Query 019048
Match_columns 347
No_of_seqs 298 out of 2260
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2.9E-46 9.8E-51 364.6 17.7 217 68-322 21-266 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 9.5E-45 3.2E-49 355.8 18.9 206 70-321 2-235 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 4.5E-45 1.5E-49 355.8 15.9 208 70-320 3-239 (359)
4 3gfo_A Cobalt import ATP-bindi 100.0 1.9E-44 6.6E-49 340.2 14.9 201 70-310 6-234 (275)
5 2it1_A 362AA long hypothetical 100.0 2.8E-43 9.5E-48 343.9 18.8 205 70-320 2-234 (362)
6 1oxx_K GLCV, glucose, ABC tran 100.0 9.5E-44 3.3E-48 346.4 15.4 212 70-320 2-241 (353)
7 1z47_A CYSA, putative ABC-tran 100.0 2.6E-43 8.9E-48 343.1 18.5 207 68-320 11-246 (355)
8 1b0u_A Histidine permease; ABC 100.0 1.2E-43 4E-48 332.5 15.4 212 70-320 5-253 (262)
9 2olj_A Amino acid ABC transpor 100.0 1.4E-43 4.9E-48 332.2 15.4 207 70-317 23-256 (263)
10 1v43_A Sugar-binding transport 100.0 2.1E-43 7.3E-48 345.9 15.9 205 69-320 9-242 (372)
11 2yyz_A Sugar ABC transporter, 100.0 2.9E-43 9.9E-48 343.4 16.7 205 70-320 2-234 (359)
12 3tif_A Uncharacterized ABC tra 100.0 3.1E-43 1.1E-47 324.6 15.6 203 71-308 1-233 (235)
13 3d31_A Sulfate/molybdate ABC t 100.0 3.6E-43 1.2E-47 341.5 16.0 201 71-321 1-229 (348)
14 1g29_1 MALK, maltose transport 100.0 6.4E-43 2.2E-47 342.7 17.0 211 70-320 2-240 (372)
15 3nh6_A ATP-binding cassette SU 100.0 2.6E-43 8.8E-48 337.1 13.3 201 70-310 52-278 (306)
16 2onk_A Molybdate/tungstate ABC 100.0 8.2E-42 2.8E-46 316.2 21.4 203 71-325 1-231 (240)
17 4g1u_C Hemin import ATP-bindin 100.0 1.4E-42 4.7E-47 326.0 14.5 195 69-309 9-237 (266)
18 1g6h_A High-affinity branched- 100.0 1.3E-42 4.3E-47 324.5 14.1 196 69-306 5-239 (257)
19 1vpl_A ABC transporter, ATP-bi 100.0 5.1E-42 1.7E-46 320.5 16.1 197 68-310 12-236 (256)
20 2pcj_A ABC transporter, lipopr 100.0 9.5E-42 3.2E-46 312.4 16.4 193 70-303 3-222 (224)
21 1ji0_A ABC transporter; ATP bi 100.0 6E-42 2.1E-46 316.8 13.3 197 69-309 4-228 (240)
22 2yz2_A Putative ABC transporte 100.0 1.1E-41 3.7E-46 319.8 13.1 198 71-313 2-231 (266)
23 2ff7_A Alpha-hemolysin translo 100.0 2.2E-41 7.5E-46 314.5 13.2 206 71-315 7-238 (247)
24 1mv5_A LMRA, multidrug resista 100.0 9.4E-41 3.2E-45 309.3 13.7 201 71-309 1-226 (243)
25 2ihy_A ABC transporter, ATP-bi 100.0 8.6E-41 2.9E-45 315.9 13.1 202 69-309 19-252 (279)
26 2d2e_A SUFC protein; ABC-ATPas 100.0 2.8E-40 9.5E-45 307.4 15.4 195 70-305 2-229 (250)
27 3gd7_A Fusion complex of cysti 100.0 3.7E-41 1.3E-45 331.8 9.4 202 69-321 17-254 (390)
28 2ixe_A Antigen peptide transpo 100.0 1.1E-40 3.6E-45 313.9 11.2 198 70-310 15-246 (271)
29 3b5x_A Lipid A export ATP-bind 100.0 9.8E-40 3.4E-44 337.0 17.1 227 47-310 311-568 (582)
30 2zu0_C Probable ATP-dependent 100.0 2.5E-39 8.5E-44 303.9 17.9 202 69-308 18-253 (267)
31 4f4c_A Multidrug resistance pr 100.0 3.1E-40 1.1E-44 367.7 11.1 231 46-311 1043-1306(1321)
32 4a82_A Cystic fibrosis transme 100.0 6.1E-40 2.1E-44 338.3 12.5 226 47-310 307-565 (578)
33 3b60_A Lipid A export ATP-bind 100.0 1.6E-39 5.4E-44 335.5 13.7 225 48-310 312-568 (582)
34 2yl4_A ATP-binding cassette SU 100.0 1.9E-39 6.6E-44 335.6 14.1 233 49-315 310-576 (595)
35 3qf4_A ABC transporter, ATP-bi 100.0 1.4E-39 4.7E-44 336.3 11.8 225 48-310 310-567 (587)
36 2nq2_C Hypothetical ABC transp 100.0 7.1E-39 2.4E-43 298.7 15.4 183 70-309 3-217 (253)
37 3qf4_B Uncharacterized ABC tra 100.0 7E-40 2.4E-44 339.2 9.1 224 48-310 324-579 (598)
38 2ghi_A Transport protein; mult 100.0 2.7E-39 9.3E-44 302.5 11.4 203 70-310 16-243 (260)
39 2qi9_C Vitamin B12 import ATP- 100.0 3.4E-39 1.2E-43 300.2 11.8 185 71-309 4-222 (249)
40 4f4c_A Multidrug resistance pr 100.0 3.2E-39 1.1E-43 359.6 12.5 227 47-310 382-642 (1321)
41 2pjz_A Hypothetical protein ST 100.0 2.4E-38 8.3E-43 296.7 13.2 187 71-309 1-215 (263)
42 1sgw_A Putative ABC transporte 100.0 2E-38 6.8E-43 288.8 11.0 175 69-298 8-210 (214)
43 2pze_A Cystic fibrosis transme 100.0 4.3E-37 1.5E-41 282.4 15.4 188 70-310 5-219 (229)
44 2cbz_A Multidrug resistance-as 100.0 5.9E-37 2E-41 282.9 13.6 185 70-310 2-218 (237)
45 3g5u_A MCG1178, multidrug resi 100.0 6.8E-37 2.3E-41 340.1 10.1 226 48-310 355-614 (1284)
46 3g5u_A MCG1178, multidrug resi 100.0 3.1E-36 1.1E-40 334.9 10.0 228 48-310 998-1259(1284)
47 2bbs_A Cystic fibrosis transme 100.0 6.8E-35 2.3E-39 276.9 13.2 182 70-309 39-247 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 1.7E-31 5.8E-36 276.6 13.9 178 69-309 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.6E-31 5.5E-36 273.4 12.7 178 69-309 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-31 4.2E-36 274.1 11.2 176 69-305 267-473 (538)
51 2iw3_A Elongation factor 3A; a 100.0 3.4E-30 1.2E-34 277.0 11.8 209 69-303 669-981 (986)
52 3j16_B RLI1P; ribosome recycli 100.0 5.1E-30 1.7E-34 265.4 12.3 174 75-309 350-559 (608)
53 3bk7_A ABC transporter ATP-bin 100.0 9.2E-31 3.1E-35 271.1 4.6 179 70-296 82-304 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.5E-30 5E-35 266.3 3.4 177 72-296 21-234 (538)
55 3ux8_A Excinuclease ABC, A sub 100.0 3E-29 1E-33 262.6 10.0 190 93-312 34-301 (670)
56 3ux8_A Excinuclease ABC, A sub 99.9 1.2E-27 3.9E-32 250.6 14.4 97 208-322 521-652 (670)
57 3j16_B RLI1P; ribosome recycli 99.9 1.1E-28 3.9E-33 255.3 4.6 176 76-297 82-298 (608)
58 2iw3_A Elongation factor 3A; a 99.9 4.8E-27 1.6E-31 252.6 14.9 175 71-309 435-635 (986)
59 3ozx_A RNAse L inhibitor; ATP 99.9 3.9E-28 1.3E-32 248.3 4.3 174 75-297 3-214 (538)
60 3pih_A Uvrabc system protein A 99.9 8.4E-26 2.9E-30 242.3 12.3 96 208-321 783-913 (916)
61 2vf7_A UVRA2, excinuclease ABC 99.9 4.1E-25 1.4E-29 235.3 16.9 95 208-321 708-838 (842)
62 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.4E-28 4.9E-33 247.1 -13.9 173 69-307 116-336 (460)
63 2r6f_A Excinuclease ABC subuni 99.9 3E-24 1E-28 229.8 14.1 95 209-321 824-953 (972)
64 2ygr_A Uvrabc system protein A 99.9 1.3E-23 4.5E-28 225.5 12.8 95 209-321 842-971 (993)
65 4aby_A DNA repair protein RECN 99.9 6.8E-23 2.3E-27 201.6 10.7 54 247-301 296-380 (415)
66 2v9p_A Replication protein E1; 99.9 7.5E-25 2.6E-29 209.0 -12.0 177 50-307 74-264 (305)
67 1e69_A Chromosome segregation 99.8 4.6E-20 1.6E-24 176.6 12.1 59 240-298 213-301 (322)
68 4gp7_A Metallophosphoesterase; 99.8 3.1E-20 1.1E-24 162.0 5.2 30 95-124 1-30 (171)
69 2dpy_A FLII, flagellum-specifi 99.8 4.6E-22 1.6E-26 198.6 -10.9 183 70-311 130-346 (438)
70 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 5.2E-19 1.8E-23 172.6 10.5 59 241-300 274-364 (365)
71 3b9q_A Chloroplast SRP recepto 99.8 2.3E-20 8E-25 177.8 -2.1 157 95-299 92-285 (302)
72 3b85_A Phosphate starvation-in 99.7 1.5E-20 5E-25 170.0 -4.8 34 101-140 20-53 (208)
73 1tq4_A IIGP1, interferon-induc 99.7 1.7E-20 5.8E-25 185.8 -5.2 139 93-290 39-248 (413)
74 1z6g_A Guanylate kinase; struc 99.7 2.6E-20 9E-25 168.8 -6.5 45 93-146 13-57 (218)
75 1znw_A Guanylate kinase, GMP k 99.7 1.1E-19 3.6E-24 163.0 -2.5 34 93-128 12-45 (207)
76 3sop_A Neuronal-specific septi 99.7 7.9E-20 2.7E-24 171.5 -3.8 127 105-279 4-148 (270)
77 2og2_A Putative signal recogni 99.7 3.1E-19 1.1E-23 173.8 -1.5 157 95-299 149-342 (359)
78 2obl_A ESCN; ATPase, hydrolase 99.7 2.6E-20 8.8E-25 180.8 -10.4 189 70-312 44-258 (347)
79 1tf7_A KAIC; homohexamer, hexa 99.7 9.3E-21 3.2E-25 193.0 -14.8 65 70-145 11-78 (525)
80 2vf7_A UVRA2, excinuclease ABC 99.7 3E-16 1E-20 167.2 18.0 89 206-312 356-478 (842)
81 1ye8_A Protein THEP1, hypothet 99.7 6.4E-18 2.2E-22 148.9 1.6 49 240-288 70-152 (178)
82 3aez_A Pantothenate kinase; tr 99.7 4.9E-20 1.7E-24 176.3 -13.3 170 70-309 42-255 (312)
83 2o5v_A DNA replication and rep 99.6 1.5E-15 5.2E-20 147.8 15.1 63 241-307 259-354 (359)
84 2pt7_A CAG-ALFA; ATPase, prote 99.6 5.9E-18 2E-22 163.0 -3.5 47 93-144 161-207 (330)
85 1cr0_A DNA primase/helicase; R 99.6 6.8E-16 2.3E-20 145.2 5.0 46 93-143 25-71 (296)
86 1tf7_A KAIC; homohexamer, hexa 99.6 3.6E-16 1.2E-20 159.2 1.8 126 97-297 275-444 (525)
87 2o8b_B DNA mismatch repair pro 99.5 1.3E-15 4.5E-20 165.7 4.0 53 70-128 749-813 (1022)
88 3pih_A Uvrabc system protein A 99.5 3.6E-15 1.2E-19 160.2 6.4 93 210-319 444-570 (916)
89 3qkt_A DNA double-strand break 99.5 5.9E-14 2E-18 135.1 14.0 55 239-294 241-327 (339)
90 2qnr_A Septin-2, protein NEDD5 99.5 9.9E-17 3.4E-21 152.4 -7.6 144 75-280 2-166 (301)
91 3thx_A DNA mismatch repair pro 99.5 2.4E-14 8.1E-19 154.3 7.7 61 246-307 721-811 (934)
92 1rj9_A FTSY, signal recognitio 99.5 6.7E-15 2.3E-19 140.2 3.0 41 102-147 101-141 (304)
93 1pui_A ENGB, probable GTP-bind 99.5 1.6E-15 5.6E-20 134.2 -1.2 62 71-141 3-64 (210)
94 4ad8_A DNA repair protein RECN 99.5 4.7E-14 1.6E-18 143.3 9.0 56 241-297 391-474 (517)
95 2eyu_A Twitching motility prot 99.5 7.4E-15 2.5E-19 136.9 2.8 60 71-147 5-65 (261)
96 1lw7_A Transcriptional regulat 99.5 4.5E-16 1.5E-20 151.3 -7.4 175 94-308 159-354 (365)
97 2jeo_A Uridine-cytidine kinase 99.4 4.3E-15 1.5E-19 136.3 -1.4 36 93-128 15-50 (245)
98 4a74_A DNA repair and recombin 99.4 9E-14 3.1E-18 124.5 6.6 162 99-297 21-201 (231)
99 1w1w_A Structural maintenance 99.4 1E-12 3.5E-17 130.2 13.2 52 242-294 329-410 (430)
100 2r6f_A Excinuclease ABC subuni 99.4 3.6E-13 1.2E-17 144.4 9.0 89 206-312 481-603 (972)
101 2ehv_A Hypothetical protein PH 99.4 1.2E-13 4.1E-18 125.2 3.8 62 71-145 6-69 (251)
102 3thx_B DNA mismatch repair pro 99.4 9.2E-14 3.1E-18 149.4 2.8 36 93-128 663-698 (918)
103 3asz_A Uridine kinase; cytidin 99.4 8.7E-15 3E-19 130.4 -4.4 30 99-128 2-31 (211)
104 2i3b_A HCR-ntpase, human cance 99.4 8.8E-15 3E-19 130.1 -5.8 54 103-169 1-54 (189)
105 2yhs_A FTSY, cell division pro 99.3 4.6E-13 1.6E-17 134.9 5.6 49 94-147 284-332 (503)
106 2rcn_A Probable GTPase ENGC; Y 99.3 3.9E-13 1.3E-17 130.7 4.9 122 93-261 206-328 (358)
107 2w0m_A SSO2452; RECA, SSPF, un 99.3 1.3E-12 4.4E-17 116.7 7.5 47 93-144 12-59 (235)
108 3szr_A Interferon-induced GTP- 99.3 9.8E-15 3.4E-19 151.2 -7.6 197 70-307 9-235 (608)
109 2ygr_A Uvrabc system protein A 99.3 6.8E-13 2.3E-17 142.7 6.2 89 206-312 498-620 (993)
110 2yv5_A YJEQ protein; hydrolase 99.3 2.3E-14 8E-19 136.1 -4.9 130 99-259 161-300 (302)
111 3e70_C DPA, signal recognition 99.3 7.2E-14 2.5E-18 134.4 -2.1 44 99-147 125-168 (328)
112 1nij_A Hypothetical protein YJ 99.3 2.3E-14 8E-19 136.9 -5.8 153 104-279 5-187 (318)
113 2f1r_A Molybdopterin-guanine d 99.3 1E-14 3.4E-19 127.8 -8.0 39 104-147 3-44 (171)
114 1htw_A HI0065; nucleotide-bind 99.3 3E-14 1E-18 123.1 -6.4 63 73-147 9-71 (158)
115 1ewq_A DNA mismatch repair pro 99.3 1.3E-12 4.6E-17 138.2 3.4 33 93-128 569-601 (765)
116 2qag_C Septin-7; cell cycle, c 99.2 4.3E-13 1.5E-17 133.0 -2.3 47 70-128 10-56 (418)
117 1u0l_A Probable GTPase ENGC; p 99.2 2.9E-13 9.8E-18 128.4 -3.6 122 98-249 164-294 (301)
118 1p9r_A General secretion pathw 99.2 1.3E-14 4.6E-19 143.8 -13.4 43 100-147 164-206 (418)
119 1wb9_A DNA mismatch repair pro 99.2 3E-12 1E-16 136.2 3.1 35 93-128 598-632 (800)
120 1f2t_B RAD50 ABC-ATPase; DNA d 99.2 1.1E-11 3.7E-16 106.0 5.3 54 240-294 51-136 (148)
121 1zp6_A Hypothetical protein AT 99.2 2.6E-13 8.8E-18 118.6 -5.1 41 99-146 5-45 (191)
122 2qag_B Septin-6, protein NEDD5 99.2 2.3E-13 7.9E-18 135.0 -6.4 167 71-279 16-217 (427)
123 1pzn_A RAD51, DNA repair and r 99.2 1.1E-11 3.7E-16 120.0 4.6 50 93-145 120-175 (349)
124 3jvv_A Twitching mobility prot 99.2 5.6E-12 1.9E-16 122.5 2.3 60 75-143 92-159 (356)
125 1nlf_A Regulatory protein REPA 99.2 8.6E-11 2.9E-15 109.5 10.0 30 99-128 26-55 (279)
126 3euj_A Chromosome partition pr 99.2 1.3E-11 4.6E-16 124.2 4.7 49 93-147 20-68 (483)
127 2qm8_A GTPase/ATPase; G protei 99.1 1E-12 3.5E-17 126.7 -6.7 67 70-147 28-94 (337)
128 1udx_A The GTP-binding protein 99.1 4.3E-11 1.5E-15 118.5 4.4 35 93-127 147-181 (416)
129 2cvh_A DNA repair and recombin 99.1 2.7E-10 9.3E-15 101.0 9.2 41 96-143 12-53 (220)
130 2ewv_A Twitching motility prot 99.1 3.6E-11 1.2E-15 117.4 2.5 42 100-146 133-175 (372)
131 2gza_A Type IV secretion syste 99.1 8E-12 2.7E-16 121.5 -2.4 46 94-144 166-211 (361)
132 3kta_B Chromosome segregation 99.0 1.6E-10 5.4E-15 101.3 6.0 63 229-291 47-138 (173)
133 1n0w_A DNA repair protein RAD5 99.0 5.6E-10 1.9E-14 100.5 9.6 42 99-145 20-68 (243)
134 1t9h_A YLOQ, probable GTPase E 99.0 1.7E-11 5.9E-16 116.8 -3.1 45 98-147 168-215 (307)
135 2x8a_A Nuclear valosin-contain 99.0 6.7E-13 2.3E-17 124.3 -13.8 46 93-147 36-81 (274)
136 1in4_A RUVB, holliday junction 99.0 2.9E-13 9.9E-18 129.9 -16.8 68 71-145 18-92 (334)
137 3tr0_A Guanylate kinase, GMP k 98.9 1.1E-09 3.7E-14 96.3 5.8 42 97-147 1-42 (205)
138 1qhl_A Protein (cell division 98.9 7.3E-11 2.5E-15 107.8 -2.5 58 71-147 9-66 (227)
139 1sq5_A Pantothenate kinase; P- 98.9 3.4E-11 1.2E-15 114.4 -5.0 65 70-145 36-122 (308)
140 3lda_A DNA repair protein RAD5 98.9 2.7E-09 9.1E-14 105.2 8.1 42 99-145 174-222 (400)
141 1odf_A YGR205W, hypothetical 3 98.9 8.6E-11 2.9E-15 111.0 -3.3 28 101-128 29-56 (290)
142 2bbw_A Adenylate kinase 4, AK4 98.9 2.4E-11 8.4E-16 111.0 -7.0 39 102-145 26-67 (246)
143 1s96_A Guanylate kinase, GMP k 98.9 7.4E-10 2.5E-14 100.4 2.8 45 96-145 9-55 (219)
144 2bdt_A BH3686; alpha-beta prot 98.8 9.7E-10 3.3E-14 95.9 3.4 36 103-146 2-37 (189)
145 3lnc_A Guanylate kinase, GMP k 98.8 5.7E-10 2E-14 100.8 1.8 36 93-128 17-53 (231)
146 3nwj_A ATSK2; P loop, shikimat 98.8 3.8E-10 1.3E-14 104.4 -1.9 54 70-128 16-73 (250)
147 1vma_A Cell division protein F 98.7 5.4E-09 1.9E-13 99.4 4.5 46 96-146 97-142 (306)
148 3c8u_A Fructokinase; YP_612366 98.7 4.6E-09 1.6E-13 93.5 2.5 42 100-146 19-63 (208)
149 2ius_A DNA translocase FTSK; n 98.6 4.2E-09 1.4E-13 106.7 0.3 47 96-147 160-208 (512)
150 2oap_1 GSPE-2, type II secreti 98.6 5.4E-09 1.8E-13 106.1 0.6 48 93-145 250-297 (511)
151 3kta_A Chromosome segregation 98.6 6E-08 2.1E-12 83.8 6.4 34 94-128 18-51 (182)
152 1lvg_A Guanylate kinase, GMP k 98.5 1.6E-08 5.5E-13 89.6 1.9 28 101-128 2-29 (198)
153 3uie_A Adenylyl-sulfate kinase 98.5 5.5E-09 1.9E-13 92.3 -1.3 61 75-147 3-65 (200)
154 1ls1_A Signal recognition part 98.5 1.3E-07 4.5E-12 89.2 7.5 61 72-147 77-137 (295)
155 2j41_A Guanylate kinase; GMP, 98.5 4.9E-08 1.7E-12 85.6 3.7 31 98-128 1-31 (207)
156 3auy_A DNA double-strand break 98.5 2.3E-07 7.9E-12 90.0 8.5 83 210-294 245-359 (371)
157 3vaa_A Shikimate kinase, SK; s 98.4 8.4E-08 2.9E-12 84.6 3.5 36 93-128 15-50 (199)
158 1sxj_E Activator 1 40 kDa subu 98.4 1.3E-07 4.4E-12 90.0 4.8 36 106-146 39-75 (354)
159 3a00_A Guanylate kinase, GMP k 98.4 1E-07 3.4E-12 83.2 2.5 26 103-128 1-26 (186)
160 4e22_A Cytidylate kinase; P-lo 98.4 4.4E-08 1.5E-12 90.0 0.0 42 101-147 25-77 (252)
161 1kgd_A CASK, peripheral plasma 98.4 1.3E-07 4.3E-12 82.2 2.9 27 102-128 4-30 (180)
162 4eun_A Thermoresistant glucoki 98.3 1.6E-07 5.5E-12 82.8 3.1 41 97-146 23-63 (200)
163 2r6a_A DNAB helicase, replicat 98.3 1.1E-06 3.7E-11 87.6 8.2 46 93-143 193-239 (454)
164 1rz3_A Hypothetical protein rb 98.3 1.8E-07 6.3E-12 82.7 2.3 43 99-146 18-60 (201)
165 1zu4_A FTSY; GTPase, signal re 98.3 2.2E-07 7.4E-12 88.8 2.0 49 94-147 96-144 (320)
166 3ec2_A DNA replication protein 98.2 1.6E-07 5.4E-12 81.2 0.6 36 97-137 32-67 (180)
167 2kjq_A DNAA-related protein; s 98.2 3.5E-07 1.2E-11 77.6 2.7 39 102-146 35-75 (149)
168 3hr8_A Protein RECA; alpha and 98.2 1.8E-07 6.2E-12 90.7 0.1 41 99-144 57-98 (356)
169 1oix_A RAS-related protein RAB 98.2 9.4E-07 3.2E-11 77.0 4.1 42 105-146 31-78 (191)
170 2vp4_A Deoxynucleoside kinase; 98.2 6.9E-07 2.4E-11 80.7 2.8 41 97-146 14-54 (230)
171 3cr8_A Sulfate adenylyltranfer 98.2 8E-07 2.8E-11 90.9 3.5 43 99-146 365-409 (552)
172 2qtf_A Protein HFLX, GTP-bindi 98.1 5.1E-06 1.7E-10 80.6 8.9 42 105-146 181-228 (364)
173 3tau_A Guanylate kinase, GMP k 98.1 1.1E-06 3.9E-11 78.0 3.9 28 101-128 6-33 (208)
174 1ixz_A ATP-dependent metallopr 98.1 4.6E-07 1.6E-11 82.5 1.0 45 93-146 41-85 (254)
175 1svm_A Large T antigen; AAA+ f 98.1 5.8E-07 2E-11 87.8 1.3 36 93-128 159-194 (377)
176 1iy2_A ATP-dependent metallopr 98.1 5.8E-07 2E-11 83.2 1.1 45 93-146 65-109 (278)
177 3tqc_A Pantothenate kinase; bi 98.1 4.6E-07 1.6E-11 86.7 -0.2 48 93-143 76-129 (321)
178 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 2.4E-06 8.1E-11 83.9 4.4 47 99-145 16-69 (392)
179 3ney_A 55 kDa erythrocyte memb 98.0 2.2E-06 7.4E-11 76.4 3.5 33 96-128 12-44 (197)
180 2f9l_A RAB11B, member RAS onco 98.0 2.6E-06 9E-11 74.3 3.9 42 105-146 7-54 (199)
181 3ice_A Transcription terminati 98.0 7.2E-07 2.5E-11 87.2 0.1 53 71-128 133-199 (422)
182 1knq_A Gluconate kinase; ALFA/ 98.0 2.7E-06 9.4E-11 72.7 3.5 37 101-146 6-42 (175)
183 1kag_A SKI, shikimate kinase I 98.0 2.9E-06 9.8E-11 72.2 3.0 27 102-128 3-29 (173)
184 3lxx_A GTPase IMAP family memb 97.9 0.00011 3.8E-09 66.0 12.9 24 105-128 31-54 (239)
185 2pez_A Bifunctional 3'-phospho 97.9 4.7E-06 1.6E-10 71.7 3.3 40 101-146 3-44 (179)
186 2p67_A LAO/AO transport system 97.9 1.6E-06 5.6E-11 83.1 0.4 65 71-146 30-94 (341)
187 1cke_A CK, MSSA, protein (cyti 97.9 2.4E-06 8.2E-11 76.0 1.1 34 103-141 5-41 (227)
188 2px0_A Flagellar biosynthesis 97.9 4.1E-06 1.4E-10 79.0 2.6 40 101-145 103-143 (296)
189 2qt1_A Nicotinamide riboside k 97.9 5.1E-06 1.7E-10 73.2 3.0 30 99-128 17-46 (207)
190 2dy1_A Elongation factor G; tr 97.9 3.6E-06 1.2E-10 87.9 2.0 46 97-146 3-48 (665)
191 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 8.4E-06 2.9E-10 69.0 3.8 34 93-127 14-47 (149)
192 2www_A Methylmalonic aciduria 97.9 5.9E-06 2E-10 79.6 3.2 42 101-147 72-113 (349)
193 4eaq_A DTMP kinase, thymidylat 97.8 1E-05 3.4E-10 73.3 4.5 43 93-141 13-58 (229)
194 1m7g_A Adenylylsulfate kinase; 97.8 7.3E-06 2.5E-10 72.6 2.6 43 98-145 20-64 (211)
195 3t34_A Dynamin-related protein 97.7 3.1E-06 1.1E-10 81.5 -0.9 40 93-140 27-68 (360)
196 3k1j_A LON protease, ATP-depen 97.7 5.4E-06 1.9E-10 85.4 0.5 49 93-146 50-99 (604)
197 3m6a_A ATP-dependent protease 97.7 6.7E-06 2.3E-10 83.8 0.5 46 93-144 99-144 (543)
198 2ffh_A Protein (FFH); SRP54, s 97.6 1.7E-05 5.9E-10 78.5 2.9 59 74-147 79-137 (425)
199 2dr3_A UPF0273 protein PH0284; 97.6 3.8E-05 1.3E-09 68.6 4.4 42 97-143 17-59 (247)
200 1f6b_A SAR1; gtpases, N-termin 97.6 1E-05 3.4E-10 70.8 0.5 32 93-125 16-47 (198)
201 1m2o_B GTP-binding protein SAR 97.6 3.8E-05 1.3E-09 66.4 4.2 32 93-125 14-45 (190)
202 2yvu_A Probable adenylyl-sulfa 97.6 3.6E-05 1.2E-09 66.5 3.9 40 99-143 9-49 (186)
203 2gj8_A MNME, tRNA modification 97.6 4.6E-05 1.6E-09 65.0 4.4 27 101-127 2-28 (172)
204 3qks_A DNA double-strand break 97.6 3.6E-05 1.2E-09 68.3 3.8 35 93-128 14-48 (203)
205 1j8m_F SRP54, signal recogniti 97.6 1.3E-05 4.3E-10 75.7 0.7 60 74-147 77-137 (297)
206 1y63_A LMAJ004144AAA protein; 97.6 3.1E-05 1.1E-09 67.1 3.1 31 96-126 3-33 (184)
207 1jjv_A Dephospho-COA kinase; P 97.6 3.5E-05 1.2E-09 67.6 3.3 21 105-125 4-24 (206)
208 2qor_A Guanylate kinase; phosp 97.5 3.5E-05 1.2E-09 67.8 3.0 30 99-128 8-37 (204)
209 2dhr_A FTSH; AAA+ protein, hex 97.5 2.4E-05 8E-10 79.1 1.4 45 93-146 56-100 (499)
210 2if2_A Dephospho-COA kinase; a 97.4 5.5E-05 1.9E-09 66.1 3.0 21 105-125 3-23 (204)
211 2wjg_A FEOB, ferrous iron tran 97.4 8.8E-05 3E-09 63.2 3.9 22 105-126 9-30 (188)
212 1mky_A Probable GTP-binding pr 97.4 9.9E-05 3.4E-09 73.0 4.8 43 104-146 181-230 (439)
213 3auy_A DNA double-strand break 97.4 0.00017 5.9E-09 69.6 6.3 32 93-125 16-47 (371)
214 2wji_A Ferrous iron transport 97.4 0.00013 4.5E-09 61.3 4.7 23 105-127 5-27 (165)
215 4a1f_A DNAB helicase, replicat 97.4 0.0002 6.9E-09 68.7 6.3 36 93-128 36-71 (338)
216 1np6_A Molybdopterin-guanine d 97.3 0.00012 4.2E-09 63.6 4.0 40 104-145 7-46 (174)
217 1ega_A Protein (GTP-binding pr 97.3 7.4E-05 2.5E-09 70.2 2.3 26 102-127 7-32 (301)
218 3t61_A Gluconokinase; PSI-biol 97.3 9.7E-05 3.3E-09 64.6 2.8 25 103-127 18-42 (202)
219 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00012 4E-09 71.9 3.4 46 99-144 18-69 (396)
220 3cm0_A Adenylate kinase; ATP-b 97.3 0.00012 4.2E-09 62.7 3.1 27 101-127 2-28 (186)
221 2qag_A Septin-2, protein NEDD5 97.2 2.5E-05 8.5E-10 75.5 -1.8 47 70-128 16-62 (361)
222 2zej_A Dardarin, leucine-rich 97.2 0.00016 5.5E-09 61.9 3.2 24 105-128 4-27 (184)
223 3kb2_A SPBC2 prophage-derived 97.2 0.00016 5.5E-09 60.8 3.1 24 105-128 3-26 (173)
224 2p5t_B PEZT; postsegregational 97.2 0.00017 5.9E-09 65.7 3.5 41 99-146 28-68 (253)
225 1lv7_A FTSH; alpha/beta domain 97.2 0.00014 4.7E-09 66.0 2.4 31 96-128 40-70 (257)
226 2ga8_A Hypothetical 39.9 kDa p 97.2 5.3E-05 1.8E-09 73.3 -0.5 36 93-128 12-49 (359)
227 1q3t_A Cytidylate kinase; nucl 97.1 0.00021 7.3E-09 64.2 3.5 29 99-127 12-40 (236)
228 1qhx_A CPT, protein (chloramph 97.1 0.00025 8.6E-09 60.3 3.6 26 103-128 3-28 (178)
229 3ihw_A Centg3; RAS, centaurin, 97.1 0.00065 2.2E-08 58.3 6.1 21 105-125 22-42 (184)
230 1gtv_A TMK, thymidylate kinase 97.0 0.00013 4.4E-09 63.9 1.0 24 105-128 2-25 (214)
231 1sxj_C Activator 1 40 kDa subu 97.0 7.2E-05 2.5E-09 71.0 -0.8 36 93-128 34-71 (340)
232 3lw7_A Adenylate kinase relate 97.0 0.00032 1.1E-08 58.6 3.2 19 105-123 3-21 (179)
233 1kht_A Adenylate kinase; phosp 97.0 0.00036 1.2E-08 59.6 3.4 26 103-128 3-28 (192)
234 2jaq_A Deoxyguanosine kinase; 97.0 0.00034 1.2E-08 60.5 3.2 24 105-128 2-25 (205)
235 2rhm_A Putative kinase; P-loop 97.0 0.00037 1.3E-08 59.8 3.4 27 101-127 3-29 (193)
236 1vht_A Dephospho-COA kinase; s 97.0 0.00043 1.5E-08 61.1 3.9 24 102-125 3-26 (218)
237 3r20_A Cytidylate kinase; stru 97.0 0.00034 1.2E-08 63.7 3.2 25 103-127 9-33 (233)
238 2zr9_A Protein RECA, recombina 96.9 0.00039 1.3E-08 66.9 3.5 30 99-128 57-86 (349)
239 2ze6_A Isopentenyl transferase 96.9 0.00046 1.6E-08 63.1 3.5 24 105-128 3-26 (253)
240 3trf_A Shikimate kinase, SK; a 96.9 0.00047 1.6E-08 59.0 3.3 26 103-128 5-30 (185)
241 1via_A Shikimate kinase; struc 96.9 0.00037 1.3E-08 59.4 2.6 24 105-128 6-29 (175)
242 1uf9_A TT1252 protein; P-loop, 96.9 0.00054 1.9E-08 59.2 3.6 24 103-126 8-31 (203)
243 3kl4_A SRP54, signal recogniti 96.9 0.00041 1.4E-08 68.8 3.0 41 102-147 96-136 (433)
244 2xau_A PRE-mRNA-splicing facto 96.9 0.0006 2.1E-08 72.3 4.5 30 99-128 105-134 (773)
245 2v54_A DTMP kinase, thymidylat 96.9 0.00059 2E-08 59.1 3.7 26 102-127 3-28 (204)
246 3iij_A Coilin-interacting nucl 96.9 0.0003 1E-08 60.1 1.6 27 101-127 9-35 (180)
247 3bh0_A DNAB-like replicative h 96.8 0.00041 1.4E-08 65.5 2.7 36 93-128 58-93 (315)
248 1ly1_A Polynucleotide kinase; 96.8 0.00057 1.9E-08 57.8 3.3 22 104-125 3-24 (181)
249 1ypw_A Transitional endoplasmi 96.8 0.00033 1.1E-08 74.6 2.1 31 98-128 233-263 (806)
250 1ex7_A Guanylate kinase; subst 96.8 0.00054 1.8E-08 60.2 3.1 23 106-128 4-26 (186)
251 2plr_A DTMP kinase, probable t 96.8 0.00068 2.3E-08 58.9 3.7 27 102-128 3-29 (213)
252 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00066 2.3E-08 65.7 3.8 37 102-143 34-70 (392)
253 2c95_A Adenylate kinase 1; tra 96.8 0.00063 2.1E-08 58.5 3.2 28 101-128 7-34 (196)
254 1jal_A YCHF protein; nucleotid 96.8 0.00096 3.3E-08 64.6 4.7 41 103-143 2-48 (363)
255 1gvn_B Zeta; postsegregational 96.8 0.00095 3.2E-08 62.3 4.4 35 102-143 32-66 (287)
256 2wwf_A Thymidilate kinase, put 96.7 0.00071 2.4E-08 59.0 3.2 28 101-128 8-35 (212)
257 3ake_A Cytidylate kinase; CMP 96.7 0.00069 2.4E-08 58.8 3.1 24 105-128 4-27 (208)
258 1tev_A UMP-CMP kinase; ploop, 96.7 0.00087 3E-08 57.3 3.6 25 103-127 3-27 (196)
259 1xjc_A MOBB protein homolog; s 96.7 0.00072 2.5E-08 58.6 3.0 25 104-128 5-29 (169)
260 1nn5_A Similar to deoxythymidy 96.7 0.00077 2.6E-08 58.8 3.3 29 100-128 6-34 (215)
261 1fzq_A ADP-ribosylation factor 96.7 0.00093 3.2E-08 57.0 3.7 24 103-126 16-39 (181)
262 2ew1_A RAS-related protein RAB 96.7 0.0021 7.2E-08 56.2 6.0 23 105-127 28-50 (201)
263 4fcw_A Chaperone protein CLPB; 96.7 0.001 3.4E-08 61.6 4.1 31 104-139 48-78 (311)
264 3cbq_A GTP-binding protein REM 96.7 0.0012 4.2E-08 57.2 4.3 23 105-127 25-47 (195)
265 2bcg_Y Protein YP2, GTP-bindin 96.7 0.0024 8E-08 55.3 6.1 23 105-127 10-32 (206)
266 1nks_A Adenylate kinase; therm 96.7 0.0008 2.7E-08 57.4 3.0 24 105-128 3-26 (194)
267 3cf0_A Transitional endoplasmi 96.7 0.0011 3.7E-08 61.9 4.1 30 99-128 45-74 (301)
268 3k53_A Ferrous iron transport 96.7 0.00076 2.6E-08 61.9 3.0 24 105-128 5-28 (271)
269 2ged_A SR-beta, signal recogni 96.6 0.001 3.5E-08 56.8 3.3 24 104-127 49-72 (193)
270 2z0h_A DTMP kinase, thymidylat 96.6 0.00095 3.3E-08 57.4 3.1 24 105-128 2-25 (197)
271 1ko7_A HPR kinase/phosphatase; 96.6 0.0023 8E-08 60.7 6.0 45 93-143 135-183 (314)
272 1z2a_A RAS-related protein RAB 96.6 0.0011 3.8E-08 54.8 3.3 23 105-127 7-29 (168)
273 2vli_A Antibiotic resistance p 96.6 0.00076 2.6E-08 57.4 2.3 27 102-128 4-30 (183)
274 2dyk_A GTP-binding protein; GT 96.6 0.0013 4.3E-08 54.1 3.3 23 105-127 3-25 (161)
275 1kao_A RAP2A; GTP-binding prot 96.6 0.0013 4.4E-08 54.1 3.3 22 105-126 5-26 (167)
276 1c1y_A RAS-related protein RAP 96.5 0.0024 8.4E-08 52.5 5.1 22 105-126 5-26 (167)
277 1aky_A Adenylate kinase; ATP:A 96.5 0.0013 4.4E-08 58.1 3.5 27 102-128 3-29 (220)
278 2erx_A GTP-binding protein DI- 96.5 0.0013 4.5E-08 54.4 3.3 22 105-126 5-26 (172)
279 2ce2_X GTPase HRAS; signaling 96.5 0.0012 4E-08 54.1 3.0 23 105-127 5-27 (166)
280 2nzj_A GTP-binding protein REM 96.5 0.0013 4.4E-08 54.8 3.3 23 105-127 6-28 (175)
281 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0039 1.3E-07 52.3 6.3 21 105-125 7-27 (186)
282 2bwj_A Adenylate kinase 5; pho 96.5 0.0012 4E-08 56.9 3.0 29 100-128 9-37 (199)
283 3q72_A GTP-binding protein RAD 96.5 0.0011 3.6E-08 55.0 2.6 24 105-128 4-27 (166)
284 1u8z_A RAS-related protein RAL 96.5 0.0014 4.6E-08 54.0 3.3 23 105-127 6-28 (168)
285 1z0j_A RAB-22, RAS-related pro 96.5 0.0014 4.9E-08 54.2 3.3 23 105-127 8-30 (170)
286 1ek0_A Protein (GTP-binding pr 96.5 0.0024 8.1E-08 52.7 4.7 23 105-127 5-27 (170)
287 1z08_A RAS-related protein RAB 96.5 0.0014 4.9E-08 54.3 3.3 23 105-127 8-30 (170)
288 2lkc_A Translation initiation 96.5 0.0017 5.7E-08 54.4 3.8 25 102-126 7-31 (178)
289 3fb4_A Adenylate kinase; psych 96.5 0.0013 4.5E-08 57.7 3.2 24 105-128 2-25 (216)
290 1ky3_A GTP-binding protein YPT 96.5 0.0015 5E-08 54.7 3.3 23 105-127 10-32 (182)
291 3q85_A GTP-binding protein REM 96.5 0.0014 4.9E-08 54.3 3.2 23 105-127 4-26 (169)
292 3lxw_A GTPase IMAP family memb 96.5 0.0014 4.8E-08 59.5 3.3 25 104-128 22-46 (247)
293 1e6c_A Shikimate kinase; phosp 96.5 0.0012 4.1E-08 55.6 2.6 24 105-128 4-27 (173)
294 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0016 5.3E-08 54.5 3.3 23 105-127 9-31 (177)
295 1g16_A RAS-related protein SEC 96.5 0.0014 4.8E-08 54.2 3.0 23 105-127 5-27 (170)
296 3tw8_B RAS-related protein RAB 96.5 0.0014 4.7E-08 54.8 3.0 23 105-127 11-33 (181)
297 2pbr_A DTMP kinase, thymidylat 96.4 0.0015 5.1E-08 55.8 3.2 24 105-128 2-25 (195)
298 1zd8_A GTP:AMP phosphotransfer 96.4 0.0015 5E-08 58.2 3.2 27 101-127 5-31 (227)
299 1zuh_A Shikimate kinase; alpha 96.4 0.0016 5.6E-08 54.8 3.3 25 104-128 8-32 (168)
300 2cdn_A Adenylate kinase; phosp 96.4 0.0017 5.8E-08 56.5 3.5 27 102-128 19-45 (201)
301 2fn4_A P23, RAS-related protei 96.4 0.0015 5.1E-08 54.6 3.0 22 105-126 11-32 (181)
302 2pt5_A Shikimate kinase, SK; a 96.4 0.0017 5.7E-08 54.5 3.3 24 105-128 2-25 (168)
303 1svi_A GTP-binding protein YSX 96.4 0.0014 4.7E-08 56.0 2.8 24 103-126 23-46 (195)
304 3pqc_A Probable GTP-binding pr 96.4 0.0014 4.8E-08 55.6 2.8 24 104-127 24-47 (195)
305 3clv_A RAB5 protein, putative; 96.4 0.0017 5.8E-08 55.1 3.3 24 104-127 8-31 (208)
306 1ukz_A Uridylate kinase; trans 96.4 0.0019 6.5E-08 56.0 3.7 26 102-127 14-39 (203)
307 3dl0_A Adenylate kinase; phosp 96.4 0.0016 5.5E-08 57.2 3.2 23 105-127 2-24 (216)
308 3b1v_A Ferrous iron uptake tra 96.4 0.0016 5.4E-08 60.4 3.3 23 105-127 5-27 (272)
309 1r2q_A RAS-related protein RAB 96.4 0.0018 6.1E-08 53.4 3.3 22 105-126 8-29 (170)
310 2ce7_A Cell division protein F 96.4 0.0007 2.4E-08 67.9 0.8 34 93-128 41-74 (476)
311 1v5w_A DMC1, meiotic recombina 96.4 0.003 1E-07 60.3 5.2 28 99-126 118-145 (343)
312 2iyv_A Shikimate kinase, SK; t 96.4 0.0014 4.6E-08 56.1 2.5 25 104-128 3-27 (184)
313 1uj2_A Uridine-cytidine kinase 96.4 0.0017 5.8E-08 58.9 3.2 25 104-128 23-47 (252)
314 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0019 6.4E-08 54.5 3.3 23 105-127 6-28 (189)
315 1qf9_A UMP/CMP kinase, protein 96.4 0.0015 5.2E-08 55.7 2.7 26 103-128 6-31 (194)
316 3bc1_A RAS-related protein RAB 96.4 0.0019 6.5E-08 54.6 3.3 23 105-127 13-35 (195)
317 2w58_A DNAI, primosome compone 96.4 0.0025 8.4E-08 55.3 4.1 25 104-128 55-79 (202)
318 3bos_A Putative DNA replicatio 96.4 0.002 7E-08 56.6 3.6 27 102-128 51-77 (242)
319 3llm_A ATP-dependent RNA helic 96.3 0.0013 4.4E-08 59.0 2.3 27 99-125 72-98 (235)
320 1zak_A Adenylate kinase; ATP:A 96.3 0.0015 5.1E-08 57.8 2.6 27 102-128 4-30 (222)
321 1r8s_A ADP-ribosylation factor 96.3 0.002 7E-08 53.1 3.3 22 105-126 2-23 (164)
322 2oil_A CATX-8, RAS-related pro 96.3 0.002 6.9E-08 55.0 3.3 23 105-127 27-49 (193)
323 2cxx_A Probable GTP-binding pr 96.3 0.0017 5.7E-08 55.0 2.7 23 105-127 3-25 (190)
324 2hxs_A RAB-26, RAS-related pro 96.3 0.0022 7.4E-08 53.7 3.4 22 105-126 8-29 (178)
325 2grj_A Dephospho-COA kinase; T 96.3 0.0021 7E-08 56.5 3.2 25 103-127 12-36 (192)
326 2y8e_A RAB-protein 6, GH09086P 96.3 0.002 6.7E-08 53.8 3.0 22 105-126 16-37 (179)
327 1z0f_A RAB14, member RAS oncog 96.3 0.0022 7.5E-08 53.5 3.3 23 105-127 17-39 (179)
328 2g6b_A RAS-related protein RAB 96.3 0.0022 7.6E-08 53.7 3.3 23 105-127 12-34 (180)
329 2a9k_A RAS-related protein RAL 96.3 0.0022 7.6E-08 53.8 3.3 22 105-126 20-41 (187)
330 3t1o_A Gliding protein MGLA; G 96.3 0.0023 8E-08 54.2 3.4 24 105-128 16-39 (198)
331 1upt_A ARL1, ADP-ribosylation 96.3 0.0027 9.2E-08 52.6 3.7 23 103-125 7-29 (171)
332 3t5d_A Septin-7; GTP-binding p 96.3 0.0018 6E-08 59.6 2.7 23 105-127 10-32 (274)
333 3con_A GTPase NRAS; structural 96.3 0.0023 7.9E-08 54.4 3.3 23 105-127 23-45 (190)
334 1a7j_A Phosphoribulokinase; tr 96.2 0.0011 3.9E-08 61.9 1.4 27 102-128 4-30 (290)
335 2bov_A RAla, RAS-related prote 96.2 0.005 1.7E-07 52.8 5.4 23 105-127 16-38 (206)
336 2z43_A DNA repair and recombin 96.2 0.0036 1.2E-07 59.1 4.8 29 99-127 103-131 (324)
337 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0026 9E-08 58.1 3.8 27 102-128 3-29 (260)
338 2efe_B Small GTP-binding prote 96.2 0.0025 8.4E-08 53.5 3.3 23 105-127 14-36 (181)
339 2qby_A CDC6 homolog 1, cell di 96.2 0.0019 6.5E-08 60.9 2.9 27 102-128 44-70 (386)
340 3tlx_A Adenylate kinase 2; str 96.2 0.0028 9.5E-08 57.4 3.8 26 102-127 28-53 (243)
341 1wf3_A GTP-binding protein; GT 96.2 0.0023 8E-08 60.0 3.3 22 105-126 9-30 (301)
342 1moz_A ARL1, ADP-ribosylation 96.2 0.0018 6.2E-08 54.5 2.3 24 102-125 17-40 (183)
343 3kkq_A RAS-related protein M-R 96.2 0.0052 1.8E-07 51.7 5.2 22 105-126 20-41 (183)
344 1nrj_B SR-beta, signal recogni 96.2 0.0026 8.9E-08 55.5 3.3 24 104-127 13-36 (218)
345 2bme_A RAB4A, RAS-related prot 96.2 0.0025 8.4E-08 53.8 3.0 23 105-127 12-34 (186)
346 3tkl_A RAS-related protein RAB 96.2 0.0028 9.4E-08 54.0 3.3 23 105-127 18-40 (196)
347 1vg8_A RAS-related protein RAB 96.2 0.0028 9.5E-08 54.5 3.3 23 105-127 10-32 (207)
348 3iev_A GTP-binding protein ERA 96.2 0.0026 8.8E-08 59.8 3.3 23 105-127 12-34 (308)
349 2gf0_A GTP-binding protein DI- 96.1 0.005 1.7E-07 52.5 4.9 23 104-126 9-31 (199)
350 1fnn_A CDC6P, cell division co 96.1 0.0043 1.5E-07 58.8 4.9 24 105-128 46-69 (389)
351 1m7b_A RND3/RHOE small GTP-bin 96.1 0.0048 1.6E-07 52.3 4.7 22 105-126 9-30 (184)
352 2e87_A Hypothetical protein PH 96.1 0.0023 7.9E-08 61.3 2.9 26 102-127 166-191 (357)
353 2gf9_A RAS-related protein RAB 96.1 0.0029 9.8E-08 53.9 3.3 23 105-127 24-46 (189)
354 4dhe_A Probable GTP-binding pr 96.1 0.0016 5.4E-08 57.0 1.6 24 104-127 30-53 (223)
355 3iby_A Ferrous iron transport 96.1 0.0025 8.4E-08 58.4 3.0 23 105-127 3-25 (256)
356 2xtp_A GTPase IMAP family memb 96.1 0.0025 8.6E-08 57.7 3.0 24 104-127 23-46 (260)
357 3b9p_A CG5977-PA, isoform A; A 96.1 0.003 1E-07 58.2 3.5 27 102-128 53-79 (297)
358 2fg5_A RAB-22B, RAS-related pr 96.1 0.0028 9.6E-08 54.3 3.0 23 105-127 25-47 (192)
359 1jbk_A CLPB protein; beta barr 96.1 0.0033 1.1E-07 52.7 3.4 27 102-128 42-68 (195)
360 3t5g_A GTP-binding protein RHE 96.1 0.0056 1.9E-07 51.4 4.9 21 105-125 8-28 (181)
361 2xb4_A Adenylate kinase; ATP-b 96.1 0.003 1E-07 56.2 3.3 23 105-127 2-24 (223)
362 3bwd_D RAC-like GTP-binding pr 96.1 0.0035 1.2E-07 52.5 3.6 24 103-126 8-31 (182)
363 3oes_A GTPase rhebl1; small GT 96.1 0.0052 1.8E-07 53.0 4.8 26 103-128 24-49 (201)
364 2f6r_A COA synthase, bifunctio 96.1 0.0026 8.9E-08 59.0 3.0 23 103-125 75-97 (281)
365 1z06_A RAS-related protein RAB 96.1 0.0032 1.1E-07 53.6 3.3 22 105-126 22-43 (189)
366 2cjw_A GTP-binding protein GEM 96.0 0.0034 1.1E-07 54.2 3.3 22 105-126 8-29 (192)
367 3reg_A RHO-like small GTPase; 96.0 0.0064 2.2E-07 51.9 5.0 23 105-127 25-47 (194)
368 1zbd_A Rabphilin-3A; G protein 96.0 0.0034 1.2E-07 54.0 3.3 23 105-127 10-32 (203)
369 3be4_A Adenylate kinase; malar 96.0 0.003 1E-07 55.8 2.9 27 102-128 4-30 (217)
370 2a5j_A RAS-related protein RAB 96.0 0.0035 1.2E-07 53.5 3.3 23 105-127 23-45 (191)
371 1ksh_A ARF-like protein 2; sma 96.0 0.004 1.4E-07 52.6 3.6 27 101-127 16-42 (186)
372 2wsm_A Hydrogenase expression/ 96.0 0.0031 1.1E-07 55.2 3.0 25 104-128 31-55 (221)
373 2dby_A GTP-binding protein; GD 96.0 0.0029 9.9E-08 61.3 3.0 23 105-127 3-25 (368)
374 3dz8_A RAS-related protein RAB 96.0 0.0032 1.1E-07 53.8 3.0 23 105-127 25-47 (191)
375 1x3s_A RAS-related protein RAB 96.0 0.0036 1.2E-07 53.1 3.3 23 105-127 17-39 (195)
376 2h57_A ADP-ribosylation factor 96.0 0.0027 9.1E-08 54.2 2.4 24 104-127 22-45 (190)
377 4bas_A ADP-ribosylation factor 96.0 0.0033 1.1E-07 53.6 3.0 24 104-127 18-41 (199)
378 2qu8_A Putative nucleolar GTP- 96.0 0.0034 1.2E-07 55.5 3.2 23 104-126 30-52 (228)
379 2il1_A RAB12; G-protein, GDP, 96.0 0.0033 1.1E-07 54.0 2.9 23 105-127 28-50 (192)
380 3a1s_A Iron(II) transport prot 96.0 0.0036 1.2E-07 57.3 3.3 23 105-127 7-29 (258)
381 1e4v_A Adenylate kinase; trans 96.0 0.0033 1.1E-07 55.3 3.0 23 105-127 2-24 (214)
382 1zd9_A ADP-ribosylation factor 96.0 0.0039 1.3E-07 53.2 3.3 23 104-126 23-45 (188)
383 2atv_A RERG, RAS-like estrogen 96.0 0.0039 1.3E-07 53.5 3.3 23 104-126 29-51 (196)
384 1zj6_A ADP-ribosylation factor 96.0 0.0035 1.2E-07 53.3 3.0 23 103-125 16-38 (187)
385 3i8s_A Ferrous iron transport 96.0 0.0034 1.2E-07 57.9 3.1 23 105-127 5-27 (274)
386 3cph_A RAS-related protein SEC 95.9 0.0039 1.3E-07 53.9 3.3 24 103-126 20-43 (213)
387 2p5s_A RAS and EF-hand domain 95.9 0.004 1.4E-07 53.6 3.3 26 102-127 27-52 (199)
388 1jwy_B Dynamin A GTPase domain 95.9 0.0034 1.1E-07 58.3 3.0 23 105-127 26-48 (315)
389 3d3q_A TRNA delta(2)-isopenten 95.9 0.0038 1.3E-07 59.9 3.3 25 104-128 8-32 (340)
390 2h17_A ADP-ribosylation factor 95.9 0.0032 1.1E-07 53.3 2.5 22 104-125 22-43 (181)
391 1l8q_A Chromosomal replication 95.9 0.0032 1.1E-07 58.9 2.7 25 104-128 38-62 (324)
392 2h92_A Cytidylate kinase; ross 95.9 0.0036 1.2E-07 55.0 2.9 25 103-127 3-27 (219)
393 2iwr_A Centaurin gamma 1; ANK 95.9 0.0032 1.1E-07 52.8 2.5 22 105-126 9-30 (178)
394 2o52_A RAS-related protein RAB 95.9 0.0038 1.3E-07 54.0 2.9 22 105-126 27-48 (200)
395 2fv8_A H6, RHO-related GTP-bin 95.9 0.004 1.4E-07 54.1 3.0 23 105-127 27-49 (207)
396 1ltq_A Polynucleotide kinase; 95.9 0.0043 1.5E-07 57.3 3.5 22 104-125 3-24 (301)
397 1gwn_A RHO-related GTP-binding 95.9 0.0073 2.5E-07 52.7 4.7 23 105-127 30-52 (205)
398 3c5c_A RAS-like protein 12; GD 95.9 0.0047 1.6E-07 52.8 3.3 22 105-126 23-44 (187)
399 2f7s_A C25KG, RAS-related prot 95.8 0.0045 1.5E-07 53.9 3.3 22 105-126 27-48 (217)
400 1ak2_A Adenylate kinase isoenz 95.8 0.005 1.7E-07 55.0 3.6 27 102-128 15-41 (233)
401 3a8t_A Adenylate isopentenyltr 95.8 0.0052 1.8E-07 58.9 3.9 27 102-128 39-65 (339)
402 2fh5_B SR-beta, signal recogni 95.8 0.0046 1.6E-07 53.7 3.3 24 104-127 8-31 (214)
403 2q3h_A RAS homolog gene family 95.8 0.0046 1.6E-07 53.0 3.2 25 102-126 19-43 (201)
404 3h4m_A Proteasome-activating n 95.8 0.0048 1.6E-07 56.3 3.5 27 102-128 50-76 (285)
405 3def_A T7I23.11 protein; chlor 95.8 0.0044 1.5E-07 56.5 3.1 23 105-127 38-60 (262)
406 2qmh_A HPR kinase/phosphorylas 95.8 0.0074 2.5E-07 53.7 4.4 29 96-125 28-56 (205)
407 2fu5_C RAS-related protein RAB 95.8 0.0031 1.1E-07 53.1 1.9 22 105-126 10-31 (183)
408 1h65_A Chloroplast outer envel 95.8 0.0044 1.5E-07 56.7 3.0 23 105-127 41-63 (270)
409 4edh_A DTMP kinase, thymidylat 95.8 0.0054 1.8E-07 54.7 3.4 28 101-128 4-31 (213)
410 2j1l_A RHO-related GTP-binding 95.8 0.0046 1.6E-07 54.1 3.0 22 105-126 36-57 (214)
411 2gco_A H9, RHO-related GTP-bin 95.7 0.0048 1.7E-07 53.3 3.0 22 105-126 27-48 (201)
412 2p65_A Hypothetical protein PF 95.7 0.0047 1.6E-07 51.8 2.7 26 103-128 43-68 (187)
413 2aka_B Dynamin-1; fusion prote 95.7 0.0044 1.5E-07 56.9 2.8 23 105-127 28-50 (299)
414 3v9p_A DTMP kinase, thymidylat 95.7 0.0043 1.5E-07 56.1 2.6 29 100-128 22-50 (227)
415 2atx_A Small GTP binding prote 95.7 0.0053 1.8E-07 52.4 3.0 22 105-126 20-41 (194)
416 3llu_A RAS-related GTP-binding 95.7 0.0051 1.7E-07 52.9 2.9 24 105-128 22-45 (196)
417 3cnl_A YLQF, putative uncharac 95.7 0.0051 1.8E-07 56.6 3.1 25 104-128 100-124 (262)
418 3zvl_A Bifunctional polynucleo 95.7 0.0063 2.1E-07 59.6 3.9 29 99-127 254-282 (416)
419 2hf9_A Probable hydrogenase ni 95.7 0.0054 1.9E-07 53.8 3.0 25 104-128 39-63 (226)
420 3lv8_A DTMP kinase, thymidylat 95.6 0.0054 1.9E-07 55.7 3.0 27 102-128 26-52 (236)
421 4djt_A GTP-binding nuclear pro 95.6 0.0029 1E-07 55.2 1.1 22 105-126 13-34 (218)
422 2ocp_A DGK, deoxyguanosine kin 95.6 0.0066 2.3E-07 54.4 3.5 27 102-128 1-27 (241)
423 3crm_A TRNA delta(2)-isopenten 95.6 0.006 2E-07 58.1 3.3 25 104-128 6-30 (323)
424 3exa_A TRNA delta(2)-isopenten 95.6 0.0071 2.4E-07 57.5 3.7 26 103-128 3-28 (322)
425 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.0071 2.4E-07 54.2 3.6 25 104-128 40-64 (262)
426 1njg_A DNA polymerase III subu 95.6 0.0061 2.1E-07 52.8 3.1 24 105-128 47-70 (250)
427 2b6h_A ADP-ribosylation factor 95.6 0.0063 2.1E-07 52.3 3.1 24 102-125 28-51 (192)
428 1sky_E F1-ATPase, F1-ATP synth 95.6 0.0048 1.6E-07 61.6 2.6 31 98-128 146-176 (473)
429 1p5z_B DCK, deoxycytidine kina 95.6 0.0051 1.7E-07 56.0 2.6 29 100-128 21-49 (263)
430 2g3y_A GTP-binding protein GEM 95.5 0.0069 2.4E-07 53.6 3.3 22 105-126 39-60 (211)
431 3umf_A Adenylate kinase; rossm 95.5 0.0064 2.2E-07 54.6 2.9 32 97-128 23-54 (217)
432 2x77_A ADP-ribosylation factor 95.5 0.0045 1.5E-07 52.6 1.9 24 102-125 21-44 (189)
433 4dcu_A GTP-binding protein ENG 95.5 0.0055 1.9E-07 60.6 2.7 23 105-127 25-47 (456)
434 3ld9_A DTMP kinase, thymidylat 95.5 0.0078 2.7E-07 54.2 3.5 28 101-128 19-46 (223)
435 2hup_A RAS-related protein RAB 95.5 0.0068 2.3E-07 52.5 3.0 22 105-126 31-52 (201)
436 1ypw_A Transitional endoplasmi 95.5 0.0023 8E-08 68.1 0.0 33 96-128 504-536 (806)
437 4tmk_A Protein (thymidylate ki 95.5 0.0068 2.3E-07 54.1 3.0 27 102-128 2-28 (213)
438 2yc2_C IFT27, small RAB-relate 95.5 0.0032 1.1E-07 54.0 0.8 22 105-126 22-43 (208)
439 4gzl_A RAS-related C3 botulinu 95.5 0.007 2.4E-07 52.5 3.0 23 103-125 30-52 (204)
440 2r62_A Cell division protease 95.5 0.0018 6.2E-08 58.7 -0.8 30 97-128 40-69 (268)
441 3cpj_B GTP-binding protein YPT 95.5 0.0078 2.7E-07 52.9 3.4 23 105-127 15-37 (223)
442 3tmk_A Thymidylate kinase; pho 95.5 0.0076 2.6E-07 54.0 3.3 28 101-128 3-30 (216)
443 2i1q_A DNA repair and recombin 95.4 0.0081 2.8E-07 56.3 3.6 27 99-125 94-120 (322)
444 3q3j_B RHO-related GTP-binding 95.4 0.0084 2.9E-07 52.5 3.3 23 104-126 28-50 (214)
445 1u94_A RECA protein, recombina 95.4 0.0092 3.2E-07 57.4 3.8 29 100-128 60-88 (356)
446 2j0v_A RAC-like GTP-binding pr 95.3 0.0088 3E-07 51.8 3.0 23 104-126 10-32 (212)
447 3n70_A Transport activator; si 95.3 0.0094 3.2E-07 49.2 3.0 27 102-128 23-49 (145)
448 2zts_A Putative uncharacterize 95.2 0.012 4.1E-07 52.0 3.8 25 100-124 27-51 (251)
449 3tqf_A HPR(Ser) kinase; transf 95.2 0.017 5.9E-07 50.2 4.5 29 96-125 10-38 (181)
450 3foz_A TRNA delta(2)-isopenten 95.1 0.013 4.3E-07 55.6 3.8 26 103-128 10-35 (316)
451 1sxj_D Activator 1 41 kDa subu 95.1 0.0083 2.9E-07 56.2 2.6 25 104-128 59-83 (353)
452 3sr0_A Adenylate kinase; phosp 95.1 0.011 3.7E-07 52.5 3.1 24 105-128 2-25 (206)
453 1puj_A YLQF, conserved hypothe 95.1 0.012 4E-07 54.7 3.5 26 102-127 119-144 (282)
454 2z4s_A Chromosomal replication 95.1 0.009 3.1E-07 59.0 2.8 26 103-128 130-155 (440)
455 3syl_A Protein CBBX; photosynt 95.1 0.011 3.8E-07 54.4 3.3 27 102-128 66-92 (309)
456 2v3c_C SRP54, signal recogniti 95.1 0.0042 1.4E-07 61.5 0.3 37 104-145 100-136 (432)
457 3dm5_A SRP54, signal recogniti 95.1 0.015 5.2E-07 57.6 4.3 27 102-128 99-125 (443)
458 2chg_A Replication factor C sm 95.0 0.012 4E-07 50.5 3.0 23 106-128 41-63 (226)
459 3p32_A Probable GTPase RV1496/ 95.0 0.018 6.3E-07 55.0 4.4 27 102-128 78-104 (355)
460 3gj0_A GTP-binding nuclear pro 94.9 0.0096 3.3E-07 52.1 2.0 23 105-127 17-40 (221)
461 3r7w_A Gtpase1, GTP-binding pr 94.8 0.014 4.9E-07 54.5 3.3 24 103-126 3-26 (307)
462 4dkx_A RAS-related protein RAB 94.8 0.023 7.9E-07 50.5 4.4 20 105-124 15-34 (216)
463 3uk6_A RUVB-like 2; hexameric 94.8 0.02 6.9E-07 54.1 4.2 27 102-128 69-95 (368)
464 3hws_A ATP-dependent CLP prote 94.8 0.014 4.8E-07 55.6 3.1 25 104-128 52-76 (363)
465 2hjg_A GTP-binding protein ENG 94.7 0.013 4.4E-07 57.6 2.8 23 105-127 5-27 (436)
466 2v1u_A Cell division control p 94.7 0.013 4.3E-07 55.3 2.6 27 102-128 43-69 (387)
467 3th5_A RAS-related C3 botulinu 93.7 0.0054 1.8E-07 52.9 0.0 22 104-125 31-52 (204)
468 3ec1_A YQEH GTPase; atnos1, at 94.7 0.014 4.8E-07 56.3 2.9 26 102-127 161-186 (369)
469 3l0i_B RAS-related protein RAB 94.7 0.0034 1.2E-07 54.1 -1.3 21 105-125 35-55 (199)
470 4hlc_A DTMP kinase, thymidylat 94.7 0.018 6.3E-07 50.8 3.5 26 103-128 2-27 (205)
471 3eph_A TRNA isopentenyltransfe 94.7 0.017 5.7E-07 56.7 3.4 25 104-128 3-27 (409)
472 1lnz_A SPO0B-associated GTP-bi 94.7 0.017 5.9E-07 55.2 3.5 31 96-126 151-181 (342)
473 2x2e_A Dynamin-1; nitration, h 94.7 0.011 3.8E-07 56.3 2.1 22 105-126 33-54 (353)
474 1ofh_A ATP-dependent HSL prote 94.7 0.015 5.2E-07 53.2 3.0 25 104-128 51-75 (310)
475 3geh_A MNME, tRNA modification 94.7 0.011 3.9E-07 58.8 2.2 27 101-127 222-248 (462)
476 1d2n_A N-ethylmaleimide-sensit 94.6 0.017 5.9E-07 52.4 3.2 25 104-128 65-89 (272)
477 2orw_A Thymidine kinase; TMTK, 94.6 0.023 7.9E-07 49.2 3.8 27 102-128 2-29 (184)
478 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.019 6.5E-07 54.1 3.4 25 103-127 45-69 (322)
479 3gmt_A Adenylate kinase; ssgci 94.5 0.02 6.8E-07 51.9 3.3 25 104-128 9-33 (230)
480 1g8f_A Sulfate adenylyltransfe 94.5 0.018 6.2E-07 58.1 3.3 28 101-128 393-420 (511)
481 1tue_A Replication protein E1; 94.5 0.02 6.7E-07 51.2 3.1 29 100-128 55-83 (212)
482 1wxq_A GTP-binding protein; st 94.5 0.017 5.7E-07 56.4 3.0 23 105-127 2-24 (397)
483 1m8p_A Sulfate adenylyltransfe 94.5 0.021 7.1E-07 58.4 3.6 28 101-128 394-421 (573)
484 3h2y_A GTPase family protein; 94.4 0.015 5.2E-07 56.1 2.4 26 102-127 159-184 (368)
485 3t15_A Ribulose bisphosphate c 94.4 0.021 7.2E-07 53.0 3.2 24 105-128 38-61 (293)
486 2bjv_A PSP operon transcriptio 94.4 0.029 1E-06 50.6 4.1 26 103-128 29-54 (265)
487 3eie_A Vacuolar protein sortin 94.3 0.025 8.6E-07 53.0 3.6 25 104-128 52-76 (322)
488 2qpt_A EH domain-containing pr 94.2 0.019 6.6E-07 58.4 2.8 24 104-127 66-89 (550)
489 2qgz_A Helicase loader, putati 94.2 0.026 9E-07 52.9 3.5 26 103-128 152-177 (308)
490 3d8b_A Fidgetin-like protein 1 94.2 0.027 9.2E-07 53.8 3.6 27 102-128 116-142 (357)
491 1xp8_A RECA protein, recombina 94.2 0.026 8.8E-07 54.5 3.5 30 99-128 70-99 (366)
492 2vhj_A Ntpase P4, P4; non- hyd 94.2 0.026 8.8E-07 53.8 3.3 28 99-126 119-146 (331)
493 3pfi_A Holliday junction ATP-d 94.1 0.024 8.2E-07 53.0 3.0 23 106-128 58-80 (338)
494 1um8_A ATP-dependent CLP prote 94.1 0.024 8.2E-07 54.2 3.1 25 104-128 73-97 (376)
495 2q6t_A DNAB replication FORK h 94.1 0.025 8.5E-07 55.7 3.2 36 93-128 190-225 (444)
496 1x6v_B Bifunctional 3'-phospho 94.1 0.027 9.3E-07 58.2 3.6 27 102-128 51-77 (630)
497 1f5n_A Interferon-induced guan 94.1 0.021 7.1E-07 58.7 2.7 25 103-127 38-62 (592)
498 2qby_B CDC6 homolog 3, cell di 94.0 0.029 9.9E-07 53.0 3.4 25 104-128 46-70 (384)
499 4b4t_J 26S protease regulatory 94.0 0.029 9.8E-07 55.0 3.4 29 98-128 179-207 (405)
500 3sjy_A Translation initiation 94.0 0.027 9.2E-07 54.7 3.2 24 105-128 10-33 (403)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.9e-46 Score=364.65 Aligned_cols=217 Identities=14% Similarity=0.153 Sum_probs=174.1
Q ss_pred CCCcEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 68 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.+++|+++||+++|+.+ ..+.+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~a---L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i 92 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQEL 92 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEeEEEEeCCCCCCeEE---EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 35789999999999643 22456 566999999999999999999999999999999999 9999999999998
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
...... .....|+.++|++|+...+..+ ++.+|+.++... ...++.+.++++.++|+.+||.+
T Consensus 93 ~~~~~~-~~~~~r~~Ig~v~Q~~~l~~~~----------TV~env~~~~~~-~~~~~~~~~~~v~~lL~~vgL~~----- 155 (366)
T 3tui_C 93 TTLSES-ELTKARRQIGMIFQHFNLLSSR----------TVFGNVALPLEL-DNTPKDEVKRRVTELLSLVGLGD----- 155 (366)
T ss_dssp SSCCHH-HHHHHHTTEEEECSSCCCCTTS----------CHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTCGG-----
T ss_pred CcCCHH-HHHHHhCcEEEEeCCCccCCCC----------CHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCch-----
Confidence 622111 1111134567777765544333 444555544332 23456677888999999999987
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
+++++|.+|||||||||+||||| ||||++||. |+|||+|||
T Consensus 156 ------------~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 156 ------------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp ------------GTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
+.+..+|||+++ |++|++++.|++++++.+|.+++++.++..
T Consensus 224 l~~~~~~aDrv~v-l~~G~iv~~g~~~ev~~~p~~~~~~~~~~~ 266 (366)
T 3tui_C 224 MDVVKRICDCVAV-ISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266 (366)
T ss_dssp HHHHHHHCSEEEE-EETTEEEECCBHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCcHHHHHHHhh
Confidence 578899999975 999999999999999999999988887765
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9.5e-45 Score=355.84 Aligned_cols=206 Identities=12% Similarity=0.161 Sum_probs=170.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+. ..+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~yg~---~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~- 69 (381)
T 3rlf_A 2 ASVQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND- 69 (381)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred CEEEEEeEEEEECC---EEE---EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCC-
Confidence 46999999999975 345 666999999999999999999999999999999999 999999999999862
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
....++.++|++|+...+..+ ++.+|+.++... ...++.+.++++.++++.++|.+
T Consensus 70 -----~~~~~r~ig~VfQ~~~l~p~l----------tV~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~-------- 125 (381)
T 3rlf_A 70 -----TPPAERGVGMVFQSYALYPHL----------SVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAH-------- 125 (381)
T ss_dssp -----CCGGGSCEEEECTTCCCCTTS----------CHHHHHTHHHHH-TTCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred -----CCHHHCCEEEEecCCcCCCCC----------CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCch--------
Confidence 111223456666665544333 455555555432 23456777889999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+|||||||||+||||| ||||++||. |+|+|+||| ++
T Consensus 126 ---------~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 126 ---------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp ---------GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred ---------hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+..+||||++ |++|++++.|++++++..|.+.++..++.
T Consensus 197 a~~~aDri~v-l~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 197 AMTLADKIVV-LDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHhCCEEEE-EECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 8899999975 99999999999999999988777665554
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.5e-45 Score=355.76 Aligned_cols=208 Identities=13% Similarity=0.210 Sum_probs=167.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+. ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~i~~ls~~y~~---~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~ 71 (359)
T 3fvq_A 3 AALHIGHLSKSFQN---TPV---LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSK 71 (359)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESS
T ss_pred cEEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 37999999999975 345 666999999999999999999999999999999999 9999999999987310
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. ......++.++|++|+.. +++. ++.+|+.++... +..++.+.++++.++++.++|.+
T Consensus 72 ~--~~~~~~~r~ig~vfQ~~~-----------l~p~ltV~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~------- 130 (359)
T 3fvq_A 72 N--TNLPVRERRLGYLVQEGV-----------LFPHLTVYRNIAYGLGN-GKGRTAQERQRIEAMLELTGISE------- 130 (359)
T ss_dssp S--CBCCGGGSCCEEECTTCC-----------CCTTSCHHHHHHTTSTT-SSCCSHHHHHHHHHHHHHHTCGG-------
T ss_pred c--cccchhhCCEEEEeCCCc-----------CCCCCCHHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCCch-------
Confidence 0 011112334556655544 3333 566777766543 23345677788999999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
+++++|.+|||||||||+||||| ||||++||. |+|+|+||| +
T Consensus 131 ----------~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 131 ----------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56999999999999999999999 999999984 899999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
++..+||||++ |++|+++..|++++++..|...+...++
T Consensus 201 ea~~~aDri~v-l~~G~i~~~g~~~el~~~p~~~~~a~~~ 239 (359)
T 3fvq_A 201 EALQYADRIAV-MKQGRILQTASPHELYRQPADLDAALFI 239 (359)
T ss_dssp HHHHHCSEEEE-EETTEEEEEECHHHHHHSCSCHHHHHHH
T ss_pred HHHHHCCEEEE-EECCEEEEEeCHHHHHhCcccHHHHHhc
Confidence 78899999975 9999999999999999988765544443
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.9e-44 Score=340.19 Aligned_cols=201 Identities=13% Similarity=0.202 Sum_probs=158.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+.+.. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++...
T Consensus 6 ~~l~i~~ls~~y~~~~~--~---L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~~ 75 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTH--A---LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDYS 75 (275)
T ss_dssp EEEEEEEEEEECTTSCE--E---EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCCS
T ss_pred cEEEEEEEEEEECCCCe--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCcc
Confidence 57999999999975433 4 777999999999999999999999999999999999 9999999999997410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.. .....++.++|++|+.... ++..++.+|+.++... ...+..+..+++.++++.++|.+
T Consensus 76 -~~-~~~~~~~~ig~v~Q~~~~~---------~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~-------- 135 (275)
T 3gfo_A 76 -RK-GIMKLRESIGIVFQDPDNQ---------LFSASVYQDVSFGAVN-MKLPEDEIRKRVDNALKRTGIEH-------- 135 (275)
T ss_dssp -HH-HHHHHHHSEEEECSSGGGT---------CCSSBHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred -cc-cHHHHhCcEEEEEcCcccc---------cccCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCch--------
Confidence 00 0011123456666654211 1112444555554432 23345677788999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+.++++.+||||||||++||||| ||||++||. |+|||+||| +.
T Consensus 136 ---------~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 136 ---------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp ---------GTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred ---------hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 56899999999999999999999 999999984 889999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+..+|||+++ |++|++++.|++++++..
T Consensus 207 ~~~~~drv~~-l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 207 VPLYCDNVFV-MKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp GGGGCSEEEE-EETTEEEEEECHHHHTHH
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHhcC
Confidence 8889999975 999999999999998764
No 5
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.8e-43 Score=343.88 Aligned_cols=205 Identities=15% Similarity=0.226 Sum_probs=165.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+. . .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~y~~-~--~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 69 (362)
T 2it1_A 2 VEIKLENIVKKFGN-F--TA---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTE- 69 (362)
T ss_dssp CCEEEEEEEEESSS-S--EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred cEEEEEeEEEEECC-E--EE---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCc-
Confidence 36999999999964 2 34 677999999999999999999999999999999999 999999999999852
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
....++.++|++|+...+..+ ++.+|+.++... ...++.+.++++.++++.++|.+
T Consensus 70 -----~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~-------- 125 (362)
T 2it1_A 70 -----LPPKDRNVGLVFQNWALYPHM----------TVYKNIAFPLEL-RKAPREEIDKKVREVAKMLHIDK-------- 125 (362)
T ss_dssp -----SCGGGTTEEEECTTCCCCTTS----------CHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCTT--------
T ss_pred -----CCHhHCcEEEEecCcccCCCC----------CHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCch--------
Confidence 111124567777766554443 344444444322 12345566788999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 126 ---------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 126 ---------LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp ---------CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+..+|||+++ |++|++++.|++++++..|...++..++
T Consensus 197 a~~~adri~v-l~~G~i~~~g~~~~~~~~p~~~~~~~~~ 234 (362)
T 2it1_A 197 ALAMADRIAV-IREGEILQVGTPDEVYYKPKYKFVGGFL 234 (362)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHHc
Confidence 8899999975 9999999999999999888765544444
No 6
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=9.5e-44 Score=346.36 Aligned_cols=212 Identities=14% Similarity=0.211 Sum_probs=166.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+.. ...+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~i~~l~~~y~~~-~~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 2 VRIIVKNVSKVFKKG-KVVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVASN 72 (353)
T ss_dssp CCEEEEEEEEEEGGG-TEEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEET
T ss_pred cEEEEEeEEEEECCE-eeee---EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECccc
Confidence 469999999999642 2004 667999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. .......++.++|++|+...+..+ ++.+|+.++... ...+..+.++++.++++.++|.+
T Consensus 73 ~-~~~~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~-------- 132 (353)
T 1oxx_K 73 G-KLIVPPEDRKIGMVFQTWALYPNL----------TAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHH-------- 132 (353)
T ss_dssp T-EESSCGGGSCEEEEETTSCCCTTS----------CHHHHHHGGGTT-SSCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred c-cccCChhhCCEEEEeCCCccCCCC----------CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCch--------
Confidence 0 000111133456666655443322 555666665432 23345566788999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 133 ---------~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 133 ---------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+..+|||+++ |++|+++..|++++++..|...++..++
T Consensus 204 ~~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~ 241 (353)
T 1oxx_K 204 IFAIADRVGV-LVKGKLVQVGKPEDLYDNPVSIQVASLI 241 (353)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSSHHHHHHH
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCcccHHHHHhc
Confidence 8899999975 9999999999999999888766554444
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.6e-43 Score=343.13 Aligned_cols=207 Identities=14% Similarity=0.182 Sum_probs=167.4
Q ss_pred CCCcEEEeeeEEEe-CCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 68 IGSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 68 ~~~~l~i~nl~~~y-~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
..++|+++||+++| +. . .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 11 ~~~~l~~~~l~~~y~g~-~--~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i 79 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG-A--RS---VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRV 79 (355)
T ss_dssp CCEEEEEEEEEECCTTS-T--TC---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEEEEEEEcCC-C--EE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEEC
Confidence 45789999999999 54 2 23 777999999999999999999999999999999999 9999999999998
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
.. ....++.++|++|+...+..+ ++.+|+.++... ...++.+.++++.++++.++|.+
T Consensus 80 ~~------~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~----- 137 (355)
T 1z47_A 80 TD------LPPQKRNVGLVFQNYALFQHM----------TVYDNVSFGLRE-KRVPKDEMDARVRELLRFMRLES----- 137 (355)
T ss_dssp TT------CCGGGSSEEEECGGGCCCTTS----------CHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCGG-----
T ss_pred Cc------CChhhCcEEEEecCcccCCCC----------CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChh-----
Confidence 52 111234566777665544433 344454444332 12345566788999999999987
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+|||
T Consensus 138 ------------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 138 ------------YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp ------------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred ------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+++..+|||+++ |++|+++..|++++++..|...++..++
T Consensus 206 ~~~a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~ 246 (355)
T 1z47_A 206 QEEALEVADRVLV-LHEGNVEQFGTPEEVYEKPGTLFVASFI 246 (355)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHHHHSCSSHHHHHHT
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHhc
Confidence 578899999975 9999999999999999887766544444
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-43 Score=332.48 Aligned_cols=212 Identities=17% Similarity=0.137 Sum_probs=162.1
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC-
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG- 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~- 148 (347)
++|+++||+++|+. ..+ |+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV 73 (262)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred ceEEEeeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccc
Confidence 47999999999964 234 667999999999999999999999999999999999 999999999998741
Q ss_pred ----C----ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC
Q 019048 149 ----T----YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (347)
Q Consensus 149 ----~----~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 220 (347)
. .........++.++|++|+...+..+ ++.+|+.++.......+....++++.++++.+||.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~l----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 143 (262)
T 1b0u_A 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM----------TVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 143 (262)
T ss_dssp ECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTS----------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccccccccccChhhHHHHhcceEEEecCcccCCCC----------cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 0 00000000123456777665444333 33444443221111223445567889999999998
Q ss_pred cccccccceeeeeechhhh-hccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeE
Q 019048 221 PSVIRKVNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 274 (347)
Q Consensus 221 ~~~~~~~~~~~~vvd~~~~-~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~ti 274 (347)
+ . +++++.+||||||||++||||| ||||++||. |+||
T Consensus 144 ~-----------------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 144 E-----------------RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp H-----------------HHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred c-----------------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 7 5 6899999999999999999999 999999984 8999
Q ss_pred EEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 275 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 275 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
|+||| +.+..+||++++ |++|++++.|++++++..+.+++++.++
T Consensus 207 i~vtHd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 253 (262)
T 1b0u_A 207 VVVTHEMGFARHVSSHVIF-LHQGKIEEEGDPEQVFGNPQSPRLQQFL 253 (262)
T ss_dssp EEECSCHHHHHHHCSEEEE-EETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred EEEeCCHHHHHHhCCEEEE-EECCEEEEeCCHHHHHhCcchHHHHHHH
Confidence 99999 577889999975 9999999999999998876655544443
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.4e-43 Score=332.23 Aligned_cols=207 Identities=14% Similarity=0.194 Sum_probs=160.1
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. .
T Consensus 23 ~~l~i~~l~~~y~~---~~v---L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~-~ 90 (263)
T 2olj_A 23 QMIDVHQLKKSFGS---LEV---LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLK-A 90 (263)
T ss_dssp CSEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESS-S
T ss_pred heEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECC-C
Confidence 47999999999964 234 677999999999999999999999999999999999 99999999999874 1
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
... .....++.++|++|+...+..+ ++.+|+.++.............+++.++++.++|.+
T Consensus 91 ~~~-~~~~~~~~i~~v~Q~~~l~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------- 151 (263)
T 2olj_A 91 KDT-NLNKVREEVGMVFQRFNLFPHM----------TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-------- 151 (263)
T ss_dssp TTC-CHHHHHHHEEEECSSCCCCTTS----------CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred ccc-cHHHHhCcEEEEeCCCcCCCCC----------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch--------
Confidence 000 0001123456777765444332 333444432211112234455677889999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 152 ---------~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 152 ---------KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 45899999999999999999999 999999984 899999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 317 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~ 317 (347)
..+||++++ |++|++++.|++++++..+..++++
T Consensus 223 ~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~ 256 (263)
T 2olj_A 223 REVGDRVLF-MDGGYIIEEGKPEDLFDRPQHERTK 256 (263)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCCSHHHH
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHHhCcccHHHH
Confidence 889999975 9999999999999998776554433
No 10
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.1e-43 Score=345.85 Aligned_cols=205 Identities=15% Similarity=0.198 Sum_probs=163.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
|.+|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 M~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 9 MVEVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 77 (372)
T ss_dssp CCCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred eeeEEEEEEEEEECC---EEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCC
Confidence 456999999999964 334 666999999999999999999999999999999999 999999999999851
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
....++.++|++| ++.+++. ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 78 ------~~~~~r~ig~v~Q-----------~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------ 133 (372)
T 1v43_A 78 ------LPPKDRNISMVFQ-----------SYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------ 133 (372)
T ss_dssp ------SCGGGGTEEEEEC-----------------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG------
T ss_pred ------CChhhCcEEEEec-----------CcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 1111223455554 4444443 6667777665422 3345566788999999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+|||
T Consensus 134 -----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 134 -----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp -----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+++..+|||+++ |++|+++..|++++++..|...++..++
T Consensus 203 ~~a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~a~~~ 242 (372)
T 1v43_A 203 VEAMTMGDRIAV-MNRGQLLQIGSPTEVYLRPNSVFVATFI 242 (372)
T ss_dssp HHHHHHCSEEEE-EETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred HHHHHhCCEEEE-EECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 578899999975 9999999999999999887765544444
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-43 Score=343.41 Aligned_cols=205 Identities=13% Similarity=0.201 Sum_probs=164.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 69 (359)
T 2yyz_A 2 PSIRVVNLKKYFGK---VKA---VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVND- 69 (359)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred cEEEEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCC-
Confidence 36999999999964 344 666999999999999999999999999999999999 999999999999852
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
....++.++|++|+...+..+ ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 70 -----~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 125 (359)
T 2yyz_A 70 -----IPPKYREVGMVFQNYALYPHM----------TVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDN-------- 125 (359)
T ss_dssp -----SCGGGTTEEEECSSCCCCTTS----------CHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGG--------
T ss_pred -----CChhhCcEEEEecCcccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 111123456666665444332 4556666554321 2223445678899999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 126 ---------~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 126 ---------LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+..+|||+++ |++|+++..|++++++..|...++..++
T Consensus 197 ~~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~ 234 (359)
T 2yyz_A 197 AMTMASRIAV-FNQGKLVQYGTPDEVYDSPKNMFVASFI 234 (359)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 8899999975 9999999999999999888765544444
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.1e-43 Score=324.59 Aligned_cols=203 Identities=18% Similarity=0.148 Sum_probs=152.7
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+|+++||+++|+.+. ...+ |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~---L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEEEEEEeCCCCcceee---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence 589999999996432 2345 666999999999999999999999999999999999 9999999999998621
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc--cCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.........++.++|++|+...+..+ ++.+|+.++.... ......+..+++.++++.+++.+.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----- 137 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIPLL----------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----- 137 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCTTS----------CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG-----
T ss_pred CHHHHHHHhhccEEEEecCCccCCCC----------cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh-----
Confidence 11111111122356666665443332 4445555443211 123455667788999999999862
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-~ 280 (347)
.+++++.+||||||||++||||| ||||++||. |+|||+||| -
T Consensus 138 -----------~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 138 -----------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp -----------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 23889999999999999999999 999999984 899999999 3
Q ss_pred HHHhcccEEEEEeeCCeEeecCCccccc
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
.+..+|||+++ |++|++++.++++++.
T Consensus 207 ~~~~~~d~i~~-l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 207 NVARFGERIIY-LKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHTTSSEEEE-EETTEEEEEEECC---
T ss_pred HHHHhCCEEEE-EECCEEEEEcChhhhc
Confidence 45689999975 9999999998877653
No 13
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.6e-43 Score=341.55 Aligned_cols=201 Identities=13% Similarity=0.190 Sum_probs=162.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||+++|+.. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~--~-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~-- 66 (348)
T 3d31_A 1 MIEIESLSRKWKNF--S-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (348)
T ss_dssp CEEEEEEEEECSSC--E-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEECCE--E-----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCC--
Confidence 58999999999752 3 777999999999999999999999999999999999 999999999999752
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
....++.++|++|+...+..+ ++.+|+.++.... ..++. +++.++++.++|.+
T Consensus 67 ----~~~~~r~ig~v~Q~~~l~~~l----------tv~enl~~~~~~~-~~~~~---~~v~~~l~~~~L~~--------- 119 (348)
T 3d31_A 67 ----LSPEKHDIAFVYQNYSLFPHM----------NVKKNLEFGMRMK-KIKDP---KRVLDTARDLKIEH--------- 119 (348)
T ss_dssp ----SCHHHHTCEEECTTCCCCTTS----------CHHHHHHHHHHHH-CCCCH---HHHHHHHHHTTCTT---------
T ss_pred ----CchhhCcEEEEecCcccCCCC----------CHHHHHHHHHHHc-CCCHH---HHHHHHHHHcCCch---------
Confidence 111123456777665554443 3444444443221 11222 67889999999988
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +++
T Consensus 120 --------~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~ 191 (348)
T 3d31_A 120 --------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191 (348)
T ss_dssp --------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56999999999999999999999 999999984 899999999 578
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
..+|||+++ |++|+++..|++++++..|...++..++.
T Consensus 192 ~~~adri~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 192 RIMADRIAV-VMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp HHHCSEEEE-ESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 899999975 99999999999999999988777665554
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=6.4e-43 Score=342.67 Aligned_cols=211 Identities=13% Similarity=0.172 Sum_probs=165.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~ 70 (372)
T 1g29_1 2 AGVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADP 70 (372)
T ss_dssp EEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEG
T ss_pred CEEEEEeEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECccc
Confidence 36999999999964 344 666999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.........++.++|++|+...+..+ ++.+|+.++... ...++.+.++++.++++.++|.+
T Consensus 71 ~~~~~~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~-------- 131 (372)
T 1g29_1 71 EKGIFVPPKDRDIAMVFQSYALYPHM----------TVYDNIAFPLKL-RKVPRQEIDQRVREVAELLGLTE-------- 131 (372)
T ss_dssp GGTEECCGGGSSEEEECSCCCCCTTS----------CHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHTCGG--------
T ss_pred cccccCCHhHCCEEEEeCCCccCCCC----------CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCch--------
Confidence 00000111134566777665544433 344455444332 12345566788999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 132 ---------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 132 ---------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp ---------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+..+|||+++ |++|+++..|++++++..|...++..++
T Consensus 203 a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~ 240 (372)
T 1g29_1 203 AMTMGDRIAV-MNRGVLQQVGSPDEVYDKPANTFVAGFI 240 (372)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHhCCEEEE-EeCCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 8899999975 9999999999999999887765544443
No 15
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.6e-43 Score=337.09 Aligned_cols=201 Identities=14% Similarity=0.192 Sum_probs=152.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
..|+++||+|+|+.+..+ |++|||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 52 ~~i~~~~vs~~y~~~~~v-----L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~G~~i~~~ 121 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRET-----LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD-----ISSGCIRIDGQDISQV 121 (306)
T ss_dssp CCEEEEEEEEESSTTCEE-----EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC-----CSEEEEEETTEETTSB
T ss_pred CeEEEEEEEEEcCCCCce-----eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCcEEEECCEEcccC
Confidence 359999999999654434 777999999999999999999999999999999999 9999999999998611
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. . ...|+.++|++|+.. ++..++.+|+.++... .. .+++.++++.+++.+.+...|++
T Consensus 122 ~---~-~~~r~~i~~v~Q~~~-----------lf~~Tv~eNi~~~~~~---~~----~~~~~~~~~~~~l~~~i~~lp~g 179 (306)
T 3nh6_A 122 T---Q-ASLRSHIGVVPQDTV-----------LFNDTIADNIRYGRVT---AG----NDEVEAAAQAAGIHDAIMAFPEG 179 (306)
T ss_dssp C---H-HHHHHTEEEECSSCC-----------CCSEEHHHHHHTTSTT---CC----HHHHHHHHHHHTCHHHHHHSTTG
T ss_pred C---H-HHHhcceEEEecCCc-----------cCcccHHHHHHhhccc---CC----HHHHHHHHHHhCcHHHHHhccch
Confidence 0 0 001233455555544 4433555666654321 11 23456677777776655445555
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
+.+.++ +.+.+||||||||++||||| ||||++||. ++|+|+||| ..+.
T Consensus 180 l~t~~~------~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~ 253 (306)
T 3nh6_A 180 YRTQVG------ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253 (306)
T ss_dssp GGCEES------TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHH
T ss_pred hhhHhc------CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHH
Confidence 555554 44679999999999999999 999999984 899999999 4554
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
.||+|++ |++|++++.|++++++..
T Consensus 254 -~aD~i~v-l~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 254 -NADQILV-IKDGCIVERGRHEALLSR 278 (306)
T ss_dssp -TCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred -cCCEEEE-EECCEEEEECCHHHHHhc
Confidence 4999975 999999999999998864
No 16
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.2e-42 Score=316.20 Aligned_cols=203 Identities=17% Similarity=0.222 Sum_probs=161.7
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||+++|+. + |+++||+|++ ++++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~---~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 64 (240)
T 2onk_A 1 MFLKVRAEKRLGN---F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITP-- 64 (240)
T ss_dssp CCEEEEEEEEETT---E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC---E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 4789999999963 4 7779999999 9999999999999999999999999 999999999998751
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
....++.++|++|+...+..+ ++.+|+.++.... .....++++.++++.+|+.+
T Consensus 65 ----~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~--------- 118 (240)
T 2onk_A 65 ----LPPERRGIGFVPQDYALFPHL----------SVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAH--------- 118 (240)
T ss_dssp ----SCTTTSCCBCCCSSCCCCTTS----------CHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTT---------
T ss_pred ----CchhhCcEEEEcCCCccCCCC----------cHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHH---------
Confidence 111234567777765443332 3445554433211 11223567889999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
+.++++.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 119 --------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~ 190 (240)
T 2onk_A 119 --------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190 (240)
T ss_dssp --------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999984 799999999 567
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 325 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 325 (347)
..+||++++ |++|++++.|++++++..+ ++++..++...+.
T Consensus 191 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~-~~~~~~~~~~~~~ 231 (240)
T 2onk_A 191 AMLADEVAV-MLNGRIVEKGKLKELFSAK-NGEVAEFLSARNL 231 (240)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSC-CSSHHHHGGGHHH
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHHhCc-hHHHHHHhcCCcc
Confidence 889999975 9999999999999999887 7777666654433
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.4e-42 Score=326.00 Aligned_cols=195 Identities=13% Similarity=0.096 Sum_probs=154.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||++.|+. ..+ |++|||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~---~~v---L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ---QAL---INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNS 77 (266)
T ss_dssp CCEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTT
T ss_pred cceEEEEeEEEEeCC---eeE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 468999999999975 344 667999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.... . .++.++|++|+...+..+ ++.+|+.++.... .....++++.++++.+++.+
T Consensus 78 ~~~~---~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~------- 133 (266)
T 4g1u_C 78 WQPK---A-LARTRAVMRQYSELAFPF----------SVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLA------- 133 (266)
T ss_dssp SCHH---H-HHHHEEEECSCCCCCSCC----------BHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCST-------
T ss_pred CCHH---H-HhheEEEEecCCccCCCC----------CHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChh-------
Confidence 1110 0 112345666654332222 4555555543321 22345677889999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------------chhccCCCC-----------------CCeEEE
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~-----------------g~tiIi 276 (347)
+.++++.+||||||||++||||| ||||++||. ++|||+
T Consensus 134 ----------~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~ 203 (266)
T 4g1u_C 134 ----------LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203 (266)
T ss_dssp ----------TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEE
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45889999999999999999997 999999984 579999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
||| +.+..+|||+++ |++|++++.|++++++.
T Consensus 204 vtHdl~~~~~~~d~v~v-l~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 204 VLHDLNLAALYADRIML-LAQGKLVACGTPEEVLN 237 (266)
T ss_dssp ECSCHHHHHHHCSEEEE-EETTEEEEEECHHHHCC
T ss_pred EEcCHHHHHHhCCEEEE-EECCEEEEEcCHHHHhC
Confidence 999 578889999975 99999999999998865
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.3e-42 Score=324.45 Aligned_cols=196 Identities=13% Similarity=0.197 Sum_probs=152.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++||+++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 5 MEILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 73 (257)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEeeeEEEECC---Eee---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 457999999999964 234 667999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh-ccC-----------CChHHHHHHHHHHHHH
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV-IRR-----------SDSSSLRNRMRCKAHK 216 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~-~~~-----------~~~~~~~~~i~~~l~~ 216 (347)
.. .....++.++|++|+...+..+ ++.+|+.++... ... ......++++.++++.
T Consensus 74 ~~---~~~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 140 (257)
T 1g6h_A 74 KE---PAELYHYGIVRTFQTPQPLKEM----------TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140 (257)
T ss_dssp CC---HHHHHHHTEEECCCCCGGGGGS----------BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHH
T ss_pred CC---HHHHHhCCEEEEccCCccCCCC----------cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHH
Confidence 10 0011122345555554332221 455666554321 001 2234556778899999
Q ss_pred CCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------C
Q 019048 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 271 (347)
Q Consensus 217 ~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g 271 (347)
+||++ .+++++.+||||||||++||||| ||||++||. |
T Consensus 141 ~~l~~-----------------~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 203 (257)
T 1g6h_A 141 LKLSH-----------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 203 (257)
T ss_dssp TTCGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCch-----------------hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 99987 45899999999999999999999 999999984 8
Q ss_pred CeEEEEec--hHHHhcccEEEEEeeCCeEeecCCccc
Q 019048 272 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 306 (347)
Q Consensus 272 ~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 306 (347)
+|||++|| +.+..+||++++ |++|++++.|++++
T Consensus 204 ~tvi~vtHd~~~~~~~~d~v~~-l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRLDIVLNYIDHLYV-MFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCCSTTGGGCSEEEE-EETTEEEEEEESHH
T ss_pred CEEEEEecCHHHHHHhCCEEEE-EECCEEEEEeCHHH
Confidence 99999999 578889999975 99999999998887
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-42 Score=320.48 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=157.7
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.+++|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 12 ~~~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVV 80 (256)
T ss_dssp --CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred cCCeEEEEEEEEEECC---EEE---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 5789999999999964 234 667999999999999999999999999999999999 99999999999875
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
.. . ...++.++|++|+...+..+ +.+|+.+.. ... .......++++.++++.+||.+
T Consensus 81 ~~----~-~~~~~~i~~v~q~~~l~~~ltv~enl~~~~-----------~~~-~~~~~~~~~~~~~~l~~~gL~~----- 138 (256)
T 1vpl_A 81 EE----P-HEVRKLISYLPEEAGAYRNMQGIEYLRFVA-----------GFY-ASSSSEIEEMVERATEIAGLGE----- 138 (256)
T ss_dssp TC----H-HHHHTTEEEECTTCCCCTTSBHHHHHHHHH-----------HHH-CCCHHHHHHHHHHHHHHHCCGG-----
T ss_pred cc----H-HHHhhcEEEEcCCCCCCCCCcHHHHHHHHH-----------HHc-CCChHHHHHHHHHHHHHCCCch-----
Confidence 20 0 11134567888876555443 566654422 111 2223445567889999999987
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-- 279 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 139 ------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 139 ------------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp ------------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 45889999999999999999999 999999984 899999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.+..+||++++ |++|++++.|++++++..
T Consensus 207 ~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 207 LEVEFLCDRIAL-IHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTTCSEEEE-EETTEEEEEEEHHHHHHH
T ss_pred HHHHHHCCEEEE-EECCEEEEecCHHHHHHh
Confidence 577889999975 999999999999888654
No 20
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.5e-42 Score=312.41 Aligned_cols=193 Identities=19% Similarity=0.142 Sum_probs=148.3
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~y~~---~~~---l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 3 EILRAENIKKVIRG---YEI---LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSS
T ss_pred cEEEEEeEEEEECC---Eee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 47999999999974 234 677999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
...+.....++.++|++|+...+..+ +.+|+. ++.... .......++++.++++.+++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (224)
T 2pcj_A 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVI-----------VPMLKM-GKPKKEAKERGEYLLSELGLGD------- 132 (224)
T ss_dssp CHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH-----------HHHHHT-TCCHHHHHHHHHHHHHHTTCTT-------
T ss_pred CHHHHHHHHhCcEEEEecCcccCCCCCHHHHHH-----------hHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 10000001113456777765444333 455443 332211 2233455677889999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~ 282 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++|| ...
T Consensus 133 ----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 133 ----------KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp ----------CTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 45899999999999999999999 999999984 899999999 233
Q ss_pred HhcccEEEEEeeCCeEeecCC
Q 019048 283 LSLTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~ 303 (347)
..+||++++ |++|++++.|+
T Consensus 203 ~~~~d~v~~-l~~G~i~~~g~ 222 (224)
T 2pcj_A 203 AELTHRTLE-MKDGKVVGEIT 222 (224)
T ss_dssp HTTSSEEEE-EETTEEEEEEE
T ss_pred HHhCCEEEE-EECCEEEEEee
Confidence 489999975 99999998875
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6e-42 Score=316.81 Aligned_cols=197 Identities=16% Similarity=0.239 Sum_probs=153.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA---IHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CceEEEEeEEEEECC---eeE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 357999999999974 234 677999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCC-CCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g-l~~~~~~~~ 227 (347)
.. .....++.++|++|+...+..+ ++.+|+.++... ........+.+.++++.++ +.+
T Consensus 73 ~~---~~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~------ 131 (240)
T 1ji0_A 73 KP---AHVINRMGIALVPEGRRIFPEL----------TVYENLMMGAYN--RKDKEGIKRDLEWIFSLFPRLKE------ 131 (240)
T ss_dssp CC---HHHHHHTTEEEECSSCCCCTTS----------BHHHHHHGGGTT--CCCSSHHHHHHHHHHHHCHHHHT------
T ss_pred CC---HHHHHhCCEEEEecCCccCCCC----------cHHHHHHHhhhc--CCCHHHHHHHHHHHHHHcccHhh------
Confidence 11 1111123466777765444332 344444443211 1123345567788899994 876
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 132 -----------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 132 -----------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp -----------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 45889999999999999999999 999999984 899999999 4
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.+..+||++++ |++|++++.|++++++.
T Consensus 201 ~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 201 GALKVAHYGYV-LETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHCSEEEE-EETTEEEEEEEHHHHHT
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHhc
Confidence 78899999975 99999999999888764
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-41 Score=319.75 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=154.3
Q ss_pred cEEEeeeEEEeC-CCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYT-PGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~-~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+|+++||+++|+ ++. ...+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA---LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECch
Confidence 589999999996 221 0234 677999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccc-cccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC--ccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVIR 225 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~-~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~~~ 225 (347)
.. .++.++|++|+. ..+.. .++.+|+.++.... ......++++.++++.+||. +
T Consensus 74 ------~~-~~~~i~~v~q~~~~~~~~----------~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~---- 130 (266)
T 2yz2_A 74 ------YE-IRRNIGIAFQYPEDQFFA----------ERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDS---- 130 (266)
T ss_dssp ------HH-HGGGEEEECSSGGGGCCC----------SSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHH----
T ss_pred ------HH-hhhhEEEEeccchhhcCC----------CcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcc----
Confidence 11 123456776653 22211 14445555443211 11223346788899999998 7
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH- 279 (347)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 131 -------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 131 -------------FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp -------------HTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred -------------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56899999999999999999999 999999983 899999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 313 (347)
+.+..+||++++ |++|++++.|++++++..+.+
T Consensus 198 ~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~ 231 (266)
T 2yz2_A 198 IETVINHVDRVVV-LEKGKKVFDGTRMEFLEKYDP 231 (266)
T ss_dssp CTTTGGGCSEEEE-EETTEEEEEEEHHHHHHHSCC
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHHhcCccc
Confidence 577789999975 999999999999998866543
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.2e-41 Score=314.49 Aligned_cols=206 Identities=14% Similarity=0.137 Sum_probs=148.1
Q ss_pred cEEEeeeEEEeC-CCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~-~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
-|+++||+++|+ .+. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 7 ~~~~~~l~~~y~~~~~--~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSP--VI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEEEESSTTSC--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTS
T ss_pred ceeEEEEEEEeCCCCc--ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC
Confidence 389999999993 233 34 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. ... .++.++|++|+... +..++.+|+.++.. ... .+++.++++.+++.+.+...|++
T Consensus 77 ~---~~~-~~~~i~~v~Q~~~l-----------~~~tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~g 134 (247)
T 2ff7_A 77 D---PNW-LRRQVGVVLQDNVL-----------LNRSIIDNISLANP---GMS----VEKVIYAAKLAGAHDFISELREG 134 (247)
T ss_dssp C---HHH-HHHHEEEECSSCCC-----------TTSBHHHHHTTTCT---TCC----HHHHHHHHHHHTCHHHHHTSTTG
T ss_pred C---HHH-HHhcEEEEeCCCcc-----------ccccHHHHHhccCC---CCC----HHHHHHHHHHhChHHHHHhCcch
Confidence 0 000 12234555555433 22345566655321 111 23456677777776522111111
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHh
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLS 284 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~ 284 (347)
+ .+..++++.+||||||||++||||| ||||++||. |+|||+||| .....
T Consensus 135 l------~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 135 Y------NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp G------GCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred h------hhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 1 1123455789999999999999999 999999984 899999999 23335
Q ss_pred cccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 285 LTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
.||++++ |++|++++.|++++++..|...+
T Consensus 209 ~~d~v~~-l~~G~i~~~g~~~~l~~~~~~~~ 238 (247)
T 2ff7_A 209 NADRIIV-MEKGKIVEQGKHKELLSEPESLY 238 (247)
T ss_dssp TSSEEEE-EETTEEEEEECHHHHHTSTTCHH
T ss_pred hCCEEEE-EECCEEEEECCHHHHHhCCchHH
Confidence 6999975 99999999999999987764333
No 24
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=9.4e-41 Score=309.25 Aligned_cols=201 Identities=12% Similarity=0.153 Sum_probs=147.2
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++||+++|+.+. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 ml~~~~l~~~y~~~~--~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~- 69 (243)
T 1mv5_A 1 MLSARHVDFAYDDSE--QI---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNI- 69 (243)
T ss_dssp CEEEEEEEECSSSSS--CS---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTT-
T ss_pred CEEEEEEEEEeCCCC--ce---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC-
Confidence 489999999994223 23 777999999999999999999999999999999999 9999999999987521
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.. ...++.++|++|+...+. .++.+|+.++.. .... .+++.++++.+++.+.+...|+++
T Consensus 70 --~~-~~~~~~i~~v~q~~~l~~-----------~tv~enl~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~gl 129 (243)
T 1mv5_A 70 --SL-ENWRSQIGFVSQDSAIMA-----------GTIRENLTYGLE--GDYT----DEDLWQVLDLAFARSFVENMPDQL 129 (243)
T ss_dssp --SC-SCCTTTCCEECCSSCCCC-----------EEHHHHTTSCTT--SCSC----HHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred --CH-HHHHhhEEEEcCCCcccc-----------ccHHHHHhhhcc--CCCC----HHHHHHHHHHhChHHHHHhCccch
Confidence 11 112345677777654332 244555554321 0111 245677888888876331111111
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEech-HHHhc
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLSL 285 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH~-~~~~~ 285 (347)
. +..++++.+||||||||++||||| ||||++||. |+|||++||+ .....
T Consensus 130 ~------~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 203 (243)
T 1mv5_A 130 N------TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (243)
T ss_dssp G------CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred h------chhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh
Confidence 1 122455789999999999999999 999999984 8999999992 33346
Q ss_pred ccEEEEEeeCCeEeecCCcccccC
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
||++++ |++|++++.|++++++.
T Consensus 204 ~d~v~~-l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 204 ADKIYF-IEKGQITGSGKHNELVA 226 (243)
T ss_dssp CSEEEE-EETTEECCCSCHHHHHH
T ss_pred CCEEEE-EECCEEEEeCCHHHHHh
Confidence 999975 99999999999887764
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.6e-41 Score=315.86 Aligned_cols=202 Identities=13% Similarity=0.105 Sum_probs=151.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~y~~---~~v---L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~ 87 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG---KTI---LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPGK 87 (279)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC-
T ss_pred CceEEEEeEEEEECC---EEE---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 357999999999974 234 677999999999999999999999999999999999 999999999987630
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc---cCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
. ...... .++.++|++|+...+.. ...++.+|+.++.... .........+++.++++.+||.+
T Consensus 88 ~-~~~~~~-~~~~i~~v~Q~~~~~~~--------~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---- 153 (279)
T 2ihy_A 88 V-GYSAET-VRQHIGFVSHSLLEKFQ--------EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA---- 153 (279)
T ss_dssp ---CCHHH-HHTTEEEECHHHHTTSC--------TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG----
T ss_pred c-cCCHHH-HcCcEEEEEcCcccccC--------CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh----
Confidence 0 000000 12345566655432110 0014555555432110 01112344577889999999987
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeE--EEEe
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV--VVVT 278 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~ti--IiiT 278 (347)
.+++++.+||||||||++||||| ||||++||. |+|| |+||
T Consensus 154 -------------~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivt 220 (279)
T 2ihy_A 154 -------------KAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVT 220 (279)
T ss_dssp -------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 45899999999999999999999 999999984 7899 9999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 221 Hd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 221 HFIEEITANFSKILL-LKDGQSIQQGAVEDILT 252 (279)
T ss_dssp SCGGGCCTTCCEEEE-EETTEEEEEEEHHHHCS
T ss_pred cCHHHHHHhCCEEEE-EECCEEEEECCHHHHhc
Confidence 9 567789999975 99999999999888764
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.8e-40 Score=307.41 Aligned_cols=195 Identities=12% Similarity=0.103 Sum_probs=144.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhc--ccCCCCCCCCcEEEECCEeCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl--~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+ ++ |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 2 SQLEIRDLWASIDG---ETI---LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGENIL 70 (250)
T ss_dssp CEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEECT
T ss_pred ceEEEEeEEEEECC---EEE---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEECC
Confidence 37999999999964 234 6779999999999999999999999999999998 78 99999999999875
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC-ccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIR 225 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~~~~~ 225 (347)
... .....+..++|++|+...+..+ +.+|+.+..... ...........+++.++++.+|++ +
T Consensus 71 ~~~---~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~gl~~~---- 134 (250)
T 2d2e_A 71 ELS---PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAK---------LGREVGVAEFWTKVKKALELLDWDES---- 134 (250)
T ss_dssp TSC---HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHH---------HTSCCCHHHHHHHHHHHHHHHTCCGG----
T ss_pred CCC---HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhh---------ccccCCHHHHHHHHHHHHHHcCCChh----
Confidence 211 1111123456777776655544 555554322110 000112234456788899999995 5
Q ss_pred ccceeeeeechhhhhccCCCC-CCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~-LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH 279 (347)
+.++++.+ ||||||||++||||| ||||++||. |+|||+|||
T Consensus 135 -------------~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 135 -------------YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201 (250)
T ss_dssp -------------GGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred -------------HhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45888999 999999999999999 999999873 799999999
Q ss_pred --hHHHhc-ccEEEEEeeCCeEeecCCcc
Q 019048 280 --GDLLSL-TDRARIRTYLGELLGIPPAK 305 (347)
Q Consensus 280 --~~~~~~-aDri~v~l~~G~iv~~g~~~ 305 (347)
+.+..+ ||++++ |++|++++.|+++
T Consensus 202 d~~~~~~~~~d~v~~-l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 202 YQRILNYIQPDKVHV-MMDGRVVATGGPE 229 (250)
T ss_dssp SSGGGGTSCCSEEEE-EETTEEEEEESHH
T ss_pred CHHHHHHhcCCEEEE-EECCEEEEEeCHH
Confidence 567777 599975 9999999998875
No 27
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-41 Score=331.84 Aligned_cols=202 Identities=12% Similarity=0.136 Sum_probs=156.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
...|+++||+|+|+.+. ..+ |++|||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 17 ~~~i~~~~l~~~y~~~~-~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGG-NAI---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWDS 86 (390)
T ss_dssp SCCEEEEEEEEESSSSS-CCS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTTS
T ss_pred CCeEEEEEEEEEecCCC-eEE---eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECCc
Confidence 35699999999995322 234 677999999999999999999999999999999986 57999999998862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
... . ..++.++|++|+...+ +.++.+|+.+.. . ..++++.++++.++|.+
T Consensus 87 ~~~---~-~~rr~ig~v~Q~~~lf-----------~~tv~enl~~~~----~----~~~~~v~~~l~~~~L~~------- 136 (390)
T 3gd7_A 87 ITL---E-QWRKAFGVIPQKVFIF-----------SGTFRKNLDPNA----A----HSDQEIWKVADEVGLRS------- 136 (390)
T ss_dssp SCH---H-HHHHTEEEESCCCCCC-----------SEEHHHHHCTTC----C----SCHHHHHHHHHHTTCHH-------
T ss_pred CCh---H-HHhCCEEEEcCCcccC-----------ccCHHHHhhhcc----c----cCHHHHHHHHHHhCCHH-------
Confidence 110 0 0123455666655443 334555554211 1 12356778999999987
Q ss_pred eeeeeechhhhhccCCCC-----------CCHHHHHHHHHHHHh---------chhccCCCC---------------CCe
Q 019048 229 FVIFVVDGLAVLKSMEGD-----------SDVEKQYNQIVATTF---------NCPYLSFRD---------------DKP 273 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~-----------LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~t 273 (347)
+++++|.+ ||||||||++||||| ||||++||. ++|
T Consensus 137 ----------~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~t 206 (390)
T 3gd7_A 137 ----------VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCT 206 (390)
T ss_dssp ----------HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSC
T ss_pred ----------HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 45777777 999999999999999 999999883 899
Q ss_pred EEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 274 VVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 274 iIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+|+||| ..+...||||++ |++|+|++.|++++++..|.+.++..++.
T Consensus 207 vi~vtHd~e~~~~aDri~v-l~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 207 VILCEARIEAMLECDQFLV-IEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp EEEECSSSGGGTTCSEEEE-EETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred EEEEEcCHHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 999999 456677999975 99999999999999999998777666654
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.1e-40 Score=313.92 Aligned_cols=198 Identities=10% Similarity=0.103 Sum_probs=145.3
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+.+....+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 15 ~~l~~~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~~~ 86 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQV---LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPLVQY 86 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCC---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGGB
T ss_pred ceEEEEEEEEEeCCCCCcee---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEcccC
Confidence 57999999999964211123 777999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHH-----HHHHHHHHHHHC--CCCcc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-----LRNRMRCKAHKI--GCEPS 222 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~-----~~~~i~~~l~~~--gl~~~ 222 (347)
... ..++.++|++|+...+. .++.+|+.++.... ..... ....+.++++.+ |++.
T Consensus 87 ---~~~-~~~~~i~~v~Q~~~l~~-----------~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~- 148 (271)
T 2ixe_A 87 ---DHH-YLHTQVAAVGQEPLLFG-----------RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDT- 148 (271)
T ss_dssp ---CHH-HHHHHEEEECSSCCCCS-----------SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGS-
T ss_pred ---CHH-HHhccEEEEecCCcccc-----------ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhh-
Confidence 000 01224566666554332 24455555432210 01011 112345567777 5655
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIi 276 (347)
.+++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 149 ----------------~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tvii 212 (271)
T 2ixe_A 149 ----------------EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212 (271)
T ss_dssp ----------------BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEE
T ss_pred ----------------hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 34788999999999999999999 999999873 789999
Q ss_pred Eech-HHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 277 VTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 277 iTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|||+ .....||++++ |++|++++.|++++++..
T Consensus 213 vtHd~~~~~~~d~v~~-l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 213 ITQQLSLAERAHHILF-LKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp ECSCHHHHTTCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred EeCCHHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 9992 33345999975 999999999999888754
No 29
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9.8e-40 Score=336.99 Aligned_cols=227 Identities=12% Similarity=0.178 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhhhhhhhc---c---CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHH
Q 019048 47 QRRRDAVFREVLQSYDQLRT---R---IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~---~---~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLl 120 (347)
......|+.++++.+++... . ....|+++||+|+|+++. ..+ |+|+||+|++||++||+||||||||||+
T Consensus 311 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~i~l~i~~G~~~~ivG~sGsGKSTll 386 (582)
T 3b5x_A 311 GMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE-KPA---LSHVSFSIPQGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred HHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCC-ccc---cccceEEECCCCEEEEECCCCCCHHHHH
Confidence 33456677887765433211 1 124699999999997431 234 6669999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC
Q 019048 121 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 200 (347)
Q Consensus 121 k~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~ 200 (347)
|+|+|+++ |++|+|.++|+++.. +...+.+...++|+|++.++..++.+|+.++.. ..
T Consensus 387 ~~l~g~~~-----p~~G~i~~~g~~~~~---------------~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~--~~ 444 (582)
T 3b5x_A 387 NLFTRFYD-----VDSGSICLDGHDVRD---------------YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE--GE 444 (582)
T ss_pred HHHhcCCC-----CCCCEEEECCEEhhh---------------CCHHHHhcCeEEEcCCCccccccHHHHHhccCC--CC
Confidence 99999999 999999999998751 111222333444555555555577788776531 01
Q ss_pred CChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-
Q 019048 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 270 (347)
Q Consensus 201 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 270 (347)
..++++.++++.+++.+.+...|+++.+.+++ .+.+||||||||++||||| ||||++||.
T Consensus 445 ----~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~------~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b5x_A 445 ----YTREQIEQAARQAHAMEFIENMPQGLDTVIGE------NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514 (582)
T ss_pred ----CCHHHHHHHHHHCCCHHHHHhCcccccchhcC------CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 12356778899999987665666666665544 4679999999999999999 999999984
Q ss_pred --------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 --------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|+|+|+||| -.....||++++ |++|++++.|++++++..
T Consensus 515 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 515 SERAIQAALDELQKNKTVLVIAHRLSTIEQADEILV-VDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 899999999 334457999975 999999999999999865
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.5e-39 Score=303.89 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=151.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhc--ccCCCCCCCCcEEEECCEeC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl--~~~~~~~p~~G~I~~~g~~i 146 (347)
+++|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+ ++ |++|+|.++|+++
T Consensus 18 ~~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~i 86 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED---KAI---LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDL 86 (267)
T ss_dssp --CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEEG
T ss_pred CceEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEEC
Confidence 458999999999964 234 6679999999999999999999999999999999 46 8999999999987
Q ss_pred CCCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhh--hhhhhccCCChHHHHHHHHHHHHHCCCCccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVR--HGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~--~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
.... .....+..++|++|+...+..+ +.+++.+... +.. .+. ......+..+++.++++.+|+...
T Consensus 87 ~~~~---~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~l~~~gl~~~- 155 (267)
T 2zu0_C 87 LALS---PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALN----AVRSYRGQ---ETLDRFDFQDLMEEKIALLKMPED- 155 (267)
T ss_dssp GGSC---HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHH----HHHHGGGC---CCCCHHHHHHHHHHHHHHTTCCTT-
T ss_pred CcCC---HHHHhhCCEEEEccCccccccccHHHHHHHHHH----hhhhhhcc---ccCCHHHHHHHHHHHHHHcCCChh-
Confidence 4111 1111122467888877665554 5666543211 111 010 012234456678899999999642
Q ss_pred ccccceeeeeechhhhhccCCC-CCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEE
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 277 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIii 277 (347)
+.++++. +||||||||++||||| ||||++||. |+|||++
T Consensus 156 ---------------~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 156 ---------------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220 (267)
T ss_dssp ---------------TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred ---------------HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3477887 5999999999999999 999999873 7899999
Q ss_pred ec--hHHHhc-ccEEEEEeeCCeEeecCCccccc
Q 019048 278 TH--GDLLSL-TDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 278 TH--~~~~~~-aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
|| +.+..+ ||++++ |++|++++.|++++++
T Consensus 221 tHd~~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 221 THYQRILDYIKPDYVHV-LYQGRIVKSGDFTLVK 253 (267)
T ss_dssp CSSGGGGGTSCCSEEEE-EETTEEEEEECTTHHH
T ss_pred eeCHHHHHhhcCCEEEE-EECCEEEEEcCHHHHh
Confidence 99 456665 899975 9999999999887654
No 31
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.1e-40 Score=367.71 Aligned_cols=231 Identities=15% Similarity=0.134 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc--------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 46 DQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
.......|+.++++..++.... ...-|+++||+|+|+.+...++ |+|+||+|++||.+|||||||||||
T Consensus 1043 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V---L~~isl~I~~Ge~vaIVG~SGsGKS 1119 (1321)
T 4f4c_A 1043 KATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI---LKGLSFSVEPGQTLALVGPSGCGKS 1119 (1321)
T ss_dssp HHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS---EEEEEEEECTTCEEEEECSTTSSTT
T ss_pred HHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc---ccceeEEECCCCEEEEECCCCChHH
Confidence 3444566788877655442111 1235999999999975433344 6779999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+++|.|+++ |++|+|.+||.|+. .+...+.|...++|+|++.++..++.+|+.+|...
T Consensus 1120 TL~~lL~rl~~-----p~~G~I~iDG~di~---------------~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~ 1179 (1321)
T 4f4c_A 1120 TVVALLERFYD-----TLGGEIFIDGSEIK---------------TLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP 1179 (1321)
T ss_dssp SHHHHHTTSSC-----CSSSEEEETTEETT---------------TBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT
T ss_pred HHHHHHhcCcc-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC
Confidence 99999999999 99999999999997 34445555555556666666666677777655321
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
.....+++.++++.+++.+.+...|+++.+.|.+. ..+||||||||++||||| |||||+|
T Consensus 1180 -----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~------G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaL 1248 (1321)
T 4f4c_A 1180 -----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR------GTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248 (1321)
T ss_dssp -----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT------SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCST
T ss_pred -----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCC------CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccC
Confidence 12234668889999999988888899999999887 358999999999999999 9999999
Q ss_pred CC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 269 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 269 d~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
|. ++|+|+||| -.....||||+| |++|+|+|.|+|+++++..
T Consensus 1249 D~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~V-ld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1249 DTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAV-VSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp TSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEE-ESSSSEEEEECHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEE-EECCEEEEECCHHHHHhCC
Confidence 84 899999999 355667999975 9999999999999999864
No 32
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.1e-40 Score=338.35 Aligned_cols=226 Identities=11% Similarity=0.109 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcc--------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHH
Q 019048 47 QRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 118 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKST 118 (347)
......|+.++++.+++.... ....|+++||+|+|+.+. ..+ |+|+||+|++||++||+|||||||||
T Consensus 307 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~G~~~~ivG~sGsGKST 382 (578)
T 4a82_A 307 SFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKST 382 (578)
T ss_dssp HHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred HHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCC-Ccc---eeeeEEEECCCCEEEEECCCCChHHH
Confidence 344566888887665432111 123599999999997532 234 77799999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc
Q 019048 119 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 198 (347)
Q Consensus 119 Llk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~ 198 (347)
|+++|+|+++ |++|+|.++|+++... .. ...|+.+++++|+.. ++..++.+|+.++..
T Consensus 383 ll~~l~g~~~-----p~~G~i~~~g~~~~~~---~~-~~~r~~i~~v~Q~~~-----------l~~~tv~eni~~~~~-- 440 (578)
T 4a82_A 383 LINLIPRFYD-----VTSGQILIDGHNIKDF---LT-GSLRNQIGLVQQDNI-----------LFSDTVKENILLGRP-- 440 (578)
T ss_dssp HHTTTTTSSC-----CSEEEEEETTEEGGGS---CH-HHHHHTEEEECSSCC-----------CCSSBHHHHHGGGCS--
T ss_pred HHHHHhcCCC-----CCCcEEEECCEEhhhC---CH-HHHhhheEEEeCCCc-----------cCcccHHHHHhcCCC--
Confidence 9999999999 9999999999998611 00 001233455555544 443455566655432
Q ss_pred cCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC
Q 019048 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 269 (347)
Q Consensus 199 ~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 269 (347)
.. ..+++.++++.+++.+.+...|+++.+.+++. +.+||||||||++||||| ||||++||
T Consensus 441 -~~----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~------g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD 509 (578)
T 4a82_A 441 -TA----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGER------GVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509 (578)
T ss_dssp -SC----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG------GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCC
T ss_pred -CC----CHHHHHHHHHHhCcHHHHHhCcchhhhhhccC------CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 11 12456677888888776666667777666654 568999999999999999 99999998
Q ss_pred C---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 270 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 270 ~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
. ++|+|+||| -.....||||++ |++|++++.|++++++..
T Consensus 510 ~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~-l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 510 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVV-IENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEE-EETTEEEEEECHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE-EECCEEEEECCHHHHHhC
Confidence 4 899999999 334456999975 999999999999999865
No 33
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.6e-39 Score=335.48 Aligned_cols=225 Identities=10% Similarity=0.084 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhhhhhhhc---c---CCCcEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRT---R---IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---~---~~~~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLl 120 (347)
.....|+.++++.+++... . ....|+++||+|+|+++ ..+ |+|+||+|++||++||+||||||||||+
T Consensus 312 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~v~~~i~~G~~~~ivG~sGsGKSTLl 386 (582)
T 3b60_A 312 MAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA-----LRNINLKIPAGKTVALVGRSGSGKSTIA 386 (582)
T ss_dssp HHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEECTTCEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCcc-----ccceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 3456677887765443211 1 12469999999999743 333 7779999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC
Q 019048 121 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 200 (347)
Q Consensus 121 k~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~ 200 (347)
|+|+|+++ |++|+|.++|+++.... .. ..++.+++++|+...+ ..++.+|+.++.. ..
T Consensus 387 ~~l~g~~~-----p~~G~i~~~g~~~~~~~---~~-~~~~~i~~v~Q~~~l~-----------~~tv~eni~~~~~--~~ 444 (582)
T 3b60_A 387 SLITRFYD-----IDEGHILMDGHDLREYT---LA-SLRNQVALVSQNVHLF-----------NDTVANNIAYART--EE 444 (582)
T ss_dssp HHHTTTTC-----CSEEEEEETTEETTTBC---HH-HHHHTEEEECSSCCCC-----------SSBHHHHHHTTTT--SC
T ss_pred HHHhhccC-----CCCCeEEECCEEccccC---HH-HHHhhCeEEccCCcCC-----------CCCHHHHHhccCC--CC
Confidence 99999999 99999999999986110 00 0122345555554443 3345566655431 01
Q ss_pred CChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-
Q 019048 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 270 (347)
Q Consensus 201 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 270 (347)
. .++++.++++.+++.+.+...|+++.+.+++ .+.+||||||||++||||| ||||++||.
T Consensus 445 ~----~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~------~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b60_A 445 Y----SREQIEEAARMAYAMDFINKMDNGLDTIIGE------NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_dssp C----CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCT------TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred C----CHHHHHHHHHHcCCHHHHHhccccccccccC------CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 1 1356778899999987665566666665544 4679999999999999999 999999984
Q ss_pred --------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 --------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|+|+|+||| -...+.||++++ |++|++++.|++++++..
T Consensus 515 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 515 SERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV-VEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE-EECCEEEEecCHHHHHHc
Confidence 899999999 344457999975 999999999999998764
No 34
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.9e-39 Score=335.62 Aligned_cols=233 Identities=12% Similarity=0.095 Sum_probs=161.8
Q ss_pred HHHHHHHHHHhhhhhhhc----c----CCCc-EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHH
Q 019048 49 RRDAVFREVLQSYDQLRT----R----IGSL-TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 119 (347)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~----~----~~~~-l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTL 119 (347)
....|+.++++.+++... . .... |+++||+|+|+++....+ |+|+||+|++||++||+||||||||||
T Consensus 310 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~v---l~~isl~i~~G~~~~ivG~sGsGKSTL 386 (595)
T 2yl4_A 310 GAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPI---FQDFSLSIPSGSVTALVGPSGSGKSTV 386 (595)
T ss_dssp HHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEE---EEEEEEEECTTCEEEEECCTTSSSTHH
T ss_pred HHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCcc---ccceEEEEcCCCEEEEECCCCCCHHHH
Confidence 456678887765432111 0 1234 999999999974321234 777999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc
Q 019048 120 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 199 (347)
Q Consensus 120 lk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~ 199 (347)
+|+|+|+++ |++|+|.++|+++.... .. ..++.+++++|+.. ++..++.+|+.++.....
T Consensus 387 l~~l~g~~~-----p~~G~i~~~g~~i~~~~---~~-~~~~~i~~v~Q~~~-----------l~~~tv~eni~~~~~~~~ 446 (595)
T 2yl4_A 387 LSLLLRLYD-----PASGTISLDGHDIRQLN---PV-WLRSKIGTVSQEPI-----------LFSCSIAENIAYGADDPS 446 (595)
T ss_dssp HHHHTTSSC-----CSEEEEEETTEETTTBC---HH-HHHHSEEEECSSCC-----------CCSSBHHHHHHTTSSSTT
T ss_pred HHHHhcCcC-----CCCcEEEECCEEhhhCC---HH-HHHhceEEEccCCc-----------ccCCCHHHHHhhcCCCcc
Confidence 999999999 99999999999986110 00 01223455555544 333355566665432100
Q ss_pred CCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC
Q 019048 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 270 (347)
Q Consensus 200 ~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 270 (347)
...++++.++++.+++.+.+...|+++.+.++ +.+.+||||||||++||||| ||||++||.
T Consensus 447 ----~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~------~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 447 ----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG------EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp ----TSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCS------SSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred ----ccCHHHHHHHHHHcCCHHHHHhCccccccccc------CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 11235677889999987654444555444443 34679999999999999999 999999984
Q ss_pred ---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 271 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 271 ---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
++|+|+||| -.....||++++ |++|++++.|++++++..+...+
T Consensus 517 ~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~~~~~~ 576 (595)
T 2yl4_A 517 ENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAV-LDQGKITEYGKHEELLSKPNGIY 576 (595)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEE-EETTEEEEEECSCC------C--
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEE-EECCEEEEECCHHHHHhCCChHH
Confidence 899999999 233456999975 99999999999999987544444
No 35
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-39 Score=336.32 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHhhhhhhhcc--------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 119 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTL 119 (347)
.....|+.++++.+++..+. ....|+++||+|+|+.+. ..+ |+|+||+|++||++||+||||||||||
T Consensus 310 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~Ge~~~ivG~sGsGKSTl 385 (587)
T 3qf4_A 310 SASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENT-DPV---LSGVNFSVKPGSLVAVLGETGSGKSTL 385 (587)
T ss_dssp HHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCC-Ccc---eeceEEEEcCCCEEEEECCCCCCHHHH
Confidence 34566888887655432111 123599999999996432 234 777999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc
Q 019048 120 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 199 (347)
Q Consensus 120 lk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~ 199 (347)
+++|+|+++ |++|+|.++|+++... +. ...|+.+++++|+. .++..++.+|+.++..
T Consensus 386 l~~l~g~~~-----~~~G~i~i~g~~i~~~---~~-~~~r~~i~~v~Q~~-----------~lf~~tv~eni~~~~~--- 442 (587)
T 3qf4_A 386 MNLIPRLID-----PERGRVEVDELDVRTV---KL-KDLRGHISAVPQET-----------VLFSGTIKENLKWGRE--- 442 (587)
T ss_dssp HHTTTTSSC-----CSEEEEEESSSBGGGB---CH-HHHHHHEEEECSSC-----------CCCSEEHHHHHTTTCS---
T ss_pred HHHHhCCcc-----CCCcEEEECCEEcccC---CH-HHHHhheEEECCCC-----------cCcCccHHHHHhccCC---
Confidence 999999999 9999999999987510 00 00122345555554 4443355566654432
Q ss_pred CCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC
Q 019048 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 270 (347)
Q Consensus 200 ~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 270 (347)
... .+++.++++..++.+.+...|+++.+.++ +.+.+||||||||++||||| ||||++||.
T Consensus 443 ~~~----~~~~~~~~~~~~~~~~i~~l~~g~~~~~~------~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~ 512 (587)
T 3qf4_A 443 DAT----DDEIVEAAKIAQIHDFIISLPEGYDSRVE------RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512 (587)
T ss_dssp SCC----HHHHHHHHHHTTCHHHHHTSSSGGGCEEC------SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCH
T ss_pred CCC----HHHHHHHHHHhCcHHHHHhcccchhhHhc------CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 111 23455667777776655555555555544 45789999999999999999 999999983
Q ss_pred ---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 ---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|+|+|+||| -.....||||++ |++|++++.|++++++..
T Consensus 513 ~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v-l~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 513 ITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILV-LHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 899999999 344568999975 999999999999998754
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.1e-39 Score=298.66 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=145.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+.+.. + |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 3 ~~l~i~~l~~~y~~~~~--v---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~------- 65 (253)
T 2nq2_C 3 KALSVENLGFYYQAENF--L---FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEVY------- 65 (253)
T ss_dssp EEEEEEEEEEEETTTTE--E---EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEEC-------
T ss_pred ceEEEeeEEEEeCCCCe--E---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEe-------
Confidence 36999999999972233 4 777999999999999999999999999999999999 999999821
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccC---CChHHHHHHHHHHHHHCCCCccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~---~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
+.++|++|+...+..+ +.+|+. ++...... .......+++.++++.+|+.+
T Consensus 66 ----------~~i~~v~q~~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 120 (253)
T 2nq2_C 66 ----------QSIGFVPQFFSSPFAYSVLDIVL-----------MGRSTHINTFAKPKSHDYQVAMQALDYLNLTH---- 120 (253)
T ss_dssp ----------SCEEEECSCCCCSSCCBHHHHHH-----------GGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG----
T ss_pred ----------ccEEEEcCCCccCCCCCHHHHHH-----------HhhhhhcccccCCCHHHHHHHHHHHHHcCChH----
Confidence 2357888876544332 455443 33211100 112344577889999999987
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH 279 (347)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 121 -------------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 121 -------------LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp -------------GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEES
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45889999999999999999999 999999873 789999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
+.+..+||++++ |++|+ ++.|++++++.
T Consensus 188 d~~~~~~~~d~v~~-l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 188 QPNQVVAIANKTLL-LNKQN-FKFGETRNILT 217 (253)
T ss_dssp CHHHHHHHCSEEEE-EETTE-EEEEEHHHHCC
T ss_pred CHHHHHHhCCEEEE-EeCCe-EecCCHHHHhC
Confidence 567789999975 99999 99999888763
No 37
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7e-40 Score=339.19 Aligned_cols=224 Identities=15% Similarity=0.181 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhhhhhhhcc-------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLl 120 (347)
.....|+.++++.+++.... ....|+++||+|+|+.+. .+ |+|+||+|++||++||+||||||||||+
T Consensus 324 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~--~~---l~~isl~i~~G~~~~ivG~sGsGKSTll 398 (598)
T 3qf4_B 324 LASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK--PV---LKDITFHIKPGQKVALVGPTGSGKTTIV 398 (598)
T ss_dssp HHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSS--CS---CCSEEEECCTTCEEEEECCTTSSTTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCC--cc---ccceEEEEcCCCEEEEECCCCCcHHHHH
Confidence 44666888887655432111 123599999999997543 34 6669999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC
Q 019048 121 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 200 (347)
Q Consensus 121 k~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~ 200 (347)
|+|+|+++ |++|+|.++|+++.... . ...|+.+++++|+. .++..++.+|+.++.. .
T Consensus 399 ~~l~g~~~-----p~~G~i~~~g~~i~~~~---~-~~~r~~i~~v~Q~~-----------~lf~~tv~eni~~~~~---~ 455 (598)
T 3qf4_B 399 NLLMRFYD-----VDRGQILVDGIDIRKIK---R-SSLRSSIGIVLQDT-----------ILFSTTVKENLKYGNP---G 455 (598)
T ss_dssp HHHTTSSC-----CSEEEEEETTEEGGGSC---H-HHHHHHEEEECTTC-----------CCCSSBHHHHHHSSST---T
T ss_pred HHHhcCcC-----CCCeEEEECCEEhhhCC---H-HHHHhceEEEeCCC-----------ccccccHHHHHhcCCC---C
Confidence 99999999 99999999999986110 0 00122345555554 4444455566655422 1
Q ss_pred CChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-
Q 019048 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 270 (347)
Q Consensus 201 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 270 (347)
.. .+++.++++.+++.+.+...|+++.+.+++. +.+||||||||++||||| ||||++||.
T Consensus 456 ~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~------g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~ 525 (598)
T 3qf4_B 456 AT----DEEIKEAAKLTHSDHFIKHLPEGYETVLTDN------GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525 (598)
T ss_dssp CC----TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHH------HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHH
T ss_pred CC----HHHHHHHHHHhCCHHHHHhccccccchhcCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 11 2345667778888776656666776666655 358999999999999999 999999984
Q ss_pred --------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 --------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|+|+|+||| -.....||+|++ |++|++++.|++++++..
T Consensus 526 ~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 526 TEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIV-LRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEE-ECSSSEEECSCHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE-EECCEEEEECCHHHHHhC
Confidence 899999999 233455999975 999999999999999865
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.7e-39 Score=302.53 Aligned_cols=203 Identities=11% Similarity=0.139 Sum_probs=145.1
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+......+ |+++||+|++|++++|+||||||||||+|+|+|+++ | +|+|.++|+++...
T Consensus 16 ~~l~i~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~~~ 86 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRT---LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVNKY 86 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGGGB
T ss_pred CeEEEEEEEEEeCCCCcCce---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhhhc
Confidence 57999999999975321124 677999999999999999999999999999999998 7 79999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.... .++.++|++|+...+. .++.+|+.++.. ... .+++.++++.+++.+.+...++.
T Consensus 87 ---~~~~-~~~~i~~v~Q~~~l~~-----------~tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~l~~~ 144 (260)
T 2ghi_A 87 ---NRNS-IRSIIGIVPQDTILFN-----------ETIKYNILYGKL---DAT----DEEVIKATKSAQLYDFIEALPKK 144 (260)
T ss_dssp ---CHHH-HHTTEEEECSSCCCCS-----------EEHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHTSTTG
T ss_pred ---CHHH-HhccEEEEcCCCcccc-----------cCHHHHHhccCC---CCC----HHHHHHHHHHhCCHHHHHhcccc
Confidence 0001 1234566666654332 244455554321 111 23456677777775421001111
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEech-HHHh
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLS 284 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH~-~~~~ 284 (347)
+. +..++++.+||||||||++||||| ||||++||. ++|||+|||+ ....
T Consensus 145 ~~------~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 145 WD------TIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS 218 (260)
T ss_dssp GG------CEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST
T ss_pred cc------ccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 10 113467889999999999999999 999999984 7999999992 3335
Q ss_pred cccEEEEEeeCCeEeecCCcccccCC
Q 019048 285 LTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
.||++++ |++|++++.|++++++..
T Consensus 219 ~~d~i~~-l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 219 SAESIIL-LNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp TCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred hCCEEEE-EECCEEEEECCHHHHHhc
Confidence 6999975 999999999999888753
No 39
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.4e-39 Score=300.19 Aligned_cols=185 Identities=13% Similarity=0.121 Sum_probs=145.4
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++||+++ .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |+ |+|.++|+++...
T Consensus 4 ~l~~~~l~~~-----~v-----l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~~~- 66 (249)
T 2qi9_C 4 VMQLQDVAES-----TR-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLEAW- 66 (249)
T ss_dssp EEEEEEEEET-----TT-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGGGS-
T ss_pred EEEEEceEEE-----EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECCcC-
Confidence 6999999986 14 788999999999999999999999999999999999 99 9999999987410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.... .++.++|++|+...+..+ ++.+|+.++... ... .+++.++++.+|+.+
T Consensus 67 --~~~~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~--~~~----~~~~~~~l~~~~l~~--------- 118 (249)
T 2qi9_C 67 --SATK-LALHRAYLSQQQTPPFAT----------PVWHYLTLHQHD--KTR----TELLNDVAGALALDD--------- 118 (249)
T ss_dssp --CHHH-HHHHEEEECSCCCCCTTC----------BHHHHHHTTCSS--TTC----HHHHHHHHHHTTCGG---------
T ss_pred --CHHH-HhceEEEECCCCccCCCC----------cHHHHHHHhhcc--CCc----HHHHHHHHHHcCChh---------
Confidence 0000 122345666654433222 455555543211 111 566888999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh----------------chhccCCCC----------------CCeEEEEe
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVT 278 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tiIiiT 278 (347)
++++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 119 --------~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 119 --------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp --------GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45889999999999999999998 799999984 89999999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 191 Hd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 191 HDLNHTLRHAHRAWL-LKGGKMLASGRREEVLT 222 (249)
T ss_dssp SCHHHHHHHCSEEEE-EETTEEEEEEEHHHHSC
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEeCCHHHHhc
Confidence 9 567789999975 99999999999888764
No 40
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.2e-39 Score=359.59 Aligned_cols=227 Identities=13% Similarity=0.138 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcc---------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 47 QRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
......|+.++++.++..... ...-|+++||+|+|+.....++ |+|+||+|++|+.+|||||||||||
T Consensus 382 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v---L~~isl~i~~G~~vaivG~sGsGKS 458 (1321)
T 4f4c_A 382 AQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI---LRGMNLRVNAGQTVALVGSSGCGKS 458 (1321)
T ss_dssp HHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS---EEEEEEEECTTCEEEEEECSSSCHH
T ss_pred HHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce---eeceEEeecCCcEEEEEecCCCcHH
Confidence 344566888888765442111 1124999999999975432344 6779999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+++|.|+++ |++|+|.+||.++. .+.....+...++|.|++.++..++.+|+.+|..
T Consensus 459 Tll~ll~~~~~-----~~~G~I~idG~~i~---------------~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~- 517 (1321)
T 4f4c_A 459 TIISLLLRYYD-----VLKGKITIDGVDVR---------------DINLEFLRKNVAVVSQEPALFNCTIEENISLGKE- 517 (1321)
T ss_dssp HHHHHHTTSSC-----CSEEEEEETTEETT---------------TSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT-
T ss_pred HHHHHhccccc-----cccCcccCCCccch---------------hccHHHHhhcccccCCcceeeCCchhHHHhhhcc-
Confidence 99999999999 99999999999987 2344444555555666666666667777766542
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
...++++.++++.+++++.+..+|+++.++|.+++ .+||||||||++||||+ |||||+|
T Consensus 518 ------~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G------~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaL 585 (1321)
T 4f4c_A 518 ------GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRG------TQLSGGQKQRIAIARALVRNPKILLLDEATSAL 585 (1321)
T ss_dssp ------TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS------CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred ------cchHHHHHHHHHHccchhHHHcCCCCCccEecCCC------CCCCHHHHHHHHHHHHHccCCCEEEEecccccC
Confidence 11246788899999999888889999999998874 48999999999999999 9999999
Q ss_pred CC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 269 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 269 d~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|. |+|+|+||| -...+.||+|++ |++|+|++.|+|++++..
T Consensus 586 D~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iiv-l~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 586 DAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIIS-CKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp CTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEE-EETTEEEEEECHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEE-eeCCeeeccCCHHHHHHh
Confidence 94 899999999 466788999975 999999999999999875
No 41
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.4e-38 Score=296.69 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=145.2
Q ss_pred cEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
||+++||+++|+.+ ....+ |+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~~~~~~i---l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~~- 69 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS---LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVRK- 69 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE---EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGGG-
T ss_pred CEEEEEEEEEeCCCCcccee---EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECcc-
Confidence 58999999999631 00234 677999999 9999999999999999999999987 478999999998741
Q ss_pred ccccccccCCCccc-eeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC-ccccccc
Q 019048 150 YFLQEYTIPRGSNS-FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~-~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~~~~~~~ 227 (347)
... ++.++ |++|+... ...+.+|+.+. .... . ...+++.++++.+++. +
T Consensus 70 -----~~~-~~~i~~~v~Q~~~l-~~tv~enl~~~-----------~~~~-~----~~~~~~~~~l~~~gl~~~------ 120 (263)
T 2pjz_A 70 -----IRN-YIRYSTNLPEAYEI-GVTVNDIVYLY-----------EELK-G----LDRDLFLEMLKALKLGEE------ 120 (263)
T ss_dssp -----CSC-CTTEEECCGGGSCT-TSBHHHHHHHH-----------HHHT-C----CCHHHHHHHHHHTTCCGG------
T ss_pred -----hHH-hhheEEEeCCCCcc-CCcHHHHHHHh-----------hhhc-c----hHHHHHHHHHHHcCCChh------
Confidence 111 34566 77666543 22255554432 2111 1 1135678899999998 6
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~ 283 (347)
.+++++.+||||||||++||||| ||||++||. ..|||++|| +.+.
T Consensus 121 -----------~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~ 189 (263)
T 2pjz_A 121 -----------ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLN 189 (263)
T ss_dssp -----------GGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGG
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHH
Confidence 45889999999999999999999 999999984 239999999 5677
Q ss_pred hccc-EEEEEeeCCeEeecCCcccccC
Q 019048 284 SLTD-RARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 284 ~~aD-ri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.+|| ++++ |++|++++.|++++++.
T Consensus 190 ~~~d~~i~~-l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 190 LYKEYKAYF-LVGNRLQGPISVSELLE 215 (263)
T ss_dssp GCTTSEEEE-EETTEEEEEEEHHHHHT
T ss_pred HhcCceEEE-EECCEEEEecCHHHHHh
Confidence 8999 9975 99999999999988874
No 42
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2e-38 Score=288.79 Aligned_cols=175 Identities=14% Similarity=0.217 Sum_probs=139.9
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||+++|+. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~l~~~~ls~~y~~--~i-----l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~- 74 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT- 74 (214)
T ss_dssp -CEEEEEEEEEESSS--EE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred CceEEEEEEEEEeCC--eE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhh-
Confidence 468999999999964 34 777999999999999999999999999999999999 99999999998863
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
. .++.++|++|+...+..+ +.+|+.+.. ..... . .. ++++.++++.+|+++
T Consensus 75 -----~---~~~~i~~v~q~~~~~~~~tv~enl~~~~-----------~~~~~-~-~~-~~~~~~~l~~~gl~~------ 126 (214)
T 1sgw_A 75 -----K---VKGKIFFLPEEIIVPRKISVEDYLKAVA-----------SLYGV-K-VN-KNEIMDALESVEVLD------ 126 (214)
T ss_dssp -----G---GGGGEEEECSSCCCCTTSBHHHHHHHHH-----------HHTTC-C-CC-HHHHHHHHHHTTCCC------
T ss_pred -----h---hcCcEEEEeCCCcCCCCCCHHHHHHHHH-----------HhcCC-c-hH-HHHHHHHHHHcCCCc------
Confidence 1 134567888876655443 566654421 11111 1 12 456788999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
. ++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 127 -----------~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 127 -----------L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp -----------T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred -----------C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6 778999999999999999999 999999985 789999999 5
Q ss_pred HHHhcccEEEEEeeCCeE
Q 019048 281 DLLSLTDRARIRTYLGEL 298 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~i 298 (347)
.+..+||++ + +..|+|
T Consensus 195 ~~~~~~d~v-~-~~~~~~ 210 (214)
T 1sgw_A 195 SYCDVNENL-H-KYSTKI 210 (214)
T ss_dssp TTSSEEEEG-G-GGBC--
T ss_pred HHHHhCCEE-E-EeCCcc
Confidence 788899999 4 777765
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.3e-37 Score=282.36 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=135.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+.+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 5 ~~l~~~~l~~~y~~~~-~~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~----- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGG-TPV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR----- 70 (229)
T ss_dssp EEEEEEEEEECSSTTS-CCS---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECSC-----
T ss_pred ceEEEEEEEEEeCCCC-cee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECCE-----
Confidence 4699999999996322 234 777999999999999999999999999999999999 99999999982
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
++|++|+...+...+.+| +.++.. ... .++.++++.+++.+.+...++
T Consensus 71 ------------i~~v~q~~~~~~~tv~en-----------l~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~- 118 (229)
T 2pze_A 71 ------------ISFCSQFSWIMPGTIKEN-----------IIFGVS----YDE----YRYRSVIKACQLEEDISKFAE- 118 (229)
T ss_dssp ------------EEEECSSCCCCSBCHHHH-----------HHTTSC----CCH----HHHHHHHHHTTCHHHHTTSTT-
T ss_pred ------------EEEEecCCcccCCCHHHH-----------hhccCC----cCh----HHHHHHHHHhCcHHHHHhCcc-
Confidence 367777765443334444 433221 011 112334444554321100000
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
...+..++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 119 -----~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 119 -----KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193 (229)
T ss_dssp -----GGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred -----cccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH
Confidence 001123455789999999999999999 999999763 789999999 344
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
..||++++ |++|++++.|++++++..
T Consensus 194 -~~~d~v~~-l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 194 -KKADKILI-LHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp -HHCSEEEE-EETTEEEEEECHHHHHTC
T ss_pred -HhCCEEEE-EECCEEEEECCHHHHHhc
Confidence 45999975 999999999999988764
No 44
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=282.93 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=133.2
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+.+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 2 ~~l~~~~l~~~y~~~~-~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~----- 67 (237)
T 2cbz_A 2 NSITVRNATFTWARSD-PPT---LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS----- 67 (237)
T ss_dssp CCEEEEEEEEESCTTS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECSC-----
T ss_pred CeEEEEEEEEEeCCCC-Cce---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCE-----
Confidence 3699999999996321 234 777999999999999999999999999999999999 99999999982
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHH---HHHHCCCCcccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC---KAHKIGCEPSVIRK 226 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~---~l~~~gl~~~~~~~ 226 (347)
++|++|+...+...+.+| +.++... ..... +++.+ +++.+++.+.-
T Consensus 68 ------------i~~v~Q~~~~~~~tv~en-----------l~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~--- 116 (237)
T 2cbz_A 68 ------------VAYVPQQAWIQNDSLREN-----------ILFGCQL----EEPYY-RSVIQACALLPDLEILPSG--- 116 (237)
T ss_dssp ------------EEEECSSCCCCSEEHHHH-----------HHTTSCC----CTTHH-HHHHHHTTCHHHHTTSTTG---
T ss_pred ------------EEEEcCCCcCCCcCHHHH-----------hhCcccc----CHHHH-HHHHHHHhhHHHHHhcccc---
Confidence 367777754322224444 4332210 11111 11111 12223322100
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC------------------CCeEEEEec
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tiIiiTH 279 (347)
..+.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 117 ---------~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH 187 (237)
T 2cbz_A 117 ---------DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187 (237)
T ss_dssp ---------GGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECS
T ss_pred ---------ccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 00124678899999999999999999 999999652 689999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.+ ..||++++ |++|++++.|++++++..
T Consensus 188 ~~~~~-~~~d~v~~-l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 188 SMSYL-PQVDVIIV-MSGGKISEMGSYQELLAR 218 (237)
T ss_dssp CSTTG-GGSSEEEE-EETTEEEEEECHHHHHHH
T ss_pred ChHHH-HhCCEEEE-EeCCEEEEeCCHHHHhhc
Confidence 344 57999975 999999999999887653
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.8e-37 Score=340.12 Aligned_cols=226 Identities=12% Similarity=0.127 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHhhhhhhhc---------cCCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHH
Q 019048 48 RRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 118 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKST 118 (347)
.....|+.++++..++... .....|+++||+|+|+.+...++ |+|+||+|++||++||||||||||||
T Consensus 355 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 355 RGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVALVGNSGCGKST 431 (1284)
T ss_dssp HHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc---eecceEEEcCCCEEEEECCCCCCHHH
Confidence 3455677777765543211 01235999999999975332234 67799999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc
Q 019048 119 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 198 (347)
Q Consensus 119 Llk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~ 198 (347)
|+++|+|+++ |++|+|.++|+++. .+...+.+...++|+|++.++..++.+|+.++..
T Consensus 432 l~~ll~g~~~-----~~~G~i~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-- 489 (1284)
T 3g5u_A 432 TVQLMQRLYD-----PLDGMVSIDGQDIR---------------TINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-- 489 (1284)
T ss_dssp HHHHTTTSSC-----CSEEEEEETTEEGG---------------GSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS--
T ss_pred HHHHHhCCCC-----CCCeEEEECCEEHH---------------hCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC--
Confidence 9999999999 99999999999986 1222233333444455554444456666665532
Q ss_pred cCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC
Q 019048 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 269 (347)
Q Consensus 199 ~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 269 (347)
... .+++.++++..++.+.+...++++.+.|++ .+.+||||||||++||||| ||||++||
T Consensus 490 -~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~------~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD 558 (1284)
T 3g5u_A 490 -DVT----MDEIEKAVKEANAYDFIMKLPHQFDTLVGE------RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558 (1284)
T ss_dssp -SCC----HHHHHHHHHHTTCHHHHHHSTTGGGCCCSS------SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSC
T ss_pred -CCC----HHHHHHHHHHhCcHHHHHhccccccccccC------CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 111 234566677777766555555666555544 4679999999999999999 99999998
Q ss_pred C---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 270 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 270 ~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
. |+|+|+||| -.....||+|++ |++|++++.|++++++..
T Consensus 559 ~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~v-l~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 559 TESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAG-FDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEE-CSSSCCCCEECHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE-EECCEEEEECCHHHHHhC
Confidence 3 899999999 334455999975 999999999999998765
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.1e-36 Score=334.87 Aligned_cols=228 Identities=11% Similarity=0.105 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhhhhhhhc---------cCCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHH
Q 019048 48 RRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 118 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKST 118 (347)
.....|+.++++..++... .....|+++||+|+|+.+....+ |+|+||+|++||++||+|||||||||
T Consensus 998 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~---l~~vsl~i~~Ge~v~ivG~sGsGKST 1074 (1284)
T 3g5u_A 998 TVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV---LQGLSLEVKKGQTLALVGSSGCGKST 1074 (1284)
T ss_dssp HHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS---BSSCCEEECSSSEEEEECSSSTTHHH
T ss_pred HHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee---ecceeEEEcCCCEEEEECCCCCCHHH
Confidence 3455677777665443211 01235999999999975432345 55599999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc
Q 019048 119 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 198 (347)
Q Consensus 119 Llk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~ 198 (347)
|+++|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+. .++.+|+.++....
T Consensus 1075 l~~~l~g~~~-----p~~G~I~i~g~~i~~~~---~-~~~r~~i~~v~Q~~~l~~-----------~ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1075 VVQLLERFYD-----PMAGSVFLDGKEIKQLN---V-QWLRAQLGIVSQEPILFD-----------CSIAENIAYGDNSR 1134 (1284)
T ss_dssp HHHHHTTSSC-----CSEEEEESSSSCTTSSC---H-HHHTTSCEEEESSCCCCS-----------SBHHHHHTCCCSSC
T ss_pred HHHHHhcCcC-----CCCCEEEECCEEcccCC---H-HHHHhceEEECCCCcccc-----------ccHHHHHhccCCCC
Confidence 9999999999 99999999999986211 0 112445666666654443 34555655443210
Q ss_pred cCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC
Q 019048 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 269 (347)
Q Consensus 199 ~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 269 (347)
... .+++.++++..++.+.+...++++.+.|++. +.+||||||||++||||| ||||++||
T Consensus 1135 -~~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge~------G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD 1203 (1284)
T 3g5u_A 1135 -VVS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGDK------GTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203 (1284)
T ss_dssp -CCC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT------SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCC
T ss_pred -CCC----HHHHHHHHHHhCcHHHHHhCccccccccCCC------CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 111 2345566777787766666677777777654 568999999999999999 99999998
Q ss_pred C---------------CCeEEEEech-HHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 270 D---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 270 ~---------------g~tiIiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
. |+|+|+|||+ .....||||++ |++|++++.|++++++..
T Consensus 1204 ~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~v-l~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV-IQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEE-EETBEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEE-EECCEEEEECCHHHHHhC
Confidence 3 8999999992 33466999975 999999999999999875
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.8e-35 Score=276.92 Aligned_cols=182 Identities=17% Similarity=0.150 Sum_probs=119.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||++.|. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 39 ~~l~~~~l~~~~~-----~v---l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~----- 100 (290)
T 2bbs_A 39 DSLSFSNFSLLGT-----PV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR----- 100 (290)
T ss_dssp -----------CC-----CS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCSC-----
T ss_pred ceEEEEEEEEcCc-----eE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCE-----
Confidence 5799999998642 23 777999999999999999999999999999999999 99999999872
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
++|++|+...+...+.+| +. +.. ... ..+.++++.+++...+...++.
T Consensus 101 ------------i~~v~Q~~~l~~~tv~en-----------l~-~~~----~~~----~~~~~~~~~~~l~~~l~~~~~~ 148 (290)
T 2bbs_A 101 ------------ISFCSQNSWIMPGTIKEN-----------II-GVS----YDE----YRYRSVIKACQLEEDISKFAEK 148 (290)
T ss_dssp ------------EEEECSSCCCCSSBHHHH-----------HH-TTC----CCH----HHHHHHHHHTTCHHHHHTSTTG
T ss_pred ------------EEEEeCCCccCcccHHHH-----------hh-Ccc----cch----HHHHHHHHHhChHHHHHhcccc
Confidence 367777654443234444 33 211 011 1223344555554311000000
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
..+.+++.+.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 149 ------~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~ 222 (290)
T 2bbs_A 149 ------DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 222 (290)
T ss_dssp ------GGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred ------ccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 00112445689999999999999999 999999763 789999999 344
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
..||++++ |++|++++.|++++++.
T Consensus 223 -~~~d~i~~-l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 223 -KKADKILI-LHEGSSYFYGTFSELQN 247 (290)
T ss_dssp -HHSSEEEE-EETTEEEEEECHHHHHH
T ss_pred -HcCCEEEE-EECCeEEEeCCHHHHhh
Confidence 46999975 99999999999988764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=1.7e-31 Score=276.57 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=140.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++++++|+++.|++ .. |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~~--~~-----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~------ 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS--FK-----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWD------ 416 (607)
T ss_dssp CEEEEECCEEEECSS--CE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCCC------
T ss_pred ceEEEEeceEEEecc--eE-----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEEe------
Confidence 357999999999964 13 677999999999999999999999999999999999 999998762
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
..++|++|+......+ |.++...... . .....+++.++++.+++.+
T Consensus 417 -----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~----------~------~~~~~~~~~~~l~~~~l~~------ 463 (607)
T 3bk7_A 417 -----------LTVAYKPQYIKAEYEGTVYELLSKIDS----------S------KLNSNFYKTELLKPLGIID------ 463 (607)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHH----------H------HHHCHHHHHHTHHHHTCTT------
T ss_pred -----------eEEEEEecCccCCCCCcHHHHHHhhhc----------c------CCCHHHHHHHHHHHcCCch------
Confidence 1347888876443322 4443322100 0 0011345778899999986
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
.+++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 464 -----------~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 464 -----------LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp -----------TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999983 789999999
Q ss_pred hHHHhcccEEEEEeeC--CeEeecCCcccccC
Q 019048 280 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 309 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 309 (347)
+++..+|||+++ |++ |+++..|++++++.
T Consensus 533 ~~~~~~adrv~v-l~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 533 LMIDYVSDRLIV-FEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEE-EcCCcceEEecCCHHHHHh
Confidence 578889999975 886 78888899887754
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.6e-31 Score=273.41 Aligned_cols=178 Identities=13% Similarity=0.155 Sum_probs=139.2
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++++++|+++.|++ .. |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~------ 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS--FR-----LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEWD------ 346 (538)
T ss_dssp CEEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCCC------
T ss_pred CeEEEEeeEEEEECC--EE-----EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC------
Confidence 357999999999964 22 677999999999999999999999999999999999 999999751
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
..++|++|+......+ |.++...... . . ....+.+.++++.+++.+
T Consensus 347 -----------~~i~~v~Q~~~~~~~~tv~~~~~~~~~----------~-~-----~~~~~~~~~~l~~~~l~~------ 393 (538)
T 1yqt_A 347 -----------LTVAYKPQYIKADYEGTVYELLSKIDA----------S-K-----LNSNFYKTELLKPLGIID------ 393 (538)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHH----------H-H-----HTCHHHHHHTTTTTTCGG------
T ss_pred -----------ceEEEEecCCcCCCCCcHHHHHHhhhc----------c-C-----CCHHHHHHHHHHHcCChh------
Confidence 1347888876443222 4333221100 0 0 001245677899999976
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
..++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 394 -----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 394 -----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp -----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999983 889999999
Q ss_pred hHHHhcccEEEEEeeC--CeEeecCCcccccC
Q 019048 280 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 309 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 309 (347)
+++..+|||+++ |++ |+++..|++++++.
T Consensus 463 ~~~~~~~drv~v-l~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 463 LMIDYVSDRLMV-FEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEE-EeCCcceEeecCCHHHHHh
Confidence 578889999975 886 78888899887653
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.2e-31 Score=274.14 Aligned_cols=176 Identities=10% Similarity=0.064 Sum_probs=134.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++++++|+++.|++ .. |+.+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++..+
T Consensus 267 ~~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~i-- 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD--FQ-----LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQIL-- 332 (538)
T ss_dssp CEEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCCCE--
T ss_pred cceEEEcceEEEECC--EE-----EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCeee--
Confidence 357999999999964 23 666899999999999999999999999999999999 9999999876543
Q ss_pred CccccccccCCCccceeeccccccc-cchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~-~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
++.+|+..... ..|.+++... .. .... .....+.++++.+++.+
T Consensus 333 --------------~~~~q~~~~~~~~tv~~~l~~~-----------~~--~~~~--~~~~~~~~~l~~~~l~~------ 377 (538)
T 3ozx_A 333 --------------SYKPQRIFPNYDGTVQQYLENA-----------SK--DALS--TSSWFFEEVTKRLNLHR------ 377 (538)
T ss_dssp --------------EEECSSCCCCCSSBHHHHHHHH-----------CS--STTC--TTSHHHHHTTTTTTGGG------
T ss_pred --------------EeechhcccccCCCHHHHHHHh-----------hh--hccc--hhHHHHHHHHHHcCCHH------
Confidence 45665543322 2255544321 00 0000 11234677888899876
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
.+++++.+|||||||||+||||| ||||++||. |+|||+|||
T Consensus 378 -----------~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 378 -----------LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp -----------CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999983 899999999
Q ss_pred hHHHhcccEEEEEeeC--CeEeecCCcc
Q 019048 280 GDLLSLTDRARIRTYL--GELLGIPPAK 305 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~--G~iv~~g~~~ 305 (347)
+.+..+||||++ |++ |.....+++.
T Consensus 447 ~~~~~~aDri~v-l~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 447 SIHDYIADRIIV-FKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCE
T ss_pred HHHHHhCCEEEE-EeCCcceeccCCChH
Confidence 578899999975 886 4444455543
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=3.4e-30 Score=277.02 Aligned_cols=209 Identities=16% Similarity=0.202 Sum_probs=131.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|++|+|+++. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|. ...
T Consensus 669 ~~mL~v~nLs~~Y~g~~-~~i---L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~I 738 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS-KPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CRI 738 (986)
T ss_dssp SEEEEEEEEEECCTTCS-SCS---EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CCE
T ss_pred CceEEEEeeEEEeCCCC-cee---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cce
Confidence 35899999999996421 123 777999999999999999999999999999999999 99999999863 111
Q ss_pred Cccccccc------------------c---------CCCccceeecc----------------------------ccccc
Q 019048 149 TYFLQEYT------------------I---------PRGSNSFSLYD----------------------------TRSLS 173 (347)
Q Consensus 149 ~~~~~~~~------------------~---------~r~~~~~~~~~----------------------------~~~~~ 173 (347)
++..|... + .+....+...+ ...+.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 11111100 0 00000000000 00000
Q ss_pred -cc-hhhhhHhhH-----HHHHhhhhhhhh------------------hccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 174 -DD-ASDNINMIK-----LWIMEGVRHGEL------------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 174 -~~-v~qn~~~~~-----~~v~~~v~~~~~------------------~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.+ +.+|+.+.. .++.+|+.++.. ......+...++++.++++.+||....
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~----- 893 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI----- 893 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH-----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh-----
Confidence 00 111111100 000011000000 000000111245678899999997521
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHHh
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~~ 284 (347)
..++++.+||||||||++||||| ||||++||. +.|||+||| +++..
T Consensus 894 ----------~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~ 963 (986)
T 2iw3_A 894 ----------VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKN 963 (986)
T ss_dssp ----------HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTT
T ss_pred ----------hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHH
Confidence 14788999999999999999999 999999984 789999999 57788
Q ss_pred cccEEEEEeeCCeEeecCC
Q 019048 285 LTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~ 303 (347)
+||++++ |++|+++..|+
T Consensus 964 l~DrViv-L~~G~Iv~~G~ 981 (986)
T 2iw3_A 964 LTEEVWA-VKDGRMTPSGH 981 (986)
T ss_dssp TCCEEEC-CBTTBCCC---
T ss_pred hCCEEEE-EECCEEEEeCC
Confidence 9999975 99999998775
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.1e-30 Score=265.40 Aligned_cols=174 Identities=10% Similarity=0.061 Sum_probs=132.2
Q ss_pred eeeEEEeCCCceeeecCCceeeEEEecCC-----eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~i~~G-----e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+++++.|+... .+ ++++||++.+| |+++|+||||||||||+|+|+|+++ |++|+. +.
T Consensus 350 ~~~~~~y~~~~--~~---l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~------~~-- 411 (608)
T 3j16_B 350 ASRAFSYPSLK--KT---QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQD------IP-- 411 (608)
T ss_dssp SSSCCEECCEE--EE---CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCC------CC--
T ss_pred cceeEEecCcc--cc---cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcC------cc--
Confidence 67888886432 34 55599999999 7899999999999999999999999 999862 11
Q ss_pred ccccccccCCCccceeeccccccc-cchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~-~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
+..+++.+|+..... ..+.++.. .... ... ...+.+.++++.+++.+
T Consensus 412 ---------~~~i~~~~q~~~~~~~~tv~e~~~-----------~~~~--~~~---~~~~~~~~~l~~l~l~~------- 459 (608)
T 3j16_B 412 ---------KLNVSMKPQKIAPKFPGTVRQLFF-----------KKIR--GQF---LNPQFQTDVVKPLRIDD------- 459 (608)
T ss_dssp ---------SCCEEEECSSCCCCCCSBHHHHHH-----------HHCS--STT---TSHHHHHHTHHHHTSTT-------
T ss_pred ---------CCcEEEecccccccCCccHHHHHH-----------HHhh--ccc---ccHHHHHHHHHHcCChh-------
Confidence 123467777644322 22444321 1100 000 11235667899999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
++++++.+|||||||||+||||| ||||++||. |+|||+||| +
T Consensus 460 ----------~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 460 ----------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp ----------TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 46899999999999999999999 999999983 899999999 5
Q ss_pred HHHhcccEEEEEeeC--CeEeecCCcccccC
Q 019048 281 DLLSLTDRARIRTYL--GELLGIPPAKQIFD 309 (347)
Q Consensus 281 ~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 309 (347)
++..+|||+++ |++ |+++..|+|++++.
T Consensus 530 ~~~~~aDrviv-l~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 530 MATYLADKVIV-FEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp HHHHHCSEEEE-CEEETTTEEECCCCEEHHH
T ss_pred HHHHhCCEEEE-EeCCCCeEEecCChHHHhh
Confidence 78899999975 986 89999999988865
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=9.2e-31 Score=271.09 Aligned_cols=179 Identities=14% Similarity=0.097 Sum_probs=123.5
Q ss_pred CcEEE--------eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE--
Q 019048 70 SLTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-- 139 (347)
Q Consensus 70 ~~l~i--------~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I-- 139 (347)
.+|++ +||+++|+... .+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~ 150 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNA--FV---LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDND 150 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCC
T ss_pred ceEEEecCCccccCCeEEEECCCC--ee---eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCcccc
Confidence 35888 99999997532 24 66699 999999999999999999999999999999 999985
Q ss_pred -------EECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHH
Q 019048 140 -------TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 212 (347)
Q Consensus 140 -------~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~ 212 (347)
.++|.++.. ........+..+++.+|... +.+.++..++.+++... ...+++.+
T Consensus 151 ~~~~~~~~~~G~~~~~--~~~~~~~~~~~i~~~~q~~~-------~~~~~~~~tv~e~l~~~----------~~~~~~~~ 211 (607)
T 3bk7_A 151 SWDNVIRAFRGNELQN--YFERLKNGEIRPVVKPQYVD-------LLPKAVKGKVRELLKKV----------DEVGKFEE 211 (607)
T ss_dssp CHHHHHHHTTTSTHHH--HHHHHHHTSCCCEEECSCGG-------GGGGTCCSBHHHHHHHT----------CCSSCHHH
T ss_pred ccchhhheeCCEehhh--hhhhhhhhhcceEEeechhh-------hchhhccccHHHHhhhh----------HHHHHHHH
Confidence 233432210 00000000111223333211 11111001233333210 01234678
Q ss_pred HHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------
Q 019048 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 270 (347)
Q Consensus 213 ~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------- 270 (347)
+++.+||.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 212 ~L~~lgL~~-----------------~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 274 (607)
T 3bk7_A 212 VVKELELEN-----------------VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274 (607)
T ss_dssp HHHHTTCTT-----------------GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCc-----------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 899999987 46899999999999999999999 999999983
Q ss_pred ---CCeEEEEec--hHHHhcccEEEEEeeCC
Q 019048 271 ---DKPVVVVTH--GDLLSLTDRARIRTYLG 296 (347)
Q Consensus 271 ---g~tiIiiTH--~~~~~~aDri~v~l~~G 296 (347)
|+|||+||| +.+..+|||+++ |+++
T Consensus 275 ~~~g~tvIivsHdl~~~~~~adri~v-l~~~ 304 (607)
T 3bk7_A 275 ANEGKAVLVVEHDLAVLDYLSDVIHV-VYGE 304 (607)
T ss_dssp HHTTCEEEEECSCHHHHHHHCSEEEE-EESC
T ss_pred HhcCCEEEEEecChHHHHhhCCEEEE-ECCC
Confidence 899999999 577889999965 8754
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.5e-30 Score=266.30 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=119.5
Q ss_pred EEE-eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE---------EE
Q 019048 72 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 141 (347)
Q Consensus 72 l~i-~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I---------~~ 141 (347)
.++ +||+++|+... .+ |+++| +|++||++||+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA--FV---LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCcc--cc---ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 556 69999997532 24 66699 999999999999999999999999999999 999984 23
Q ss_pred CCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc
Q 019048 142 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 142 ~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
+|.++.. ........+..+++.+|...... .+...++.+++.. ....+++.++++.+|+..
T Consensus 90 ~g~~~~~--~~~~~~~~~~~~~~~~q~~~~~~-------~~~~~~v~e~~~~----------~~~~~~~~~~l~~lgl~~ 150 (538)
T 1yqt_A 90 RGNELQN--YFEKLKNGEIRPVVKPQYVDLIP-------KAVKGKVIELLKK----------ADETGKLEEVVKALELEN 150 (538)
T ss_dssp TTSTHHH--HHHHHHTTSCCCEEECSCGGGSG-------GGCCSBHHHHHHH----------HCSSSCHHHHHHHTTCTT
T ss_pred CCccHHH--HHHHHHHHhhhhhhhhhhhhhcc-------hhhhccHHHHHhh----------hhHHHHHHHHHHHcCCCh
Confidence 3432210 00000001112233333221111 0000012222221 011235678999999987
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 276 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIi 276 (347)
..++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 151 -----------------~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 151 -----------------VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp -----------------TTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45889999999999999999999 999999983 899999
Q ss_pred Eec--hHHHhcccEEEEEeeCC
Q 019048 277 VTH--GDLLSLTDRARIRTYLG 296 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G 296 (347)
||| +.+..+|||+++ |++|
T Consensus 214 vsHd~~~~~~~~dri~v-l~~~ 234 (538)
T 1yqt_A 214 VEHDLAVLDYLSDIIHV-VYGE 234 (538)
T ss_dssp ECSCHHHHHHHCSEEEE-EEEE
T ss_pred EeCCHHHHHHhCCEEEE-EcCc
Confidence 999 578889999975 8754
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=3e-29 Score=262.60 Aligned_cols=190 Identities=16% Similarity=0.223 Sum_probs=110.3
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHH---------------------HHHhhcccCCCCCCCC-------cEEEECCE
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFASER-------AQVTYNSS 144 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLl---------------------k~L~gl~~~~~~~p~~-------G~I~~~g~ 144 (347)
|+||||+|++||++||+||||||||||+ +++.++.. |+. |.|.+++.
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-----~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-----PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------CCCSEEESCCCEEEESSC
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----CCccceeccccceEecCc
Confidence 5669999999999999999999999998 88888888 774 45555554
Q ss_pred eCCCCccccccccCCCccceeecccccc------ccchh--hhhHhhH-HHHHhhhhhhhhh-ccCCChHHHH------H
Q 019048 145 VGDGTYFLQEYTIPRGSNSFSLYDTRSL------SDDAS--DNINMIK-LWIMEGVRHGELV-IRRSDSSSLR------N 208 (347)
Q Consensus 145 ~i~~~~~~~~~~~~r~~~~~~~~~~~~~------~~~v~--qn~~~~~-~~v~~~v~~~~~~-~~~~~~~~~~------~ 208 (347)
+.. ...++.+++++|....+ .++++ ++...+. .++.+|+.+.... .......... .
T Consensus 109 ~~~--------~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (670)
T 3ux8_A 109 TTS--------RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIR 180 (670)
T ss_dssp C-------------CCBHHHHTTCC-------------------------CC--------------------------CH
T ss_pred hhh--------ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHH
Confidence 332 11122334444332211 01111 1111111 1344444331100 0000000000 1
Q ss_pred HHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC-------
Q 019048 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD------- 270 (347)
Q Consensus 209 ~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~------- 270 (347)
....+++.+||.+. .+++++.+||||||||++||||| ||||++||.
T Consensus 181 ~~~~~l~~~gL~~~----------------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~ 244 (670)
T 3ux8_A 181 DRLGFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI 244 (670)
T ss_dssp HHHHHHHHTTCTTC----------------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHH
T ss_pred HHHHHHHHcCCchh----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHH
Confidence 12245888999763 14789999999999999999998 999999984
Q ss_pred ---------CCeEEEEech-HHHhcccEEEEEe------eCCeEeecCCcccccCCCC
Q 019048 271 ---------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 271 ---------g~tiIiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 312 (347)
|+|||+|||+ .....||++++ | ++|++++.|++++++..+.
T Consensus 245 ~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~-l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 245 ATLKSMRDLGNTLIVVEHDEDTMLAADYLID-IGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHCSEEEE-ECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE-ecccccccCCEEEEecCHHHHhcCch
Confidence 8999999993 34556999975 8 8999999999999987654
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=1.2e-27 Score=250.59 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=79.0
Q ss_pred HHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC-----
Q 019048 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 270 (347)
Q Consensus 208 ~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 270 (347)
+++.+++..+++... .+++++.+||||||||++||||| ||||++||.
T Consensus 521 ~~~~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 521 KRKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 456677888999652 24789999999999999999998 999999983
Q ss_pred -----------CCeEEEEech-HHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 271 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 271 -----------g~tiIiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
|+|||+|||+ .....||||++ | ++|++++.|+++++...+. .++..++..
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~-l~~~~g~~~G~i~~~g~~~~~~~~~~-~~~~~~~~~ 652 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVIKTADYIID-LGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLKP 652 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-EESSSGGGCCEEEEEECHHHHHTCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEE-ecCCcCCCCCEEEEecCHHHHHhCCc-cHHHHHHHH
Confidence 8999999993 44567999975 9 8999999999999976543 455555543
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-28 Score=255.30 Aligned_cols=176 Identities=15% Similarity=0.047 Sum_probs=114.3
Q ss_pred eeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcccccc
Q 019048 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY 155 (347)
Q Consensus 76 nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~ 155 (347)
|++++|+.+... |++++ ++++||++||+||||||||||+|+|+|+++ |++|+|..... . ....
T Consensus 82 ~~~~~Y~~~~~~-----l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~--~----~~~~ 144 (608)
T 3j16_B 82 HVTHRYSANSFK-----LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPE--W----QEII 144 (608)
T ss_dssp TEEEECSTTSCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSC--H----HHHH
T ss_pred CeEEEECCCcee-----ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccc--h----hhhh
Confidence 568888654333 44466 689999999999999999999999999999 99998731110 0 0000
Q ss_pred ccCCCccceeecccc-----cccc--chhhhhHhhHH-------HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc
Q 019048 156 TIPRGSNSFSLYDTR-----SLSD--DASDNINMIKL-------WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 156 ~~~r~~~~~~~~~~~-----~~~~--~v~qn~~~~~~-------~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
...+ +..++... .... +..+.....+. ++.+.+.. . . ....+++.++++.+||..
T Consensus 145 ~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~----~-~---~~~~~~~~~~l~~~gl~~ 213 (608)
T 3j16_B 145 KYFR---GSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL----R-M---EKSPEDVKRYIKILQLEN 213 (608)
T ss_dssp HHTT---TSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH----H-C---CSCHHHHHHHHHHHTCTG
T ss_pred heec---ChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh----h-h---hhHHHHHHHHHHHcCCcc
Confidence 0000 01111000 0000 00011110000 11111110 0 0 112356888999999987
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 276 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIi 276 (347)
.+++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 214 -----------------~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 276 (608)
T 3j16_B 214 -----------------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276 (608)
T ss_dssp -----------------GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE
T ss_pred -----------------hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 56999999999999999999999 999999873 899999
Q ss_pred Eec--hHHHhcccEEEEEeeCCe
Q 019048 277 VTH--GDLLSLTDRARIRTYLGE 297 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~ 297 (347)
||| +.+..+|||+++ |++|.
T Consensus 277 vtHdl~~~~~~~drv~v-l~~~~ 298 (608)
T 3j16_B 277 VEHDLSVLDYLSDFVCI-IYGVP 298 (608)
T ss_dssp ECSCHHHHHHHCSEEEE-EESCT
T ss_pred EeCCHHHHHHhCCEEEE-EeCCc
Confidence 999 578899999975 98765
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=4.8e-27 Score=252.62 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=126.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.|...|++++|++ ..+ |+++||+|++|++++|+||||||||||+|+|+| |+| +|.+..
T Consensus 435 ~L~~~~ls~~yg~---~~i---L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~~~--- 492 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KIL---LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFPTQ--- 492 (986)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCCCT---
T ss_pred eeEEeeEEEEECC---EEe---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCccc---
Confidence 4777799999974 234 677999999999999999999999999999995 111 222111
Q ss_pred cccccccCCCccceeecccc-ccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~-~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. ...++|+.|+.. .+..+ ++.+++.+ . ... . ++++.++++.+|+...
T Consensus 493 ---~----~~~~~~v~q~~~~~~~~l----------tv~e~l~~--~-~~~--~---~~~v~~~L~~lgL~~~------- 540 (986)
T 2iw3_A 493 ---E----ECRTVYVEHDIDGTHSDT----------SVLDFVFE--S-GVG--T---KEAIKDKLIEFGFTDE------- 540 (986)
T ss_dssp ---T----TSCEEETTCCCCCCCTTS----------BHHHHHHT--T-CSS--C---HHHHHHHHHHTTCCHH-------
T ss_pred ---c----ceeEEEEcccccccccCC----------cHHHHHHH--h-hcC--H---HHHHHHHHHHcCCChh-------
Confidence 0 001234444321 11111 23344432 1 111 1 5678889999999632
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHHhc
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~~~ 285 (347)
..++++.+||||||||++||||| ||||++||. |.|+|+||| +.+..+
T Consensus 541 ---------~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 541 ---------MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNV 611 (986)
T ss_dssp ---------HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHH
T ss_pred ---------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh
Confidence 45889999999999999999999 999999983 899999999 578899
Q ss_pred ccEEEEEeeCCeEe-ecCCcccccC
Q 019048 286 TDRARIRTYLGELL-GIPPAKQIFD 309 (347)
Q Consensus 286 aDri~v~l~~G~iv-~~g~~~~l~~ 309 (347)
||++++ |++|+++ ..|++++++.
T Consensus 612 adrii~-L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 612 CEYIIN-YEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEE-EETTEEEEEESCHHHHHH
T ss_pred CCEEEE-EECCeeecCCCCHHHHHh
Confidence 999975 9999997 5788877653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=3.9e-28 Score=248.28 Aligned_cols=174 Identities=16% Similarity=0.105 Sum_probs=115.5
Q ss_pred eeeEEEeCCCceeeecCCceeeEEE-ecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE-----------EEC
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYD-VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 142 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~-i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I-----------~~~ 142 (347)
++.+.+|+.+. ++-..|. +++||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 35788997654 3335554 45899999999999999999999999999 999988 455
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 143 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 143 g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
|.++.. ..+........+...+ .++.+.+.++..++.+++. ....++++.++++.+++..
T Consensus 71 g~~i~~--~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~l~----------~~~~~~~~~~~l~~l~l~~- 130 (538)
T 3ozx_A 71 GKEIYN--YFKELYSNELKIVHKI-------QYVEYASKFLKGTVNEILT----------KIDERGKKDEVKELLNMTN- 130 (538)
T ss_dssp TSTTHH--HHHHHHTTCCCEEEEC-------SCTTGGGTTCCSBHHHHHH----------HHCCSSCHHHHHHHTTCGG-
T ss_pred CeeHHH--HHHHHhhcccchhhcc-------chhhhhhhhccCcHHHHhh----------cchhHHHHHHHHHHcCCch-
Confidence 544320 0000000000000111 1111111111001111111 0111234667899999987
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEe
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 278 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiT 278 (347)
..++++.+||||||||++||||| ||||++||. |+|||+||
T Consensus 131 ----------------~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vs 194 (538)
T 3ozx_A 131 ----------------LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194 (538)
T ss_dssp ----------------GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ----------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 45899999999999999999999 999999873 89999999
Q ss_pred c--hHHHhcccEEEEEeeCCe
Q 019048 279 H--GDLLSLTDRARIRTYLGE 297 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~ 297 (347)
| +.+..+||++++ |++|.
T Consensus 195 Hdl~~~~~~~d~i~v-l~~~~ 214 (538)
T 3ozx_A 195 HDLIVLDYLTDLIHI-IYGES 214 (538)
T ss_dssp SCHHHHHHHCSEEEE-EEEET
T ss_pred eChHHHHhhCCEEEE-ecCCc
Confidence 9 678889999975 87653
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=8.4e-26 Score=242.31 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=81.4
Q ss_pred HHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC-----
Q 019048 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 270 (347)
Q Consensus 208 ~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 270 (347)
.++.++|+.+||... .+++++.+||||||||++||||| ||||+|||.
T Consensus 783 ~~~~~~L~~vGL~~~----------------~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~ 846 (916)
T 3pih_A 783 KRTLQVLHDVGLGYV----------------KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRK 846 (916)
T ss_dssp HHHHHHHHHTTGGGS----------------BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 456788999999752 24788999999999999999998 999999873
Q ss_pred -----------CCeEEEEech-HHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 271 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 271 -----------g~tiIiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
|.|||+|||+ .+...||+|++ | ++|+|++.|++++++..+ ++++..++.
T Consensus 847 L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIiv-Lgp~gg~~~G~Iv~~Gtpeel~~~~-~syt~~~l~ 913 (916)
T 3pih_A 847 LVEVLHRLVDRGNTVIVIEHNLDVIKNADHIID-LGPEGGKEGGYIVATGTPEEIAKNP-HSYTGRFLK 913 (916)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-EESSSGGGCCEEEEEESHHHHHSCT-TCHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE-ecCCCCCCCCEEEEEcCHHHHHhCC-chHHHHHHH
Confidence 8999999993 44566999975 9 899999999999999876 577777764
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=4.1e-25 Score=235.28 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=79.9
Q ss_pred HHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC-----
Q 019048 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 270 (347)
Q Consensus 208 ~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 270 (347)
+++.++++.+||.... +++++.+||||||||++||++| ||||++||.
T Consensus 708 ~~~~~~L~~~gL~~~~----------------l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 708 FRALDTLREVGLGYLR----------------LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp HHHHHHHHHTTCTTSB----------------TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCccc----------------ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 4678899999997621 3788999999999999999999 999999873
Q ss_pred -----------CCeEEEEec--hHHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 271 -----------DKPVVVVTH--GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 271 -----------g~tiIiiTH--~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
|.|||+||| +.+ ..||+|++ | ++|++++.|++++++..+. .++..++.
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~-L~p~~g~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 838 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLD-IGPGAGEDGGRLVAQGTPAEVAQAAG-SVTAPYLR 838 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE-ECSSSGGGCCSEEEEECHHHHTTCTT-CSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEE-ECCCCCCCCCEEEEEcCHHHHHhCch-hHHHHHHH
Confidence 899999999 455 78999975 9 7999999999999988765 45566553
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-28 Score=247.06 Aligned_cols=173 Identities=10% Similarity=-0.021 Sum_probs=128.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-E-EEECCEeC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSSVG 146 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~-I~~~g~~i 146 (347)
.++++++||++.|+ + +||++++|++++|+||||||||||+|+|+|++. |++| + |+++| +.
T Consensus 116 ~~mi~~~nl~~~y~---------~---vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg-~~ 177 (460)
T 2npi_A 116 HTMKYIYNLHFMLE---------K---IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINL-DP 177 (460)
T ss_dssp CTHHHHHHHHHHHH---------H---HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEEC-CT
T ss_pred cchhhhhhhhehhh---------c---CceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcC-Cc
Confidence 46788999988884 2 899999999999999999999999999999999 9999 8 99987 11
Q ss_pred CCCccccccccCCCccceeeccccccc---cc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLS---DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~---~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
++.+++++|+...+. .+ +.+|. ++........ ..+++.++++.+|+..
T Consensus 178 ------------~~~i~~vpq~~~l~~~~~~~tv~eni------------~~~~~~~~~~---~~~~~~~ll~~~gl~~- 229 (460)
T 2npi_A 178 ------------QQPIFTVPGCISATPISDILDAQLPT------------WGQSLTSGAT---LLHNKQPMVKNFGLER- 229 (460)
T ss_dssp ------------TSCSSSCSSCCEEEECCSCCCTTCTT------------CSCBCBSSCC---SSCCBCCEECCCCSSS-
T ss_pred ------------cCCeeeeccchhhcccccccchhhhh------------cccccccCcc---hHHHHHHHHHHhCCCc-
Confidence 234567777654321 11 23332 2211100100 1123445677788876
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHH--h-------------ch-hccCCCC------------CCeE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT--F-------------NC-PYLSFRD------------DKPV 274 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArA--L-------------DE-Pts~Ld~------------g~ti 274 (347)
..+ +.+||||||||++|||| | || ||++||. +.|+
T Consensus 230 ----------------~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tv 291 (460)
T 2npi_A 230 ----------------INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNI 291 (460)
T ss_dssp ----------------GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCE
T ss_pred ----------------ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCE
Confidence 333 88999999999999999 4 99 9999974 8899
Q ss_pred EEEec--h------HHHhcccE-----EEEEee-CCeEeecCCcccc
Q 019048 275 VVVTH--G------DLLSLTDR-----ARIRTY-LGELLGIPPAKQI 307 (347)
Q Consensus 275 IiiTH--~------~~~~~aDr-----i~v~l~-~G~iv~~g~~~~l 307 (347)
|+||| + .+..+||+ +++ |+ +|+++ .|+++++
T Consensus 292 iiVth~~~~~l~~~~~~~~~dr~~~~~vi~-l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 292 MLVLCSETDPLWEKVKKTFGPELGNNNIFF-IPKLDGVS-AVDDVYK 336 (460)
T ss_dssp EEEECCSSCTHHHHHHHHHHHHHCGGGEEE-ECCCTTCC-CCCHHHH
T ss_pred EEEEccCchhhhHHHHHHhcccccCCEEEE-EeCCCcEE-ECCHHHH
Confidence 99999 5 55689999 965 98 99999 8887654
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=3e-24 Score=229.76 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=78.0
Q ss_pred HHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC------
Q 019048 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 270 (347)
Q Consensus 209 ~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~------ 270 (347)
++.++++.+||... .+++++.+||||||||++||++| ||||+|||.
T Consensus 824 ~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l 887 (972)
T 2r6f_A 824 RKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARL 887 (972)
T ss_dssp HHHHHHHHTTCSSS----------------BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcc----------------cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHH
Confidence 45678999999762 24788999999999999999998 999999873
Q ss_pred ----------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 271 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 271 ----------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
|.|||+||| -.....||++++ | ++|++++.|++++++..+. .++..++.
T Consensus 888 ~~lL~~L~~~G~TVIvisHdl~~i~~aDrIiv-L~p~gG~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 953 (972)
T 2r6f_A 888 LDVLHRLVDNGDTVLVIEHNLDVIKTADYIID-LGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLK 953 (972)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-ECSSSTTSCCSEEEEESHHHHHTCTT-CHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE-EcCCCCCCCCEEEEecCHHHHHhCch-hHHHHHHH
Confidence 899999999 234468999975 9 7899999999999987654 45555543
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.89 E-value=1.3e-23 Score=225.47 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=77.5
Q ss_pred HHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC------
Q 019048 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 270 (347)
Q Consensus 209 ~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~------ 270 (347)
++.++++.+||... .+++++.+||||||||++||++| ||||+|||.
T Consensus 842 ~~~~~L~~lgL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l 905 (993)
T 2ygr_A 842 RYLRTLVDVGLGYV----------------RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKL 905 (993)
T ss_dssp HHHHHHHHTTGGGS----------------BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcc----------------cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHH
Confidence 45678999999752 14788999999999999999999 999999873
Q ss_pred ----------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 271 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 271 ----------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
|.|||+||| -.....||++++ | ++|++++.|++++++..+. .++..++.
T Consensus 906 ~~lL~~L~~~G~TVIvisHdl~~i~~aDrIiv-L~p~gg~~~G~Iv~~G~~~el~~~~~-~~t~~~l~ 971 (993)
T 2ygr_A 906 LNVINGLVDKGNTVIVIEHNLDVIKTSDWIID-LGPEGGAGGGTVVAQGTPEDVAAVPA-SYTGKFLA 971 (993)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-EESSSTTSCSEEEEEECHHHHHHCTT-CHHHHHHG
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE-ECCCcCCCCCEEEEecCHHHHHhCCH-HHHHHHHH
Confidence 899999999 234468999975 9 7899999999999987654 44555443
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=6.8e-23 Score=201.63 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHh-----------chhccCCCC---------------CCeEEEEec-hHHHhcccEEEEEe----eC
Q 019048 247 SDVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT----YL 295 (347)
Q Consensus 247 LSgGqrQRv~IArAL-----------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l----~~ 295 (347)
||||||||++||++| ||||++||. |.|||+||| ..+..+||++++ | ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~-l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK-VEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE-EEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE-EEEeccC
Confidence 699999999999998 999999873 799999999 455678999975 9 89
Q ss_pred CeEeec
Q 019048 296 GELLGI 301 (347)
Q Consensus 296 G~iv~~ 301 (347)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998765
No 66
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.85 E-value=7.5e-25 Score=209.03 Aligned_cols=177 Identities=14% Similarity=0.079 Sum_probs=114.3
Q ss_pred HHHHHHHHHhhhhhhhccC------CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHH
Q 019048 50 RDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 123 (347)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~------~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L 123 (347)
...|+.+++...++..... ..+|+++||+|.|+ . .+ |+++||+|++|++++|+||||||||||+++|
T Consensus 74 a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~--~--~v---L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 74 QALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF--I--NA---LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp HHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--H--HH---HHHHHHTCTTCSEEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--h--hh---hccceEEecCCCEEEEECCCCCcHHHHHHHH
Confidence 3446666665543321111 12489999999996 2 34 6779999999999999999999999999999
Q ss_pred hhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCCh
Q 019048 124 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 203 (347)
Q Consensus 124 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~ 203 (347)
+|++ +|+|.. ++.|+...+.+.+.+ +|+.++.. ..
T Consensus 147 ~gl~--------~G~I~~----------------------~v~q~~~lf~~ti~~----------~ni~~~~~----~~- 181 (305)
T 2v9p_A 147 IHFL--------GGSVLS----------------------FANHKSHFWLASLAD----------TRAALVDD----AT- 181 (305)
T ss_dssp HHHH--------TCEEEC----------------------GGGTTSGGGGGGGTT----------CSCEEEEE----EC-
T ss_pred hhhc--------CceEEE----------------------EecCccccccccHHH----------HhhccCcc----cc-
Confidence 9998 388843 222222222111111 13332211 01
Q ss_pred HHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh--chh---ccCCCC--CCeEEE
Q 019048 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCP---YLSFRD--DKPVVV 276 (347)
Q Consensus 204 ~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL--DEP---ts~Ld~--g~tiIi 276 (347)
. .+.+.++.+ |+. .++ +..|||||||| |||| +-| |++||. ...+..
T Consensus 182 ~----~~~~~i~~~-L~~-----------------gld--g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~~ 234 (305)
T 2v9p_A 182 H----ACWRYFDTY-LRN-----------------ALD--GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYLY 234 (305)
T ss_dssp H----HHHHHHHHT-TTG-----------------GGG--TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGGG
T ss_pred H----HHHHHHHHH-hHc-----------------cCC--ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHHH
Confidence 1 233445543 433 123 77999999999 9998 555 999994 223344
Q ss_pred Eec-hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 277 VTH-GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 277 iTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
+|| ..+...||+| + |++|++++.|+++++
T Consensus 235 ltH~~~~~~~aD~i-v-l~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 LHSRVQTFRFEQPC-T-DESGEQPFNITDADW 264 (305)
T ss_dssp GTTTEEEEECCCCC-C-CC---CCCCCCHHHH
T ss_pred HhCCHHHHHhCCEE-E-EeCCEEEEeCCHHHH
Confidence 699 4566789999 7 999999999999876
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=4.6e-20 Score=176.65 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=48.1
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEE-
Q 019048 240 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA- 289 (347)
Q Consensus 240 ~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri- 289 (347)
.+..+.+||+|||||++||+|| ||||++||. +.|+|++|| ..+..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~ 292 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLH 292 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEE
Confidence 4567789999999999999975 999999974 789999999 5677889986
Q ss_pred EEEeeCCeE
Q 019048 290 RIRTYLGEL 298 (347)
Q Consensus 290 ~v~l~~G~i 298 (347)
.++|.+|..
T Consensus 293 ~v~~~~g~s 301 (322)
T 1e69_A 293 GVTMVNGVS 301 (322)
T ss_dssp EEEESSSCE
T ss_pred EEEEeCCEE
Confidence 223777743
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.79 E-value=3.1e-20 Score=161.96 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=28.0
Q ss_pred eeEEEecCCeEEEEECCCCChHHHHHHHHh
Q 019048 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 95 ~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
++||+|++|++++|+||||||||||+|++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 499999999999999999999999999854
No 69
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.78 E-value=4.6e-22 Score=198.63 Aligned_cols=183 Identities=12% Similarity=0.094 Sum_probs=121.1
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE---eC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VG 146 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~---~i 146 (347)
++++++++++.|+.+ +.+ |+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.++|+ ++
T Consensus 130 ~~l~~~~v~~~~~tg--~~v---ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~ev 198 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRA---INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGREV 198 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHH---HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHHH
T ss_pred CceEEeccceecCCC--ceE---Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHHH
Confidence 568999999999643 345 5669 9999999999999999999999999999999 99999999997 33
Q ss_pred CCCccccc---cccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 147 DGTYFLQE---YTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 147 ~~~~~~~~---~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
.. .... ....++.+++++|+ +...+. .++.+++.+... ....-+ .
T Consensus 199 ~~--~~~~~~~~~~l~r~i~~v~q~----------~~~~~~~~~v~~~~~~~ae----------------~~~~~~--~- 247 (438)
T 2dpy_A 199 KD--FIENILGPDGRARSVVIAAPA----------DVSPLLRMQGAAYATRIAE----------------DFRDRG--Q- 247 (438)
T ss_dssp HH--HHHTTTHHHHHHTEEEEEECT----------TSCHHHHHHHHHHHHHHHH----------------HHHTTT--C-
T ss_pred HH--HHHhhccccccCceEEEEECC----------CCCHHHHHHHHHHHHHHHH----------------HHHhCC--C-
Confidence 20 0000 00011223344432 111222 244444432111 111101 1
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHhchh--ccCCCC--------------------CC-----eEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRD--------------------DK-----PVV 275 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArALDEP--ts~Ld~--------------------g~-----tiI 275 (347)
+ +..++|. ...||+|| ||++|| +.|| |++||. |. ||+
T Consensus 248 -----~-v~~~ld~-------l~~lS~g~-qrvslA--l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVl 311 (438)
T 2dpy_A 248 -----H-VLLIMDS-------LTRYAMAQ-REIALA--IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVL 311 (438)
T ss_dssp -----E-EEEEEEC-------HHHHHHHH-HHHHHH--TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEE
T ss_pred -----C-HHHHHHh-------HHHHHHHH-HHHHHH--hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEE
Confidence 1 1122232 44689999 999999 6566 788653 32 899
Q ss_pred EEechHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 276 VVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 276 iiTH~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
++||+.-..+||++++ |.+|+++..+++.++...|
T Consensus 312 v~tHdl~~~iad~v~~-l~dG~Ivl~~~~~~~~~~P 346 (438)
T 2dpy_A 312 TEGDDQQDPIADSARA-ILDGHIVLSRRLAEAGHYP 346 (438)
T ss_dssp CSSSCSCCHHHHHHHH-HSSEEEEECHHHHHTTCSS
T ss_pred EeCCCccchhhceEEE-EeCcEEEEeCCHHHccCCC
Confidence 9999533788999965 9999999999998887654
No 70
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.77 E-value=5.2e-19 Score=172.57 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=51.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHh---------------chhccCCCC----------------CCeEEEEec-hHHHhcccE
Q 019048 241 KSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDR 288 (347)
Q Consensus 241 ~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDr 288 (347)
++++.+||||||||++||+|| ||||++||+ |.|||+||| ......||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 678899999999999998886 999999984 799999999 344778999
Q ss_pred EEEEeeCCeEee
Q 019048 289 ARIRTYLGELLG 300 (347)
Q Consensus 289 i~v~l~~G~iv~ 300 (347)
+++ |++|++++
T Consensus 354 ~~~-l~~G~i~~ 364 (365)
T 3qf7_A 354 KLR-ITGGVVVN 364 (365)
T ss_dssp EEE-EETTEEC-
T ss_pred EEE-EECCEEEe
Confidence 965 99999975
No 71
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=2.3e-20 Score=177.79 Aligned_cols=157 Identities=11% Similarity=0.092 Sum_probs=104.5
Q ss_pred eeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccc-ccc-CCCccceeecccccc
Q 019048 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE-YTI-PRGSNSFSLYDTRSL 172 (347)
Q Consensus 95 ~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~-~~~-~r~~~~~~~~~~~~~ 172 (347)
.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++........ ... .+..+++++
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~------ 160 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV------ 160 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC------
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE------
Confidence 4899999999999999999999999999999999 999999999988642100000 000 011234444
Q ss_pred ccchhhhhH-hhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHH
Q 019048 173 SDDASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (347)
Q Consensus 173 ~~~v~qn~~-~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgG 250 (347)
|+.. +.+. ++.+++.++... ..+ ..+++.+|+.+ ..++++.+||
T Consensus 161 -----q~~~~~~~~~~v~e~l~~~~~~--~~d--------~~lldt~gl~~-----------------~~~~~~~eLS-- 206 (302)
T 3b9q_A 161 -----AEGDKAKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI-- 206 (302)
T ss_dssp -----CC--CCCHHHHHHHHHHHHHHT--TCS--------EEEECCCCCSS-----------------CCHHHHHHHH--
T ss_pred -----ecCCccCHHHHHHHHHHHHHHc--CCc--------chHHhcCCCCc-----------------chhHHHHHHH--
Confidence 4333 2222 455555443210 000 12345556654 2356777899
Q ss_pred HHHHHHHHHHh-----------chhccCCCC-----------CCeEEEEec-h----------HHHhcccEEEEEeeCCe
Q 019048 251 KQYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-G----------DLLSLTDRARIRTYLGE 297 (347)
Q Consensus 251 qrQRv~IArAL-----------DEPts~Ld~-----------g~tiIiiTH-~----------~~~~~aDri~v~l~~G~ 297 (347)
+||++||||| | ||++||. |.|+|++|| + .+....+.|. ++..|+
T Consensus 207 -kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~-~i~~Ge 283 (302)
T 3b9q_A 207 -ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVGE 283 (302)
T ss_dssp -HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEE-EEECSS
T ss_pred -HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEE-EEeCCC
Confidence 9999999998 9 9999873 899999999 2 2334566785 488887
Q ss_pred Ee
Q 019048 298 LL 299 (347)
Q Consensus 298 iv 299 (347)
.+
T Consensus 284 ~~ 285 (302)
T 3b9q_A 284 AV 285 (302)
T ss_dssp SG
T ss_pred Ch
Confidence 54
No 72
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.75 E-value=1.5e-20 Score=170.02 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=32.8
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~ 140 (347)
++|++++|+||||||||||+++|+|+ + |++|+|.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~ 53 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVS 53 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeee
Confidence 89999999999999999999999999 9 9999994
No 73
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.75 E-value=1.7e-20 Score=185.82 Aligned_cols=139 Identities=13% Similarity=0.059 Sum_probs=99.6
Q ss_pred ceeeEEEecCCe--------------------EEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccc
Q 019048 93 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (347)
Q Consensus 93 L~~isl~i~~Ge--------------------~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 152 (347)
|++|||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.+++.
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t~---- 109 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVTM---- 109 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC----C----
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecce----
Confidence 666999999999 999999999999999999999999 999999999876530
Q ss_pred cccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 153 QEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 153 ~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.+++++.. .+..+ +.+++.+. . . +.++.++++.+++.+.
T Consensus 110 ---------~~~v~q~~-~~~~ltv~D~~g~~-----------~----~------~~~~~~~L~~~~L~~~--------- 149 (413)
T 1tq4_A 110 ---------ERHPYKHP-NIPNVVFWDLPGIG-----------S----T------NFPPDTYLEKMKFYEY--------- 149 (413)
T ss_dssp ---------CCEEEECS-SCTTEEEEECCCGG-----------G----S------SCCHHHHHHHTTGGGC---------
T ss_pred ---------eEEecccc-ccCCeeehHhhccc-----------c----h------HHHHHHHHHHcCCCcc---------
Confidence 13555542 22222 34444221 0 0 1235678888888651
Q ss_pred eeechhhhhccCCCCCCHH--HHHHHHHHHHh-------------------chhccCCCC--------------------
Q 019048 232 FVVDGLAVLKSMEGDSDVE--KQYNQIVATTF-------------------NCPYLSFRD-------------------- 270 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgG--qrQRv~IArAL-------------------DEPts~Ld~-------------------- 270 (347)
+..+. ||+| |+||++||+|| ||||++||.
T Consensus 150 ---------~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 150 ---------DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp ---------SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 22333 9999 99999999998 999999874
Q ss_pred -C----CeEEEEec--h--HHHhcccEEE
Q 019048 271 -D----KPVVVVTH--G--DLLSLTDRAR 290 (347)
Q Consensus 271 -g----~tiIiiTH--~--~~~~~aDri~ 290 (347)
| .+++++|| . .+..+||++.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 1 35778888 3 3788888883
No 74
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.73 E-value=2.6e-20 Score=168.85 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=32.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
|++|||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~ 57 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSC 57 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eecc
Confidence 67799999999999999999999999999999976 4 88998 7654
No 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.73 E-value=1.1e-19 Score=162.97 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.4
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.| .+|++|++++|+||||||||||+|+|+|+++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 555 6999999999999999999999999999985
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.72 E-value=7.9e-20 Score=171.46 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=73.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccc-hhhhhHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMI 183 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~ 183 (347)
.++|+||||||||||+|+|+|+.. |++|+|.++|+++.. ...++.+++++|+...+..+ |.+++.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~-------~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPK-------TVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCC-------CCSCCEEEESCC----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCc-------ceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 589999999999999999999999 999999999987631 12234567788776555444 56665442
Q ss_pred HHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh--
Q 019048 184 KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 261 (347)
Q Consensus 184 ~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-- 261 (347)
...... ...+.+.+++. .. +.+.++.+|||||+||+++|||+
T Consensus 72 -----------~~~~~~----~~~~~i~~~~~----~~-----------------~~~~~~~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 72 -----------DQINNE----NCWEPIEKYIN----EQ-----------------YEKFLKEEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp -----------CCSBCT----TCSHHHHHHHH----HH-----------------HHHHHHHHSCTTCCSSCCCCSCCEE
T ss_pred -----------hhcccH----HHHHHHHHHHH----HH-----------------HHhhhHHhcCcccchhhhhheeeee
Confidence 111111 11122222222 11 34566779999999999999998
Q ss_pred ----chhccCCCC-----------CCeEEEEec
Q 019048 262 ----NCPYLSFRD-----------DKPVVVVTH 279 (347)
Q Consensus 262 ----DEPts~Ld~-----------g~tiIiiTH 279 (347)
|||+.+|++ ..++|+|.|
T Consensus 116 lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~ 148 (270)
T 3sop_A 116 LYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIA 148 (270)
T ss_dssp EEEECCCSSSCCHHHHHHHHHHHTTSEEEEEET
T ss_pred eEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEe
Confidence 999999763 577777777
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.71 E-value=3.1e-19 Score=173.81 Aligned_cols=157 Identities=11% Similarity=0.097 Sum_probs=104.4
Q ss_pred eeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcccccc-cc-CCCccceeecccccc
Q 019048 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY-TI-PRGSNSFSLYDTRSL 172 (347)
Q Consensus 95 ~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~-~~-~r~~~~~~~~~~~~~ 172 (347)
.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++......... .. .+..+++++|+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~---- 219 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE---- 219 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCS----
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEec----
Confidence 4899999999999999999999999999999999 9999999999886421000000 00 01223444443
Q ss_pred ccchhhhhH-hhH-HHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHH
Q 019048 173 SDDASDNIN-MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (347)
Q Consensus 173 ~~~v~qn~~-~~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgG 250 (347)
.. +.+ .++.+++.++... ..+ ..+++.+|+.+ ..++++.+||
T Consensus 220 -------~~~~~p~~tv~e~l~~~~~~--~~d--------~~lldt~Gl~~-----------------~~~~~~~eLS-- 263 (359)
T 2og2_A 220 -------GDKAKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI-- 263 (359)
T ss_dssp -------SSSCCHHHHHHHHHHHHHHT--TCS--------EEEEECCCCSS-----------------CCHHHHHHHH--
T ss_pred -------ccccChhhhHHHHHHHHHhC--CCH--------HHHHHhcCCCh-----------------hhhhHHHHHH--
Confidence 32 222 2455555433210 000 01344556554 2356677899
Q ss_pred HHHHHHHHHHh-----------chhccCCCC-----------CCeEEEEec-h----------HHHhcccEEEEEeeCCe
Q 019048 251 KQYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-G----------DLLSLTDRARIRTYLGE 297 (347)
Q Consensus 251 qrQRv~IArAL-----------DEPts~Ld~-----------g~tiIiiTH-~----------~~~~~aDri~v~l~~G~ 297 (347)
+||++||||| | ||++||. |.|+|++|| + .+...+..|. ++..|+
T Consensus 264 -kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~-~ig~Ge 340 (359)
T 2og2_A 264 -ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVGE 340 (359)
T ss_dssp -HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEE-EEECSS
T ss_pred -HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEE-EEeCCC
Confidence 9999999998 8 9999873 899999999 3 2334566785 488887
Q ss_pred Ee
Q 019048 298 LL 299 (347)
Q Consensus 298 iv 299 (347)
.+
T Consensus 341 ~~ 342 (359)
T 2og2_A 341 AV 342 (359)
T ss_dssp SG
T ss_pred Ch
Confidence 54
No 78
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.71 E-value=2.6e-20 Score=180.77 Aligned_cols=189 Identities=11% Similarity=0.025 Sum_probs=115.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++++++++++.|+.+ +.+ |+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.+.|++..
T Consensus 44 ~~i~~~~l~~~~~tg--~~a---ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~-- 110 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--VRA---IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGR-- 110 (347)
T ss_dssp CSTTCCCCCSEECCS--CHH---HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHH--
T ss_pred CCeeecccceecCCC--CEE---EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHH--
Confidence 468999999999743 345 5559 9999999999999999999999999999999 99999999886421
Q ss_pred ccccccccCCCccceeeccc--cccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDT--RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~--~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.. ... +++ +... .....++.+...... .++.. ....-.+.+.+...+ .
T Consensus 111 -ev--~~~----i~~-~~~~~~~~~v~~~~~~~~~~~----~r~~~----------~~~~~~~ae~~~~~~--~------ 160 (347)
T 2obl_A 111 -EV--NEF----LAL-LPQSTLSKCVLVVTTSDRPAL----ERMKA----------AFTATTIAEYFRDQG--K------ 160 (347)
T ss_dssp -HH--HHH----HTT-SCHHHHTTEEEEEECTTSCHH----HHHHH----------HHHHHHHHHHHHTTT--C------
T ss_pred -HH--HHH----HHh-hhhhhhhceEEEEECCCCCHH----HHHHH----------HHHHHHHHHHHHhcc--c------
Confidence 00 000 000 0000 000001111100000 00000 000000111111111 1
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHhchh-ccCCCC------------------CC-----eEEEEechHHH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP-YLSFRD------------------DK-----PVVVVTHGDLL 283 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArALDEP-ts~Ld~------------------g~-----tiIiiTH~~~~ 283 (347)
+ +..++ ..+..||+|| ||+++| +-+.| |+|||+ |. ||+++||+.-.
T Consensus 161 ~-vl~~l-------d~~~~lS~g~-r~v~la-l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~ 230 (347)
T 2obl_A 161 N-VLLMM-------DSVTRYARAA-RDVGLA-SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND 230 (347)
T ss_dssp E-EEEEE-------ETHHHHHHHH-HHHHHH-TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC
T ss_pred c-HHHHH-------hhHHHHHHHH-HHHHHH-cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC
Confidence 1 11122 3456899999 899999 33556 577642 55 89999995437
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 312 (347)
.+||++.+ |.+|+++.+++++++...|.
T Consensus 231 ~i~d~v~~-i~dG~Ivl~~~l~~~~~~Pa 258 (347)
T 2obl_A 231 PIGDEVRS-ILDGHIVLTRELAEENHFPA 258 (347)
T ss_dssp HHHHHHHH-HCSEEEEBCHHHHTTTCSSC
T ss_pred hhhhheEE-eeCcEEEEeCCHHHcCCCCC
Confidence 78999975 99999999999888765553
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.70 E-value=9.3e-21 Score=193.01 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=52.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEE-EecCCeEEEEECCCCChHHHHHHH--HhhcccCCCCCCCCcEEEECCEe
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl-~i~~Ge~~aIvGpnGsGKSTLlk~--L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++++.+++.+.++ + +.+ |+++|| .|++|++++|+||||||||||+++ ++|+++ |.+|.|+++|++
T Consensus 11 ~~~~~~~~~~~~~-g--~~~---Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~ 78 (525)
T 1tf7_A 11 NNSEHQAIAKMRT-M--IEG---FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEE 78 (525)
T ss_dssp ---CCSSCCEECC-C--CTT---HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSS
T ss_pred CCccccccccccC-C--chh---HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 3566677755443 3 345 666999 999999999999999999999999 789999 899999999876
No 80
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.69 E-value=3e-16 Score=167.20 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC----
Q 019048 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 270 (347)
Q Consensus 206 ~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~---- 270 (347)
+.+++. .|..+||... .+++.+.+|||||+|||+||++| ||||++||+
T Consensus 356 i~~rl~-~L~~vGL~~l----------------~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYL----------------GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp HHHHHH-HHHHTTCTTS----------------BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred HHHHHH-HHHhCCCCcC----------------CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 444444 5788999752 14889999999999999999999 999999973
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCC
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 312 (347)
|.|||+|+| -++...||+|++ | ++|+++..|++++++..+.
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~-lgpgaG~~~G~iv~~g~~~~~~~~~~ 478 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD-VGPEAGEKGGEILYSGPPEGLKHVPE 478 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE-ECSSSGGGCCSEEEEECGGGGGGCTT
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE-eCCCcccCCCEEEEecCHHHHHhchH
Confidence 899999999 345678999975 9 7999999999999987654
No 81
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.67 E-value=6.4e-18 Score=148.93 Aligned_cols=49 Identities=8% Similarity=-0.051 Sum_probs=40.9
Q ss_pred hccCCCCCCHHHHHHHHHHHH-----h---------ch--hccCCCC-------------CCeEEEEec-----hHHHhc
Q 019048 240 LKSMEGDSDVEKQYNQIVATT-----F---------NC--PYLSFRD-------------DKPVVVVTH-----GDLLSL 285 (347)
Q Consensus 240 ~~~~~~~LSgGqrQRv~IArA-----L---------DE--Pts~Ld~-------------g~tiIiiTH-----~~~~~~ 285 (347)
.++++.+||||||||++||+| + || ||++||. +.|+|++|| +.+..+
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHH
Confidence 477888999999999999996 6 99 9999863 677899986 467777
Q ss_pred ccE
Q 019048 286 TDR 288 (347)
Q Consensus 286 aDr 288 (347)
|+|
T Consensus 150 ~~r 152 (178)
T 1ye8_A 150 RRL 152 (178)
T ss_dssp HTC
T ss_pred Hhc
Confidence 877
No 82
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.67 E-value=4.9e-20 Score=176.33 Aligned_cols=170 Identities=10% Similarity=-0.084 Sum_probs=109.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEE-----------------------ecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYD-----------------------VPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~-----------------------i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
..|+++||++.|.. . +++++|. +++|+++||+||||||||||+++|+|+
T Consensus 42 ~~i~~~~v~~~y~p---~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 42 EQIDLLEVEEVYLP---L-----ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCCHHHHHHTHHH---H-----HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeehhhhhhh---H-----HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 46899999999942 2 3445553 899999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHH
Q 019048 127 FENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 206 (347)
Q Consensus 127 ~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~ 206 (347)
++ |+.|. ..+++++|+...+ +.++.+|+.+.. ....+....
T Consensus 114 l~-----~~~G~---------------------~~v~~v~qd~~~~-----------~~t~~e~~~~~~--~~g~~~~~d 154 (312)
T 3aez_A 114 LA-----RWDHH---------------------PRVDLVTTDGFLY-----------PNAELQRRNLMH--RKGFPESYN 154 (312)
T ss_dssp HH-----TSTTC---------------------CCEEEEEGGGGBC-----------CHHHHHHTTCTT--CTTSGGGBC
T ss_pred cc-----ccCCC---------------------CeEEEEecCccCC-----------cccHHHHHHHHH--hcCCChHHH
Confidence 99 87553 0224666654322 223444443211 011222233
Q ss_pred HHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC---C----
Q 019048 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---D---- 270 (347)
Q Consensus 207 ~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld---~---- 270 (347)
.+.+.++++.++ .. ..+.++..|||||+||+++|+|+ |||++.+| .
T Consensus 155 ~~~~~~~L~~l~-~~-----------------~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~ 216 (312)
T 3aez_A 155 RRALMRFVTSVK-SG-----------------SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSD 216 (312)
T ss_dssp HHHHHHHHHHHH-TT-----------------CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGG
T ss_pred HHHHHHHHHHhC-CC-----------------cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHH
Confidence 455667777776 33 12456779999999999999998 99999975 1
Q ss_pred --CCeEEEEec--h-HHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 271 --DKPVVVVTH--G-DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 271 --g~tiIiiTH--~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
+.+ |+|+| + ...++.+|.. .+.+++ ..+++.++.
T Consensus 217 ~~D~~-I~V~a~~~~~~~R~i~R~~-~~rd~~---~r~~~~~~~ 255 (312)
T 3aez_A 217 LFDFS-LYVDARIEDIEQWYVSRFL-AMRTTA---FADPESHFH 255 (312)
T ss_dssp GCSEE-EEEEECHHHHHHHHHHHHH-HHTTTG---GGSTTSTTG
T ss_pred hcCcE-EEEECCHHHHHHHHHHHHH-HHHhcc---ccCcchhhh
Confidence 444 55666 3 3445667763 255554 234445543
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.65 E-value=1.5e-15 Score=147.83 Aligned_cols=63 Identities=6% Similarity=-0.089 Sum_probs=54.8
Q ss_pred ccCCC-CCCHHHHHHHHHHHHh------------------chhccCCCC-------------CCeEEEEec-hHHHhccc
Q 019048 241 KSMEG-DSDVEKQYNQIVATTF------------------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTD 287 (347)
Q Consensus 241 ~~~~~-~LSgGqrQRv~IArAL------------------DEPts~Ld~-------------g~tiIiiTH-~~~~~~aD 287 (347)
++++. .||||||||++||++| ||||++||+ +.|+|++|| +. .||
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~---~~~ 335 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAP---GAA 335 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCT---TCS
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccc---cCC
Confidence 34555 6999999999999998 999999984 578999999 33 899
Q ss_pred EEEEEeeCCeEeecCCcccc
Q 019048 288 RARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 288 ri~v~l~~G~iv~~g~~~~l 307 (347)
++++ |++|+++..|+++++
T Consensus 336 ~i~~-l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLR-AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEE-EETTEEEECCCTTTS
T ss_pred EEEE-EECCEEEecCCHHHH
Confidence 9965 999999999999877
No 84
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.63 E-value=5.9e-18 Score=163.04 Aligned_cols=47 Identities=15% Similarity=0.345 Sum_probs=44.4
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
++++||++++|++++|+||||||||||+++|+|+++ |++|.|.++|.
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~ 207 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDT 207 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESS
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCe
Confidence 566999999999999999999999999999999999 99999999874
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.58 E-value=6.8e-16 Score=145.19 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=41.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EEEECC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNS 143 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I~~~g 143 (347)
|+++++.|++|++++|+||||||||||++.|++.+. +.+| .|.+.+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~ 71 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAM 71 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEE
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEe
Confidence 677999999999999999999999999999999998 8878 675544
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.57 E-value=3.6e-16 Score=159.17 Aligned_cols=126 Identities=13% Similarity=0.178 Sum_probs=86.9
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcE--EEECCEeCCCCccccccccCCCccceeecccccccc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ--VTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 174 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~--I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 174 (347)
+..|++|++++|+||||||||||+++++|+.. +. |. +++ .+++...
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-----~~-G~~vi~~-----------------------~~ee~~~--- 322 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC-----AN-KERAILF-----------------------AYEESRA--- 322 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-----TT-TCCEEEE-----------------------ESSSCHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----hC-CCCEEEE-----------------------EEeCCHH---
Confidence 44899999999999999999999999999998 64 53 222 2222110
Q ss_pred chhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHH
Q 019048 175 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 254 (347)
Q Consensus 175 ~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQR 254 (347)
.+.... . .+ ..+. .+ +...|+.. +.+.+|.+|||||+||
T Consensus 323 ------~l~~~~--~--~~------g~~~-------~~-~~~~g~~~-----------------~~~~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 323 ------QLLRNA--Y--SW------GMDF-------EE-MERQNLLK-----------------IVCAYPESAGLEDHLQ 361 (525)
T ss_dssp ------HHHHHH--H--TT------SCCH-------HH-HHHTTSEE-----------------ECCCCGGGSCHHHHHH
T ss_pred ------HHHHHH--H--Hc------CCCH-------HH-HHhCCCEE-----------------EEEeccccCCHHHHHH
Confidence 000000 0 00 1111 11 22344433 3467788999999999
Q ss_pred HHHHHHh---------chhccCCCC---------------------CCeEEEEechH------------HHhcccEEEEE
Q 019048 255 QIVATTF---------NCPYLSFRD---------------------DKPVVVVTHGD------------LLSLTDRARIR 292 (347)
Q Consensus 255 v~IArAL---------DEPts~Ld~---------------------g~tiIiiTH~~------------~~~~aDri~v~ 292 (347)
+++|+++ | ||++||. |+|+|++||+. +..+||++++
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~- 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIIL- 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE-
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEE-
Confidence 9999998 9 9999762 89999999943 4578999965
Q ss_pred eeCCe
Q 019048 293 TYLGE 297 (347)
Q Consensus 293 l~~G~ 297 (347)
|+.|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.55 E-value=1.3e-15 Score=165.65 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=41.0
Q ss_pred CcEEEee-----eEEEeCCCceeeecCCceeeEEEecC-------CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 70 SLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 70 ~~l~i~n-----l~~~y~~~~~~~~l~~L~~isl~i~~-------Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+++| |++.|..+..+ ++|++|++++ |++++|+||||||||||+|+| |++.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v-----~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFI-----PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC------CCCCC-----CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEecCCceE-----eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 5799999 99999433334 7779999987 999999999999999999999 9987
No 88
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.54 E-value=3.6e-15 Score=160.17 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=76.8
Q ss_pred HHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC--------
Q 019048 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD-------- 270 (347)
Q Consensus 210 i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~-------- 270 (347)
..++|..+||... .+++++.+|||||+||++||||| ||||++||+
T Consensus 444 ~~~~L~~vgL~~l----------------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~ 507 (916)
T 3pih_A 444 RLEFLVDVGLEYL----------------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK 507 (916)
T ss_dssp HHHHHHTTTCTTC----------------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHHHHHcCCccc----------------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH
Confidence 4567888999752 14789999999999999999999 999999874
Q ss_pred --------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHH
Q 019048 271 --------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 271 --------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
|.|||+||| ..+...||+|++ | ++|++++.|++++++..+....+..+
T Consensus 508 ~L~~L~~~G~TvivVtHd~~~~~~aD~ii~-lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~ 570 (916)
T 3pih_A 508 TLKKLRDLGNTVIVVEHDEEVIRNADHIID-IGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEY 570 (916)
T ss_dssp HHHHTTTTTCEEEEECCCHHHHHTCSEEEE-EESSSGGGCSEEEEEECHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhCCEEEE-EcCCcccCCCEEEEeechhhhhcCchhcchhhh
Confidence 899999999 344556999975 9 89999999999999887765554443
No 89
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.53 E-value=5.9e-14 Score=135.15 Aligned_cols=55 Identities=11% Similarity=0.011 Sum_probs=45.1
Q ss_pred hhccCCCCCCHHHHHH------HHHHHHh---------chhccCCCC----------------CCeEEEEec-hHHHhcc
Q 019048 239 VLKSMEGDSDVEKQYN------QIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 286 (347)
Q Consensus 239 ~~~~~~~~LSgGqrQR------v~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~~a 286 (347)
..++++.+|||||||| +++|++| ||||++||. +.|||+||| ..+...|
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~ 320 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhC
Confidence 3578899999999995 5666665 999999984 779999999 5677899
Q ss_pred cEEEEEee
Q 019048 287 DRARIRTY 294 (347)
Q Consensus 287 Dri~v~l~ 294 (347)
|++++ |.
T Consensus 321 d~~~~-l~ 327 (339)
T 3qkt_A 321 DHVIR-IS 327 (339)
T ss_dssp SEEEE-EE
T ss_pred CEEEE-EE
Confidence 99965 64
No 90
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=9.9e-17 Score=152.43 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=63.9
Q ss_pred eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhc-ccCCCCCCCCcEEEECCEeCCCCcccc
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTYFLQ 153 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl-~~~~~~~p~~G~I~~~g~~i~~~~~~~ 153 (347)
.||++.|+. ..+ +++++|+| +|+||||||||||+++|.|. +. |++| |.++|.++...
T Consensus 2 ~~l~~~~~~---~~~---l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~~t---- 59 (301)
T 2qnr_A 2 SNLPNQVHR---KSV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIERT---- 59 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECC---EEE---EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccCCc----
Confidence 478899975 235 55599998 99999999999999999997 66 8889 88888765411
Q ss_pred ccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeee
Q 019048 154 EYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 232 (347)
Q Consensus 154 ~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 232 (347)
.....+++.++.......+ +++++.+.... .+ ....+..+..+. .
T Consensus 60 ---~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~--~~------------~e~~~~l~~~l~------~----------- 105 (301)
T 2qnr_A 60 ---VQIEASTVEIEERGVKLRLTVVDTPGYGDAI--NC------------RDCFKTIISYID------E----------- 105 (301)
T ss_dssp --------CEEEEC---CCEEEEEEEEC-------------------------CTTHHHHHH------H-----------
T ss_pred ---ceEeeEEEEecCCCcccCcchhhhhhhhhhc--Cc------------HHHHHHHHHHHH------H-----------
Confidence 1112235555543333333 45554432110 00 000000011111 1
Q ss_pred eechhhhhccCCCCCCHHHHHHHHHHHHh-----chhccC-CCC-------------CCeEEEEech
Q 019048 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTF-----NCPYLS-FRD-------------DKPVVVVTHG 280 (347)
Q Consensus 233 vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----DEPts~-Ld~-------------g~tiIiiTH~ 280 (347)
..++++.++|||||||+.+|||+ ||||++ ||+ +.++|+.+|+
T Consensus 106 ------~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 106 ------QFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp ------HHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGG
T ss_pred ------HHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 23566778999999999999975 999985 763 5677777884
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.49 E-value=2.4e-14 Score=154.33 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHh-----------chhccCCCC------------------CCeEEEEec-hHHHhcccEEEEEeeC
Q 019048 246 DSDVEKQYNQIVATTF-----------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDRARIRTYL 295 (347)
Q Consensus 246 ~LSgGqrQRv~IArAL-----------DEPts~Ld~------------------g~tiIiiTH-~~~~~~aDri~v~l~~ 295 (347)
.+|+++.++..+|+++ ||||+|+|. |+|+|++|| ..+..+||++.. +.+
T Consensus 721 ~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~-v~n 799 (934)
T 3thx_A 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT-VNN 799 (934)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTT-EEE
T ss_pred hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccce-eEe
Confidence 4666666666666665 999999763 799999999 577789999964 999
Q ss_pred CeEeecCCcccc
Q 019048 296 GELLGIPPAKQI 307 (347)
Q Consensus 296 G~iv~~g~~~~l 307 (347)
|++...++.+++
T Consensus 800 g~v~~~~~~~~l 811 (934)
T 3thx_A 800 LHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEETTEE
T ss_pred eEEEEEecCCcE
Confidence 999987777665
No 92
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.49 E-value=6.7e-15 Score=140.21 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=39.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCC
Confidence 689999999999999999999999999 99999999998875
No 93
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.49 E-value=1.6e-15 Score=134.17 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=35.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~ 141 (347)
+|+++|++|.|+. .+ +++ |++.+|..++|+|+||||||||++.|+|........|+.|.+.+
T Consensus 3 ~l~~~~~~~~~~~--~~-----l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMSA--PD-----IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEEE--SS-----GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheeec--CC-----HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 5899999999962 23 666 88999999999999999999999999998710000177787654
No 94
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.48 E-value=4.7e-14 Score=143.27 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=46.7
Q ss_pred ccCCCCC-CHHHHHHHHHHHHh-----------chhccCCCC---------------CCeEEEEec-hHHHhcccEEEEE
Q 019048 241 KSMEGDS-DVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIR 292 (347)
Q Consensus 241 ~~~~~~L-SgGqrQRv~IArAL-----------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v~ 292 (347)
.+++..| ||||+||++||+|| ||||++||. |.|||+||| ..+..+||++++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~- 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK- 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEE-
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE-
Confidence 3567778 99999999999998 999999985 899999999 345567999975
Q ss_pred eeCCe
Q 019048 293 TYLGE 297 (347)
Q Consensus 293 l~~G~ 297 (347)
|+++.
T Consensus 470 ~~~~~ 474 (517)
T 4ad8_A 470 VEKQV 474 (517)
T ss_dssp EECCE
T ss_pred Eeccc
Confidence 86653
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.48 E-value=7.4e-15 Score=136.92 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=50.1
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC-CcEEEECCEeCC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGD 147 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~-~G~I~~~g~~i~ 147 (347)
++++++|++. . + |+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.++.
T Consensus 5 ~~~l~~l~~~--~---v-----l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 5 IPEFKKLGLP--D---K-----VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIE 65 (261)
T ss_dssp -CCGGGSSCC--T---H-----HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSCC
T ss_pred CCChHHCCCH--H---H-----HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcce
Confidence 4566777642 1 3 67798 99999999999999999999999999999 87 999999887653
No 96
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.46 E-value=4.5e-16 Score=151.30 Aligned_cols=175 Identities=9% Similarity=0.018 Sum_probs=96.3
Q ss_pred eeeEEEecC--CeEEEEECCCCChHHHHHHHHhhcccCCCCCCCC----cEEEEC----CEeCCCCccccccccCCCccc
Q 019048 94 TLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYN----SSVGDGTYFLQEYTIPRGSNS 163 (347)
Q Consensus 94 ~~isl~i~~--Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~----G~I~~~----g~~i~~~~~~~~~~~~r~~~~ 163 (347)
+.|+++|.+ |+.++|+||||||||||+++|+|+++ |++ |+|+++ |.++.
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~~~~~---------------- 217 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGGDEQA---------------- 217 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSSCTTS----------------
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCCCccc----------------
Confidence 459999999 99999999999999999999999999 888 887764 22210
Q ss_pred eeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHH---------HHHHHHHHHHCCCCcccccccceeeeee
Q 019048 164 FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL---------RNRMRCKAHKIGCEPSVIRKVNFVIFVV 234 (347)
Q Consensus 164 ~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~---------~~~i~~~l~~~gl~~~~~~~~~~~~~vv 234 (347)
+...+. ....+++|+..++..++.+|+.+..... ..... ...+..++.....+ +.++
T Consensus 218 ~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------lllL 283 (365)
T 1lw7_A 218 MQYSDY-PQMALGHQRYIDYAVRHSHKIAFIDTDF---ITTQAFCIQYEGKAHPFLDSMIKEYPFD----------VTIL 283 (365)
T ss_dssp SCTTTH-HHHHHHHHHHHHHHHHHCSSEEEESSCH---HHHHHHHHHHHSCCCHHHHHHHHHSCCS----------EEEE
T ss_pred CChhHH-HHHHHHHHHHHHHHHhccCCEEEEeCCc---hHHHHHHHHHcCCCCHHHHHHHhhcCCC----------EEEE
Confidence 111111 1123345555544445556654321100 00000 01111122111111 1234
Q ss_pred chhhh-hccCCCCCCHHHHHHHHHHHHhchhccCCCCCCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCccccc
Q 019048 235 DGLAV-LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 235 d~~~~-~~~~~~~LSgGqrQRv~IArALDEPts~Ld~g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
|+.+. .......+|+||+||.+++++|.+-... .+.++|+++| ....++++++.+ +++ ++..++++++.
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~--~~~~ililde~~~~~r~~~~i~~-i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK--YKVPYIEIESPSYLDRYNQVKAV-IEK--VLNEEEISELQ 354 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHG--GGCCCEEEECSSHHHHHHHHHHH-HHH--HTSCCCCSSCC
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHH-HHH--HhcccchhHhh
Confidence 55210 0011235899999999999998332210 1467999999 677788888854 654 56666666653
No 97
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.45 E-value=4.3e-15 Score=136.31 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=26.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|+++||++++|+++||+||||||||||+++|+|++.
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 555999999999999999999999999999999873
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.44 E-value=9e-14 Score=124.48 Aligned_cols=162 Identities=10% Similarity=0.053 Sum_probs=82.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCC--CCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccch
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK--FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 176 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~--~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v 176 (347)
-|++|++++|+||||||||||+++|+|++.... .....+.+++++.+.. .. .....+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-----------------~~----~~i~~~ 79 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----------------RP----ERIREI 79 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-----------------CH----HHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-----------------CH----HHHHHH
Confidence 689999999999999999999999999765100 0003346666654321 00 011123
Q ss_pred hhhhHhhHHHHHhhhhhhhhhccCCChHHH---HHHHHHHHHH-CC-CCcccccccceeeeeechhhhhccCCCCCCH--
Q 019048 177 SDNINMIKLWIMEGVRHGELVIRRSDSSSL---RNRMRCKAHK-IG-CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV-- 249 (347)
Q Consensus 177 ~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~---~~~i~~~l~~-~g-l~~~~~~~~~~~~~vvd~~~~~~~~~~~LSg-- 249 (347)
+|+..+.+.++.+|+.+... ...... .+.+.+++.. +. .. +.=+.++|+.+-. +..++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~llilDe~~~~--l~~~~~~~~ 146 (231)
T 4a74_A 80 AQNRGLDPDEVLKHIYVARA----FNSNHQMLLVQQAEDKIKELLNTDR-------PVKLLIVDSLTSH--FRSEYIGRG 146 (231)
T ss_dssp HHHTTSCHHHHHHTEEEEEC----CSHHHHHHHHHHHHHHHHHHTTSSS-------CEEEEEEETSSHH--HHHHSCSTT
T ss_pred HHHcCCCHHHHhhcEEEEec----CChHHHHHHHHHHHHHHHHhcccCC-------ceeEEEECChHHH--hccccCCCc
Confidence 44444444456666654321 111111 1223333331 11 11 1224678887532 2334554
Q ss_pred --HHHHHH--HHHHHhchhccCCCCCCeEEEEec--hH----HHhcccEEEEEeeCCe
Q 019048 250 --EKQYNQ--IVATTFNCPYLSFRDDKPVVVVTH--GD----LLSLTDRARIRTYLGE 297 (347)
Q Consensus 250 --GqrQRv--~IArALDEPts~Ld~g~tiIiiTH--~~----~~~~aDri~v~l~~G~ 297 (347)
+|||+. .+.+.|-+-.. ..|+|||++|| .. +..+||++++ |++|+
T Consensus 147 ~~~~r~~~~~~~~~~l~~~~~--~~g~tvi~vtH~~~~~g~~~~~~~d~~l~-l~~~~ 201 (231)
T 4a74_A 147 ALAERQQKLAKHLADLHRLAN--LYDIAVFVTNQVQANGGHILAHSATLRVY-LRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHTCEEEEEEECC---------CCSEEEE-EEECT
T ss_pred chhHHHHHHHHHHHHHHHHHH--HCCCeEEEEeecccCcchhhHhhceEEEE-EEecC
Confidence 344432 33333311000 13789999999 33 7788999964 88753
No 99
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.42 E-value=1e-12 Score=130.24 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHh-------------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEE
Q 019048 242 SMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 291 (347)
Q Consensus 242 ~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v 291 (347)
+.+..||||||||++||++| ||||++||. +.++|++|| ......||++++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 34556999999999999998 999999984 569999999 566778999976
Q ss_pred Eee
Q 019048 292 RTY 294 (347)
Q Consensus 292 ~l~ 294 (347)
+.
T Consensus 409 -~~ 410 (430)
T 1w1w_A 409 -VY 410 (430)
T ss_dssp -EE
T ss_pred -EE
Confidence 54
No 100
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.40 E-value=3.6e-13 Score=144.44 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC----
Q 019048 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 270 (347)
Q Consensus 206 ~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~---- 270 (347)
+.+++ ++|..+||... .+++.+.+|||||+||++||++| ||||++||+
T Consensus 481 i~~Rl-~~L~~vGL~~l----------------~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~ 543 (972)
T 2r6f_A 481 IRDRL-GFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDND 543 (972)
T ss_dssp HHHHH-HHHHHHTCTTS----------------BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred HHHHH-HHhhhCCCCcc----------------ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHH
Confidence 44444 45888899752 14889999999999999999998 999999974
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCC
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 312 (347)
|.|||+|+| .+....||+|++ | ++|++++.|++++++..+.
T Consensus 544 ~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~-LgpgaG~~gG~iv~~G~~~e~~~~~~ 603 (972)
T 2r6f_A 544 RLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID-IGPGAGIHGGEVVAAGTPEEVMNDPN 603 (972)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE-ECSSSGGGCCSEEEEECTTTTTTCTT
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE-eCCCccCCCCEEEEecCHHHHHhhhH
Confidence 899999999 344567999975 8 7999999999999987654
No 101
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.39 E-value=1.2e-13 Score=125.21 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=44.2
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHh--hcccCCCCCCCCcEEEECCEe
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~--gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++++++++..|+.-+ .++.+ .|++|++++|+||||||||||+++|+ ++.. +..|.+++++.+
T Consensus 6 ~~~~~~i~tg~~~lD--~~l~G------gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-----~~~~~~~~~~~~ 69 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFD--ELIEG------GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEE 69 (251)
T ss_dssp --CCCEECCSCTTTG--GGTTT------SEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSS
T ss_pred ccccceeecCCHhHH--HHhcC------CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEccC
Confidence 466677665554311 12222 68999999999999999999999999 7756 667778877643
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.38 E-value=9.2e-14 Score=149.43 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=33.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+||++++|++++|+||||||||||+|+|+++.-
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~ 698 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI 698 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 667999999999999999999999999999987643
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.38 E-value=8.7e-15 Score=130.37 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=26.4
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..++|++++|+||||||||||+++|+|++.
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999999999997
No 104
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.35 E-value=8.8e-15 Score=130.11 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=42.1
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 169 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~ 169 (347)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.. .....++.+++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~------~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTE------EVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECC------EEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecc------hhHhhhceEEEEEEec
Confidence 78999999999999999999999996 568 888887763 2222345567777765
No 105
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.35 E-value=4.6e-13 Score=134.85 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=45.4
Q ss_pred eeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 94 ~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+++||++++|++++|+|+||||||||+++|+|+++ ++.|+|.++|.+..
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTF 332 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCccc
Confidence 45999999999999999999999999999999999 89999999887754
No 106
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.35 E-value=3.9e-13 Score=130.66 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=76.3
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEEC-CEeCCCCccccccccCCCccceeeccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~-g~~i~~~~~~~~~~~~r~~~~~~~~~~~~ 171 (347)
++++++. .+|++++|+||||||||||+|+|+|+... |..|.|.++ |+.... -....++++++....
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g~~t--------t~~~~i~~v~q~~~l 272 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLGQHT--------TTAARLYHFPHGGDV 272 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC---------------------CCCEEEECTTSCEE
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCCccc--------eEEEEEEEECCCCEe
Confidence 5557765 48999999999999999999999998751 578999886 654310 011123444443221
Q ss_pred cccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHH
Q 019048 172 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 251 (347)
Q Consensus 172 ~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGq 251 (347)
+ +.+ .+.++ ++ ...+..+..+.+.++++.+++.. +.+..+.+|| ||
T Consensus 273 ~-----dtp-----gv~e~---~l---~~l~~~e~~~~~~e~l~~~gl~~-----------------f~~~~~~~lS-G~ 318 (358)
T 2rcn_A 273 I-----DSP-----GVREF---GL---WHLEPEQITQGFVEFHDYLGHCK-----------------YRDCKHDADP-GC 318 (358)
T ss_dssp E-----ECH-----HHHTC---CC---CCCCHHHHHHTSGGGGGGTTCSS-----------------STTCCSSSCT-TC
T ss_pred c-----Ccc-----cHHHh---hh---cCCCHHHHHHHHHHHHHHcCCch-----------------hcCCCcccCC-HH
Confidence 1 111 12221 11 12334556667788899999987 5689999999 99
Q ss_pred HHHHHHHHHh
Q 019048 252 QYNQIVATTF 261 (347)
Q Consensus 252 rQRv~IArAL 261 (347)
+||++||+++
T Consensus 319 ~~r~ala~gl 328 (358)
T 2rcn_A 319 AIREAVENGA 328 (358)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 9999999998
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.34 E-value=1.3e-12 Score=116.68 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=40.3
Q ss_pred ceeeEE-EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 93 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 93 L~~isl-~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
|+++.+ .+++|++++|+||||||||||++.|++... +..|.|.+.+.
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~ 59 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTT 59 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEES
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEc
Confidence 445777 899999999999999999999999999887 77788877553
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.33 E-value=9.8e-15 Score=151.20 Aligned_cols=197 Identities=17% Similarity=0.158 Sum_probs=86.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCce-------eeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC-CCcEEEE
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMT-------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTY 141 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~-------~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p-~~G~I~~ 141 (347)
+.++++||++.|+... ..+++.++ +.+|+++. +||+||||||||||+++|+|++. | ++|.|++
T Consensus 9 ~~i~~~~l~~~~~~~~-r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~vt~ 79 (608)
T 3szr_A 9 GSVAENNLCSQYEEKV-RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGIVTR 79 (608)
T ss_dssp -----------CHHHH-HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------CCC
T ss_pred chhhhhhhhHHHHHHH-HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCeEEE
Confidence 3588999999996321 11211100 12466765 99999999999999999999997 8 7999999
Q ss_pred CCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc
Q 019048 142 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 142 ~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
+|.++.... .......++.++|++|+...+... ++.+++.......... ..++..
T Consensus 80 ~g~~i~~~~-~~~~~~~~~~i~~v~Q~~~l~~~~----------tv~e~i~~~~~~~~~~--------------~~~~s~ 134 (608)
T 3szr_A 80 CPLVLKLKK-LVNEDKWRGKVSYQDYEIEISDAS----------EVEKEINKAQNAIAGE--------------GMGISH 134 (608)
T ss_dssp SCEEEEEEE-CSSSSCCEEEESCC---CCCCCHH----------HHHTTHHHHHHHHHCS--------------SSCCCS
T ss_pred cCEEEEEec-CCccccceeEEeeecccccCCCHH----------HHHHHHHHHHHHhcCC--------------ccccch
Confidence 998863100 000111223345555543322211 4444443321110000 011111
Q ss_pred cc-------ccccceeeeeechhhhhccCCCCCCHH-HHHHHHHHHHh-chhccCCCCCCeEEEEec--h----HHHhcc
Q 019048 222 SV-------IRKVNFVIFVVDGLAVLKSMEGDSDVE-KQYNQIVATTF-NCPYLSFRDDKPVVVVTH--G----DLLSLT 286 (347)
Q Consensus 222 ~~-------~~~~~~~~~vvd~~~~~~~~~~~LSgG-qrQRv~IArAL-DEPts~Ld~g~tiIiiTH--~----~~~~~a 286 (347)
.. ...| =+.++|++++.......|+.+ ++|...+++.+ -+|. +.+++++|| + .+.+++
T Consensus 135 ~~i~l~i~~~~~p--~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~-----~iil~vvt~~~d~a~~~~l~la 207 (608)
T 3szr_A 135 ELITLEISSRDVP--DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE-----TISLVVVPSNVDIATTEALSMA 207 (608)
T ss_dssp CCEEEEEEESSSC--CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS-----CCEEEEEESSSCTTTCHHHHHH
T ss_pred HHHHHHhcCCCCC--ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC-----CCceEEEeccchhccHHHHHHH
Confidence 00 0011 157889998766656666654 45666777764 3332 356777777 2 111111
Q ss_pred -------cEEEEEeeCCeEeecCCcccc
Q 019048 287 -------DRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 287 -------Dri~v~l~~G~iv~~g~~~~l 307 (347)
.+.++++.++.++..|+.+++
T Consensus 208 ~~v~~~g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 208 QEVDPEGDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp HHHCSSCCSEEEEEECGGGSSSSSTTCC
T ss_pred HHHhhcCCceEEEecchhhcCcccHHHH
Confidence 223344777777777765433
No 109
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.33 E-value=6.8e-13 Score=142.74 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC----
Q 019048 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 270 (347)
Q Consensus 206 ~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~---- 270 (347)
+.+++ +.|..+||... .+++.+.+|||||+||++||++| ||||++||+
T Consensus 498 i~~Rl-~~L~~vGL~~l----------------~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~ 560 (993)
T 2ygr_A 498 IRSRL-GFLLDVGLEYL----------------SLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNR 560 (993)
T ss_dssp HHHHH-HHHHHHTGGGS----------------CTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHH
T ss_pred HHHHH-HHHhhCCCCcc----------------ccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHH
Confidence 34444 45788888741 14889999999999999999998 999999974
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCC
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 312 (347)
|.|||+|+| .+....||+|++ | ++|++++.|++++++..+.
T Consensus 561 ~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~-Lgp~aG~~gG~iv~~G~~~e~~~~~~ 620 (993)
T 2ygr_A 561 RLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVD-IGPGAGEHGGRIVHSGPYDELLRNKD 620 (993)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEE-ECSSSGGGCCSCCEEECHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEE-ecCccccCCCEEEEeeCHHHhhhhhH
Confidence 899999999 344567999975 9 7999999999999887643
No 110
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.33 E-value=2.3e-14 Score=136.10 Aligned_cols=130 Identities=14% Similarity=0.021 Sum_probs=78.4
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE---CCEeCCCCccccccccCCCccceeecccccc---
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL--- 172 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~--- 172 (347)
++.+|++++|+||||||||||+|+|+ +++ |++|+|.+ +|++++... .... ...+++++|.+...
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~--~~~~--~~~~g~v~d~pg~~~~~ 230 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGV--RLIP--FGKGSFVGDTPGFSKVE 230 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCE--EEEE--ETTTEEEESSCCCSSCC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeE--EEEE--cCCCcEEEECcCcCcCc
Confidence 55689999999999999999999999 988 99999999 888775221 1111 12357777765321
Q ss_pred --ccc-hhhhhH-hhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCC
Q 019048 173 --SDD-ASDNIN-MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (347)
Q Consensus 173 --~~~-v~qn~~-~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LS 248 (347)
..+ + +++. .++.. .... ..........+...++.++++.++|.+. .+++++..||
T Consensus 231 l~~~lt~-e~l~~~f~~~--~~~~--c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~ls 289 (302)
T 2yv5_A 231 ATMFVKP-REVRNYFREF--LRYQ--CKYPDCTHTNEPGCAVKEAVKNGEISCE----------------RYKSYLKIIK 289 (302)
T ss_dssp GGGTSCG-GGGGGGCGGG--HHHH--HHSTTCCSSSCTTCHHHHHHHTTSSCHH----------------HHHHHHHHTT
T ss_pred ccccCCH-HHHHHHHHHH--HHcc--CCCCCCCCCCCCCCHHHHHHHcCCCCHH----------------HHHHHHHHHH
Confidence 122 3 3331 11100 0000 0001111222334568889999999853 3588899999
Q ss_pred HHHHHHHHHHH
Q 019048 249 VEKQYNQIVAT 259 (347)
Q Consensus 249 gGqrQRv~IAr 259 (347)
|.+++++.|||
T Consensus 290 ~~~~R~~~~~~ 300 (302)
T 2yv5_A 290 VYLEEIKELCR 300 (302)
T ss_dssp CCCTTHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 98899999987
No 111
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.32 E-value=7.2e-14 Score=134.41 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=41.0
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..++|++++|+||||||||||+++|+|+++ |+.|+|.+.|.++.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTF 168 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeeccc
Confidence 347899999999999999999999999999 99999999999875
No 112
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.31 E-value=2.3e-14 Score=136.93 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=85.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc--------cCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeec-ccccccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF--------ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY-DTRSLSD 174 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~--------~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~-~~~~~~~ 174 (347)
++++|+|+||||||||+|+|.|+. . |+.|+|.++|.++.... .+-..+...++..... +......
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-----~d~G~i~idg~~l~~~~-~~~~el~~gCicc~~~~~~~~~l~ 78 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-----NEFGEVSVDDQLIGDRA-TQIKTLTNGCICCSRSNELEDALL 78 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-----SSCCSCCEEEEEECTTS-CEEEEETTSCEEECTTSCHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-----ecCcccCccHHHHhCCC-CCEEEECCCceEEcccHHHHHHHH
Confidence 689999999999999999999987 5 89999999998875210 0111111111111111 1111111
Q ss_pred ch---hhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHH---HHHHHHCCCCcccccccceeeeeechhhhhccCCCCC
Q 019048 175 DA---SDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRM---RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 247 (347)
Q Consensus 175 ~v---~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i---~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~L 247 (347)
++ +|+..+... ++.++..++ ......... .+.-. ...++.++.+||...+.+.+. +|
T Consensus 79 ~l~~~~q~~~~~~~~~v~E~~~l~-------~p~~~~~~~~~~~~~~~--------~~~l~~~l~~vd~~~~~~~~~-~l 142 (318)
T 1nij_A 79 DLLDNLDKGNIQFDRLVIECTGMA-------DPGPIIQTFFSHEVLCQ--------RYLLDGVIALVDAVHADEQMN-QF 142 (318)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTC-------CHHHHHHHHHHSHHHHH--------HEEEEEEEEEEETTTHHHHHH-HC
T ss_pred HHHhHHhcCCCCCCEEEEeCCCCC-------CHHHHHHHHhcCccccC--------eEEECCEEEEEEHHHHHHHHh-hc
Confidence 11 121111000 111111110 001110010 00111 123566889999987766555 89
Q ss_pred CHHHHHHHHHHHHh-------chhccC-------CCCCCeEEEEec
Q 019048 248 DVEKQYNQIVATTF-------NCPYLS-------FRDDKPVVVVTH 279 (347)
Q Consensus 248 SgGqrQRv~IArAL-------DEPts~-------Ld~g~tiIiiTH 279 (347)
|+||+||+..++++ ||| .. +.++.||+++||
T Consensus 143 s~g~~Q~~~ad~ill~k~dl~de~-~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 143 TIAQSQVGYADRILLTKTDVAGEA-EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp HHHHHHHHTCSEEEEECTTTCSCT-HHHHHHHHHHCSSSCEEECCS
T ss_pred hHHHHHHHhCCEEEEECcccCCHH-HHHHHHHHHhCCCCeEEEecc
Confidence 99999999988887 787 22 346899999999
No 113
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.31 E-value=1e-14 Score=127.81 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCC---CcEEEECCEeCC
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGD 147 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~---~G~I~~~g~~i~ 147 (347)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccc
Confidence 5799999999999999999999999 77 899999998753
No 114
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.28 E-value=3e-14 Score=123.15 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=51.6
Q ss_pred EEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 73 ~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+.+++++.|+. ..+ ++++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|.++.
T Consensus 9 ~~~~~~~~~g~---~~~---l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~------~~G~V~~~g~~i~ 71 (158)
T 1htw_A 9 PDEFSMLRFGK---KFA---EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIG------HQGNVKSPTYTLV 71 (158)
T ss_dssp CSHHHHHHHHH---HHH---HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTT------CCSCCCCCTTTCE
T ss_pred CCHHHHHHHHH---HHH---HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCC------CCCeEEECCEeee
Confidence 34456667753 234 566999999999999999999999999999999984 7899999987653
No 115
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.26 E-value=1.3e-12 Score=138.21 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.6
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+||+ |++++|+||||||||||+|+|+|+..
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 6679999 99999999999999999999999873
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=4.3e-13 Score=132.99 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=36.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+++||+++|+.. .+ ++++||+| +|+|+||||||||+++|+|+..
T Consensus 10 ~~l~~~~l~~~y~~~---~v---l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 10 GYVGFANLPNQVYRK---SV---KRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -----CCCCCCTTTT---TC---C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred CcEEEEecceeECCE---EE---ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999752 34 56699998 9999999999999999999986
No 117
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.22 E-value=2.9e-13 Score=128.41 Aligned_cols=122 Identities=12% Similarity=-0.042 Sum_probs=74.4
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE---CCEeCCCCccccccccCCCccceeecccccc-c
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL-S 173 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~-~ 173 (347)
|++.+|++++|+||||||||||+|+|+|+.+ |++|+|.+ +|++++... +.. ..+.+++++|.+... .
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~--~~~--~~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTA--QLL--KFDFGGYVVDTPGFANL 234 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSC--CEE--ECTTSCEEESSCSSTTC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeee--EEE--EcCCCCEEEECcCCCcc
Confidence 4577899999999999999999999999999 99999999 898875321 111 112467888876432 2
Q ss_pred cchhhh----hHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCC
Q 019048 174 DDASDN----INMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (347)
Q Consensus 174 ~~v~qn----~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LS 248 (347)
++++++ ..+++. ++ +|+.++...+ ..+...++.++|+.++|+.. .++++|++||
T Consensus 235 ~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~ls 293 (301)
T 1u0l_A 235 EINDIEPEELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAES----------------RYENYVKMFY 293 (301)
T ss_dssp CCCSSCHHHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHH----------------HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHH----------------HHHHHHHHHH
Confidence 333333 334444 45 6776653211 12334568899999999632 3588888888
Q ss_pred H
Q 019048 249 V 249 (347)
Q Consensus 249 g 249 (347)
+
T Consensus 294 e 294 (301)
T 1u0l_A 294 E 294 (301)
T ss_dssp H
T ss_pred H
Confidence 5
No 118
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.22 E-value=1.3e-14 Score=143.83 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=39.3
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.++|++++|+||||||||||+++|+|++. |++|.|.+.+.++.
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIE 206 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccch
Confidence 37899999999999999999999999998 89999999887663
No 119
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.21 E-value=3e-12 Score=136.16 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+||+ ++|++++|+||||||||||+|+|+|+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 6779999 9999999999999999999999999864
No 120
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.20 E-value=1.1e-11 Score=105.99 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=46.2
Q ss_pred hccCCCCCCHHHHHHHHHH------HHh---------chhccCCCC----------------CCeEEEEec-hHHHhccc
Q 019048 240 LKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 287 (347)
Q Consensus 240 ~~~~~~~LSgGqrQRv~IA------rAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aD 287 (347)
.++++.+||||||||++|| ||| ||||++||. |.|||++|| ..+..+||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence 4778999999999999886 776 999999883 789999999 56678999
Q ss_pred EEEEEee
Q 019048 288 RARIRTY 294 (347)
Q Consensus 288 ri~v~l~ 294 (347)
++++ |+
T Consensus 131 ~ii~-l~ 136 (148)
T 1f2t_B 131 HVIR-IS 136 (148)
T ss_dssp EEEE-EE
T ss_pred EEEE-EE
Confidence 9965 83
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.19 E-value=2.6e-13 Score=118.63 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=35.9
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.+++|++++|+||||||||||+++|++. +..|.|.++|.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-------~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-------PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-------SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-------cCCCeEEEcccch
Confidence 5789999999999999999999999996 3579999998654
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=2.3e-13 Score=134.98 Aligned_cols=167 Identities=9% Similarity=0.066 Sum_probs=87.0
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeE--EEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~--~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.|++++ ++.|+. .. |+++||+|++|++ +||+||||||||||+|+|+|+.- .| .++..
T Consensus 16 ~l~~~~-~~~y~~---~~----L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-------~g------~~~~~ 74 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP----DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-------EG------EPATH 74 (427)
T ss_dssp -CCCCC-CC-CC-----C----HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------------
T ss_pred eEEEee-EEEECC---ee----cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-------cC------CcCCC
Confidence 477787 888864 22 4559999999999 99999999999999999999852 11 11110
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHC-CCCc----c
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEP----S 222 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~-gl~~----~ 222 (347)
. .....++.+++++|+...+..+ +.+++.+... +........ -...+..++.+++... ++.. .
T Consensus 75 ~----~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~------i~~~i~~q~~~~L~e~~~i~r~l~~~ 143 (427)
T 2qag_B 75 T----QPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKP------IVEFIDAQFEAYLQEELKIRRVLHTY 143 (427)
T ss_dssp C----CSSCEEEEEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHH------HHHHHHHHHHHHHHHC--CCCCCCCS
T ss_pred C----CccceEeeEEEEeecCccccccchhhhhhhhhc-cccchhhhH------HHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 0 0000112345666654433333 4444433210 000000000 0122344555556654 4432 1
Q ss_pred cccccce-eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC-----------------CCCeEE
Q 019048 223 VIRKVNF-VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-----------------DDKPVV 275 (347)
Q Consensus 223 ~~~~~~~-~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld-----------------~g~tiI 275 (347)
...+||+ +.|++|.. +.|+-.+ +.|+++| |+|+..|. .|.+|+
T Consensus 144 ~d~rVh~~v~fI~d~~-------~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~ 213 (427)
T 2qag_B 144 HDSRIHVCLYFIAPTG-------HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIY 213 (427)
T ss_dssp CC--CCEEEEEECCCC----------CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCC
T ss_pred ccccccEEEEEEeCCC-------CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEE
Confidence 2235675 66777765 2455554 6888888 88887753 288888
Q ss_pred EEec
Q 019048 276 VVTH 279 (347)
Q Consensus 276 iiTH 279 (347)
.++.
T Consensus 214 ~is~ 217 (427)
T 2qag_B 214 QFPT 217 (427)
T ss_dssp CCC-
T ss_pred ecCC
Confidence 8886
No 123
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.17 E-value=1.1e-11 Score=120.03 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=40.4
Q ss_pred ceee-EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCC----cE-EEECCEe
Q 019048 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQ-VTYNSSV 145 (347)
Q Consensus 93 L~~i-sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~----G~-I~~~g~~ 145 (347)
|+.+ ++.|++|++++|+||||||||||++.|++..... |++ |. |++++.+
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCC
Confidence 3334 6799999999999999999999999999998210 565 67 8888754
No 124
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.17 E-value=5.6e-12 Score=122.49 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=43.9
Q ss_pred eeeEEEeCCCceeeecCCceeeEE-------EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC-CcEEEECC
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNS 143 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl-------~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~-~G~I~~~g 143 (347)
..++++|-... ... |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+
T Consensus 92 ~~~~iR~~~~~-~~~---l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~e 159 (356)
T 3jvv_A 92 AGAVFRTIPSK-VLT---MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIE 159 (356)
T ss_dssp EEEEEEEECCS-CCC---TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEE
T ss_pred cEEEEEECCCC-CCC---HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEcc
Confidence 45666663222 233 344665 678899999999999999999999999998 76 56665433
No 125
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.16 E-value=8.6e-11 Score=109.47 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=27.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+++|++++|+||||||||||++.|++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999999765
No 126
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.16 E-value=1.3e-11 Score=124.15 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=46.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence 7779999999 9999999999999999999999999 99999999998764
No 127
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.09 E-value=1e-12 Score=126.67 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=59.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++|+++++++.|+. ..+ |+++||++.+|++++|+||||||||||+++|+|++. |++|+|.+.|.++.
T Consensus 28 ~~ie~~~~~~~~~~---~~~---l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 28 TLAESRRADHRAAV---RDL---IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPS 94 (337)
T ss_dssp HHHTCSSHHHHHHH---HHH---HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGG
T ss_pred HHHeeCCcccccCh---HHH---HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCc
Confidence 46888999999953 234 666999999999999999999999999999999999 99999999998864
No 128
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=4.3e-11 Score=118.53 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=32.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++++|+++.|+.++|||+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999999999999999984
No 129
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.08 E-value=2.7e-10 Score=101.03 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=33.4
Q ss_pred eEE-EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 96 SDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 96 isl-~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
+.. -+++|++++|+||||||||||++.|++ . +..+.++++.
T Consensus 12 ~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~i~~ 53 (220)
T 2cvh_A 12 LLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAYVDT 53 (220)
T ss_dssp HTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEEEES
T ss_pred hhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEEEEC
Confidence 443 689999999999999999999999999 4 4455566554
No 130
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.06 E-value=3.6e-11 Score=117.38 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=37.9
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC-CcEEEECCEeC
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVG 146 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~-~G~I~~~g~~i 146 (347)
+++|++++|+||||||||||+++|+|+++ |+ +|.|.+.+.++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPI 175 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccH
Confidence 78999999999999999999999999999 87 89997766444
No 131
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.05 E-value=8e-12 Score=121.47 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=43.9
Q ss_pred eeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 94 ~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
+++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECCc
Confidence 66999999999999999999999999999999999 99999999874
No 132
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.05 E-value=1.6e-10 Score=101.26 Aligned_cols=63 Identities=10% Similarity=-0.039 Sum_probs=51.8
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH- 279 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH- 279 (347)
++.+.+.......+.+..||||||||++||++| ||||++||. +.++|+|||
T Consensus 47 gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~ 126 (173)
T 3kta_B 47 GLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLR 126 (173)
T ss_dssp CEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CceEEecCCCccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 455555555555677889999999999999998 999999984 678999999
Q ss_pred hHHHhcccEEEE
Q 019048 280 GDLLSLTDRARI 291 (347)
Q Consensus 280 ~~~~~~aDri~v 291 (347)
..+..+||+++.
T Consensus 127 ~~~~~~ad~i~~ 138 (173)
T 3kta_B 127 DVMMANADKIIG 138 (173)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHHhCCEEEE
Confidence 667789999964
No 133
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.04 E-value=5.6e-10 Score=100.48 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=35.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhh--cccCCCCCC-----CCcEEEECCEe
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFAS-----ERAQVTYNSSV 145 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~g--l~~~~~~~p-----~~G~I~~~g~~ 145 (347)
-|++|++++|+||||||||||++.|++ +++ + ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-----~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP-----IDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc-----hhcCCCCCeEEEEECCC
Confidence 589999999999999999999999999 454 4 56788888754
No 134
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.98 E-value=1.7e-11 Score=116.75 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=27.4
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE---CCEeCC
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGD 147 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~---~g~~i~ 147 (347)
+++.+|++++|+||||||||||+|+|+|+.. |..|+|.+ +|+.++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt 215 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTT 215 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------C
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccc
Confidence 6788999999999999999999999999999 99999998 787765
No 135
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.96 E-value=6.7e-13 Score=124.27 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=40.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+++++|.+++| ++|+||||||||||+++|+|.+. + |.|.++|.++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPELL 81 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTTTC
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHHHH
Confidence 56699999999 99999999999999999999987 5 78999887654
No 136
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.95 E-value=2.9e-13 Score=129.89 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=49.5
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCC-------eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~G-------e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
+++.++++..|+.. .+ ++++++.|.+| +.++|+||||||||||+++|++.+.. .+.+++|.+..++
T Consensus 18 ~lr~~~l~~~~g~~---~~---~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-~~~~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQE---NV---KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-NIHVTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCH---HH---HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-CEEEEETTTCCSH
T ss_pred HcCCccHHHccCcH---HH---HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEechHhcCH
Confidence 46667777777642 23 56699999876 88999999999999999999999820 0006667666555
Q ss_pred Ee
Q 019048 144 SV 145 (347)
Q Consensus 144 ~~ 145 (347)
.+
T Consensus 91 ~~ 92 (334)
T 1in4_A 91 GD 92 (334)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.91 E-value=1.1e-09 Score=96.35 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=32.5
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
|+++++|++++|+||||||||||+++|+|++ | .+.+.+.++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~------~---~~~~~~~~~~ 42 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL------A---EIKISISHTT 42 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS------S---SEEECCCEEC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC------C---CeEEeceecc
Confidence 5788999999999999999999999999985 4 3667665543
No 138
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.89 E-value=7.3e-11 Score=107.79 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=41.8
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.|+++|+...|+ -+|++.+ ++++|+||||||||||+++|+|++. |++|.|.++|.++.
T Consensus 9 ~l~l~~~~~~~~-------------~~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 9 SLTLINWNGFFA-------------RTFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTEA 66 (227)
T ss_dssp EEEEEEETTEEE-------------EEECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC--------
T ss_pred EEEEEeeecccC-------------CEEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEcc
Confidence 478888765542 1455666 8999999999999999999999999 99999999998873
No 139
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.89 E-value=3.4e-11 Score=114.39 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=54.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEe-------------------cCCeEEEEECCCCChHHHHHHHHhhcccCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFEND 130 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i-------------------~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~ 130 (347)
.+|+++||++.|.. + +++++|.+ .+|+++||+||||||||||+++|+|++...
T Consensus 36 ~~i~~~~v~~~y~~---~-----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 36 EDLSLEEVAEIYLP---L-----SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp TTCCHHHHHHTHHH---H-----HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred cccchHhHHHHHHH---H-----HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 46999999999942 3 66699988 999999999999999999999999987511
Q ss_pred CCCCCCcEEEE---CCEe
Q 019048 131 KFASERAQVTY---NSSV 145 (347)
Q Consensus 131 ~~~p~~G~I~~---~g~~ 145 (347)
|++|+|.+ +|..
T Consensus 108 ---~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 108 ---PEHRRVELITTDGFL 122 (308)
T ss_dssp ---TTCCCEEEEEGGGGB
T ss_pred ---CCCCeEEEEecCCcc
Confidence 57899999 7754
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.88 E-value=2.7e-09 Score=105.15 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=33.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHH--hhcccCCCCCCCC-----cEEEECCEe
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRI--SKVFENDKFASER-----AQVTYNSSV 145 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L--~gl~~~~~~~p~~-----G~I~~~g~~ 145 (347)
-|++|++++|+||||||||||++.| .++.+ ++. +.+++++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-----~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP-----LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC-----cccCCCCCcEEEEeCCC
Confidence 5899999999999999999999944 56665 433 378888754
No 141
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.86 E-value=8.6e-11 Score=111.01 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=26.0
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++.+++|+|++|||||||++.|.+++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3568999999999999999999999998
No 142
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.85 E-value=2.4e-11 Score=111.03 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=34.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHh---hcccCCCCCCCCcEEEECCEe
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~---gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++++++|+||||||||||+++|+ |+.. ++.|+|.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHh
Confidence 47899999999999999999999 9988 899998877643
No 143
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.85 E-value=7.4e-10 Score=100.37 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=34.9
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC--CCcEEEECCEe
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSV 145 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p--~~G~I~~~g~~ 145 (347)
-.-..++|++++|+||||||||||+++|+|+++ | ..|.|.+.+++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-----p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-----LYDTQVSVSHTTRQ 55 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSC-----TTTEEECCCEECSC
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-----CCceEEEEEecCCC
Confidence 445689999999999999999999999999997 6 57888777654
No 144
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.85 E-value=9.7e-10 Score=95.90 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=31.1
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
|++++|+||||||||||+++|++ +.+|.++++|.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccch
Confidence 68999999999999999999986 3568899988654
No 145
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.84 E-value=5.7e-10 Score=100.80 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHh-hccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~-gl~~ 128 (347)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45699999999999999999999999999999 9985
No 146
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.78 E-value=3.8e-10 Score=104.45 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=34.7
Q ss_pred CcEEEeee-EEEeCCCceeeecCCceeeEEEecC---CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 70 SLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 70 ~~l~i~nl-~~~y~~~~~~~~l~~L~~isl~i~~---Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+++|+ +++|+... .+ |+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~--~~---l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQ--QI---LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------C--HH---HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcc--hh---hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999 99993232 34 6669999999 99999999999999999999999764
No 147
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.73 E-value=5.4e-09 Score=99.41 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=41.1
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
++|+.++|++++|+|+|||||||+++.|++++. +..|+|.+.+.|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEcccc
Confidence 566778999999999999999999999999998 8888998877664
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.69 E-value=4.6e-09 Score=93.49 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=35.8
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC---CCcEEEECCEeC
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 146 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p---~~G~I~~~g~~i 146 (347)
.++|++++|+||||||||||+++|+|+++ | ..|.|.++|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-----~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-----AQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-----HTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCceEEEecCCCcC
Confidence 57899999999999999999999999998 5 367777776543
No 149
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.63 E-value=4.2e-09 Score=106.70 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=39.8
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhh--cccCCCCCCCCcEEEECCEeCC
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g--l~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+++++.++..++|.|++||||||++++|.. ++. .+.|++.+.+.|.+
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK 208 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCS
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCc
Confidence 889999999999999999999999999875 444 56688887777765
No 150
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.61 E-value=5.4e-09 Score=106.08 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=44.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
+++++|.+++|+.++|+||||||||||+++|+|+++ |++|.|.+.|..
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcc
Confidence 345889999999999999999999999999999999 999999998854
No 151
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.58 E-value=6e-08 Score=83.75 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=32.0
Q ss_pred eeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 94 ~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++|++.+| +++|+||||||||||+++|.+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 5599999999 999999999999999999999987
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.55 E-value=1.6e-08 Score=89.56 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=24.1
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999985
No 153
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.55 E-value=5.5e-09 Score=92.30 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=43.4
Q ss_pred eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE--EECCEeCC
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSSVGD 147 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I--~~~g~~i~ 147 (347)
+|++..++. +.+ .+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~---~~~---~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEK---VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCH---HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCH---HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchhh
Confidence 355555543 334 344888889999999999999999999999999986 45777 88876553
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.52 E-value=1.3e-07 Score=89.23 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=50.5
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+.++++++.|+.. .++++|+ +|++++|+|+|||||||++..|++++. +..|+|.+.+.|+.
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCCcc
Confidence 5677888888542 1238888 999999999999999999999999999 88899998876653
No 155
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.50 E-value=4.9e-08 Score=85.64 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.3
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5789999999999999999999999999996
No 156
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.49 E-value=2.3e-07 Score=90.02 Aligned_cols=83 Identities=11% Similarity=0.044 Sum_probs=54.1
Q ss_pred HHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHH------HHHHh----------chhccCCCC---
Q 019048 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI------VATTF----------NCPYLSFRD--- 270 (347)
Q Consensus 210 i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~------IArAL----------DEPts~Ld~--- 270 (347)
+.+++..+++.......-+.+.|.+.... .+.++..|||||+||++ +|++| ||||++||.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPN-GVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETT-EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCC-CccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 34556666654311111112444444432 13566789999999985 45654 999999873
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEee
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRTY 294 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l~ 294 (347)
+.+||++|| ..+..+||++++ |+
T Consensus 324 ~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~-l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN-VK 359 (371)
T ss_dssp HHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE-EE
T ss_pred HHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE-EE
Confidence 468999999 457789999975 65
No 157
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=8.4e-08 Score=84.56 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=25.6
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+||++++|.+++|+|++||||||+.+.|++.+.
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 566999999999999999999999999999998764
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=1.3e-07 Score=90.01 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=26.6
Q ss_pred EEEECCCCChHHHHHHHHhh-cccCCCCCCCCcEEEECCEeC
Q 019048 106 LLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~g-l~~~~~~~p~~G~I~~~g~~i 146 (347)
+.|+||||+|||||+++|++ ++. |+.|.+.++|.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC-----TTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceee
Confidence 89999999999999999999 788 8899999998764
No 159
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.38 E-value=1e-07 Score=83.24 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=24.6
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999997
No 160
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.37 E-value=4.4e-08 Score=90.04 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=38.8
Q ss_pred cCCeEEEEECCCCChHHHHHHHHh---hcccCCCCCCCCcEEE--------ECCEeCC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT--------YNSSVGD 147 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~---gl~~~~~~~p~~G~I~--------~~g~~i~ 147 (347)
++|++++|+|||||||||++++|+ |+.. +++|.++ .+|.++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCcc
Confidence 789999999999999999999999 9998 9999999 8887763
No 161
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.37 E-value=1.3e-07 Score=82.23 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=25.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|++++|+||||||||||+++|+++++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999886
No 162
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.35 E-value=1.6e-07 Score=82.81 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=32.0
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.++.++|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEccccc
Confidence 4667899999999999999999999999876 6688887554
No 163
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.30 E-value=1.1e-06 Score=87.59 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=37.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EEEECC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNS 143 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I~~~g 143 (347)
|+++..-+++|+++.|.|++|+|||||+..|++... +..| .|.|.+
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s 239 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFS 239 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEE
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEE
Confidence 555777799999999999999999999999998876 5445 566554
No 164
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.30 E-value=1.8e-07 Score=82.66 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=37.3
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
..++|++++|+|+||||||||+++|+++++ +..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccCc
Confidence 357889999999999999999999999998 7788888766553
No 165
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.26 E-value=2.2e-07 Score=88.81 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=45.0
Q ss_pred eeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 94 ~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++++|++++|++++|+|+|||||||++..|++.+. +..|+|.+.+.|+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCCCc
Confidence 45999999999999999999999999999999999 88899999887764
No 166
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.25 E-value=1.6e-07 Score=81.16 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=31.8
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G 137 (347)
+|++++|+.++|+||||||||||+++|++.+. +.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 45677899999999999999999999999997 6655
No 167
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.24 E-value=3.5e-07 Score=77.57 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc--EEEECCEeC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 146 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G--~I~~~g~~i 146 (347)
+|+.++|+||||||||||+++|++.+. + +| .+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-----E-AGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-----T-TTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-----h-cCCcEEEEcHHHh
Confidence 899999999999999999999999998 5 57 677766443
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.21 E-value=1.8e-07 Score=90.69 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=34.9
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE-EECCE
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNSS 144 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I-~~~g~ 144 (347)
=|++|+++.|.||+|||||||+..++.... +..|.+ ++++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~E 98 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDAE 98 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEESS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEecc
Confidence 488999999999999999999999999887 666765 55543
No 169
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.18 E-value=9.4e-07 Score=76.96 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=32.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCC------CCcEEEECCEeC
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 146 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p------~~G~I~~~g~~i 146 (347)
.++|+|+||||||||++.++|........| ++|.|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999999875211112 468899998765
No 170
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.16 E-value=6.9e-07 Score=80.66 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=34.7
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
+.+.++|++++|+|+||||||||+++|+++ .|+|.+.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence 445689999999999999999999999987 37788887654
No 171
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.15 E-value=8e-07 Score=90.86 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=38.0
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EE-EECCEeC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QV-TYNSSVG 146 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I-~~~g~~i 146 (347)
.+++|++++|+|+||||||||+++|++++. |+.| .+ +++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcHH
Confidence 578999999999999999999999999999 8886 67 4888554
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.14 E-value=5.1e-06 Score=80.63 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=29.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCC------CCCCCCcEEEECCEeC
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFEND------KFASERAQVTYNSSVG 146 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~------~~~p~~G~I~~~g~~i 146 (347)
+++|+|++|||||||+|.|+|..... ...++.|.|.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 39999999999999999999875410 0014568888887543
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.14 E-value=1.1e-06 Score=77.97 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999987
No 174
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.13 E-value=4.6e-07 Score=82.53 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=39.1
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
++++++++++| ++|+||||||||||+++|++... .|.+.+++.++
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~ 85 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 85 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHH
Confidence 56699999999 89999999999999999999875 58888887554
No 175
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.10 E-value=5.8e-07 Score=87.79 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=33.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++++.+++|++++|+||||||||||+++|++.+.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 556999999999999999999999999999998654
No 176
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.09 E-value=5.8e-07 Score=83.21 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=39.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
+++++|++++| ++|+||||||||||+++|++.+. .|.|.+++.++
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~ 109 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 109 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHH
Confidence 56699999999 89999999999999999999875 58888887654
No 177
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.07 E-value=4.6e-07 Score=86.68 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=37.1
Q ss_pred ceeeEEEecCCe------EEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 93 MTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 93 L~~isl~i~~Ge------~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
|++++..+.++. ++||+||||||||||+++|++++... |+.|.+.+-+
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~---~~~~~v~~i~ 129 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW---PDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS---TTCCCEEEEE
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc---CCCCeEEEEe
Confidence 555777777776 99999999999999999999998721 3556655433
No 178
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.05 E-value=2.4e-06 Score=83.86 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=36.6
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc----CC---CCCCCCcEEEECCEe
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE----ND---KFASERAQVTYNSSV 145 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~----~~---~~~p~~G~I~~~g~~ 145 (347)
.+++|..++|||+||||||||+|+|+|... +. ...|+.|.|.+.|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcc
Confidence 567899999999999999999999999211 00 111889999998743
No 179
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.04 E-value=2.2e-06 Score=76.42 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=27.2
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-|+...+|++++|+||||||||||++.|.+.++
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356667899999999999999999999999875
No 180
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.03 E-value=2.6e-06 Score=74.26 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=31.1
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCC------CCcEEEECCEeC
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 146 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p------~~G~I~~~g~~i 146 (347)
.++|+|+||||||||++.|+|........| ..|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999753111112 357888988754
No 181
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.02 E-value=7.2e-07 Score=87.24 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=46.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCce--------------eeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~--------------~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+.++||++.|+..... |+ |+++.|.+|+.++|+||+|||||||++.|++...
T Consensus 133 ri~Fe~ltp~yP~er~~-----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSRLR-----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSBCC-----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccc-----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 48899999999865433 66 6999999999999999999999999999999874
No 182
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.01 E-value=2.7e-06 Score=72.72 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.9
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 468999999999999999999999865 5567776444
No 183
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.97 E-value=2.9e-06 Score=72.25 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.|.+++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999876
No 184
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.93 E-value=0.00011 Score=66.03 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999998765
No 185
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.91 E-value=4.7e-06 Score=71.67 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=32.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc--EEEECCEeC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 146 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G--~I~~~g~~i 146 (347)
++|++++|+|++||||||++++|++.+. + .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECChHH
Confidence 4789999999999999999999999987 5 56 666666443
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.91 E-value=1.6e-06 Score=83.11 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=50.8
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
+++.+++.+.|+. ..+ ++++++.+.+|.+++|+|++|||||||++.|++.+. +..++|.+-+.+.
T Consensus 30 ~ie~~~~~~~~~~---~~~---~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALS---TQL---LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHH---HHH---HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred HhhcCCchhhhHH---HHH---HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeecC
Confidence 3555666656643 123 556999999999999999999999999999999998 7777777766554
No 187
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.89 E-value=2.4e-06 Score=75.98 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=29.6
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc---cCCCCCCCCcEEEE
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF---ENDKFASERAQVTY 141 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~---~~~~~~p~~G~I~~ 141 (347)
+.+++|+||+||||||++++|++.+ . ++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~-----~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL-----LDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE-----EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc-----ccCcceee
Confidence 5689999999999999999999877 4 67787776
No 188
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.88 E-value=4.1e-06 Score=79.02 Aligned_cols=40 Identities=15% Similarity=0.423 Sum_probs=34.6
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EEEECCEe
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV 145 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I~~~g~~ 145 (347)
.+|++++|+|+|||||||+++.|++.+. +++| +|.+-+.|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcCCEEEEEecC
Confidence 4789999999999999999999999998 7778 67665544
No 189
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.88 E-value=5.1e-06 Score=73.18 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=27.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++|.+++|+|++|||||||++.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 678899999999999999999999999874
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.87 E-value=3.6e-06 Score=87.90 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.4
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
|++++++..++|+|++|||||||++.|++..... +..|+| .+|..+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCccc
Confidence 5678899999999999999999999999876510 266877 555444
No 191
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.85 E-value=8.4e-06 Score=68.95 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+++.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 33466777665 89999999999999999998544
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.85 E-value=5.9e-06 Score=79.60 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=36.0
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+++.+++|+|++|||||||+|.|.|.+. +..|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeecCC
Confidence 4578999999999999999999999998 78888888776643
No 193
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.85 E-value=1e-05 Score=73.31 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.6
Q ss_pred ceeeEEEec---CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE
Q 019048 93 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (347)
Q Consensus 93 L~~isl~i~---~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~ 141 (347)
|.++||.+. +|.+++|.|++||||||+++.|...+. + .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCcee
Confidence 566888877 999999999999999999999999998 6 555544
No 194
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.79 E-value=7.3e-06 Score=72.62 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=37.5
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc--EEEECCEe
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSV 145 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G--~I~~~g~~ 145 (347)
+.+++|.+++|+|++||||||+++.|.+.+. |..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChH
Confidence 4567899999999999999999999999998 7788 88887644
No 195
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.73 E-value=3.1e-06 Score=81.47 Aligned_cols=40 Identities=25% Similarity=0.363 Sum_probs=30.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh--cccCCCCCCCCcEEE
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVT 140 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g--l~~~~~~~p~~G~I~ 140 (347)
|++++++++ .++|||++|||||||++.|.| +++ +.+|.+.
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-----~~~~~vT 68 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-----RGSGIVT 68 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-----CCSSSCC
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-----CCCCccc
Confidence 566999998 899999999999999999999 666 4555544
No 196
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.71 E-value=5.4e-06 Score=85.44 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=43.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCC-cEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~-G~I~~~g~~i 146 (347)
++++++.+..|+.++|+||||||||||+++|++++. +.. |.+.+.+...
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNPE 99 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCTT
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCcc
Confidence 556999999999999999999999999999999998 666 7788776544
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.68 E-value=6.7e-06 Score=83.80 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=39.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
+.++++++ +|+.++|+||||||||||+++|++.+. +..|.|.+.|.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 34477787 899999999999999999999999997 77788877663
No 198
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.64 E-value=1.7e-05 Score=78.50 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=48.0
Q ss_pred EeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 74 i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.+++++.|+.. -++++|+ ++++++++|++||||||++..|++.+. +..++|.+.+.|+.
T Consensus 79 ~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECCSS
T ss_pred HHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeecccc
Confidence 45677777542 1237787 899999999999999999999999999 88889998877754
No 199
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.61 E-value=3.8e-05 Score=68.58 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=31.1
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHH-hhcccCCCCCCCCcEEEECC
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRI-SKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L-~gl~~~~~~~p~~G~I~~~g 143 (347)
.--+++|++++|+||||||||||+..+ .++.+ ...+.++++.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----~~~~v~~~~~ 59 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK-----MGEPGIYVAL 59 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEES
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEc
Confidence 446899999999999999999996544 55555 4444555554
No 200
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.61 E-value=1e-05 Score=70.75 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=27.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
++++||..++. .++|+|++|||||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 55689988777 578999999999999999986
No 201
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.61 E-value=3.8e-05 Score=66.43 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
++++++..++. .++|+|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 55699998887 778999999999999999987
No 202
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.60 E-value=3.6e-05 Score=66.50 Aligned_cols=40 Identities=25% Similarity=0.465 Sum_probs=32.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE-EECC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNS 143 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I-~~~g 143 (347)
...+|.++.|+|++||||||+++.|+..+. +..+.+ .+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEeeH
Confidence 446889999999999999999999999987 655655 4443
No 203
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.59 E-value=4.6e-05 Score=64.96 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.3
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++|..++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
No 204
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.59 E-value=3.6e-05 Score=68.29 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=27.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.+.++++.+| +.+|+|||||||||++.+|.-++-
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33467777765 899999999999999999975443
No 205
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.57 E-value=1.3e-05 Score=75.69 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=47.9
Q ss_pred EeeeEEEeCCCceeeecCCcee-eEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 74 AKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 74 i~nl~~~y~~~~~~~~l~~L~~-isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.+++...|+.. .++ ++|+.+ +.+++++|++|+||||++..|++.+. +..++|.+.+.|..
T Consensus 77 ~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 77 YDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred HHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecCCC
Confidence 45666667542 234 777776 99999999999999999999999998 77789988777654
No 206
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.57 E-value=3.1e-05 Score=67.12 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=26.8
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+||+..+|..++|+|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999999876
No 207
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.56 E-value=3.5e-05 Score=67.59 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
+++|+|++||||||++++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 208
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.53 E-value=3.5e-05 Score=67.78 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=26.2
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
...+|.+++|+||||||||||++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356889999999999999999999988764
No 209
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.49 E-value=2.4e-05 Score=79.07 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=38.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
++++++.+++| ++|+||+|+|||||+++|++... .+.+.+++.++
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~ 100 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 100 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGG
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHH
Confidence 45589999999 89999999999999999999864 57788887665
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.44 E-value=5.5e-05 Score=66.09 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 211
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.42 E-value=8.8e-05 Score=63.22 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.|++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 212
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.42 E-value=9.9e-05 Score=72.96 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=31.9
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccC----C---CCCCCCcEEEECCEeC
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFEN----D---KFASERAQVTYNSSVG 146 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~----~---~~~p~~G~I~~~g~~i 146 (347)
-.++|+|+||||||||+|.|+|.... . .-.+..|.+.++|+++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 38999999999999999999997420 0 0014568899988754
No 213
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.40 E-value=0.00017 Score=69.62 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=27.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+++..+++.+| +.+|+|||||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 55588888776 899999999999999999974
No 214
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.39 E-value=0.00013 Score=61.32 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 215
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.38 E-value=0.0002 Score=68.74 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=30.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444555699999999999999999999998887665
No 216
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.35 E-value=0.00012 Score=63.59 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.7
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
.+++|+|+||||||||++.|.+.+.... ..-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCCc
Confidence 5799999999999999999999876211 123677766543
No 217
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.30 E-value=7.4e-05 Score=70.25 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++.+++|+|++|||||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999863
No 218
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.29 E-value=9.7e-05 Score=64.57 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.7
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
..+++|+|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 219
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.28 E-value=0.00012 Score=71.88 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=33.0
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccC------CCCCCCCcEEEECCE
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFEN------DKFASERAQVTYNSS 144 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~------~~~~p~~G~I~~~g~ 144 (347)
.+..|..++|||++|+|||||+++|+|.-.. ....|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999987210 001167788887663
No 220
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.27 E-value=0.00012 Score=62.68 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=23.4
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998644
No 221
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.24 E-value=2.5e-05 Score=75.53 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=33.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.+.|++..|+.. .+ +++++|.| +|+|++|+|||||++.|.+...
T Consensus 16 ~~v~~~~l~~~~~~k---~~---~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 16 GYVGFANLPNQVHRK---SV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp -----CCHHHHHHTH---HH---HHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred ceEEeccchHHhCCe---ee---cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 358889998888642 23 45588877 9999999999999999987654
No 222
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.20 E-value=0.00016 Score=61.90 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++|||||||++.+++...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998643
No 223
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.20 E-value=0.00016 Score=60.81 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987764
No 224
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.20 E-value=0.00017 Score=65.73 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=32.6
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
..+.+.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHHH
Confidence 345678899999999999999999998775 25677777443
No 225
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.16 E-value=0.00014 Score=66.01 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=24.6
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++.+++| +.|+||+|+|||||+++|++.+.
T Consensus 40 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 55555666 88999999999999999999875
No 226
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.16 E-value=5.3e-05 Score=73.27 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=31.7
Q ss_pred ceeeEEEecCCeE--EEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~--~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4458888899988 99999999999999999998764
No 227
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.15 E-value=0.00021 Score=64.22 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=24.6
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999999744
No 228
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.13 E-value=0.00025 Score=60.26 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 229
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.11 E-value=0.00065 Score=58.29 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|++|||||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999976654
No 230
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.04 E-value=0.00013 Score=63.90 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.6
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
No 231
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.04 E-value=7.2e-05 Score=71.03 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=32.7
Q ss_pred ceeeEEEecCCeE--EEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~--~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.++..|+.|++ +.|.||+|+||||+++++++.+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4558888999988 99999999999999999999987
No 232
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.02 E-value=0.00032 Score=58.63 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHH
Q 019048 105 SLLLIGPKGSGKSSLVNRI 123 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L 123 (347)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 233
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.00 E-value=0.00036 Score=59.63 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998664
No 234
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.00 E-value=0.00034 Score=60.47 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998664
No 235
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.99 E-value=0.00037 Score=59.82 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=23.9
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998755
No 236
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.99 E-value=0.00043 Score=61.13 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhh
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.+-+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 237
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.98 E-value=0.00034 Score=63.70 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999544
No 238
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.95 E-value=0.00039 Score=66.92 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.5
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999888876554
No 239
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.91 E-value=0.00046 Score=63.06 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+||+|||||||.+.|++-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998654
No 240
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.90 E-value=0.00047 Score=59.01 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.8
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+..+.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999987653
No 241
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.90 E-value=0.00037 Score=59.39 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999997664
No 242
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.88 E-value=0.00054 Score=59.22 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999864
No 243
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.88 E-value=0.00041 Score=68.78 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=35.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++.+++++|++||||||++..|+..+. +..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecCcc
Confidence 578999999999999999999999998 77788888666653
No 244
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.88 E-value=0.0006 Score=72.27 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=25.5
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..|+.+.|+||+||||||++.++.....
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 356788999999999999999999876554
No 245
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.87 E-value=0.00059 Score=59.13 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+|-+++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998765
No 246
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.85 E-value=0.0003 Score=60.14 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.6
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
..+.++.|+|++||||||+++.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998654
No 247
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.85 E-value=0.00041 Score=65.53 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=29.6
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444655689999999999999999999988875443
No 248
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.85 E-value=0.00057 Score=57.80 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.85 E-value=0.00033 Score=74.64 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=28.6
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|.+++++.++|+||+|||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999999999875
No 250
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.83 E-value=0.00054 Score=60.20 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|+||||||||||++.|..-++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999876553
No 251
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.82 E-value=0.00068 Score=58.86 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998776
No 252
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.81 E-value=0.00066 Score=65.71 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=31.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
.+..++|+|++|||||||++.|...+. +..+.|.+-+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEEe
Confidence 566899999999999999999998887 6667776643
No 253
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.79 E-value=0.00063 Score=58.48 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++.+++|+|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677999999999999999999987553
No 254
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.77 E-value=0.00096 Score=64.61 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=30.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc------CCCCCCCCcEEEECC
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNS 143 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~------~~~~~p~~G~I~~~g 143 (347)
|-.++|||.+|+|||||++.|++--. .....|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 001126778888766
No 255
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.77 E-value=0.00095 Score=62.26 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
.+..+.|.|||||||||+.+.|..-++ .+.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence 456899999999999999999987553 25566654
No 256
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.75 E-value=0.00071 Score=59.01 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987654
No 257
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.75 E-value=0.00069 Score=58.79 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998653
No 258
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.00087 Score=57.28 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=22.2
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998654
No 259
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.73 E-value=0.00072 Score=58.55 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.9
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+++|+|++|||||||++.|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999999876
No 260
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.73 E-value=0.00077 Score=58.81 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.3
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|-+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999997664
No 261
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.72 E-value=0.00093 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=21.2
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.-.++|+|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 262
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.0021 Score=56.16 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999887643
No 263
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.70 E-value=0.001 Score=61.58 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=26.9
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I 139 (347)
..+.|+||+|+|||||+++|++.+. +..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-----DTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-----CCCcce
Confidence 5799999999999999999999987 655544
No 264
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.68 E-value=0.0012 Score=57.16 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997653
No 265
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.68 E-value=0.0024 Score=55.26 Aligned_cols=23 Identities=52% Similarity=0.663 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.|.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 266
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.68 E-value=0.0008 Score=57.43 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
No 267
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.68 E-value=0.0011 Score=61.94 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=26.0
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++++..+.|.||+|+|||||+++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 456677899999999999999999998764
No 268
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.67 E-value=0.00076 Score=61.91 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998754
No 269
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.001 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|++|||||||++.|.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
No 270
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.63 E-value=0.00095 Score=57.37 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|.|+.||||||+++.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
No 271
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.62 E-value=0.0023 Score=60.69 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=34.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh----cccCCCCCCCCcEEEECC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK----VFENDKFASERAQVTYNS 143 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g----l~~~~~~~p~~G~I~~~g 143 (347)
++...+++ .|.-++|+|+||+|||||+..|.+ ++. .+...|...+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~-----dD~~~i~~~~ 183 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVA-----DDNVEIREIS 183 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEE-----SSEEEEEESS
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceec-----CCeEEEEEcC
Confidence 33488888 788999999999999999999987 555 4555555544
No 272
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.61 E-value=0.0011 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998743
No 273
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.60 E-value=0.00076 Score=57.40 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987654
No 274
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.56 E-value=0.0013 Score=54.09 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 275
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.55 E-value=0.0013 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998754
No 276
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.55 E-value=0.0024 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 277
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.54 E-value=0.0013 Score=58.13 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999987654
No 278
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0013 Score=54.35 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 279
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.53 E-value=0.0012 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998643
No 280
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.53 E-value=0.0013 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 281
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.53 E-value=0.0039 Score=52.34 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 282
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.52 E-value=0.0012 Score=56.91 Aligned_cols=29 Identities=24% Similarity=0.530 Sum_probs=24.8
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.+.+++|+|++||||||+.+.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45567899999999999999999987653
No 283
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.52 E-value=0.0011 Score=54.96 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 578999999999999999987543
No 284
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.52 E-value=0.0014 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57899999999999999998643
No 285
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.50 E-value=0.0014 Score=54.16 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 286
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.50 E-value=0.0024 Score=52.67 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 287
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.50 E-value=0.0014 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 288
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.50 E-value=0.0017 Score=54.36 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+.-.++|+|++|||||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999864
No 289
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.50 E-value=0.0013 Score=57.67 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976543
No 290
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.49 E-value=0.0015 Score=54.73 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988743
No 291
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.48 E-value=0.0014 Score=54.29 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998644
No 292
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.47 E-value=0.0014 Score=59.50 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.++|+|++|+|||||++.|.|--.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3689999999999999999998543
No 293
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.46 E-value=0.0012 Score=55.59 Aligned_cols=24 Identities=13% Similarity=0.594 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++||||||+.+.|+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 294
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.46 E-value=0.0016 Score=54.50 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998643
No 295
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.46 E-value=0.0014 Score=54.22 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
No 296
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=54.83 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|||||||++.|.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998643
No 297
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.45 E-value=0.0015 Score=55.83 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 298
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.44 E-value=0.0015 Score=58.17 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=22.4
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++.+++|+|++||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998654
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.44 E-value=0.0016 Score=54.82 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987654
No 300
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.43 E-value=0.0017 Score=56.48 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+-+++|+|+.||||||+.+.|+..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999987654
No 301
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.43 E-value=0.0015 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 302
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.42 E-value=0.0017 Score=54.49 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987553
No 303
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.42 E-value=0.0014 Score=55.95 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
--.++|+|+.|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 304
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.42 E-value=0.0014 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|+.|||||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 368999999999999999998754
No 305
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.41 E-value=0.0017 Score=55.13 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|+.|+|||||++.|.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998753
No 306
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.41 E-value=0.0019 Score=56.05 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
...+++|.|++||||||+.+.|+.-+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44689999999999999999998654
No 307
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.41 E-value=0.0016 Score=57.20 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
No 308
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.40 E-value=0.0016 Score=60.36 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|||||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 309
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.39 E-value=0.0018 Score=53.44 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
No 310
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.38 E-value=0.0007 Score=67.86 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=28.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 33366677777 78999999999999999998654
No 311
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.37 E-value=0.003 Score=60.26 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=26.1
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999998875
No 312
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.37 E-value=0.0014 Score=56.09 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999987654
No 313
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.37 E-value=0.0017 Score=58.88 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+++|.|++||||||+.+.|...+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987553
No 314
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.37 E-value=0.0019 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 315
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.36 E-value=0.0015 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.5
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987553
No 316
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.36 E-value=0.0019 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 317
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.35 E-value=0.0025 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.6
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998876
No 318
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.35 E-value=0.002 Score=56.55 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998776
No 319
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.34 E-value=0.0013 Score=58.99 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=22.7
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.+.+|+.++|+||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 346789999999999999998887653
No 320
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.34 E-value=0.0015 Score=57.83 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445789999999999999999987654
No 321
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.33 E-value=0.002 Score=53.07 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 322
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.33 E-value=0.002 Score=55.01 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.|.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
No 323
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.32 E-value=0.0017 Score=55.00 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998743
No 324
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.32 E-value=0.0022 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 325
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.29 E-value=0.0021 Score=56.53 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.-+++|+|+.||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998753
No 326
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.29 E-value=0.002 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 327
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.29 E-value=0.0022 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998644
No 328
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0022 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 329
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.28 E-value=0.0022 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 330
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.27 E-value=0.0023 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|+.|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 578999999999999999998765
No 331
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.26 E-value=0.0027 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.667 Sum_probs=20.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhh
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-.++|+|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999975
No 332
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.26 E-value=0.0018 Score=59.58 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||+|.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
No 333
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.25 E-value=0.0023 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++++|+.|||||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 334
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.25 E-value=0.0011 Score=61.87 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++-+++|.|++||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455899999999999999999988654
No 335
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.24 E-value=0.005 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 336
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.24 E-value=0.0036 Score=59.15 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.2
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-+++|+++.|.||+|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999999988654
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.24 E-value=0.0026 Score=58.07 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 338
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.23 E-value=0.0025 Score=53.47 Aligned_cols=23 Identities=52% Similarity=0.661 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 339
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.0019 Score=60.90 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.|.||+|+|||||++.+++.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999886
No 340
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.22 E-value=0.0028 Score=57.37 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++-+++|.|++||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
No 341
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.20 E-value=0.0023 Score=60.04 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+++|+|.+|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999975
No 342
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.0018 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHhh
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+.-.++|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999873
No 343
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.19 E-value=0.0052 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.18 E-value=0.0026 Score=55.48 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 345
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.17 E-value=0.0025 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 346
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.16 E-value=0.0028 Score=53.98 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.|.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998744
No 347
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.16 E-value=0.0028 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 348
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.15 E-value=0.0026 Score=59.78 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+++|+|+.|+|||||++.|.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999853
No 349
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.005 Score=52.47 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=20.6
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999873
No 350
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.14 E-value=0.0043 Score=58.79 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=22.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|.||+|+|||||++.+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999999887
No 351
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.14 E-value=0.0048 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 352
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.0023 Score=61.28 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
..-.++|+|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998854
No 353
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.14 E-value=0.0029 Score=53.91 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 354
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.13 E-value=0.0016 Score=57.03 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|++|||||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998854
No 355
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.13 E-value=0.0025 Score=58.38 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 356
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.13 E-value=0.0025 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|++|||||||++.|.+-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998743
No 357
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.12 E-value=0.003 Score=58.17 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++..+.|.||+|+|||||+++|++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 345689999999999999999998654
No 358
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.10 E-value=0.0028 Score=54.31 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 359
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.10 E-value=0.0033 Score=52.72 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998775
No 360
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.09 E-value=0.0056 Score=51.41 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999984
No 361
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.09 E-value=0.003 Score=56.23 Aligned_cols=23 Identities=35% Similarity=0.736 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998655
No 362
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.09 E-value=0.0035 Score=52.54 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
--.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999863
No 363
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.09 E-value=0.0052 Score=52.98 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.1
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.-.++|+|+.|+|||||++.+.+-..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCC
Confidence 34689999999999999999987543
No 364
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.09 E-value=0.0026 Score=58.97 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.8
Q ss_pred CeEEEEECCCCChHHHHHHHHhh
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-+++|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 365
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.08 E-value=0.0032 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 366
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.04 E-value=0.0034 Score=54.20 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 367
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.03 E-value=0.0064 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 368
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.03 E-value=0.0034 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998744
No 369
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.03 E-value=0.003 Score=55.83 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|-++.|+|+.||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999987653
No 370
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.02 E-value=0.0035 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
No 371
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.02 E-value=0.004 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.4
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++.-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998644
No 372
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.02 E-value=0.0031 Score=55.17 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.++|+|+.|||||||++.|++-+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999987653
No 373
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.02 E-value=0.0029 Score=61.29 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|||++|+|||||+++|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
No 374
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0032 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 375
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0036 Score=53.08 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 376
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.00 E-value=0.0027 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998765
No 377
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.00 E-value=0.0033 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998744
No 378
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.99 E-value=0.0034 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 379
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.98 E-value=0.0033 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.|.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
No 380
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.98 E-value=0.0036 Score=57.27 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|||||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 381
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.97 E-value=0.0033 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 382
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.96 E-value=0.0039 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 383
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0039 Score=53.47 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.6
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 384
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0035 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.520 Sum_probs=20.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhh
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-.++|+|+.|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
No 385
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.95 E-value=0.0034 Score=57.87 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|..|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998854
No 386
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.95 E-value=0.0039 Score=53.85 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=21.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.-.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 387
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.94 E-value=0.004 Score=53.64 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998643
No 388
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.94 E-value=0.0034 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
No 389
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.91 E-value=0.0038 Score=59.88 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.3
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987664
No 390
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.91 E-value=0.0032 Score=53.28 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=20.0
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
-.++|+|+.|+|||||++.+.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999986
No 391
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.91 E-value=0.0032 Score=58.94 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=22.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||++.|++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578999999999999999999876
No 392
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.91 E-value=0.0036 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=22.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999998755
No 393
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.90 E-value=0.0032 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 394
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.89 E-value=0.0038 Score=54.00 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 395
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.88 E-value=0.004 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 396
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.88 E-value=0.0043 Score=57.25 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 397
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.86 E-value=0.0073 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 398
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.86 E-value=0.0047 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999988764
No 399
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.85 E-value=0.0045 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.85 E-value=0.005 Score=54.96 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.++.|+|+.||||||+.+.|+.-+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987654
No 401
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.85 E-value=0.0052 Score=58.88 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.++.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 556899999999999999999997654
No 402
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.84 E-value=0.0046 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998643
No 403
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.82 E-value=0.0046 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=20.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3446899999999999999999854
No 404
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.82 E-value=0.0048 Score=56.33 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 444588999999999999999988664
No 405
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.80 E-value=0.0044 Score=56.53 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.|.+-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999743
No 406
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.78 E-value=0.0074 Score=53.70 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=24.9
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-+++ .|..++|+||+|||||||...|+.
T Consensus 28 ~~v~~-~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 28 VLVDI-YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 66665 678899999999999999998875
No 407
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.78 E-value=0.0031 Score=53.12 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=9.3
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
No 408
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.78 E-value=0.0044 Score=56.71 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++++|++|+|||||++.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 409
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.77 E-value=0.0054 Score=54.73 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.2
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+|-+++|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999998876
No 410
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.75 E-value=0.0046 Score=54.09 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 411
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.74 E-value=0.0048 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 412
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.72 E-value=0.0047 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.9
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
...+.|.||+|+|||||++.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999998775
No 413
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.72 E-value=0.0044 Score=56.94 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|..|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 414
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.72 E-value=0.0043 Score=56.06 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=22.9
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+|-++.|.|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999998775
No 415
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0053 Score=52.37 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 416
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.70 E-value=0.0051 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 688999999999999999887544
No 417
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.69 E-value=0.0051 Score=56.57 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.++++|.+|+|||||+|.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5789999999999999999998654
No 418
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.68 E-value=0.0063 Score=59.64 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=24.1
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.-....++.|+|++||||||+.+.|+.-+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34467899999999999999999987533
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.65 E-value=0.0054 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=21.3
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.++|+|+.|||||||++.++.-..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999987643
No 420
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.63 E-value=0.0054 Score=55.70 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999998876
No 421
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.62 E-value=0.0029 Score=55.16 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.|.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998853
No 422
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.62 E-value=0.0066 Score=54.39 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.+++|.|..||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
No 423
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.61 E-value=0.006 Score=58.10 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..++|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
No 424
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.60 E-value=0.0071 Score=57.48 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.+++|+||+|||||||...|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999986553
No 425
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.60 E-value=0.0071 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.9
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.-+.|.||+|+|||||++.|+..+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4478999999999999999998664
No 426
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.60 E-value=0.0061 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999998775
No 427
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.59 E-value=0.0063 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHhh
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999864
No 428
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.58 E-value=0.0048 Score=61.65 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=27.7
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.+-+|+.++|+|++|+|||||++.|..-..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5677899999999999999999999987665
No 429
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.58 E-value=0.0051 Score=55.98 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.6
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..++-+++|.|+.||||||+++.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35778999999999999999999987764
No 430
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0069 Score=53.65 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|||++|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 431
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.51 E-value=0.0064 Score=54.56 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=26.2
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+-.+++..++.|+||.||||+|..+.|+.-+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 33566778899999999999999999986653
No 432
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.51 E-value=0.0045 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=20.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhh
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345699999999999999999853
No 433
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.51 E-value=0.0055 Score=60.64 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|.+|+|||||++.|+|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999854
No 434
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.50 E-value=0.0078 Score=54.23 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+|-+++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998776
No 435
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.50 E-value=0.0068 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999754
No 436
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.50 E-value=0.0023 Score=68.05 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=30.0
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++.+.++..++|+||+|||||||+++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366788999999999999999999999999886
No 437
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.49 E-value=0.0068 Score=54.11 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.++.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998886
No 438
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.47 E-value=0.0032 Score=54.03 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=4.3
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998865
No 439
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.47 E-value=0.007 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.2
Q ss_pred CeEEEEECCCCChHHHHHHHHhh
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-.++|+|+.|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999998875
No 440
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.47 E-value=0.0018 Score=58.72 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=24.0
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.| +.|.||+|+|||||+++|+....
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 3344555 77999999999999999998654
No 441
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.0078 Score=52.89 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 442
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.46 E-value=0.0076 Score=53.98 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+|.++.+-|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999887
No 443
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.44 E-value=0.0081 Score=56.34 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
-+++|+++.|.|++|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
No 444
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.39 E-value=0.0084 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 445
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.37 E-value=0.0092 Score=57.44 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.9
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|.++.|.|++|||||||+..++.-..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988876554
No 446
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.28 E-value=0.0088 Score=51.80 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|+.|+|||||++.+.+-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999853
No 447
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.26 E-value=0.0094 Score=49.23 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.-+.|.||+|+|||++++.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 445688999999999999999987654
No 448
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.21 E-value=0.012 Score=52.04 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.4
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHh
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
+++|+++.|.|++|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999999986543
No 449
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.18 E-value=0.017 Score=50.24 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.8
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-+++ .|.-++|.|+||+|||||.-.|..
T Consensus 10 s~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 55555 678899999999999999987753
No 450
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.14 E-value=0.013 Score=55.63 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
...++|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987654
No 451
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.13 E-value=0.0083 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=22.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||++++++.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999998864
No 452
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.12 E-value=0.011 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.|+||.||||+|..+.|+.-+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997664
No 453
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.12 E-value=0.012 Score=54.72 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.+-.++|+|.+|+|||||+|.|.|-.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34578999999999999999999865
No 454
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.11 E-value=0.009 Score=58.96 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999998774
No 455
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.09 E-value=0.011 Score=54.44 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.|.||+|+|||||++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999998775
No 456
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.09 E-value=0.0042 Score=61.45 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=29.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
.+++|+|++|+||||++..|++.+. .....|.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~-----~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ-----KRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH-----HHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecc
Confidence 5899999999999999999999887 443456554434
No 457
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.08 E-value=0.015 Score=57.63 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999887
No 458
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.03 E-value=0.012 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|.||.|+|||||++.++..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999987664
No 459
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.96 E-value=0.018 Score=54.96 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999998775
No 460
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.85 E-value=0.0096 Score=52.06 Aligned_cols=23 Identities=39% Similarity=0.839 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHH-Hhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNR-ISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~-L~gl~ 127 (347)
.++|+|+.|||||||++. +.+-.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 578999999999999998 55543
No 461
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.83 E-value=0.014 Score=54.50 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.8
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999997764
No 462
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.80 E-value=0.023 Score=50.49 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 019048 105 SLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~ 124 (347)
.++|||.+|+|||||++.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~ 34 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHH
Confidence 58899999999999999875
No 463
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.77 E-value=0.02 Score=54.07 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|..+.|.||+|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999999886
No 464
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.76 E-value=0.014 Score=55.57 Aligned_cols=25 Identities=40% Similarity=0.898 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+||||++++|+..+.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999998764
No 465
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.75 E-value=0.013 Score=57.62 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|||++|+|||||++.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 466
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.74 E-value=0.013 Score=55.29 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.|.||+|+|||||++.++..+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998775
No 467
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.74 E-value=0.0054 Score=52.94 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
-.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4689999999999999988864
No 468
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.72 E-value=0.014 Score=56.27 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++..++++|.+|+|||||+|.|.+..
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhc
Confidence 45679999999999999999999874
No 469
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.71 E-value=0.0034 Score=54.05 Aligned_cols=21 Identities=52% Similarity=0.792 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|++|+|||||++.|.+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998875
No 470
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.71 E-value=0.018 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.7
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|.+++|=|.-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998775
No 471
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.69 E-value=0.017 Score=56.68 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987664
No 472
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.69 E-value=0.017 Score=55.19 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.6
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+.++++---.++|+|.++||||||++.|++-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 5566665556899999999999999998864
No 473
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.68 E-value=0.011 Score=56.34 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|..|||||||++.|.|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 474
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.67 E-value=0.015 Score=53.19 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=22.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||++.|+..+.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577999999999999999998775
No 475
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.66 E-value=0.011 Score=58.76 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+.|-.++|+|++|+|||||+|.|.+-.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345569999999999999999999853
No 476
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.63 E-value=0.017 Score=52.45 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||++.|+....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3578999999999999999998653
No 477
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.60 E-value=0.023 Score=49.18 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCChHHHHH-HHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLV-NRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLl-k~L~gl~~ 128 (347)
+|.++.|.||.||||||++ +++..+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999997 55555543
No 478
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.58 E-value=0.019 Score=54.08 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
..-+.|.||.|+|||||++.++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3458899999999999999999876
No 479
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.53 E-value=0.02 Score=51.87 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.+||+|+.||||||+.+.|+.-+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987553
No 480
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.51 E-value=0.018 Score=58.09 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|-.+.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999999886
No 481
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.51 E-value=0.02 Score=51.22 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.5
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++.-.+.|.||.|+||||++.+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 66666789999999999999999999875
No 482
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.51 E-value=0.017 Score=56.39 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|.+|+|||||++.|.+--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998754
No 483
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.46 E-value=0.021 Score=58.42 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|-++.|.|.+||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999998775
No 484
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.43 E-value=0.015 Score=56.06 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++..++++|.+|+|||||+|.|.+-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999874
No 485
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.40 E-value=0.021 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|.||+|+|||+|+++|+.-+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477889999999999999998764
No 486
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.37 E-value=0.029 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=22.7
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+..+.|.||+|+|||+|++.|.....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45688999999999999999998765
No 487
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.29 E-value=0.025 Score=53.01 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=21.7
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.-+.|.||+|+|||+|+++|+....
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3578999999999999999987654
No 488
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.22 E-value=0.019 Score=58.36 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|..|+|||||+|.|.|--
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999853
No 489
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.20 E-value=0.026 Score=52.90 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.2
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+..+.|.||+|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987653
No 490
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.20 E-value=0.027 Score=53.75 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
....+.|.||+|+|||||+++|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 445689999999999999999987653
No 491
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.19 E-value=0.026 Score=54.53 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=25.4
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+++|.++.|.|++|||||||+..++.-..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 378999999999999999999977765443
No 492
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.17 E-value=0.026 Score=53.80 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-+++|..+.|.||.|||||||+..++.-
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5778888999999999999999998753
No 493
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.13 E-value=0.024 Score=53.01 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|.||+|+|||||++.|+....
T Consensus 58 vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECcCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987654
No 494
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.11 E-value=0.024 Score=54.15 Aligned_cols=25 Identities=40% Similarity=0.836 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||++.|+..+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998764
No 495
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.10 E-value=0.025 Score=55.73 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=29.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 333544589999999999999999999998887654
No 496
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.09 E-value=0.027 Score=58.19 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.++.|+|.+||||||+.+.|...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998763
No 497
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.08 E-value=0.021 Score=58.67 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
--+++|+|+.|+|||||+|.|.|-.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3578999999999999999999864
No 498
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.01 E-value=0.029 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||.|+|||||++.++..+.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998764
No 499
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.01 E-value=0.029 Score=54.99 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=24.4
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.-++| +.|.||.|||||+|+++|++-..
T Consensus 179 i~~prG--vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKG--VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCC--EEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCc--eEEeCCCCCCHHHHHHHHHHhhC
Confidence 344566 78999999999999999998765
No 500
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.01 E-value=0.027 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++++|+.|+|||||++.|.+...
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 689999999999999999998543
Done!