BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019053
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 64.7 bits (156), Expect = 7e-11, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI 172
C VCL E ++ + R LP C H FH +C+D+WL S++ CPLCR ++
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 110 IPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169
+P+++F CVVC+ +F+ + +LRVLP C+H FH C+D WL++N CP+CR
Sbjct: 9 LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
Query: 170 T 170
Sbjct: 68 A 68
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 119 GEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169
G++M C +C +E+ + D+ LP C H FH C+ IWLQ + CP+CR
Sbjct: 38 GQEMC---CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI 172
C VCL +F+ +D L + P C HAFH C+ WL+ CPLC +
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174
C VC ++ + +R LP C+H FH CI WL+ + +CP+CR S++G
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174
C +CL+ +E + +R LP C H FH C+D WL +N CP+CR I
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176
C++C F E V NC+H+F CI+ W++ CP+CR I T
Sbjct: 56 CIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176
C++C F E V NC+H+F CI+ W++ CP+CR I T
Sbjct: 56 CIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176
C++C F E V NC+H+F CI+ W++ CP+CR I T
Sbjct: 67 CIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169
C+ C E +++D + V C+H+FH C+ +W++ N CPLC+
Sbjct: 28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175
C +C++ D+ +LP C+H+F CID W + NCP+CR ++G
Sbjct: 18 CCICMD--GRADL--ILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 126 GCVVCLNEFQEQDML-RVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174
GC +CL + ++ VLP C H H C + L+ CPLC SG
Sbjct: 7 GCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 35.8 bits (81), Expect = 0.032, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 146 CSHAFHLDCIDIWLQSNANCPL 167
C+HAFH CI WL++ CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 146 CSHAFHLDCIDIWLQSNANCPL 167
C+HAFH CI WL++ CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.8 bits (81), Expect = 0.035, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 146 CSHAFHLDCIDIWLQSNANCPL 167
C+HAFH CI WL++ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 35.8 bits (81), Expect = 0.037, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 146 CSHAFHLDCIDIWLQSNANCPL 167
C+HAFH CI WL++ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 35.8 bits (81), Expect = 0.038, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 146 CSHAFHLDCIDIWLQSNANCPL 167
C+HAFH CI WL++ CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176
C +CL + M LP C HAF CI W++ N CPLC+ +
Sbjct: 8 CPICLEDPSNYSM--ALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.0 bits (79), Expect = 0.063, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 146 CSHAFHLDCIDIWLQSNANCPL 167
C+HAFH CI WL++ CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 34.3 bits (77), Expect = 0.098, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 123 SIYGCVVCLNEFQE---QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYP 179
++ C +C++ + E L V C H F C+ L++ CP CR I+ +P
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 61
Query: 180 I 180
I
Sbjct: 62 I 62
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 127 CVVCLNEFQE---QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPI 180
C +C++ + E L V C H F C+ L++ CP CR I+ +PI
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 120 EDMSIYGCVVCLNEFQEQDML-RVLPNCSHAFHLDCIDIWLQSNANCPLCRTS 171
E++S C +CL + ++ VLP C H H C + L+ CPLC S
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCMHS 52
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 146 CSHAFHLDCIDIWLQSNANCPL 167
C+HAFH CI WL++ CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN------ANCPLCR 169
C +CL +E V +C+H+F CI + +SN NCP+CR
Sbjct: 22 CPICLELLKEP----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 110 IPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPN---CSHAFHLDCIDIWLQS----N 162
+ T ++KR + + GC+ L+E +E +LR N ++ +C +WL N
Sbjct: 151 VATKEWKRNDKIELLVGCIAELSEIEENXLLRHGENDFSVXYSTRKNCAQLWLGPAAFIN 210
Query: 163 ANC-PLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSESLMGGDDDF 207
+C P C+ +G + + P + S + + G +++F
Sbjct: 211 HDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNEF 256
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISGTTRYPID 181
C +C E D + C H C+ W +S+ CP CR I GT +D
Sbjct: 341 CKIC----AENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEPIIVD 392
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.0 bits (71), Expect = 0.56, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN-CPLCRTSISGTTRYPID 181
C +C E D + C H C+ W +S+ CP CR I GT +D
Sbjct: 29 CKIC----AENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEPIIVD 80
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 31.2 bits (69), Expect = 0.94, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA---NCPLCRTSI 172
C +CL+ Q+ V +C H F L CI +++ CPLC+TS+
Sbjct: 23 CPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISGTTRYPID 181
C +C E D + C H C+ W +S CP CR I GT +D
Sbjct: 337 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 388
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISGTTRYPID 181
C +C E D + C H C+ W +S CP CR I GT +D
Sbjct: 337 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 388
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISGTTRYPID 181
C +C E D + C H C+ W +S CP CR I GT +D
Sbjct: 335 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISGTTRYPID 181
C +C E D + C H C+ W +S CP CR I GT +D
Sbjct: 335 CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL-QSNANCPLCRTSISGTTRYPIDQ 182
++ C +C + ++ R+ P+CS CI WL + A CP CR + + +
Sbjct: 22 VFRCFICXEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ------LRE 72
Query: 183 IIAPRPSPQGSQQF 196
++ R + + +QQ
Sbjct: 73 LVNCRWAEEVTQQL 86
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 143 LPNCSHAFHLDCIDIWLQSNAN------CPLCRT 170
L CSHAFHL C+ + + N N CP C+T
Sbjct: 58 LTKCSHAFHLLCL-LAMYCNGNKDGSLQCPSCKT 90
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN---CPLC 168
+ C +C+ F E+ + L +C H C++ L S+ N CP C
Sbjct: 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 127 CVVCLNEFQE---QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQI 183
C +C++ + E L V C H F C+ L++ CP CR I+ +PI
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69
Query: 184 IAPRPSPQGSQQFSESLMGG 203
P +SE + G
Sbjct: 70 SGTVSCPICMDGYSEIVQNG 89
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 127 CVVCLNEFQE---QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPI 180
C +C++ + E L V C H F C+ L++ CP CR I+ +PI
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 127 CVVCLNEFQE---QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
C +C++ + E L V C H F C+ L++ CP CR I+
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 146 CSHAFHLDCIDIWLQSNA-NCPLCRTSISGTTRYPID 181
C H C+ W +S CP CR I GT +D
Sbjct: 45 CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 81
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175
CV+C F + + C H+F CI +L+++ CP+C + T
Sbjct: 14 CVLCGGYFIDAT---TIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 59
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 146 CSHAFHLDCIDIWLQSNA-NCPLCRTSISGTTRYPID 181
C H C+ W +S CP CR I GT +D
Sbjct: 42 CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 78
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 108 RDIPTFQFKREGEDMSIYGCVVCL--NEFQEQDMLRVLPNCSH 148
+DI F+ K G + + G + C +EF Q+M+ LP CSH
Sbjct: 51 QDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSH 93
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 108 RDIPTFQFKREGEDMSIYGCVVCL--NEFQEQDMLRVLPNCSH 148
+DI F+ K G + + G + C +EF Q+M+ LP CSH
Sbjct: 51 QDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSH 93
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175
CV+C F + + C H+F CI +L+++ CP+C + T
Sbjct: 18 CVLCGGYFIDAT---TIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175
CV+C F + + C H+F CI +L+++ CP+C + T
Sbjct: 18 CVLCGGYFIDAT---TIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
C +C F ++ ++P CSH + CI +L CP C +++
Sbjct: 25 CGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68
>pdb|2VPE|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPE|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPG|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 63
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 122 MSIYGCVVCLNEFQ-EQDMLRVLPNCSHAFHLDC 154
M++Y C +C NE +QD + +C FH C
Sbjct: 3 MAVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,992,793
Number of Sequences: 62578
Number of extensions: 389859
Number of successful extensions: 768
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 53
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)