Query 019052
Match_columns 347
No_of_seqs 144 out of 725
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 10:09:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019052.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019052hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 62.6 24 0.0017 30.1 10.6 16 57-72 16-31 (447)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 19.4 2.7E+02 0.02 24.2 12.1 59 239-297 297-362 (383)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 12.4 1.1E+02 0.0079 17.8 3.3 24 220-243 14-37 (37)
4 d1op4a_ b.1.6.1 (A:) N-cadheri 11.4 1E+02 0.0075 22.5 4.0 31 310-342 105-135 (136)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 9.3 1.5E+02 0.011 16.9 3.1 11 61-71 1-11 (34)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 8.4 1.4E+02 0.01 20.7 3.5 28 272-302 55-82 (103)
7 d2p7tc1 f.14.1.1 (C:86-119) Po 6.7 1.4E+02 0.0098 16.8 2.0 25 88-112 9-33 (34)
8 d1e32a3 d.31.1.1 (A:107-200) M 5.5 1.4E+02 0.01 21.1 2.0 21 325-345 70-90 (94)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 4.0 5.4E+02 0.04 20.5 5.4 20 288-307 187-206 (447)
10 d1pv7a_ f.38.1.2 (A:) Lactose 3.6 4.7E+02 0.034 20.2 4.5 10 110-119 66-75 (417)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=62.64 E-value=24 Score=30.11 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=9.6
Q ss_pred cccccchhHHHHHHHH
Q 019052 57 YSYLYEPLWWVGMITM 72 (347)
Q Consensus 57 ~~~l~~p~W~~G~~l~ 72 (347)
.+..|+.+|.+-..++
T Consensus 16 ~~~~~~~~w~i~~~~~ 31 (447)
T d1pw4a_ 16 DPTYRRLRWQIFLGIF 31 (447)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHH
Confidence 3456677787654443
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=19.43 E-value=2.7e+02 Score=24.19 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=34.8
Q ss_pred HHHHHHhhcccCcceehhhHHHHHHHHHHHHHHHHhccc-------CCCChHHHHHHHHHHHHHHH
Q 019052 239 MNYLNMALDTFNTAVVSPIYYVMFTSLTILASVIMFKDW-------DRQNPTQIVTEMCGFVTILA 297 (347)
Q Consensus 239 ~~~ln~aL~~~da~~vvP~~~v~~~~~~i~~G~i~f~E~-------~~~~~~~~~~~~lG~~l~i~ 297 (347)
..++.+-++.-|+.-+.|+=-+.-....+..|+.-=+|. ......|......|+++++.
T Consensus 297 ~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~~~g~~~~~~~~~~~ql~~Ql~g~~v~~~ 362 (383)
T d1u7ga_ 297 VTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIV 362 (383)
T ss_dssp HHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccceEeehhhhHHHHHHHHHHhcCccccccccccccchHHHHHHHHHHHHHHHH
Confidence 345555688889999999977776666666665421211 11123456666666654443
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.42 E-value=1.1e+02 Score=17.80 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 019052 220 IYPQTWAFTLIVIVCVLTQMNYLN 243 (347)
Q Consensus 220 ~~~~~y~ll~~~v~~~l~Q~~~ln 243 (347)
+.-..|.++++.+.+.++-.||+|
T Consensus 14 rtsLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcC
Confidence 445566777777888888888876
No 4
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.42 E-value=1e+02 Score=22.53 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=19.5
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCccccccc
Q 019052 310 DGSSLTPSMSLRLSKHADDDDLESEGIPLRRQE 342 (347)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (347)
+..|.-...+..-+-.|++...++.+ |||||
T Consensus 105 d~~p~~~~~~~~~i~~P~~~~~~~~~--l~Rqk 135 (136)
T d1op4a_ 105 TEEPMKEPHEIEEIVFPRQLAKHSGA--LQRQK 135 (136)
T ss_dssp CCCCSSCCCCSCCCSSCCCCCCCCSC--CCCSC
T ss_pred CCCCcccCCCCceEEccCcCCCCCCc--ceecC
Confidence 33344334444566678877777766 78987
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.33 E-value=1.5e+02 Score=16.95 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=8.4
Q ss_pred cchhHHHHHHH
Q 019052 61 YEPLWWVGMIT 71 (347)
Q Consensus 61 ~~p~W~~G~~l 71 (347)
|-|+|++|.+.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 45899998865
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.43 E-value=1.4e+02 Score=20.66 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=14.0
Q ss_pred HHhcccCCCChHHHHHHHHHHHHHHHHHhhh
Q 019052 272 IMFKDWDRQNPTQIVTEMCGFVTILAGTFLL 302 (347)
Q Consensus 272 i~f~E~~~~~~~~~~~~~lG~~l~i~GVvlL 302 (347)
+=|+|..+.+.. .-+++++.++.|+.+.
T Consensus 55 vGYGDi~P~t~~---gr~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 55 VGYGDLYPVTLW---GRCVAVVVMVAGITSF 82 (103)
T ss_dssp CCCSSSCCCSHH---HHHHHHHHHHHHHHHH
T ss_pred cccCccccCChh---HHHHHHHHHHHHHHHH
Confidence 446776655543 3344444455555443
No 7
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=6.69 E-value=1.4e+02 Score=16.76 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=16.0
Q ss_pred hhhhhcchhHHHHHHHHHHHHHhcc
Q 019052 88 AILVTPLGALSIIISAALAHIILRE 112 (347)
Q Consensus 88 ~slv~Pl~~~~lv~~~~la~~~l~E 112 (347)
..+|+.+.+.+++++.+-.++.=+|
T Consensus 9 vvmvagits~glv~aa~atwfvgre 33 (34)
T d2p7tc1 9 VVMVAGITSFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccchhhhHHHHHHHHhhccc
Confidence 3456677778888877755554333
No 8
>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2, P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.50 E-value=1.4e+02 Score=21.14 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCcccccccccC
Q 019052 325 HADDDDLESEGIPLRRQESLR 345 (347)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~ 345 (347)
..++.-...||+|++|.++.+
T Consensus 70 V~~~T~I~~eGepi~Red~e~ 90 (94)
T d1e32a3 70 VAPDTVIHCEGEPIKREDEEE 90 (94)
T ss_dssp ECTTCCCBCCSCCBCCCTTSC
T ss_pred EcCCCEEEeCCcccchhhhhh
Confidence 456666778899999987655
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.01 E-value=5.4e+02 Score=20.54 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhhccCCC
Q 019052 288 EMCGFVTILAGTFLLHKTKD 307 (347)
Q Consensus 288 ~~lG~~l~i~GVvlLs~~~~ 307 (347)
...+....+.+++.+-..++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhhHHHHHHHHHHhccc
Confidence 33333333334443333333
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.65 E-value=4.7e+02 Score=20.21 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=6.1
Q ss_pred hccccccchh
Q 019052 110 LRERLHIFGI 119 (347)
Q Consensus 110 l~E~~~~~~~ 119 (347)
+-+|+.+|+.
T Consensus 66 l~Dr~grr~~ 75 (417)
T d1pv7a_ 66 LSDKLGLRKY 75 (417)
T ss_dssp HHHHHTTCTH
T ss_pred HHHHhCchHH
Confidence 3566777763
Done!