Query 019052
Match_columns 347
No_of_seqs 144 out of 725
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 2.8E-63 6E-68 469.3 15.5 325 2-330 2-328 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 3.5E-62 7.6E-67 469.8 23.2 299 13-311 1-299 (300)
3 TIGR03340 phn_DUF6 phosphonate 99.3 3.9E-10 8.4E-15 107.3 23.4 253 21-302 3-281 (281)
4 PRK02971 4-amino-4-deoxy-L-ara 99.2 8E-11 1.7E-15 100.4 8.5 116 19-134 2-122 (129)
5 PRK11453 O-acetylserine/cystei 99.0 2.2E-07 4.7E-12 89.3 26.1 259 22-307 7-290 (299)
6 PF06027 DUF914: Eukaryotic pr 99.0 1.5E-07 3.2E-12 92.3 25.1 233 59-311 74-312 (334)
7 PRK15430 putative chlorampheni 99.0 8.6E-08 1.9E-12 92.0 21.9 233 15-279 4-266 (296)
8 PLN00411 nodulin MtN21 family 99.0 1.1E-07 2.3E-12 94.3 21.0 220 75-309 91-333 (358)
9 PRK11689 aromatic amino acid e 99.0 5.9E-07 1.3E-11 86.2 25.6 262 21-305 6-288 (295)
10 TIGR00950 2A78 Carboxylate/Ami 98.9 2.2E-07 4.7E-12 86.5 21.5 203 66-299 51-259 (260)
11 PRK15051 4-amino-4-deoxy-L-ara 98.9 7.1E-09 1.5E-13 86.1 9.1 103 22-133 4-108 (111)
12 PRK11272 putative DMT superfam 98.9 2.3E-07 5E-12 88.8 20.2 211 67-307 74-288 (292)
13 TIGR00776 RhaT RhaT L-rhamnose 98.9 2E-07 4.4E-12 89.5 18.9 223 62-305 56-289 (290)
14 PF10639 UPF0546: Uncharacteri 98.7 1.9E-08 4.2E-13 83.7 6.1 105 28-132 5-112 (113)
15 COG2510 Predicted membrane pro 98.7 9.8E-08 2.1E-12 80.6 10.4 109 21-133 5-138 (140)
16 COG0697 RhaT Permeases of the 98.7 4.9E-06 1.1E-10 77.5 22.7 212 66-305 74-288 (292)
17 PRK10532 threonine and homoser 98.7 1.2E-05 2.6E-10 77.1 24.7 255 16-306 9-283 (293)
18 TIGR00817 tpt Tpt phosphate/ph 98.7 1.9E-06 4.2E-11 82.6 18.4 220 66-309 70-298 (302)
19 PF08449 UAA: UAA transporter 98.5 0.00014 2.9E-09 70.2 25.5 228 64-308 67-301 (303)
20 PF13536 EmrE: Multidrug resis 98.4 7.2E-07 1.6E-11 73.7 7.6 67 68-135 41-107 (113)
21 PTZ00343 triose or hexose phos 98.4 3.7E-05 7.9E-10 75.9 20.7 59 75-133 127-185 (350)
22 PF06800 Sugar_transport: Suga 98.3 4.1E-05 8.8E-10 73.0 18.1 214 63-301 43-268 (269)
23 PRK10452 multidrug efflux syst 98.2 1.3E-05 2.7E-10 67.7 10.1 98 25-137 8-106 (120)
24 TIGR00688 rarD rarD protein. T 98.2 0.0001 2.2E-09 69.0 16.4 62 72-133 80-141 (256)
25 PRK09541 emrE multidrug efflux 98.1 2.9E-05 6.2E-10 64.5 10.0 96 25-136 8-105 (110)
26 PRK10532 threonine and homoser 98.0 1.9E-05 4E-10 75.8 8.6 124 18-141 147-288 (293)
27 PF04142 Nuc_sug_transp: Nucle 98.0 0.00024 5.3E-09 66.9 15.8 70 69-138 24-93 (244)
28 KOG4510 Permease of the drug/m 98.0 2.2E-05 4.7E-10 74.3 7.6 282 2-309 17-330 (346)
29 PRK13499 rhamnose-proton sympo 97.9 0.00043 9.4E-09 68.3 16.7 289 14-306 2-343 (345)
30 PF00893 Multi_Drug_Res: Small 97.9 0.0001 2.2E-09 59.2 8.7 85 25-125 7-93 (93)
31 PRK10650 multidrug efflux syst 97.8 0.00025 5.4E-09 58.9 10.5 98 19-132 7-106 (109)
32 TIGR00950 2A78 Carboxylate/Ami 97.8 0.0002 4.3E-09 66.5 10.7 113 17-129 126-259 (260)
33 PLN00411 nodulin MtN21 family 97.7 0.00013 2.8E-09 72.4 9.1 124 15-139 185-333 (358)
34 PRK11689 aromatic amino acid e 97.6 0.00032 7E-09 67.3 9.5 114 18-132 155-285 (295)
35 TIGR03340 phn_DUF6 phosphonate 97.6 0.00016 3.5E-09 68.7 7.3 113 19-131 144-280 (281)
36 PF00892 EamA: EamA-like trans 97.6 5.8E-05 1.3E-09 61.4 3.6 68 65-132 57-124 (126)
37 PRK11272 putative DMT superfam 97.6 0.00042 9.1E-09 66.3 9.8 116 17-132 148-283 (292)
38 PRK11431 multidrug efflux syst 97.6 0.00077 1.7E-08 55.6 9.8 91 26-132 8-100 (105)
39 PRK15051 4-amino-4-deoxy-L-ara 97.5 0.0034 7.3E-08 52.1 12.5 80 219-305 31-110 (111)
40 COG2510 Predicted membrane pro 97.4 0.0014 3.1E-08 55.7 9.8 64 233-305 77-140 (140)
41 PRK11453 O-acetylserine/cystei 97.4 0.0013 2.8E-08 63.1 10.8 115 17-132 141-285 (299)
42 COG2076 EmrE Membrane transpor 97.4 0.0013 2.8E-08 54.2 9.1 92 25-132 8-101 (106)
43 KOG2234 Predicted UDP-galactos 97.2 0.026 5.7E-07 55.5 17.7 69 65-133 95-163 (345)
44 PRK09541 emrE multidrug efflux 97.1 0.017 3.7E-07 47.9 12.9 80 218-306 26-105 (110)
45 COG0697 RhaT Permeases of the 96.9 0.0042 9.1E-08 57.7 8.9 116 17-133 152-286 (292)
46 KOG2765 Predicted membrane pro 96.9 0.12 2.6E-06 51.4 19.0 66 75-140 172-237 (416)
47 PRK02971 4-amino-4-deoxy-L-ara 96.9 0.013 2.8E-07 50.0 10.8 75 228-308 51-126 (129)
48 COG2962 RarD Predicted permeas 96.9 0.23 4.9E-06 47.9 19.9 115 18-132 6-142 (293)
49 PRK11431 multidrug efflux syst 96.7 0.038 8.2E-07 45.6 12.0 78 218-304 25-102 (105)
50 PRK10452 multidrug efflux syst 96.6 0.069 1.5E-06 45.1 12.5 70 232-307 37-106 (120)
51 PRK10650 multidrug efflux syst 96.5 0.068 1.5E-06 44.4 11.9 77 218-303 31-107 (109)
52 PF06027 DUF914: Eukaryotic pr 96.4 0.039 8.4E-07 54.4 11.5 126 12-141 161-312 (334)
53 KOG3912 Predicted integral mem 96.1 0.17 3.7E-06 48.7 13.9 121 16-136 38-160 (372)
54 PRK15430 putative chlorampheni 96.1 0.011 2.4E-07 56.7 6.1 62 73-134 224-285 (296)
55 COG5006 rhtA Threonine/homoser 96.1 0.058 1.3E-06 51.1 10.3 124 15-138 144-286 (292)
56 PF13536 EmrE: Multidrug resis 95.9 0.17 3.7E-06 41.4 11.4 66 237-310 47-112 (113)
57 COG2076 EmrE Membrane transpor 95.8 0.066 1.4E-06 44.2 8.3 78 219-305 27-104 (106)
58 TIGR00817 tpt Tpt phosphate/ph 95.7 0.019 4.1E-07 55.0 6.0 118 15-132 141-291 (302)
59 PF03151 TPT: Triose-phosphate 95.3 0.1 2.3E-06 44.3 8.5 112 20-131 1-150 (153)
60 TIGR00776 RhaT RhaT L-rhamnose 95.2 0.031 6.8E-07 53.7 5.5 114 17-133 150-287 (290)
61 PF00893 Multi_Drug_Res: Small 95.0 0.22 4.8E-06 39.8 8.8 65 218-287 25-89 (93)
62 PF00892 EamA: EamA-like trans 94.9 0.087 1.9E-06 42.4 6.4 66 231-303 60-125 (126)
63 COG5006 rhtA Threonine/homoser 94.8 3.8 8.3E-05 39.1 18.3 201 77-308 86-289 (292)
64 KOG4314 Predicted carbohydrate 94.1 1 2.2E-05 41.5 11.8 62 75-136 66-127 (290)
65 PF06800 Sugar_transport: Suga 94.0 0.39 8.5E-06 46.0 9.5 66 244-311 64-129 (269)
66 KOG1583 UDP-N-acetylglucosamin 94.0 0.47 1E-05 45.7 9.8 79 63-141 65-144 (330)
67 KOG1441 Glucose-6-phosphate/ph 93.8 0.68 1.5E-05 45.4 11.0 62 73-134 94-155 (316)
68 TIGR00803 nst UDP-galactose tr 93.4 0.51 1.1E-05 43.1 9.0 117 15-131 81-221 (222)
69 PTZ00343 triose or hexose phos 92.6 0.78 1.7E-05 45.3 9.6 51 81-131 295-345 (350)
70 COG1742 Uncharacterized conser 91.7 1 2.3E-05 36.9 7.5 49 90-139 60-108 (109)
71 PRK02237 hypothetical protein; 91.4 0.77 1.7E-05 38.0 6.6 48 90-138 61-108 (109)
72 KOG4831 Unnamed protein [Funct 91.3 0.29 6.3E-06 40.4 4.0 104 29-133 13-124 (125)
73 PF08449 UAA: UAA transporter 91.2 1.3 2.9E-05 42.5 9.3 117 15-131 150-294 (303)
74 COG4975 GlcU Putative glucose 91.0 0.19 4.1E-06 47.5 3.0 219 62-306 56-287 (288)
75 KOG1580 UDP-galactose transpor 90.5 16 0.00035 34.7 16.9 211 70-303 93-312 (337)
76 KOG2765 Predicted membrane pro 88.7 1.3 2.9E-05 44.2 7.0 131 7-137 233-393 (416)
77 PF10639 UPF0546: Uncharacteri 88.3 2.2 4.8E-05 35.7 7.1 73 219-301 39-111 (113)
78 PF04142 Nuc_sug_transp: Nucle 84.7 11 0.00023 35.6 10.6 112 13-124 108-243 (244)
79 PF02694 UPF0060: Uncharacteri 82.8 1.5 3.2E-05 36.2 3.4 47 91-138 60-106 (107)
80 PF05653 Mg_trans_NIPA: Magnes 81.2 11 0.00024 36.6 9.4 60 244-310 69-128 (300)
81 PRK13499 rhamnose-proton sympo 78.5 11 0.00023 37.6 8.5 61 244-304 92-153 (345)
82 PF15048 OSTbeta: Organic solu 73.1 5.1 0.00011 33.9 3.9 53 268-320 20-72 (125)
83 KOG2766 Predicted membrane pro 71.0 2 4.2E-05 41.2 1.1 62 79-140 95-156 (336)
84 COG3169 Uncharacterized protei 69.8 4.2 9.2E-05 33.2 2.6 107 13-132 4-113 (116)
85 COG2271 UhpC Sugar phosphate p 69.3 1.1E+02 0.0025 31.5 13.2 56 282-338 183-238 (448)
86 COG4975 GlcU Putative glucose 67.7 4.9 0.00011 38.3 2.9 62 244-307 78-139 (288)
87 PF04342 DUF486: Protein of un 67.6 4.9 0.00011 33.2 2.6 37 96-132 70-106 (108)
88 TIGR00803 nst UDP-galactose tr 67.0 98 0.0021 27.9 14.7 56 238-300 165-220 (222)
89 PF07857 DUF1632: CEO family ( 66.9 20 0.00044 34.1 7.0 49 261-310 87-140 (254)
90 PF04657 DUF606: Protein of un 64.0 47 0.001 28.4 8.2 37 95-131 98-138 (138)
91 PF01306 LacY_symp: LacY proto 62.5 1.3E+02 0.0028 30.7 12.3 76 91-166 143-231 (412)
92 COG2962 RarD Predicted permeas 61.9 71 0.0015 31.1 9.7 71 218-291 65-135 (293)
93 KOG1443 Predicted integral mem 60.2 1.8E+02 0.004 28.7 14.8 59 77-135 99-157 (349)
94 TIGR00688 rarD rarD protein. T 58.9 53 0.0011 30.3 8.3 56 240-302 85-140 (256)
95 KOG1583 UDP-N-acetylglucosamin 58.4 17 0.00037 35.3 4.8 33 100-132 280-312 (330)
96 COG4858 Uncharacterized membra 58.1 79 0.0017 29.0 8.7 58 61-118 157-220 (226)
97 KOG1581 UDP-galactose transpor 56.9 2.1E+02 0.0045 28.3 18.2 67 73-139 94-160 (327)
98 PF06379 RhaT: L-rhamnose-prot 56.5 57 0.0012 32.5 8.2 79 225-304 259-340 (344)
99 PRK03893 putative sialic acid 56.3 2.2E+02 0.0047 28.4 13.0 16 327-342 480-495 (496)
100 KOG1442 GDP-fucose transporter 46.4 4.6 9.9E-05 39.1 -1.1 59 72-130 112-170 (347)
101 PF08507 COPI_assoc: COPI asso 43.6 39 0.00086 28.6 4.4 16 286-301 87-102 (136)
102 KOG4510 Permease of the drug/m 40.8 63 0.0014 31.4 5.6 77 233-319 108-184 (346)
103 PF03601 Cons_hypoth698: Conse 40.5 3.6E+02 0.0078 26.3 14.6 27 252-278 240-266 (305)
104 TIGR00881 2A0104 phosphoglycer 39.5 3.2E+02 0.0068 25.4 10.4 18 174-191 52-69 (379)
105 PF14851 FAM176: FAM176 family 38.6 96 0.0021 27.3 6.0 7 264-270 27-33 (153)
106 KOG2922 Uncharacterized conser 38.5 23 0.0005 34.9 2.4 84 217-312 60-144 (335)
107 KOG1580 UDP-galactose transpor 38.4 24 0.00053 33.5 2.4 41 97-137 276-316 (337)
108 PF06570 DUF1129: Protein of u 37.4 2.3E+02 0.0049 25.7 8.7 56 62-117 143-204 (206)
109 PF11970 Git3_C: G protein-cou 36.3 69 0.0015 24.7 4.3 48 252-299 14-61 (76)
110 PF04531 Phage_holin_1: Bacter 33.5 1.8E+02 0.004 22.7 6.4 24 57-80 5-28 (84)
111 KOG2234 Predicted UDP-galactos 33.1 2.7E+02 0.0058 27.9 8.8 121 12-133 176-321 (345)
112 PF11368 DUF3169: Protein of u 31.3 1.5E+02 0.0032 27.7 6.6 16 185-200 12-27 (248)
113 PF03151 TPT: Triose-phosphate 31.1 3E+02 0.0066 22.7 14.8 73 222-301 78-150 (153)
114 PF11022 DUF2611: Protein of u 30.8 32 0.00068 26.4 1.5 24 296-319 26-51 (71)
115 PF00909 Ammonium_transp: Ammo 29.2 4.4E+02 0.0096 26.4 10.0 36 241-276 294-329 (399)
116 KOG1441 Glucose-6-phosphate/ph 28.0 41 0.00089 33.1 2.2 33 14-46 158-190 (316)
117 TIGR02106 cyd_oper_ybgT cyd op 26.8 92 0.002 19.9 2.9 22 15-36 4-25 (30)
118 PF08173 YbgT_YccB: Membrane b 26.2 98 0.0021 19.5 2.9 21 15-35 4-24 (28)
119 PF06966 DUF1295: Protein of u 25.3 3.2E+02 0.007 25.3 7.7 64 12-76 116-186 (235)
120 COG1113 AnsP Gamma-aminobutyra 24.7 6.6E+02 0.014 26.2 10.2 85 218-310 96-183 (462)
121 COG3238 Uncharacterized protei 24.4 87 0.0019 27.5 3.4 38 95-132 103-144 (150)
122 PF05977 MFS_3: Transmembrane 24.4 8.3E+02 0.018 25.5 15.1 34 284-317 373-406 (524)
123 PRK11469 hypothetical protein; 24.3 5.3E+02 0.011 23.2 8.7 15 118-132 167-182 (188)
124 PRK14749 hypothetical protein; 23.6 1.6E+02 0.0034 18.8 3.4 22 15-36 4-25 (30)
125 PF12263 DUF3611: Protein of u 23.2 5.4E+02 0.012 23.3 8.3 43 66-108 112-168 (183)
126 PF11297 DUF3098: Protein of u 22.1 1.7E+02 0.0036 22.4 4.1 30 280-309 3-32 (69)
127 PF02208 Sorb: Sorbin homologo 22.0 67 0.0015 22.5 1.7 22 324-345 5-26 (47)
128 PLN00028 nitrate transmembrane 21.3 1.6E+02 0.0035 29.8 5.2 50 254-305 384-433 (476)
129 PF11377 DUF3180: Protein of u 20.9 3.3E+02 0.0072 23.3 6.2 28 14-41 28-55 (138)
130 PF03209 PUCC: PUCC protein; 20.7 9.1E+02 0.02 24.6 13.8 79 235-313 104-185 (403)
131 PF06157 DUF973: Protein of un 20.6 7.8E+02 0.017 23.8 10.1 61 17-80 45-105 (285)
132 PRK10666 ammonium transporter; 20.1 9.6E+02 0.021 24.6 14.2 35 239-273 321-355 (428)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.8e-63 Score=469.25 Aligned_cols=325 Identities=68% Similarity=1.115 Sum_probs=305.9
Q ss_pred CCCCCCcccc--CCchhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHHHHHHHHHHHH
Q 019052 2 ADPNGHSWRD--GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIAN 79 (347)
Q Consensus 2 ~~~~~~~~~~--~~~s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~ 79 (347)
+.-||+.|++ .|.+++.+|+++|+.|+++++.++++|||++.|.+..+.|++....+|++.|+||+|++.|++|+++|
T Consensus 2 ~~~sg~~~~~~~~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~N 81 (335)
T KOG2922|consen 2 ASSSGSWRDEMKRMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIAN 81 (335)
T ss_pred CCCCcchHHHHhhhccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhh
Confidence 4556665543 58999999999999999999999999999999987767777777889999999999999999999999
Q ss_pred HHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCHHHHHHHhcchhHHH
Q 019052 80 FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLL 159 (347)
Q Consensus 80 ~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~~el~~~~~~~~fl~ 159 (347)
++||+|||+++|+|||++++++++++++++||||++..+.+|+++|++|.++++.++|++++..|++|+++++++|+|++
T Consensus 82 FaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fli 161 (335)
T KOG2922|consen 82 FAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLV 161 (335)
T ss_pred HHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHH
Q 019052 160 YAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQM 239 (347)
Q Consensus 160 y~~~~~~~~~~l~~~~~~r~g~~~~l~y~~~~gllgg~t~l~~K~v~~~l~~~~~g~~~~~~~~~y~ll~~~v~~~l~Q~ 239 (347)
|+.+.+++.+++++++.||+|+++++.|..+|+++|++|++++|+++++++++++|.+|+.+|.+|.++.+++.|+..|+
T Consensus 162 y~~~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~ 241 (335)
T KOG2922|consen 162 YVIIIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQM 241 (335)
T ss_pred HHHHHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHH
Confidence 99999988888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCcc
Q 019052 240 NYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKDLGDGSSLTPSMS 319 (347)
Q Consensus 240 ~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~~~~~~~~~~~~~ 319 (347)
.|+||||+.||+++|.|++|++||..++++|.|+|+||++.+..+..++++|+..++.|+++|.+.+|.+..-.-.++|+
T Consensus 242 ~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~~~s~~~~~ 321 (335)
T KOG2922|consen 242 NYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEISLASYNSMS 321 (335)
T ss_pred HHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876665556665
Q ss_pred ccccCCCCCCC
Q 019052 320 LRLSKHADDDD 330 (347)
Q Consensus 320 ~~~~~~~~~~~ 330 (347)
+.+|+.|
T Consensus 322 ----~~~~~~~ 328 (335)
T KOG2922|consen 322 ----KIIETSP 328 (335)
T ss_pred ----cccccCc
Confidence 5555554
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=3.5e-62 Score=469.82 Aligned_cols=299 Identities=46% Similarity=0.818 Sum_probs=283.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhh
Q 019052 13 MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVT 92 (347)
Q Consensus 13 ~~s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~aL~~ap~slv~ 92 (347)
|.+++++|+.+|++||+++++|.++|||++.|+++++.|.+...++|+|||+||.|+.++++|++++++||+++|+++||
T Consensus 1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~ 80 (300)
T PF05653_consen 1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVA 80 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHH
Confidence 45789999999999999999999999999999887655544456799999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 019052 93 PLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILI 172 (347)
Q Consensus 93 Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~l~ 172 (347)
|++++++++|++++++++|||++++|++|++++++|+++++.++|++++.++.+|+.+++++|.|+.|+.+..++.+.++
T Consensus 81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~ 160 (300)
T PF05653_consen 81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILI 160 (300)
T ss_pred HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877777777
Q ss_pred HhhccccCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 019052 173 FHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTA 252 (347)
Q Consensus 173 ~~~~~r~g~~~~l~y~~~~gllgg~t~l~~K~v~~~l~~~~~g~~~~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~ 252 (347)
+...+|+|+++.+.|..+|+++|+++++++|++++.++++++|++||.+|.+|.++++++.+++.|++|+|+||++||++
T Consensus 161 ~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~ 240 (300)
T PF05653_consen 161 FFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTS 240 (300)
T ss_pred HhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 77788889999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 019052 253 VVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKDLGDG 311 (347)
Q Consensus 253 ~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~~~~~ 311 (347)
.++|++||+||.+++++|+++|||+.+++++++.++.+|+++++.||++|++++|.+..
T Consensus 241 ~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~~ 299 (300)
T PF05653_consen 241 LVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEIS 299 (300)
T ss_pred EEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhcc
Confidence 99999999999999999999999999999999999999999999999999999987653
No 3
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.34 E-value=3.9e-10 Score=107.31 Aligned_cols=253 Identities=18% Similarity=0.175 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhccCCc--cc-C-------------CcccccccchhH---HHHHHHHHHHHHHHHH
Q 019052 21 LILALSSSIFIGSSFIVKKKGLKKAGASGV--RA-G-------------FGGYSYLYEPLW---WVGMITMVVGEIANFA 81 (347)
Q Consensus 21 v~lal~sa~~~a~G~~lqk~~~~~~~~~~~--~~-~-------------~~~~~~l~~p~W---~~G~~l~~~g~~~~~~ 81 (347)
.++.+.++++.|..+.+.|+...++..-.. .. . ...++..++..| ..+.........+...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ 82 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999976554321000 00 0 000111111122 1223334566678888
Q ss_pred HHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCHHHHHHHhcchhHHHHH
Q 019052 82 AYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYA 161 (347)
Q Consensus 82 aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~~el~~~~~~~~fl~y~ 161 (347)
++...|.+.++|+...+.+++.+++.+++|||+++++|.|+.++..|+.++.. ++.+. .+. ... .+.
T Consensus 83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~--~~~~~-~~~---------~g~-~~~ 149 (281)
T TIGR03340 83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL--SRFAQ-HRR---------KAY-AWA 149 (281)
T ss_pred HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--ccccc-cch---------hHH-HHH
Confidence 99999999999999999999999999999999999999999999999987643 22111 110 111 111
Q ss_pred HHHHHHHHHHHHhh-ccccCcc-h----hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCcccc-hhHHHHHHHHHHHH
Q 019052 162 ALVITAVFILIFHY-IPQYGQT-H----IMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLI-YPQTWAFTLIVIVC 234 (347)
Q Consensus 162 ~~~~~~~~~l~~~~-~~r~g~~-~----~l~y~~~~gllgg~t~l~~K~v~~~l~~~~~g~~~~~-~~~~y~ll~~~v~~ 234 (347)
.. ...+...+.. .|+..++ + ...+...+.+.++....... . ..++..... .+..+.++.....+
T Consensus 150 l~--aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~ 220 (281)
T TIGR03340 150 LA--AALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLY-----L--KRHGRSMFPYARQILPSATLGGLM 220 (281)
T ss_pred HH--HHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHH-----H--HHhccchhhhHHHHHHHHHHHHHH
Confidence 11 1111112222 2322111 1 11121222222211111000 0 001111111 22222233333344
Q ss_pred HHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhh
Q 019052 235 VLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLL 302 (347)
Q Consensus 235 ~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlL 302 (347)
......+.++++++.+++.+.+..|. .++++++.|.++++|..+ .....|..+++.|++++
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l-~pv~a~l~g~~~lgE~~~------~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNT-SIVFAVVLGIWFLNERWY------LTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeeccc-HHHHHHHHHHHHhCCCcc------HHHHHHHHHHHHhHHhC
Confidence 44445567899999999999998877 489999999999999764 34567888888898875
No 4
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.18 E-value=8e-11 Score=100.39 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhccCCcccCC-cccccccch--hHHHHHHHHHHHHHHHHHHHhhcchhhhhcch
Q 019052 19 KGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGF-GGYSYLYEP--LWWVGMITMVVGEIANFAAYAFAPAILVTPLG 95 (347)
Q Consensus 19 iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~~~-~~~~~l~~p--~W~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~ 95 (347)
+|.++.+.+.++.+.||.+.|+++.+.++.+..... .......+| .-+.|+.++++++.++..+++..|+++..|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~ 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 467888999999999999999999886543211100 011235567 78899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH--HhccccccchhhHHHHHhhcceeEEe
Q 019052 96 ALSIIISAALAHI--ILRERLHIFGILGCILCVVGSTTIVL 134 (347)
Q Consensus 96 ~~~lv~~~~la~~--~l~E~~~~~~~~G~~li~~G~~liv~ 134 (347)
+..+++..+.+.. ++||+++.++++|+++|++|++++..
T Consensus 82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999888888886 79999999999999999999998743
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.03 E-value=2.2e-07 Score=89.31 Aligned_cols=259 Identities=17% Similarity=0.227 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhccC---CcccC---Ccccccc---cch-hHHH--HHHHHHHHHHHHHHHHhh-cch
Q 019052 22 ILALSSSIFIGSSFIVKKKGLKKAGAS---GVRAG---FGGYSYL---YEP-LWWV--GMITMVVGEIANFAAYAF-APA 88 (347)
Q Consensus 22 ~lal~sa~~~a~G~~lqk~~~~~~~~~---~~~~~---~~~~~~l---~~p-~W~~--G~~l~~~g~~~~~~aL~~-ap~ 88 (347)
.++++++++.+......|.+..+.+.. ..|-. .....+. |++ ..+. |+........+.+.++.. .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 456777888888888888766432211 01100 0000000 111 1122 222222333455666766 477
Q ss_pred hhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCHHHHHHHhcchhHHHHHHHHHHHH
Q 019052 89 ILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAV 168 (347)
Q Consensus 89 slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~ 168 (347)
+...-+..+..+++.+++++++|||+++++++|.++..+|+.++... ..++...+. ... .+. +... +
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~-~~~~~~~~~---------~G~-~l~-l~aa-l 153 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED-SLNGQHVAM---------LGF-MLT-LAAA-F 153 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc-cCCCcchhH---------HHH-HHH-HHHH-H
Confidence 88888888999999999999999999999999999999999877532 111111100 011 111 1111 1
Q ss_pred HHHHH-hhccccCcc----hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc------ccchhHHHH-HHHHHHHHHH
Q 019052 169 FILIF-HYIPQYGQT----HIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMN------QLIYPQTWA-FTLIVIVCVL 236 (347)
Q Consensus 169 ~~l~~-~~~~r~g~~----~~l~y~~~~gllgg~t~l~~K~v~~~l~~~~~g~~------~~~~~~~y~-ll~~~v~~~l 236 (347)
+...+ ...++..++ ....+.....+++...... .+. . .++.+ ...++..|. ++...+.+..
T Consensus 154 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~---~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~ 226 (299)
T PRK11453 154 SWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFV---ASL-I---LDGSATMIHSLVTIDMTTILSLMYLAFVATI 226 (299)
T ss_pred HHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHH---HHH-H---hcCchhhhhhhccCCHHHHHHHHHHHHHHHH
Confidence 11111 112221111 1122222222222211110 000 0 11111 112233333 3344456667
Q ss_pred HHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCC
Q 019052 237 TQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKD 307 (347)
Q Consensus 237 ~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~ 307 (347)
.+....++++++.++..+.++ ....|+++++.|.+++||... .....|.+++++|+++....+.
T Consensus 227 ~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~~~------~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 227 VGYGIWGTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERLT------GLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCCcc------HHHHHHHHHHHHHHHHHhcchh
Confidence 777788999999998877765 457799999999999999754 3446788888899988765443
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.03 E-value=1.5e-07 Score=92.31 Aligned_cols=233 Identities=16% Similarity=0.242 Sum_probs=133.2
Q ss_pred cccchhHHHHH--HHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeec
Q 019052 59 YLYEPLWWVGM--ITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (347)
Q Consensus 59 ~l~~p~W~~G~--~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~ 136 (347)
.+++++|.-=+ ++.+.++.+...|+.+.+++-+|=+.+.+++|+++++.++||||.+..+++|++++++|+++++...
T Consensus 74 ~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 74 VLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 35555554333 2356888999999999999999999999999999999999999999999999999999999887664
Q ss_pred CCCCccc-CHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh-ccc-cCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 019052 137 PAEREIE-SVIEVWNLATEPAFLLYAALVITAVFILIFHY-IPQ-YGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTL 213 (347)
Q Consensus 137 ~~~~~~~-t~~el~~~~~~~~fl~y~~~~~~~~~~l~~~~-~~r-~g~~~~l~y~~~~gllgg~t~l~~K~v~~~l~~~~ 213 (347)
...++.. +. +++..--.+. +...++-....+ .++ -++.....+.+--|++|.+-.. ..... +. .
T Consensus 154 ~~~~~~~~~~-------~~~i~GDll~-l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~-iq~~i--le--~ 220 (334)
T PF06027_consen 154 VLSGSDSSSG-------SNPILGDLLA-LLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISG-IQLAI--LE--R 220 (334)
T ss_pred ccccccCCCC-------CccchhHHHH-HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH-HHHHh--ee--h
Confidence 3222111 00 0111100011 111111111111 111 1222223344444444433211 11111 00 1
Q ss_pred cCCcccc-hhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Q 019052 214 SGMNQLI-YPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGF 292 (347)
Q Consensus 214 ~g~~~~~-~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~ 292 (347)
++...+. ++....+++....+...=-...+-.++..+|+.+ .+---.-+..+++.|+.+||+..+ ....+|.
T Consensus 221 ~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~-nLsLLTsd~~ali~~i~~f~~~~~------~ly~~af 293 (334)
T PF06027_consen 221 SGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFF-NLSLLTSDFYALIIDIFFFGYKFS------WLYILAF 293 (334)
T ss_pred hhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccee-ehHHHHhhHHHHHHHHHhcCcccc------HHHHHHH
Confidence 1211121 3333333333333322212233556777777633 333344567789999999999643 3577888
Q ss_pred HHHHHHHhhhccCCCCCCC
Q 019052 293 VTILAGTFLLHKTKDLGDG 311 (347)
Q Consensus 293 ~l~i~GVvlLs~~~~~~~~ 311 (347)
++++.|+++....+++.++
T Consensus 294 ~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 294 ALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHhheEEccCCcccc
Confidence 9999999999876654433
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.00 E-value=8.6e-08 Score=92.01 Aligned_cols=233 Identities=15% Similarity=0.085 Sum_probs=134.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC---Cccc--C--------------CcccccccchhH----HHHHHH
Q 019052 15 SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS---GVRA--G--------------FGGYSYLYEPLW----WVGMIT 71 (347)
Q Consensus 15 s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~---~~~~--~--------------~~~~~~l~~p~W----~~G~~l 71 (347)
.+...|+.++++++++.+.....-|.. .+.+.. -.|. + ...++..+++++ ..|...
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL 82 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 355678899999999888888888753 221100 0000 0 000001112322 245556
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCHHHHHHH
Q 019052 72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNL 151 (347)
Q Consensus 72 ~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~~el~~~ 151 (347)
..++..+.+.++...|.+...-+..+..++..+++.+++|||+++++|.|+++..+|++++.. +. ++.
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~--~~-~~~--------- 150 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW--TF-GSL--------- 150 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH--Hc-CCc---------
Confidence 677889999999999999999999999999999999999999999999999999999987642 21 110
Q ss_pred hcchhHHHHHHHHHHHHHHHHHh-hccccCcch-h-HHHHH-HHHHhhHHHHHHHHHHHHHHHHHhcCCccc-c-hhHHH
Q 019052 152 ATEPAFLLYAALVITAVFILIFH-YIPQYGQTH-I-MVYIG-VCSLVGSLSVMSVKAIGIALKLTLSGMNQL-I-YPQTW 225 (347)
Q Consensus 152 ~~~~~fl~y~~~~~~~~~~l~~~-~~~r~g~~~-~-l~y~~-~~gllgg~t~l~~K~v~~~l~~~~~g~~~~-~-~~~~y 225 (347)
+ .+ .+. ...+...+. ..+|...+. . ..... ....++.... +.....+.... . .+..+
T Consensus 151 ---~---~~-~l~-aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 213 (296)
T PRK15430 151 ---P---II-ALG-LAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYL---------FAIADSSTSHMGQNPMSLN 213 (296)
T ss_pred ---c---HH-HHH-HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH---------HHHccCCcccccCCcHHHH
Confidence 0 01 111 111111121 223322111 1 01110 0001111100 00000111111 1 12222
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCC
Q 019052 226 AFTLI-VIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDR 279 (347)
Q Consensus 226 ~ll~~-~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~ 279 (347)
.++.. .+.+.+.| .+.|+++++.+++.+.+..|. .++++++.|..++||..+
T Consensus 214 ~~~~~~g~~t~i~~-~~~~~a~~~~~a~~~s~~~~l-~Pv~a~~~g~l~l~E~~~ 266 (296)
T PRK15430 214 LLLIAAGIVTTVPL-LCFTAAATRLRLSTLGFFQYI-GPTLMFLLAVTFYGEKPG 266 (296)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHcCCCC
Confidence 22222 33445544 478999999999977777665 699999999999999754
No 8
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.95 E-value=1.1e-07 Score=94.27 Aligned_cols=220 Identities=12% Similarity=0.162 Sum_probs=119.8
Q ss_pred HHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHH------hccccccchhhHHHHHhhcceeEEeecCCC------Ccc
Q 019052 75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHII------LRERLHIFGILGCILCVVGSTTIVLHAPAE------REI 142 (347)
Q Consensus 75 g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~------l~E~~~~~~~~G~~li~~G~~liv~~~~~~------~~~ 142 (347)
.+.+...++.+.|.+...-+..+..+|++++++++ +|||+++++++|+++..+|+.++....... ++.
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 33467889999999999999999999999999999 699999999999999999998764322110 000
Q ss_pred cCHHHHH--HHhcchhHHHHHHHH-HHHHHHHHH-hhccccCcc--hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC-
Q 019052 143 ESVIEVW--NLATEPAFLLYAALV-ITAVFILIF-HYIPQYGQT--HIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSG- 215 (347)
Q Consensus 143 ~t~~el~--~~~~~~~fl~y~~~~-~~~~~~l~~-~~~~r~g~~--~~l~y~~~~gllgg~t~l~~K~v~~~l~~~~~g- 215 (347)
.+..+.. ..........-..+. ...++...+ ...+|..++ ....+.....+.++...... + .+ .++
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~-l~---~~~~ 243 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMI---G-LV---VEKN 243 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHH---H-HH---HccC
Confidence 0000000 000001111000111 111111111 112221111 11122222222222221110 0 01 111
Q ss_pred -Ccc-cchh--HHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 019052 216 -MNQ-LIYP--QTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCG 291 (347)
Q Consensus 216 -~~~-~~~~--~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG 291 (347)
... ..+| ..+.++...+.+.+ -..+.|+++++-+++.+... .-..|+++++.|.++++|... ...++|
T Consensus 244 ~~~~~~~~~~~~~~~i~y~~i~t~l-ay~lw~~~v~~~ga~~as~~-~~L~PV~a~llg~l~LgE~lt------~~~~iG 315 (358)
T PLN00411 244 NPSVWIIHFDITLITIVTMAIITSV-YYVIHSWTVRHKGPLYLAIF-KPLSILIAVVMGAIFLNDSLY------LGCLIG 315 (358)
T ss_pred CcccceeccchHHHHHHHHHHHHHH-HHHHHHHHHhccCchHHHHH-HhHHHHHHHHHHHHHhCCCCc------HHHHHH
Confidence 111 1111 22222222233333 33467999999988755444 455699999999999999764 445588
Q ss_pred HHHHHHHHhhhccCCCCC
Q 019052 292 FVTILAGTFLLHKTKDLG 309 (347)
Q Consensus 292 ~~l~i~GVvlLs~~~~~~ 309 (347)
.++++.|+.+..+.+.++
T Consensus 316 ~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 316 GILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 899999999988655544
No 9
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.95 E-value=5.9e-07 Score=86.21 Aligned_cols=262 Identities=14% Similarity=0.117 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhccC---Cccc--CC------cccccccc---hhHHHHHHHHHHHHHHHHHHHhh-
Q 019052 21 LILALSSSIFIGSSFIVKKKGLKKAGAS---GVRA--GF------GGYSYLYE---PLWWVGMITMVVGEIANFAAYAF- 85 (347)
Q Consensus 21 v~lal~sa~~~a~G~~lqk~~~~~~~~~---~~~~--~~------~~~~~l~~---p~W~~G~~l~~~g~~~~~~aL~~- 85 (347)
.++++.+.++.+......|.+....+.- ..|- +. ..++-.++ +....|.+.+.....+.+.++.+
T Consensus 6 ~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 85 (295)
T PRK11689 6 TLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGYA 85 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4556666677777777777655443210 0000 00 00000111 12233333333444455555544
Q ss_pred ---cchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCHHHHHHHhcchhHHHHHH
Q 019052 86 ---APAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAA 162 (347)
Q Consensus 86 ---ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~~el~~~~~~~~fl~y~~ 162 (347)
.+.....-+..+..++..+++++++|||+++++|.|+++..+|++++...++.. +.++......+.. .-...
T Consensus 86 ~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~~~~~~~~~~-~G~~~ 160 (295)
T PRK11689 86 NTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGL----SLAELINNIASNP-LSYGL 160 (295)
T ss_pred hccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccc----hhhhhhhccccCh-HHHHH
Confidence 355555667788899999999999999999999999999999998776432110 1111100000000 00011
Q ss_pred HHHHHHHHHHH-hhccccCc-chhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC-CcccchhHHHHHHHHHHHHHHHHH
Q 019052 163 LVITAVFILIF-HYIPQYGQ-THIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSG-MNQLIYPQTWAFTLIVIVCVLTQM 239 (347)
Q Consensus 163 ~~~~~~~~l~~-~~~~r~g~-~~~l~y~~~~gllgg~t~l~~K~v~~~l~~~~~g-~~~~~~~~~y~ll~~~v~~~l~Q~ 239 (347)
......+...+ ...+|..+ .++..+.. ..++..... .. ..++ ...-.++..|..++....+...-.
T Consensus 161 ~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~----~~----~~~~~~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 161 AFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWI----KY----FLSPQPAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHH----HH----HHhcCccccCCHHHHHHHHHHHHHHHHHH
Confidence 11111111111 12233322 22222211 111111100 00 0112 111123334433333222333334
Q ss_pred HHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccC
Q 019052 240 NYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKT 305 (347)
Q Consensus 240 ~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~ 305 (347)
.+.|+++++.+++.+.+..+ ..|+++++.|.+++||..+ .....|.++++.|+++.-..
T Consensus 230 ~l~~~al~~~~a~~~s~~~~-l~Pv~a~i~~~~~lgE~~~------~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASY-FTPVLSAALAALLLSTPLS------FSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHccCHHHHHHHHH-hHHHHHHHHHHHHhCCCCc------HHHHHHHHHHHHhHHHHhhh
Confidence 55699999999886666655 4699999999999999764 45567888888888766543
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.94 E-value=2.2e-07 Score=86.48 Aligned_cols=203 Identities=15% Similarity=0.155 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCH
Q 019052 66 WVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESV 145 (347)
Q Consensus 66 ~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~ 145 (347)
..|.....+...+.+.++...|.+.+.++..+..+++.+++.+++|||++++++.|+.+.+.|+.++...+ +.+. +
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~--~~~~-~- 126 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG--NLSI-N- 126 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC--cccc-c-
Confidence 55666677888899999999999999999999999999999999999999999999999999998875332 1111 0
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHh-hccccCc-ch---hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCcccc
Q 019052 146 IEVWNLATEPAFLLYAALVITAVFILIFH-YIPQYGQ-TH---IMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLI 220 (347)
Q Consensus 146 ~el~~~~~~~~fl~y~~~~~~~~~~l~~~-~~~r~g~-~~---~l~y~~~~gllgg~t~l~~K~v~~~l~~~~~g~~~~~ 220 (347)
. ... .+. +. ..++...+. ..++..+ .+ ...+. .....++.... .-. ...+.....
T Consensus 127 --~------~G~-~~~-l~-a~~~~a~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~-------~~~~~~~~~ 186 (260)
T TIGR00950 127 --P------AGL-LLG-LG-SGISFALGTVLYKRLVKKEGPELLQFTG-WVLLLGALLLL-PFA-------WFLGPNPQA 186 (260)
T ss_pred --H------HHH-HHH-HH-HHHHHHHHHHHHhHHhhcCCchHHHHHH-HHHHHHHHHHH-HHH-------HhcCCCCCc
Confidence 0 111 111 11 111111111 1222111 11 12221 11112211111 000 112211122
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHH
Q 019052 221 YPQTWAF-TLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGT 299 (347)
Q Consensus 221 ~~~~y~l-l~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GV 299 (347)
++..|.. +...+.+........++++++.++..+..+.+ ..++.+++.+.+++||..+ + ....|..+++.|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~E~~~--~----~~~~G~~li~~g~ 259 (260)
T TIGR00950 187 LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILAL-AEPLVALLLGLLILGETLS--L----PQLIGGALIIAAV 259 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH-HHHHHHHHHHHHHhCCCCC--H----HHHHHHHHHHHhc
Confidence 4444432 22333333344445588999999887777665 5799999999999999653 3 3456666666665
No 11
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.91 E-value=7.1e-09 Score=86.13 Aligned_cols=103 Identities=11% Similarity=0.148 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHH--HHHHHHHHHHHHHHhhcchhhhhcchhHHH
Q 019052 22 ILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGM--ITMVVGEIANFAAYAFAPAILVTPLGALSI 99 (347)
Q Consensus 22 ~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~--~l~~~g~~~~~~aL~~ap~slv~Pl~~~~l 99 (347)
++-+++.++...|+.+.|++.+..+.. .-.+++..+.+. .++.+++.++..++...|+++.+|+.++++
T Consensus 4 ~~l~~ai~~ev~g~~~lK~s~~~~~~~---------~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~ 74 (111)
T PRK15051 4 LTLVFASLLSVAGQLCQKQATRPVAIG---------KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNF 74 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence 445667788899999999985432110 011123345554 567889999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccchhhHHHHHhhcceeEE
Q 019052 100 IISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (347)
Q Consensus 100 v~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv 133 (347)
+++.+++.+++|||++.++++|+.++++|++++.
T Consensus 75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988653
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.89 E-value=2.3e-07 Score=88.81 Aligned_cols=211 Identities=10% Similarity=0.046 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHH-hhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCH
Q 019052 67 VGMITMVVGEIANFAAY-AFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESV 145 (347)
Q Consensus 67 ~G~~l~~~g~~~~~~aL-~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~ 145 (347)
.|......+..+...+. ...|.....-+..+..+++.+++.+ +|||+++++|.|..+..+|+.++... ++.+. +.
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~--~~~~~-~~ 149 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG--GNLSG-NP 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC--ccccc-ch
Confidence 45554455566677777 8888888899999999999999975 79999999999999999998866321 11111 00
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHH-hhccccCcchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC-CcccchhH
Q 019052 146 IEVWNLATEPAFLLYAALVITAVFILIF-HYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSG-MNQLIYPQ 223 (347)
Q Consensus 146 ~el~~~~~~~~fl~y~~~~~~~~~~l~~-~~~~r~g~~~~l~y~~~~gllgg~t~l~~K~v~~~l~~~~~g-~~~~~~~~ 223 (347)
... .+ .+... .+...+ ...+|..+++........-..++..... ... ..++ .....++.
T Consensus 150 ---------~G~-l~-~l~a~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~ 210 (292)
T PRK11272 150 ---------WGA-IL-ILIAS-ASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLI---ASL----LSGERLTALPTLS 210 (292)
T ss_pred ---------HHH-HH-HHHHH-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH---HHH----HcCCcccccCCHH
Confidence 011 11 11111 111111 1233333222111111111122211110 000 0111 11222344
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhh
Q 019052 224 TWAFT-LIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLL 302 (347)
Q Consensus 224 ~y~ll-~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlL 302 (347)
.|..+ ...+.+......+.++++++.+++.+... ....++.+++.|.++++|... .....|.++++.|++++
T Consensus 211 ~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~t------~~~iiG~~lIi~gv~~~ 283 (292)
T PRK11272 211 GFLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETLS------PIEWLALGVIVFAVVLV 283 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHHHHHHH
Confidence 44433 33344445556677889999988766655 556799999999999999753 34567888899999998
Q ss_pred ccCCC
Q 019052 303 HKTKD 307 (347)
Q Consensus 303 s~~~~ 307 (347)
++++.
T Consensus 284 ~~~~~ 288 (292)
T PRK11272 284 TLGKY 288 (292)
T ss_pred HHHHh
Confidence 87654
No 13
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.86 E-value=2e-07 Score=89.52 Aligned_cols=223 Identities=11% Similarity=0.127 Sum_probs=136.6
Q ss_pred chhHHHHHHH---HHHHHHHHHHHHhhcchhhhhcchh-HHHHHHHHHHHHHhccccccch----hhHHHHHhhcceeEE
Q 019052 62 EPLWWVGMIT---MVVGEIANFAAYAFAPAILVTPLGA-LSIIISAALAHIILRERLHIFG----ILGCILCVVGSTTIV 133 (347)
Q Consensus 62 ~p~W~~G~~l---~~~g~~~~~~aL~~ap~slv~Pl~~-~~lv~~~~la~~~l~E~~~~~~----~~G~~li~~G~~liv 133 (347)
...|..|++. ...|++..+.|.....+++-.|+.. ++++++.+.+.+++||+.++++ +.|++++++|++++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 3455557766 7899999999999999999999999 9999999999999999999999 999999999988875
Q ss_pred eecCCCCcccCHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhccccCcchhHH--HHHHHH-HhhHHHHHHHHHHHHHHH
Q 019052 134 LHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMV--YIGVCS-LVGSLSVMSVKAIGIALK 210 (347)
Q Consensus 134 ~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~l~~~~~~r~g~~~~l~--y~~~~g-llgg~t~l~~K~v~~~l~ 210 (347)
...+++.+ .++.. ..+.=+.+..+. .+ ....+...+|+-..++.. +.-..| ++++....... . +
T Consensus 136 ~~~~~~~~---~~~~~---~~~~Gi~~~l~s-g~-~y~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~----~ 202 (290)
T TIGR00776 136 RSKDKSAG---IKSEF---NFKKGILLLLMS-TI-GYLVYVVVAKAFGVDGLSVLLPQAIGMVIGGIIFNLGH-I----L 202 (290)
T ss_pred eccccccc---ccccc---chhhHHHHHHHH-HH-HHHHHHHHHHHcCCCcceehhHHHHHHHHHHHHHHHHH-h----c
Confidence 54322111 00000 001111121111 11 111122222211111111 112222 23333222111 0 0
Q ss_pred HHhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHH
Q 019052 211 LTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMC 290 (347)
Q Consensus 211 ~~~~g~~~~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~l 290 (347)
. ..+.....|..++..+.. ..+..+...+++++......++.....++++.+.|+.+++|.. ++.++..+.+
T Consensus 203 ---~--~~~~~~~~~~~~~~Gi~~-~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~--~~~~~~~~~i 274 (290)
T TIGR00776 203 ---A--KPLKKYAILLNILPGLMW-GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK--TKREMIAISV 274 (290)
T ss_pred ---c--cchHHHHHHHHHHHHHHH-HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC--CcceeehhHH
Confidence 1 112222333333344443 5555556677774444445566666679999999999999976 5788999999
Q ss_pred HHHHHHHHHhhhccC
Q 019052 291 GFVTILAGTFLLHKT 305 (347)
Q Consensus 291 G~~l~i~GVvlLs~~ 305 (347)
|+++++.|+.+++-.
T Consensus 275 G~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 275 GIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998754
No 14
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.73 E-value=1.9e-08 Score=83.66 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhHhhhhhhccCCcc--cCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcch-hHHHHHHHH
Q 019052 28 SIFIGSSFIVKKKGLKKAGASGVR--AGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLG-ALSIIISAA 104 (347)
Q Consensus 28 a~~~a~G~~lqk~~~~~~~~~~~~--~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~-~~~lv~~~~ 104 (347)
+++.+..+.+.||+....++.... .-.+.+.+++||..++++++.-.|++..+..++-+|+|+..|+. +++++|+++
T Consensus 5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l 84 (113)
T PF10639_consen 5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL 84 (113)
T ss_pred hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence 467788889999988765443111 11234568999999999999999999999999999999999995 999999999
Q ss_pred HHHHHhccccccchhhHHHHHhhcceeE
Q 019052 105 LAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 105 la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
.++++-+|..+++.++|+.+++.|+.+.
T Consensus 85 ~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 85 TGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 9977766677788899999999999875
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.73 E-value=9.8e-08 Score=80.62 Aligned_cols=109 Identities=27% Similarity=0.380 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhcc---------------------CCcccCCcccccccchhH----HHHHHHHHHH
Q 019052 21 LILALSSSIFIGSSFIVKKKGLKKAGA---------------------SGVRAGFGGYSYLYEPLW----WVGMITMVVG 75 (347)
Q Consensus 21 v~lal~sa~~~a~G~~lqk~~~~~~~~---------------------~~~~~~~~~~~~l~~p~W----~~G~~l~~~g 75 (347)
.+.|+.+|++.+++.++-|-+.+..+. .++... ..-...+.| ..| +.-.++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~---~~~~~~k~~lflilSG-la~gls 80 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQA---GGEIGPKSWLFLILSG-LAGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceec---ccccCcceehhhhHHH-HHHHHH
Confidence 478999999999999999988774321 011100 000111122 233 445678
Q ss_pred HHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEE
Q 019052 76 EIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (347)
Q Consensus 76 ~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv 133 (347)
.++.+.|+..++.|.|.|+..++.++..+++..+||||++..+|+|+.+|++|++++.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 8899999999999999999999999999999999999999999999999999998774
No 16
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.72 E-value=4.9e-06 Score=77.50 Aligned_cols=212 Identities=18% Similarity=0.246 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHH-HHhccccccchhhHHHHHhhcceeEEeecCCCCcccC
Q 019052 66 WVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAH-IILRERLHIFGILGCILCVVGSTTIVLHAPAEREIES 144 (347)
Q Consensus 66 ~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~-~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t 144 (347)
..|......+..+.+.++...+.+..+++.....+++.+++. +++|||+++++|.|..+...|+.++...+..+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~ 153 (292)
T COG0697 74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSL 153 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHH
Confidence 344455667888999999999999999999999999999997 7779999999999999999999977554433332100
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHhhccccCcchhHHHHH-HHHHhhHHHHHHHHHHHHHHHHHhcCCcccchhH
Q 019052 145 VIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIG-VCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQ 223 (347)
Q Consensus 145 ~~el~~~~~~~~fl~y~~~~~~~~~~l~~~~~~r~g~~~~l~y~~-~~gllgg~t~l~~K~v~~~l~~~~~g~~~~~~~~ 223 (347)
... . ..+...+...+.....++..+........ .... +... ... .......+....+.
T Consensus 154 ----------~g~-~-~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~--~~~~~~~~~~~~~~ 212 (292)
T COG0697 154 ----------LGL-L-LALAAALLWALYTALVKRLSRLGPVTLALLLQLL-LALL------LLL--LFFLSGFGAPILSR 212 (292)
T ss_pred ----------HHH-H-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHH------HHH--HHHhccccccCCHH
Confidence 011 1 11111111111111122211111111111 1111 0000 000 00011111222333
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhh
Q 019052 224 TWAFTLI-VIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLL 302 (347)
Q Consensus 224 ~y~ll~~-~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlL 302 (347)
.|..+.. .+.+......+.++++++.++..+.+.. ...++.+++.+..+++|..+ .....|.++++.|+.+.
T Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~------~~~~~G~~li~~g~~l~ 285 (292)
T COG0697 213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLS------PAQLLGAALVVLGVLLA 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCc------HHHHHHHHHHHHHHHHH
Confidence 3333322 2333334456667899999988777776 55688888899999999754 34556668888899888
Q ss_pred ccC
Q 019052 303 HKT 305 (347)
Q Consensus 303 s~~ 305 (347)
..+
T Consensus 286 ~~~ 288 (292)
T COG0697 286 SLR 288 (292)
T ss_pred hcc
Confidence 866
No 17
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.69 E-value=1.2e-05 Score=77.12 Aligned_cols=255 Identities=14% Similarity=0.100 Sum_probs=141.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC---Cccc--CC--------cccccccchhH----HHHHHHHHHHHHH
Q 019052 16 DNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS---GVRA--GF--------GGYSYLYEPLW----WVGMITMVVGEIA 78 (347)
Q Consensus 16 ~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~---~~~~--~~--------~~~~~l~~p~W----~~G~~l~~~g~~~ 78 (347)
+...|+.+.+++.++.+.+...-|.+....+.. ..|- +. ..+...++..| +.|.. +.....+
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 87 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL 87 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence 346788999999999999999999876543210 0000 00 00011122222 45543 4566677
Q ss_pred HHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCHHHHHHHhcchhHH
Q 019052 79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPAFL 158 (347)
Q Consensus 79 ~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~~el~~~~~~~~fl 158 (347)
.+.++...|.+...-+..+..++..++++ |+.+ ++.+..+.++|+.++...+...+.. +. ...+
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~-~~---------~G~l 151 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLPLGQDVSHV-DL---------TGAA 151 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeeecCCCcccC-Ch---------HHHH
Confidence 88899999999888777777788777763 5443 4566777888988765322211111 10 0110
Q ss_pred HHHHHHHHHHHHHHHhh-ccccCcc-hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCcccchhHHHHH-HHHHHHHH
Q 019052 159 LYAALVITAVFILIFHY-IPQYGQT-HIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAF-TLIVIVCV 235 (347)
Q Consensus 159 ~y~~~~~~~~~~l~~~~-~~r~g~~-~~l~y~~~~gllgg~t~l~~K~v~~~l~~~~~g~~~~~~~~~y~l-l~~~v~~~ 235 (347)
+ .....++...+.. .++..++ .+... ....++++..... +. ...+.....++..|.. +...+.+.
T Consensus 152 --l-~l~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~---~~-----~~~~~~~~~~~~~~~~~l~lgv~~t 219 (293)
T PRK10532 152 --L-ALGAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFVP---IG-----ALQAGEALWHWSILPLGLAVAILST 219 (293)
T ss_pred --H-HHHHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHH---HH-----HHccCcccCCHHHHHHHHHHHHHHH
Confidence 1 1111111111211 2222111 11111 1222222211110 01 0111112234455443 34456667
Q ss_pred HHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCC
Q 019052 236 LTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTK 306 (347)
Q Consensus 236 l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~ 306 (347)
..+....|.++++.+++.+.+.. ...|+++.+.|.++|||..+ ....+|.+++++|+...++.+
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~-~l~Pv~a~l~~~l~lgE~~~------~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLM-SMEPALAAVSGMIFLGETLT------LIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHH-HhHHHHHHHHHHHHhCCCCc------HHHHHHHHHHHHHHHHHHhcC
Confidence 77778889999999987666654 55799999999999999754 445577777778887776554
No 18
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.66 E-value=1.9e-06 Score=82.62 Aligned_cols=220 Identities=15% Similarity=0.150 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCH
Q 019052 66 WVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESV 145 (347)
Q Consensus 66 ~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~ 145 (347)
..|+. ..+...++..++.+.+.+..+-+.++..+++++++++++|||++++++.|.+++++|+.+.. ..+.+ .+.
T Consensus 70 ~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~---~~~~~-~~~ 144 (302)
T TIGR00817 70 PVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS---DTELS-FNW 144 (302)
T ss_pred HHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc---CCccc-ccH
Confidence 44555 46777899999999999999999999999999999999999999999999999999997542 12211 111
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHH-hhccc------cCcchhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHhcCCc
Q 019052 146 IEVWNLATEPAFLLYAALVITAVFILIF-HYIPQ------YGQTHIMVYIGVCSLVGSLSV-MSVKAIGIALKLTLSGMN 217 (347)
Q Consensus 146 ~el~~~~~~~~fl~y~~~~~~~~~~l~~-~~~~r------~g~~~~l~y~~~~gllgg~t~-l~~K~v~~~l~~~~~g~~ 217 (347)
.+.+ +. ....++...+ ...+| .+......|....+.+.-.-. ...........+......
T Consensus 145 ---------~G~~--~~-l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~ 212 (302)
T TIGR00817 145 ---------AGFL--SA-MISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAIS 212 (302)
T ss_pred ---------HHHH--HH-HHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhc
Confidence 1111 01 1111111111 11222 122223344333222111110 000000000000000000
Q ss_pred ccchhHHHHHH-HHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHH
Q 019052 218 QLIYPQTWAFT-LIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTIL 296 (347)
Q Consensus 218 ~~~~~~~y~ll-~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i 296 (347)
.......|... .....+........+.++++.+++...- +....++++++.|.+++||... ....+|.++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv-~~~l~pv~~~~~~~~~lge~lt------~~~~~G~~lil 285 (302)
T TIGR00817 213 GVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSV-GNCMKRVVVIVVSILFFGTKIS------PQQVFGTGIAI 285 (302)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHH-HhhhhhhheeeeehhhcCCCCc------hhHHHHHHHHH
Confidence 00111123212 2222222222233346888888764444 3677889999999999999654 34557888899
Q ss_pred HHHhhhccCCCCC
Q 019052 297 AGTFLLHKTKDLG 309 (347)
Q Consensus 297 ~GVvlLs~~~~~~ 309 (347)
.|+.+-++.|.++
T Consensus 286 ~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 286 AGVFLYSRVKAQK 298 (302)
T ss_pred HHHHHHHHHhccC
Confidence 9999988766544
No 19
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.47 E-value=0.00014 Score=70.19 Aligned_cols=228 Identities=18% Similarity=0.231 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCccc
Q 019052 64 LWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIE 143 (347)
Q Consensus 64 ~W~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~ 143 (347)
.+..+ .++.++..++-.||.+.|...-+-+-+..++++++++.+++|+|.+++|+.+++++++|+++......++.+..
T Consensus 67 ~~~~~-~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~ 145 (303)
T PF08449_consen 67 YAILS-FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS 145 (303)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccccc
Confidence 34444 55567888888999999999999999999999999999999999999999999999999999887765444322
Q ss_pred CHHHHHHHhcchhHHHHHHHHHHHHHH-HHH--hhccccCc--chhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhcCCc
Q 019052 144 SVIEVWNLATEPAFLLYAALVITAVFI-LIF--HYIPQYGQ--THIMVYIGVCSLVG-SLSVMSVKAIGIALKLTLSGMN 217 (347)
Q Consensus 144 t~~el~~~~~~~~fl~y~~~~~~~~~~-l~~--~~~~r~g~--~~~l~y~~~~gllg-g~t~l~~K~v~~~l~~~~~g~~ 217 (347)
+.++... .-+....+. ..+.-.. -.+ +..++++. ...+.|-..-++.. .......+ ..+ ..... ..
T Consensus 146 ~~~~~~~---~~G~~ll~~-sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~-~~~-~~~~~--~f 217 (303)
T PF08449_consen 146 NSSSFSS---ALGIILLLL-SLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP-TGE-FRSAI--RF 217 (303)
T ss_pred ccccccc---hhHHHHHHH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhH-hhHHH--HH
Confidence 2110000 001111000 0000000 001 11123322 22344544444322 22211111 111 11000 11
Q ss_pred ccchhHHHHHHHHHHH-HHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHH
Q 019052 218 QLIYPQTWAFTLIVIV-CVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTIL 296 (347)
Q Consensus 218 ~~~~~~~y~ll~~~v~-~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i 296 (347)
...||..+..++.... .++.|. +.+.-.+++++... -+....--..+++.++++|++. .++.++ .|.++++
T Consensus 218 ~~~~p~~~~~l~~~s~~~~~g~~-~i~~~~~~~~al~~-t~v~t~Rk~~sillS~~~f~~~--~~~~~~----~G~~lv~ 289 (303)
T PF08449_consen 218 ISAHPSVLLYLLLFSLTGALGQF-FIFYLIKKFSALTT-TIVTTLRKFLSILLSVIIFGHP--LSPLQW----IGIVLVF 289 (303)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchhh-hhHHHHHHHHHHHHHHHhcCCc--CChHHH----HHHHHhH
Confidence 2467777666555544 455554 44556777776533 3444455778899999999974 455555 5566677
Q ss_pred HHHhhhccCCCC
Q 019052 297 AGTFLLHKTKDL 308 (347)
Q Consensus 297 ~GVvlLs~~~~~ 308 (347)
.|+.+=+..+.+
T Consensus 290 ~g~~~~~~~~~k 301 (303)
T PF08449_consen 290 AGIFLYSYAKKK 301 (303)
T ss_pred HHHHHHHHhhcc
Confidence 777765554443
No 20
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.44 E-value=7.2e-07 Score=73.75 Aligned_cols=67 Identities=30% Similarity=0.435 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEee
Q 019052 68 GMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH 135 (347)
Q Consensus 68 G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~ 135 (347)
|......+..+...|+.++| ..+.++.+++.+++.+++.+++|||+++++|.|++++.+|++++...
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 44445578899999999999 68999999999999999999999999999999999999999977553
No 21
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.42 E-value=3.7e-05 Score=75.90 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEE
Q 019052 75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (347)
Q Consensus 75 g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv 133 (347)
+..+...++++.+.+..+=+-+++.+++++++++++|||++++++.|++++++|+.+..
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 45556689999999999999999999999999999999999999999999999999875
No 22
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.35 E-value=4.1e-05 Score=72.98 Aligned_cols=214 Identities=13% Similarity=0.242 Sum_probs=127.2
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhcchhhhhcch-hHHHHHHHHHHHHHhccccccchhh----HHHHHhhcceeEEe
Q 019052 63 PLWWVGMIT---MVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLHIFGIL----GCILCVVGSTTIVL 134 (347)
Q Consensus 63 p~W~~G~~l---~~~g~~~~~~aL~~ap~slv~Pl~-~~~lv~~~~la~~~l~E~~~~~~~~----G~~li~~G~~liv~ 134 (347)
..|+.+++. -.+|+++|+.++....+|...|+. +.+++.|.+.+.+++||--+..+++ +.+++++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 456666654 468999999999999999999998 8999999999999999988877754 78899999987766
Q ss_pred ecCCCCcccCHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhccccCcchhHH--HHHHHH-HhhHHHHHHHHHHHHHHHH
Q 019052 135 HAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMV--YIGVCS-LVGSLSVMSVKAIGIALKL 211 (347)
Q Consensus 135 ~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~l~~~~~~r~g~~~~l~--y~~~~g-llgg~t~l~~K~v~~~l~~ 211 (347)
...++++..+..+..+ ..+ .. +..-+....|...+|..+.++.- +--.-| +++++--..
T Consensus 123 ~~~~~~~~~~~~~~~k-----gi~-~L--l~stigy~~Y~~~~~~~~~~~~~~~lPqaiGm~i~a~i~~~---------- 184 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKK-----GIL-AL--LISTIGYWIYSVIPKAFHVSGWSAFLPQAIGMLIGAFIFNL---------- 184 (269)
T ss_pred ccccccccccccchhh-----HHH-HH--HHHHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHHHHhh----------
Confidence 5544443222222221 111 11 11112223344455653332211 111111 222221111
Q ss_pred HhcCCcccchhHHHHHHHHHHHHHHHHH-HHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHH
Q 019052 212 TLSGMNQLIYPQTWAFTLIVIVCVLTQM-NYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMC 290 (347)
Q Consensus 212 ~~~g~~~~~~~~~y~ll~~~v~~~l~Q~-~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~l 290 (347)
+. .+.+.+...|.=++..+.-.+.-+ +++... .--...-+|+-|.. .+.+.++|+.+|+|.+ +..++....+
T Consensus 185 -~~-~~~~~~k~~~~nil~G~~w~ignl~~~is~~--~~G~a~af~lSQ~~-vvIStlgGI~il~E~K--t~ke~~~~~~ 257 (269)
T PF06800_consen 185 -FS-KKPFFEKKSWKNILTGLIWGIGNLFYLISAQ--KNGVATAFTLSQLG-VVISTLGGIFILKEKK--TKKEMIYTLI 257 (269)
T ss_pred -cc-cccccccchHHhhHHHHHHHHHHHHHHHhHH--hccchhhhhHHhHH-HHHHHhhhheEEEecC--chhhHHHHHH
Confidence 01 122333333332222222111111 222221 22234567787777 7788999999999987 5778899999
Q ss_pred HHHHHHHHHhh
Q 019052 291 GFVTILAGTFL 301 (347)
Q Consensus 291 G~~l~i~GVvl 301 (347)
|+++++.|.++
T Consensus 258 G~~Liv~G~il 268 (269)
T PF06800_consen 258 GLILIVIGAIL 268 (269)
T ss_pred HHHHHHHhhhc
Confidence 99999998875
No 23
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.21 E-value=1.3e-05 Score=67.68 Aligned_cols=98 Identities=12% Similarity=0.024 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcc-hhHHHHHHH
Q 019052 25 LSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSIIISA 103 (347)
Q Consensus 25 l~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~aL~~ap~slv~Pl-~~~~lv~~~ 103 (347)
+++.++--.|....|++.... +...|+..+.++++++.+...++...|+++.+|+ .+++.+.+.
T Consensus 8 ~~Ai~~Ev~~t~~LK~s~g~~---------------~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~ 72 (120)
T PRK10452 8 ALAIATEITGTLSMKWASVSE---------------GNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFIT 72 (120)
T ss_pred HHHHHHHHHHHHHHHhhccCC---------------CcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 344566667777777652110 1233567777788999999999999999999999 479999999
Q ss_pred HHHHHHhccccccchhhHHHHHhhcceeEEeecC
Q 019052 104 ALAHIILRERLHIFGILGCILCVVGSTTIVLHAP 137 (347)
Q Consensus 104 ~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~ 137 (347)
+.+.+++||+++..+++|+.+++.|++.+-..++
T Consensus 73 ~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 73 LFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999988755443
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.16 E-value=0.0001 Score=69.01 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEE
Q 019052 72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (347)
Q Consensus 72 ~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv 133 (347)
...+..+.+.++...|.+...-+..+..+|+++++++++|||+++++|.|+.+..+|++++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999998654
No 25
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.10 E-value=2.9e-05 Score=64.54 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhH-HHHHHHHHHHHHHHHHHHhhcchhhhhcc-hhHHHHHH
Q 019052 25 LSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLW-WVGMITMVVGEIANFAAYAFAPAILVTPL-GALSIIIS 102 (347)
Q Consensus 25 l~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W-~~G~~l~~~g~~~~~~aL~~ap~slv~Pl-~~~~lv~~ 102 (347)
+++.++-..|....|++. -++++.| +..+.++++++.+...|+...|+++..|+ .+++.+.+
T Consensus 8 ~~a~~~Ev~~~~~lK~s~----------------gf~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~ 71 (110)
T PRK09541 8 GGAILAEVIGTTLMKFSE----------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLI 71 (110)
T ss_pred HHHHHHHHHHHHHHHHhc----------------CCCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 344566677777777651 1234444 44556678888889999999999999999 67999999
Q ss_pred HHHHHHHhccccccchhhHHHHHhhcceeEEeec
Q 019052 103 AALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (347)
Q Consensus 103 ~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~ 136 (347)
.+.+.+++||+++..+++|..+++.|++++-..+
T Consensus 72 ~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 72 SLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999874443
No 26
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.03 E-value=1.9e-05 Score=75.77 Aligned_cols=124 Identities=16% Similarity=0.114 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCc-c--c-CC---------cccccccch-----hHHHHHHHHHHHHHHH
Q 019052 18 IKGLILALSSSIFIGSSFIVKKKGLKKAGASGV-R--A-GF---------GGYSYLYEP-----LWWVGMITMVVGEIAN 79 (347)
Q Consensus 18 ~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~-~--~-~~---------~~~~~l~~p-----~W~~G~~l~~~g~~~~ 79 (347)
..|.+++++++++.+...++.||..++.+.... . . +. .......++ .++.|++..++++.++
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~ 226 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLE 226 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999998886543221000 0 0 00 000011121 2466677778888999
Q ss_pred HHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCc
Q 019052 80 FAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE 141 (347)
Q Consensus 80 ~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~ 141 (347)
..++...|.+.+.++..+..+++.+++.+++||+++..+++|.+++++|+.......+++++
T Consensus 227 ~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 227 MIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999877555444433
No 27
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.01 E-value=0.00024 Score=66.86 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCC
Q 019052 69 MITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138 (347)
Q Consensus 69 ~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~ 138 (347)
-++|.+.+.+.++++...+.+.-|-+...-++++++++.++||+|+++++|++..+.++|++++-.....
T Consensus 24 A~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 24 ALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3678999999999999999999999999999999999999999999999999999999999988665443
No 28
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.97 E-value=2.2e-05 Score=74.26 Aligned_cols=282 Identities=20% Similarity=0.250 Sum_probs=157.8
Q ss_pred CCCCCCccccCCch----hhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC--Cccc-CCcc-----cccccch------
Q 019052 2 ADPNGHSWRDGMSS----DNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS--GVRA-GFGG-----YSYLYEP------ 63 (347)
Q Consensus 2 ~~~~~~~~~~~~~s----~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~--~~~~-~~~~-----~~~l~~p------ 63 (347)
+|||+.-||...+. ...+|+.+.-+| ++.+...++-++...-.++. ..|. +... .-|.+.|
T Consensus 17 ~d~~~r~~e~~~qri~~d~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g 95 (346)
T KOG4510|consen 17 PDPAPRWLERTLQRISKDKPNLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEG 95 (346)
T ss_pred cCCCccHHHHHhhHhhcCCCccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCC
Confidence 58888877732221 456799999998 88888888888765543322 1110 0000 0111111
Q ss_pred --hH--HHHHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEe----e
Q 019052 64 --LW--WVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL----H 135 (347)
Q Consensus 64 --~W--~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~----~ 135 (347)
.| +-|+.-+ .|..+...||...|++=..-+.-.+.+|+.++++.+||||.|+.|.+|..+...|+++++- |
T Consensus 96 ~R~~LiLRg~mG~-tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlF 174 (346)
T KOG4510|consen 96 KRKWLILRGFMGF-TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLF 174 (346)
T ss_pred cEEEEEeehhhhh-hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCccc
Confidence 11 2233222 4557778888888888777788889999999999999999999999999999999998853 3
Q ss_pred cCCCCcccCHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhccccCcc-h---hHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 019052 136 APAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQT-H---IMVYIGVCSLVGSLSVMSVKAIGIALKL 211 (347)
Q Consensus 136 ~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~l~~~~~~r~g~~-~---~l~y~~~~gllgg~t~l~~K~v~~~l~~ 211 (347)
+.+.....+. + .-+..|...+ .+..++.....|.+.+..|++ | .+-|.+.-++..++-.+.
T Consensus 175 G~~t~g~~~s-~--~~~~~~gt~a--ai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~---------- 239 (346)
T KOG4510|consen 175 GDTTEGEDSS-Q--VEYDIPGTVA--AISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCA---------- 239 (346)
T ss_pred CCCccccccc-c--ccccCCchHH--HHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHh----------
Confidence 3322211111 1 1122344221 111111111112222222332 2 223333222221111110
Q ss_pred HhcCCccc-chhHHHH-HHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 019052 212 TLSGMNQL-IYPQTWA-FTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEM 289 (347)
Q Consensus 212 ~~~g~~~~-~~~~~y~-ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~ 289 (347)
++ |.-|+ +.+.=|. ++...+.+.+.|+ ++.+++|+-.+-- +.++.+...+++++--+++|+|+-. . +-.
T Consensus 240 ~i-g~~~lP~cgkdr~l~~~lGvfgfigQI-llTm~lQiErAGp-vaim~~~dvvfAf~wqv~ff~~~Pt--~----ws~ 310 (346)
T KOG4510|consen 240 SI-GAVQLPHCGKDRWLFVNLGVFGFIGQI-LLTMGLQIERAGP-VAIMTYTDVVFAFFWQVLFFGHWPT--I----WSW 310 (346)
T ss_pred hc-cceecCccccceEEEEEehhhhhHHHH-HHHHHhhhhccCC-eehhhHHHHHHHHHHHHHHhcCCCh--H----HHh
Confidence 11 21122 2233333 3344566666664 7899999766543 3466777888999999999999753 3 344
Q ss_pred HHHHHHHHHHhhhccCCCCC
Q 019052 290 CGFVTILAGTFLLHKTKDLG 309 (347)
Q Consensus 290 lG~~l~i~GVvlLs~~~~~~ 309 (347)
+|.+.++..++..+++|-..
T Consensus 311 ~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 311 VGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred hceeeeehhHHHHHHHHHhc
Confidence 56666666666666666554
No 29
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.95 E-value=0.00043 Score=68.30 Aligned_cols=289 Identities=13% Similarity=0.091 Sum_probs=146.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC-----C-------c-----ccCCccccccc---chhHHHHHHH--
Q 019052 14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-----G-------V-----RAGFGGYSYLY---EPLWWVGMIT-- 71 (347)
Q Consensus 14 ~s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~-----~-------~-----~~~~~~~~~l~---~p~W~~G~~l-- 71 (347)
.++..+|++..+++.++.+.=.+-|||...-.-|. + + -......++++ ...|..+++.
T Consensus 2 ~~~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 2 SNAIILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred CchhHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence 34556677777777777666666666621111000 0 0 00001112222 3455555533
Q ss_pred -HHHHHHHHHHHHhhcchhhhhcch-hHHHHHHHHHHHHHhcccc---ccc----hhhHHHHHhhcceeEEeecCCCCcc
Q 019052 72 -MVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERL---HIF----GILGCILCVVGSTTIVLHAPAEREI 142 (347)
Q Consensus 72 -~~~g~~~~~~aL~~ap~slv~Pl~-~~~lv~~~~la~~~l~E~~---~~~----~~~G~~li~~G~~liv~~~~~~~~~ 142 (347)
-.+|++.++.+..+..+|+-.|+. +++++++.++..++++|=- +.. ..+|++++++|+++....+...++.
T Consensus 82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~ 161 (345)
T PRK13499 82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERK 161 (345)
T ss_pred HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 468999999999999999999996 6788999999999998633 333 3569999999999886644332222
Q ss_pred cCHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh-------ccc----cCcchh-HHHHHHHH-HhhHHHHHHHHHHHHHH
Q 019052 143 ESVIEVWNLATEPAFLLYAALVITAVFILIFHY-------IPQ----YGQTHI-MVYIGVCS-LVGSLSVMSVKAIGIAL 209 (347)
Q Consensus 143 ~t~~el~~~~~~~~fl~y~~~~~~~~~~l~~~~-------~~r----~g~~~~-l~y~~~~g-llgg~t~l~~K~v~~~l 209 (347)
.+.||-.+.-..... +.+.+..+.... |.+ .++ .|.... ......++ ++|++..-+.=+.-.+-
T Consensus 162 ~~~~~~~~~~~~KGi-~ialisgi~~~~--f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~ 238 (345)
T PRK13499 162 MGIKKAEEFNLKKGL-ILAVMSGIFSAC--FSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLA 238 (345)
T ss_pred cccccccccchHhHH-HHHHHHHHHHHH--HHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111100000001122 122222221111 110 011 122111 11112222 23443211100000000
Q ss_pred H-HHhcCCcccch-----hHHHHHHHHHHHHHHHHHHHHHHhhccc-C--cceehhhHHHHHHHHHHHHHHHHhcccCCC
Q 019052 210 K-LTLSGMNQLIY-----PQTWAFTLIVIVCVLTQMNYLNMALDTF-N--TAVVSPIYYVMFTSLTILASVIMFKDWDRQ 280 (347)
Q Consensus 210 ~-~~~~g~~~~~~-----~~~y~ll~~~v~~~l~Q~~~ln~aL~~~-d--a~~vvP~~~v~~~~~~i~~G~i~f~E~~~~ 280 (347)
+ ...+....+.. +..|++....-+.=..|..+.-.+-+.- + +....++-+-...+++.+.|+ +++|++..
T Consensus 239 k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a 317 (345)
T PRK13499 239 KNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGA 317 (345)
T ss_pred hCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCC
Confidence 1 00000111222 3444444443333445543332222211 1 222344555555678888888 59999998
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhccCC
Q 019052 281 NPTQIVTEMCGFVTILAGTFLLHKTK 306 (347)
Q Consensus 281 ~~~~~~~~~lG~~l~i~GVvlLs~~~ 306 (347)
+..+.....+|+++++.|.+++....
T Consensus 318 ~~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 318 SRRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999987543
No 30
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.85 E-value=0.0001 Score=59.18 Aligned_cols=85 Identities=15% Similarity=0.009 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHHH-HHHHHHHHHHHHHhhcchhhhhcch-hHHHHHH
Q 019052 25 LSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMI-TMVVGEIANFAAYAFAPAILVTPLG-ALSIIIS 102 (347)
Q Consensus 25 l~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~-l~~~g~~~~~~aL~~ap~slv~Pl~-~~~lv~~ 102 (347)
+++.++...++...|++. -++++.|..+.+ ++.++..+...|+...|+++..|+- +++.+..
T Consensus 7 ~~a~~~ev~~~~~lK~s~----------------g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~ 70 (93)
T PF00893_consen 7 LLAILFEVVGTIALKASH----------------GFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGV 70 (93)
T ss_dssp HHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------hhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 445567777888888732 223444555554 5788889999999999999999975 6999999
Q ss_pred HHHHHHHhccccccchhhHHHHH
Q 019052 103 AALAHIILRERLHIFGILGCILC 125 (347)
Q Consensus 103 ~~la~~~l~E~~~~~~~~G~~li 125 (347)
.+.+.+++||+++..++.|+.+|
T Consensus 71 ~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 71 TLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHhheeeC
Confidence 99999999999999999999875
No 31
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.81 E-value=0.00025 Score=58.86 Aligned_cols=98 Identities=15% Similarity=0.059 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHHHH-HHHHHHHHHHHHhhcchhhhhcch-h
Q 019052 19 KGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMIT-MVVGEIANFAAYAFAPAILVTPLG-A 96 (347)
Q Consensus 19 iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l-~~~g~~~~~~aL~~ap~slv~Pl~-~ 96 (347)
.....-+++.++--.|....|++. -+++|.|...+.. +++++.+-..|+...|+++..++- +
T Consensus 7 ~~~~~L~~Ai~~Ev~~t~~Lk~s~----------------gf~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~G 70 (109)
T PRK10650 7 IHAAWLALAIVLEIVANIFLKFSD----------------GFRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----------------CCcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 333444555666777777777641 2345666555544 567777888889999999999975 4
Q ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 97 LSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 97 ~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
++.+.+.+.+.+++||+++..++.|+.+++.|++.+
T Consensus 71 iG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 71 FGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998864
No 32
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.78 E-value=0.0002 Score=66.54 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC--cc----c-----------CCcccccccchhH----HHHHHHHHHH
Q 019052 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG--VR----A-----------GFGGYSYLYEPLW----WVGMITMVVG 75 (347)
Q Consensus 17 ~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~--~~----~-----------~~~~~~~l~~p~W----~~G~~l~~~g 75 (347)
...|..++++++++.+....+.|+...+.+... .. . ..+.........| +.|.+..+++
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999765432100 00 0 0000011112223 2344445678
Q ss_pred HHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcc
Q 019052 76 EIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGS 129 (347)
Q Consensus 76 ~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~ 129 (347)
..+++.++...|.+.+..+..+..+++.+++.+++||+++..++.|+.+++.|+
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999986
No 33
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.73 E-value=0.00013 Score=72.44 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCc---c----------------cCCcccccc--cchhHHHHHHH--
Q 019052 15 SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGV---R----------------AGFGGYSYL--YEPLWWVGMIT-- 71 (347)
Q Consensus 15 s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~---~----------------~~~~~~~~l--~~p~W~~G~~l-- 71 (347)
.++.+|.++++.++++.++..++||+..++-+.... . .+....... .+. +...++.
T Consensus 185 ~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~y~~ 263 (358)
T PLN00411 185 SDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDI-TLITIVTMA 263 (358)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccch-HHHHHHHHH
Confidence 356789999999999999999999986554321100 0 000000000 011 1112221
Q ss_pred --HHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCC
Q 019052 72 --MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139 (347)
Q Consensus 72 --~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~ 139 (347)
..+++.+|..++...+.+.+..+.-+..+++++++..+++|+++..+++|.++|+.|+.+......+|
T Consensus 264 i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 264 IITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 23467788889999999999999999999999999999999999999999999999998775443333
No 34
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.60 E-value=0.00032 Score=67.28 Aligned_cols=114 Identities=16% Similarity=0.071 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCccc--C----------Ccccccccch-hH----HHHHHHHHHHHHHHH
Q 019052 18 IKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA--G----------FGGYSYLYEP-LW----WVGMITMVVGEIANF 80 (347)
Q Consensus 18 ~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~--~----------~~~~~~l~~p-~W----~~G~~l~~~g~~~~~ 80 (347)
..|..++++++++.|.+.++.||-.++.+...... + .+....-.++ .| +.| +..++++.++.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~ 233 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWN 233 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 46999999999999999999999643321100000 0 0000001112 22 122 22456788899
Q ss_pred HHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 81 AAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 81 ~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
.++...|.+.+.++..+..+++.+++.+++||+++..+++|.++|+.|+.+.
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999998765
No 35
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.60 E-value=0.00016 Score=68.75 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhccCC-c-c--c-----C-C---------ccccc-ccchhH----HHHHHHHHH
Q 019052 19 KGLILALSSSIFIGSSFIVKKKGLKKAGASG-V-R--A-----G-F---------GGYSY-LYEPLW----WVGMITMVV 74 (347)
Q Consensus 19 iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~-~-~--~-----~-~---------~~~~~-l~~p~W----~~G~~l~~~ 74 (347)
.|+.++++++++.+.+.++.|+...+.+... . . . + . +.... ...+.| +.+.+..++
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 5777899999999999998887543221110 0 0 0 0 0 00000 011112 233344567
Q ss_pred HHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhccee
Q 019052 75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (347)
Q Consensus 75 g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~l 131 (347)
++.+++.++...|.+.+.++.-++.+++.+++.+++||+++..+++|.+++++|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 888999999999999999999999999999999999999999999999999999875
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.59 E-value=5.8e-05 Score=61.41 Aligned_cols=68 Identities=28% Similarity=0.430 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 65 WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 65 W~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
...|.+...++..+...++...|.+.++++..++.+++.+++..++||+++++++.|+.+++.|++++
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555556788899999999999999999999999999999999999999999999999999998754
No 37
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.57 E-value=0.00042 Score=66.33 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC-cc--------------cCCcccccccc-hhH----HHHHHHHHHHH
Q 019052 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VR--------------AGFGGYSYLYE-PLW----WVGMITMVVGE 76 (347)
Q Consensus 17 ~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~-~~--------------~~~~~~~~l~~-p~W----~~G~~l~~~g~ 76 (347)
...|..+++++++++|.+.+.+||..++.+... .. ..........+ ..| +.|+...+++.
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999998543221000 00 00000000011 123 23444456778
Q ss_pred HHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 77 IANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 77 ~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
.++..++...+.+.+..+..+..+++++++.+++||+++..+++|.++++.|+.+.
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~ 283 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV 283 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999765
No 38
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.56 E-value=0.00077 Score=55.57 Aligned_cols=91 Identities=13% Similarity=-0.041 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHH-HHHHHHHHHHHHHHhhcchhhhhcchh-HHHHHHH
Q 019052 26 SSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGM-ITMVVGEIANFAAYAFAPAILVTPLGA-LSIIISA 103 (347)
Q Consensus 26 ~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~-~l~~~g~~~~~~aL~~ap~slv~Pl~~-~~lv~~~ 103 (347)
++.++--.|....|++. -++++.|.... .++.+++.+-..|+...|+++..++-+ ++.+.+.
T Consensus 8 ~Ai~~Ev~~t~~Lk~s~----------------gf~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~ 71 (105)
T PRK11431 8 IAGLLEVVWAVGLKYTH----------------GFSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAA 71 (105)
T ss_pred HHHHHHHHHHHHHHhhh----------------CCccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHH
Confidence 34556666666677631 12345554444 456778888888999999999998765 9999999
Q ss_pred HHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 104 ALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 104 ~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
+.+.++.||+++..+++|+.+++.|++.+
T Consensus 72 lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 72 ITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999876
No 39
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.45 E-value=0.0034 Score=52.08 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=61.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHH
Q 019052 219 LIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAG 298 (347)
Q Consensus 219 ~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~G 298 (347)
+++|.........+.+...-.+++..++++-|....+|+.+ .-.+.+.+.|..+|||..+ ....+|+.++++|
T Consensus 31 ~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls------~~~~~Gi~lii~G 103 (111)
T PRK15051 31 KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVS------PRHWCGVAFIIGG 103 (111)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHH
Confidence 45554444444444555556778889999999999999998 7788889999999999765 4556788899999
Q ss_pred HhhhccC
Q 019052 299 TFLLHKT 305 (347)
Q Consensus 299 VvlLs~~ 305 (347)
+++++++
T Consensus 104 v~~i~~~ 110 (111)
T PRK15051 104 IVILGST 110 (111)
T ss_pred HHHHhcc
Confidence 9998864
No 40
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.42 E-value=0.0014 Score=55.72 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccC
Q 019052 233 VCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKT 305 (347)
Q Consensus 233 ~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~ 305 (347)
.+...+.|| +||+.++++.|+|+- -..+..+++.+..+++|..+ .-...|+.++.+|+++++++
T Consensus 77 ~glswl~Yf--~ALk~G~as~VvPld-k~svvl~~lls~lfL~E~ls------~~~~iG~~LI~~Gailvs~~ 140 (140)
T COG2510 77 GGLSWLLYF--RALKKGKASRVVPLD-KTSVVLAVLLSILFLGERLS------LPTWIGIVLIVIGAILVSLR 140 (140)
T ss_pred HHHHHHHHH--HHHhcCCcceEEEcc-cccHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhCeeeEecC
Confidence 334444555 799999999999984 34577888999999999765 33457899999999998863
No 41
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.40 E-value=0.0013 Score=63.14 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC-cc--------------------cCCc----ccccccchh-H----H
Q 019052 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VR--------------------AGFG----GYSYLYEPL-W----W 66 (347)
Q Consensus 17 ~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~-~~--------------------~~~~----~~~~l~~p~-W----~ 66 (347)
...|+.++++++++.+...+++||..++.+... .. .+.. .... .++. | +
T Consensus 141 ~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 219 (299)
T PRK11453 141 AMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVT-IDMTTILSLMY 219 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcc-CCHHHHHHHHH
Confidence 357999999999999999999998543221100 00 0000 0000 1222 2 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 67 ~G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
.|++..++++.++..++...+...+.++..+..+++.+++.+++||+++..+++|.+++++|+.+.
T Consensus 220 l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 220 LAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 244445677788888888899999999999999999999999999999999999999999998755
No 42
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.0013 Score=54.18 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHH-HHHHHHHHHHHHHHhhcchhhhhcc-hhHHHHHH
Q 019052 25 LSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGM-ITMVVGEIANFAAYAFAPAILVTPL-GALSIIIS 102 (347)
Q Consensus 25 l~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~-~l~~~g~~~~~~aL~~ap~slv~Pl-~~~~lv~~ 102 (347)
+++.++--.|....|++. -++|+.|.+.+ .++++++.+-..|+...|+.+..++ .+++.+.+
T Consensus 8 ~lAi~~EV~~~~~lK~s~----------------gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~ 71 (106)
T COG2076 8 LLAILLEVVGTTLLKYSD----------------GFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGT 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHh----------------cccccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 344455556666677652 22345555544 4467788888889999999999886 78999999
Q ss_pred HHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 103 AALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 103 ~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
.+.+.+++||+++..+++|..++++|++.+
T Consensus 72 ~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 72 ALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999865
No 43
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.026 Score=55.47 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEE
Q 019052 65 WWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (347)
Q Consensus 65 W~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv 133 (347)
|-+=-++|.+-+-++.++++-.|.+.-|....+-++.+++++..+|++|+++++|....+...|+.++-
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 344456788887899999999999999999999999999999999999999999999999999999875
No 44
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.10 E-value=0.017 Score=47.93 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=63.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHH
Q 019052 218 QLIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILA 297 (347)
Q Consensus 218 ~~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~ 297 (347)
.|+++.+.... +++...-.+++.+++++-|..+.+|+-...-++...+.|.++|+|..+ ..-.+|+.+++.
T Consensus 26 gf~~~~~~i~~---~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~------~~~~~gi~lIi~ 96 (110)
T PRK09541 26 GFTRLWPSVGT---IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD------LPAIIGMMLICA 96 (110)
T ss_pred CCCchhHHHHH---HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHH
Confidence 46777776643 334444567789999999999999988877788889999999999775 456688899999
Q ss_pred HHhhhccCC
Q 019052 298 GTFLLHKTK 306 (347)
Q Consensus 298 GVvlLs~~~ 306 (347)
||+++...+
T Consensus 97 GVi~l~l~~ 105 (110)
T PRK09541 97 GVLVINLLS 105 (110)
T ss_pred HHHHHhcCC
Confidence 999996544
No 45
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.94 E-value=0.0042 Score=57.68 Aligned_cols=116 Identities=23% Similarity=0.240 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC-cc------cC--------Ccc-c-ccccchhH--HHHHHHHHHHHH
Q 019052 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-VR------AG--------FGG-Y-SYLYEPLW--WVGMITMVVGEI 77 (347)
Q Consensus 17 ~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~-~~------~~--------~~~-~-~~l~~p~W--~~G~~l~~~g~~ 77 (347)
...|+.+++.++++.++..+++|+-. +..... .. .. ... . ...+.... ..|+...+++..
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~ 230 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYL 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999755 211100 00 00 000 0 01111111 233333445788
Q ss_pred HHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEE
Q 019052 78 ANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (347)
Q Consensus 78 ~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv 133 (347)
++..++...+...+.++..+..+++.+++.++++|+++.+++.|+++++.|+.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999988653
No 46
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.93 E-value=0.12 Score=51.38 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCC
Q 019052 75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAER 140 (347)
Q Consensus 75 g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~ 140 (347)
.+...=.||++-.++-..=+.+.+=+|++.++.++.+||+|..+.+++++.+.|++++.....++.
T Consensus 172 anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 172 ANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 333444589999999999999999999999999999999999999999999999999988766544
No 47
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.91 E-value=0.013 Score=50.04 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHH-HHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCC
Q 019052 228 TLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASV-IMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTK 306 (347)
Q Consensus 228 l~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~-i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~ 306 (347)
+...+++......+.+.++++.|.+..+|+....+....+.+-. ++|+|..+ ....+|.+++++||+++++++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls------~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFS------LKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHHHHhccCC
Confidence 33444555666777889999999999999988776444444333 48999765 566789999999999999765
Q ss_pred CC
Q 019052 307 DL 308 (347)
Q Consensus 307 ~~ 308 (347)
+.
T Consensus 125 ~~ 126 (129)
T PRK02971 125 TK 126 (129)
T ss_pred CC
Confidence 53
No 48
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.86 E-value=0.23 Score=47.89 Aligned_cols=115 Identities=20% Similarity=0.149 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh----hhhhhcc--------------CCcccCCcccccccchhHHHHHHHHHHHHHHH
Q 019052 18 IKGLILALSSSIFIGSSFIVKKK----GLKKAGA--------------SGVRAGFGGYSYLYEPLWWVGMITMVVGEIAN 79 (347)
Q Consensus 18 ~iGv~lal~sa~~~a~G~~lqk~----~~~~~~~--------------~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~ 79 (347)
--|+++++.+.++.+.--...|. +..+.-. .-.+...+.++..|+|+=+....+..+=...|
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~n 85 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLN 85 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34888888888877665555443 1111000 00011112345677887777776665555666
Q ss_pred HHHHhhcchh---hhhcchh-HHHHHHHHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 80 FAAYAFAPAI---LVTPLGA-LSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 80 ~~aL~~ap~s---lv~Pl~~-~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
..-+-++|-. +=+.+|= +..++|.++++.++|||+++.||+.+.+..+|+...
T Consensus 86 W~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~ 142 (293)
T COG2962 86 WWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ 142 (293)
T ss_pred HHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 6666666544 2222221 234578899999999999999999999999998754
No 49
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.75 E-value=0.038 Score=45.56 Aligned_cols=78 Identities=10% Similarity=0.159 Sum_probs=61.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHH
Q 019052 218 QLIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILA 297 (347)
Q Consensus 218 ~~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~ 297 (347)
.|+++.++++.++ +...-.+++.+++|.-|..+.+++-...-++...+.|..+|+|..+ ....+|+.+++.
T Consensus 25 gf~~~~~~~~~i~---~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~------~~~~~gi~lIi~ 95 (105)
T PRK11431 25 GFSRLTPSIITVT---AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESAS------PARLLSLALIVA 95 (105)
T ss_pred CCccHHHHHHHHH---HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHH
Confidence 4778887775533 3344467899999999988888888888888888999999999765 445678889999
Q ss_pred HHhhhcc
Q 019052 298 GTFLLHK 304 (347)
Q Consensus 298 GVvlLs~ 304 (347)
||+.+..
T Consensus 96 GVv~l~l 102 (105)
T PRK11431 96 GIIGLKL 102 (105)
T ss_pred HHHhhhc
Confidence 9999853
No 50
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.56 E-value=0.069 Score=45.09 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCC
Q 019052 232 IVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKD 307 (347)
Q Consensus 232 v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~ 307 (347)
+++...-.+++.++++.-|..+.+|+..-.-++...+.|..+|+|..+ ..-.+|+.+++.|++++....+
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s------~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLS------LMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHHHHhhcCCC
Confidence 334444567889999999999999998877888889999999999775 5566888999999999865443
No 51
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.48 E-value=0.068 Score=44.36 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=60.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHH
Q 019052 218 QLIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILA 297 (347)
Q Consensus 218 ~~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~ 297 (347)
.|++|.+....++ +...-.+++.+++|+-|..+.+++-.-.-++...+.|.++|+|..+ ..-.+|+.+++.
T Consensus 31 gf~~~~~~~~~~~---~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~------~~~~~gi~lIi~ 101 (109)
T PRK10650 31 GFRRKIYGILSLA---AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLN------RKGWIGLVLLLA 101 (109)
T ss_pred CCcchHHHHHHHH---HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHH
Confidence 4788887655433 3334467899999999988888888888888889999999999765 455678888999
Q ss_pred HHhhhc
Q 019052 298 GTFLLH 303 (347)
Q Consensus 298 GVvlLs 303 (347)
||+++-
T Consensus 102 GVi~lk 107 (109)
T PRK10650 102 GMVMIK 107 (109)
T ss_pred HHHHhc
Confidence 998873
No 52
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.37 E-value=0.039 Score=54.45 Aligned_cols=126 Identities=24% Similarity=0.270 Sum_probs=79.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC--------------Cccc----CCcccccccchhHHHHHHHHH
Q 019052 12 GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS--------------GVRA----GFGGYSYLYEPLWWVGMITMV 73 (347)
Q Consensus 12 ~~~s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~--------------~~~~----~~~~~~~l~~p~W~~G~~l~~ 73 (347)
...++..+|-+++++||+++|+..++|++-.++.+.. ..-. ..+..+.-.+ |-. ....
T Consensus 161 ~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~--~~~--~~~~ 236 (334)
T PF06027_consen 161 SSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWT--SQV--IGLL 236 (334)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC--hhh--HHHH
Confidence 5678899999999999999999999999977654310 0000 0011111111 111 1122
Q ss_pred HH-HHHHHHHHhhcch-------hhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCc
Q 019052 74 VG-EIANFAAYAFAPA-------ILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE 141 (347)
Q Consensus 74 ~g-~~~~~~aL~~ap~-------slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~ 141 (347)
+| .++.+.-+...|. ..+.-=..++-++++++..++.|++++..-++|.++|+.|.++.....+++.+
T Consensus 237 v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 237 VGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 22 2333333444443 32333234567889999999999999999999999999999987665554433
No 53
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=96.14 E-value=0.17 Score=48.70 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHhHhhhhhhccCCccc-CCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 019052 16 DNIKGLILALSSS-IFIGSSFIVKKKGLKKAGASGVRA-GFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTP 93 (347)
Q Consensus 16 ~~~iGv~lal~sa-~~~a~G~~lqk~~~~~~~~~~~~~-~~~~~~~l~~p~W~~G~~l~~~g~~~~~~aL~~ap~slv~P 93 (347)
..++=.++..++- .|.++=..++.++..+...++... ..+..+-++-.....=.+|.+.|..+..++|.+...+--|-
T Consensus 38 hpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQM 117 (372)
T KOG3912|consen 38 HPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQM 117 (372)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHH
Confidence 3444445555555 455555555555555433321110 01111223333334456788999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeec
Q 019052 94 LGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (347)
Q Consensus 94 l~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~ 136 (347)
+-+.-++|.-+++.-+|+++++.++|.|+..+.+|.+.+....
T Consensus 118 lRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d 160 (372)
T KOG3912|consen 118 LRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLD 160 (372)
T ss_pred hhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeee
Confidence 9999999999999999999999999999999999999887653
No 54
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.11 E-value=0.011 Score=56.66 Aligned_cols=62 Identities=13% Similarity=-0.034 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEe
Q 019052 73 VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (347)
Q Consensus 73 ~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~ 134 (347)
.+++.++..+++..|.+.++++.-++.+++.+++.++++|+++..++.|.++++.|+.++..
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999888776543
No 55
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.06 E-value=0.058 Score=51.08 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhcc-CC--------------cccCCcccccccchhHHHHHHHHHH----H
Q 019052 15 SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGA-SG--------------VRAGFGGYSYLYEPLWWVGMITMVV----G 75 (347)
Q Consensus 15 s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~-~~--------------~~~~~~~~~~l~~p~W~~G~~l~~~----g 75 (347)
+....|+.+|+.+..|.+.=.+.-||..+..+. .+ ....+....++.-+.-..++..-++ =
T Consensus 144 ~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalP 223 (292)
T COG5006 144 SLDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALP 223 (292)
T ss_pred cCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccc
Confidence 456789999999999999888888886642210 00 0000011223333333444444443 4
Q ss_pred HHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCC
Q 019052 76 EIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138 (347)
Q Consensus 76 ~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~ 138 (347)
+.+..+||...|...-.-+.++...+..+.+..+|||++|..||.|+.+++.++........+
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 568999999999999999999999999999999999999999999999999998866444333
No 56
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=95.88 E-value=0.17 Score=41.45 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 019052 237 TQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKDLGD 310 (347)
Q Consensus 237 ~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~~~~ 310 (347)
.+......|+++.+ ..+.++. ...++++.+.|.++|+|..+ .. ...|.+++.+|++++..++.+.+
T Consensus 47 ~~~~~~~~a~~~~~-~~v~~i~-~~~pi~~~ll~~~~~~er~~--~~----~~~a~~l~~~Gv~li~~~~~~~~ 112 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVAAIF-SLSPIFTALLSWLFFKERLS--PR----RWLAILLILIGVILIAWSDLTGA 112 (113)
T ss_pred HHHHHHHHHHHhCc-HHHHHHH-HHHHHHHHHHHHHHhcCCCC--HH----HHHHHHHHHHHHHHHhhhhcccC
Confidence 44555567888888 4555554 56899999999999999654 33 45677888999999987765543
No 57
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.77 E-value=0.066 Score=44.20 Aligned_cols=78 Identities=22% Similarity=0.205 Sum_probs=59.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHH
Q 019052 219 LIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAG 298 (347)
Q Consensus 219 ~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~G 298 (347)
|+.+.+++..++ +...-.+++.+|+|.-|..+.+++-.-.-++...+.|.++|+|..+ ..-..|+.++++|
T Consensus 27 f~~~~~~il~~v---~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~------~~~~~gl~LiiaG 97 (106)
T COG2076 27 FTRLWPSILTIV---GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLS------LIKLLGLALILAG 97 (106)
T ss_pred ccccchHHHHHH---HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCC------HHHHHHHHHHHHH
Confidence 566665554333 3334467889999999988888888888888888899999999876 4566788899999
Q ss_pred HhhhccC
Q 019052 299 TFLLHKT 305 (347)
Q Consensus 299 VvlLs~~ 305 (347)
++.|-..
T Consensus 98 vi~Lk~~ 104 (106)
T COG2076 98 VIGLKLG 104 (106)
T ss_pred HHHhhhc
Confidence 9988543
No 58
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=95.75 E-value=0.019 Score=54.98 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCccc-------CC----------ccccccc----------c--hhH
Q 019052 15 SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA-------GF----------GGYSYLY----------E--PLW 65 (347)
Q Consensus 15 s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~-------~~----------~~~~~l~----------~--p~W 65 (347)
+....|.+++++++++.++..++.||...+.+.+.... +. +..+... . ..|
T Consensus 141 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (302)
T TIGR00817 141 SFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIY 220 (302)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHH
Confidence 34567999999999999999999998654211100000 00 0000000 0 112
Q ss_pred HHHHH----HHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 66 WVGMI----TMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 66 ~~G~~----l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
..++. ++...+..++.++...+.+...-.+.+..+++.+++.+++||+++..+++|.++++.|+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 11211 12222245556788888888999999999999999999999999999999999999998754
No 59
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.33 E-value=0.1 Score=44.30 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhh----ccC-------------------------CcccCCccccccc-----c--h
Q 019052 20 GLILALSSSIFIGSSFIVKKKGLKKA----GAS-------------------------GVRAGFGGYSYLY-----E--P 63 (347)
Q Consensus 20 Gv~lal~sa~~~a~G~~lqk~~~~~~----~~~-------------------------~~~~~~~~~~~l~-----~--p 63 (347)
|.++++.|+++.++=.+++|+..++. .+. +.+......+..+ . .
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67889999999999999988877663 100 0000000000110 1 1
Q ss_pred hHHHHHHH--HHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhccee
Q 019052 64 LWWVGMIT--MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (347)
Q Consensus 64 ~W~~G~~l--~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~l 131 (347)
.+++.... ..+-+..++..+...+...-+=++.+--+.+.+++..+++|+++.+++.|+.++++|...
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 22221111 123445666677777777788888899999999999999999999999999999999864
No 60
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.24 E-value=0.031 Score=53.69 Aligned_cols=114 Identities=23% Similarity=0.180 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC-c-cc-----CCc----c----cccccchhHH----HHHHHHHHHHH
Q 019052 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASG-V-RA-----GFG----G----YSYLYEPLWW----VGMITMVVGEI 77 (347)
Q Consensus 17 ~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~-~-~~-----~~~----~----~~~l~~p~W~----~G~~l~~~g~~ 77 (347)
...|+..+++++++++.-...=|+.. ..+... . .. +.. . ++. .+..+| .|+. ..+++.
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~ia~~ 226 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGIGNF 226 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHHHHH
Confidence 46699999999999999888888642 111100 0 00 000 0 111 122333 4444 467888
Q ss_pred HHHHHHh-hcchhhhhcchhHHHHHHHHHHHHHhccccccchh----hHHHHHhhcceeEE
Q 019052 78 ANFAAYA-FAPAILVTPLGALSIIISAALAHIILRERLHIFGI----LGCILCVVGSTTIV 133 (347)
Q Consensus 78 ~~~~aL~-~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~----~G~~li~~G~~liv 133 (347)
+.+.++. ..+.+...++..+..+.+.+.+.+++||+.+++++ +|.++++.|+.++.
T Consensus 227 ~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 227 FYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 8888889 99999999999999999999999999999999999 99999999988764
No 61
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.95 E-value=0.22 Score=39.78 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=31.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHH
Q 019052 218 QLIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVT 287 (347)
Q Consensus 218 ~~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~ 287 (347)
.++++.++... +.+-..-.+++.+++++-|..+.+|+....-++...+.|..+|+|..+ ..++..
T Consensus 25 g~~~~~~~~~~---~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s--~~~~~g 89 (93)
T PF00893_consen 25 GFTQLIPTILA---VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLS--LSKWLG 89 (93)
T ss_dssp ---------HH---HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_pred hhcchhhHHHH---HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHhh
Confidence 35566555433 224445568899999999999999999988889999999999999654 444433
No 62
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=94.86 E-value=0.087 Score=42.42 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhc
Q 019052 231 VIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLH 303 (347)
Q Consensus 231 ~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs 303 (347)
.+.+......+.+.|+++.+++.+.++.+ ..++.+.+.|.++++|..+ .....|+.+++.|+++++
T Consensus 60 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~------~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 60 GLLGTALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERPS------WRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hccceehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHHHHHH
Confidence 33333444566788999999998888877 6899999999999999764 345677777888887764
No 63
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.83 E-value=3.8 Score=39.08 Aligned_cols=201 Identities=13% Similarity=0.111 Sum_probs=101.8
Q ss_pred HHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCcccCHHHHHHHhcchh
Q 019052 77 IANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAEREIESVIEVWNLATEPA 156 (347)
Q Consensus 77 ~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~~~t~~el~~~~~~~~ 156 (347)
++--.++...|+-+...+--.+.+....++.+ +.+|.+.+.+.+.|..++.-.++..++. + |-
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~sR------r~~d~vwvaLAvlGi~lL~p~~~~~~~l-D----------p~ 148 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLSSR------RLRDFVWVALAVLGIWLLLPLGQSVWSL-D----------PV 148 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHhcc------chhhHHHHHHHHHHHHhheeccCCcCcC-C----------HH
Confidence 44456788889888877776666655554443 4567788888899988886655443332 1 21
Q ss_pred HHHHHHHHHHHHHHHHHhh-ccccCc-chhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHH-HHH
Q 019052 157 FLLYAALVITAVFILIFHY-IPQYGQ-THIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLI-VIV 233 (347)
Q Consensus 157 fl~y~~~~~~~~~~l~~~~-~~r~g~-~~~l~y~~~~gllgg~t~l~~K~v~~~l~~~~~g~~~~~~~~~y~ll~~-~v~ 233 (347)
=..|.... -.+...|.+ .+|.|+ .+.-.-.+++-+++++-++- -+++ +....+.+|..-..-+. .+.
T Consensus 149 Gv~~Al~A--G~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~P-ig~~-------~ag~~l~~p~ll~laLgvavl 218 (292)
T COG5006 149 GVALALGA--GACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLP-IGAA-------QAGPALFSPSLLPLALGVAVL 218 (292)
T ss_pred HHHHHHHH--hHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhh-hhhh-------hcchhhcChHHHHHHHHHHHH
Confidence 11121111 112222322 344442 11111111111222222211 0101 12234555553332222 222
Q ss_pred HHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCC
Q 019052 234 CVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKDL 308 (347)
Q Consensus 234 ~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~~ 308 (347)
+...--..-.-+|++-++. ..-+..+.++..+-+.|.+++||.. +..||+...+= .....|+.+=.+++..
T Consensus 219 SSalPYsLEmiAL~rlp~~-~F~~LlSLePa~aAl~G~i~L~e~l--s~~qwlaI~~V-iaAsaG~~lt~~~~~~ 289 (292)
T COG5006 219 SSALPYSLEMIALRRLPAR-TFGTLLSLEPALAALSGLIFLGETL--TLIQWLAIAAV-IAASAGSTLTARKPAV 289 (292)
T ss_pred hcccchHHHHHHHhhCChh-HHHHHHHhhHHHHHHHHHHHhcCCC--CHHHHHHHHHH-HHHHhccccccCCCCC
Confidence 2222222234488877654 5667788899999999999999975 56676655433 2344555554444443
No 64
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.08 E-value=1 Score=41.50 Aligned_cols=62 Identities=24% Similarity=0.210 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeec
Q 019052 75 GEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (347)
Q Consensus 75 g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~ 136 (347)
.+.....||.....+.+..+.+..--|..+++...||+|+...+++.+.+.+.|++++.+..
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 44667888999999999999999999999999999999999999999999999999886643
No 65
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=93.99 E-value=0.39 Score=46.02 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=53.2
Q ss_pred HhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 019052 244 MALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKDLGDG 311 (347)
Q Consensus 244 ~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~~~~~ 311 (347)
++.++-.-+...|+-+..--+.+.+.|+++|+||.. ..+...=.++++++++|+++-+.+++.++.
T Consensus 64 ~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~--~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 64 KSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTT--TTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCC--cchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 455666667889999998889999999999999985 445566667889999999999887776654
No 66
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=93.96 E-value=0.47 Score=45.66 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-chhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCCc
Q 019052 63 PLWWVGMITMVVGEIANFAAYAFA-PAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE 141 (347)
Q Consensus 63 p~W~~G~~l~~~g~~~~~~aL~~a-p~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~~ 141 (347)
..|..=+.++..-+..|=.|+.|. |.-+=-=+=+.+++.|+.+++.++|+|-+.+++..++++.+|+++...+..++..
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 355666666667777887788775 3333334668899999999999999999999999999999999998887766553
No 67
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.78 E-value=0.68 Score=45.42 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEe
Q 019052 73 VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVL 134 (347)
Q Consensus 73 ~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~ 134 (347)
.+|-.+.-.++..-|++.+|-+-++..++++++++++.+|+.+...+.-...++.|+.+...
T Consensus 94 ~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 94 CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 46777788899999999999999999999999999999999999999999999999886644
No 68
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.36 E-value=0.51 Score=43.13 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC------C--------------cccCC--cccc-cc-cchhHHHHHH
Q 019052 15 SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS------G--------------VRAGF--GGYS-YL-YEPLWWVGMI 70 (347)
Q Consensus 15 s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~------~--------------~~~~~--~~~~-~l-~~p~W~~G~~ 70 (347)
.+...|+...+.+.++-++..+.|++..++.+.. . ..++. .... .. ..+.+|.-.+
T Consensus 81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (222)
T TIGR00803 81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGL 160 (222)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHH
Confidence 3567787777777788888889998875543200 0 00000 0011 01 1222333334
Q ss_pred HHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhccee
Q 019052 71 TMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (347)
Q Consensus 71 l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~l 131 (347)
+...|.++-...+.+++.....=...+..+++.+++.++++|+++...|.|+.++..|+.+
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 4456666666778888888999999999999999999999999999999999999998753
No 69
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=92.60 E-value=0.78 Score=45.29 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=43.2
Q ss_pred HHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhccee
Q 019052 81 AAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (347)
Q Consensus 81 ~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~l 131 (347)
.++...+.....=.+.+.-++..+++.+++||+++..+++|.++++.|+.+
T Consensus 295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 456666666666677778889999999999999999999999999999865
No 70
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=1 Score=36.95 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=40.1
Q ss_pred hhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCC
Q 019052 90 LVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139 (347)
Q Consensus 90 lv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~ 139 (347)
+-+.-|.+-++.+++-....-|.+.++.||.|.++|.+|+.++ .++|..
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vi-l~~pR~ 108 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVI-LFGPRG 108 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeee-EeCCCC
Confidence 4456678888888999999999999999999999999996655 556643
No 71
>PRK02237 hypothetical protein; Provisional
Probab=91.42 E-value=0.77 Score=37.97 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=39.9
Q ss_pred hhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCC
Q 019052 90 LVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138 (347)
Q Consensus 90 lv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~ 138 (347)
+-+.-|.+-++.+++-.+..-|+|.++.|++|.++|.+|+.++ .++|+
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI-~~~pR 108 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI-MYAPR 108 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh-eecCC
Confidence 3455677778888899999999999999999999999998866 45554
No 72
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=91.35 E-value=0.29 Score=40.41 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=76.5
Q ss_pred HHHHHHHHHhHhhhhhhccC-Cc-c----cCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcch-hHHHHH
Q 019052 29 IFIGSSFIVKKKGLKKAGAS-GV-R----AGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLG-ALSIII 101 (347)
Q Consensus 29 ~~~a~G~~lqk~~~~~~~~~-~~-~----~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~-~~~lv~ 101 (347)
++.+.-+.+-||+...-++. ++ + .-.+.+.++.|+..++=+++---|+.+.+.-|+-+|.++..|+. ++++.|
T Consensus 13 llWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfaf 92 (125)
T KOG4831|consen 13 LLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAF 92 (125)
T ss_pred HHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHH
Confidence 55666667777765443221 11 0 01134566778888999999888999999999999999999985 678899
Q ss_pred HHHHHHHHhccccccch-hhHHHHHhhcceeEE
Q 019052 102 SAALAHIILRERLHIFG-ILGCILCVVGSTTIV 133 (347)
Q Consensus 102 ~~~la~~~l~E~~~~~~-~~G~~li~~G~~liv 133 (347)
+.+++..+ +|+...+. ..|+.++++|+.+.+
T Consensus 93 ta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 93 TAIFGKAL-GEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHh-ccccccceeehhhhHHhhhhhhee
Confidence 99988765 77766555 679999999987653
No 73
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=91.23 E-value=1.3 Score=42.51 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCccc-------C-------------Cc----ccccccchhHHHHHH
Q 019052 15 SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRA-------G-------------FG----GYSYLYEPLWWVGMI 70 (347)
Q Consensus 15 s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~-------~-------------~~----~~~~l~~p~W~~G~~ 70 (347)
.++..|+++.+++-++.++-.+.|+|-.++.+.+..+. + .+ ..-..+.|..+.-++
T Consensus 150 ~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~ 229 (303)
T PF08449_consen 150 FSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLL 229 (303)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHH
Confidence 33445999999999999999999999876644321000 0 00 001122233333333
Q ss_pred HH-HHHHHHHHHH---HhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhccee
Q 019052 71 TM-VVGEIANFAA---YAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTT 131 (347)
Q Consensus 71 l~-~~g~~~~~~a---L~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~l 131 (347)
+. ..+.+++... ...-......-+..+--+++.+++..+.+++++..+|.|+.++..|..+
T Consensus 230 ~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 230 LFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 32 2333433222 2223333344455566678899999999999999999999999999764
No 74
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.96 E-value=0.19 Score=47.53 Aligned_cols=219 Identities=16% Similarity=0.228 Sum_probs=124.6
Q ss_pred chhHHHHHHH---HHHHHHHHHHHHhhcchhhhhcch-hHHHHHHHHHHHHHhccccccchh----hHHHHHhhcceeEE
Q 019052 62 EPLWWVGMIT---MVVGEIANFAAYAFAPAILVTPLG-ALSIIISAALAHIILRERLHIFGI----LGCILCVVGSTTIV 133 (347)
Q Consensus 62 ~p~W~~G~~l---~~~g~~~~~~aL~~ap~slv~Pl~-~~~lv~~~~la~~~l~E~~~~~~~----~G~~li~~G~~liv 133 (347)
-..|..|++- -.+|...|+-|......|...|+. +.+++-+.+++-+.+||=-+..+. ++.++++.|+.+-.
T Consensus 56 ~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs 135 (288)
T COG4975 56 LTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTS 135 (288)
T ss_pred hhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEee
Confidence 3467777754 247888999999999999999996 578999999999999997777663 46788899988776
Q ss_pred eecCCCCcccCHHHHHHHhcchhHHHHHHHHHHHHH--HHHHhhccccCcchhHHHHHHHHHhhHHHHHHHHHHHHHHH-
Q 019052 134 LHAPAEREIESVIEVWNLATEPAFLLYAALVITAVF--ILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALK- 210 (347)
Q Consensus 134 ~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~--~l~~~~~~r~g~~~~l~y~~~~gllgg~t~l~~K~v~~~l~- 210 (347)
.-.+.+.+..+.+++.+-. +.....- ...|.+..|.=. +.+.++++-++++-.+.
T Consensus 136 ~~~~~nk~~~~~~n~kkgi----------~~L~iSt~GYv~yvvl~~~f~------------v~g~saiLPqAiGMv~~a 193 (288)
T COG4975 136 KQDRNNKEEENPSNLKKGI----------VILLISTLGYVGYVVLFQLFD------------VDGLSAILPQAIGMVIGA 193 (288)
T ss_pred eeccccccccChHhhhhhe----------eeeeeeccceeeeEeeecccc------------ccchhhhhHHHHHHHHHH
Confidence 6555444444544443311 0000000 001111222100 23333333333322111
Q ss_pred --HHhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHH
Q 019052 211 --LTLSGMNQLIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTE 288 (347)
Q Consensus 211 --~~~~g~~~~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~ 288 (347)
....+.+-..+-.+|.-+...+.-+..-+.++-.+=+..-++ ...+-|.. .+.+.++|+.+++|.+ +..++...
T Consensus 194 li~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt-~FSlSQlg-ViisTiGGIl~L~ekK--tkkEm~~v 269 (288)
T COG4975 194 LILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVAT-SFSLSQLG-VIISTIGGILFLGEKK--TKKEMVYV 269 (288)
T ss_pred HHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceee-eeeHhhhe-eeeeecceEEEEeccC--chhhhhhh
Confidence 011222334445555544444333333322221111222111 11122221 2356789999999987 58899999
Q ss_pred HHHHHHHHHHHhhhccCC
Q 019052 289 MCGFVTILAGTFLLHKTK 306 (347)
Q Consensus 289 ~lG~~l~i~GVvlLs~~~ 306 (347)
..|+.++++|.+++.--|
T Consensus 270 ~iGiilivvgai~lg~~K 287 (288)
T COG4975 270 IIGIILIVVGAILLGIAK 287 (288)
T ss_pred hhhHHHHHHHhhhhheec
Confidence 999999999999987554
No 75
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.55 E-value=16 Score=34.72 Aligned_cols=211 Identities=16% Similarity=0.115 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCC----CCcccCH
Q 019052 70 ITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA----EREIESV 145 (347)
Q Consensus 70 ~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~----~~~~~t~ 145 (347)
.-|.+..+..=.|+.+.|.-.---=-+.-.+=.++++-.+.|.+-++++...+++|++|+.++..--++ +++..-.
T Consensus 93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~ 172 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGF 172 (337)
T ss_pred HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccch
Confidence 334455555555666665432110112223455778888999999999999999999999988765333 2222233
Q ss_pred HHHHHHhcchhHHHHHHHHH-HHHHHHHHhhcc--ccCcchhHHHHH-HHHHhhHHHHHHHHHHHHHHHHHhcCCcccch
Q 019052 146 IEVWNLATEPAFLLYAALVI-TAVFILIFHYIP--QYGQTHIMVYIG-VCSLVGSLSVMSVKAIGIALKLTLSGMNQLIY 221 (347)
Q Consensus 146 ~el~~~~~~~~fl~y~~~~~-~~~~~l~~~~~~--r~g~~~~l~y~~-~~gllgg~t~l~~K~v~~~l~~~~~g~~~~~~ 221 (347)
.|+.-.++ +.. ......-=+++. +.+..+.+.|.- .+.+.=|...+++- .+.+.+. ..-+|
T Consensus 173 GElLL~lS---------L~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTG----ElweF~y--F~~Rh 237 (337)
T KOG1580|consen 173 GELLLILS---------LAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTG----ELWEFFY--FVQRH 237 (337)
T ss_pred HHHHHHHH---------HHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehh----hHHHHHH--HHHhc
Confidence 34322110 000 000000001111 112223333322 33332222222211 1111100 12357
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHh
Q 019052 222 PQTWA-FTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTF 300 (347)
Q Consensus 222 ~~~y~-ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVv 300 (347)
|..|. +....+.+++.|. |.=+-...|.|.. ..+.+..--++++++++++|+... ++.|| +|..+++.|..
T Consensus 238 P~~~~~l~l~ai~s~LGQ~-fIF~tv~~FgPLt-CSivTTTRKfFTil~SVllf~npl--s~rQw----lgtvlVF~aL~ 309 (337)
T KOG1580|consen 238 PYVFWDLTLLAIASCLGQW-FIFKTVEEFGPLT-CSIVTTTRKFFTILISVLLFNNPL--SGRQW----LGTVLVFSALT 309 (337)
T ss_pred cHHHHHHHHHHHHHHhhhH-HHHHHHHHhCCee-EEEEeehHHHHHHHHHHHHhcCcC--cHHHH----HHHHHHHHHhh
Confidence 76654 4555566667763 4444455565432 223333455688999999999854 56555 55666666554
Q ss_pred hhc
Q 019052 301 LLH 303 (347)
Q Consensus 301 lLs 303 (347)
.-.
T Consensus 310 ~D~ 312 (337)
T KOG1580|consen 310 ADV 312 (337)
T ss_pred hHh
Confidence 433
No 76
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=88.66 E-value=1.3 Score=44.18 Aligned_cols=131 Identities=20% Similarity=0.246 Sum_probs=89.9
Q ss_pred CccccCCc--hhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC-Cccc--C---Ccccccccch---------------
Q 019052 7 HSWRDGMS--SDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-GVRA--G---FGGYSYLYEP--------------- 63 (347)
Q Consensus 7 ~~~~~~~~--s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~-~~~~--~---~~~~~~l~~p--------------- 63 (347)
++|..+.. +...+|-++|+.||+++|+=.++-||...+++++ +... | --..-++.-|
T Consensus 233 ~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP 312 (416)
T KOG2765|consen 233 DSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELP 312 (416)
T ss_pred cccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCC
Confidence 34444443 4459999999999999999999999977666321 1110 0 0000001111
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeec
Q 019052 64 -------LWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (347)
Q Consensus 64 -------~W~~G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~ 136 (347)
....|.+..+++-.+|..|.-.-...++.-=.++++..+++.=..+-+.+.+...++|.+.|.+|-+++-...
T Consensus 313 ~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 313 SSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred CCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 1245655667777888888887777777777778888888777777788999999999999999988775544
Q ss_pred C
Q 019052 137 P 137 (347)
Q Consensus 137 ~ 137 (347)
.
T Consensus 393 ~ 393 (416)
T KOG2765|consen 393 E 393 (416)
T ss_pred c
Confidence 3
No 77
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=88.34 E-value=2.2 Score=35.66 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=49.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHH
Q 019052 219 LIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAG 298 (347)
Q Consensus 219 ~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~G 298 (347)
+.+|...+-+++-..+.+. ..-.|++.|-+..+|+.+..--+++.+.|..+.+|... . --.+|+.++++|
T Consensus 39 l~n~~y~ipf~lNq~GSv~----f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~--~----~~~~G~~Li~~G 108 (113)
T PF10639_consen 39 LLNPKYIIPFLLNQSGSVL----FFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVIS--R----RTWLGMALILAG 108 (113)
T ss_pred HHhHHHHHHHHHHHHHHHH----HHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccc--h----hHHHHHHHHHcC
Confidence 4555544433333333222 23467889999999999999899999999777777543 2 235788888888
Q ss_pred Hhh
Q 019052 299 TFL 301 (347)
Q Consensus 299 Vvl 301 (347)
+.+
T Consensus 109 v~L 111 (113)
T PF10639_consen 109 VAL 111 (113)
T ss_pred eee
Confidence 865
No 78
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=84.75 E-value=11 Score=35.57 Aligned_cols=112 Identities=19% Similarity=0.260 Sum_probs=73.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC--------------------CcccCC--ccccccc--chhHHHH
Q 019052 13 MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS--------------------GVRAGF--GGYSYLY--EPLWWVG 68 (347)
Q Consensus 13 ~~s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~--------------------~~~~~~--~~~~~l~--~p~W~~G 68 (347)
......+|+++.++++++.+++-+...|-.++.+.+ ..+++. .....+. ++.-|.=
T Consensus 108 ~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~ 187 (244)
T PF04142_consen 108 SNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIV 187 (244)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHH
Confidence 345678999999999999999999888877664310 000000 0011222 1222222
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHH
Q 019052 69 MITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCIL 124 (347)
Q Consensus 69 ~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~l 124 (347)
+++..+|-+.-...+.+++-.+=.=-.+++++.+.+++..+++.+++..-.+|+.+
T Consensus 188 i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 188 IFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 33345555666666777776666666788999999999999999999887777654
No 79
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=82.79 E-value=1.5 Score=36.20 Aligned_cols=47 Identities=26% Similarity=0.453 Sum_probs=39.3
Q ss_pred hhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCC
Q 019052 91 VTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPA 138 (347)
Q Consensus 91 v~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~ 138 (347)
-+.-|.+-++.+++-.+..-|+|.++.|++|..+|.+|+.++ .++|.
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI-~~~PR 106 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII-LFAPR 106 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe-EecCC
Confidence 345577778888999999999999999999999999998876 44553
No 80
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=81.24 E-value=11 Score=36.64 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=44.2
Q ss_pred HhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 019052 244 MALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKDLGD 310 (347)
Q Consensus 244 ~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~~~~ 310 (347)
-|+...+++++-|+- +.-.+++.+.+-.+++|..+ ..-..|+++++.|+.++....++++
T Consensus 69 ~Al~~ap~slv~Plg-~~~lv~~~~~a~~~l~e~~~------~~~~~G~~l~i~G~~liv~~~~~~~ 128 (300)
T PF05653_consen 69 VALGFAPASLVAPLG-ALSLVFNAVLARFFLGEKLT------RRDIVGCALIILGSVLIVIFAPKEE 128 (300)
T ss_pred HHHHhhhHHHHHHHH-hhhhhhHHHHhHHHhcccch------HhHHhhHHHHHhhheeeEEeCCCCC
Confidence 477778889999986 44566778888889999765 2335788888999988776555443
No 81
>PRK13499 rhamnose-proton symporter; Provisional
Probab=78.46 E-value=11 Score=37.56 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=47.7
Q ss_pred HhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHHHHHhhhcc
Q 019052 244 MALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDR-QNPTQIVTEMCGFVTILAGTFLLHK 304 (347)
Q Consensus 244 ~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~-~~~~~~~~~~lG~~l~i~GVvlLs~ 304 (347)
++.+.---+.-.|+..-.-.+.+.+.+.++|+|+.. .+..+......|++++++|+.+.++
T Consensus 92 ~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 92 LTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 445555556778888888888999999999999871 2234455588999999999999998
No 82
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=73.12 E-value=5.1 Score=33.94 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=38.2
Q ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCccc
Q 019052 268 LASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKDLGDGSSLTPSMSL 320 (347)
Q Consensus 268 ~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~~~~~~~~~~~~~~ 320 (347)
+--+.+|--..+.++|++.++++.++++++|+++|.++-...+.+-.-|..+.
T Consensus 20 LEemlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~~~~k~ 72 (125)
T PF15048_consen 20 LEEMLWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKMQPQEKQ 72 (125)
T ss_pred HHHHHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccccccccccc
Confidence 34445444445678999999999999999999999987666555555544433
No 83
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=70.99 E-value=2 Score=41.16 Aligned_cols=62 Identities=21% Similarity=0.415 Sum_probs=53.2
Q ss_pred HHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCCC
Q 019052 79 NFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAER 140 (347)
Q Consensus 79 ~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~~ 140 (347)
-.-|+.+..+.-++=+-+-+.+-.+++++++||-|-+..++.|++.|++|+++++...-+.+
T Consensus 95 vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag 156 (336)
T KOG2766|consen 95 VVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG 156 (336)
T ss_pred EeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccc
Confidence 34577788888888899999999999999999999999999999999999998877654443
No 84
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.81 E-value=4.2 Score=33.20 Aligned_cols=107 Identities=16% Similarity=0.163 Sum_probs=59.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHHHHHHHHHHHH---HHHHhhcchh
Q 019052 13 MSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIAN---FAAYAFAPAI 89 (347)
Q Consensus 13 ~~s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~---~~aL~~ap~s 89 (347)
.++.....++|-++|.++..++ -+++.+...+. .-..---.|=+.++=|.+..-.| -..++.+.+.
T Consensus 4 ~~~~~l~~vlLL~~SNvFMTFA----WYghLk~~~~p-------l~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK 72 (116)
T COG3169 4 PMSVYLYPVLLLIGSNVFMTFA----WYGHLKFTNKP-------LVIVILASWGIAFFEYLLQVPANRIGHQVYSAAQLK 72 (116)
T ss_pred CCchHHHHHHHHHhhHHHHHHH----HHHHHhccCCc-------hhHHHHHHhhHHHHHHHHhCccchhhhhhccHHHHH
Confidence 4566777788888888876655 34554422110 00000012222222222211111 1123333344
Q ss_pred hhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 90 LVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 90 lv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
..| -++++..-.++|.+++||+++...+.|.+++..|+.++
T Consensus 73 ~mQ--EVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 73 TMQ--EVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHH--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 444 24667777889999999999999999999988887643
No 85
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=69.35 E-value=1.1e+02 Score=31.47 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCccccccCCCCCCCCCCCCccc
Q 019052 282 PTQIVTEMCGFVTILAGTFLLHKTKDLGDGSSLTPSMSLRLSKHADDDDLESEGIPL 338 (347)
Q Consensus 282 ~~~~~~~~lG~~l~i~GVvlLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (347)
.|+...+.-|++.+++|++++-+-+|.|++.-+.|-..-+-.. +|+++-|.|++||
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~-~e~~~~~~~~~~l 238 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDP-LEIYEEEKENEGL 238 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCc-hhhhhhhccCCCc
Confidence 5777888899999999999998888888777776543333222 1222445566654
No 86
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=67.71 E-value=4.9 Score=38.28 Aligned_cols=62 Identities=27% Similarity=0.432 Sum_probs=50.5
Q ss_pred HhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCC
Q 019052 244 MALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKD 307 (347)
Q Consensus 244 ~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~ 307 (347)
+|.+.-..+.-.|+.+-.--+.+.+.|+++||||.. +.+...=..++++++.|+++=+..++
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t--~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTT--PTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCc--chhHHHHHHHHHHHHHhheEeeeecc
Confidence 577777777888998888888999999999999985 56666666777889999998886665
No 87
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=67.61 E-value=4.9 Score=33.17 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 96 ALSIIISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 96 ~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
++++..-.+++.+++||+++.....|-++++.++.++
T Consensus 70 vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 70 VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 3455555678999999999999999999988776543
No 88
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=66.97 E-value=98 Score=27.94 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=39.1
Q ss_pred HHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHh
Q 019052 238 QMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTF 300 (347)
Q Consensus 238 Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVv 300 (347)
|..+.+..+++.|++ ..-+......+.+.+.+..+|+|... ....+|..+++.|++
T Consensus 165 ~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~ls------~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 165 GGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDAKIS------STFYLGAILVFLATF 220 (222)
T ss_pred cCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHeeeE
Confidence 334467778888876 56666777788888889999998654 345566666666654
No 89
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=66.87 E-value=20 Score=34.08 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHH-----HhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 019052 261 MFTSLTILASVI-----MFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKDLGD 310 (347)
Q Consensus 261 ~~~~~~i~~G~i-----~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~~~~ 310 (347)
.|..++++.|-. +|++..+ .+..-.+-.+|++++++|..+.+.-|++++
T Consensus 87 iW~s~n~l~Gw~~grfGlFg~~~~-~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 87 IWGSVNCLTGWASGRFGLFGLDPQ-VPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred HHHHHHHHHHHHHhhceecccccc-ccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 455666666654 6776544 445566677888888888888877666653
No 90
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=64.01 E-value=47 Score=28.44 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHH----HhccccccchhhHHHHHhhccee
Q 019052 95 GALSIIISAALAHI----ILRERLHIFGILGCILCVVGSTT 131 (347)
Q Consensus 95 ~~~~lv~~~~la~~----~l~E~~~~~~~~G~~li~~G~~l 131 (347)
..-+++.++++-++ .-+++++.++..|..++++|+.+
T Consensus 98 ~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 98 VAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 34455566666665 45789999999999999999763
No 91
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=62.55 E-value=1.3e+02 Score=30.67 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=41.0
Q ss_pred hhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecC---C----------CCcccCHHHHHHHhcchhH
Q 019052 91 VTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP---A----------EREIESVIEVWNLATEPAF 157 (347)
Q Consensus 91 v~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~---~----------~~~~~t~~el~~~~~~~~f 157 (347)
+.-.|+++......++-++.....+..-|++....++=.+++....| + +.+..+.+|+.++++.+.|
T Consensus 143 ~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~f 222 (412)
T PF01306_consen 143 ARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNF 222 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHH
T ss_pred HHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhH
Confidence 34568888888888877777654455556654432211121111111 1 1123355688999999998
Q ss_pred HHHHHHHHH
Q 019052 158 LLYAALVIT 166 (347)
Q Consensus 158 l~y~~~~~~ 166 (347)
+.+...+..
T Consensus 223 w~~~l~v~g 231 (412)
T PF01306_consen 223 WFFVLFVIG 231 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 876554443
No 92
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=61.92 E-value=71 Score=31.08 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=41.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 019052 218 QLIYPQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCG 291 (347)
Q Consensus 218 ~~~~~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG 291 (347)
..++|..+..+.....-...|..-.=.|..+.... =..+=|-..|.++++.|.++|+|+. +..|++...++
T Consensus 65 ~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~l-eaSLGY~InPL~~VllG~lflkErl--s~~Q~iAV~lA 135 (293)
T COG2962 65 LLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVL-EASLGYFINPLVNVLLGRLFLKERL--SRLQWIAVGLA 135 (293)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchh-HHHhHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHH
Confidence 35678777776666555555543332233322211 1223344457789999999999965 56666555443
No 93
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=60.16 E-value=1.8e+02 Score=28.74 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=51.8
Q ss_pred HHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEee
Q 019052 77 IANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLH 135 (347)
Q Consensus 77 ~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~ 135 (347)
.+.=+++.+.|+++-+-.=+.+++|-++++..+==||++..-..=+.+|.+|+++.+.-
T Consensus 99 GLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K 157 (349)
T KOG1443|consen 99 GLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK 157 (349)
T ss_pred ccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec
Confidence 45667899999999999999999999999999988999888888888899998877653
No 94
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=58.87 E-value=53 Score=30.30 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=31.9
Q ss_pred HHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhh
Q 019052 240 NYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLL 302 (347)
Q Consensus 240 ~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlL 302 (347)
.+...|+++-+.....-+ +...|+...+.+..+++|.. +..++. |+++.++|++++
T Consensus 85 ~~~~~a~~~~~~~~a~~l-~~~~Pi~~~lla~~~l~Ek~--~~~~~l----~~~~~~~Gv~li 140 (256)
T TIGR00688 85 WLFIWAVNNGSSLEVSLG-YLINPLVMVALGRVFLKERI--SRFQFI----AVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHcchHHHHHHH-HHHHHHHHHHHHHHHHhcCC--CHHHHH----HHHHHHHHHHHH
Confidence 344566766554433333 34568888888888899865 344443 333334444444
No 95
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=58.43 E-value=17 Score=35.28 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhccccccchhhHHHHHhhcceeE
Q 019052 100 IISAALAHIILRERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 100 v~~~~la~~~l~E~~~~~~~~G~~li~~G~~li 132 (347)
.+++++|-.+.+.+++...|+|++++..|..+.
T Consensus 280 FvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~f 312 (330)
T KOG1583|consen 280 FVSLLFSIIYFENPFTPWHWLGAALVFFGTLLF 312 (330)
T ss_pred HHHHhheeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999998866
No 96
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=58.08 E-value=79 Score=28.97 Aligned_cols=58 Identities=26% Similarity=0.324 Sum_probs=37.0
Q ss_pred cchhHHHHHHHHHHHHHHHH---HHHhhcchhhhh--cchhHHHHHHHHH-HHHHhccccccch
Q 019052 61 YEPLWWVGMITMVVGEIANF---AAYAFAPAILVT--PLGALSIIISAAL-AHIILRERLHIFG 118 (347)
Q Consensus 61 ~~p~W~~G~~l~~~g~~~~~---~aL~~ap~slv~--Pl~~~~lv~~~~l-a~~~l~E~~~~~~ 118 (347)
+||.||=+++...+..++|+ ++-++.|.|+=- |=.++.++-..++ -+|++|+|.+.+.
T Consensus 157 qr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 157 QRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 47889999988877777774 455677777532 2233344444444 4677788877653
No 97
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=56.89 E-value=2.1e+02 Score=28.28 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecCCC
Q 019052 73 VVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAE 139 (347)
Q Consensus 73 ~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~~~ 139 (347)
.++.-++.-||.+.+.-...=-=+.=++-.++++.++-|+|.+.+|.+-..+|.+|+.++..+.+.+
T Consensus 94 ~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 94 TLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 4666788888887765443333455567788899999999999999999999999999998886555
No 98
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=56.53 E-value=57 Score=32.45 Aligned_cols=79 Identities=11% Similarity=0.232 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccC---cceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhh
Q 019052 225 WAFTLIVIVCVLTQMNYLNMALDTFN---TAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFL 301 (347)
Q Consensus 225 y~ll~~~v~~~l~Q~~~ln~aL~~~d---a~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvl 301 (347)
|++.+..-+.=..|..|...+=.+-. +...-++......+++-+.| +.++||+..+......+.+|+++++..+++
T Consensus 259 ~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG-l~lkEWKg~s~kt~~vl~~G~~vlI~s~~i 337 (344)
T PF06379_consen 259 YLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG-LILKEWKGASKKTIRVLVLGIAVLILSVVI 337 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH-HHHHHhccCCcccHHHHHHHHHHHHHHHHH
Confidence 44444444555788877766443222 24567777777777777777 568999999998889999999999998887
Q ss_pred hcc
Q 019052 302 LHK 304 (347)
Q Consensus 302 Ls~ 304 (347)
+..
T Consensus 338 vG~ 340 (344)
T PF06379_consen 338 VGY 340 (344)
T ss_pred Hhc
Confidence 754
No 99
>PRK03893 putative sialic acid transporter; Provisional
Probab=56.26 E-value=2.2e+02 Score=28.40 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=9.0
Q ss_pred CCCCCCCCCccccccc
Q 019052 327 DDDDLESEGIPLRRQE 342 (347)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (347)
.++|.++.+++.+.+|
T Consensus 480 ~~~~~~~~~~~~~~~~ 495 (496)
T PRK03893 480 GAVPFGSAKNALVKTK 495 (496)
T ss_pred cccCcccccCccccCC
Confidence 3455566666665554
No 100
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.36 E-value=4.6 Score=39.08 Aligned_cols=59 Identities=14% Similarity=0.276 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcce
Q 019052 72 MVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGST 130 (347)
Q Consensus 72 ~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~ 130 (347)
++++-..+-..|++.|++.-+-==++..+||.+++..+||+|-+..-..++.+|+.|-.
T Consensus 112 fi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 112 FILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred eeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhe
Confidence 34445667778999999988888899999999999999999999998888888888843
No 101
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=43.62 E-value=39 Score=28.65 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 019052 286 VTEMCGFVTILAGTFL 301 (347)
Q Consensus 286 ~~~~lG~~l~i~GVvl 301 (347)
.....|..+.+.|++.
T Consensus 87 ~~~i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 87 LSIIIGLLLFLVGVIY 102 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 102
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=40.83 E-value=63 Score=31.40 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 019052 233 VCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKDLGDGS 312 (347)
Q Consensus 233 ~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~~~~~~ 312 (347)
.+.++-+||-=+-+...|++++.=. .+++.++..-++++|.. +. .-++|.++.+.||+++.|.+=-=.+.
T Consensus 108 ~tgvmlmyya~~~mslaDA~vItFs----sPvft~ifaw~~LkE~~--t~----~eaL~s~itl~GVVLIvRPpFlFG~~ 177 (346)
T KOG4510|consen 108 FTGVMLMYYALMYMSLADAVVITFS----SPVFTIIFAWAFLKEPF--TK----FEALGSLITLLGVVLIVRPPFLFGDT 177 (346)
T ss_pred hhHHHHHHHHHhhcchhheEEEEec----ChHHHHHHHHHHHcCCC--cH----HHHHHHHHhhheEEEEecCCcccCCC
Confidence 3456667777677777887544211 23357788889999965 34 45688889999999999876543333
Q ss_pred CCCCCcc
Q 019052 313 SLTPSMS 319 (347)
Q Consensus 313 ~~~~~~~ 319 (347)
-.+.|+|
T Consensus 178 t~g~~~s 184 (346)
T KOG4510|consen 178 TEGEDSS 184 (346)
T ss_pred ccccccc
Confidence 3333333
No 103
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=40.48 E-value=3.6e+02 Score=26.29 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=22.8
Q ss_pred ceehhhHHHHHHHHHHHHHHHHhcccC
Q 019052 252 AVVSPIYYVMFTSLTILASVIMFKDWD 278 (347)
Q Consensus 252 ~~vvP~~~v~~~~~~i~~G~i~f~E~~ 278 (347)
-..+|-+-..|...+++++...+.+..
T Consensus 240 ~~~~P~FvlgFl~~~~l~s~~~~~~~~ 266 (305)
T PF03601_consen 240 KVSFPWFVLGFLAASLLNSLGLLPAAV 266 (305)
T ss_pred ccCcCHHHHHHHHHHHHHHHhhhHHHH
Confidence 457999999999999999998888643
No 104
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=39.54 E-value=3.2e+02 Score=25.40 Aligned_cols=18 Identities=0% Similarity=-0.223 Sum_probs=10.5
Q ss_pred hhccccCcchhHHHHHHH
Q 019052 174 HYIPQYGQTHIMVYIGVC 191 (347)
Q Consensus 174 ~~~~r~g~~~~l~y~~~~ 191 (347)
+...|.|+|+.+..+...
T Consensus 52 ~l~dr~g~r~~~~~~~~~ 69 (379)
T TIGR00881 52 SVSDRSNPRVFLPIGLIL 69 (379)
T ss_pred HHHHhhCCeehhHHHHHH
Confidence 345677777765554433
No 105
>PF14851 FAM176: FAM176 family
Probab=38.55 E-value=96 Score=27.35 Aligned_cols=7 Identities=14% Similarity=0.012 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 019052 264 SLTILAS 270 (347)
Q Consensus 264 ~~~i~~G 270 (347)
+++++.|
T Consensus 27 v~gVC~G 33 (153)
T PF14851_consen 27 VSGVCAG 33 (153)
T ss_pred HHHHHHH
Confidence 3444444
No 106
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.54 E-value=23 Score=34.91 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=55.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHH-HHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Q 019052 217 NQLIYPQTWAFTLIVIVCVLTQM-NYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTI 295 (347)
Q Consensus 217 ~~~~~~~~y~ll~~~v~~~l~Q~-~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~ 295 (347)
.-+++|.-|+=++.+ .+.+. .| .|+.-.+++.+.|+-..-.+ ++.+.+-.+.+|..+ ..=.+|++++
T Consensus 60 ~yl~~~~Ww~G~ltm---~vGei~NF--aAYaFAPasLVtPLGAlsvi-~saila~~~L~Ekl~------~~g~lGc~l~ 127 (335)
T KOG2922|consen 60 GYLKEPLWWAGMLTM---IVGEIANF--AAYAFAPASLVTPLGALSVI-ISAILASFFLKEKLN------LLGILGCVLC 127 (335)
T ss_pred chhhhHHHHHHHHHH---HHHhHhhH--HHHhhchHhhhccchhHHHH-HHHHHHHHHHHHHHH------HhhhhheeEE
Confidence 456665555433333 33332 22 46677888999999766544 445556677888655 4456899999
Q ss_pred HHHHhhhccCCCCCCCC
Q 019052 296 LAGTFLLHKTKDLGDGS 312 (347)
Q Consensus 296 i~GVvlLs~~~~~~~~~ 312 (347)
++|.+++..+.+++++.
T Consensus 128 v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 128 VVGSTTIVIHAPKEQEI 144 (335)
T ss_pred ecccEEEEEecCccccc
Confidence 99999999888776654
No 107
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=38.38 E-value=24 Score=33.54 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEEeecC
Q 019052 97 LSIIISAALAHIILRERLHIFGILGCILCVVGSTTIVLHAP 137 (347)
Q Consensus 97 ~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~~~ 137 (347)
.-=.|+.+.+-++.+.+++.++|+|+.++..+...-+.++.
T Consensus 276 TRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 276 TRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 34468999999999999999999999999999887766654
No 108
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.40 E-value=2.3e+02 Score=25.69 Aligned_cols=56 Identities=20% Similarity=0.417 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHHHHHHHH---HHhhcchhh---hhcchhHHHHHHHHHHHHHhccccccc
Q 019052 62 EPLWWVGMITMVVGEIANFA---AYAFAPAIL---VTPLGALSIIISAALAHIILRERLHIF 117 (347)
Q Consensus 62 ~p~W~~G~~l~~~g~~~~~~---aL~~ap~sl---v~Pl~~~~lv~~~~la~~~l~E~~~~~ 117 (347)
++.||-.++..++..+.++. ..++.|..+ +.|...+-+-..+...+++++.|.+.+
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555555544444444432 233345443 445555544455667788888887654
No 109
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=36.33 E-value=69 Score=24.74 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=31.6
Q ss_pred ceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHH
Q 019052 252 AVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGT 299 (347)
Q Consensus 252 ~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GV 299 (347)
..++|+.|++-.++-.+.+..-+.....-++.-+...+.++...+-|.
T Consensus 14 mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~ 61 (76)
T PF11970_consen 14 MFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGF 61 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCH
Confidence 577888888888888888887776443334444555555555555554
No 110
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=33.50 E-value=1.8e+02 Score=22.73 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=16.8
Q ss_pred cccccchhHHHHHHHHHHHHHHHH
Q 019052 57 YSYLYEPLWWVGMITMVVGEIANF 80 (347)
Q Consensus 57 ~~~l~~p~W~~G~~l~~~g~~~~~ 80 (347)
+.-+|||.||++++..++-.+.++
T Consensus 5 KvR~kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 5 KVRFKNKAFWVALISAILLLVQQV 28 (84)
T ss_pred hhcccCHHHHHHHHHHHHHHHHHH
Confidence 345799999999887655444443
No 111
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=33.12 E-value=2.7e+02 Score=27.87 Aligned_cols=121 Identities=19% Similarity=0.293 Sum_probs=76.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC-----------------------CcccCCccccccc--chhHH
Q 019052 12 GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGAS-----------------------GVRAGFGGYSYLY--EPLWW 66 (347)
Q Consensus 12 ~~~s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~-----------------------~~~~~~~~~~~l~--~p~W~ 66 (347)
....+.+.|....+.+++.-+++.+.-.|-.++.... +.+.+. ....+. +..-|
T Consensus 176 ~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~-~~gff~G~s~~vw 254 (345)
T KOG2234|consen 176 SSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAIN-EYGFFYGYSSIVW 254 (345)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccc-cCCccccccHHHH
Confidence 4456777888888888888777777666655442210 001110 111221 12223
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhcchhHHHHHHHHHHHHHhccccccchhhHHHHHhhcceeEE
Q 019052 67 VGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGILGCILCVVGSTTIV 133 (347)
Q Consensus 67 ~G~~l~~~g~~~~~~aL~~ap~slv~Pl~~~~lv~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv 133 (347)
.=++.-.+|-++-.+-..+++=.+=.=-.+++++++.+.+.++.+.++|..=.+|+.+++.-+.+-.
T Consensus 255 ~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 255 LVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred HHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 3333444555555555666665555555668999999999999999999999999999998877554
No 112
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=31.34 E-value=1.5e+02 Score=27.71 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhHHHHH
Q 019052 185 MVYIGVCSLVGSLSVM 200 (347)
Q Consensus 185 l~y~~~~gllgg~t~l 200 (347)
+....+||++||+...
T Consensus 12 ~~~illg~~iGg~~G~ 27 (248)
T PF11368_consen 12 LLLILLGGLIGGFIGF 27 (248)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445556666666544
No 113
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=31.05 E-value=3e+02 Score=22.67 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhh
Q 019052 222 PQTWAFTLIVIVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFL 301 (347)
Q Consensus 222 ~~~y~ll~~~v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvl 301 (347)
+..+..++............-...+++..|. ..-+...+..+..++.|.++|+|.. +.. -..|.++.+.|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~l-t~~v~~~~K~~~~i~~s~~~f~~~~--t~~----~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPL-TYSVLGNVKRILVILLSVIFFGEPI--TPL----QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChh-HHHHHHHHHHHHHHHHHhhhcCCcC--CHH----HHHHHHHHHHHHhe
Confidence 3444444444333344444444455555443 5666777788899999999999864 443 45677777777764
No 114
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=30.78 E-value=32 Score=26.43 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=15.4
Q ss_pred HHHHhhhccCCCCC--CCCCCCCCcc
Q 019052 296 LAGTFLLHKTKDLG--DGSSLTPSMS 319 (347)
Q Consensus 296 i~GVvlLs~~~~~~--~~~~~~~~~~ 319 (347)
+.|+..-.+.+..+ ...||.++|+
T Consensus 26 ~~~~~~~~~g~k~~~~~~ppi~asS~ 51 (71)
T PF11022_consen 26 FGGVYLATSGSKKPKKATPPINASSS 51 (71)
T ss_pred HHHheeccCCCCCCCCCCCCCCCCCH
Confidence 33455555555454 6888999887
No 115
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=29.20 E-value=4.4e+02 Score=26.45 Aligned_cols=36 Identities=17% Similarity=-0.040 Sum_probs=28.6
Q ss_pred HHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcc
Q 019052 241 YLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKD 276 (347)
Q Consensus 241 ~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E 276 (347)
++.+-++.-|+.-+.|+--+.-....+..|+.--+|
T Consensus 294 ~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~ 329 (399)
T PF00909_consen 294 WLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPE 329 (399)
T ss_dssp HHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCH
T ss_pred cccceeEeccccceEeeeeccHHHHHHHHHHHhccc
Confidence 588889999999999999888777777777766665
No 116
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=28.03 E-value=41 Score=33.08 Aligned_cols=33 Identities=33% Similarity=0.313 Sum_probs=28.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q 019052 14 SSDNIKGLILALSSSIFIGSSFIVKKKGLKKAG 46 (347)
Q Consensus 14 ~s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~ 46 (347)
.+-+++|.+.|+++.+..++=++++|+...+++
T Consensus 158 ~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~ 190 (316)
T KOG1441|consen 158 LSFNLFGFISAMISNLAFALRNILSKKLLTSKG 190 (316)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 356789999999999999999999999886543
No 117
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=26.80 E-value=92 Score=19.92 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 019052 15 SDNIKGLILALSSSIFIGSSFI 36 (347)
Q Consensus 15 s~~~iGv~lal~sa~~~a~G~~ 36 (347)
-.|.+|+.+|+.-++++++-.-
T Consensus 4 faWilG~~lA~~~~v~~a~w~E 25 (30)
T TIGR02106 4 FAWILGTLLACAFGVLNAMWLE 25 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999998888877643
No 118
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=26.21 E-value=98 Score=19.48 Aligned_cols=21 Identities=24% Similarity=0.176 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 019052 15 SDNIKGLILALSSSIFIGSSF 35 (347)
Q Consensus 15 s~~~iGv~lal~sa~~~a~G~ 35 (347)
-.|.+|+.+|..-++++++..
T Consensus 4 faWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 4 FAWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999888887653
No 119
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=25.31 E-value=3.2e+02 Score=25.28 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=39.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCcc-cCCcccc------cccchhHHHHHHHHHHHH
Q 019052 12 GMSSDNIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVR-AGFGGYS------YLYEPLWWVGMITMVVGE 76 (347)
Q Consensus 12 ~~~s~~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~~-~~~~~~~------~l~~p~W~~G~~l~~~g~ 76 (347)
+....-++|+.+.+++-++.++++.-++ ..++.+++..+ -.....+ |+-.-.+|.|+.++..+.
T Consensus 116 ~~~~~~~~g~~l~~~g~~~E~~AD~Q~~-~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~ 186 (235)
T PF06966_consen 116 PLNWLDILGIALFLIGFLLETVADQQKY-RFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS 186 (235)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence 3345568899999999888888887554 44444432111 0112334 444557788888876655
No 120
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=24.70 E-value=6.6e+02 Score=26.17 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=49.6
Q ss_pred ccchhHHHHHHHHH---HHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 019052 218 QLIYPQTWAFTLIV---IVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVT 294 (347)
Q Consensus 218 ~~~~~~~y~ll~~~---v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l 294 (347)
.+.+|..|.+..+. .++...|.+|=+. |.=+-.+..+......-+.++=.|+|..- +....-.+.=+..
T Consensus 96 gW~YW~~wv~v~~ae~tAi~~y~~~WfP~v------P~Wv~al~~~~l~~~~NL~sVk~FGE~Ef--WfAlIKV~aIi~~ 167 (462)
T COG1113 96 GWTYWFFWVLVGIAELTAIGIYLQFWFPDV------PQWVFALAAVVLLLAVNLISVKVFGELEF--WFALIKVAAIIAF 167 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 35677777766664 3445666666222 22233333444444555678889999642 3344444455567
Q ss_pred HHHHHhhhccCCCCCC
Q 019052 295 ILAGTFLLHKTKDLGD 310 (347)
Q Consensus 295 ~i~GVvlLs~~~~~~~ 310 (347)
++.|++++...-+.+.
T Consensus 168 Iv~G~~ll~~g~~~~~ 183 (462)
T COG1113 168 IVVGIVLLFGGFGGGG 183 (462)
T ss_pred HHHHHHHHhhccCCCC
Confidence 8889999987555443
No 121
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.39 E-value=87 Score=27.50 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHh----ccccccchhhHHHHHhhcceeE
Q 019052 95 GALSIIISAALAHIIL----RERLHIFGILGCILCVVGSTTI 132 (347)
Q Consensus 95 ~~~~lv~~~~la~~~l----~E~~~~~~~~G~~li~~G~~li 132 (347)
-+-+++..+++=++=+ +++++..++.|++++.+|+.++
T Consensus 103 i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 103 IAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 3444555555555544 3788899999999999995443
No 122
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=24.35 E-value=8.3e+02 Score=25.52 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 019052 284 QIVTEMCGFVTILAGTFLLHKTKDLGDGSSLTPS 317 (347)
Q Consensus 284 ~~~~~~lG~~l~i~GVvlLs~~~~~~~~~~~~~~ 317 (347)
+......|+.+++.+++.+..+-.+.++...+|+
T Consensus 373 ~~al~~a~~~lll~~~~~~~~~l~~~~~~d~~~~ 406 (524)
T PF05977_consen 373 RTALLIAGAALLLSALIALRFPLRQGEELDLDPS 406 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccCCCCcc
Confidence 3345556665555555544333333333334443
No 123
>PRK11469 hypothetical protein; Provisional
Probab=24.30 E-value=5.3e+02 Score=23.21 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=10.5
Q ss_pred hhh-HHHHHhhcceeE
Q 019052 118 GIL-GCILCVVGSTTI 132 (347)
Q Consensus 118 ~~~-G~~li~~G~~li 132 (347)
+++ |++++..|+-++
T Consensus 167 ~~lgG~iLI~iGi~il 182 (188)
T PRK11469 167 EILGGLVLIGIGVQIL 182 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 344 888898887543
No 124
>PRK14749 hypothetical protein; Provisional
Probab=23.62 E-value=1.6e+02 Score=18.82 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 019052 15 SDNIKGLILALSSSIFIGSSFI 36 (347)
Q Consensus 15 s~~~iGv~lal~sa~~~a~G~~ 36 (347)
-.|.+|+.+|..-++++++=.-
T Consensus 4 faWiLG~~lAc~f~ilna~w~E 25 (30)
T PRK14749 4 LLWFVGILLMCSLSTLVLVWLD 25 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999998888877554
No 125
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=23.23 E-value=5.4e+02 Score=23.27 Aligned_cols=43 Identities=26% Similarity=0.499 Sum_probs=25.1
Q ss_pred HHHHHHHHHHH---HHHHHHHhhc---------chhhhhcchhHHHH--HHHHHHHH
Q 019052 66 WVGMITMVVGE---IANFAAYAFA---------PAILVTPLGALSII--ISAALAHI 108 (347)
Q Consensus 66 ~~G~~l~~~g~---~~~~~aL~~a---------p~slv~Pl~~~~lv--~~~~la~~ 108 (347)
.+|+++.++|. ++..++-+.. |-..++|+-.+.+. .|.+++|+
T Consensus 112 l~Gmllt~lG~~a~vG~L~ak~lsqp~g~~~~~~~~~i~~lDvf~vqAn~n~i~AHf 168 (183)
T PF12263_consen 112 LVGMLLTLLGAQATVGTLVAKALSQPQGAAIYNPSQPIRALDVFVVQANTNTILAHF 168 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 45666655544 3444443333 55667777777665 45677776
No 126
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=22.15 E-value=1.7e+02 Score=22.38 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019052 280 QNPTQIVTEMCGFVTILAGTFLLHKTKDLG 309 (347)
Q Consensus 280 ~~~~~~~~~~lG~~l~i~GVvlLs~~~~~~ 309 (347)
++-.+..++..|+++++.|-++.+..++.+
T Consensus 3 fgk~Nyill~iG~~vIilGfilMsg~~s~d 32 (69)
T PF11297_consen 3 FGKKNYILLAIGIAVIILGFILMSGGGSDD 32 (69)
T ss_pred CchHHHHHHHHHHHHHHHHHHheeCCCCCC
Confidence 345678999999999999999999877665
No 127
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=21.97 E-value=67 Score=22.51 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCCcccccccccC
Q 019052 324 KHADDDDLESEGIPLRRQESLR 345 (347)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~ 345 (347)
+.+..-|..+.|+|+|+.++.|
T Consensus 5 ~y~gigp~De~giP~~~vd~~k 26 (47)
T PF02208_consen 5 HYEGIGPVDESGIPLSNVDRPK 26 (47)
T ss_pred cCCCcCccccCCCccccccchh
Confidence 4455668888999998886543
No 128
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=21.27 E-value=1.6e+02 Score=29.81 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=25.3
Q ss_pred ehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccC
Q 019052 254 VSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKT 305 (347)
Q Consensus 254 vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~ 305 (347)
..-+......+.+++.+.++ + ......++...+..|++.++.+++.+-.+
T Consensus 384 ~~g~~~~~g~lg~~i~~~l~-~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 384 ISGLTGAGGNVGAVLTQLLF-F-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhhhccccHHHHHHHHHH-H-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 33344444455666666553 3 11222345566666666555555554443
No 129
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.90 E-value=3.3e+02 Score=23.31 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=25.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHhh
Q 019052 14 SSDNIKGLILALSSSIFIGSSFIVKKKG 41 (347)
Q Consensus 14 ~s~~~iGv~lal~sa~~~a~G~~lqk~~ 41 (347)
.-+|..++.+.+++.+...+|...+|+-
T Consensus 28 ~~p~~~~~~l~~la~~~~~~a~~vr~~~ 55 (138)
T PF11377_consen 28 PIPWTAGVTLLVLAAVELWLAWQVRRRI 55 (138)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999987
No 130
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=20.68 E-value=9.1e+02 Score=24.65 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcccCc---ceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 019052 235 VLTQMNYLNMALDTFNT---AVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTKDLGDG 311 (347)
Q Consensus 235 ~l~Q~~~ln~aL~~~da---~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~~~~~~ 311 (347)
-..|..|+.-.-...|+ ..++-+.+++..+.-+++++++=.-.+++++..+.-..-+..++.....+++--+.+++.
T Consensus 104 ~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~ 183 (403)
T PF03209_consen 104 HASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRR 183 (403)
T ss_pred hHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 45567777666665554 567777777766555554444333345677777766666666665556666655555444
Q ss_pred CC
Q 019052 312 SS 313 (347)
Q Consensus 312 ~~ 313 (347)
..
T Consensus 184 ~~ 185 (403)
T PF03209_consen 184 SR 185 (403)
T ss_pred cc
Confidence 33
No 131
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=20.61 E-value=7.8e+02 Score=23.82 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHHHHHHHHHHHHH
Q 019052 17 NIKGLILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANF 80 (347)
Q Consensus 17 ~~iGv~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~ 80 (347)
....+...+++....-++....|++.++..+.+.+-+ ....-.-.-..|..+.++|.+..+
T Consensus 45 ~~~~i~~~ii~lvl~iia~~~lr~GF~~L~~~~~~~~---iG~tG~~Lilig~il~iig~i~~i 105 (285)
T PF06157_consen 45 LIVAIISLIIGLVLGIIAFYRLRRGFRILSSYDRDVG---IGKTGATLILIGYILIIIGAILAI 105 (285)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---chhhhhHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777788788888876543221111 122222334566666666665444
No 132
>PRK10666 ammonium transporter; Provisional
Probab=20.06 E-value=9.6e+02 Score=24.63 Aligned_cols=35 Identities=17% Similarity=-0.001 Sum_probs=26.4
Q ss_pred HHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHH
Q 019052 239 MNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIM 273 (347)
Q Consensus 239 ~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~ 273 (347)
..++.+-++.-|+.-+.|+=-+.-....+..|+.-
T Consensus 321 ~~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa 355 (428)
T PRK10666 321 VTMLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFA 355 (428)
T ss_pred HHHHHhcCCCCCCcCccHhhhHhHHHHHHHHHHhh
Confidence 35677678888999999998887666666666554
Done!