Query 019050
Match_columns 347
No_of_seqs 141 out of 712
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 2E-107 4E-112 841.1 30.9 317 20-345 1-323 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 5.1E-93 1.1E-97 755.8 24.7 269 70-345 267-556 (784)
3 PLN02592 ent-copalyl diphospha 100.0 2.3E-90 5E-95 734.1 26.1 272 70-345 307-612 (800)
4 PF01397 Terpene_synth: Terpen 100.0 1E-58 2.3E-63 419.8 15.8 175 30-212 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 99.8 3.5E-19 7.5E-24 165.7 5.5 101 243-343 1-101 (270)
6 cd00868 Terpene_cyclase_C1 Ter 99.5 2.6E-14 5.6E-19 134.0 8.3 88 257-344 1-88 (284)
7 cd00687 Terpene_cyclase_nonpla 97.6 0.00014 3.1E-09 69.6 7.1 79 264-343 18-98 (303)
8 PRK09177 xanthine-guanine phos 41.9 8.4 0.00018 34.1 -0.0 22 315-336 87-108 (156)
9 PF00156 Pribosyltran: Phospho 38.4 13 0.00028 30.3 0.6 20 315-334 91-110 (125)
10 COG3063 PilF Tfp pilus assembl 35.0 4.4E+02 0.0094 25.7 10.7 151 53-249 52-219 (250)
11 COG2236 Predicted phosphoribos 31.7 25 0.00053 32.7 1.3 23 315-337 90-112 (192)
12 TIGR00201 comF comF family pro 31.5 15 0.00033 33.1 -0.1 20 315-334 155-174 (190)
13 PRK11595 DNA utilization prote 30.8 16 0.00034 34.2 -0.2 20 315-334 190-209 (227)
14 PRK05205 bifunctional pyrimidi 27.5 27 0.00057 31.3 0.8 20 315-334 98-117 (176)
15 COG1040 ComFC Predicted amidop 27.2 29 0.00063 32.7 1.0 21 315-335 187-207 (225)
16 PF11848 DUF3368: Domain of un 26.1 31 0.00068 24.6 0.8 24 125-148 21-44 (48)
17 cd07604 BAR_ASAPs The Bin/Amph 23.9 1.8E+02 0.0039 27.3 5.6 86 46-150 12-100 (215)
18 PRK09162 hypoxanthine-guanine 23.5 29 0.00063 31.3 0.2 52 164-218 8-68 (181)
19 TIGR01203 HGPRTase hypoxanthin 23.5 35 0.00075 30.4 0.7 22 314-335 86-107 (166)
20 TIGR01090 apt adenine phosphor 23.4 34 0.00074 30.3 0.7 22 314-335 111-132 (169)
21 PRK02304 adenine phosphoribosy 23.3 39 0.00085 30.1 1.0 22 314-335 116-137 (175)
22 PRK07322 adenine phosphoribosy 22.2 39 0.00085 30.4 0.8 22 314-335 122-143 (178)
23 KOG3951 Uncharacterized conser 21.5 1.2E+02 0.0027 29.7 4.0 57 149-213 264-320 (321)
24 TIGR01367 pyrE_Therm orotate p 21.0 43 0.00094 30.5 0.8 22 314-335 107-128 (187)
25 COG2976 Uncharacterized protei 20.2 73 0.0016 30.0 2.2 37 258-303 7-43 (207)
26 PRK15423 hypoxanthine phosphor 20.1 46 0.001 30.2 0.8 22 315-336 95-116 (178)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.9e-107 Score=841.07 Aligned_cols=317 Identities=56% Similarity=0.942 Sum_probs=297.3
Q ss_pred CCCCCCCCCCCcc-ccccccCCcccchHHHHHHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHHHHhCcccccHHHH
Q 019050 20 RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTA--WKTLEEIVAIVNQLQRLGVAYHFENEI 96 (347)
Q Consensus 20 r~~a~~~psiW~d-~fl~~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~~~~--~~d~~~~L~lID~LqRLGI~~hFe~EI 96 (347)
||+++||||+||| .|++++++.. ....+.+++++||++||+||.. . +.|++++|+|||+||||||+|||++||
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~-~~~~~~~~~~~lk~~v~~~~~~---~~~~~~~~~~l~liD~lqrLGi~~hF~~EI 76 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLED---SEYPVDLFERLWLIDRLQRLGISYHFEDEI 76 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcc-hhHHHHHHHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHHHcCchhhhHHHH
Confidence 7899999999999 6666654432 2226889999999999999985 4 679999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHHhhhcCcccccccccccccccccccccchhhHHHHHHHhhhhhccC
Q 019050 97 KEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRV 176 (347)
Q Consensus 97 ~~~L~~iy~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~ 176 (347)
+++|++||++|.+. +.....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++
T Consensus 77 ~~~L~~i~~~~~~~----~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~ 152 (542)
T cd00684 77 KEILDYIYRYWTER----GESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSF 152 (542)
T ss_pred HHHHHHHHHhhccc----ccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCC
Confidence 99999999988542 11235799999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhhc---CCCchHHHHHHhccCCccCCcchhHHhhhHHhhhcCCccccHHHHHHHHhhhHH
Q 019050 177 QGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNL 253 (347)
Q Consensus 177 ~gE~iLdeA~~Ft~~~L~~~~~~---~~~~L~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~~n~~lLelAKlDFn~ 253 (347)
|||+|||||+.||++||++.+++ ++++|+++|+|||++|||+++||||||+||++|+++++ +|++||||||+|||+
T Consensus 153 ~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~-~n~~lLelAkldfn~ 231 (542)
T cd00684 153 PGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDD-HNETLLELAKLDFNI 231 (542)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCcc-ccHHHHHHHHHHHHH
Confidence 99999999999999999999886 78999999999999999999999999999999999999 999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhhhcccCCCChhhHHHHHHHHHhhheecccccccCCHHHHHH
Q 019050 254 LQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKL 333 (347)
Q Consensus 254 ~Q~~hq~EL~~lsrWwk~l~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~tK~~~litiiDD~yD~yGTleEL~~ 333 (347)
||++||+||++++|||+++||..+|||||+|++|||||++|++|||++|.+|+++||++++++++||+||+|||+|||+.
T Consensus 232 ~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ 311 (542)
T cd00684 232 LQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELEL 311 (542)
T ss_pred HhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccC
Q 019050 334 FTHAIERCVQIN 345 (347)
Q Consensus 334 ft~aV~RWD~~~ 345 (347)
||+||+|||+++
T Consensus 312 ft~ai~rwd~~~ 323 (542)
T cd00684 312 FTEAVERWDISA 323 (542)
T ss_pred HHHHHHhccccc
Confidence 999999999754
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=5.1e-93 Score=755.84 Aligned_cols=269 Identities=33% Similarity=0.526 Sum_probs=253.2
Q ss_pred cccHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHHhhhcCccccccccccccc
Q 019050 70 WKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRD 149 (347)
Q Consensus 70 ~~d~~~~L~lID~LqRLGI~~hFe~EI~~~L~~iy~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~F~d 149 (347)
+.++++++++||+||||||+|||++||+++|+++|++|.+. ......|+++|||+|||||||||+||||||++|+|
T Consensus 267 p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~----~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~ 342 (784)
T PLN02279 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQG----EEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAE 342 (784)
T ss_pred cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhccc----ccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCC
Confidence 46899999999999999999999999999999999988641 12235799999999999999999999999999996
Q ss_pred ccccccccc---hhhHHHHHHHhhhhhccCCCchHHHHHHHHHHHHHHHHhhc-------CCCchHHHHHHhccCCccCC
Q 019050 150 EKGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH-------LSTPLVDQVEHSLEIPLHRG 219 (347)
Q Consensus 150 ~~G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~-------~~~~L~~~V~~aL~~P~~~~ 219 (347)
++ |++++ .+||+||||||||||+++|||+|||||+.||++||++.+++ ++++|+++|+|||++|||++
T Consensus 343 ~~--F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~ 420 (784)
T PLN02279 343 DH--FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYAN 420 (784)
T ss_pred Cc--ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcC
Confidence 54 99988 58999999999999999999999999999999999998764 57789999999999999999
Q ss_pred cchhHHhhhHHhhhcCCc-----------cccHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHhCCCCCCCcchhhHHHH
Q 019050 220 MPRLEARQYISIYEADNS-----------TRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 288 (347)
Q Consensus 220 l~Rlear~yI~~Y~~~~~-----------~~n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~l~l~~~L~faRdr~ve~ 288 (347)
+||||||+||++|++++. ++|++||||||+|||+||++||+||++|+|||+++|| .+|||||||+|||
T Consensus 421 l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~ 499 (784)
T PLN02279 421 LERLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYC 499 (784)
T ss_pred ccHHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHH
Confidence 999999999999988763 3799999999999999999999999999999999999 6999999999999
Q ss_pred HHHhhhcccCCCChhhHHHHHHHHHhhheecccccccCCHHHHHHHHHHHHhhhccC
Q 019050 289 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCVQIN 345 (347)
Q Consensus 289 yfw~~~~~feP~~s~~R~~~tK~~~litiiDD~yD~yGTleEL~~ft~aV~RWD~~~ 345 (347)
|||++|++||||||.+|++|||+++|+|+|||+||+|||+|||++||+||+|||+++
T Consensus 500 Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~ 556 (784)
T PLN02279 500 YFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNG 556 (784)
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999873
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=2.3e-90 Score=734.14 Aligned_cols=272 Identities=34% Similarity=0.537 Sum_probs=252.4
Q ss_pred cccHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCCCCC---CCCCchhHHHHHHHHhhhcCcccccccccc
Q 019050 70 WKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNY---DHNNDLYIVALRFRLLRQHGYKVSADIFKK 146 (347)
Q Consensus 70 ~~d~~~~L~lID~LqRLGI~~hFe~EI~~~L~~iy~~~~~~~~~~~~---~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~ 146 (347)
+.+++++|+|||+||||||+|||++||+++|+++|++|.+. |+.+ ....|+++|||+|||||||||+||||||++
T Consensus 307 P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~--g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~ 384 (800)
T PLN02592 307 PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTEN--GICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKH 384 (800)
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhc--CcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHh
Confidence 46899999999999999999999999999999999988642 2222 124799999999999999999999999999
Q ss_pred cccccccccccc---hhhHHHHHHHhhhhhccCCCchHHHHHHHHHHHHHHHHhh--c------CCCchHHHHHHhccCC
Q 019050 147 FRDEKGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS--H------LSTPLVDQVEHSLEIP 215 (347)
Q Consensus 147 F~d~~G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~--~------~~~~L~~~V~~aL~~P 215 (347)
|++ +|+|++.+ .+|++|||+|||||||++|||.|||+|+.||+++|++.+. + ++++|+++|+|||++|
T Consensus 385 F~~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P 463 (800)
T PLN02592 385 FEK-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIP 463 (800)
T ss_pred hcC-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccCh
Confidence 996 89998665 7999999999999999999999999999999999999853 1 3678999999999999
Q ss_pred ccCCcchhHHhhhHHhhhcCCc------------cccHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHhCCCCCCCcchh
Q 019050 216 LHRGMPRLEARQYISIYEADNS------------TRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARD 283 (347)
Q Consensus 216 ~~~~l~Rlear~yI~~Y~~~~~------------~~n~~lLelAKlDFn~~Q~~hq~EL~~lsrWwk~l~l~~~L~faRd 283 (347)
||++|||||||+||++|+++++ ++|+.||||||+|||+||++||+||++|+||||++||. +||||||
T Consensus 464 ~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~-~L~faRd 542 (800)
T PLN02592 464 WYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLG-EFGVSRS 542 (800)
T ss_pred hhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCC-cCCcchh
Confidence 9999999999999999998765 24999999999999999999999999999999999995 9999999
Q ss_pred hHHHHHHHhhhcccCCCChhhHHHHHHHHHhhheecccccccCCHHHHHHHHHHHH--------hhhccC
Q 019050 284 RLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIE--------RCVQIN 345 (347)
Q Consensus 284 r~ve~yfw~~~~~feP~~s~~R~~~tK~~~litiiDD~yD~yGTleEL~~ft~aV~--------RWD~~~ 345 (347)
|+||||||++|++||||||.+|++|||+++|+|+|||+||+|||+|||++||+||+ |||.++
T Consensus 543 r~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~ 612 (800)
T PLN02592 543 ELLLAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHF 612 (800)
T ss_pred HHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchh
Confidence 99999999999999999999999999999999999999999999999999999997 999754
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=1e-58 Score=419.76 Aligned_cols=175 Identities=52% Similarity=0.856 Sum_probs=148.4
Q ss_pred CccccccccCCc-----ccchHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHhCcccccHHHHHHHHHHHH
Q 019050 30 WGDHFINVSSNE-----KYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY 104 (347)
Q Consensus 30 W~d~fl~~~~~~-----~~~~~~~~~~~e~Lk~eVr~ml~~~~~~~~d~~~~L~lID~LqRLGI~~hFe~EI~~~L~~iy 104 (347)
|||+|+++.+++ ....+.+.+++++||++||.||.+ ...++.++|+|||+||||||+|||++||+++|+++|
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~---~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 77 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPA---SYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIY 77 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHS---SSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 999999532211 122478899999999999999986 334899999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCCchhHHHHHHHHhhhcCcccccccccccccccccccccchhhHHHHHHHhhhhhccCCCchHHHH
Q 019050 105 DSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 184 (347)
Q Consensus 105 ~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLde 184 (347)
+.|... .....||++|||+|||||||||+||||||++|+|++|+|+.++++||+|||||||||||+++||+|||+
T Consensus 78 ~~~~~~-----~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLde 152 (183)
T PF01397_consen 78 RSWDED-----NEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDE 152 (183)
T ss_dssp HTTTTT-----SHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHH
T ss_pred hhcccc-----ccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHH
Confidence 988642 112349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC---chHHHHHHhc
Q 019050 185 ACEFSRKHLKSLLSHLST---PLVDQVEHSL 212 (347)
Q Consensus 185 A~~Ft~~~L~~~~~~~~~---~L~~~V~~aL 212 (347)
|+.||++||++.+++..+ +|+++|+|||
T Consensus 153 A~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 153 ARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 999999999999986543 4999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.76 E-value=3.5e-19 Score=165.68 Aligned_cols=101 Identities=39% Similarity=0.511 Sum_probs=97.8
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhhhcccCCCChhhHHHHHHHHHhhheecccc
Q 019050 243 ILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIY 322 (347)
Q Consensus 243 lLelAKlDFn~~Q~~hq~EL~~lsrWwk~l~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~tK~~~litiiDD~y 322 (347)
+|+|||+|||+||++||+|++++.+||+++|+..+.+.+|+|++.++||.+++++.|..+..|+.+||.++++.++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999778888999999999999999999998889999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHhhhc
Q 019050 323 DVYGTLEELKLFTHAIERCVQ 343 (347)
Q Consensus 323 D~yGTleEL~~ft~aV~RWD~ 343 (347)
|..|+.++++.|+++|+|||+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~ 101 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDP 101 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSS
T ss_pred ccccchHHHHHHHHHHhcccc
Confidence 999999999999999999976
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.52 E-value=2.6e-14 Score=133.96 Aligned_cols=88 Identities=63% Similarity=1.116 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhhhcccCCCChhhHHHHHHHHHhhheecccccccCCHHHHHHHHH
Q 019050 257 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 336 (347)
Q Consensus 257 ~hq~EL~~lsrWwk~l~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~tK~~~litiiDD~yD~yGTleEL~~ft~ 336 (347)
.||+|++++++||+++||....+++|.+..++|+|+++++|+|+.+..|+.+||.++++.++||.||.+|+.+|+..|++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 48999999999999999976666999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcc
Q 019050 337 AIERCVQI 344 (347)
Q Consensus 337 aV~RWD~~ 344 (347)
+++||++.
T Consensus 81 ~~~~~~~~ 88 (284)
T cd00868 81 AVERWDIS 88 (284)
T ss_pred HHHhcChh
Confidence 99999854
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=97.61 E-value=0.00014 Score=69.59 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=68.8
Q ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHhhhcccCCCChhhHHHHH-HHHHhhheeccccccc-CCHHHHHHHHHHHHhh
Q 019050 264 EISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMT-KIIAIASVIDDIYDVY-GTLEELKLFTHAIERC 341 (347)
Q Consensus 264 ~lsrWwk~l~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~t-K~~~litiiDD~yD~y-GTleEL~~ft~aV~RW 341 (347)
+...|.++.|+. .-+.+|++.++++|+.++.++.|+.+..|+.++ +.++++.++||+||.. ++++++..+++.+.+|
T Consensus 18 ~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~ 96 (303)
T cd00687 18 EYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDI 96 (303)
T ss_pred HHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhc
Confidence 366798888763 345899999999999999999999999999666 9999999999999998 4999999999888877
Q ss_pred hc
Q 019050 342 VQ 343 (347)
Q Consensus 342 D~ 343 (347)
..
T Consensus 97 ~~ 98 (303)
T cd00687 97 LR 98 (303)
T ss_pred cC
Confidence 54
No 8
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=41.90 E-value=8.4 Score=34.15 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.7
Q ss_pred hheecccccccCCHHHHHHHHH
Q 019050 315 ASVIDDIYDVYGTLEELKLFTH 336 (347)
Q Consensus 315 itiiDD~yD~yGTleEL~~ft~ 336 (347)
+.++||+.|.++|+.++.....
T Consensus 87 VLIVDDIiDTG~Tl~~v~~~l~ 108 (156)
T PRK09177 87 FLVVDDLVDTGGTARAVREMYP 108 (156)
T ss_pred EEEEeeeeCCHHHHHHHHHHHh
Confidence 5688999999999999876653
No 9
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=38.36 E-value=13 Score=30.29 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=15.7
Q ss_pred hheecccccccCCHHHHHHH
Q 019050 315 ASVIDDIYDVYGTLEELKLF 334 (347)
Q Consensus 315 itiiDD~yD~yGTleEL~~f 334 (347)
+.++||++|.++|+.+...+
T Consensus 91 vliVDDvi~tG~Tl~~~~~~ 110 (125)
T PF00156_consen 91 VLIVDDVIDTGGTLKEAIEL 110 (125)
T ss_dssp EEEEEEEESSSHHHHHHHHH
T ss_pred EEEEeeeEcccHHHHHHHHH
Confidence 56789999999998887554
No 10
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.98 E-value=4.4e+02 Score=25.67 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHHh
Q 019050 53 ETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132 (347)
Q Consensus 53 e~Lk~eVr~ml~~~~~~~~d~~~~L~lID~LqRLGI~~hFe~EI~~~L~~iy~~~~~~~~~~~~~~~~DL~~~AL~FRLL 132 (347)
..-|..+++.|.. .++.....+-+--.-|++|---+=.++-..+|..--+
T Consensus 52 ~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~--------------------------- 101 (250)
T COG3063 52 AQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN--------------------------- 101 (250)
T ss_pred HHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---------------------------
Confidence 3456677788876 6788888888888888888655555544444432211
Q ss_pred hhcCcccccccccccccccccccccchhhHHHHHHHhhhhhccCCCch--HHHHHHHHHH---------HHHHHHhhcC-
Q 019050 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGEN--ILEEACEFSR---------KHLKSLLSHL- 200 (347)
Q Consensus 133 RqhGy~VSsDvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~--iLdeA~~Ft~---------~~L~~~~~~~- 200 (347)
+-||+|+| |-|-|+...=..+|--+=+|..--.-||. .++.+..++- .+|+..+.+.
T Consensus 102 -------~GdVLNNY----G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 102 -------NGDVLNNY----GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred -------ccchhhhh----hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 13688888 78887777777888888888866665664 5666665543 5566555432
Q ss_pred --CCchHHHHHHhccCCccCCcchhHHhhhHHhhhcCCccccHHH---HHHHHh
Q 019050 201 --STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELI---LELAKL 249 (347)
Q Consensus 201 --~~~L~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~~n~~l---LelAKl 249 (347)
++.+. .|-.+....=.+..||.|++.|.+.....-++| .++||.
T Consensus 171 ~~~~~~l-----~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~ 219 (250)
T COG3063 171 QFPPALL-----ELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKR 219 (250)
T ss_pred CCChHHH-----HHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 22222 233334555677899999999998765233333 355553
No 11
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=31.66 E-value=25 Score=32.69 Aligned_cols=23 Identities=30% Similarity=0.185 Sum_probs=18.9
Q ss_pred hheecccccccCCHHHHHHHHHH
Q 019050 315 ASVIDDIYDVYGTLEELKLFTHA 337 (347)
Q Consensus 315 itiiDD~yD~yGTleEL~~ft~a 337 (347)
+.++|||.|++.|++....+.+-
T Consensus 90 VLIVDDI~DTG~Tl~~a~~~l~~ 112 (192)
T COG2236 90 VLIVDDIVDTGETLELALEELKK 112 (192)
T ss_pred EEEEecccCchHhHHHHHHHHHh
Confidence 56899999999999987766554
No 12
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=31.47 E-value=15 Score=33.12 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=17.1
Q ss_pred hheecccccccCCHHHHHHH
Q 019050 315 ASVIDDIYDVYGTLEELKLF 334 (347)
Q Consensus 315 itiiDD~yD~yGTleEL~~f 334 (347)
|.+|||||.++.|+.|....
T Consensus 155 vllvDDV~TTGaTl~~~~~~ 174 (190)
T TIGR00201 155 IVLVDDVVTTGATLHEIARL 174 (190)
T ss_pred EEEEeeeeccHHHHHHHHHH
Confidence 66799999999999998543
No 13
>PRK11595 DNA utilization protein GntX; Provisional
Probab=30.83 E-value=16 Score=34.20 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=17.1
Q ss_pred hheecccccccCCHHHHHHH
Q 019050 315 ASVIDDIYDVYGTLEELKLF 334 (347)
Q Consensus 315 itiiDD~yD~yGTleEL~~f 334 (347)
|.+||||+|++.|+.++...
T Consensus 190 vllvDDv~tTG~Tl~~~~~~ 209 (227)
T PRK11595 190 MAIVDDVVTTGSTVAEIAQL 209 (227)
T ss_pred EEEEeeeecchHHHHHHHHH
Confidence 67899999999999998543
No 14
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=27.55 E-value=27 Score=31.28 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=17.1
Q ss_pred hheecccccccCCHHHHHHH
Q 019050 315 ASVIDDIYDVYGTLEELKLF 334 (347)
Q Consensus 315 itiiDD~yD~yGTleEL~~f 334 (347)
+.++||+.|.++|+.++...
T Consensus 98 VLIVDDIidTG~Tl~~~~~~ 117 (176)
T PRK05205 98 VILVDDVLYTGRTIRAALDA 117 (176)
T ss_pred EEEEecccCcHHHHHHHHHH
Confidence 67899999999999987543
No 15
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=27.19 E-value=29 Score=32.65 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=17.9
Q ss_pred hheecccccccCCHHHHHHHH
Q 019050 315 ASVIDDIYDVYGTLEELKLFT 335 (347)
Q Consensus 315 itiiDD~yD~yGTleEL~~ft 335 (347)
|.+|||||.++.|+.|...-.
T Consensus 187 vlLvDDV~TTGaTl~~~~~~L 207 (225)
T COG1040 187 VLLVDDVYTTGATLKEAAKLL 207 (225)
T ss_pred EEEEecccccHHHHHHHHHHH
Confidence 567999999999999986544
No 16
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.05 E-value=31 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=16.9
Q ss_pred HHHHHHHhhhcCcccccccccccc
Q 019050 125 VALRFRLLRQHGYKVSADIFKKFR 148 (347)
Q Consensus 125 ~AL~FRLLRqhGy~VSsDvF~~F~ 148 (347)
+.=.+.-|+++|+++|+++++.+.
T Consensus 21 ~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 21 VKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHH
Confidence 333345558889999998887764
No 17
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=23.86 E-value=1.8e+02 Score=27.32 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCccc-HHHHHHHHHHHHHhCcccc--cHHHHHHHHHHHHhhccCCCCCCCCCCCCch
Q 019050 46 TEVEKRFETLKAEIEKLLVSNNTAWKT-LEEIVAIVNQLQRLGVAYH--FENEIKEALQTIYDSHVNGNCDVNYDHNNDL 122 (347)
Q Consensus 46 ~~~~~~~e~Lk~eVr~ml~~~~~~~~d-~~~~L~lID~LqRLGI~~h--Fe~EI~~~L~~iy~~~~~~~~~~~~~~~~DL 122 (347)
+..+.+.++++.-+|.|..+ ..+ ......++++|+.||=..- .+.+|..+|...-. -+
T Consensus 12 ~~~~~~l~Kl~K~~k~~~~~----g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~---------------~l 72 (215)
T cd07604 12 EGDRVGLQKLKKAVKAIHNS----GLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSV---------------FT 72 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHH---------------HH
Confidence 45677889999999999875 334 5678999999999993221 23357777655321 24
Q ss_pred hHHHHHHHHhhhcCcccccccccccccc
Q 019050 123 YIVALRFRLLRQHGYKVSADIFKKFRDE 150 (347)
Q Consensus 123 ~~~AL~FRLLRqhGy~VSsDvF~~F~d~ 150 (347)
..++=.+-.|++|=-++-...+.+|..+
T Consensus 73 ~El~~~~~~L~~~~~~~i~~pL~~f~k~ 100 (215)
T cd07604 73 KELAALFKNLMQNLNNIIMFPLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566778887777777777788744
No 18
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=23.53 E-value=29 Score=31.31 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHhhhhhccCCCchHHHHHHHHHHHHHHHHhh------cC---CCchHHHHHHhccCCccC
Q 019050 164 GLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS------HL---STPLVDQVEHSLEIPLHR 218 (347)
Q Consensus 164 glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~------~~---~~~L~~~V~~aL~~P~~~ 218 (347)
.|++ ++ ..-+..++|.......+....+.... .+ .-.++..+.++|..|+..
T Consensus 8 ~~~~--~~-~~~~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~ 68 (181)
T PRK09162 8 QVLA--EA-DCLVSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEF 68 (181)
T ss_pred HHHh--hC-cEeecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCccc
Confidence 4555 55 55566677777666666665554211 01 224788888888887543
No 19
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=23.48 E-value=35 Score=30.42 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=18.1
Q ss_pred hhheecccccccCCHHHHHHHH
Q 019050 314 IASVIDDIYDVYGTLEELKLFT 335 (347)
Q Consensus 314 litiiDD~yD~yGTleEL~~ft 335 (347)
=+.++||+.|.++|+.++....
T Consensus 86 ~vlivDDii~TG~Tl~~~~~~l 107 (166)
T TIGR01203 86 DVLIVEDIVDTGLTLQYLLDLL 107 (166)
T ss_pred EEEEEeeeeCcHHHHHHHHHHH
Confidence 3678999999999999986543
No 20
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=23.45 E-value=34 Score=30.30 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.0
Q ss_pred hhheecccccccCCHHHHHHHH
Q 019050 314 IASVIDDIYDVYGTLEELKLFT 335 (347)
Q Consensus 314 litiiDD~yD~yGTleEL~~ft 335 (347)
=+.++||+++.++|+.++....
T Consensus 111 ~VLIVDDIitTG~Tl~~a~~~L 132 (169)
T TIGR01090 111 RVLIVDDLLATGGTAEATDELI 132 (169)
T ss_pred EEEEEeccccchHHHHHHHHHH
Confidence 3567899999999999986554
No 21
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=23.26 E-value=39 Score=30.06 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.1
Q ss_pred hhheecccccccCCHHHHHHHH
Q 019050 314 IASVIDDIYDVYGTLEELKLFT 335 (347)
Q Consensus 314 litiiDD~yD~yGTleEL~~ft 335 (347)
=+.++||+++.++|+.+.....
T Consensus 116 ~VLIVDDivtTG~Tl~~~~~~l 137 (175)
T PRK02304 116 RVLIVDDLLATGGTLEAAIKLL 137 (175)
T ss_pred EEEEEeCCccccHHHHHHHHHH
Confidence 3678999999999998886554
No 22
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=22.24 E-value=39 Score=30.39 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.1
Q ss_pred hhheecccccccCCHHHHHHHH
Q 019050 314 IASVIDDIYDVYGTLEELKLFT 335 (347)
Q Consensus 314 litiiDD~yD~yGTleEL~~ft 335 (347)
=+.+|||+++.++|+.++....
T Consensus 122 ~VLIVDDiitTG~Tl~aa~~~L 143 (178)
T PRK07322 122 RVAIVDDVVSTGGTLTALERLV 143 (178)
T ss_pred EEEEEeccccccHHHHHHHHHH
Confidence 3678999999999998876543
No 23
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.49 E-value=1.2e+02 Score=29.74 Aligned_cols=57 Identities=28% Similarity=0.354 Sum_probs=39.8
Q ss_pred cccccccccchhhHHHHHHHhhhhhccCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHhcc
Q 019050 149 DEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLE 213 (347)
Q Consensus 149 d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~L~~~V~~aL~ 213 (347)
+.+|-|....+-|+||-..|-.+-- .... +-|=.|..||++||.. .+-++++++-|+
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlNd------esTpK~ir~ll~ 320 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLND------ESTPKSIRHLLE 320 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcCC------CCChHHHHHHhc
Confidence 4678888777889999999987732 2222 3577899999999863 234566666553
No 24
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=21.00 E-value=43 Score=30.51 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=18.5
Q ss_pred hhheecccccccCCHHHHHHHH
Q 019050 314 IASVIDDIYDVYGTLEELKLFT 335 (347)
Q Consensus 314 litiiDD~yD~yGTleEL~~ft 335 (347)
=+.+|||+.|.++|+.++....
T Consensus 107 ~VLIVDDIi~TG~Tl~~a~~~l 128 (187)
T TIGR01367 107 KFVAVEDVVTTGGSLLEAIRAI 128 (187)
T ss_pred EEEEEEeeecchHHHHHHHHHH
Confidence 3678999999999999987554
No 25
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.19 E-value=73 Score=30.04 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhhhcccCCCChh
Q 019050 258 HRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYST 303 (347)
Q Consensus 258 hq~EL~~lsrWwk~l~l~~~L~faRdr~ve~yfw~~~~~feP~~s~ 303 (347)
-++|+..|.+||++.|-+ ++-...-++|.+|.=+|-.
T Consensus 7 E~qql~~ik~wwkeNGk~---------li~gviLg~~~lfGW~ywq 43 (207)
T COG2976 7 EQQQLEAIKDWWKENGKA---------LIVGVILGLGGLFGWRYWQ 43 (207)
T ss_pred HHHHHHHHHHHHHHCCch---------hHHHHHHHHHHHHHHHHHH
Confidence 378999999999999952 2334455566666554443
No 26
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=20.06 E-value=46 Score=30.18 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=18.3
Q ss_pred hheecccccccCCHHHHHHHHH
Q 019050 315 ASVIDDIYDVYGTLEELKLFTH 336 (347)
Q Consensus 315 itiiDD~yD~yGTleEL~~ft~ 336 (347)
+.++|||.|.+.|+..+..+..
T Consensus 95 VLlVDDIiDTG~TL~~l~~~l~ 116 (178)
T PRK15423 95 VLIVEDIIDSGNTLSKVREILS 116 (178)
T ss_pred EEEEeeecCchHHHHHHHHHHH
Confidence 5689999999999998877653
Done!