RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019047
(347 letters)
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 468 bits (1206), Expect = e-165
Identities = 179/340 (52%), Positives = 238/340 (70%), Gaps = 18/340 (5%)
Query: 16 LLPPHPLNIASQKRHRFARFKTSSLSSINGALATRRRILPIVASAKAGAAASSSSSSLYA 75
LL P + +S RF S S + A + S G+ S
Sbjct: 43 LLNPLTSSSSSSTLRRFRCSPEISSLSFSSASDFSLAMKRQSRSFADGSERDPSVVCEAV 102
Query: 76 TSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVK 135
+ G+NIA++V+QLIG+TPMVYLN + +GCV N+AAKLE MEPC SVK
Sbjct: 103 KRETGPD--------GLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVK 154
Query: 136 DRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR 195
DRIGYSM+TDAE+ G I+PGK+VLVEPT+GNTG+G+AF+AA +GY+LI+TMPAS ++ERR
Sbjct: 155 DRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERR 214
Query: 196 ILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255
+LL+AFGAE++LTDP KG+ GA+ KAEEI+ NTP+AYM QQFDN AN KIH+++TGPEIW
Sbjct: 215 VLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIW 274
Query: 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN--------- 306
+DT G VDIFVA IGTGGTITG GRF+K N + +V+GVEP E ++SG
Sbjct: 275 DDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGI 334
Query: 307 -AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
AG++P LD +++DEVI ++++EA+ A++LAL+EGL+V
Sbjct: 335 GAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMV 374
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 455 bits (1174), Expect = e-162
Identities = 164/263 (62%), Positives = 213/263 (80%), Gaps = 10/263 (3%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SVKDRIG+SMI+DAE+ G I
Sbjct: 4 RIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLI 63
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP K
Sbjct: 64 KPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAK 123
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+ IGTG
Sbjct: 124 GMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTG 183
Query: 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEV 322
GTITG G++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV
Sbjct: 184 GTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEV 243
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
++V++DE+++MAR+LAL+EGLLV
Sbjct: 244 VQVSSDESIDMARQLALKEGLLV 266
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 451 bits (1162), Expect = e-160
Identities = 118/263 (44%), Positives = 168/263 (63%), Gaps = 11/263 (4%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
N+A+ + QLIG+TP +YLNK+ V K+E P SVKDR+G+++ AE+ G +
Sbjct: 10 NVAQSIDQLIGQTPALYLNKLN-NTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKL 68
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PGK+++VE ++GNTG+ +A + A++GYK+I+TMP S +LERR LLR FGAE+ILT
Sbjct: 69 IPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 128
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G++GA+ A++IV PNA + QF N IH ++TGPEIWE T VD F+A +GTG
Sbjct: 129 GMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 188
Query: 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEV 322
GT+TG R LK M ++V VEP E V+SG G+VP +LD L+DEV
Sbjct: 189 GTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEV 248
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
+ V D+A+ A +L +G+
Sbjct: 249 LCVAGDDAIETALKLTRSDGVFC 271
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 448 bits (1155), Expect = e-159
Identities = 134/266 (50%), Positives = 182/266 (68%), Gaps = 11/266 (4%)
Query: 90 HGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEES 149
++IAED+TQLIGRTP+V L +VT+G V ++ AKLE P SVKDRIG +M+ AE++
Sbjct: 2 SHMSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQA 61
Query: 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
G I P T+++EPT+GNTG+ +A V A +GY+ ++TMP + +LERR+LLRA+GAE+ILT
Sbjct: 62 GLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTP 120
Query: 210 PEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAI 269
G+ GA+ KAEE+ ++ QQF+N AN IH +T E+W DT G VDI VA +
Sbjct: 121 GADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGV 180
Query: 270 GTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLL 319
GTGGTITG + +K + V VEPA V+SG AG+VP +LD L+
Sbjct: 181 GTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLV 240
Query: 320 DEVIKVTNDEAVNMARRLALEEGLLV 345
DE+I V N++A+N+ARRLA EEGLLV
Sbjct: 241 DEIITVGNEDALNVARRLAREEGLLV 266
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 426 bits (1098), Expect = e-151
Identities = 122/271 (45%), Positives = 169/271 (62%), Gaps = 21/271 (7%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
I D + IG TP+V L G GNV K+E P SVK RIG +M+ AE+ G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
T GK +V+ T+GNTG+ +A+VAA +GYK+ +TMP + +LER+ LL G ++LT+ K
Sbjct: 60 TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 213 GLRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGT 271
G++GA+ KAEEIV + P+ Y M +QF+N AN +IH ++TGPEIW+DT G VD+ VA +GT
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 272 GGTITGTGRFLKM-MNKEIKVVGVEPAERSVISGEN----------------AGYVPSIL 314
GG+ITG R +K+ K+I V VEP E VIS AG++P L
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNL 238
Query: 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
D+ ++D V V +D A+ ARRL EEG+L
Sbjct: 239 DLSIIDRVETVDSDTALATARRLMAEEGILA 269
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 419 bits (1079), Expect = e-148
Identities = 122/259 (47%), Positives = 170/259 (65%), Gaps = 12/259 (4%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK- 156
V IG+TP+V L KV E + V KLE + P S+KDR + MI DAEE G + PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG 216
V+VEPT+GNTG+G+A +AA +GY+LI+TMPA + ER+ +L+AFGAE++LTDPE+ +
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 217 ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276
A ++A + A+M QF N AN++ H+++TGPE++E G +D FV GTGGTIT
Sbjct: 123 AREEALRLK-EELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 277 GTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVIKVT 326
G GR+LK +KV+ VEPA +V+SG G++P LD+ LLD VI+V
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 327 NDEAVNMARRLALEEGLLV 345
++A +ARRLA EEGL +
Sbjct: 242 EEDAFPLARRLAREEGLFL 260
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 412 bits (1062), Expect = e-145
Identities = 129/263 (49%), Positives = 168/263 (63%), Gaps = 12/263 (4%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
+T+LIG TP V LN++ + +V KLE M P SVKDRI +MI AE++G +
Sbjct: 3 RTVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKL 62
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PG T +VEPT+GNTG+G+A VAA KGYK ++ MP + +LERR LLRA+GAE++LT +
Sbjct: 63 KPGDT-IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQ 121
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G+RGA+ KAEE+V +M QQF N AN +IH +TG EI E +D FVA +GTG
Sbjct: 122 GMRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTG 180
Query: 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEV 322
GTITG G+ L+ IK+ VEPA+ V+SG AG+VP ILD + D V
Sbjct: 181 GTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGV 240
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
I VT +EA ARR A EEG+L
Sbjct: 241 ITVTTEEAFAAARRAAREEGILG 263
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 409 bits (1053), Expect = e-144
Identities = 98/268 (36%), Positives = 158/268 (58%), Gaps = 17/268 (6%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCV----GNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
I ++ + IG TP+V L+ VTE + KLE P SVKDR+G++++ A +
Sbjct: 12 RIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIK 71
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G + PG ++E T+GNTG+ + AV GY++ + MP++ ++ER+++++AFGAE+ILT
Sbjct: 72 DGRLKPGME-IIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILT 130
Query: 209 DPEKGLRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
+ +KG+ GA+++ +++ P Y + QF N N H T EIWEDT G VDI V+
Sbjct: 131 EGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVVS 189
Query: 268 AIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQ 317
A+GT GT+ G LK K IK++ VEP E +V+ G+ AG++P I +
Sbjct: 190 AVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKE 249
Query: 318 LLDEVIKVTNDEAVNMARRLALEEGLLV 345
+DE+I + +A MAR + +G++
Sbjct: 250 FVDEIIPIKTQDAWKMARAVVKYDGIMC 277
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 397 bits (1022), Expect = e-139
Identities = 104/252 (41%), Positives = 152/252 (60%), Gaps = 5/252 (1%)
Query: 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK 156
+ Q IG TP+V L ++ V KLE P SVKDR SMI +AE+ G+I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
Query: 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG 216
L+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ G
Sbjct: 63 V-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 217 ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276
A D A E+ + QF+N N H+ +TGPEIW+ T G + FV+++GT GTIT
Sbjct: 122 ARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 277 GTGRFLKMMNKEIKVVGVEPAERSVISGEN---AGYVPSILDVQLLDEVIKVTNDEAVNM 333
G RF++ +K + +VG++P E S I G Y+P I + L+DEV+ + +A N
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENT 240
Query: 334 ARRLALEEGLLV 345
R LA+ EG+
Sbjct: 241 MRELAVREGIFC 252
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 395 bits (1017), Expect = e-139
Identities = 115/264 (43%), Positives = 162/264 (61%), Gaps = 19/264 (7%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
+ + +LIG TP+V L+ + + KLE P SVKDR MI DAE+ G +
Sbjct: 9 HHHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLL 64
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
G +VEPT+GN G+ IA + A +G+++I+TMP + ++ERR +L+ GAE++LT E
Sbjct: 65 KNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGEL 121
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G++GA++KA EI A+M QF+N N+ H +TGPEI + +D FVA +GTG
Sbjct: 122 GMKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTG 180
Query: 273 GTITGTGRFLK-MMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDE 321
GTI+G GR LK +K+V VEPA+ V+SG AG+VP ILD ++DE
Sbjct: 181 GTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDE 240
Query: 322 VIKVTNDEAVNMARRLALEEGLLV 345
VI V ++EA MAR LA +EGLLV
Sbjct: 241 VITVEDEEAYEMARYLAKKEGLLV 264
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 385 bits (991), Expect = e-134
Identities = 96/264 (36%), Positives = 142/264 (53%), Gaps = 12/264 (4%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVT-------EGCVGNVAAKLESMEPCRSVKDRIGYSMIT 144
+ + + Q +G TP+V L +++ +G + AKLE P S+KDR MI
Sbjct: 3 MTRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIE 62
Query: 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204
AE G + PG T ++EPT+GNTG+ +A A +KGY+LI MP +T++ERR LL +GA+
Sbjct: 63 QAEADGLLRPGAT-ILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQ 121
Query: 205 IILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI 264
II + E G A+ A+E+ P+ M Q+ N AN H+ TGPE+ D +
Sbjct: 122 IIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITH 180
Query: 265 FVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSV---ISGENAGYVPSILDVQLLDE 321
FVA +GT GT+ GTGRFL+ +K+V EP + + G+VP + D ++L
Sbjct: 181 FVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVYALRNMDEGFVPELYDPEILTA 240
Query: 322 VIKVTNDEAVNMARRLALEEGLLV 345
V +AV R L EG+
Sbjct: 241 RYSVGAVDAVRRTRELVHTEGIFA 264
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 356 bits (916), Expect = e-122
Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 13/260 (5%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC-RSVKDRIGYSMITDAEESGD 151
D + TP+V V V KLE P SVKDR +I+
Sbjct: 85 PSPLDFFERGKPTPLVRSRLQLPNGV-RVWLKLEWYNPFSLSVKDRPAVEIISRLSR--R 141
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
+ G + + T+ N G+ ++ VA + GY+ V +P + ++L R GA++I+
Sbjct: 142 VEKGSL-VADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEA 200
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGC---VDIFVAA 268
L + + QF N AN + H T EI+ + + +
Sbjct: 201 PSTVHLLPRVMKDS-KNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGS 259
Query: 269 IGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKV 325
+GT G ++ +L+ ++ I+ V V+PA+ I G G + I + + + +V
Sbjct: 260 LGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLW-INMLDISYTLAEV 318
Query: 326 TNDEAVNMARRLALEEGLLV 345
T +EA+ +A +GL++
Sbjct: 319 TLEEAMEAVVEVARSDGLVI 338
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 352 bits (905), Expect = e-120
Identities = 100/273 (36%), Positives = 149/273 (54%), Gaps = 21/273 (7%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
I D+ + IG TPMV +NK+ + G + AK E SVKDRI MI DAE G
Sbjct: 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 156
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD- 209
+ PG T ++EPT+GNTG+G+A AAV+GY+ I+ MP + E+ +LRA GAEI+ T
Sbjct: 157 TLKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215
Query: 210 --PEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
+ A + PN+++ Q+ N +N H+D+T EI + G +D+ VA
Sbjct: 216 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 275
Query: 268 AIGTGGTITGTGRFLKMMNKEIKVVGVEP-----AERSVISGEN----------AGYVPS 312
++GTGGTITG R LK +++GV+P AE ++ ++P+
Sbjct: 276 SVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 335
Query: 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+LD ++D+ K ++EA AR L +EGLL
Sbjct: 336 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLC 368
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 353 bits (908), Expect = e-119
Identities = 100/273 (36%), Positives = 149/273 (54%), Gaps = 21/273 (7%)
Query: 93 NIAEDVTQLIGRTPMVYLNKV--TEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
I ++ ++IG TP+V LN + ++G + AK E + P SVKDRIGY M+ DAEE G
Sbjct: 49 QITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQG 108
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
+ PG T ++EPT+GNTG+G+A AVKGYK I+ MP + E+ LR GA+II T
Sbjct: 109 LLKPGYT-IIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167
Query: 211 EKGL---RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
E G + A+++ TPN+ + Q+ N N H+D T EI VD+ V
Sbjct: 168 EAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVV 227
Query: 268 AIGTGGTITGTGRFLKMMNKEIKVVGVEP-----AERSVISGEN----------AGYVPS 312
+ GT GTI+G GR +K ++VGV+P A + ++ + + P+
Sbjct: 228 SAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPT 287
Query: 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ D ++D K+ + + M+RRL EEGLL
Sbjct: 288 VFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLC 320
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 82.7 bits (205), Expect = 7e-18
Identities = 53/295 (17%), Positives = 102/295 (34%), Gaps = 63/295 (21%)
Query: 90 HGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDR-IGYSMITDAEE 148
G L +TP+ +++ +V K++S +P S K R IG+ A++
Sbjct: 32 RGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ 91
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G V + GN G+ A+ A G + +P +T L+ GA +
Sbjct: 92 ------GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVV 145
Query: 209 DPEKGLRG-----ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPE 253
G A + A+ + N P +++ I FD S E
Sbjct: 146 -------GELLDEAFELAKALAKNNPG-WVY----------IPPFDDPLIWEGHASIVKE 187
Query: 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK-EIKVVGVEPAE-----RSVISGE-- 305
+ E ++G GG + G + L+ ++ V+ +E + +G+
Sbjct: 188 LKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLV 247
Query: 306 NAGYVPSILD---------------VQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ + S+ + +++ EAV + +E +LV
Sbjct: 248 SLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILV 302
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 80.3 bits (199), Expect = 3e-17
Identities = 54/284 (19%), Positives = 100/284 (35%), Gaps = 64/284 (22%)
Query: 101 LIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDR-IGYSMITDAEESGDITPGKTVL 159
TP++ +++ V K E+++P S K R IG+ A++ G L
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKK------GCRHL 57
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG--- 216
V + GN G+ A+ A G + +P ST+L+ L+ GAE+ LT G
Sbjct: 58 VCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLT-------GKVW 110
Query: 217 --ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLG-CVD 263
A +A+E+ + FD S E+
Sbjct: 111 DEANLRAQELAKRDGWEN------------VPPFDHPLIWKGHASLVQELKAVLRTPPGA 158
Query: 264 IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE--NAGYVPSILD- 315
+ +A G G L++ + + ++ +E ++ +G+ + S+
Sbjct: 159 LVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKS 218
Query: 316 --V------------QLLDEVIKVTNDEAVNMARRLALEEGLLV 345
V + EAV+ ++L +E +LV
Sbjct: 219 LGAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLV 262
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 75.2 bits (185), Expect = 3e-15
Identities = 51/288 (17%), Positives = 89/288 (30%), Gaps = 59/288 (20%)
Query: 104 RTPMVYLNKVTEGC-VGNVAAKLESM--------------EPCRSVKDRIGYSM-ITDAE 147
TP+ L+ + V + K ES + + ++ + E
Sbjct: 44 PTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFE 103
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
+ K T GN G G+A+ A G ++ MP + ER + GAE I+
Sbjct: 104 HLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIV 163
Query: 208 TDP--EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFD------STGPEIWEDT- 258
TD + +R + A++ + Q KI + E E
Sbjct: 164 TDMNYDDTVRLTMQHAQQ-----HGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMR 218
Query: 259 ---LGCVDIFVAAIGTGGTITGTGRFLK--MMNKEIKVVGVEPAE-----RSVISGE--- 305
+ + + A G G +L + + + VEP + RS + G+
Sbjct: 219 EMGVTPTHVLLQAGV-GAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVN 277
Query: 306 NAGYVPSI---LDV------------QLLDEVIKVTNDEAVNMARRLA 338
G + +I L + I + A R L
Sbjct: 278 VGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLG 325
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 74.6 bits (184), Expect = 3e-15
Identities = 52/272 (19%), Positives = 98/272 (36%), Gaps = 42/272 (15%)
Query: 103 GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEP 162
G TP++ +++ + K+E + P S KDR +TDA G+ ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAH-----GQRAVLCA 91
Query: 163 TTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRG-ALDK 220
+TGNT A AA G V +P + + GA+II D G L+
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID---GNFDDCLEL 148
Query: 221 AEEIVLNTPNAYMFQQFDNMANL---KIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITG 277
A ++ + P N + K + EI + D+ +G G IT
Sbjct: 149 ARKMAADFPTIS-LVNSVNPVRIEGQK----TAAFEIVDVLGTAPDVHALPVGNAGNITA 203
Query: 278 TGR-FLKMMNKEI-----KVVGVEPA-------------ERSVISGENAGYVPSILD-VQ 317
+ + + + +++G + A ++ + G S V+
Sbjct: 204 YWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSPASWTSAVE 263
Query: 318 LLDE----VIKVTNDEAVNMARRLALEEGLLV 345
+ + +++E + +A EG+ V
Sbjct: 264 AQQQSKGRFLAASDEEILAAYHLVARVEGVFV 295
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 74.2 bits (183), Expect = 4e-15
Identities = 53/271 (19%), Positives = 99/271 (36%), Gaps = 39/271 (14%)
Query: 103 GRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
G TP++ + + G G + K E + P S KDR I+ A E+G K ++
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAG-----KRAVI 83
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALD 219
+TGNT A AA G + V +P + + +GA+++ G D
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ------GTFD 137
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDST-GPEIWEDTLGCVDIFVAAIGTGGTITGT 278
A IV + + +++ +I T EI + D +G G IT
Sbjct: 138 DALNIVRKIGENFPVEIVNSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAY 197
Query: 279 GR-FLKMMNKEI-----KVVGVEPA-------------ERSVISGENAGYVPSILD-VQL 318
+ F + +++G + +++ + G S ++
Sbjct: 198 WKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWKSALKA 257
Query: 319 LDE----VIKVTNDEAVNMARRLALEEGLLV 345
E + V++ E + + +A EG+
Sbjct: 258 AQESGGKIDAVSDSEILYAYKLIASTEGVFC 288
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 73.7 bits (182), Expect = 6e-15
Identities = 54/284 (19%), Positives = 106/284 (37%), Gaps = 49/284 (17%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154
++ I TP++ + + + N+ K E + S K R + +
Sbjct: 16 HINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERK 75
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGL 214
K V V ++GN G + + A ++G + +P + +++ ++A+GA I+ +P
Sbjct: 76 PKAV-VTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--SD 132
Query: 215 RGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLGCVDI 264
+ A+ + T + +H + E+ + VD
Sbjct: 133 ESRENVAKRVTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQ-VPLVDA 179
Query: 265 FVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE---NAGYVPSILD- 315
V +G GG + G +K + +KV EP+ +S + G+ N +I D
Sbjct: 180 LVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADG 239
Query: 316 -------------VQLLDEVIKVTNDEAVNMARRLALEEGLLVM 346
L+D++ VT DE A +L E L++
Sbjct: 240 VKSSIGLNTWPIIRDLVDDIFTVTEDEIKC-ATQLVWERMKLLI 282
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 72.9 bits (180), Expect = 1e-14
Identities = 50/288 (17%), Positives = 108/288 (37%), Gaps = 60/288 (20%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESG 150
+E + + +TP++ + V + V V K E+ + + K R + + +A+ ++G
Sbjct: 17 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAG 76
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
+T ++GN IA A + G + MP + + +G ++I+ D
Sbjct: 77 VLTF--------SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR 128
Query: 211 EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLG 260
A+EI I +D + E++E+ +G
Sbjct: 129 --YKDDREKMAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEE-VG 173
Query: 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE--NAGYVPSI 313
+D +G GG ++G+ + +V GVEP +S G + +I
Sbjct: 174 PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTI 233
Query: 314 LD---------------VQLLDEVIKVTNDEAVNMARRLALEEGLLVM 346
D + +D+++ V+++E ++ + +V+
Sbjct: 234 ADGAQTQHLGNYTFSIIKEKVDDILTVSDEELID-CLKFYAARMKIVV 280
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 70.0 bits (172), Expect = 1e-13
Identities = 60/279 (21%), Positives = 100/279 (35%), Gaps = 55/279 (19%)
Query: 103 GRTPMVYLN--KVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
G TP++ L + + AK E + P S KDR ++ A E G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGG-----AQAVA 81
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRG-AL 218
+TGNT A AA G IV +PA L + GA I+ + G AL
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE---GNFDDAL 138
Query: 219 DKAEEIV-------LNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCV-DIFVAAIG 270
+++ +N+ N + + +A F E+ ++ LG +G
Sbjct: 139 RLTQKLTEAFPVALVNSVNPHRLEGQKTLA-----F-----EVVDE-LGDAPHYHALPVG 187
Query: 271 TGGTITGTGR-FLKMMNKEI-----KVVGVEPA-------------ERSVISGENAGYVP 311
G IT + +++G + A ++ + G
Sbjct: 188 NAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPA 247
Query: 312 SILD-VQLLDE----VIKVTNDEAVNMARRLALEEGLLV 345
S V+ +E + VT++E + R LA EEG+
Sbjct: 248 SWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFC 286
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 69.1 bits (170), Expect = 2e-13
Identities = 57/289 (19%), Positives = 99/289 (34%), Gaps = 60/289 (20%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE-ESGDIT 153
+ RTP++ + + K E ++ S K R S E G +
Sbjct: 11 FRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENPKGLLA 70
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
++GN G+A+ A V G K +V MP + ++ RA+GAE++
Sbjct: 71 V--------SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--T 120
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDT---LG 260
+ + A + T Y IH FD + G E+
Sbjct: 121 AKNREEVARALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQAGRMGV 168
Query: 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE---NAGYVPS 312
+A +G GG + G +K ++ V+GVEP RS+ +G +
Sbjct: 169 FPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRT 228
Query: 313 ILD---------------VQLLDEVIKVTNDEAVNMARRLALEEGLLVM 346
D + +D ++ V+ + + A RL V+
Sbjct: 229 RADGVRTLSLGERTFPILRERVDGILTVSEEALLE-AERLLFTRTKQVV 276
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 69.8 bits (171), Expect = 2e-13
Identities = 41/263 (15%), Positives = 78/263 (29%), Gaps = 45/263 (17%)
Query: 120 NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKG 179
V A E + + + E ++ V +TGN GL I ++A G
Sbjct: 125 EVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAV-GSTGNLGLSIGIMSARIG 183
Query: 180 YKLIVTMPASTNLERRILLRAFGAEIILTDP--EKGLRGALDKAEEIVLNTPNAYMFQQF 237
+K+ V M A ++ LR+ G ++ + + A+ PN +
Sbjct: 184 FKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQS----DPNCFFIDDE 239
Query: 238 DN---------MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE 288
++ ++ D + +++ GG
Sbjct: 240 NSRTLFLGYSVAG-QRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDH 298
Query: 289 IKVVGVEPAE-----RSVISGEN--------AGYVPSI---LDV------------QLLD 320
+ EP V +G + + L V +LLD
Sbjct: 299 VHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLD 358
Query: 321 EVIKVTNDEAVNMARRLALEEGL 343
+++ +M LA EEG+
Sbjct: 359 GFYTLSDQTMYDMLGWLAQEEGI 381
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 68.0 bits (167), Expect = 5e-13
Identities = 66/271 (24%), Positives = 104/271 (38%), Gaps = 59/271 (21%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESG 150
+ + I +T M N +E C G + K E+M+ S K R ++ + T+AE G
Sbjct: 31 KKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKG 90
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
+ + GN G++ A+ G V MP + + AE++L
Sbjct: 91 VVAC--------SAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHG- 141
Query: 211 EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLG 260
+ K EIV +F I +D + G EI ED L
Sbjct: 142 -DNFNDTIAKVSEIVETE--GRIF----------IPPYDDPKVIAGQGTIGLEIMED-LY 187
Query: 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE--NAGYVPSI 313
VD + IG GG I G +K +N IKV+GV+ S +GE ++
Sbjct: 188 DVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTL 247
Query: 314 LD---V------------QLLDEVIKVTNDE 329
D V +L+D+++ V+ DE
Sbjct: 248 ADGCDVSRPGNLTYEIVRELVDDIVLVSEDE 278
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 66.9 bits (164), Expect = 1e-12
Identities = 60/273 (21%), Positives = 95/273 (34%), Gaps = 69/273 (25%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESGDIT 153
V + +P+ K+++ N K E + S K R Y+M+ + E + G IT
Sbjct: 54 VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT 113
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
+ GN G+A + MP +T + +RA G +++L
Sbjct: 114 A--------SAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLY----- 160
Query: 214 LRG-----ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDT 258
G A A E+ + D + I FD + G EI
Sbjct: 161 --GKTFDEAQTHALEL----------SEKDGLKY--IPPFDDPGVIKGQGTIGTEINRQ- 205
Query: 259 LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGENA--GYVP 311
L + +G GG I G F K + K++GVEP S+ G V
Sbjct: 206 LKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVD 265
Query: 312 SILD---V------------QLLDEVIKVTNDE 329
+ D V +L+D ++ V ND
Sbjct: 266 TFADGVAVALVGEYTFAKCQELIDGMVLVANDG 298
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 66.9 bits (164), Expect = 2e-12
Identities = 60/273 (21%), Positives = 102/273 (37%), Gaps = 69/273 (25%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESGDIT 153
V + TP+ + K++ + K E +P S K R Y+M+ T+ + G IT
Sbjct: 25 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT 84
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
+ GN G+AF +A G K ++ MP +T + +R FG E++L
Sbjct: 85 A--------SAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLH----- 131
Query: 214 LRG-----ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDT 258
G A KA E+ Q + FD + E+ +
Sbjct: 132 --GANFDEAKAKAIEL----------SQQQGFTW--VPPFDHPMVIAGQGTLALELLQQ- 176
Query: 259 LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE--NAGYVP 311
+D +G GG G +K + +IKV+ VE + ++ +G + V
Sbjct: 177 DAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVG 236
Query: 312 SILD---V------------QLLDEVIKVTNDE 329
+ V + LD++I V +D
Sbjct: 237 LFAEGVAVKRIGDETFRLCQEYLDDIITVDSDA 269
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 65.6 bits (160), Expect = 6e-12
Identities = 48/288 (16%), Positives = 93/288 (32%), Gaps = 60/288 (20%)
Query: 103 GRTPMVYLNKVTEGCVG--NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
G + + + + + +G ++ K + S KD +++ + +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAFGAEIILTDPEKGLR-GAL 218
+TG+T ++ A G IV +PA+ +++ A GA ++ D G +
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSID---TDFDGCM 245
Query: 219 DKAEEIV-------LNTPNAYMFQ-QFDNMANLKIHFDSTGPEIWEDTLGCV-DIFVAAI 269
EI N+ N+ + Q K + EI + V D +
Sbjct: 246 KLIREITAELPIYLANSLNSLRLEGQ-------K----TAAIEILQQFDWQVPDWVIVPG 294
Query: 270 GTGGTITGTGR-FLKMMNKEI-----KVVGVEPA---------------------ERSVI 302
G G I + F + ++V + A +
Sbjct: 295 GNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFA 354
Query: 303 SGENAGYVPSILD-VQLLDE----VIKVTNDEAVNMARRLALEEGLLV 345
S G SI V L + V + T +E ++ A A G+ +
Sbjct: 355 SAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMD-AMAQADSTGMFI 401
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 5e-06
Identities = 74/417 (17%), Positives = 117/417 (28%), Gaps = 125/417 (29%)
Query: 2 ALSSLQLQL-QLQLQLLPPHPLNI-ASQKRHRFARFKTSSLSSINGALATRRRILPIVAS 59
+ L L L+ LL P ASQ + +F + ILP
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK------------------ILPEPTE 46
Query: 60 AKAGAAASSSSSSLYAT----STREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTE 115
A ++ + L + +E + F V YL
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV--LNLCLTEFENC---YLE---- 97
Query: 116 GCVGN----VAAKLESMEPCRSVKD----RIGYSMITDAEESGDITPGKTVLVEPTTGNT 167
GN +AAKL VK + + A+ D + GN
Sbjct: 98 ---GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 168 GLGIAFVAAVKG------------------YKLIVT---MPASTNLERRILLR-AFGAEI 205
L F G Y ++V ++ L L+R AE
Sbjct: 155 QLVAIF-----GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE--LIRTTLDAEK 207
Query: 206 ILT---DPEKGLRGALDKAEEIVLNT-----PNAYMFQQFDNMANLKIHFDSTG--PEIW 255
+ T + + L + ++ L + P + Q +A+ + G P
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ----LAHYVVTAKLLGFTPGEL 263
Query: 256 ED----TLGCV-DIFVA-AIGTGGTITGTGRFLKMMNKEIKV---VGVE----------P 296
G + A AI + F + K I V +GV P
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWES---FFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 297 AERSVISGENAGYVPS-ILDV-----QLLDEVIKVTNDEA----------VNMARRL 337
S EN VPS +L + + + + + TN VN A+ L
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Score = 38.9 bits (90), Expect = 0.003
Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 78/209 (37%)
Query: 2 ALSSLQLQLQLQLQLLPPHPLNIA----SQKR----HRF----ARFKTSSLSSINGALAT 49
+L L L L+ + P L+ + S+++ +RF + F + L A+
Sbjct: 385 SLYGLNLTLR---KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP-----AS 436
Query: 50 RRRILPIVASAKAGAAASSSSSSL----YATSTREIEKEEGNDF--HGVNIAEDVTQLIG 103
++ S ++ + Y T G+D +I+E + I
Sbjct: 437 -----DLINKDLVKNNVSFNAKDIQIPVYDTFD-------GSDLRVLSGSISERIVDCII 484
Query: 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT----VL 159
R P V T + + I D G PG VL
Sbjct: 485 RLP-VKWETTT----------------------QFKATHILDF---G---PGGASGLGVL 515
Query: 160 VEPTTGNTGLGIAFVAAVK-------GYK 181
TG+ + + G+K
Sbjct: 516 THRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 36.6 bits (84), Expect = 0.015
Identities = 51/285 (17%), Positives = 85/285 (29%), Gaps = 96/285 (33%)
Query: 70 SSSLYATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGN--VAAKLES 127
S+ ++ T K E F +N E T R+ L+ T+ A L
Sbjct: 1689 SAMIFETIVDGKLKTE-KIFKEIN--EHSTSYTFRSEKGLLSA-TQ----FTQPA--LTL 1738
Query: 128 MEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTG--LG----IAFVAAVKGYK 181
ME + D + G I T G LG +A +A V
Sbjct: 1739 ME----------KAAFEDLKSKGLIPADATFA--------GHSLGEYAALASLADV---- 1776
Query: 182 LIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMA 241
M + +E ++ RG + V N
Sbjct: 1777 ----MSIESLVE---VVF--------------YRGMT--MQVAVPRDELGR-----SNYG 1808
Query: 242 NLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGV---EPAE 298
+ I+ ++ L V +G TG + EI V +
Sbjct: 1809 MIAINPGRVAASFSQEAL---QYVVERVGKR-----TGWLV-----EI----VNYNVENQ 1851
Query: 299 RSVISGENAGYVPSILD--VQLLDEVIKVTNDEAVNMARRLALEE 341
+ V +G+ LD +L+ IK+ + + + + L+LEE
Sbjct: 1852 QYVAAGDLRA-----LDTVTNVLNF-IKLQKIDIIELQKSLSLEE 1890
Score = 36.2 bits (83), Expect = 0.020
Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 69/210 (32%)
Query: 194 RRILLRA-------FG---AEIILTDP-EKGLRGALDKAEEIVLNTPNAYMFQQFDNMAN 242
+ + RA +G +I++ +P + +K + I N Y F+ + +
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN----YSAMIFETIVD 1698
Query: 243 LKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFL--------KMMNKEIKVVGV 294
K+ + EI E + F G ++ T +F K +++K G+
Sbjct: 1699 GKLKTEKIFKEINEHSTSY--TFR---SEKGLLSAT-QFTQPALTLMEKAAFEDLKSKGL 1752
Query: 295 EPAERSVI--S-GEN------AGYVPSILD-VQLL-------------DE---------- 321
PA+ + S GE A + SI V+++ DE
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVM-SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 322 -----VIKVTNDEAV-NMARRLALEEGLLV 345
V + EA+ + R+ G LV
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLV 1841
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 7e-06
Identities = 47/389 (12%), Positives = 110/389 (28%), Gaps = 129/389 (33%)
Query: 15 QLLPPHPLNIASQKRHRFARFKTSSLSSINGALATRRRILPIVASAKAGAAASSSSSSLY 74
Q+ + ++ R + + AL R ++ G S + +
Sbjct: 124 QVFAKYNVS----------RLQP--YLKLRQALLELRPAKNVLIDGVLG----SGKTWVA 167
Query: 75 ATSTREIEKEEGNDFHG--VNIAEDVTQLIGRTPMVYLNKVTEGCV---GNVAAKLESME 129
+ + DF +N+ +P L + + N ++ +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNC------NSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 130 PCR----SVKDRIGYSM--------------ITDAE--ESGDITPGKTVLVEPTTGNTGL 169
+ S++ + + + +A+ + ++ +L+ TT
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL--SCKILL--TTRFKQ- 276
Query: 170 GIAFVAAVKGYKLIVTMPASTNLERR----ILLRAFG-------AEIILTDPEK-GLRGA 217
+ + I S L +LL+ E++ T+P + +
Sbjct: 277 -VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 218 L----------------DKAEEIV---LNTPNAYMFQQ-FDNMA----NLKIHFDSTGPE 253
DK I+ LN +++ FD ++ + I P
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI------PT 389
Query: 254 -----IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAG 308
IW D ++ ++ VV + + S++ +
Sbjct: 390 ILLSLIWFD--------------------------VIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 309 YVPSILDVQLLDEVIKVTNDEAVNMARRL 337
SI + L +KV + + R +
Sbjct: 424 STISIPSIYLE---LKVKLENEYALHRSI 449
Score = 37.1 bits (85), Expect = 0.008
Identities = 46/381 (12%), Positives = 99/381 (25%), Gaps = 133/381 (34%)
Query: 19 PHPLN--------IASQKRHRFARFKTSSLSSINGALATRRRILPIVASAKAGAAASSSS 70
++ + S++ +F L L + + S
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR---------QPSMM 108
Query: 71 SSLYATSTREIEKEEGNDF--HGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESM 128
+ +Y R+ + F + V+ + +L R L +
Sbjct: 109 TRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQ------------------ALLEL 147
Query: 129 EPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP- 187
P ++V + ++ G GKT + + YK+ M
Sbjct: 148 RPAKNV---LIDGVL------G---SGKTWVA-------------LDVCLSYKVQCKMDF 182
Query: 188 -------ASTNLERRIL--LRAFGAEI-----ILTDPEKGLRGALDKAEEIVLNT----- 228
+ N +L L+ +I +D ++ + + +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 229 -PNAYMFQQFDNMANLKI--HFDSTGPEIWEDTLGC---V---DIFVAAIGTGGTIT--- 276
N + N+ N K F+ L C + V + T T
Sbjct: 243 YENCLLV--LLNVQNAKAWNAFN----------LSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 277 ---GTGRFLKMMNKEI--KVVGVEPAE--RSVISGENAGYVPSILDVQLLDEVIKV---- 325
+ K + K + P + R V++ P + ++ E I+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-----P--RRLSIIAESIRDGLAT 343
Query: 326 ------TNDEAVNMARRLALE 340
N + + +L
Sbjct: 344 WDNWKHVNCDKLTTIIESSLN 364
Score = 34.1 bits (77), Expect = 0.088
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 48/167 (28%)
Query: 196 ILLRAFGAEIILTDPEKGLRGALDKAE-EIVLNTPNA-----YMFQQFDNMANLKIHFDS 249
+ AF D + + L K E + ++ + +A +F S
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF----------WTLLS 73
Query: 250 TGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA--------ERSV 301
E+ V FV + +FL M+ IK +P+ +R
Sbjct: 74 KQEEM-------VQKFV-----EEVLRINYKFL--MSP-IKTEQRQPSMMTRMYIEQRDR 118
Query: 302 ISGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV--M 346
+ +N + +V L +K+ L + +L+ +
Sbjct: 119 LYNDNQVFAK--YNVSRLQPYLKLR-----QALLELRPAKNVLIDGV 158
Score = 32.5 bits (73), Expect = 0.24
Identities = 15/92 (16%), Positives = 23/92 (25%), Gaps = 30/92 (32%)
Query: 246 HFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE 305
H D E E DI F V+ +S++S E
Sbjct: 6 HMDF---ETGEHQYQYKDILSV-------------FEDAFVDNFDCKDVQDMPKSILSKE 49
Query: 306 NAGYVPSILDVQLLDEVIKVTNDEAVNMARRL 337
+D +I + + RL
Sbjct: 50 E------------IDHIIMSKDAV--SGTLRL 67
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase;
HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1
PDB: 1j0b_A*
Length = 325
Score = 41.9 bits (98), Expect = 1e-04
Identities = 37/197 (18%), Positives = 70/197 (35%), Gaps = 17/197 (8%)
Query: 165 GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKG---LRGALDK 220
N A G I+ + L+ LL + G E + D + ++ A +
Sbjct: 81 SNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEI 140
Query: 221 AEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGR 280
AEE+ Y+ + + EI + D V A G+GGT+ G
Sbjct: 141 AEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSL 200
Query: 281 FLKMMNKEIKVVGV------EPAERSVISGENAGYVPSILDVQLLDEVIK-------VTN 327
L ++N++I+ VG+ E + + + V++ E+
Sbjct: 201 GLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKIT 260
Query: 328 DEAVNMARRLALEEGLL 344
E + R++ EG++
Sbjct: 261 GEVAQIIRKVGTREGII 277
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 36.8 bits (85), Expect = 0.009
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 17/110 (15%)
Query: 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENA----- 307
+ D V TG T G + +V+GV+ + + + E
Sbjct: 181 AQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIAR 240
Query: 308 --------GYVPSILDVQLLDEVIK----VTNDEAVNMARRLALEEGLLV 345
DV L + + N+ + R A EG+L
Sbjct: 241 QTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLT 290
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 34.9 bits (81), Expect = 0.027
Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 54/165 (32%)
Query: 150 GDITPGKTVLVEPTTGNTGLG-IAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
+ G TVLV G G I V+ + +A+GA ++ T
Sbjct: 164 AGVQLGTTVLV------IGAGPIGLVSV-------------------LAAKAYGAFVVCT 198
Query: 209 DPEKGLRGALDKAEE------IVLNTPNAYMFQQFDNMANLK-----IHFDSTGPEIWED 257
L+ A+ +V++ + + + + D +G E
Sbjct: 199 ARSP---RRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEK--- 252
Query: 258 TLGCVDIFVAAIGTGGTIT--GTGR------FLKMMNKEIKVVGV 294
C+ I + TGGT+ G G + +EI + V
Sbjct: 253 ---CITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSV 294
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 34.5 bits (80), Expect = 0.043
Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 47/166 (28%)
Query: 146 AEESGDITPGKTVLVEPTTGNTGLG-IAFVAAVKGYKLIVTMPASTNLERRILLRAFGA- 203
+ + G VL+ G G I + + +A GA
Sbjct: 171 GLQRAGVRLGDPVLI------CGAGPIGLITM-------------------LCAKAAGAC 205
Query: 204 EIILTDPEKGLRGALDKAEEI----VLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTL 259
+++TD ++ G L A+EI V + + ++ + F P + +
Sbjct: 206 PLVITDIDE---GRLKFAKEICPEVVTHKVERLSAE--ESAKKIVESFGGIEPAVALECT 260
Query: 260 G---CVDIFVAAIGTGGTIT--GTGR------FLKMMNKEIKVVGV 294
G + + A+ GG + G G+ F++ +E+ +
Sbjct: 261 GVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQ 306
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 34.0 bits (78), Expect = 0.063
Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 15/167 (8%)
Query: 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV--AAVKGYKLIVTMPASTNLERRIL 197
Y M+ + + G VL+ +G GLG + G + ++ ++
Sbjct: 207 YRMLVS-DRGAQMKQGDIVLIWGASG--GLGSYAIQFVKNGGGIPVAV---VSSAQKEAA 260
Query: 198 LRAFGAEIILTDPEKGLRGAL-DKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256
+RA G ++++ E G+ + D +V I F+ TG +
Sbjct: 261 VRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFG 320
Query: 257 DTLGCVD----IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAER 299
++ + +G T R+L M K K+VG A
Sbjct: 321 LSVIVARRGGTVVTCGSSSGYLHTFDNRYLWM--KLKKIVGSHGANH 365
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 33.0 bits (76), Expect = 0.13
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 26/152 (17%)
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFV--AAVKGYKLIVTMPASTNLERRILLRAFGAEI 205
+ K ++ T G + L + A +G++ IVT + E+ LL+ GA
Sbjct: 158 DIVKQEGEKAFVM--TAGASQLCKLIIGLAKEEGFRPIVT--VRRD-EQIALLKDIGAAH 212
Query: 206 ILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIF 265
+L + L ++ +I D+ + +
Sbjct: 213 VLNEKAPDFEATL----------------REVMKAEQPRIFLDAVTGPLASAIFNAMPKR 256
Query: 266 --VAAIGT-GGTITGTGRFLKMMNKEIKVVGV 294
G T +++ + + G
Sbjct: 257 ARWIIYGRLDPDATVIREPGQLIFQHKHIEGF 288
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or
tryptophan synthase BET like family, PLP dependent
enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium}
PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A*
4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Length = 342
Score = 32.4 bits (73), Expect = 0.19
Identities = 47/236 (19%), Positives = 77/236 (32%), Gaps = 30/236 (12%)
Query: 135 KDRIGYSMITDAEESGDITPGKTVLVE-PTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE 193
K R ++ DA G T++ N A VAA G + +
Sbjct: 65 KLRKLEFLVADALREG----ADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTT 120
Query: 194 --------RRILLRAFGAEIILTDPEKGL-RGALDKAEEIVLNTPNAYMFQQFDNMANLK 244
R+LL F +I + D A I Y+ + A
Sbjct: 121 AENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALGA 180
Query: 245 IHFDSTGPEIWEDTLGCV--DIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEP------ 296
+ + + EI + V V A G+ GT G L+ + +++++GV
Sbjct: 181 MGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAE 240
Query: 297 --AERSVISGENAGYVPSI--LDVQLLD----EVIKVTNDEAVNMARRLALEEGLL 344
+ + AG + D+ L D V ND + + LA EG+L
Sbjct: 241 QKPKVIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVL 296
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 32.3 bits (74), Expect = 0.21
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 36/157 (22%)
Query: 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGY---KLIVTMPASTNLERRILLRAFGAEII 206
G I PG V++ G +G+A VA +K K+I++ P + RR L + GA+ +
Sbjct: 209 GGIRPGDNVVI---LGGGPIGLAAVAILKHAGASKVILSEP---SEVRRNLAKELGADHV 262
Query: 207 LTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTG-PEIWEDTLGCVDIF 265
+ DP K + E VL+ N + + ++TG P++ + V
Sbjct: 263 I-DPTK------ENFVEAVLDYTNGLGAK---------LFLEATGVPQLVWPQIEEV--I 304
Query: 266 VAAIGTGGTITGTGR--------FLKMMNKEIKVVGV 294
A G T+ R + ++VG
Sbjct: 305 WRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGS 341
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 32.1 bits (73), Expect = 0.30
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 15/162 (9%)
Query: 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV--AAVKGYKLIVTMPASTNLERRIL 197
Y + + G VL+ +G GLG A G I ++ ++ +
Sbjct: 215 YRQLVS-RNGAGMKQGDNVLIWGASG--GLGSYATQFALAGGANPICV---VSSPQKAEI 268
Query: 198 LRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEIWE 256
RA GAE I+ +G R D+ + ++ ++ I F+ G E +
Sbjct: 269 CRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFG 328
Query: 257 DTLGCVDIF--VAAIG--TGGTITGTGRFLKMMNKEIKVVGV 294
++ + +G R+L M +++G
Sbjct: 329 ASVFVTRKGGTITTCASTSGYMHEYDNRYLWM--SLKRIIGS 368
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 31.5 bits (72), Expect = 0.38
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV--AAVKGYKLIVTMPASTN---LER 194
Y M+ D + PG +V+ N+G+G A + AA G + I +
Sbjct: 156 YRMLMD---FEQLQPGDSVIQ--NASNSGVGQAVIQIAAALGLRTINV--VRDRPDIQKL 208
Query: 195 RILLRAFGAEIILTDPEKGLRGALDKA 221
L++ GAE ++T+ E +
Sbjct: 209 SDRLKSLGAEHVITEEELRRPEMKNFF 235
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 30.6 bits (70), Expect = 0.62
Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 37/156 (23%)
Query: 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGY---KLIVTMPASTNLERRILLRAFGAEII 206
G +T G VLV G +G+ + K +++VT ++T L + GA+++
Sbjct: 167 GGVTLGHKVLV---CGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS---KAKEIGADLV 220
Query: 207 LTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFV 266
L ++ + K E + + + + + TG E + +
Sbjct: 221 LQISKESPQEIARKVEG--------QLGCKPE------VTIECTGAEA------SIQAGI 260
Query: 267 AAIGTGGTIT--GTGR------FLKMMNKEIKVVGV 294
A +GGT+ G G L +E+ + GV
Sbjct: 261 YATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGV 296
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 30.6 bits (69), Expect = 0.67
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKL--IVTMPASTNLERRILLRAFGAEII---L 207
KT+ V TG G + VAA G+ + V E L + L
Sbjct: 3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEE--LQAIPNVTLFQGPL 60
Query: 208 TDPEKGLRGALDKAEEIVLNTP 229
+ + + A +NT
Sbjct: 61 LNNVPLMDTLFEGAHLAFINTT 82
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 30.8 bits (69), Expect = 0.68
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 262 VDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGV------EPAERSVIS-----GENAGYV 310
D V TG T G + ++ V+ + E + + + G
Sbjct: 193 FDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVE 252
Query: 311 PSILDVQLLDEVI----KVTNDEAVNMARRLALEEGLL 344
D L V N+ + R A +EG+L
Sbjct: 253 HEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVL 290
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 30.4 bits (69), Expect = 0.76
Identities = 24/165 (14%), Positives = 44/165 (26%), Gaps = 53/165 (32%)
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE-II 206
+ VLV G +G+ F R +G E +
Sbjct: 174 CDDGTLNCRKVLV---VGTGPIGVLFTLL---------------------FRTYGLEVWM 209
Query: 207 LTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFD----STG--PEIWEDTLG 260
E EE N N+ +D + + FD +TG I + +
Sbjct: 210 ANRREP-TEVEQTVIEETKTNYYNSS--NGYDKLKDSVGKFDVIIDATGADVNILGNVI- 265
Query: 261 CVDIFVAAIGTGGTITGTG------------RFLKMMNKEIKVVG 293
+G G + G ++++ ++G
Sbjct: 266 ------PLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIG 304
>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI
protein structure initiative, northeast structural
genomics consortium, NESG; HET: C2E; 1.92A {Vibrio
cholerae} SCOP: b.45.2.1 b.45.2.2 PDB: 1yln_A* 3kyg_A*
Length = 251
Score = 30.1 bits (67), Expect = 0.91
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK----LIVTMPASTNLERRI 196
S I + + + + TT G G L+V MP + + +
Sbjct: 24 STINSTDALAMVEHSSELTLSITTP-VGTKFVCRTPFIGTHTDKFLLVEMPKISADDLQY 82
Query: 197 LLRAFGAEIIL 207
+ G + +
Sbjct: 83 FFQE-GFWMNI 92
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 30.3 bits (69), Expect = 0.97
Identities = 28/167 (16%), Positives = 46/167 (27%), Gaps = 58/167 (34%)
Query: 150 GDITPGKTVLVEPTTGNTGLG-IAFVAAVKGYKLIVTMPASTNLERRILLRAFGA-EIIL 207
K V++ G G I +A A GA +
Sbjct: 156 AQGCENKNVII------IGAGTIGLLAI-------------------QCAVALGAKSVTA 190
Query: 208 TD--PEKGLRGALDKAEEI----VLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG- 260
D EK L A+ N+ + + ++ +T G
Sbjct: 191 IDISSEK-----LALAKSFGAMQTFNSSEM------SAPQMQSVLRELRFNQLILETAGV 239
Query: 261 --CVDIFVAAIGTGGTIT--GTGR---------FLKMMNKEIKVVGV 294
V++ V G + GT F K++ KE+ V+G
Sbjct: 240 PQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGS 286
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 30.0 bits (68), Expect = 1.0
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 29/88 (32%)
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT--DP 210
+ LV T GN G+G+A V R L R F +++LT D
Sbjct: 2 SGIHVALV--TGGNKGIGLAIV--------------------RDLCRLFSGDVVLTARDV 39
Query: 211 EKGLRGALDKAEEIVLNTPNAYMFQQFD 238
+G + A +++ + F Q D
Sbjct: 40 TRG-QAA---VQQLQAEGLSPR-FHQLD 62
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 29.9 bits (67), Expect = 1.2
Identities = 20/142 (14%), Positives = 35/142 (24%), Gaps = 27/142 (19%)
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE-II 206
E+ + ++ N G + + G KL+ E+ LL+A GA +
Sbjct: 165 ETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNI--VRKQ-EQADLLKAQGAVHVC 221
Query: 207 LTDPE---KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVD 263
+ L AL + FD+TG +
Sbjct: 222 NAASPTFMQDLTEALVSTGATIA--------------------FDATGGGKLGGQILTCM 261
Query: 264 IFVAAIGTGGTITGTGRFLKMM 285
K +
Sbjct: 262 EAALNKSAREYSRYGSTTHKQV 283
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 29.3 bits (66), Expect = 1.4
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 262 VDIFVAAIGTGGTI----TGTGRFLKMMNKEIKVVGVEPAERSV 301
V + + G I GTG ++ +V GV+ +E +
Sbjct: 24 VAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEML 67
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 28.6 bits (64), Expect = 2.5
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 230 NAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI----TGTGRFLKMM 285
+ +M+ F+ N + + L V + G GTGRF +
Sbjct: 10 HHHMWHIFERFVNEYERWFLVHRFAYLSEL----QAVKCLLPEGRGVEIGVGTGRFAVPL 65
Query: 286 NKEIKVVGVEPAE 298
+GVEP+E
Sbjct: 66 K---IKIGVEPSE 75
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 28.8 bits (65), Expect = 3.2
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 26/79 (32%)
Query: 140 YSMITDAE--------ESGDITPGKTVLVEPTTGNTGLGI---AFVAAVKGYKLIVTMPA 188
M+TD E ESG GKTV NT I A +AA+ P
Sbjct: 163 QYMLTDRENQSILITGESGA---GKTV-------NTKRVIQYFAVIAAIGDRSKKDQSPG 212
Query: 189 STNLERRIL-----LRAFG 202
LE +I+ L AFG
Sbjct: 213 KGTLEDQIIQANPALEAFG 231
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH
domain, DNA-binding domain, DNA binding protein; NMR
{Escherichia coli} SCOP: a.60.2.3
Length = 78
Score = 26.3 bits (59), Expect = 3.7
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 10/35 (28%)
Query: 30 HRFA----------RFKTSSLSSINGALATRRRIL 54
H TSSL +I G RR++L
Sbjct: 6 HHHHHSSGLVPRGSHMNTSSLETIEGVGPKRRQML 40
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 28.3 bits (64), Expect = 3.7
Identities = 26/167 (15%), Positives = 47/167 (28%), Gaps = 57/167 (34%)
Query: 150 GDITPGKTVLVEPTTGNTGLG-IAFVAAVKGYKLIVTMPASTNLERRILLRAFGA-EIIL 207
I G TV + G G I + L R GA +IL
Sbjct: 178 SGIKAGSTVAI------LGGGVIGLLTV-------------------QLARLAGATTVIL 212
Query: 208 TDPEKGLRGALDKAEEI----VLNTPNAYMFQQFDNMANLKIH-----FDSTG-PEIWED 257
+ + + AEE+ ++ + + L + G E +
Sbjct: 213 STRQ-ATK--RRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQ 269
Query: 258 TLGCVDIFVAAIGTGGTITGTGRF----------LKMMNKEIKVVGV 294
+ GGT+ G ++ +E++V+G
Sbjct: 270 ST-------RLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGS 309
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 28.4 bits (64), Expect = 4.1
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 23/121 (19%)
Query: 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206
++ +I P + L G GL A G KLI T T ++ GA +
Sbjct: 133 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGT--VGTA-QKAQSALKAGAWQV 189
Query: 207 LTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH--FDSTGPEIWEDTLGCVDI 264
+ E+ L ++ +EI T K+ +DS G + WE +L C+
Sbjct: 190 INYREEDLV---ERLKEI---TGGK------------KVRVVYDSVGRDTWERSLDCLQR 231
Query: 265 F 265
Sbjct: 232 R 232
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 27.9 bits (63), Expect = 5.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 150 GDITPGKTVLVEPTTGNTGLGIAFV--AAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
G + G+TVLV G G+G A + A G K+I + +++ GA+I+L
Sbjct: 155 GQLRAGETVLVLGAAG--GIGTAAIQIAKGMGAKVIAV--VNRT-AATEFVKSVGADIVL 209
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2,
phospholipid biosynthesis structural genomics, protein
structure initiative; 1.40A {Escherichia coli} SCOP:
d.13.1.4
Length = 227
Score = 27.6 bits (61), Expect = 5.9
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 113 VTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGL 169
V E C+ N PC VK GY ++ D P + +L+ PT G
Sbjct: 14 VLEECLPNQQQNQNPS-PCAEVKPNAGYVVLKDLNG-----PLQYLLM-PTYRINGT 63
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Length = 444
Score = 27.9 bits (61), Expect = 6.2
Identities = 32/160 (20%), Positives = 48/160 (30%), Gaps = 22/160 (13%)
Query: 131 CRSVKDRIGYSMITDAEESGDITPGKTVL-------VEPTTGNT--GLGIAFVAAVKGYK 181
+ Y++I AE G + VL + TG G G+A V A
Sbjct: 227 SERRGETTSYNVI--AEVKGSTKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAA---- 280
Query: 182 LIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMA 241
+ ER I + + AE E GL G A+E Y+ + D A
Sbjct: 281 AKHILDLPQKPERTIRVVLYAAE------ELGLLGGKTYAKEHEAELEKHYIAAESDFGA 334
Query: 242 NLKIHFDSTGPEIWEDTLGCVDIFVAAIG-TGGTITGTGR 280
D + + +G G +G
Sbjct: 335 GPIYQIDWRVADTAHSPVINAMKVAEPLGVAAGNNKASGG 374
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A
{Methanocaldococcus jannaschii} PDB: 3prd_A
Length = 231
Score = 27.5 bits (61), Expect = 6.3
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 288 EIKVVGVEPAERSVISGENAGYVPSILD--VQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
IK+ V +++++ YVP + D V + + +K+ E + + +
Sbjct: 142 RIKIEEVVDDKKNIVKEIVKMYVPRLSDVKVTIRNGTVKIELPEFAPFIPNIQTAKMAIA 201
Query: 346 M 346
Sbjct: 202 N 202
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 27.5 bits (62), Expect = 6.5
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 56/168 (33%)
Query: 146 AEESGDITPGKTVLVEPTTGNTGLG-IAFVAAVKGYKLIVTMPASTNLERRILLRAFGA- 203
+G GK+VL+ TG G I +AA +++RA GA
Sbjct: 156 TVYAGSGVSGKSVLI------TGAGPIGLMAA-------------------MVVRASGAG 190
Query: 204 EIILTDP-----EKGLRGA---LDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255
I+++DP A ++ EE +L + + + +G E
Sbjct: 191 PILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVE------VLLEFSGNEA- 243
Query: 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMN---------KEIKVVGV 294
+ + A+ GG G + + I G+
Sbjct: 244 -----AIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGI 286
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 27.6 bits (62), Expect = 6.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 263 DIFVAAIGTGGTITGT-GRFLKMMNKEIKVVGVEPAERSVISGENA 307
D +AA+G G G F + K++GVE A + +G +A
Sbjct: 247 DALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHA 292
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 27.0 bits (60), Expect = 8.1
Identities = 21/178 (11%), Positives = 51/178 (28%), Gaps = 48/178 (26%)
Query: 177 VKGYKLI-VTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235
K + + A + + + +I+ ++ L A+ E +
Sbjct: 41 AKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDL--AIVHVHE-----TSTEGLN 93
Query: 236 QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIG---------TGGTITGTGRFLK--- 283
N++ K + G ++ + ++ IG TGT +
Sbjct: 94 FNKNVSYTK---FADGAKVKDR--------ISVIGYPKGAQTKYKMFESTGTINHISGTF 142
Query: 284 ---------------MMNKEIKVVGVEPAERSVISGENAGYV--PSILDVQLLDEVIK 324
++N + +++G+ A E V L + + + K
Sbjct: 143 MEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLKEFIQNNIEK 200
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 27.2 bits (61), Expect = 8.6
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 15/73 (20%)
Query: 146 AEESGDITPGKTVLVEPTTGNTGLG-----IAFVAAVKGYKLIVTMPASTNLERRILLRA 200
S + PG V + G G A A + G ++ N ER LL
Sbjct: 177 GCVSAGVKPGSHVYI------AGAGPVGRCAAAGARLLGAACVIVG--DQNPERLKLLSD 228
Query: 201 FGAEIILTDPEKG 213
G E I D
Sbjct: 229 AGFETI--DLRNS 239
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.369
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,272,418
Number of extensions: 338391
Number of successful extensions: 1084
Number of sequences better than 10.0: 1
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 94
Length of query: 347
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 253
Effective length of database: 4,077,219
Effective search space: 1031536407
Effective search space used: 1031536407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)