0.350 Sum_probs=40.0
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 152 ~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
..++++++|.+ +|-.|.+++..|+.+|.+.++++ ..+..+...++.+|++.+.
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v 211 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVV 211 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEE
Confidence 45667777754 68899999999999999845555 3467888888999986443
No 214
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.50 E-value=67 Score=30.53 Aligned_cols=60 Identities=30% Similarity=0.336 Sum_probs=43.1
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.+.+.++++.+|. ++|.-|.+++..|+.+|.+.++++.. +..+...++.+|++-+.
T Consensus 153 ~~~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 153 HACRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 34466777888887776 56888999999999999984444432 35667777878886544
No 215
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.32 E-value=35 Score=30.63 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=45.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+..+|.-|.++|..-...|.+++++.....+. .....++..|.+++.+..+....+.+..+.+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 4678888899999999999888899887765543222 22334556687877665544444555555443
No 216
>PRK06181 short chain dehydrogenase; Provisional
Probab=67.30 E-value=31 Score=31.37 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=43.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.+++......|.+++++...... ......++..|.+++.+..+....+.+..+.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 70 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIE 70 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 356888888999999999998999987776543211 12233455567777766544433445554444
No 217
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=67.24 E-value=38 Score=31.72 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=39.5
Q ss_pred CCCCC-eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 152 ITPGK-TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 152 ~~~g~-~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.++. +.+|...+|..|.+++..|+.+|.+.++... ...+++.++.+|++-+.
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 195 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTG---KAEEEDYLKELGASEVI 195 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 55666 7777777799999999999999998655543 34556777889985443
No 218
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.24 E-value=40 Score=30.30 Aligned_cols=68 Identities=25% Similarity=0.315 Sum_probs=44.2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|..-...|.+++++.....+ ......++..+.++..+..+.+..+.+..+.+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLD 72 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 356888889999999999988889988776543221 22344455567777766554443444444443
No 219
>PRK08703 short chain dehydrogenase; Provisional
Probab=67.24 E-value=65 Score=28.71 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=26.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
++.+|+.++|.-|.++|......|.+++++..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 57788888999999999998888988666543
No 220
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=67.21 E-value=31 Score=30.90 Aligned_cols=68 Identities=22% Similarity=0.098 Sum_probs=43.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|..-...|.+++++...... ......++..+.++..+..+....+.++.+.+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 72 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVA 72 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 467888889999999999998899987776543211 11223345567777766655443444544443
No 221
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=67.15 E-value=36 Score=30.79 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=43.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|.-|.++|......|.+++++...... ......++..|.++..+..+.+..+.++.+.+.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHH
Confidence 467888889999999999998899887765432111 112234455577776665444434555554443
No 222
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.14 E-value=25 Score=34.32 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=52.5
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
..+|.+++..++|.+ ++.-++|.-|...-..|+.+|-.=+|++. ..+.|+++.+.+||+++.-.
T Consensus 158 ~~HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 158 GVHACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeec
Confidence 346677777788866 78899999999999999999988776654 57889999999999998643
No 223
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=67.09 E-value=43 Score=30.42 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=44.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+.++|.-|.++|......|.++++....+.+. .....++..|.++..+..+.+-.+.+....
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~ 76 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLI 76 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHH
Confidence 5778888899999999999999999887765543222 223455666888776554433334444443
No 224
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=66.98 E-value=75 Score=29.59 Aligned_cols=55 Identities=33% Similarity=0.444 Sum_probs=40.3
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.++...++. ++|..|.+++..|+..|.++++..+ +..+++.++.+|++-++
T Consensus 155 ~~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 155 LGPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred hcCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 3456677776665 6888999999999999998555443 45677777778876554
No 225
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=66.98 E-value=44 Score=29.58 Aligned_cols=67 Identities=24% Similarity=0.184 Sum_probs=43.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+..+|.-|..++......|.+++++.....+. .....++..|.++..+..+....+.+..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALI 73 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 4678888899999999999888899965554432221 123445667888877654443334444443
No 226
>PRK07890 short chain dehydrogenase; Provisional
Probab=66.95 E-value=33 Score=30.96 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=43.9
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+++.+|+.++|.-|.++|......|.+++++...... ......++..|.++..+..+.+..+.+..+.+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHH
Confidence 3577888889999999999999999987766442211 11223444557777666544443445544443
No 227
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=66.85 E-value=44 Score=31.63 Aligned_cols=58 Identities=34% Similarity=0.473 Sum_probs=43.6
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
+...+.+.++++++|. ++|-.|.+++..++.+|++.++.+.. ...+...++.+|++-+
T Consensus 153 ~~~~~~~~~g~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~ 210 (341)
T cd08262 153 AVRRARLTPGEVALVI-GCGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGADIV 210 (341)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEE
Confidence 3455666777787777 56999999999999999986655443 5678888888998533
No 228
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=66.84 E-value=35 Score=33.20 Aligned_cols=57 Identities=30% Similarity=0.339 Sum_probs=42.1
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V 205 (347)
+.+...+.++++++| .+.|.-|.+++..|+.+|...+|.+. ....|...++.+|+.+
T Consensus 168 a~~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 168 GLELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 334445567777777 56799999999999999985444443 3678888889999854
No 229
>PRK08265 short chain dehydrogenase; Provisional
Probab=66.83 E-value=43 Score=30.60 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=42.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|--|.++|......|.+++++-... ....+..+..|.+++.+..+.+..+.+..+.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHH
Confidence 4678888889999999999999999877653321 112223344576776655444434555544443
No 230
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=66.82 E-value=51 Score=30.64 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
+.+.+.++.+.+|...+|.-|.+++..|+.+|.++++.... ..+++.++.+|++-+
T Consensus 132 ~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 187 (323)
T cd05282 132 EYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGADEV 187 (323)
T ss_pred HhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCCCEE
Confidence 33445667777777777999999999999999987655443 345667777887433
No 231
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=66.82 E-value=43 Score=31.26 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=42.8
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
+.+...+.++.+.+|...+|..|.+++..++..|.+++++.. ...+...++.+|++-+
T Consensus 154 ~l~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~~~ 211 (332)
T cd08259 154 ALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGADYV 211 (332)
T ss_pred HHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCcEE
Confidence 333355667778788888899999999999999998766653 3456666777887543
No 232
>PRK05717 oxidoreductase; Validated
Probab=66.80 E-value=42 Score=30.38 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=42.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
+++.+|+.++|.-|.++|......|.+++++-.. ........+..+.+++.+..+....+.+..+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD--RERGSKVAKALGENAWFIAMDVADEAQVAAGV 75 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC--HHHHHHHHHHcCCceEEEEccCCCHHHHHHHH
Confidence 3577888889999999999998899887765332 11122334455666666655444345554443
No 233
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=66.56 E-value=73 Score=29.27 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=41.9
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.+.++++.++...+|..|.+++..++.+|.++++... +..+.+.++.+|++.+.
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 189 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG---SDEKCAACEALGADIAI 189 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 34566677778777777899999999999999998655433 34455566778875443
No 234
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=66.52 E-value=72 Score=29.12 Aligned_cols=56 Identities=34% Similarity=0.459 Sum_probs=40.7
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.++.+.+|...+|..|.+++..|+.+|.+++++.. +..+.+.++.+|++-+.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGADHVI 186 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCCEEE
Confidence 355566677777766899999999999999988655432 55667777778875443
No 235
>PRK08862 short chain dehydrogenase; Provisional
Probab=66.38 E-value=33 Score=30.99 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=36.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEEC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTD 209 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~ 209 (347)
+..+|+..++.-|.++|......|.+++++-..... ....+.++..|.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 466788888889999999999999987765332211 112344666787776554
No 236
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=66.26 E-value=30 Score=30.72 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=40.1
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNT 228 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~ 228 (347)
+.+.-.|+|-+|.++|.++...|-.++++.....-+. -.|.+++.+.. .++-.+.+.+...+.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 5677888999999999999999999998887632111 35778888773 345555555555443
No 237
>PRK07035 short chain dehydrogenase; Provisional
Probab=66.03 E-value=37 Score=30.59 Aligned_cols=68 Identities=21% Similarity=0.115 Sum_probs=43.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.+++......|.+++++-..... ....+.+...|.++..+..+.+..+.++.+.+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFA 77 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 467888889999999999999999987766543111 12233445567776655544433444544443
No 238
>PLN02527 aspartate carbamoyltransferase
Probab=66.02 E-value=41 Score=32.39 Aligned_cols=52 Identities=15% Similarity=0.040 Sum_probs=40.1
Q ss_pred EEEEeCCC---hhHHHHHHHHHHc-CCcEEEEeCCC--CCHHHHHHHHhcCCEEEEEC
Q 019047 158 VLVEPTTG---NTGLGIAFVAAVK-GYKLIVTMPAS--TNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~assG---N~g~AlA~aa~~~-Gl~~~I~vp~~--~~~~~~~~l~~~GA~V~~~~ 209 (347)
.|+..+.+ |...+++.+++.+ |+.+++..|+. .+....+.++..|.++..++
T Consensus 153 kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 153 KVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred EEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 36666665 5799999998887 99999999986 45555666777888888775
No 239
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=66.01 E-value=45 Score=28.96 Aligned_cols=74 Identities=24% Similarity=0.269 Sum_probs=55.1
Q ss_pred CCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC---------CCCHHHHHHHHh
Q 019047 130 PCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA---------STNLERRILLRA 200 (347)
Q Consensus 130 ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~---------~~~~~~~~~l~~ 200 (347)
|+--+-++.....+.+|.+.|. +..||..++|-++.-++-+...- ++++++.-. .++.+-++.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 5555567777888899999987 56777888899988777765432 777765432 267888999999
Q ss_pred cCCEEEEE
Q 019047 201 FGAEIILT 208 (347)
Q Consensus 201 ~GA~V~~~ 208 (347)
.|++|..-
T Consensus 82 rGa~v~~~ 89 (186)
T COG1751 82 RGAKVLTQ 89 (186)
T ss_pred cCceeeee
Confidence 99999853
No 240
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=66.00 E-value=37 Score=30.27 Aligned_cols=68 Identities=24% Similarity=0.220 Sum_probs=44.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.+++......|.+++++.....+ ......++..|.++..+..+....+.+..+.+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVA 75 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 467888889999999999988889887666543211 22334556677777766554443445555443
No 241
>PLN02702 L-idonate 5-dehydrogenase
Probab=65.98 E-value=47 Score=32.01 Aligned_cols=59 Identities=31% Similarity=0.366 Sum_probs=43.9
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+...+.++++++|. ++|.-|.++...++.+|.+.++.+.. ...+...++.+|++.+.
T Consensus 173 ~~~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 173 ACRRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 3344455666676666 67999999999999999986555543 57788888899987654
No 242
>PRK07677 short chain dehydrogenase; Provisional
Probab=65.80 E-value=36 Score=30.73 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=42.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|.++|......|.+++++...... ......++..+.+++.+..+.+..+.++.+.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 70 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVE 70 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 467888888999999999998999977665433211 11223344556677666544333445544443
No 243
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=65.31 E-value=46 Score=30.30 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=40.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-hcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+.++|.-|.++|......|.+++++-. ...+.+.+. .+|.++..+..+.+..+.++.+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r---~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 70 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDK---SAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAV 70 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhhcCCceEEEEeccCCHHHHHHHH
Confidence 57788888899999999999999998776532 223333333 34666665554443344444443
No 244
>PRK06500 short chain dehydrogenase; Provisional
Probab=65.22 E-value=50 Score=29.51 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=36.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHH-HHHHhcCCEEEEECCC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR-ILLRAFGAEIILTDPE 211 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~-~~l~~~GA~V~~~~~~ 211 (347)
++.+|+..+|.-|.++|......|.+++++... ..+. ...+..|.+++.+..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~D 60 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIRAD 60 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEEec
Confidence 577888889999999999999999987665332 2222 3334568777655433
No 245
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=65.09 E-value=40 Score=31.91 Aligned_cols=56 Identities=36% Similarity=0.383 Sum_probs=39.8
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
..+.+.+++++++. ++|..|.++...|+.+|...++.+ ..+..+...++.+|++-+
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~v 216 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATDI 216 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcEE
Confidence 34556677787775 568899999999999997444444 335677778888886543
No 246
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.04 E-value=34 Score=30.68 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=44.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+++.++|--|.+++......|.++++....... ......++..|.++..+..+.+..+.++.+.+
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAK 76 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHH
Confidence 467888888999999999988899987765533211 23345566778887766544444444444443
No 247
>PRK07814 short chain dehydrogenase; Provisional
Probab=64.92 E-value=37 Score=30.99 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=43.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++|--|.++|......|.+++++...... ......++..|.++..+..+.+-.+.+..+.+..
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 577888889999999999988899987766543111 1122334445666665544444345555444433
No 248
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=64.92 E-value=34 Score=32.09 Aligned_cols=53 Identities=34% Similarity=0.531 Sum_probs=37.9
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~ 204 (347)
.+.+...+.++++++|...+|..|.+++..|+.+|.+++++. +.+.++.+|++
T Consensus 153 ~~l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~-------~~~~~~~~g~~ 205 (325)
T cd08264 153 HALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS-------RKDWLKEFGAD 205 (325)
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe-------HHHHHHHhCCC
Confidence 334445567777877777779999999999999999865543 23455667764
No 249
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=64.87 E-value=71 Score=28.51 Aligned_cols=53 Identities=38% Similarity=0.481 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V 205 (347)
.+.+.++.+.++...++ .|.+++..++..|.+++++.+ +..+.+.++.+|++.
T Consensus 129 ~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 181 (271)
T cd05188 129 AGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDR---SDEKLELAKELGADH 181 (271)
T ss_pred ccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHhCCce
Confidence 33345666766666666 999999999999977665544 345666677777543
No 250
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=64.68 E-value=64 Score=31.42 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=41.5
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V 205 (347)
...+.+.++++.+|. ++|.-|.+++..|+.+|++-++++. ....+++.++.+|++-
T Consensus 183 ~~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~~ 238 (373)
T cd08299 183 VNTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGATE 238 (373)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCce
Confidence 345556777776666 6899999999999999995444443 2567888888899853
No 251
>PRK07791 short chain dehydrogenase; Provisional
Probab=64.55 E-value=45 Score=31.12 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=43.6
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC----------CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS----------TNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~----------~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+++.+|+..++--|.++|......|.+++++.... ......+.++..|.+++.+..+.+..+.++.+.+
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 84 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD 84 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 35778888889999999999999999877764321 0112234455668787766544433344444443
No 252
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=64.13 E-value=39 Score=30.56 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=44.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++....... .....++..|.+++.+..+.+..+.+..+.+
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALAD 80 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 5778888899999999999889999887765432111 1233445567777665544443445544443
No 253
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=64.09 E-value=55 Score=30.20 Aligned_cols=51 Identities=27% Similarity=0.370 Sum_probs=39.4
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
++++.++...+|..|.+++..|+.+|.+++.... ...+...++.+|+....
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 182 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEVV 182 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 4677778777899999999999999998554432 45778888889986443
No 254
>PRK06198 short chain dehydrogenase; Provisional
Probab=63.68 E-value=55 Score=29.55 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=43.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|..+|......|.+.++.+..+... .....+...|.++..+..+.+-.+.+..+.+
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVA 76 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 4678888889999999999999999844444443221 2233556678888665544433445544443
No 255
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=63.59 E-value=59 Score=30.92 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=49.7
Q ss_pred cccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHc-CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC
Q 019047 113 VTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEES-GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN 191 (347)
Q Consensus 113 l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~-G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~ 191 (347)
.+++.|..|+-=.|..+...-+-+-.|...+..+.+. +.-..+ +.+...+.|+.|.++|..++.+|.+++++-..
T Consensus 108 ~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~g-k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~--- 183 (287)
T TIGR02853 108 LAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHG-SNVMVLGFGRTGMTIARTFSALGARVFVGARS--- 183 (287)
T ss_pred HHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCCC-CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---
Confidence 4455565555222222322222233344444444432 221223 45788888999999999999999876665442
Q ss_pred HHHHHHHHhcCCEE
Q 019047 192 LERRILLRAFGAEI 205 (347)
Q Consensus 192 ~~~~~~l~~~GA~V 205 (347)
..+......+|.+.
T Consensus 184 ~~~~~~~~~~g~~~ 197 (287)
T TIGR02853 184 SADLARITEMGLIP 197 (287)
T ss_pred HHHHHHHHHCCCee
Confidence 33445555566653
No 256
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=63.42 E-value=52 Score=27.01 Aligned_cols=65 Identities=29% Similarity=0.319 Sum_probs=40.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHH----HHHHHHhcCCEEEEECCCCChHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLE----RRILLRAFGAEIILTDPEKGLRGALDKA 221 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~----~~~~l~~~GA~V~~~~~~~~~~~a~~~a 221 (347)
+.+++..+|..|.+++......|...++++..+ .+.. ....++..|.++..+..+.+..+.+...
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAA 71 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 357778889999999999888887544444332 2211 1355566788887666544333444444
No 257
>PRK07904 short chain dehydrogenase; Provisional
Probab=63.36 E-value=55 Score=29.88 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=35.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHc-CCcEEEEeCCCCC--HHHHHHHHhcCC-EEEEEC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVK-GYKLIVTMPASTN--LERRILLRAFGA-EIILTD 209 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~-Gl~~~I~vp~~~~--~~~~~~l~~~GA-~V~~~~ 209 (347)
++.+|+.++|--|.++|...... |.+++++.....+ ....+.++..|. +++.+.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~ 66 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVID 66 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEE
Confidence 46788888899999999987777 4888777554322 122344555553 555544
No 258
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=63.35 E-value=32 Score=33.63 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=40.3
Q ss_pred EEEEeCC---ChhHHHHHHH-HHHcCCcEEEEeCCC--CCHHHHHHHHhcCCEEEEEC
Q 019047 158 VLVEPTT---GNTGLGIAFV-AAVKGYKLIVTMPAS--TNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~ass---GN~g~AlA~a-a~~~Gl~~~I~vp~~--~~~~~~~~l~~~GA~V~~~~ 209 (347)
.|+..+. +|.+.+++.. +..+|++++++-|+. .+..-.+.++..|+++..+.
T Consensus 161 kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 161 HIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred EEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 3566667 5889999976 667799999999986 35555667778899988776
No 259
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=63.26 E-value=46 Score=31.34 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=37.7
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVK-GYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~-Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+++++|...+|..|.+++..|+.+ |++++.... +..+.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~---~~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATAS---RPESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcC---cHHHHHHHHHcCCCEEE
Confidence 667777777899999999999988 988665544 34567777888986544
No 260
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=63.18 E-value=81 Score=30.00 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=38.6
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.++.+.++. ++|..|.+++..|+.+|.+.++++. .+..+...++.+|++.+.
T Consensus 174 ~~~~~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~~ 225 (350)
T cd08240 174 VADEPVVII-GAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVVV 225 (350)
T ss_pred CCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEEe
Confidence 355566665 6799999999999999996555553 357778888889986443
No 261
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=63.17 E-value=69 Score=30.98 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=41.2
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~ 204 (347)
+...+.++++.+|. ++|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 44556677787776 67999999999999999986555432 66778888889984
No 262
>PRK08264 short chain dehydrogenase; Validated
Probab=62.93 E-value=32 Score=30.66 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=39.2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl-~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|. +++++.... + +... +|.++..+..+....+.+..+.+
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~-~--~~~~---~~~~~~~~~~D~~~~~~~~~~~~ 69 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP-E--SVTD---LGPRVVPLQLDVTDPASVAAAAE 69 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh-h--hhhh---cCCceEEEEecCCCHHHHHHHHH
Confidence 4678888899999999999999998 766655432 2 1111 55566655443333344444443
No 263
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=62.92 E-value=79 Score=29.80 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=37.3
Q ss_pred CCCCCCeEEEEeCCChhHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKG-YKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 151 ~~~~g~~~vv~assGN~g~AlA~aa~~~G-l~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.+.++++.+|.. +|..|.+++..|+.+| .++++... ++.+.+.++.+|++-+
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~ 216 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHV 216 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEE
Confidence 345566766665 6679999999999999 77655433 3567778888997543
No 264
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.89 E-value=27 Score=34.06 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=44.3
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECC
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~ 210 (347)
++.|. .||+.. ...+.|-.|.---.+|+++|++++++=. .+..|.+.++.+||++.+.-.
T Consensus 175 k~~g~-~pG~~v-gI~GlGGLGh~aVq~AKAMG~rV~vis~--~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 175 KRSGL-GPGKWV-GIVGLGGLGHMAVQYAKAMGMRVTVIST--SSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred HHcCC-CCCcEE-EEecCcccchHHHHHHHHhCcEEEEEeC--CchhHHHHHHhcCcceeEEec
Confidence 44554 488764 5555544888888899999999998744 245678899999999987653
No 265
>PRK07985 oxidoreductase; Provisional
Probab=62.64 E-value=46 Score=31.25 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=43.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC-CCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA-STN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~-~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+..+|.-|.++|......|.++++.... +.. ......++..|.+++.+..+.+..+.+..+.+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHH
Confidence 467888888999999999999999998765332 111 112233455677776655444444555555443
No 266
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=62.60 E-value=51 Score=31.34 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=38.1
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 152 ~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.++.+.+|. +.|..|.+++..|+.+|++++++.. +..+...++.+|++-+.
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSR---SPSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEe
Confidence 5666777775 5799999999999999997555433 34566777788976544
No 267
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=62.57 E-value=49 Score=29.72 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=43.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+.+|+.++|.-|.++|......|.+++++-..... ....+.++..|.++..+..+....+.+..+.+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~ 69 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAID 69 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 46788888999999999998999987665433111 12234556678777766554444455555443
No 268
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=62.35 E-value=89 Score=30.06 Aligned_cols=54 Identities=31% Similarity=0.433 Sum_probs=39.0
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~ 204 (347)
+.+.+.++.+++|. ++|..|.+++..|+.+|.+.++++.. +..+...++.+|++
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 34456667777777 67999999999999999874444432 45566777788874
No 269
>PRK06138 short chain dehydrogenase; Provisional
Probab=62.18 E-value=53 Score=29.39 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=41.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|......|.+++++...... ......+. .|.++..+..+.+..+.++++.+
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 73 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVD 73 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHH
Confidence 467899999999999999988889886665433211 11222333 57777666544443455555444
No 270
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=62.17 E-value=30 Score=34.99 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=39.8
Q ss_pred EEEEeCC---ChhHHHHHHHHHHc-CCcEEEEeCCCC--CHHHHHHHHhcCCEEEEEC
Q 019047 158 VLVEPTT---GNTGLGIAFVAAVK-GYKLIVTMPAST--NLERRILLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~ass---GN~g~AlA~aa~~~-Gl~~~I~vp~~~--~~~~~~~l~~~GA~V~~~~ 209 (347)
.|+..+. +|.+.+++..++.+ |++++++-|+.. +...+..++..|+.|..++
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 3566666 58999999996665 999999999864 4455666777799888765
No 271
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=61.84 E-value=49 Score=30.22 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=38.8
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHhcC
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK-LIVTMPASTNLERRILLRAFG 202 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~-~~I~vp~~~~~~~~~~l~~~G 202 (347)
+.+.+.+.++++.++. +.|..|.++...|+.+|.+ ++++ . .+..+...++.+|
T Consensus 89 ~~~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~-~--~~~~~~~~~~~~g 142 (277)
T cd08255 89 GVRDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV-D--PDAARRELAEALG 142 (277)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE-C--CCHHHHHHHHHcC
Confidence 3445566777777776 5799999999999999998 4443 2 3566677778888
No 272
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=61.73 E-value=69 Score=30.07 Aligned_cols=56 Identities=29% Similarity=0.360 Sum_probs=40.6
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~ 204 (347)
+.+...+.++.+.++. ++|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 151 ~l~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 151 GLDLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 3344556677777776 57899999999999999984444433 45667777888886
No 273
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=61.60 E-value=90 Score=29.17 Aligned_cols=56 Identities=32% Similarity=0.490 Sum_probs=40.5
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.+.+.++.++++. ++|..|.+++..|+.+|+++++..+ +..+.+.++.+|++-+..
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLN 215 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEc
Confidence 4456667777775 5788999999999999998544433 456777778889865443
No 274
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=61.59 E-value=37 Score=30.57 Aligned_cols=47 Identities=28% Similarity=0.344 Sum_probs=29.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEEC
Q 019047 163 TTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTD 209 (347)
Q Consensus 163 ssGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~ 209 (347)
+++.-|.++|......|.++++.-..... .......+.+|.+++.++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D 52 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCD 52 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESC
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeec
Confidence 34667888888888888887776554322 122344456777775555
No 275
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=61.37 E-value=1.1e+02 Score=27.97 Aligned_cols=56 Identities=32% Similarity=0.518 Sum_probs=39.4
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.++...++...+|..|.+++..++.+|.+++++.. +..+.+.++.+|++.+.
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 189 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAAS---SEEKLALARALGADHVI 189 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeC---CHHHHHHHHHcCCceee
Confidence 345566677777766799999999999999998554433 34556666777875443
No 276
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=61.15 E-value=45 Score=29.87 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=43.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|--|.+++......|.+++++....... .....++..+.++..+..+....+.+..+.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 70 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIA 70 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 3568888899999999999888999877765542111 1122344557777766544433444444443
No 277
>PRK07774 short chain dehydrogenase; Provisional
Probab=61.09 E-value=58 Score=29.11 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=42.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|......|.+++++....... ...+.++..+.+++.+..+.+..+.++.+.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMAD 75 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 4678888889999999999999999887765432111 1223344456666555443333344444433
No 278
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.97 E-value=66 Score=29.44 Aligned_cols=70 Identities=21% Similarity=0.167 Sum_probs=40.0
Q ss_pred CeEEEEeCC--ChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-Hhc-CCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAF-GAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~-GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++ +.-|.++|..-...|.++++.-.......+++.+ +.. |.+++.+..|.+..+.++.+.+..
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHH
Confidence 455666654 6899999999888999877654322222333333 222 556665544443345555554433
No 279
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=60.96 E-value=53 Score=30.29 Aligned_cols=54 Identities=24% Similarity=0.444 Sum_probs=40.1
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.+.+.++.+.++...+|..|.+++..|+.+|++++++.+ + .+.+.++.+|++-+
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~---~-~~~~~~~~~g~~~~ 191 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCS---T-RNAELVRSLGADEV 191 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC---H-HHHHHHHHcCCCEe
Confidence 344566777777777799999999999999998665543 2 66777788887433
No 280
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.96 E-value=42 Score=30.53 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=43.4
Q ss_pred CeEEEEeCC--ChhHHHHHHHHHHcCCcEEEEeC----CCC----CH----HHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 019047 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMP----AST----NL----ERRILLRAFGAEIILTDPEKGLRGALDKA 221 (347)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp----~~~----~~----~~~~~l~~~GA~V~~~~~~~~~~~a~~~a 221 (347)
++.+|+.++ +.-|.++|......|.++++... .+. .. ...+.++..|.+++.+..+.+..+.+..+
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~ 86 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKEL 86 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 455666665 47999999999999998777531 110 11 22345667798887766544444555555
Q ss_pred HHHH
Q 019047 222 EEIV 225 (347)
Q Consensus 222 ~~~a 225 (347)
.+.+
T Consensus 87 ~~~~ 90 (256)
T PRK12859 87 LNKV 90 (256)
T ss_pred HHHH
Confidence 4443
No 281
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=60.96 E-value=40 Score=30.25 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=44.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|..-...|.++++....+.. ......++.++.+++.+..+.+..+.+..+.+
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 72 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFD 72 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHH
Confidence 356888888999999999988899987765443321 12344566678888766544433344444443
No 282
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=60.96 E-value=59 Score=29.31 Aligned_cols=63 Identities=25% Similarity=0.235 Sum_probs=39.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HhcCCEEEEECCCCChHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
+.+|+.++|..|.++|......|.+++++... ..+...+ ...|.+++.+..+....+.+..+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~ 65 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQLDVRNRAAIEEML 65 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEecCCCHHHHHHHH
Confidence 45788888999999999999999987765432 2333333 334666665554333334444443
No 283
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=60.94 E-value=1.5e+02 Score=28.03 Aligned_cols=118 Identities=13% Similarity=0.074 Sum_probs=62.4
Q ss_pred EEEeCCChhHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGY--KLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl--~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
|..-+.|+.|.++|...+..|. +++++-+ ++.+.+.++..|....... +..+ ..++ .+..++.-
T Consensus 9 I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr---~~~~~~~a~~~g~~~~~~~---~~~~-------~~~~-aDvViiav 74 (307)
T PRK07502 9 VALIGIGLIGSSLARAIRRLGLAGEIVGADR---SAETRARARELGLGDRVTT---SAAE-------AVKG-ADLVILCV 74 (307)
T ss_pred EEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC---CHHHHHHHHhCCCCceecC---CHHH-------HhcC-CCEEEECC
Confidence 6666899999999999998886 4444433 4456666777776433222 1111 1222 24444321
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhc-CCCCeEEEEcCCCCc
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEPAERS 300 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVep~~~~ 300 (347)
+.. ....+..++...+ +++.+|+.+|+-. ..+...+... ...+++++.-|...+
T Consensus 75 ---p~~---~~~~v~~~l~~~l--~~~~iv~dvgs~k--~~~~~~~~~~~~~~~~~v~~hPm~g~ 129 (307)
T PRK07502 75 ---PVG---ASGAVAAEIAPHL--KPGAIVTDVGSVK--ASVIAAMAPHLPEGVHFIPGHPLAGT 129 (307)
T ss_pred ---CHH---HHHHHHHHHHhhC--CCCCEEEeCccch--HHHHHHHHHhCCCCCeEEeCCCCCCC
Confidence 111 1122334444333 4556777776533 2233333332 235688888886543
No 284
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=60.92 E-value=34 Score=32.89 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=42.3
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHH-HHhcCCEEEEEC
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRIL-LRAFGAEIILTD 209 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~-l~~~GA~V~~~~ 209 (347)
+.|.+. |.++.++.-.+|..++++..++.+|+++.+.-|+... ...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 345443 3344444444899999999999999999999998633 233333 567899988765
No 285
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=60.85 E-value=63 Score=31.49 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=37.8
Q ss_pred EEEeCC--ChhHHHHHHHHHHcCCcEEEEeCCCC--CHHHHH----HHHhcCCEEEEEC
Q 019047 159 LVEPTT--GNTGLGIAFVAAVKGYKLIVTMPAST--NLERRI----LLRAFGAEIILTD 209 (347)
Q Consensus 159 vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp~~~--~~~~~~----~l~~~GA~V~~~~ 209 (347)
|+..+. .|.+++++.+++.+|++++++.|+.. +...+. ..+..|+++..+.
T Consensus 158 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 158 FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred EEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 555566 48999999999999999999999853 333332 2346799988765
No 286
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=60.48 E-value=74 Score=28.26 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=44.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
+.+|+.++|.-|.+++......|.+++++...+.. ......++..|.++..+..+....+.+..+.+..
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~ 73 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAI 73 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 56888888999999999988899987765544322 1223345666777766655444345555554433
No 287
>PLN02342 ornithine carbamoyltransferase
Probab=60.43 E-value=33 Score=33.68 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=41.0
Q ss_pred cCCCCCCCeEEEEeCC-ChhHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHhcCC-EEEEEC
Q 019047 149 SGDITPGKTVLVEPTT-GNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGA-EIILTD 209 (347)
Q Consensus 149 ~G~~~~g~~~vv~ass-GN~g~AlA~aa~~~Gl~~~I~vp~~~--~~~~~~~l~~~GA-~V~~~~ 209 (347)
.|.+. |.+ |+..+. .|..++++.+++.+|++++++-|+.. +...++.++.+|. ++..++
T Consensus 189 ~G~l~-glk-va~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 189 IGRLE-GTK-VVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred hCCcC-CCE-EEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 45433 334 444455 58999999999999999999999863 4445566666775 776654
No 288
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=60.36 E-value=21 Score=34.75 Aligned_cols=54 Identities=26% Similarity=0.178 Sum_probs=42.1
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~ 210 (347)
..++..++|..+.-+|+.+..++=.-.|++|.-.-......+...|+++++++-
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDI 94 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-B
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEec
Confidence 568999999999999998833333377888988888899999999999999984
No 289
>PRK09291 short chain dehydrogenase; Provisional
Probab=60.27 E-value=30 Score=31.22 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=36.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHhcCCEEEEECC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDP 210 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~-~~~~l~~~GA~V~~~~~ 210 (347)
++.+|+.++|.-|.+++......|.+++++........ ....+...|.++..+..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKL 58 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEe
Confidence 36788999999999999999999999887665421111 12233445655555443
No 290
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.19 E-value=59 Score=28.86 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=42.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+.++|.-|.++|......|.++++....+... .....+...|.++..+..+.+..+.+..+.
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLV 74 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 4678888899999999999888899877763433221 122334445777766655444344444443
No 291
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=60.18 E-value=89 Score=25.67 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=49.1
Q ss_pred HHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHH
Q 019047 171 IAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDS 249 (347)
Q Consensus 171 lA~aa~~~Gl~~~I~vp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~t 249 (347)
|+...+..+.+..|+..... ...........+.+++.= ...++.+.+..|.+.+.+.-....+-+.+-|..-. .
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~--- 76 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-D--- 76 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-H---
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-H---
Confidence 34556667888888776543 333333355566666654 33468888888888774332455566666665432 2
Q ss_pred HHHHHHHhhCCCCCEEEEecCcch
Q 019047 250 TGPEIWEDTLGCVDIFVAAIGTGG 273 (347)
Q Consensus 250 i~~Ei~~ql~~~~D~vv~pvG~Gg 273 (347)
.-.+.++.| ...|.|+.|+--||
T Consensus 77 ~l~~A~~~L-~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 77 DLEQAFEAL-QRHDVVLGPAEDGG 99 (122)
T ss_dssp HHHHHHHHT-TT-SEEEEEBTTSS
T ss_pred HHHHHHHHh-ccCCEEEeeccCCC
Confidence 222344444 34499999988766
No 292
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=60.04 E-value=20 Score=37.31 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=41.1
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC------------------CCHHHHHHHHhcCCEEEE
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS------------------TNLERRILLRAFGAEIIL 207 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~------------------~~~~~~~~l~~~GA~V~~ 207 (347)
.+|++ |+..++|..|.+.|.+++.+|.+++|+=... ....+++.++.+|++++.
T Consensus 135 ~~g~~-V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 135 DTGKR-VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 34444 8999999999999999999999987763221 234567778889998765
No 293
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=59.82 E-value=40 Score=32.42 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=41.3
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHhcCCEEEEEC
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRIL----LRAFGAEIILTD 209 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~--~~~~~~~----l~~~GA~V~~~~ 209 (347)
.|.+. |.++.+..-.+|..++++.+++.+|+++.++.|+.. +....+. .+..|+++...+
T Consensus 143 ~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 143 FGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred hCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 45432 334334433379999999999999999999999853 3333333 355799988765
No 294
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=59.80 E-value=54 Score=31.17 Aligned_cols=52 Identities=31% Similarity=0.478 Sum_probs=38.9
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.++.+++|. ++|..|.+++..|+.+|.+.+++. ..+..|....+.+|++-+.
T Consensus 162 ~~g~~vlV~-g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~ 213 (341)
T cd05281 162 VSGKSVLIT-GCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVVI 213 (341)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcceee
Confidence 466777775 469999999999999998644555 3466788888889985443
No 295
>PRK06101 short chain dehydrogenase; Provisional
Probab=59.75 E-value=59 Score=29.18 Aligned_cols=64 Identities=20% Similarity=0.127 Sum_probs=40.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+.+|+.++|.-|.++|..-...|.+++++.. +..+.+.+...+.++..+..+.+..+.++.+.+
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 66 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGR---NQSVLDELHTQSANIFTLAFDVTDHPGTKAALS 66 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHH
Confidence 5688888999999999998889999776644 234455554445445444433333445555443
No 296
>PLN02253 xanthoxin dehydrogenase
Probab=59.70 E-value=46 Score=30.62 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=27.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
++.+|+.++|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 46788888999999999998889998777643
No 297
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=59.65 E-value=76 Score=29.49 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=37.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+++|...+|..|.+++..|+.+|.+++++.. +..+++.++.+|++-+.
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 196 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEVL 196 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 46666666799999999999999998554433 45677888889985443
No 298
>PLN02827 Alcohol dehydrogenase-like
Probab=59.62 E-value=67 Score=31.41 Aligned_cols=57 Identities=25% Similarity=0.414 Sum_probs=42.3
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+.+|++.+|. ++|--|.+++..|+.+|.+.++.+.. .+.|.+.++.+|++-+.
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 34556777776666 57999999999999999875554432 56788888999996543
No 299
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.47 E-value=74 Score=28.45 Aligned_cols=66 Identities=23% Similarity=0.214 Sum_probs=40.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+.++|.-|.++|..-...|.++++...... .........++.++..+..+....+.+..+.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE-DAAEALADELGDRAIALQADVTDREQVQAMF 71 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHhCCceEEEEcCCCCHHHHHHHH
Confidence 46788888999999999998889998877554322 1112233344556655543333234444443
No 300
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.18 E-value=1.8e+02 Score=28.24 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=28.1
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
.|..-++|..|.++|..+...|++++++=+.
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4778899999999999999999999998775
No 301
>PLN02583 cinnamoyl-CoA reductase
Probab=58.99 E-value=60 Score=30.44 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=29.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
+++.+|+..+|.-|.+++......|.++++++..
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3577888889999999999999999999887754
No 302
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=58.92 E-value=1.1e+02 Score=28.15 Aligned_cols=57 Identities=25% Similarity=0.428 Sum_probs=42.7
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.+.++...++...+|..|.+++..++.+|+++++... + .+.+.++.+|++-+..
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~~ 194 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPIIY 194 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEEe
Confidence 4566667778777777899999999999999998665543 3 5667777889865443
No 303
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.78 E-value=75 Score=28.30 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=40.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~-~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+.++|.-|.+++......|.+++++........ ....++. |.++..+..+....+.++.+.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~ 72 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAV 72 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHH
Confidence 47788888999999999998889999766654321111 1222333 566666654443334444443
No 304
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=58.78 E-value=85 Score=30.66 Aligned_cols=58 Identities=34% Similarity=0.409 Sum_probs=41.6
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhc-CCEEE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAF-GAEII 206 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~-GA~V~ 206 (347)
+.+.+.+.++.+.++. ++|-.|.+++..|+..|...+|.+.. .+.+++.++.+ |++++
T Consensus 176 ~l~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 176 AAELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETI 234 (386)
T ss_pred HHhhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEE
Confidence 3345556677776666 67988999999999999864555543 46788888888 66544
No 305
>PRK07775 short chain dehydrogenase; Provisional
Probab=58.76 E-value=65 Score=29.64 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=43.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|.+++......|.+++++....... .-...++..|.++..+..+.+..+.+..+.+
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVA 79 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 4667888889999999999888999876665432111 1123455668888766654443445544444
No 306
>PRK09072 short chain dehydrogenase; Provisional
Probab=58.68 E-value=55 Score=29.73 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=41.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~-~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++|-.|.++|......|.+++++........ ....+ ..+.++..+..+....+.+..+.+..
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHH
Confidence 56788888999999999999899998777654321111 11222 24666666554333334444444433
No 307
>PRK07062 short chain dehydrogenase; Provisional
Probab=58.54 E-value=68 Score=29.12 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=42.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHH-HHHHHh-c-CCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER-RILLRA-F-GAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~-~~~l~~-~-GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++|.-|.++|......|.+++++........+ .+.+.. + +.+++.+..+.+..+.++.+.+..
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 577888888999999999999999997766553221111 222322 3 457765554443345555554433
No 308
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=58.22 E-value=1.1e+02 Score=29.04 Aligned_cols=52 Identities=27% Similarity=0.422 Sum_probs=38.5
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~ 204 (347)
.+.+.++++.+|.. +|..|.++...|+.+|+++++... +..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCCC
Confidence 34455666777766 799999999999999998665543 45567777778873
No 309
>PRK08339 short chain dehydrogenase; Provisional
Probab=58.11 E-value=57 Score=29.95 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=41.7
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHH-hcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLR-AFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
+++.+|+.++|.-|.++|......|.+++++-...... ...+.++ ..|.++..+..+.+..+.++.+.+..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 35678888889999999999999999877764331111 1122222 23666655543333344454444433
No 310
>PRK14030 glutamate dehydrogenase; Provisional
Probab=57.98 E-value=59 Score=33.10 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEE--------EeCCCCCHHH
Q 019047 135 KDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV--------TMPASTNLER 194 (347)
Q Consensus 135 K~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I--------~vp~~~~~~~ 194 (347)
=-+|..+.+..+.+..-.....+.|+.-+.||-|..+|.....+|.+++. +-|+..+..+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH
Confidence 34677777776654332233345689999999999999999999998887 4444455544
No 311
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=57.54 E-value=88 Score=29.80 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=36.2
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.+..-+.|..|.+++..++.+|.+++++-. .+.+....+.+|++.+
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r---~~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGAR---KSAHLARITEMGLSPF 199 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHcCCeee
Confidence 477778899999999999999987766644 3556777788898764
No 312
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.51 E-value=83 Score=27.76 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=43.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHH--HHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE--RRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~--~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+..+|.-|.+++......|.+++++...+.... ..+.++..+.++..+..+....+.+..+.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 75 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAV 75 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHH
Confidence 46788888999999999999899998776555433221 23344556777766654443334444443
No 313
>PRK09242 tropinone reductase; Provisional
Probab=57.33 E-value=65 Score=29.10 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=42.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHhc--CCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAF--GAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~~~--GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|.++|......|.+++++....... .....++.. |.+++.+..+....+.+..+.+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILD 80 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHH
Confidence 4678888889999999999989999876665432111 112233333 6788776655443445544444
No 314
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=57.09 E-value=58 Score=31.61 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=37.8
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+...+|++.+| .++|.-|.+++..|+.+|.+++++... +..+....+.+|++.+.
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEE
Confidence 34456667666 677999999999999999985554332 23334556789996554
No 315
>PRK05650 short chain dehydrogenase; Provisional
Probab=57.03 E-value=66 Score=29.39 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=42.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
+.+|+.++|.-|.++|..-...|.+++++...... ......++..|.+++.+..+....+.++.+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 68 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALA 68 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 45788889999999999988899998776543221 2223445666777766654443334444443
No 316
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=56.84 E-value=1.3e+02 Score=26.79 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=38.8
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCC
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGA 203 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA 203 (347)
+.+.+.++.+.++...+|-.|.+++..++.+|.++++..+ +..+...++.+|+
T Consensus 98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~ 150 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAG---SPEKRDFLRELGI 150 (288)
T ss_pred HHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCC
Confidence 4445666777667666899999999999999997554433 4556777778887
No 317
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=56.56 E-value=74 Score=31.04 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=38.7
Q ss_pred EEEEeCCC--hhHHHHHHHHHHcCCcEEEEeCCCC--CHHHHH----HHHhcCCEEEEEC
Q 019047 158 VLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPAST--NLERRI----LLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~assG--N~g~AlA~aa~~~Gl~~~I~vp~~~--~~~~~~----~l~~~GA~V~~~~ 209 (347)
.|+..+.+ |..++++..++.+|+++.++.|+.. +...+. ..+..|.++..++
T Consensus 157 ~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 157 KLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred EEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 35666775 8999999999999999999999863 333333 2345799888765
No 318
>PRK06123 short chain dehydrogenase; Provisional
Probab=56.51 E-value=73 Score=28.41 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=43.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++|.-|.++|..-...|..+++....+.. ......+...|.+++.+..+.+..+.+..+.+..
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAV 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHH
Confidence 366888888999999999888889876554322211 1223345566777766654444345555554433
No 319
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=56.44 E-value=96 Score=30.24 Aligned_cols=55 Identities=29% Similarity=0.495 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.++++++|. +.|.-|.+++..|+.+|...++.+.. ...+...++.+|++-+.
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 456777777777 67999999999999999854444432 34478888999985543
No 320
>PRK06182 short chain dehydrogenase; Validated
Probab=56.22 E-value=1.4e+02 Score=27.25 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=42.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++... ..+++.+...+.+++..+-. ..+.++.+.+
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~--~~~~~~~~~~ 66 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT--DEASIKAAVD 66 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC--CHHHHHHHHH
Confidence 467888888999999999988899988776543 34455555567777666532 2344444433
No 321
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=55.87 E-value=50 Score=26.62 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCC-ChHHH
Q 019047 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK-GLRGA 217 (347)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~-~~~~a 217 (347)
+...+..|...+. +.+++.+.+|++++.+|.+- -..+.+++.+. +...+++.-.+|..-+..+... +.++.
T Consensus 5 a~aa~~~A~~~~a----k~Ivv~T~sG~ta~~isk~R--P~~pIiavt~~--~~~~r~l~l~~GV~p~~~~~~~~~~~~~ 76 (117)
T PF02887_consen 5 ARAAVELAEDLNA----KAIVVFTESGRTARLISKYR--PKVPIIAVTPN--ESVARQLSLYWGVYPVLIEEFDKDTEEL 76 (117)
T ss_dssp HHHHHHHHHHHTE----SEEEEE-SSSHHHHHHHHT---TSSEEEEEESS--HHHHHHGGGSTTEEEEECSSHSHSHHHH
T ss_pred HHHHHHHHHhcCC----CEEEEECCCchHHHHHHhhC--CCCeEEEEcCc--HHHHhhhhcccceEEEEeccccccHHHH
Confidence 3444455555554 45667777788888777652 23555555553 2233333345677776666433 45566
Q ss_pred HHHHHHHHHcC
Q 019047 218 LDKAEEIVLNT 228 (347)
Q Consensus 218 ~~~a~~~a~~~ 228 (347)
++.+.+.+.+.
T Consensus 77 ~~~a~~~~~~~ 87 (117)
T PF02887_consen 77 IAEALEYAKER 87 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 66666666554
No 322
>PRK12827 short chain dehydrogenase; Provisional
Probab=55.79 E-value=92 Score=27.63 Aligned_cols=68 Identities=21% Similarity=0.136 Sum_probs=44.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC-CHHH----HHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLER----RILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~-~~~~----~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|......|.+++++..... ...+ ...+...|.++..+..+....+.+..+.+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALD 79 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 46788888999999999998889998777543211 1222 23445667787766655444455555544
No 323
>PRK06924 short chain dehydrogenase; Provisional
Probab=55.72 E-value=71 Score=28.64 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=39.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKA 221 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a 221 (347)
+.+|+.++|.-|.++|......|.+++++.... ........+..+.+++.+..+.+..+.+...
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE-NKELTKLAEQYNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc-hHHHHHHHhccCCceEEEEecCCCHHHHHHH
Confidence 567888889999999999888999877664432 2222333344566665554433323444333
No 324
>PRK07856 short chain dehydrogenase; Provisional
Probab=55.60 E-value=59 Score=29.35 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=39.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|......|.+++++.... . + ...+.++..+..+....+.+.++.+
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~-~--~----~~~~~~~~~~~~D~~~~~~~~~~~~ 67 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA-P--E----TVDGRPAEFHAADVRDPDQVAALVD 67 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh-h--h----hhcCCceEEEEccCCCHHHHHHHHH
Confidence 5778888899999999999888999877765432 1 1 2345555554443333444544443
No 325
>PRK06180 short chain dehydrogenase; Provisional
Probab=55.28 E-value=80 Score=29.06 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=41.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-hcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|.-|.+++......|.+++++... ..+...+. ..+.++..+..+.+..+.+..+.+.
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~ 71 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRS---EAARADFEALHPDRALARLLDVTDFDAIDAVVAD 71 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC---HHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHH
Confidence 467888889999999999998899997776542 23333333 3444555544434334555554443
No 326
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=55.26 E-value=38 Score=28.84 Aligned_cols=57 Identities=25% Similarity=0.190 Sum_probs=40.5
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
+|...+|+.|..++......|.++++++....+... ..+.+++..+- ...+.+..+.
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~--~d~~~~~~al 58 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDL--FDPDSVKAAL 58 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCT--TCHHHHHHHH
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeee--hhhhhhhhhh
Confidence 577778999999999999999999999987543333 56667666553 2234454443
No 327
>PRK08251 short chain dehydrogenase; Provisional
Probab=55.25 E-value=77 Score=28.33 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=41.2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHhc--CCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAF--GAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~-~~~~l~~~--GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|..-...|.++++......... ....+... |.+++.+..+.+-.+.+..+.+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFA 73 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHH
Confidence 46788888999999999998888987666544321111 11222222 7778776654443444544444
No 328
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=55.25 E-value=80 Score=28.68 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=42.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHH-hcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLR-AFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.+++.-|.++|......|.++++....+.+. ...+.++ ..|.++..+..+.+..+.++.+.+.
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 5778888889999999999989999877654432211 1122232 3577776665444434455544443
No 329
>PRK12747 short chain dehydrogenase; Provisional
Probab=55.11 E-value=57 Score=29.38 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=37.2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDP 210 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~ 210 (347)
++.+|+.++|--|.++|......|.++++....... ......++..|.+++.+..
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGA 61 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEec
Confidence 577888889999999999999999988775322211 1223445556766665543
No 330
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.04 E-value=87 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=24.4
Q ss_pred CeEEEEeCC--ChhHHHHHHHHHHcCCcEEEEeC
Q 019047 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
+..+|+.++ +.-|.++|......|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 455666665 57999999999999999776643
No 331
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=55.03 E-value=78 Score=33.08 Aligned_cols=50 Identities=28% Similarity=0.239 Sum_probs=33.3
Q ss_pred CeEEEEeCCChhH---HHHHHHHHHcCCcEEEEeCCCCCHH----HHHHHHhcCCEE
Q 019047 156 KTVLVEPTTGNTG---LGIAFVAAVKGYKLIVTMPASTNLE----RRILLRAFGAEI 205 (347)
Q Consensus 156 ~~~vv~assGN~g---~AlA~aa~~~Gl~~~I~vp~~~~~~----~~~~l~~~GA~V 205 (347)
.+++|.++.||.| ..+|.....+|+++.|+++...+.. ...+++.+|..+
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 3678888888664 4566666667999999998643332 234566667554
No 332
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=54.95 E-value=67 Score=30.56 Aligned_cols=50 Identities=30% Similarity=0.429 Sum_probs=38.2
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.++++.+|...+|..|.+++..|+.+|.+++... + ..+...++.+|++-+
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~--~--~~~~~~~~~~g~~~v 202 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA--S--PKNFDLVKSLGADAV 202 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE--C--cccHHHHHhcCCCEE
Confidence 5667777777789999999999999999866543 2 267777788998443
No 333
>PRK12828 short chain dehydrogenase; Provisional
Probab=54.77 E-value=90 Score=27.43 Aligned_cols=55 Identities=20% Similarity=0.097 Sum_probs=38.8
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEEC
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTD 209 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~ 209 (347)
+++.+|+.++|--|.++|......|.+++++.....+ ......+...+.+++..+
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D 62 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGID 62 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEee
Confidence 3578888889999999999988889997766553222 122344556677777665
No 334
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=54.76 E-value=1.3e+02 Score=31.04 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=77.3
Q ss_pred eEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Q 019047 120 NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR 199 (347)
Q Consensus 120 ~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~ 199 (347)
.+-++.|+.+-|.+-=.-.+..++.-.+..| +++|+++-+.+.---+=.-..++|++.|+-.+-+=|.-.+.+.+.-|+
T Consensus 68 a~Vf~~eg~R~Tf~~~~~ev~slAaGll~lG-L~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~ 146 (596)
T KOG1177|consen 68 AAVFDHEGIRLTFSEFVSEVESLAAGLLSLG-LKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLK 146 (596)
T ss_pred EEEEeeccchhhHHHHHHHHHHHHhhHHhhc-CCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHh
Confidence 4667889998876654556666667777777 466677666666555557778889999997777777778888899999
Q ss_pred hcCCEEEEECCCC---ChHH-HHHHHHHHHHcCC
Q 019047 200 AFGAEIILTDPEK---GLRG-ALDKAEEIVLNTP 229 (347)
Q Consensus 200 ~~GA~V~~~~~~~---~~~~-a~~~a~~~a~~~~ 229 (347)
..|.++.+.+..+ +|.+ ..+.+-|+....+
T Consensus 147 k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~ 180 (596)
T KOG1177|consen 147 KVGCKALFAPPQFKTQNYYETLLEICPEVMRGDP 180 (596)
T ss_pred hcCeEEEEccchhhhchHHHHHHHhhHHhhcCCC
Confidence 9999999988643 1222 3455555555443
No 335
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=54.70 E-value=44 Score=28.78 Aligned_cols=50 Identities=30% Similarity=0.331 Sum_probs=40.6
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
..++..++||-|...+.++..+|.+.+++- ..+.+++..+..++..+.++
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d---~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPD---ERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEE---SSHHHHHHHHHTTTEESEET
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEecc---CCHHHHHhhhcccCceEEEc
Confidence 358999999999999999999999877652 36778888899999888775
No 336
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.62 E-value=93 Score=28.09 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=41.5
Q ss_pred CeEEEEeCC--ChhHHHHHHHHHHcCCcEEEEeCC-----------CCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 019047 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPA-----------STNL-ERRILLRAFGAEIILTDPEKGLRGALDKA 221 (347)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp~-----------~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a 221 (347)
++.+|+..+ |.-|.++|..-...|.+++++... .... .....++.+|.+++.+..+....+.+..+
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 85 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRV 85 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 355666655 479999999988889987776443 1111 12234556788887776554444455444
Q ss_pred HHH
Q 019047 222 EEI 224 (347)
Q Consensus 222 ~~~ 224 (347)
.+.
T Consensus 86 ~~~ 88 (256)
T PRK12748 86 FYA 88 (256)
T ss_pred HHH
Confidence 443
No 337
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=54.52 E-value=72 Score=28.56 Aligned_cols=60 Identities=20% Similarity=0.084 Sum_probs=40.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|.++|......|.+++++.... ++..+.++..+..+....+.++++.+
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~~ 68 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--------LTQEDYPFATFVLDVSDAAAVAQVCQ 68 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--------hhhcCCceEEEEecCCCHHHHHHHHH
Confidence 5678888889999999999888999988875543 33445556555443333445555443
No 338
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=54.51 E-value=35 Score=26.48 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCC
Q 019047 260 GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAER 299 (347)
Q Consensus 260 ~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~ 299 (347)
...|.+|.-+..|..+-.++..++.+..++-|+.|++++.
T Consensus 10 ~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~ 49 (84)
T PF11760_consen 10 RRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGR 49 (84)
T ss_dssp CC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--
T ss_pred cCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCC
Confidence 4578899888899999999999999999999999999886
No 339
>PRK06720 hypothetical protein; Provisional
Probab=54.49 E-value=1e+02 Score=26.63 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=32.2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHhcCCEEEEEC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTD 209 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~-~~~~l~~~GA~V~~~~ 209 (347)
+..+++..+|--|.++|......|.+++++-....... ....+...|.++..+.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~ 71 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVS 71 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 46677777778999999888888887666543321111 1233444565554443
No 340
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=54.48 E-value=65 Score=30.50 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=37.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
|++.+|...+|..|.+++..|+.+|+++++.... .+...++.+|++-+.
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~~~ 211 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADDVI 211 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCceEE
Confidence 6777777778999999999999999986654432 366777888875443
No 341
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=54.45 E-value=67 Score=31.82 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=28.9
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~ 189 (347)
+|-.-++|+.|+.++.+|+.+|++++|+-|..
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~ 34 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDA 34 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCC
Confidence 46778899999999999999999999999863
No 342
>PRK07063 short chain dehydrogenase; Provisional
Probab=54.40 E-value=79 Score=28.57 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=41.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHh--cCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRA--FGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~--~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|..-...|.+++++...... ......++. .|.++..+..+.+..+.++.+.+
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVA 78 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHH
Confidence 467888888999999999988899987766443211 112233333 46666655544433344444433
No 343
>PLN02256 arogenate dehydrogenase
Probab=54.32 E-value=2e+02 Score=27.47 Aligned_cols=156 Identities=10% Similarity=0.052 Sum_probs=79.6
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
.+..-+.|+.|.++|...+..|.+++++-+.. . ....+.+|... .. +.++. .....+..++.-
T Consensus 38 kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~--~--~~~a~~~gv~~--~~---~~~e~-------~~~~aDvVilav- 100 (304)
T PLN02256 38 KIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD--Y--SDIAAELGVSF--FR---DPDDF-------CEEHPDVVLLCT- 100 (304)
T ss_pred EEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc--H--HHHHHHcCCee--eC---CHHHH-------hhCCCCEEEEec-
Confidence 46677899999999999999998877766553 1 24455678743 22 12221 111224554421
Q ss_pred CChHHHHHHHHHHHHHH-HHhhCCCCCEEEEecCc--chHHHHHHHHHHhcCCCCeEEEEcCCCCccccCCCCCCCchhc
Q 019047 238 DNMANLKIHFDSTGPEI-WEDTLGCVDIFVAAIGT--GGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSIL 314 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei-~~ql~~~~D~vv~pvG~--Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~~~~~~p~~l 314 (347)
-+. ....+..|+ ...+ +++.+|+-+++ |..+..+...+ ..+.++|+.-|...+...+......+..+
T Consensus 101 -p~~----~~~~vl~~l~~~~l--~~~~iviDv~SvK~~~~~~~~~~l---~~~~~~V~~HPmaG~e~~~~~~~~~~~~~ 170 (304)
T PLN02256 101 -SIL----STEAVLRSLPLQRL--KRSTLFVDVLSVKEFPKNLLLQVL---PEEFDILCTHPMFGPESGKGGWAGLPFVY 170 (304)
T ss_pred -CHH----HHHHHHHhhhhhcc--CCCCEEEecCCchHHHHHHHHHhC---CCCCeEEecCCCCCCCCCccccCCCeEEE
Confidence 111 112222333 1112 46789999988 44444333222 23568999999765433221111111111
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHhcC
Q 019047 315 DVQLLDEVIKVTNDEAVNMARRLALEEG 342 (347)
Q Consensus 315 ~~~~vd~~v~Vsd~ea~~a~~~La~~eG 342 (347)
....+.. .-+++++.+..+.|.+.-|
T Consensus 171 ~~~~i~~--~~~~~~~~~~l~~l~~~lG 196 (304)
T PLN02256 171 DKVRIGD--EGEREARCERFLDIFEEEG 196 (304)
T ss_pred ecceecC--CCCCHHHHHHHHHHHHHCC
Confidence 1000000 2235566677777776555
No 344
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=54.31 E-value=59 Score=28.79 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=42.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+.+|+..+|.-|..+|......|.+++++...+... .....+...+.++..+..+.+..+.++.+.+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 70 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVA 70 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHH
Confidence 457888899999999999999999887765422111 1122344556677666544443445544443
No 345
>PRK07831 short chain dehydrogenase; Provisional
Probab=54.22 E-value=95 Score=28.14 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=40.1
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHh-cCC-EEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTG-NTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRA-FGA-EIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assG-N~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~-~GA-~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++| .-|.++|......|.+++++-..... ......++. +|. ++..+..+....+.++.+.+..
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 4667777666 69999999999999986654332111 112233333 563 5655554444345555554443
No 346
>PRK07102 short chain dehydrogenase; Provisional
Probab=54.12 E-value=94 Score=27.74 Aligned_cols=65 Identities=14% Similarity=0.013 Sum_probs=39.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHH-hcCCEEEEECCCCChHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLR-AFGAEIILTDPEKGLRGALDKA 221 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a 221 (347)
+.+|+.++|.-|.++|......|.+++++....... .....++ ..+.++..+..+.+..+.++..
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 69 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAF 69 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH
Confidence 568888899999999999999999877765532111 1122222 2356776665444333334333
No 347
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=54.00 E-value=90 Score=32.50 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=41.4
Q ss_pred EEEEeCC---ChhHHHHHHHHHHcC-CcEEEEeCCCC--CHHHHHHHHhcCCEEEEEC
Q 019047 158 VLVEPTT---GNTGLGIAFVAAVKG-YKLIVTMPAST--NLERRILLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~ass---GN~g~AlA~aa~~~G-l~~~I~vp~~~--~~~~~~~l~~~GA~V~~~~ 209 (347)
.|+..+. +|.+++++..++.+| +++++..|+.. +...+..++..|+.+..+.
T Consensus 176 kVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 176 HIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred EEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 4666667 688999999999998 99999999864 5555677777898888765
No 348
>PRK12746 short chain dehydrogenase; Provisional
Probab=53.96 E-value=89 Score=28.03 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=42.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|......|.++++....+... .....+...|.++..+..+.+..+.+..+.+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~ 76 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVE 76 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHH
Confidence 4678888899999999999888998877754443211 1122344446677665544433444444433
No 349
>PRK07576 short chain dehydrogenase; Provisional
Probab=53.93 E-value=81 Score=28.81 Aligned_cols=69 Identities=23% Similarity=0.147 Sum_probs=42.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+..+|.-|.++|......|.+++++...... ......+...+.+++.+..+.+..+.+..+.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~ 79 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQ 79 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHH
Confidence 477888888999999999988899987666443111 111234455666766555443333444444433
No 350
>PRK07326 short chain dehydrogenase; Provisional
Probab=53.86 E-value=79 Score=27.97 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=26.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
++.+++.++|.-|.++|......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 46788888999999999998888998776643
No 351
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=53.38 E-value=1.6e+02 Score=26.19 Aligned_cols=52 Identities=25% Similarity=0.447 Sum_probs=37.7
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcC
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFG 202 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~G 202 (347)
+.+.+.+|.+.++...+|..|.+++..++.+|+++++... +..+...++..|
T Consensus 102 ~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~ 153 (293)
T cd05195 102 DLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVG---SEEKREFLRELG 153 (293)
T ss_pred HHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhC
Confidence 3355677778777777899999999999999997554433 345666666666
No 352
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=53.35 E-value=74 Score=30.00 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=42.4
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhcCCEEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILT 208 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~-~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.++++.+|...+|..|.+++..|+.+|.++++...... ...++..++.+|++-+..
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 34566777777767799999999999999998776655321 125667777889875543
No 353
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=53.31 E-value=54 Score=32.06 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=38.2
Q ss_pred EEEeCC-ChhHHHHHHHHHHcCCcEEEEeCCC--CCHHHHHHHH----hcCCEEEEEC
Q 019047 159 LVEPTT-GNTGLGIAFVAAVKGYKLIVTMPAS--TNLERRILLR----AFGAEIILTD 209 (347)
Q Consensus 159 vv~ass-GN~g~AlA~aa~~~Gl~~~I~vp~~--~~~~~~~~l~----~~GA~V~~~~ 209 (347)
|+..+. .|..++++..++.+|++++++-|+. .+...+..++ ..|+++..+.
T Consensus 157 v~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 157 VVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 455555 6899999999999999999999985 4444444443 4688888765
No 354
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=53.21 E-value=83 Score=30.36 Aligned_cols=55 Identities=22% Similarity=0.143 Sum_probs=37.8
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHH-HHHHhcCCEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR-ILLRAFGAEIIL 207 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~-~~l~~~GA~V~~ 207 (347)
.+...+|++.+|. ++|.-|.+++.+|+.+|.+++++.. ...++ ..++.+|++.+.
T Consensus 175 ~~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~---~~~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 175 FGLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISS---SDKKREEALEHLGADDYL 230 (357)
T ss_pred cccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHhcCCcEEe
Confidence 3444566676666 6799999999999999998655443 23333 445679997544
No 355
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=53.17 E-value=97 Score=28.10 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=40.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HhcCCEEEEECCCCChHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
+++.+|+.++|.-|.++|......|.+++++-.. ..+.+.+ +.++.++..+..+....+.++.+.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAV 71 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHH
Confidence 3577888888999999999999999987665432 2333333 334555555544333234444443
No 356
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=53.10 E-value=33 Score=33.43 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=37.7
Q ss_pred EEEEeCCC--hhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHH----HHHhcCCEEEEEC
Q 019047 158 VLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPASTN--LERRI----LLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~assG--N~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~----~l~~~GA~V~~~~ 209 (347)
.|+..+.+ |.+++++.+++.+|+++.++.|+... ...+. ..+..|+++..++
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 158 SYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred EEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 35666665 68999999999999999999998642 22222 2345799988765
No 357
>PRK08017 oxidoreductase; Provisional
Probab=53.09 E-value=1.3e+02 Score=26.95 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=37.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+.+|+..+|.-|.++|......|.+++++.. +..+.+.++..|++.+.++
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r---~~~~~~~~~~~~~~~~~~D 53 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACR---KPDDVARMNSLGFTGILLD 53 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC---CHHHhHHHHhCCCeEEEee
Confidence 5678888899999999998888998766543 2345556666788777765
No 358
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=53.05 E-value=92 Score=27.59 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=42.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHH--HHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE--RRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~--~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
+.+|+.++|.-|.++|..-...|.++++......... ........+.++..+..+....+.+..+.+..
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5678888899999999998888988877765432111 11222234566766655444445555555443
No 359
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.01 E-value=1.1e+02 Score=30.65 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=45.1
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
+++.+|+..+|.-|.++|......|.+++++-...............|++++.++-. ..+.++.+.+..
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~--~~~~~~~~~~~~ 278 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT--APDAPARIAEHL 278 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC--CHHHHHHHHHHH
Confidence 456788888899999999999999998777644322333334445567777776632 244555554443
No 360
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=52.39 E-value=1.6e+02 Score=27.82 Aligned_cols=54 Identities=30% Similarity=0.292 Sum_probs=37.8
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK-LIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~-~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
...+.++.++++. ++|..|.++...|+.+|++ +++... +..+...++.+|++-+
T Consensus 154 ~~~~~~~~~vlI~-g~g~~g~~~~~lA~~~G~~~v~~~~~---~~~~~~~l~~~g~~~~ 208 (343)
T cd08236 154 LAGITLGDTVVVI-GAGTIGLLAIQWLKILGAKRVIAVDI---DDEKLAVARELGADDT 208 (343)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCCCEE
Confidence 3445667777776 5788999999999999998 444322 3456667777887433
No 361
>PRK05872 short chain dehydrogenase; Provisional
Probab=52.19 E-value=74 Score=29.76 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH-HHhc--CCEEEEECCCCChHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAF--GAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~-l~~~--GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+++.+|+.++|.-|.++|......|.+++++-.. ..+.+. .+.+ +.+++.+..+.+..+.++.+.+
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLE---EAELAALAAELGGDDRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHH
Confidence 3577888888999999999999999986665432 223222 2333 4566653333333444544433
No 362
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=52.18 E-value=54 Score=33.09 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=40.2
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC---C--CHHHHHHHHhcCCEEEEE
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---T--NLERRILLRAFGAEIILT 208 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~---~--~~~~~~~l~~~GA~V~~~ 208 (347)
.|+..++||.|.-+|..+..+|.+++++.... + ....++.++..|.+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 48999999999999999999999988887652 2 234456678889888753
No 363
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=51.97 E-value=1.1e+02 Score=27.59 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=40.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|......|.+++++.... .......+..+.++..+..+....+.+..+.+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKP--ARARLAALEIGPAAIAVSLDVTRQDSIDRIVA 72 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence 4678888899999999999989999877764432 11122233345556555443333344444443
No 364
>PRK07023 short chain dehydrogenase; Provisional
Probab=51.87 E-value=74 Score=28.45 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=40.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDK 220 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~ 220 (347)
+.+|+.++|.-|.++|......|.+++++..... . ......|.++..+..+....+.++.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~-~---~~~~~~~~~~~~~~~D~~~~~~~~~ 62 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRH-P---SLAAAAGERLAEVELDLSDAAAAAA 62 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcc-h---hhhhccCCeEEEEEeccCCHHHHHH
Confidence 4688889999999999998889999877654322 1 1234567777666544433444444
No 365
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=51.74 E-value=1.8e+02 Score=26.37 Aligned_cols=55 Identities=27% Similarity=0.420 Sum_probs=39.5
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
..+.++.+.++...+|..|.+++..++..|.+++++.. +..+.+.++.+|++.+.
T Consensus 135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 189 (323)
T cd05276 135 GGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGADVAI 189 (323)
T ss_pred cCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCCEEE
Confidence 34556677777777789999999999999998655433 34566667778875443
No 366
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=51.71 E-value=29 Score=30.53 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEE
Q 019047 247 FDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGV 294 (347)
Q Consensus 247 ~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigV 294 (347)
....+.++.++ +-.||+||.=.|=|-+ .++|+.+|++++|+-
T Consensus 53 v~~a~~~L~~~-Gf~PDvI~~H~GWGe~-----Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 53 VARAARQLRAQ-GFVPDVIIAHPGWGET-----LFLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHHHHc-CCCCCEEEEcCCcchh-----hhHHHhCCCCcEEEE
Confidence 44566666666 5689999998888774 689999999999976
No 367
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=51.54 E-value=1e+02 Score=27.40 Aligned_cols=65 Identities=22% Similarity=0.164 Sum_probs=42.5
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+|+..+|.-|.++|......|.+++++...+.+ ....+.++..|.++..+..+.+-.+.++.+.+
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 68 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLE 68 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHH
Confidence 677888999999999999999997766543221 22234556668888766654443445544443
No 368
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=51.32 E-value=62 Score=36.16 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=56.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE-ECCCCC-hHHHHHHHHHHHHcCCCceec
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL-TDPEKG-LRGALDKAEEIVLNTPNAYMF 234 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~-~~~~~~-~~~a~~~a~~~a~~~~~~~~~ 234 (347)
+.|+.-++|..|.+.|+..++.|++++||=... ..|.-+.. ++ ++. .++.+++-.+..++. |..+.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~----------~~GG~l~yGIP-~~rlp~~vi~~~i~~l~~~-Gv~f~ 374 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH----------DLGGVLRYGIP-EFRLPNQLIDDVVEKIKLL-GGRFV 374 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC----------CCCceEEccCC-CCcChHHHHHHHHHHHHhh-cCeEE
Confidence 458999999999999999999999999984332 24544432 22 111 134455444555554 33332
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcc
Q 019047 235 QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272 (347)
Q Consensus 235 ~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~G 272 (347)
... ..|......++.+ ...|+||+++|.+
T Consensus 375 ~n~------~vG~dit~~~l~~---~~yDAV~LAtGA~ 403 (944)
T PRK12779 375 KNF------VVGKTATLEDLKA---AGFWKIFVGTGAG 403 (944)
T ss_pred EeE------EeccEEeHHHhcc---ccCCEEEEeCCCC
Confidence 111 1233222222222 2589999999984
No 369
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=50.92 E-value=1.6e+02 Score=25.25 Aligned_cols=88 Identities=13% Similarity=0.053 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCC--ChhHHHHHHHHHHcCCcEEEEe-----------CCC-CCHHHHHHHHhcC
Q 019047 137 RIGYSMITDAEESGDITPGKTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTM-----------PAS-TNLERRILLRAFG 202 (347)
Q Consensus 137 Rga~~~~~~a~~~G~~~~g~~~vv~ass--GN~g~AlA~aa~~~Gl~~~I~v-----------p~~-~~~~~~~~l~~~G 202 (347)
.++..++-..+-.| ...++..++ ||.-.+|+-+....++++++++ +.- +.......++..+
T Consensus 45 ~aa~~aAg~~~~~~-----~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~ 119 (157)
T TIGR03845 45 EGVGICAGAYLAGK-----KPAILMQSSGLGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLG 119 (157)
T ss_pred HHHHHHHHHHHhcC-----CcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcC
Confidence 34445544443333 234566665 4666666666657899999998 331 2222333335555
Q ss_pred CEEEEECCCCChHHHHHHHHHHHHcCCC
Q 019047 203 AEIILTDPEKGLRGALDKAEEIVLNTPN 230 (347)
Q Consensus 203 A~V~~~~~~~~~~~a~~~a~~~a~~~~~ 230 (347)
-....+....+. ..+++|.+.+.+.++
T Consensus 120 i~~~~i~~~e~~-~~i~~A~~~a~~~~g 146 (157)
T TIGR03845 120 IPYTIPREPEEA-KLIEKAISDAYENSR 146 (157)
T ss_pred CCeEEeCCHHHH-HHHHHHHHHHHhCCC
Confidence 444444432245 677777777765433
No 370
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.88 E-value=99 Score=28.17 Aligned_cols=32 Identities=28% Similarity=0.156 Sum_probs=23.1
Q ss_pred CeEEEEeCC--ChhHHHHHHHHHHcCCcEEEEeC
Q 019047 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
++.+|+.++ +--|.++|......|.++++...
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYL 44 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 355555544 36899999998889998777644
No 371
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=50.76 E-value=1.1e+02 Score=27.42 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=39.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHH-HHHHH-hcC-CEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER-RILLR-AFG-AEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~-~~~l~-~~G-A~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+.++|.-|.++|......|.+++++-........ ...+. .+| .+++.+..+.+..+.+..+.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 72 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALS 72 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHH
Confidence 467888899999999999988899987766543211111 12222 234 45665554443334444443
No 372
>PRK10490 sensor protein KdpD; Provisional
Probab=50.75 E-value=1e+02 Score=34.23 Aligned_cols=108 Identities=11% Similarity=0.017 Sum_probs=61.5
Q ss_pred CeEEEEeCCChhHHHH----HHHHHHcCCcEEEEeCCC-----CCH-------HHHHHHHhcCCEEEEECCCCChHHHHH
Q 019047 156 KTVLVEPTTGNTGLGI----AFVAAVKGYKLIVTMPAS-----TNL-------ERRILLRAFGAEIILTDPEKGLRGALD 219 (347)
Q Consensus 156 ~~~vv~assGN~g~Al----A~aa~~~Gl~~~I~vp~~-----~~~-------~~~~~l~~~GA~V~~~~~~~~~~~a~~ 219 (347)
.+++||-+.+-++..+ +.+|..++-+.+++..+. .+. ..+++.+.+||+++.+.++ +..+
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~----dva~ 326 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP----AEEK 326 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC----CHHH
Confidence 4678888887776444 556777787776543332 111 1244667899999888753 2233
Q ss_pred HHHHHHHcCC-CceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 019047 220 KAEEIVLNTP-NAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIG 270 (347)
Q Consensus 220 ~a~~~a~~~~-~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG 270 (347)
.-.++|++++ ..+.+...... .| ....++...+.+.. +.+|+.|++..
T Consensus 327 ~i~~~A~~~~vt~IViG~s~~~-~~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 327 AVLRYAREHNLGKIIIGRRASR-RW-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHHhCCCEEEECCCCCC-CC-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 4456666653 22334333222 12 12335666777665 67888888643
No 373
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=50.72 E-value=42 Score=32.77 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=38.4
Q ss_pred EEEEeCCC--hhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHH----HHHhcCCEEEEEC
Q 019047 158 VLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPASTN--LERRI----LLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~assG--N~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~----~l~~~GA~V~~~~ 209 (347)
.|+..+.+ |.++++..+++.+|++++++-|+... ...+. ..+..|+++..++
T Consensus 158 ~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 158 TLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 35666664 89999999999999999999998632 22232 3355788888765
No 374
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=50.44 E-value=1.1e+02 Score=28.59 Aligned_cols=51 Identities=12% Similarity=-0.055 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEe
Q 019047 136 DRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (347)
Q Consensus 136 ~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~v 186 (347)
-+|..+.+..+.+.-......+.++.-+-||-|..+|.....+|.+++-+.
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVs 68 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLS 68 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 457777777665533333323568999999999999999999887777443
No 375
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=50.31 E-value=1e+02 Score=28.06 Aligned_cols=70 Identities=16% Similarity=0.058 Sum_probs=39.4
Q ss_pred CeEEEEeCC--ChhHHHHHHHHHHcCCcEEEEeC-CC--CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMP-AS--TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp-~~--~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++ +--|.++|......|.++++..- .. ......+.++..+.+++.+..+.+..+.++.+.+..
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 455566543 57889999888889999876532 21 123345555555555544443333344555444433
No 376
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=50.24 E-value=2.4e+02 Score=27.13 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC--------C---CHHH---H--H-HHHhc--
Q 019047 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS--------T---NLER---R--I-LLRAF-- 201 (347)
Q Consensus 141 ~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~--------~---~~~~---~--~-~l~~~-- 201 (347)
..+..++.++. +-+++.+...+.-...-..+...|++++.+-... . .... . + ..+.+
T Consensus 71 ~~i~~li~~~v----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~~ 146 (336)
T PRK15408 71 QLINNFVNQGY----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGK 146 (336)
T ss_pred HHHHHHHHcCC----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcCC
Confidence 55667777776 4445544444433455555778899988774321 0 1111 1 1 12223
Q ss_pred -CCEEEEECCCCC---hHHHHHHHHH-HHHcCCCceecC-CCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHH
Q 019047 202 -GAEIILTDPEKG---LRGALDKAEE-IVLNTPNAYMFQ-QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI 275 (347)
Q Consensus 202 -GA~V~~~~~~~~---~~~a~~~a~~-~a~~~~~~~~~~-~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~ 275 (347)
+.+|..+.+..+ .....+-..+ +.+++++...+. ++.+... ..++. .+.++.+. .+++|.||++ +...+
T Consensus 147 g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~-~~a~~-~~~~lL~~-~pdi~aI~~~--~~~~~ 221 (336)
T PRK15408 147 DKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDA-TKSLQ-TAEGILKA-YPDLDAIIAP--DANAL 221 (336)
T ss_pred CCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCcH-HHHHH-HHHHHHHH-CCCCcEEEEC--CCccH
Confidence 367765543221 1112222222 223455655543 2222221 22333 44455554 3678899887 44445
Q ss_pred HHHHHHHHhcCC-CCeEEEEc
Q 019047 276 TGTGRFLKMMNK-EIKVVGVE 295 (347)
Q Consensus 276 ~Gi~~~~k~~~~-~~~vigVe 295 (347)
.|+..++++.+. ++.|+|.+
T Consensus 222 ~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 222 PAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred HHHHHHHHhCCCCCEEEEEeC
Confidence 577888887643 68888886
No 377
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=50.08 E-value=1.4e+02 Score=30.77 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCC--
Q 019047 134 VKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE-- 211 (347)
Q Consensus 134 fK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~-- 211 (347)
.++-.+...+..|.+.+. +.+|+.+.+|.+++.++.+ +-..+.+++.+. +...+++.-.+|..-+.++..
T Consensus 359 ~~~aia~sAv~~A~~l~a----kaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~--~~~~r~l~l~~GV~p~~~~~~~~ 430 (480)
T cd00288 359 TTEAVAMSAVRAAFELGA----KAIVVLTTSGRTARLVSKY--RPNAPIIAVTRN--EQTARQLHLYRGVYPVLFEEPKP 430 (480)
T ss_pred hHHHHHHHHHHHHHhcCC----CEEEEECCCcHHHHHHHhh--CCCCCEEEEcCC--HHHhhheeeccCcEEEEeccccc
Confidence 455566666666666654 4556666678888776665 334666666554 222333334567777666532
Q ss_pred ---CChHHHHHHHHHHHHc
Q 019047 212 ---KGLRGALDKAEEIVLN 227 (347)
Q Consensus 212 ---~~~~~a~~~a~~~a~~ 227 (347)
.+.++.+..+.+.+.+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~ 449 (480)
T cd00288 431 GWQEDTDARLKAAVNVAKE 449 (480)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 2233444444444443
No 378
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=49.95 E-value=55 Score=31.56 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=29.5
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN 191 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~ 191 (347)
|.++.+..-.+|.+++++.+++.+|+.+++.-|++..
T Consensus 153 g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 153 QKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 3454444444799999999999999999999998854
No 379
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=49.84 E-value=97 Score=31.63 Aligned_cols=49 Identities=10% Similarity=-0.052 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEE
Q 019047 135 KDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLI 183 (347)
Q Consensus 135 K~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~ 183 (347)
=-+|..+.+..+.+..-.....++|+.-+.||-|..+|.....+|-+++
T Consensus 216 TG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVV 264 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVL 264 (454)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 3457777776665432222223458999999999999999888888877
No 380
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=49.76 E-value=42 Score=32.78 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=38.4
Q ss_pred EEEEeCCC--hhHHHHHHHHHHcCCcEEEEeCCCC--CHHHH----HHHHhcCCEEEEEC
Q 019047 158 VLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPAST--NLERR----ILLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~assG--N~g~AlA~aa~~~Gl~~~I~vp~~~--~~~~~----~~l~~~GA~V~~~~ 209 (347)
.|+..+.+ |.++++..+++.+|++++++.|+.. +...+ ...+..|+++..++
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 158 TLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 35556665 7899999999999999999999863 22222 23455799988776
No 381
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=49.58 E-value=46 Score=32.66 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=36.9
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+|++.++ .++|.-|.+++..|+.+|.+++++... +..+...++.+|++.+.
T Consensus 177 ~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKRLGV-NGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCEEEE-EcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 45666555 467999999999999999985544332 33446677889997554
No 382
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=49.55 E-value=1.2e+02 Score=27.64 Aligned_cols=51 Identities=31% Similarity=0.513 Sum_probs=38.0
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~ 204 (347)
+.+.++++.+|...+|..|.+++..++..|+++++.... . +...++.+|++
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~---~-~~~~~~~~g~~ 190 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASA---A-NADFLRSLGAD 190 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecc---h-hHHHHHHcCCC
Confidence 445667777776667999999999999999997666542 2 56666778863
No 383
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.01 E-value=2.1e+02 Score=25.94 Aligned_cols=131 Identities=11% Similarity=-0.003 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHH
Q 019047 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGAL 218 (347)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~ 218 (347)
+...+..+.+.|. +..=++.++-|+-.++....+.++ ++.|=...-......+.....||+.++++.. +.
T Consensus 22 a~~~~~al~~~Gi----~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~---~~-- 91 (204)
T TIGR01182 22 ALPLAKALIEGGL----RVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPGL---TP-- 91 (204)
T ss_pred HHHHHHHHHHcCC----CEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCCC---CH--
Confidence 4445555566665 333355556677777888877776 5555444556777888888899999988742 22
Q ss_pred HHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCE-EEEecCcchHHHHHHHHHHhcCCCCeEEE
Q 019047 219 DKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI-FVAAIGTGGTITGTGRFLKMMNKEIKVVG 293 (347)
Q Consensus 219 ~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~-vv~pvG~Gg~~~Gi~~~~k~~~~~~~vig 293 (347)
+..+.++++ +..++.+--.+. ||.+.+.-..|. =+-|++..|.. ...+.++.-.|+++++.
T Consensus 92 -~v~~~~~~~-~i~~iPG~~Tpt-----------Ei~~A~~~Ga~~vKlFPA~~~GG~-~yikal~~plp~i~~~p 153 (204)
T TIGR01182 92 -ELAKHAQDH-GIPIIPGVATPS-----------EIMLALELGITALKLFPAEVSGGV-KMLKALAGPFPQVRFCP 153 (204)
T ss_pred -HHHHHHHHc-CCcEECCCCCHH-----------HHHHHHHCCCCEEEECCchhcCCH-HHHHHHhccCCCCcEEe
Confidence 333445555 566665544443 444443333443 35565532211 11345555567788773
No 384
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=49.00 E-value=81 Score=28.61 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=39.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+.+|+.++|.-|.++|......|.++++.-..... ....+.++..| ++..+..+.+..+.++.+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~ 68 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVK 68 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHH
Confidence 45788888999999999999999987665433211 11223344444 45544433333444544443
No 385
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=48.94 E-value=1.1e+02 Score=28.93 Aligned_cols=67 Identities=27% Similarity=0.352 Sum_probs=45.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHH--HHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER--RILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~--~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.||+..|+.-|.++|...+..|.+++++......... .+.-+.+|.+|...+-|.+..+++.+..
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHH
Confidence 467888888999999999999999999998775432222 2222446777776665554445554443
No 386
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=48.79 E-value=1e+02 Score=27.10 Aligned_cols=65 Identities=26% Similarity=0.261 Sum_probs=42.4
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+|+.++|-.|..+|......|.+++++.....+ ......++..|+++..+..+.+..+.++++..
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 68 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVE 68 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 677888999999999988889987666543211 12344566778887766544433455555443
No 387
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=48.75 E-value=68 Score=33.27 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=40.3
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
.++.-+.|..|.+.+..++.+|-.++++- ....++++.+.+|++.+.++
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d---~~~~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFD---TRPEVKEQVQSMGAEFLELD 214 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHcCCeEEecc
Confidence 47788899999999999999998755543 35668889999999997776
No 388
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=48.55 E-value=3.2e+02 Score=28.02 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHcCCcEEEEe-----------CCCCCHHHHHHHHhcCCEEEEECCCCC----hHHHHHHHHHHHHcCCCceecC
Q 019047 171 IAFVAAVKGYKLIVTM-----------PASTNLERRILLRAFGAEIILTDPEKG----LRGALDKAEEIVLNTPNAYMFQ 235 (347)
Q Consensus 171 lA~aa~~~Gl~~~I~v-----------p~~~~~~~~~~l~~~GA~V~~~~~~~~----~~~a~~~a~~~a~~~~~~~~~~ 235 (347)
+..+|+..|+++++.. |..............|++.+....+.. --++++...+.+++....+...
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Q ss_pred ---------CCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCC
Q 019047 236 ---------QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA 297 (347)
Q Consensus 236 ---------~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~ 297 (347)
........ ......+.++.+.+ +.+.||+..-+|.++-.++++ .|.+.|+++.|.
T Consensus 342 ~~~~~~~~~~~~~~~~~-~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr~----rp~~PIiAvT~~ 405 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTIT-EAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSKY----RPNAPIIAVTPN 405 (473)
T ss_pred hhhhhhhcccccCCChH-HHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHhh----CCCCCEEEEcCC
No 389
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.35 E-value=97 Score=28.34 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=36.1
Q ss_pred CeEEEEeC--CChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh-cCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPT--TGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~as--sGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~-~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.. ++--|.++|......|.++++.........+.+.+.. .|. .+.+..|....+.++.+.+
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~ 76 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDS-ELVFRCDVASDDEINQVFA 76 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCC-ceEEECCCCCHHHHHHHHH
Confidence 45555553 4578899999988899998875332222333444433 343 2233333333444544443
No 390
>PRK05693 short chain dehydrogenase; Provisional
Probab=48.28 E-value=1.7e+02 Score=26.66 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=37.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+.+|+..+|--|.++|......|.+++++... ..+...+...|.+.+.++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~D 52 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLD 52 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEee
Confidence 56788888999999999998999987776543 344555556677766665
No 391
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=48.20 E-value=2.3e+02 Score=26.49 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=41.0
Q ss_pred EEEEeCCCCC-CCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-----HHH
Q 019047 121 VAAKLESMEP-CRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-----LER 194 (347)
Q Consensus 121 Iy~K~E~~~p-tGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-----~~~ 194 (347)
|.+..|...- +..|=.|+ ..++....++|. ....++....+... ..-+..|+++..+ ++... ...
T Consensus 2 i~ir~Da~~~iG~GHv~Rc-l~LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRC-LTLARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHH-HHHHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 5566665543 34444443 333444455554 33334433333322 2335677775553 44321 134
Q ss_pred HHHHHhcCCEEEEECC
Q 019047 195 RILLRAFGAEIILTDP 210 (347)
Q Consensus 195 ~~~l~~~GA~V~~~~~ 210 (347)
...++.++.++++++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 5666777888888874
No 392
>PRK06483 dihydromonapterin reductase; Provisional
Probab=48.09 E-value=1.6e+02 Score=26.07 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=37.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++.+|+.++|--|.++|......|.+++++-... . ...+.++..|+..+..+
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~-~-~~~~~~~~~~~~~~~~D 54 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTH-Y-PAIDGLRQAGAQCIQAD 54 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc-h-hHHHHHHHcCCEEEEcC
Confidence 4678888889999999999888999887764432 2 23455566787766665
No 393
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.08 E-value=1.9e+02 Score=26.03 Aligned_cols=64 Identities=28% Similarity=0.254 Sum_probs=41.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|......|.++++..... ....+.++..+...+.++- +..+.++.+.+
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl--~~~~~~~~~~~ 71 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDV--GNRDQVKKSKE 71 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecC--CCHHHHHHHHH
Confidence 5678888889999999999888999877654432 3344455555666665553 22344444443
No 394
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=47.88 E-value=1e+02 Score=27.38 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCChhHHH---HHHHHHHcCCcEEEEeCCCCCHHH
Q 019047 154 PGKTVLVEPTTGNTGLG---IAFVAAVKGYKLIVTMPASTNLER 194 (347)
Q Consensus 154 ~g~~~vv~assGN~g~A---lA~aa~~~Gl~~~I~vp~~~~~~~ 194 (347)
|++++|...++|..... |+. +.+.+++++++|-.+-.-..
T Consensus 74 p~~~vv~i~GDG~f~m~~~eL~T-a~~~~lpviivV~NN~~yg~ 116 (202)
T cd02006 74 PDRQVVALSGDYDFQFMIEELAV-GAQHRIPYIHVLVNNAYLGL 116 (202)
T ss_pred CCCeEEEEEeChHhhccHHHHHH-HHHhCCCeEEEEEeCchHHH
Confidence 34567888888866554 454 77889999988887654433
No 395
>PRK06940 short chain dehydrogenase; Provisional
Probab=47.85 E-value=1.1e+02 Score=28.30 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=38.1
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (347)
..||+ ++|--|.++|.... .|.++++....... ....+.++..|.+++.+..+....+.++.+.+..+
T Consensus 4 ~~lIt-Ga~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 4 VVVVI-GAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred EEEEE-CCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 44444 45778888888875 68877766432211 11233455568787666544433455555544433
No 396
>PRK06841 short chain dehydrogenase; Provisional
Probab=47.76 E-value=1.1e+02 Score=27.36 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=26.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
++.+|+..+|--|.++|......|.+++++..
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 46788888899999999999899998766544
No 397
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=47.75 E-value=87 Score=30.59 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=34.1
Q ss_pred ChhHHHHHHHHHHcCCcEEEEeC-CC--CCHHHHHH----HHhcCCEEEEEC
Q 019047 165 GNTGLGIAFVAAVKGYKLIVTMP-AS--TNLERRIL----LRAFGAEIILTD 209 (347)
Q Consensus 165 GN~g~AlA~aa~~~Gl~~~I~vp-~~--~~~~~~~~----l~~~GA~V~~~~ 209 (347)
+|...+++..+.++|+++++..| +. .++.-+.. ++..|.++..+.
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 38899999999999999999999 64 33333332 456798888765
No 398
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=47.55 E-value=1.8e+02 Score=27.48 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=38.6
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKG-YKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~G-l~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
...+.++.+.+|. ++|..|.+++..|+.+| .++++ +. ....+...++.+|++-+
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~~~ 215 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGATHT 215 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCCce
Confidence 3345566777775 56999999999999999 55443 33 35677778888998543
No 399
>PRK13243 glyoxylate reductase; Reviewed
Probab=47.41 E-value=1e+02 Score=29.91 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=62.1
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
++|..-+.|+-|.++|..++.+|.++++|-+.. ... ....+|++. . ++++ +.++- +...++-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~---~---~l~e-------ll~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY---R---PLEE-------LLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe---c---CHHH-------HHhhC-CEEEEeC
Confidence 457888999999999999999999987765532 221 233445431 1 1222 22222 4544432
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHH--HHHHHHH
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT--GTGRFLK 283 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~--Gi~~~~k 283 (347)
-.++. -...+..|.++++ +++.+++-+|.|+.+- .+..+++
T Consensus 213 P~t~~----T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 213 PLTKE----TYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CCChH----HhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHH
Confidence 22221 2233556777776 6789999999999864 3334444
No 400
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.17 E-value=61 Score=29.52 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHhcCC-EEEEECCCCChH
Q 019047 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN---LERRILLRAFGA-EIILTDPEKGLR 215 (347)
Q Consensus 140 ~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~---~~~~~~l~~~GA-~V~~~~~~~~~~ 215 (347)
-.++.+..+.-.++++++ |.+-++| .|...|.+|+..| .|+--+..+ ..-++.++.+|- +|++.-++..
T Consensus 58 P~~vA~m~~~L~~~~g~~-VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~-- 130 (209)
T COG2518 58 PHMVARMLQLLELKPGDR-VLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS-- 130 (209)
T ss_pred cHHHHHHHHHhCCCCCCe-EEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc--
Confidence 344445555445666666 7888887 5677888888888 444443222 223455777887 5665544321
Q ss_pred HHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCc
Q 019047 216 GALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGT 271 (347)
Q Consensus 216 ~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~ 271 (347)
.|+--..+|+-.... .+..++=.-+.+||. .--.+|+|+|.
T Consensus 131 -------------~G~~~~aPyD~I~Vt-aaa~~vP~~Ll~QL~-~gGrlv~PvG~ 171 (209)
T COG2518 131 -------------KGWPEEAPYDRIIVT-AAAPEVPEALLDQLK-PGGRLVIPVGS 171 (209)
T ss_pred -------------cCCCCCCCcCEEEEe-eccCCCCHHHHHhcc-cCCEEEEEEcc
Confidence 012112233322221 122223334578883 22468899983
No 401
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=47.08 E-value=1.9e+02 Score=27.94 Aligned_cols=118 Identities=13% Similarity=0.211 Sum_probs=65.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcC--CcEEEEeCCCCCHH----HHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKG--YKLIVTMPASTNLE----RRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTP 229 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~G--l~~~I~vp~~~~~~----~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~ 229 (347)
+..|...++|-|-..+|.+=+... ++++.+-|.+.... .-..++-.|+..+...-+. +.+ +
T Consensus 171 d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~---~~i----------D 237 (300)
T COG0031 171 DAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDL---DLI----------D 237 (300)
T ss_pred CEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCccccc---ccC----------c
Confidence 456777788999999999977764 67777777642211 1223444555444311000 000 1
Q ss_pred CceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCC
Q 019047 230 NAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAER 299 (347)
Q Consensus 230 ~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~ 299 (347)
..+.+.. ...+ .++.++.+. +-+++...+|.++.+..+..++..++-+|+.|-|+..
T Consensus 238 ~v~~V~d---~~A~-----~~~r~La~~-----eGilvG~SsGA~~~aa~~~a~~~~~g~~IVti~pD~G 294 (300)
T COG0031 238 EVIRVSD---EEAI-----ATARRLARE-----EGLLVGISSGAALAAALKLAKELPAGKTIVTILPDSG 294 (300)
T ss_pred eEEEECH---HHHH-----HHHHHHHHH-----hCeeecccHHHHHHHHHHHHHhcCCCCeEEEEECCCc
Confidence 1222211 1111 233344433 4477777788888887777777666777888887753
No 402
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.98 E-value=1.4e+02 Score=27.72 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=39.3
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
+.+.++++.++...+|..|.++...|+.+|.++++... ..+...++.+|+.++
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~----~~~~~~~~~~g~~~~ 187 (331)
T cd08273 135 AKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS----ERNHAALRELGATPI 187 (331)
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC----HHHHHHHHHcCCeEE
Confidence 45666777777766799999999999999997544432 556777788997653
No 403
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=46.72 E-value=2.8e+02 Score=26.92 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=86.0
Q ss_pred EEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCC-EEEEECCCCChHH--HHHHHHHHHHcCCCcee-cC
Q 019047 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGA-EIILTDPEKGLRG--ALDKAEEIVLNTPNAYM-FQ 235 (347)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA-~V~~~~~~~~~~~--a~~~a~~~a~~~~~~~~-~~ 235 (347)
++.||+|.-.-+-++ ++-+-+||.|+.--. ....+.-|. +|+..+|.=-.-+ ..+...++-+++|+... ++
T Consensus 142 i~cTSsNAvkvVe~~---~~~~~Iif~PD~~Lg--~yva~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlvH 216 (324)
T COG0379 142 ICCTSSNAVKVVESA---LDGDKILFLPDKNLG--RYVAKQTGAKKIILWPGHCIVHEEFTAEDIEELKEKYPDAEVLVH 216 (324)
T ss_pred eEEecchHHHHHHhc---cCCCcEEEcCcHHHH--HHHHHHcCCCcEEEECCccchhhhcCHHHHHHHHHHCCCCEEEEC
Confidence 345555554444443 566667777763222 222334555 7776664211111 11233344455666544 45
Q ss_pred CCCChHHHHH----HHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCC--CCccccCCCCCC
Q 019047 236 QFDNMANLKI----HFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA--ERSVISGENAGY 309 (347)
Q Consensus 236 ~~~n~~~~~~----g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~--~~~~~~g~~~~~ 309 (347)
+--.+.+... |-+....+..++ ...+-+++.. =.|+..-++...|+.++|...+. .|+.+...+...
T Consensus 217 PEC~~~Vv~~AD~vGST~~ii~~~~~--~~~~~~iv~T-----E~g~~~~l~~~~P~k~~~~~~~~~~~C~~Mk~itL~~ 289 (324)
T COG0379 217 PECPPEVVELADFVGSTSQIIKAVKA--SPAQKFIVGT-----ERGIVHRLQKEAPDKEFIPLPTAGAVCPTMKMITLEK 289 (324)
T ss_pred CCCCHHHHHhccccccHHHHHHHHhc--CCCceEEEEe-----cHHHHHHHHHHCCCCeEEccCCCCCcChhhhhhCHHH
Confidence 5322222211 312222233332 3445666643 45677788888999999999988 477766544444
Q ss_pred CchhccccccCeEEEeCHHHHHHHHHHHH
Q 019047 310 VPSILDVQLLDEVIKVTNDEAVNMARRLA 338 (347)
Q Consensus 310 ~p~~l~~~~vd~~v~Vsd~ea~~a~~~La 338 (347)
+-|.|... ....|.|+++-+.+|.+-|-
T Consensus 290 i~~~L~~~-~~~eV~V~~~i~~~A~~ale 317 (324)
T COG0379 290 ILEALEEG-GNNEVTVDEEIAERARRALE 317 (324)
T ss_pred HHHHHHhC-CCceEEeCHHHHHHHHHHHH
Confidence 44444322 22578899877666655543
No 404
>CHL00194 ycf39 Ycf39; Provisional
Probab=46.72 E-value=1.1e+02 Score=29.03 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=27.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
+++|+.++|.-|..++......|.++++++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 46788889999999999988899998887654
No 405
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.67 E-value=1.2e+02 Score=27.71 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=36.1
Q ss_pred CeEEEEeC--CChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH-HHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPT--TGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~as--sGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~-l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.+ ++--|.++|..-...|.++++.-.. ......+. .+.++.+++.+..+....+.++.+.+.
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~ 78 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFG-RALRLTERIAKRLPEPAPVLELDVTNEEHLASLADR 78 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCc-cchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHH
Confidence 45555555 5678888888888889987665322 22222222 233454544444333334445444443
No 406
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.47 E-value=1.3e+02 Score=27.67 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=36.9
Q ss_pred CeEEEEeCCC--hhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assG--N~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+..++ .-|.++|......|.++++.-.........+.+...+.++..+..+....+.++.+.+..
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 78 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAEL 78 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHH
Confidence 4555555554 578888888888998876654321112334444443323333333333345555554443
No 407
>PRK07201 short chain dehydrogenase; Provisional
Probab=46.31 E-value=81 Score=33.09 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=44.5
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+++.+|+.++|.-|.++|..-...|.+++++...... ......++..|.+++.+..+....+.++.+.+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 440 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVK 440 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 3467888888999999999988889987776543211 12233455567777766544443455555544
No 408
>PRK08862 short chain dehydrogenase; Provisional
Probab=46.29 E-value=1.9e+02 Score=25.85 Aligned_cols=73 Identities=16% Similarity=0.082 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCC-Cc-eecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEec
Q 019047 192 LERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTP-NA-YMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAI 269 (347)
Q Consensus 192 ~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~-~~-~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pv 269 (347)
..-...+...|++|+.+..+ .+..+...+..++.+ .. .+.....++. .......++.+++++.+|++|.++
T Consensus 19 ~aia~~la~~G~~V~~~~r~---~~~l~~~~~~i~~~~~~~~~~~~D~~~~~----~~~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 19 RTISCHFARLGATLILCDQD---QSALKDTYEQCSALTDNVYSFQLKDFSQE----SIRHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHCCCEEEEEcCC---HHHHHHHHHHHHhcCCCeEEEEccCCCHH----HHHHHHHHHHHHhCCCCCEEEECC
Confidence 34455667789999988643 233333333222222 22 2222222332 345566678888754899999999
Q ss_pred Cc
Q 019047 270 GT 271 (347)
Q Consensus 270 G~ 271 (347)
|.
T Consensus 92 g~ 93 (227)
T PRK08862 92 TS 93 (227)
T ss_pred cc
Confidence 74
No 409
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.18 E-value=1.1e+02 Score=28.37 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=37.7
Q ss_pred CeEEEEeCCC--hhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assG--N~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
+..||+.+++ .-|.++|......|.+++++-.......+.+.+ +..|..+ .+..+.+..+.++.+.+..
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~-~~~~Dv~d~~~v~~~~~~~ 79 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDF-VLPCDVEDIASVDAVFEAL 79 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCce-EEeCCCCCHHHHHHHHHHH
Confidence 4556666664 689999999999999887754321112223333 3446443 3333333344455444433
No 410
>PRK12831 putative oxidoreductase; Provisional
Probab=46.12 E-value=79 Score=32.08 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=39.2
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC---CC--HHHHHHHHhcCCEEEEE
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TN--LERRILLRAFGAEIILT 208 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~---~~--~~~~~~l~~~GA~V~~~ 208 (347)
.|+.-++||.|.-+|..+..+|.+++++.... ++ ...+..++..|.+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 48999999999999999999999988876642 22 24445667788887753
No 411
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=45.90 E-value=1.5e+02 Score=26.54 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=27.8
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
+++.+|+.++|+-|.++|......|.+++++...
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 3577899999999999999988889987765443
No 412
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=45.83 E-value=2.1e+02 Score=28.63 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=70.0
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCcEEEEeCC-CCCH----HHHHHHHhcCCE-EEEECCCCChHHHH-HHHHHHHHc
Q 019047 156 KTVLVEPTTG-NTGLGIAFVAAVKGYKLIVTMPA-STNL----ERRILLRAFGAE-IILTDPEKGLRGAL-DKAEEIVLN 227 (347)
Q Consensus 156 ~~~vv~assG-N~g~AlA~aa~~~Gl~~~I~vp~-~~~~----~~~~~l~~~GA~-V~~~~~~~~~~~a~-~~a~~~a~~ 227 (347)
+++|+..|+| .+..++-|.-...|..++-|+-+ +++. .-.++...+||+ .+.++.. ++-+ +.+....+.
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~r---eeF~~~yi~~~i~a 81 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAR---EEFVEDYIFPAIKA 81 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecH---HHHHHHHHHHHHHh
Confidence 5678888888 89999999999999888766654 4431 224455678987 5566531 1222 222222222
Q ss_pred CCCceecCCCCChHHH-HHHHHHHHHHHHHhhCCCCCEEE-EecCcchHHHHHHHHHHhcCCCCeEEE
Q 019047 228 TPNAYMFQQFDNMANL-KIHFDSTGPEIWEDTLGCVDIFV-AAIGTGGTITGTGRFLKMMNKEIKVVG 293 (347)
Q Consensus 228 ~~~~~~~~~~~n~~~~-~~g~~ti~~Ei~~ql~~~~D~vv-~pvG~Gg~~~Gi~~~~k~~~~~~~vig 293 (347)
+..|-..|-+...+ .-=-.....|+.++. ..++|. .|+|-|-=.-=.-.+++.++|+.+||+
T Consensus 82 --na~Yeg~YpL~TalaRPLIak~lVe~A~k~--ga~avaHGcTGKGNDQvRFe~~~~al~p~lkiiA 145 (403)
T COG0137 82 --NALYEGVYPLGTALARPLIAKKLVEAAKKE--GADAVAHGCTGKGNDQVRFELAILALNPDLKIIA 145 (403)
T ss_pred --hceeeccccccchhhHHHHHHHHHHHHHHc--CCCEEEecCCCCCCceeeeeeehhhhCCCcEEEe
Confidence 34444433222111 001234445777775 234443 233433322222235555677777774
No 413
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=45.74 E-value=82 Score=27.88 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=25.1
Q ss_pred CCeEEEEeCCChhH---HHHHHHHHHcCCcEEEEeCCCCCH
Q 019047 155 GKTVLVEPTTGNTG---LGIAFVAAVKGYKLIVTMPASTNL 192 (347)
Q Consensus 155 g~~~vv~assGN~g---~AlA~aa~~~Gl~~~I~vp~~~~~ 192 (347)
++.+|+..++|... ..|+. +..+++++++++-++..-
T Consensus 71 ~r~vv~i~GDG~f~m~~~eL~T-a~~~~lpvi~vV~NN~~y 110 (196)
T cd02013 71 DRPVVAIAGDGAWGMSMMEIMT-AVRHKLPVTAVVFRNRQW 110 (196)
T ss_pred CCcEEEEEcchHHhccHHHHHH-HHHhCCCeEEEEEECchh
Confidence 35668888888544 44555 667889999888665443
No 414
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=45.47 E-value=1.6e+02 Score=25.96 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=38.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHH-HHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRI-LLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~-~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+..+|.-|.+++......|..+++... ...+.+ .....|.++.....+....+.++.+.
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGT---RVEKLEALAAELGERVKIFPANLSDRDEVKALG 71 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcC---CHHHHHHHHHHhCCceEEEEccCCCHHHHHHHH
Confidence 46788888999999999998889986554432 223333 23445666655543333344444443
No 415
>PRK06125 short chain dehydrogenase; Provisional
Probab=45.43 E-value=99 Score=27.95 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=40.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHh-cCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRA-FGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~-~~~~l~~-~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++........ ....++. .|.++.....+.+..+.++.+.+
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 57788888899999999998889997666543211111 1222332 36666655443333444554443
No 416
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=45.08 E-value=2e+02 Score=24.76 Aligned_cols=31 Identities=35% Similarity=0.429 Sum_probs=19.6
Q ss_pred CeEEEEeCCChhH---HHHHHHHHHcCCcEEEEe
Q 019047 156 KTVLVEPTTGNTG---LGIAFVAAVKGYKLIVTM 186 (347)
Q Consensus 156 ~~~vv~assGN~g---~AlA~aa~~~Gl~~~I~v 186 (347)
.+.++-++.||.| .++|+.-+..|++++|+.
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 5678888888664 344555556789888743
No 417
>PLN02686 cinnamoyl-CoA reductase
Probab=44.98 E-value=96 Score=30.22 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=28.4
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
++.+|+.++|--|.+++......|.++++++..
T Consensus 54 k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 54 RLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 577899999999999999999999998876654
No 418
>PRK12829 short chain dehydrogenase; Provisional
Probab=44.97 E-value=1.5e+02 Score=26.65 Aligned_cols=33 Identities=30% Similarity=0.236 Sum_probs=27.6
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
+++.+|+..+|.-|.++|......|.+++++..
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 357789999999999999999899998766554
No 419
>PRK06197 short chain dehydrogenase; Provisional
Probab=44.85 E-value=1.1e+02 Score=28.68 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=40.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHhc--CCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAF--GAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~-~~~~l~~~--GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|..-...|.+++++........ ..+.++.. +.++..+..+....+.++.+.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 87 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAAD 87 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHH
Confidence 46788888899999999988888998777655321111 12233322 4566655444333444444433
No 420
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=44.66 E-value=2.6e+02 Score=26.81 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=36.7
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~ 204 (347)
+.+.++.+.+|. ++|..|.+++..|+.+|.+.++++.. +..+...++.+|++
T Consensus 183 ~~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~~ 234 (367)
T cd08263 183 ADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGAT 234 (367)
T ss_pred ccCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCc
Confidence 334556676776 67999999999999999884444432 45566677778874
No 421
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=44.56 E-value=2.5e+02 Score=25.92 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
+...+.++...++...+|..|.+++..++..|.+++++.. +..+.+.++.+|...+
T Consensus 160 ~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~~~~~~ 215 (342)
T cd08266 160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAG---SEDKLERAKELGADYV 215 (342)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCeE
Confidence 3345566677777777788999999999999998655433 3445666666776433
No 422
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=44.53 E-value=36 Score=29.85 Aligned_cols=155 Identities=20% Similarity=0.225 Sum_probs=72.6
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHH-HHHHHh-cCCEEEEECCCCChHHHHHHHHHHHHcC--------
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER-RILLRA-FGAEIILTDPEKGLRGALDKAEEIVLNT-------- 228 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~-~~~l~~-~GA~V~~~~~~~~~~~a~~~a~~~a~~~-------- 228 (347)
|..-++|..|.++|..+...|++++++-+......+ .+.++. +...+. .+.. .+. ++.......
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~--~~~~--~~~--~~~~~~~~i~~~~dl~~ 75 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVR--KGRL--SQE--EADAALARISFTTDLEE 75 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHH--TTTT--THH--HHHHHHHTEEEESSGGG
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhh--hccc--hhh--hhhhhhhhcccccCHHH
Confidence 567788999999999999999999999775321111 111111 000000 1100 100 011111100
Q ss_pred -CCceecCCCCChHHHHHHHHHHHHHHHHhhCC--CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCC
Q 019047 229 -PNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE 305 (347)
Q Consensus 229 -~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~--~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~ 305 (347)
-++-++... -+..+. --. |++.++.. .+|.|++...++-.+.-++..+. ..-|++|.-....+
T Consensus 76 ~~~adlViEa-i~E~l~-~K~----~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~---~p~R~ig~Hf~~P~----- 141 (180)
T PF02737_consen 76 AVDADLVIEA-IPEDLE-LKQ----ELFAELDEICPPDTILASNTSSLSISELAAALS---RPERFIGMHFFNPP----- 141 (180)
T ss_dssp GCTESEEEE--S-SSHH-HHH----HHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSS---TGGGEEEEEE-SST-----
T ss_pred Hhhhheehhh-ccccHH-HHH----HHHHHHHHHhCCCceEEecCCCCCHHHHHhccC---cCceEEEEeccccc-----
Confidence 011111000 011111 222 44444433 57899998888777777666543 34578888764321
Q ss_pred CCCCCchhccccccCeEEE--eCHHHHHHHHHHHHHhcC
Q 019047 306 NAGYVPSILDVQLLDEVIK--VTNDEAVNMARRLALEEG 342 (347)
Q Consensus 306 ~~~~~p~~l~~~~vd~~v~--Vsd~ea~~a~~~La~~eG 342 (347)
.+ ...+ |++. -++++..+.+..|++.-|
T Consensus 142 -------~~-~~lV-Evv~~~~T~~~~~~~~~~~~~~~g 171 (180)
T PF02737_consen 142 -------HL-MPLV-EVVPGPKTSPETVDRVRALLRSLG 171 (180)
T ss_dssp -------TT---EE-EEEE-TTS-HHHHHHHHHHHHHTT
T ss_pred -------cc-CceE-EEeCCCCCCHHHHHHHHHHHHHCC
Confidence 11 1112 2222 378888999999988766
No 423
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=44.12 E-value=2.4e+02 Score=28.36 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=24.0
Q ss_pred EeCCChhHHHHHHHHHHcCCcEEEEeCCC
Q 019047 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (347)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~I~vp~~ 189 (347)
+.+-|.+..+|+.+-+..|.++.|++|.-
T Consensus 16 ~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 16 TGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred cCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 33447888899999889999999999974
No 424
>PRK07832 short chain dehydrogenase; Provisional
Probab=44.01 E-value=88 Score=28.63 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=32.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEE
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEI 205 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V 205 (347)
+.+|+.++|.-|.++|......|.+++++...... ......++..|+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~ 51 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTV 51 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence 46788888999999999999999987665443211 11233455566654
No 425
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=43.83 E-value=95 Score=31.11 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHhcCCEEEEEC
Q 019047 166 NTGLGIAFVAAVKGYKLIVTMPAST--NLERRIL----LRAFGAEIILTD 209 (347)
Q Consensus 166 N~g~AlA~aa~~~Gl~~~I~vp~~~--~~~~~~~----l~~~GA~V~~~~ 209 (347)
|.+++++.++..+|+++.++-|+.. .+..+.. .+..|+.+..+.
T Consensus 205 ~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 205 SVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 6789999999999999999999853 4443333 566799888765
No 426
>PRK08267 short chain dehydrogenase; Provisional
Probab=43.54 E-value=1.1e+02 Score=27.54 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=38.9
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-Hhc-CCEEEEECCCCChHHHHHHHHH
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAF-GAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~-GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+.+|+..+|.-|.++|......|.+++++... ..+...+ +.. |.++..+..+.+..+.+.++.+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 68 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDIN---EAGLAALAAELGAGNAWTGALDVTDRAAWDAALA 68 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 56888888999999999988899988776543 2333322 222 4555544433332344444433
No 427
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=43.37 E-value=34 Score=33.36 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=27.3
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
|..-++|+||.|||..++..|-++.++.-+
T Consensus 4 I~ViGaGswGTALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 4 IAVIGAGSWGTALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred EEEEcCChHHHHHHHHHHhcCCeeEEEecC
Confidence 788899999999999999999999988764
No 428
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=43.18 E-value=1.4e+02 Score=26.63 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=70.6
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHhcCCE-EEEECCCCChHHHHHHHHHHHHcC
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TNLERRILLRAFGAE-IILTDPEKGLRGALDKAEEIVLNT 228 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~---~~~~~~~~l~~~GA~-V~~~~~~~~~~~a~~~a~~~a~~~ 228 (347)
.+|+ .+..-++|.-+.++-++ +.+-.+.||--+. .-....+.++.||.+ |.++.++. -++.. .+. .
T Consensus 33 ~~g~-~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~---~~~--~ 102 (187)
T COG2242 33 RPGD-RLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALP---DLP--S 102 (187)
T ss_pred CCCC-EEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhc---CCC--C
Confidence 3444 47888888777777777 5555555554442 223345566778754 44555321 11111 111 3
Q ss_pred CCceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCC
Q 019047 229 PNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA 297 (347)
Q Consensus 229 ~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~ 297 (347)
++..|+.+..+...+. ..+++-+ ..-..+|+-+-+=-++..+...+++.+-. .|+-|+-.
T Consensus 103 ~daiFIGGg~~i~~il-------e~~~~~l-~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is 162 (187)
T COG2242 103 PDAIFIGGGGNIEEIL-------EAAWERL-KPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQIS 162 (187)
T ss_pred CCEEEECCCCCHHHHH-------HHHHHHc-CcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEee
Confidence 6888888775543332 1122333 23356777777777777777777776654 66655543
No 429
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=43.14 E-value=78 Score=31.83 Aligned_cols=97 Identities=25% Similarity=0.239 Sum_probs=56.8
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCC
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTP 229 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~ 229 (347)
+....|+ .|+..+.|+-|+.+|..++.+|.+++++=. ++.+.......|+++. + .+++ .+. .
T Consensus 190 ~~~l~Gk-~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~---dp~r~~~A~~~G~~v~--~----leea-------l~~-a 251 (406)
T TIGR00936 190 NLLIAGK-TVVVAGYGWCGKGIAMRARGMGARVIVTEV---DPIRALEAAMDGFRVM--T----MEEA-------AKI-G 251 (406)
T ss_pred CCCCCcC-EEEEECCCHHHHHHHHHHhhCcCEEEEEeC---ChhhHHHHHhcCCEeC--C----HHHH-------Hhc-C
Confidence 3333454 489999999999999999999998665422 2344445556687654 1 1222 122 2
Q ss_pred CceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchH
Q 019047 230 NAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGT 274 (347)
Q Consensus 230 ~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~ 274 (347)
+.++... .+. ..+..|.+.++ ++..+++-+|.+..
T Consensus 252 DVVItaT-G~~-------~vI~~~~~~~m--K~GailiN~G~~~~ 286 (406)
T TIGR00936 252 DIFITAT-GNK-------DVIRGEHFENM--KDGAIVANIGHFDV 286 (406)
T ss_pred CEEEECC-CCH-------HHHHHHHHhcC--CCCcEEEEECCCCc
Confidence 4433321 122 23334556655 45668888887654
No 430
>PRK05875 short chain dehydrogenase; Provisional
Probab=42.77 E-value=1.3e+02 Score=27.32 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=40.2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhc--CCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAF--GAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~--GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++...... ......+... +.++..+..+....+.+..+.+
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVD 78 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHH
Confidence 467888888999999999998999987766533111 1122333333 3466555443333344444433
No 431
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=42.74 E-value=84 Score=31.05 Aligned_cols=59 Identities=24% Similarity=0.252 Sum_probs=40.7
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHhc--------CCEEEEEC
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGY--KLIVTMPASTNLERRILLRAF--------GAEIILTD 209 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl--~~~I~vp~~~~~~~~~~l~~~--------GA~V~~~~ 209 (347)
...+++|++.+|...+|--|.+.+..|+.+|. ..+|.+ +..+.|++.++.+ |++...++
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 34566777777777789999999999999876 223333 2467788888776 77644443
No 432
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=42.71 E-value=1.4e+02 Score=28.06 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=30.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN 191 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~ 191 (347)
+++.+|+..+|.-|..++..-...|.++++.+.....
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTD 41 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 4578899999999999999988889998776665433
No 433
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=42.68 E-value=82 Score=29.32 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=24.1
Q ss_pred CeEEEEeCCChhH---HHHHHHHHHcCCcEEEEeCCC
Q 019047 156 KTVLVEPTTGNTG---LGIAFVAAVKGYKLIVTMPAS 189 (347)
Q Consensus 156 ~~~vv~assGN~g---~AlA~aa~~~Gl~~~I~vp~~ 189 (347)
.+++|.++.||.| .++|+.-...|+++.||.++.
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 97 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQ 97 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCC
Confidence 3567888887653 456666666799999998653
No 434
>PRK06914 short chain dehydrogenase; Provisional
Probab=42.62 E-value=2e+02 Score=26.15 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=27.2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
++.+|+.++|-.|.++|..-...|.+++++...
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 466888889999999999988889988776543
No 435
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=42.57 E-value=1.6e+02 Score=28.14 Aligned_cols=55 Identities=31% Similarity=0.436 Sum_probs=40.8
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~ 204 (347)
.+.+.+++|.++++-+.+|--|..+-..|+..|-.++.... ..+|.+....+|++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~ 193 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAE 193 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCc
Confidence 35667888999999999999999888888877765554433 45666666667766
No 436
>PRK07024 short chain dehydrogenase; Provisional
Probab=42.39 E-value=1.3e+02 Score=27.10 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=40.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH----HHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL----LRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~----l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+.++|--|.++|......|.+++++... ..+... +...+ ++..+..+.+..+.+.++.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~ 71 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARR---TDALQAFAARLPKAA-RVSVYAADVRDADALAAAAAD 71 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHH
Confidence 467888889999999999988899987766543 222222 22223 666655444444555555443
No 437
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=42.37 E-value=82 Score=28.33 Aligned_cols=91 Identities=22% Similarity=0.302 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHH----HHhhC------CCCCEEEEecC-cchHHHHHH----HHHHhcCCCCeEE--EEcCCCCccccC
Q 019047 242 NLKIHFDSTGPEI----WEDTL------GCVDIFVAAIG-TGGTITGTG----RFLKMMNKEIKVV--GVEPAERSVISG 304 (347)
Q Consensus 242 ~~~~g~~ti~~Ei----~~ql~------~~~D~vv~pvG-~Gg~~~Gi~----~~~k~~~~~~~vi--gVep~~~~~~~g 304 (347)
+|..|+.+++.++ .+++. ...|.|++..| +|||=+|++ ..+++.+|+..++ +|-|... .+
T Consensus 94 n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~---e~ 170 (216)
T PF00091_consen 94 NWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSS---EG 170 (216)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGG---GS
T ss_pred cccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecccccccc---cc
Confidence 3445777654333 33221 35676666644 233344444 4666666665554 4556521 11
Q ss_pred CCCCC---CchhccccccCeEEEeCHHHHHHHHH
Q 019047 305 ENAGY---VPSILDVQLLDEVIKVTNDEAVNMAR 335 (347)
Q Consensus 305 ~~~~~---~p~~l~~~~vd~~v~Vsd~ea~~a~~ 335 (347)
..... ....-..+..|.++-++.+...+.+.
T Consensus 171 ~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~ 204 (216)
T PF00091_consen 171 VVEPYNALLSLSELQEYADSVILFDNDALYKICK 204 (216)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHH
T ss_pred ccccceehhHHHHHHHhCCEEEEEcHHHHHHHHh
Confidence 00000 01112245678888888887766553
No 438
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=42.23 E-value=2.7e+02 Score=25.41 Aligned_cols=54 Identities=30% Similarity=0.446 Sum_probs=37.9
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V 205 (347)
.+.+.++.+.++...+|..|.+++..++..|.+++++.. +..+...++.+|++-
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 192 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTR---TSEKRDALLALGAAH 192 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCCE
Confidence 445556667677666799999999999999988655533 345666666677643
No 439
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=42.21 E-value=1.3e+02 Score=28.48 Aligned_cols=73 Identities=18% Similarity=0.056 Sum_probs=43.5
Q ss_pred CeEEEEeCCChhHHH----HHHHHHHcCCcEEEEeCCCC-----C-------HHHHHHHHhcCCEEEEECCCC--ChHHH
Q 019047 156 KTVLVEPTTGNTGLG----IAFVAAVKGYKLIVTMPAST-----N-------LERRILLRAFGAEIILTDPEK--GLRGA 217 (347)
Q Consensus 156 ~~~vv~assGN~g~A----lA~aa~~~Gl~~~I~vp~~~-----~-------~~~~~~l~~~GA~V~~~~~~~--~~~~a 217 (347)
...++..+.|-++.. .-..|...++++++++-.+. + +.--...+.+|...+.+++.. ....+
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a 206 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEA 206 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHH
Confidence 456777777755432 23447788999887776541 1 122345677888888887542 12235
Q ss_pred HHHHHHHHHcC
Q 019047 218 LDKAEEIVLNT 228 (347)
Q Consensus 218 ~~~a~~~a~~~ 228 (347)
+++|.+.+++.
T Consensus 207 ~~~A~~~ar~~ 217 (293)
T cd02000 207 AKEAVERARAG 217 (293)
T ss_pred HHHHHHHHHcc
Confidence 56666665543
No 440
>PRK06202 hypothetical protein; Provisional
Probab=42.08 E-value=35 Score=30.87 Aligned_cols=38 Identities=16% Similarity=0.353 Sum_probs=30.0
Q ss_pred CCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCC
Q 019047 262 VDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAER 299 (347)
Q Consensus 262 ~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~ 299 (347)
..++=++||+|.+...+...+++.+++.+|+|||+...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 35777889999887777777766677789999999753
No 441
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=41.93 E-value=2.9e+02 Score=28.28 Aligned_cols=30 Identities=23% Similarity=0.117 Sum_probs=26.7
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
|..-++|+.|.++|......|++++++-+.
T Consensus 7 IavIG~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 7 AACIGGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 666799999999999999999999998664
No 442
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.87 E-value=3.2e+02 Score=26.31 Aligned_cols=73 Identities=23% Similarity=0.176 Sum_probs=50.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHhcCCEEE--EECCCCChHHHHHHHHHHHHcCC
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA-STNLERRILLRAFGAEII--LTDPEKGLRGALDKAEEIVLNTP 229 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~-~~~~~~~~~l~~~GA~V~--~~~~~~~~~~a~~~a~~~a~~~~ 229 (347)
|+..+++.+++--|+++|.-.++.|-+.++.--. ..-.+..+.++..| ++. .++-+ +.++-.+.|.++-++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 4567777777889999999999999866554333 44567777887777 554 44532 35666677777777664
No 443
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.85 E-value=1.4e+02 Score=27.66 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=37.0
Q ss_pred CeEEEEeCC--ChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HhcCCE-EEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAE-IILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~GA~-V~~~~~~~~~~~a~~~a~~~a 225 (347)
+..+|+.++ +--|.++|......|.++++.-.......+.+.+ +.+|.+ .+.+| .+..+.++.+.+..
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~D--v~d~~~v~~~~~~i 77 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELD--VSKPEHFKSLAESL 77 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEec--CCCHHHHHHHHHHH
Confidence 455555554 4578889988888999877754332112334433 445654 33344 22234555544433
No 444
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.78 E-value=2.8e+02 Score=25.43 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=39.8
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+.++.+.++...+|..|.+++..++.+|+++++.. ...+.+.++.+|++-+.
T Consensus 135 ~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~----~~~~~~~~~~~g~~~~~ 190 (325)
T cd08271 135 KKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC----SKRNFEYVKSLGADHVI 190 (325)
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE----cHHHHHHHHHcCCcEEe
Confidence 345566777777777778899999999999999855432 33566777778875443
No 445
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.45 E-value=1.5e+02 Score=27.35 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=37.4
Q ss_pred CeEEEEeCC--ChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++ +.-|.++|......|.++++.-.......+.+.+ +.+|. +..+..+.+..+.++.+.+..
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~v~~~~~~~ 82 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVTDEASIDAVFETL 82 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCCCHHHHHHHHHHH
Confidence 455565554 5799999999999999876653221112344444 34464 222333333344555554433
No 446
>PRK07060 short chain dehydrogenase; Provisional
Probab=41.45 E-value=2.2e+02 Score=25.07 Aligned_cols=51 Identities=22% Similarity=0.220 Sum_probs=36.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH-HHhcCCEEEEEC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAFGAEIILTD 209 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~-l~~~GA~V~~~~ 209 (347)
++.+|+..+|.-|..++......|.+++++... ..+... ....+.+++..+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D 61 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLD 61 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEec
Confidence 467888888999999999999999987665442 233333 344577777665
No 447
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=41.40 E-value=1.4e+02 Score=28.22 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=39.6
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+++.+|+.++|--|.++|..-...|.+++++....... .....++..+.++..+..+.+..+.++.+.+
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVD 75 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHH
Confidence 35678888889899999998888898876664331111 1122233334555554433333344444433
No 448
>PRK06482 short chain dehydrogenase; Provisional
Probab=41.37 E-value=1.9e+02 Score=26.35 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=40.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-hcCCEEEEECCCCChHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILTDPEKGLRGALDKA 221 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a 221 (347)
++.+|+.++|.-|.++|..-...|.+++++... ..+...+. ..+.++..+..+.+..+.+..+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 66 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRR---PDALDDLKARYGDRLWVLQLDVTDSAAVRAV 66 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhccCceEEEEccCCCHHHHHHH
Confidence 356888889999999999988899988776653 33333332 3355555554433334444444
No 449
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=41.22 E-value=2.8e+02 Score=25.19 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=24.2
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEe
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~v 186 (347)
..+|+..+|.-|.++|......|.++++..
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~~V~~~~ 32 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGYRVVLHY 32 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCCeEEEEc
Confidence 457788888999999999888888876654
No 450
>PRK07825 short chain dehydrogenase; Provisional
Probab=41.22 E-value=1.8e+02 Score=26.41 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=38.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH-HHhcC-CEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAFG-AEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~-l~~~G-A~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+..+|.-|.++|......|.+++++.. +..+... .+..+ .+++.++ .+..+.++.+.+
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r---~~~~~~~~~~~~~~~~~~~~D--~~~~~~~~~~~~ 70 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDL---DEALAKETAAELGLVVGGPLD--VTDPASFAAFLD 70 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHHhccceEEEcc--CCCHHHHHHHHH
Confidence 46788888999999999998889998766543 2333322 23334 4444444 222344444444
No 451
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=41.19 E-value=35 Score=31.99 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=26.3
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
-|+..++|-.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 4789999999999999999999999998664
No 452
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=41.09 E-value=4e+02 Score=28.88 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhCC---CCCEEEEe-cC-cchHHHHHHHHHHhc---CCCC--eEEEEcCCCCccccC---CCCCCCchh
Q 019047 247 FDSTGPEIWEDTLG---CVDIFVAA-IG-TGGTITGTGRFLKMM---NKEI--KVVGVEPAERSVISG---ENAGYVPSI 313 (347)
Q Consensus 247 ~~ti~~Ei~~ql~~---~~D~vv~p-vG-~Gg~~~Gi~~~~k~~---~~~~--~vigVep~~~~~~~g---~~~~~~p~~ 313 (347)
...++++|++.++- ++++|-|| || |-.++..+...+++. .+.+ -|.|+=..+..-+.. +..|..|..
T Consensus 614 ~~~~~~~ILQ~~~~R~~kte~isCPgCGRT~~dlq~~~~~I~~~~~hl~GvkiavMGCIVNGPGEmadAd~GyVG~gpgK 693 (733)
T PLN02925 614 LRNTSFGLLQGCRMRNTKTEYVSCPSCGRTLFDLQEVSAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGK 693 (733)
T ss_pred HHHHHHHHHHHhCccccCCeEEECCCCCCccccHHHHHHHHHHHhhcCCCceEEEEeeeecCCccccccccceeccCCCe
Confidence 45789999988752 67777777 33 334455555555543 3333 344543332211111 223444444
Q ss_pred ccccccCeEEE--eCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIK--VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~--Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+....--++|. |+++||.+...+|.+..|-.+.|
T Consensus 694 I~LYvgKecV~~nIpeeeAvd~LIeLIKe~G~Wvdp 729 (733)
T PLN02925 694 IDLYVGKEVVKRGIAMEEATDALIQLIKDHGRWVDP 729 (733)
T ss_pred eEEEecceehhcCCCHHHHHHHHHHHHHHcCcccCC
Confidence 44333345555 89999999999999999987765
No 453
>PLN03139 formate dehydrogenase; Provisional
Probab=40.89 E-value=2.4e+02 Score=28.07 Aligned_cols=115 Identities=10% Similarity=0.029 Sum_probs=66.7
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
++|..-+.|+.|.++|..++.||.+++++=+...+. ...+..|++. +. ++++ +..+- +...++-
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~---~~~~~~g~~~--~~---~l~e-------ll~~s-DvV~l~l 263 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDP---ELEKETGAKF--EE---DLDA-------MLPKC-DVVVINT 263 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcch---hhHhhcCcee--cC---CHHH-------HHhhC-CEEEEeC
Confidence 357888899999999999999999987654332222 2223445432 11 1222 22222 4554432
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHH--HHHHHHHhcCCCCeEEEEc
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT--GTGRFLKMMNKEIKVVGVE 295 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~--Gi~~~~k~~~~~~~vigVe 295 (347)
-.++. -...+..|++.++ +++.+++-+|-|+.+- .+..+++. ....-.+.+
T Consensus 264 Plt~~----T~~li~~~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s--G~l~GAaLD 316 (386)
T PLN03139 264 PLTEK----TRGMFNKERIAKM--KKGVLIVNNARGAIMDTQAVADACSS--GHIGGYGGD 316 (386)
T ss_pred CCCHH----HHHHhCHHHHhhC--CCCeEEEECCCCchhhHHHHHHHHHc--CCceEEEEc
Confidence 12222 2233566777776 5789999999999864 44445543 234434443
No 454
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=40.80 E-value=37 Score=28.58 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=26.5
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~ 189 (347)
++..++|.-+.+++..++.+|++++++=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4678999999999999999999999998874
No 455
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=40.72 E-value=2e+02 Score=26.54 Aligned_cols=58 Identities=21% Similarity=0.416 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.+.++.+.++...+|..|.+++..|+.+ ..++++.. ..+.+.+.++.+|++.+..
T Consensus 132 ~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~--~~~~~~~~-~~~~~~~~~~~~g~~~~~~ 189 (337)
T cd08275 132 ELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV--PNVTVVGT-ASASKHEALKENGVTHVID 189 (337)
T ss_pred HhhCCCCCCEEEEEcCcchHHHHHHHHHHHc--cCcEEEEe-CCHHHHHHHHHcCCcEEee
Confidence 3455667777777766799999999999988 22233332 2456777778889865443
No 456
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=40.55 E-value=1.8e+02 Score=22.75 Aligned_cols=47 Identities=30% Similarity=0.251 Sum_probs=30.8
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
++..+.|+.|..++..-...+.+++++-. ++.+...++..|.+++.-
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhcccccccc
Confidence 35667788888888887776656666544 455666777777665553
No 457
>PRK09135 pteridine reductase; Provisional
Probab=40.52 E-value=1.9e+02 Score=25.59 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=42.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHh-cCCEEEEECCCCChHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRA-FGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~--~~~~~l~~-~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
++.+|+..+|.-|..++..-...|.+++++....... .....++. .+..++.+..+.+..+.++.+.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 4678888899999999999888999988876543221 11122333 244555555444434555555443
No 458
>PRK07550 hypothetical protein; Provisional
Probab=40.22 E-value=3.1e+02 Score=26.54 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=44.4
Q ss_pred CCchhHHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 131 CRSVKDRIGYSMITDAEESGD-ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 131 tGSfK~Rga~~~~~~a~~~G~-~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
.|....|-+...-. ....|. +.+ .. |+.+++++.+..++..+- .+-.-.|+++.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~-~~~~g~~~~~-~~-i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHY-SRLYGAAISP-EQ-VHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHH-HHHhCCCCCc-ce-EEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 47777776655433 223332 222 23 555666677776665553 34445677776443444556788999999887
Q ss_pred C
Q 019047 210 P 210 (347)
Q Consensus 210 ~ 210 (347)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 4
No 459
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=40.19 E-value=1.4e+02 Score=27.64 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=58.0
Q ss_pred HHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH-HHHcCCCcee---cCCCCChHH
Q 019047 169 LGIAFVAAVK--GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE-IVLNTPNAYM---FQQFDNMAN 242 (347)
Q Consensus 169 ~AlA~aa~~~--Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~-~a~~~~~~~~---~~~~~n~~~ 242 (347)
..+.++++.+ |.+..-+-..+.-..-.+.....|.+|.++++. .+..+.+.+ +.+++ +... -++|-++.
T Consensus 70 ~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~---~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~- 144 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGK---PEVLAQTEAKLRTQW-NVNIVGSQDGYFTPE- 144 (243)
T ss_pred HHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCC---HHHHHHHHHHHHHHh-CCEEEEEeCCCCCHH-
Confidence 4566666655 433111111111223344456678899999864 344444444 33444 4332 24554322
Q ss_pred HHHHHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC
Q 019047 243 LKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG 304 (347)
Q Consensus 243 ~~~g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g 304 (347)
-.. +|.+++. ..+|.|+++.|.-===. ...-.+...+..-++||-. .-...+|
T Consensus 145 ---e~~----~i~~~I~~s~~dil~VglG~PkQE~-~~~~~~~~~~~~v~~gvGg-~fD~~aG 198 (243)
T PRK03692 145 ---QRQ----ALFERIHASGAKIVTVAMGSPKQEI-FMRDCRLVYPDALYMGVGG-TYDVFTG 198 (243)
T ss_pred ---HHH----HHHHHHHhcCCCEEEEECCCcHHHH-HHHHHHHhCCCCEEEEeCe-EEEEecC
Confidence 112 2344442 37999999998753100 1122233333344666643 2234454
No 460
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=40.13 E-value=1.7e+02 Score=28.51 Aligned_cols=73 Identities=19% Similarity=0.072 Sum_probs=43.5
Q ss_pred CCeEEEEeCCChhH--H---HHHHHHHHcCCcEEEEeCCCC------------CHHHHHHHHhcCCEEEEECCCCCh--H
Q 019047 155 GKTVLVEPTTGNTG--L---GIAFVAAVKGYKLIVTMPAST------------NLERRILLRAFGAEIILTDPEKGL--R 215 (347)
Q Consensus 155 g~~~vv~assGN~g--~---AlA~aa~~~Gl~~~I~vp~~~------------~~~~~~~l~~~GA~V~~~~~~~~~--~ 215 (347)
+..+++..+.|-+. . ++. .|...++++++++-.+. ...-....+.||...+.+++...+ .
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Ealn-~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~ 235 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFECLN-MAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVR 235 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHHHH-HHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHH
Confidence 34556666667443 2 233 36678999888777653 122355668889999988865311 1
Q ss_pred HHHHHHHHHHHcC
Q 019047 216 GALDKAEEIVLNT 228 (347)
Q Consensus 216 ~a~~~a~~~a~~~ 228 (347)
.++..|.+.+.+.
T Consensus 236 ~a~~~A~~~ar~~ 248 (341)
T CHL00149 236 EVAKEAVERARQG 248 (341)
T ss_pred HHHHHHHHHHHhC
Confidence 2445666665554
No 461
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=40.05 E-value=2e+02 Score=26.90 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=36.8
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKG-YKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~G-l~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+|...+|.-|.+++..|+.+| .+++++.. +..+.+.++.+|++.++
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~---~~~~~~~~~~~g~~~~~ 200 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATAS---RPESIAWVKELGADHVI 200 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcC---ChhhHHHHHhcCCcEEE
Confidence 6677777668999999999999999 77655433 34566667788886544
No 462
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=39.71 E-value=76 Score=31.57 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=38.4
Q ss_pred CchhHHHHHHHHHH----HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 132 RSVKDRIGYSMITD----AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 132 GSfK~Rga~~~~~~----a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
|.+..-.|.+.+.. +...|....| ++|-.-+.||-|..+|..++.+|+++.++=|
T Consensus 89 g~na~aVAE~~~~~lL~l~r~~g~~L~g-ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp 147 (378)
T PRK15438 89 GCNAIAVVEYVFSSLLMLAERDGFSLHD-RTVGIVGVGNVGRRLQARLEALGIKTLLCDP 147 (378)
T ss_pred CcCchHHHHHHHHHHHHHhccCCCCcCC-CEEEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence 45555555544432 2333433334 4588899999999999999999999998865
No 463
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=39.41 E-value=2.1e+02 Score=26.91 Aligned_cols=48 Identities=31% Similarity=0.318 Sum_probs=34.1
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCE
Q 019047 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (347)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~ 204 (347)
+++++++.+ +|..|.+++..|+.+|++.++++.. +..+...++.+|++
T Consensus 165 ~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~~~~~--s~~~~~~~~~~g~~ 212 (339)
T cd08232 165 AGKRVLVTG-AGPIGALVVAAARRAGAAEIVATDL--ADAPLAVARAMGAD 212 (339)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCC
Confidence 566777754 6888999999999999954444432 45566677778874
No 464
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.39 E-value=1.7e+02 Score=27.94 Aligned_cols=70 Identities=26% Similarity=0.359 Sum_probs=47.6
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHH-HHHHhcC-CE-EEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR-ILLRAFG-AE-IILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~-~~l~~~G-A~-V~~~~~~~~~~~a~~~a~~~a 225 (347)
+..+|+..|.--|.++|+.-...|.+.++++...-...++ +.++..| .+ |+..+.|-+-.+.+..+.+.+
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHH
Confidence 3566666667789999999999999999998876666666 6665554 44 676665443334444444433
No 465
>PRK05854 short chain dehydrogenase; Provisional
Probab=39.39 E-value=1.4e+02 Score=28.18 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=25.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
++.+|+.+++--|.++|..-...|.++++...
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 46788888888999999988888988777654
No 466
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=39.07 E-value=59 Score=28.28 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=67.8
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceec-C
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMF-Q 235 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~-~ 235 (347)
++|..-+.|+-|+++|..++.||.+++.+-+...+.. ....+|.+.. ++++.+..+ +...+ .
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~~------~l~ell~~a--------Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEYV------SLDELLAQA--------DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEES------SHHHHHHH---------SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hcccccceee------ehhhhcchh--------hhhhhhh
Confidence 4578889999999999999999999998887643222 3344454222 233333222 34433 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHH--HHHHHHHhcCCCCeEEEEcC
Q 019047 236 QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT--GTGRFLKMMNKEIKVVGVEP 296 (347)
Q Consensus 236 ~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~--Gi~~~~k~~~~~~~vigVep 296 (347)
+. ++.. ...+..|.++++ +++.+++-+|-|+.+- ++..++++ ....-.+.+.
T Consensus 100 pl-t~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV 153 (178)
T PF02826_consen 100 PL-TPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDV 153 (178)
T ss_dssp SS-STTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS
T ss_pred cc-cccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEEC
Confidence 22 2211 123455677777 5789999999998764 45556654 3344455543
No 467
>PRK06348 aspartate aminotransferase; Provisional
Probab=39.02 E-value=3.4e+02 Score=26.31 Aligned_cols=77 Identities=8% Similarity=-0.022 Sum_probs=42.9
Q ss_pred CCCCchhHHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 129 EPCRSVKDRIGYSMITDAEESGD-ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 129 ~ptGSfK~Rga~~~~~~a~~~G~-~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.|..-.|-+...... .+.|. +.+. -|+.++++.+|..++..+- .+-.-.|+++.-.-..-...++..|++++.
T Consensus 64 ~~~G~~~lr~~ia~~~~-~~~~~~~~~~--~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~ 139 (384)
T PRK06348 64 DSGGDVELIEEIIKYYS-KNYDLSFKRN--EIMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTPYKDQIEMVGGKPII 139 (384)
T ss_pred CCCCcHHHHHHHHHHHH-HHhCCCCChh--hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEE
Confidence 34566566655554322 22232 2332 3666777788777666653 222234555654444456677778999888
Q ss_pred EC
Q 019047 208 TD 209 (347)
Q Consensus 208 ~~ 209 (347)
++
T Consensus 140 ~~ 141 (384)
T PRK06348 140 LE 141 (384)
T ss_pred ec
Confidence 75
No 468
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=38.89 E-value=1.6e+02 Score=28.17 Aligned_cols=33 Identities=24% Similarity=0.134 Sum_probs=28.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
++.+|+.++|.-|.+++..-...|.+++++...
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence 577888899999999999999999998876544
No 469
>PRK06484 short chain dehydrogenase; Validated
Probab=38.88 E-value=1.6e+02 Score=29.81 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=42.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
+++.+|+.+++.-|.++|..-...|.+++++-.. ........+..|.++..+..+.+..+.++.+.+.
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARAGDQVVVADRN--VERARERADSLGPDHHALAMDVSDEAQIREGFEQ 72 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHH
Confidence 3577888888889999999998999887665332 2222234455677775554433334455554443
No 470
>PRK09186 flagellin modification protein A; Provisional
Probab=38.79 E-value=1.7e+02 Score=26.08 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=27.7
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
+++.+|+..+|.-|.++|......|.+++++..
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEec
Confidence 357788888999999999999999998777644
No 471
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=38.55 E-value=46 Score=30.00 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=27.7
Q ss_pred EEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCC
Q 019047 264 IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA 297 (347)
Q Consensus 264 ~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~ 297 (347)
.+|...|+|+|+.+|..+++....+.+|.+|=.+
T Consensus 3 i~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd 36 (200)
T COG0299 3 IAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISD 36 (200)
T ss_pred EEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeC
Confidence 5788899999999999999866557778777544
No 472
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=38.42 E-value=1.7e+02 Score=30.38 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=64.6
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
+++..-+-|+-|.++|..++.||++++.|=|.. +.. ....+|.+.. + +++ +.++- +...++-
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~---~~~~~g~~~~--~----l~e-------ll~~a-DiV~l~l 202 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPE---RAAQLGVELV--S----LDE-------LLARA-DFITLHT 202 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-Chh---HHHhcCCEEE--c----HHH-------HHhhC-CEEEEcc
Confidence 457888999999999999999999988886642 222 2344666533 1 222 22222 4544432
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHH--HHHHHHHh
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT--GTGRFLKM 284 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~--Gi~~~~k~ 284 (347)
-.++.. ...+..|.++++ +++.+++-+|-|+.+- ++..+++.
T Consensus 203 P~t~~t----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPET----RGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChHh----hcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 222221 223456777776 6789999999999854 44455554
No 473
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=38.38 E-value=1.5e+02 Score=28.06 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=38.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcC-CcEEEEeCCCCCH-HHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKG-YKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~G-l~~~I~vp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.+++--|.++|......| .+++++....... ...+.+...+.++..+..+.+..+.++.+.+
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 73 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQ 73 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 466788878888999998888889 8777664432111 1122233345566655443333344444433
No 474
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=38.32 E-value=1.2e+02 Score=24.26 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=46.5
Q ss_pred HHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-CCCCCCCchhccccccCeEEEeCHH
Q 019047 250 TGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-GENAGYVPSILDVQLLDEVIKVTND 328 (347)
Q Consensus 250 i~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-g~~~~~~p~~l~~~~vd~~v~Vsd~ 328 (347)
.+.++.+++ +...||+..-+|.++--++ +..|.+.|+++.+...-... ....|..|........+ .+
T Consensus 7 aa~~~A~~~--~ak~Ivv~T~sG~ta~~is----k~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~~~------~~ 74 (117)
T PF02887_consen 7 AAVELAEDL--NAKAIVVFTESGRTARLIS----KYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEFDKD------TE 74 (117)
T ss_dssp HHHHHHHHH--TESEEEEE-SSSHHHHHHH----HT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHSHS------HH
T ss_pred HHHHHHHhc--CCCEEEEECCCchHHHHHH----hhCCCCeEEEEcCcHHHHhhhhcccceEEEEecccccc------HH
Confidence 345666666 4678999999999865544 44688999999987531100 01222333211111112 56
Q ss_pred HHHHHHHHHHHhcCc
Q 019047 329 EAVNMARRLALEEGL 343 (347)
Q Consensus 329 ea~~a~~~La~~eGI 343 (347)
+.++.+..++++.|+
T Consensus 75 ~~~~~a~~~~~~~g~ 89 (117)
T PF02887_consen 75 ELIAEALEYAKERGL 89 (117)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCC
Confidence 666667777767776
No 475
>PRK12742 oxidoreductase; Provisional
Probab=38.30 E-value=2e+02 Score=25.29 Aligned_cols=52 Identities=25% Similarity=0.203 Sum_probs=35.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH-HHhcCCEEEEEC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAFGAEIILTD 209 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~-l~~~GA~V~~~~ 209 (347)
++.+|+.++|.-|.++|......|.++++....+ ..+.+. ....|.+.+..+
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~~D 59 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQETGATAVQTD 59 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHhCCeEEecC
Confidence 5678888889999999999888999877654332 222322 344577766555
No 476
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=38.16 E-value=1.5e+02 Score=27.02 Aligned_cols=51 Identities=18% Similarity=0.059 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 137 RIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 137 Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
+|....+..+.+.-........++.-+-||-|..+|......|.+++.+..
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD 54 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSD 54 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEc
Confidence 456666666544322222335689999999999999999999887776554
No 477
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=38.02 E-value=1.9e+02 Score=27.67 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
+.+.+|+.++|--|..++......|.+++++...
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3577888889999999999998899998876543
No 478
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=37.83 E-value=3.3e+02 Score=28.41 Aligned_cols=91 Identities=19% Similarity=0.118 Sum_probs=61.7
Q ss_pred EEEEeCCCCCCCchhHHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Q 019047 121 VAAKLESMEPCRSVKDRIGYSMITDAEESGD-ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR 199 (347)
Q Consensus 121 Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~-~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~ 199 (347)
|+-..++.+.|.+-=...+.-.+....+.|. ++.|+.+.+.+.-.-+-..++++|-..|....-.=|.....+...+++
T Consensus 37 i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~ 116 (537)
T KOG1176|consen 37 VYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLK 116 (537)
T ss_pred EEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHH
Confidence 4444333445533323333334444555453 556666666666677778888889999988777777777888899999
Q ss_pred hcCCEEEEECCC
Q 019047 200 AFGAEIILTDPE 211 (347)
Q Consensus 200 ~~GA~V~~~~~~ 211 (347)
.-++++++++.+
T Consensus 117 ~s~~kiif~d~~ 128 (537)
T KOG1176|consen 117 DSKPKLIFVDED 128 (537)
T ss_pred hcCCeEEEEcCc
Confidence 999999999854
No 479
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=37.78 E-value=2.7e+02 Score=26.78 Aligned_cols=104 Identities=11% Similarity=0.049 Sum_probs=61.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
++|..-+-|+-|..+|..++.||+++++|=+..... .|.+.. .+. ..++ ++.++- +...+.-
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------~~~~~~--~~~----~~l~---e~l~~a-Dvvv~~l 198 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------PGVQSF--AGR----EELS---AFLSQT-RVLINLL 198 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------CCceee--ccc----ccHH---HHHhcC-CEEEECC
Confidence 457888999999999999999999998875532110 122211 110 1121 223332 4444322
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHH--HHHHHHHHh
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI--TGTGRFLKM 284 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~--~Gi~~~~k~ 284 (347)
-.++.. ...+..+.++++ +++.+++-+|=|+.+ .++..++++
T Consensus 199 Plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 199 PNTPET----VGIINQQLLEQL--PDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred CCCHHH----HHHhHHHHHhcC--CCCcEEEECCCccccCHHHHHHHHhc
Confidence 222322 234566777777 568899999999885 344455554
No 480
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=37.72 E-value=2e+02 Score=26.99 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=28.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
+++.+|+.++|--|.+++......|.+++++...
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcC
Confidence 3577888889999999999998999998776544
No 481
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=37.65 E-value=2.6e+02 Score=24.07 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCCceec----CCCCChHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCCC
Q 019047 215 RGALDKAEEIVLNTPNAYMF----QQFDNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEI 289 (347)
Q Consensus 215 ~~a~~~a~~~a~~~~~~~~~----~~~~n~~~~~~g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~ 289 (347)
....+++.+..++. |..|- .-+-++.. ..++.+.+. ..+|+||+..|.-+.+.|+..++- ..
T Consensus 13 ~~~~~~a~~~L~~~-gi~~~~~V~saHR~p~~--------l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t----~~ 79 (150)
T PF00731_consen 13 LPIAEEAAKTLEEF-GIPYEVRVASAHRTPER--------LLEFVKEYEARGADVIIAVAGMSAALPGVVASLT----TL 79 (150)
T ss_dssp HHHHHHHHHHHHHT-T-EEEEEE--TTTSHHH--------HHHHHHHTTTTTESEEEEEEESS--HHHHHHHHS----SS
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEEeccCCHHH--------HHHHHHHhccCCCEEEEEECCCcccchhhheecc----CC
Confidence 34567777777776 44332 11112222 224444443 357899999999888899888763 46
Q ss_pred eEEEEcCC
Q 019047 290 KVVGVEPA 297 (347)
Q Consensus 290 ~vigVep~ 297 (347)
.||||-+.
T Consensus 80 PVIgvP~~ 87 (150)
T PF00731_consen 80 PVIGVPVS 87 (150)
T ss_dssp -EEEEEE-
T ss_pred CEEEeecC
Confidence 79999544
No 482
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=37.60 E-value=1.6e+02 Score=25.57 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=25.3
Q ss_pred CCeEEEEeCCChhHHHHH--HHHHHcCCcEEEEeCCCC
Q 019047 155 GKTVLVEPTTGNTGLGIA--FVAAVKGYKLIVTMPAST 190 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA--~aa~~~Gl~~~I~vp~~~ 190 (347)
+..++...++|.....+. ..+.+++++.++++=.+-
T Consensus 66 ~~~vv~i~GDG~f~m~~~eL~ta~~~~l~vi~vV~NN~ 103 (177)
T cd02010 66 DRKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDN 103 (177)
T ss_pred CCcEEEEEcchHHHhHHHHHHHHHHHCCCeEEEEEECC
Confidence 346788888887766653 336788999988776653
No 483
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=37.55 E-value=86 Score=35.28 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=28.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~ 188 (347)
+.|+..++|-.|.+.|++.+..|.+++||=..
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 34899999999999999999999999998653
No 484
>PRK09126 hypothetical protein; Provisional
Probab=37.50 E-value=41 Score=32.70 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=26.7
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
|+..++|-.|.++|.+.++.|++++|+=-
T Consensus 6 viIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 6 IVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 78899999999999999999999998854
No 485
>PLN00198 anthocyanidin reductase; Provisional
Probab=37.50 E-value=2e+02 Score=27.20 Aligned_cols=37 Identities=27% Similarity=0.175 Sum_probs=29.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL 192 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~ 192 (347)
++.+|+.++|--|..|+......|.+++++.......
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~ 46 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQ 46 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCH
Confidence 5678899999999999999988999887666554333
No 486
>PRK07041 short chain dehydrogenase; Provisional
Probab=37.49 E-value=1.1e+02 Score=26.84 Aligned_cols=62 Identities=23% Similarity=0.197 Sum_probs=37.5
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-Hh--cCCEEEEECCCCChHHHHHHHHH
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RA--FGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~--~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+|+..+|.-|.++|......|.+++++... ..+...+ .. .|.+++.+..+.+..+.+..+.+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 65 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRS---RDRLAAAARALGGGAPVRTAALDITDEAAVDAFFA 65 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 366777889999999988899997776543 2222221 11 25666655544443455555544
No 487
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=37.49 E-value=86 Score=31.19 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=38.0
Q ss_pred CchhHHHHHHHHH----HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 132 RSVKDRIGYSMIT----DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 132 GSfK~Rga~~~~~----~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
|.+..=.|.+.+. .+...|....| ++|..-+.||-|..+|..++.+|++++++=|
T Consensus 89 g~na~aVAE~v~~~lL~l~r~~g~~l~g-ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp 147 (381)
T PRK00257 89 GCNARGVVDYVLGSLLTLAEREGVDLAE-RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDP 147 (381)
T ss_pred CcChHHHHHHHHHHHHHHhcccCCCcCc-CEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 4444444444333 23334433334 4588899999999999999999999998865
No 488
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=37.39 E-value=1.5e+02 Score=28.42 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=11.1
Q ss_pred CHHHHHHHHhcCCEEEEECCCCC
Q 019047 191 NLERRILLRAFGAEIILTDPEKG 213 (347)
Q Consensus 191 ~~~~~~~l~~~GA~V~~~~~~~~ 213 (347)
+..-+++++.-|.+|+.++..++
T Consensus 111 P~~vl~qLraagV~vv~v~~~~~ 133 (300)
T COG4558 111 PATVLDQLRAAGVPVVTVPEQPT 133 (300)
T ss_pred cHHHHHHHHHcCCcEEEcCCCCC
Confidence 34445555555555555544333
No 489
>PRK07574 formate dehydrogenase; Provisional
Probab=37.02 E-value=2.9e+02 Score=27.53 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=64.5
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
++|..-+.|+-|+++|..++.||++++.+=+...+. ...+.+|++ ... +++ ++.++- +...++-
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~---~~~~~~g~~--~~~---~l~-------ell~~a-DvV~l~l 256 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPE---EVEQELGLT--YHV---SFD-------SLVSVC-DVVTIHC 256 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCch---hhHhhcCce--ecC---CHH-------HHhhcC-CEEEEcC
Confidence 357888999999999999999999988775543222 222344532 111 122 223332 4554433
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHH--HHHHHHHh
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT--GTGRFLKM 284 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~--Gi~~~~k~ 284 (347)
-.++.. ...+..|.+.++ ++..+++-+|-|+.+- .+..+++.
T Consensus 257 Plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 257 PLHPET----EHLFDADVLSRM--KRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred CCCHHH----HHHhCHHHHhcC--CCCcEEEECCCCchhhHHHHHHHHHh
Confidence 223322 233567788887 5688999999998863 44455554
No 490
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.01 E-value=59 Score=32.15 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=27.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcC-------CcEEEEeCCC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKG-------YKLIVTMPAS 189 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~G-------l~~~I~vp~~ 189 (347)
+..|..-++|+||.|+|......| -++.++..+.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 345889999999999999998876 5788877653
No 491
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.91 E-value=1.7e+02 Score=26.63 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=36.0
Q ss_pred CeEEEEeC--CChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPT--TGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~as--sGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.+ ++--|.++|......|.++++.-.......+++.+ +.+|..+ .+..|....+.++.+.+..
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dv~d~~~v~~~~~~~ 78 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDL-VFPCDVASDEQIDALFASL 78 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcc-eeeccCCCHHHHHHHHHHH
Confidence 45566663 34678888888888999887653222223333333 3345432 2222222344455554433
No 492
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=36.73 E-value=1.1e+02 Score=29.51 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=37.0
Q ss_pred EEEeCCC-hhHHHHHHHHHHcCCcEEEEeCCCCC--HHHH----HHHHhcCCEEEEEC
Q 019047 159 LVEPTTG-NTGLGIAFVAAVKGYKLIVTMPASTN--LERR----ILLRAFGAEIILTD 209 (347)
Q Consensus 159 vv~assG-N~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~----~~l~~~GA~V~~~~ 209 (347)
|+..+.+ |.+++++.+++.+|++++++-|.... ...+ ...+..|+++..++
T Consensus 150 va~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 150 LAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred EEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 4555554 67799999999999999999998632 2222 23456799988776
No 493
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=36.58 E-value=2.5e+02 Score=23.93 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=21.4
Q ss_pred CeEEEEeCCChh---HHHHHHHHHHcCCcEEEEeCCC
Q 019047 156 KTVLVEPTTGNT---GLGIAFVAAVKGYKLIVTMPAS 189 (347)
Q Consensus 156 ~~~vv~assGN~---g~AlA~aa~~~Gl~~~I~vp~~ 189 (347)
..+++..++|.. +..+. .+...++++++++-.+
T Consensus 67 ~~vv~i~GDG~f~~~~~el~-ta~~~~lpv~ivv~NN 102 (172)
T cd02004 67 KRVVLVEGDGAFGFSGMELE-TAVRYNLPIVVVVGNN 102 (172)
T ss_pred CeEEEEEcchhhcCCHHHHH-HHHHcCCCEEEEEEEC
Confidence 456777777733 35554 4667899987766543
No 494
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=36.57 E-value=2.6e+02 Score=25.62 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhc---CCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHH
Q 019047 168 GLGIAFVAAVKGYKLIVTMPASTNLERRILLRAF---GAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLK 244 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~---GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~ 244 (347)
|-+.|.+.+.+|+++.++-++.........+..+ |.+|....+... ++.+ ...+....-....+.-|.+-..
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~-r~~l--~~~L~~~G~~v~~~~~Y~~~~~-- 160 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG-REVL--EEKLEERGAEVREVEVYRTEPP-- 160 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc-hHHH--HHHHHhCCCEEEEEeeeeecCC--
Confidence 4677888899999988765655666677777666 678877665432 1122 2223332213344455544322
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCC----CCeEEEEcCCCC
Q 019047 245 IHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK----EIKVVGVEPAER 299 (347)
Q Consensus 245 ~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~----~~~vigVep~~~ 299 (347)
.+. ...++........|+|+.. ++..+..+...+...+. +.+++++=|...
T Consensus 161 -~~~-~~~~~~~~~~~~~d~v~ft--S~~~v~~~~~~~~~~~~~~~~~~~v~~IG~~Ta 215 (248)
T COG1587 161 -PLD-EATLIELLKLGEVDAVVFT--SSSAVRALLALAPESGIEFLERKRVASIGPRTA 215 (248)
T ss_pred -Ccc-HHHHHHHHHhCCCCEEEEe--CHHHHHHHHHHccccchhHhhCceEEEecHHHH
Confidence 122 1111111112578988877 56677777777666553 367787776544
No 495
>PRK06953 short chain dehydrogenase; Provisional
Probab=36.34 E-value=2.8e+02 Score=24.33 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=36.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+.+++.++|.-|.++|..-...|.+++++... ..+...++..+.+.+..+
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D 52 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALD 52 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEec
Confidence 56788888999999999888889987776443 334445555677766555
No 496
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=36.14 E-value=1.5e+02 Score=30.03 Aligned_cols=51 Identities=27% Similarity=0.184 Sum_probs=39.3
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC--------------C----HHHHHHHHhcCCEEEE
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--------------N----LERRILLRAFGAEIIL 207 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~--------------~----~~~~~~l~~~GA~V~~ 207 (347)
..|+.-++|-.|.+.|...+..|.+++||-.... + ...++.++.+|.+++.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3589999999999999999999999998854321 1 1245667888988864
No 497
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=35.96 E-value=1.5e+02 Score=22.40 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=32.7
Q ss_pred EEeCCChhHHHHHHHHHHcC---CcEEEEeCCCCCHHHHHHH-HhcCCEEEEE
Q 019047 160 VEPTTGNTGLGIAFVAAVKG---YKLIVTMPASTNLERRILL-RAFGAEIILT 208 (347)
Q Consensus 160 v~assGN~g~AlA~aa~~~G---l~~~I~vp~~~~~~~~~~l-~~~GA~V~~~ 208 (347)
..-++||.|.+++......| .++.++.. .++.+.+.+ +.+|.++...
T Consensus 3 ~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~--r~~~~~~~~~~~~~~~~~~~ 53 (96)
T PF03807_consen 3 GIIGAGNMGSALARGLLASGIKPHEVIIVSS--RSPEKAAELAKEYGVQATAD 53 (96)
T ss_dssp EEESTSHHHHHHHHHHHHTTS-GGEEEEEEE--SSHHHHHHHHHHCTTEEESE
T ss_pred EEECCCHHHHHHHHHHHHCCCCceeEEeecc--CcHHHHHHHHHhhccccccC
Confidence 33489999999999999998 55554432 355555554 6778776653
No 498
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=35.96 E-value=4.2e+02 Score=25.77 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=42.4
Q ss_pred CCCchhHHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChhHHHHHHHHHH-c-CCcEEEEeCCCCCHHHHHHHHhcCCEE
Q 019047 130 PCRSVKDRIGYSMITDAEESGD--ITPGKTVLVEPTTGNTGLGIAFVAAV-K-GYKLIVTMPASTNLERRILLRAFGAEI 205 (347)
Q Consensus 130 ptGSfK~Rga~~~~~~a~~~G~--~~~g~~~vv~assGN~g~AlA~aa~~-~-Gl~~~I~vp~~~~~~~~~~l~~~GA~V 205 (347)
+.|.-+.|-+...-. ....|. +.+. ..|+.+.+++.+..++..+-. - |-.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~-~~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWL-ERRYGLPALDPA-TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHH-HHHhCCCcCCcc-ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 357777776655433 222343 2222 236666667777766655432 1 112334445422333355677899999
Q ss_pred EEECC
Q 019047 206 ILTDP 210 (347)
Q Consensus 206 ~~~~~ 210 (347)
+.++-
T Consensus 142 ~~vp~ 146 (396)
T PRK09147 142 YFLNC 146 (396)
T ss_pred EEecc
Confidence 98864
No 499
>PRK08263 short chain dehydrogenase; Provisional
Probab=35.83 E-value=2.6e+02 Score=25.48 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=39.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HhcCCEEEEECCCCChHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++.+|+..+|-.|.++|......|.++++.... ..+...+ ...+.+++.+..+.+..+.+..+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 68 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATARD---TATLADLAEKYGDRLLPLALDVTDRAAVFAAV 68 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHhccCCeeEEEccCCCHHHHHHHH
Confidence 467888889999999999998889886665432 2233322 334555555544333334444443
No 500
>PRK06847 hypothetical protein; Provisional
Probab=35.72 E-value=47 Score=32.00 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=27.2
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp 187 (347)
.|+..++|-.|.++|.+.+..|++++|+=.
T Consensus 6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 489999999999999999999999998843
Done!