Query 019052
Match_columns 347
No_of_seqs 144 out of 725
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 10:09:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.0 1.6E-09 5.5E-14 88.6 10.0 99 22-135 5-104 (110)
2 2i68_A Protein EMRE; transmemb 98.9 1.8E-09 6.1E-14 91.8 5.2 99 22-135 5-104 (137)
3 2i68_A Protein EMRE; transmemb 97.6 0.00015 5E-09 61.4 7.9 69 232-306 37-105 (137)
4 3b5d_A Multidrug transporter E 97.6 0.0012 4.2E-08 53.3 12.7 68 233-306 38-105 (110)
5 3o7q_A L-fucose-proton symport 31.0 3E+02 0.01 24.9 12.5 17 174-190 83-99 (438)
6 1pw4_A Glycerol-3-phosphate tr 26.2 3.2E+02 0.011 24.8 9.6 17 174-190 84-100 (451)
7 1lv4_A Catestatin, chromograni 13.8 1.2E+02 0.0041 17.7 2.1 23 319-341 2-24 (26)
8 3o7q_A L-fucose-proton symport 13.4 7E+02 0.024 22.3 14.8 21 56-76 251-271 (438)
9 2zxe_G FXYD10, phospholemman-l 11.3 1.6E+02 0.0055 21.7 2.7 25 282-306 18-42 (74)
10 3s8f_B Cytochrome C oxidase su 10.4 2.5E+02 0.0086 23.6 4.1 57 284-340 17-73 (168)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.00 E-value=1.6e-09 Score=88.57 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcc-hhHHHH
Q 019052 22 ILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSII 100 (347)
Q Consensus 22 ~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~aL~~ap~slv~Pl-~~~~lv 100 (347)
++-+++.++.+.|+.+.|++.. ..+.+.++.+..++.+++.+...++...|++.+.|+ .+++.+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~~---------------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v 69 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhccC---------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHH
Confidence 4566788899999999998621 112455678888899999999999999999999999 899999
Q ss_pred HHHHHHHHHhccccccchhhHHHHHhhcceeEEee
Q 019052 101 ISAALAHIILRERLHIFGILGCILCVVGSTTIVLH 135 (347)
Q Consensus 101 ~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~ 135 (347)
++.+++.+++||+++..+++|+.+++.|++++...
T Consensus 70 ~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999977543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.86 E-value=1.8e-09 Score=91.81 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhccCCcccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcc-hhHHHH
Q 019052 22 ILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSII 100 (347)
Q Consensus 22 ~lal~sa~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~aL~~ap~slv~Pl-~~~~lv 100 (347)
++-+++.++.+.|+.+.|++.. ..+.+.++.|++++++++.++..++...|++.+.|+ .+++.+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~g---------------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 4556778899999999998621 112355678899999999999999999999999999 899999
Q ss_pred HHHHHHHHHhccccccchhhHHHHHhhcceeEEee
Q 019052 101 ISAALAHIILRERLHIFGILGCILCVVGSTTIVLH 135 (347)
Q Consensus 101 ~~~~la~~~l~E~~~~~~~~G~~li~~G~~liv~~ 135 (347)
++.+++.+++||+++..+++|+++|++|++++...
T Consensus 70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999987543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.62 E-value=0.00015 Score=61.36 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCC
Q 019052 232 IVCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTK 306 (347)
Q Consensus 232 v~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~ 306 (347)
+.+...-.+++++++++.|.+..+|+....-++.+.+.|.++|+|..+ ....+|++++++||+++.+.+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls------~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD------LPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHHHHHhcCC
Confidence 334444567789999999999999997788899999999999999764 334688899999999998654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.59 E-value=0.0012 Score=53.30 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCC
Q 019052 233 VCVLTQMNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFLLHKTK 306 (347)
Q Consensus 233 ~~~l~Q~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlLs~~~ 306 (347)
.+...-.+++++++++.|.+..+|+....-++...+.|.++|+|..+ ....+|+.+++.||+++...+
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s------~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD------LPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHHHHHhcCC
Confidence 33344456788899999999999998888899999999999999764 345788999999999998754
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=31.03 E-value=3e+02 Score=24.90 Aligned_cols=17 Identities=0% Similarity=-0.201 Sum_probs=9.5
Q ss_pred hhccccCcchhHHHHHH
Q 019052 174 HYIPQYGQTHIMVYIGV 190 (347)
Q Consensus 174 ~~~~r~g~~~~l~y~~~ 190 (347)
....|.|+|+.+..+.+
T Consensus 83 ~l~dr~g~r~~l~~~~~ 99 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLF 99 (438)
T ss_dssp HHHHHSCHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHH
Confidence 34566677766554443
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=26.24 E-value=3.2e+02 Score=24.79 Aligned_cols=17 Identities=0% Similarity=-0.236 Sum_probs=9.2
Q ss_pred hhccccCcchhHHHHHH
Q 019052 174 HYIPQYGQTHIMVYIGV 190 (347)
Q Consensus 174 ~~~~r~g~~~~l~y~~~ 190 (347)
....|+|+|+.+..+.+
T Consensus 84 ~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 84 SVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHSCHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHH
Confidence 34556677665544433
No 7
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=13.77 E-value=1.2e+02 Score=17.67 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=14.2
Q ss_pred cccccCCCCCCCCCCCCcccccc
Q 019052 319 SLRLSKHADDDDLESEGIPLRRQ 341 (347)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~ 341 (347)
|..++--+..-||.+.++-+||.
T Consensus 2 SMKlsFRar~Y~Fr~Pg~~~rrg 24 (26)
T 1lv4_A 2 SMKLSFRARAYGFRGPGPQLXXX 24 (26)
T ss_dssp CSCSCSCCCSSSSCSSCTTC---
T ss_pred CceEeeeeeecccCCCccccccc
Confidence 44455555667899999888874
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=13.36 E-value=7e+02 Score=22.30 Aligned_cols=21 Identities=5% Similarity=-0.097 Sum_probs=13.1
Q ss_pred ccccccchhHHHHHHHHHHHH
Q 019052 56 GYSYLYEPLWWVGMITMVVGE 76 (347)
Q Consensus 56 ~~~~l~~p~W~~G~~l~~~g~ 76 (347)
.++.+|+|.++..........
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T 3o7q_A 251 LSRLARIRHWRWAVLAQFCYV 271 (438)
T ss_dssp HHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHH
Confidence 346678888777666654433
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.28 E-value=1.6e+02 Score=21.70 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCC
Q 019052 282 PTQIVTEMCGFVTILAGTFLLHKTK 306 (347)
Q Consensus 282 ~~~~~~~~lG~~l~i~GVvlLs~~~ 306 (347)
..+...++++.++.+.|+.++-.++
T Consensus 18 tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HheeccchhHHHHHHHHHHHHHcCc
Confidence 3567888899999999998887544
No 10
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=10.39 E-value=2.5e+02 Score=23.64 Aligned_cols=57 Identities=0% Similarity=-0.087 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccc
Q 019052 284 QIVTEMCGFVTILAGTFLLHKTKDLGDGSSLTPSMSLRLSKHADDDDLESEGIPLRR 340 (347)
Q Consensus 284 ~~~~~~lG~~l~i~GVvlLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (347)
.|+.+.+++++++.+++.-+.-.....-.+-+...--.-.++.+..||...|.+.++
T Consensus 17 ~w~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~idp~~~~~~~~f~~pg~a~~~ 73 (168)
T 3s8f_B 17 GWLAFSLAMLFVFIALIAYTLATHTAGVIPAGKLERVDPTTVRQEGPWADPAQAVVQ 73 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSGGGGGSCCCSCCBCCTTTTTTSSTTSCGGGCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCcCCCccCccChhhhccccccCCCCccccc
Confidence 456666666666666655543331111111111111112455666777777766653
Done!