BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019052
         (347 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FDH|A Chain A, Crystal Structure Of A SusdRAGB FAMILY PROTEIN (BT_2033)
           FROM Bacteroides Thetaiotaomicron Vpi-5482 At 1.75 A
           Resolution
          Length = 499

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 50  VRAGFGGYSYLY-EPLWWVG 68
           V+A +G   Y+Y EP+WW G
Sbjct: 477 VKAAYGNGDYVYSEPVWWAG 496


>pdb|2WBR|A Chain A, The Rrm Domain In Gw182 Proteins Contributes To Mirna-
           Mediated Gene Silencing
          Length = 89

 Score = 28.1 bits (61), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 18/23 (78%)

Query: 125 CVVGSTTIVLHAPAEREIESVIE 147
           CV+ +TTI   +P+E E++S+++
Sbjct: 66  CVLANTTIFAESPSENEVQSIMQ 88


>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
          Length = 490

 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 172 IFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTW 225
            ++  P +   H+MV++G   L+  L      A+G    L   G+   +  Q W
Sbjct: 61  FYYRYPSFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGW 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,135,405
Number of Sequences: 62578
Number of extensions: 255770
Number of successful extensions: 482
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 3
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)