Query 019053
Match_columns 347
No_of_seqs 308 out of 1879
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 1E-19 2.2E-24 176.9 12.4 81 100-181 205-286 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 9.2E-15 2E-19 101.9 2.6 44 125-169 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.3 1.6E-12 3.4E-17 121.7 4.6 76 99-174 147-228 (238)
4 COG5540 RING-finger-containing 99.2 3.1E-12 6.7E-17 121.3 3.4 50 124-174 323-373 (374)
5 PF12678 zf-rbx1: RING-H2 zinc 99.2 5.1E-12 1.1E-16 97.8 4.0 45 124-169 19-73 (73)
6 COG5243 HRD1 HRD ubiquitin lig 99.2 1.1E-11 2.4E-16 120.3 6.4 65 108-175 273-347 (491)
7 cd00162 RING RING-finger (Real 98.9 1.2E-09 2.6E-14 74.3 3.6 44 126-172 1-45 (45)
8 KOG0823 Predicted E3 ubiquitin 98.9 7.4E-10 1.6E-14 102.1 3.2 56 121-180 44-102 (230)
9 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.6E-09 3.5E-14 77.4 3.6 46 124-173 2-48 (50)
10 PLN03208 E3 ubiquitin-protein 98.9 1.3E-09 2.8E-14 98.6 3.5 51 123-177 17-83 (193)
11 KOG0317 Predicted E3 ubiquitin 98.8 1.6E-09 3.5E-14 102.6 2.7 50 124-177 239-288 (293)
12 PF13923 zf-C3HC4_2: Zinc fing 98.8 3E-09 6.6E-14 72.2 3.2 39 127-168 1-39 (39)
13 PF12861 zf-Apc11: Anaphase-pr 98.8 3.4E-09 7.3E-14 83.9 3.3 50 124-173 21-82 (85)
14 PHA02926 zinc finger-like prot 98.8 2.9E-09 6.2E-14 97.8 2.3 55 121-175 167-232 (242)
15 KOG0802 E3 ubiquitin ligase [P 98.7 3.6E-09 7.8E-14 110.3 1.4 51 123-174 290-342 (543)
16 KOG0320 Predicted E3 ubiquitin 98.6 1.6E-08 3.4E-13 90.0 3.1 51 122-174 129-179 (187)
17 PF14634 zf-RING_5: zinc-RING 98.6 2.5E-08 5.3E-13 69.6 3.1 44 126-170 1-44 (44)
18 COG5194 APC11 Component of SCF 98.6 2E-08 4.4E-13 78.0 2.5 51 125-175 21-83 (88)
19 PF00097 zf-C3HC4: Zinc finger 98.6 3E-08 6.6E-13 67.6 2.7 39 127-168 1-41 (41)
20 smart00184 RING Ring finger. E 98.6 4.4E-08 9.5E-13 64.2 3.2 38 127-168 1-39 (39)
21 PF15227 zf-C3HC4_4: zinc fing 98.5 9E-08 2E-12 66.3 3.1 38 127-168 1-42 (42)
22 smart00504 Ubox Modified RING 98.5 1.1E-07 2.5E-12 70.3 3.7 47 125-175 2-48 (63)
23 TIGR00599 rad18 DNA repair pro 98.4 2.3E-07 5E-12 92.9 3.5 49 123-175 25-73 (397)
24 KOG1493 Anaphase-promoting com 98.3 8.5E-08 1.8E-12 74.0 -0.0 49 125-173 21-81 (84)
25 KOG1734 Predicted RING-contain 98.3 2.4E-07 5.2E-12 87.2 1.1 53 122-175 222-283 (328)
26 COG5219 Uncharacterized conser 98.3 1.6E-07 3.4E-12 100.3 -0.5 54 120-173 1465-1523(1525)
27 KOG0828 Predicted E3 ubiquitin 98.2 6E-07 1.3E-11 90.4 2.0 50 124-174 571-635 (636)
28 smart00744 RINGv The RING-vari 98.2 1.2E-06 2.7E-11 62.6 3.0 42 126-169 1-49 (49)
29 COG5574 PEX10 RING-finger-cont 98.2 8.3E-07 1.8E-11 83.5 2.4 50 124-177 215-266 (271)
30 KOG2930 SCF ubiquitin ligase, 98.1 1.9E-06 4.2E-11 70.2 2.4 50 124-173 46-108 (114)
31 PF13445 zf-RING_UBOX: RING-ty 98.0 5.6E-06 1.2E-10 57.7 2.8 34 127-162 1-35 (43)
32 KOG4265 Predicted E3 ubiquitin 98.0 4.6E-06 1E-10 81.5 3.1 48 124-175 290-338 (349)
33 PF04564 U-box: U-box domain; 97.9 6.5E-06 1.4E-10 63.5 2.4 48 124-175 4-52 (73)
34 KOG2164 Predicted E3 ubiquitin 97.9 6.4E-06 1.4E-10 83.7 2.4 49 124-176 186-239 (513)
35 KOG0287 Postreplication repair 97.9 5.4E-06 1.2E-10 80.4 1.6 49 123-175 22-70 (442)
36 TIGR00570 cdk7 CDK-activating 97.8 1.2E-05 2.6E-10 77.9 3.7 52 124-176 3-57 (309)
37 KOG0827 Predicted E3 ubiquitin 97.8 8.8E-06 1.9E-10 80.2 2.1 46 125-170 5-53 (465)
38 KOG2177 Predicted E3 ubiquitin 97.8 8.1E-06 1.7E-10 75.4 1.7 44 123-170 12-55 (386)
39 PF11793 FANCL_C: FANCL C-term 97.8 4.7E-06 1E-10 64.0 -0.1 49 125-173 3-66 (70)
40 COG5432 RAD18 RING-finger-cont 97.8 1.3E-05 2.7E-10 76.5 2.5 49 122-174 23-71 (391)
41 KOG0804 Cytoplasmic Zn-finger 97.7 1E-05 2.3E-10 81.0 1.3 47 124-173 175-222 (493)
42 KOG1039 Predicted E3 ubiquitin 97.6 3.7E-05 8E-10 75.9 2.3 52 123-174 160-222 (344)
43 KOG0825 PHD Zn-finger protein 97.5 2.1E-05 4.5E-10 83.2 -0.1 52 124-176 123-174 (1134)
44 KOG4172 Predicted E3 ubiquitin 97.5 2.5E-05 5.5E-10 56.8 0.2 45 125-173 8-54 (62)
45 KOG1645 RING-finger-containing 97.5 6.7E-05 1.5E-09 74.5 3.0 49 124-172 4-55 (463)
46 KOG0311 Predicted E3 ubiquitin 97.3 5.6E-05 1.2E-09 73.9 -0.4 51 123-176 42-93 (381)
47 KOG4445 Uncharacterized conser 97.2 0.00011 2.3E-09 70.5 1.0 52 124-176 115-189 (368)
48 PF14835 zf-RING_6: zf-RING of 97.1 9.3E-05 2E-09 55.7 -0.2 45 125-174 8-52 (65)
49 KOG1785 Tyrosine kinase negati 97.1 0.00033 7.1E-09 69.6 3.4 51 124-178 369-421 (563)
50 KOG0824 Predicted E3 ubiquitin 97.0 0.0003 6.6E-09 67.6 1.7 48 124-175 7-55 (324)
51 KOG4159 Predicted E3 ubiquitin 96.9 0.0006 1.3E-08 68.6 2.6 52 119-174 79-130 (398)
52 KOG0801 Predicted E3 ubiquitin 96.8 0.00037 8.1E-09 61.5 0.7 41 111-152 164-204 (205)
53 KOG0978 E3 ubiquitin ligase in 96.7 0.00058 1.3E-08 72.6 1.4 49 124-176 643-692 (698)
54 KOG1941 Acetylcholine receptor 96.6 0.0012 2.6E-08 65.6 2.3 48 125-173 366-416 (518)
55 PF05883 Baculo_RING: Baculovi 96.5 0.00098 2.1E-08 57.3 1.2 35 124-159 26-66 (134)
56 KOG3970 Predicted E3 ubiquitin 96.5 0.0019 4E-08 59.9 3.0 50 125-176 51-108 (299)
57 KOG0826 Predicted E3 ubiquitin 96.4 0.0065 1.4E-07 59.2 6.3 45 122-169 298-342 (357)
58 KOG0297 TNF receptor-associate 96.4 0.0017 3.6E-08 65.6 2.2 53 124-179 21-73 (391)
59 KOG1428 Inhibitor of type V ad 96.3 0.0025 5.5E-08 71.5 3.2 66 108-174 3469-3545(3738)
60 PF11789 zf-Nse: Zinc-finger o 96.3 0.0037 8.1E-08 46.1 2.9 41 124-167 11-53 (57)
61 PF12906 RINGv: RING-variant d 96.1 0.0032 6.8E-08 44.6 1.8 40 127-168 1-47 (47)
62 PHA02862 5L protein; Provision 95.4 0.013 2.9E-07 50.9 3.0 47 125-176 3-56 (156)
63 COG5152 Uncharacterized conser 95.3 0.008 1.7E-07 54.9 1.5 46 124-173 196-241 (259)
64 KOG1571 Predicted E3 ubiquitin 95.3 0.0091 2E-07 58.9 2.0 44 124-174 305-348 (355)
65 KOG2660 Locus-specific chromos 95.2 0.0059 1.3E-07 59.5 0.3 51 122-175 13-63 (331)
66 KOG1002 Nucleotide excision re 95.2 0.0098 2.1E-07 61.2 1.9 52 120-175 532-588 (791)
67 KOG1952 Transcription factor N 95.2 0.01 2.2E-07 64.1 2.0 52 122-173 189-247 (950)
68 KOG1814 Predicted E3 ubiquitin 95.0 0.011 2.5E-07 59.1 1.8 47 123-170 183-237 (445)
69 PHA03096 p28-like protein; Pro 95.0 0.012 2.7E-07 56.9 1.8 46 125-170 179-231 (284)
70 PHA02825 LAP/PHD finger-like p 94.7 0.031 6.7E-07 49.5 3.4 49 123-175 7-61 (162)
71 PF10367 Vps39_2: Vacuolar sor 94.6 0.014 3.1E-07 47.1 1.2 31 124-156 78-108 (109)
72 KOG4275 Predicted E3 ubiquitin 94.6 0.007 1.5E-07 58.2 -0.8 44 124-175 300-344 (350)
73 KOG4692 Predicted E3 ubiquitin 94.5 0.025 5.4E-07 55.8 2.6 49 122-174 420-468 (489)
74 KOG3039 Uncharacterized conser 94.5 0.03 6.5E-07 52.8 2.9 52 124-175 221-272 (303)
75 KOG2879 Predicted E3 ubiquitin 94.3 0.038 8.1E-07 52.9 3.3 49 122-173 237-287 (298)
76 COG5222 Uncharacterized conser 94.3 0.038 8.3E-07 53.4 3.3 48 125-175 275-324 (427)
77 PF14570 zf-RING_4: RING/Ubox 94.0 0.042 9.2E-07 39.2 2.3 44 127-171 1-46 (48)
78 KOG0827 Predicted E3 ubiquitin 94.0 0.0049 1.1E-07 61.2 -3.4 50 125-175 197-247 (465)
79 COG5236 Uncharacterized conser 93.8 0.072 1.6E-06 52.5 4.2 65 106-174 42-109 (493)
80 PF08746 zf-RING-like: RING-li 93.6 0.038 8.2E-07 38.4 1.5 41 127-168 1-43 (43)
81 PF04641 Rtf2: Rtf2 RING-finge 93.4 0.083 1.8E-06 50.4 3.9 51 122-173 111-161 (260)
82 KOG1813 Predicted E3 ubiquitin 93.1 0.033 7.1E-07 53.7 0.7 46 125-174 242-287 (313)
83 KOG4739 Uncharacterized protei 93.1 0.032 7E-07 52.3 0.5 46 126-175 5-50 (233)
84 KOG4185 Predicted E3 ubiquitin 93.0 0.071 1.5E-06 51.3 2.9 48 124-172 3-54 (296)
85 KOG3268 Predicted E3 ubiquitin 92.6 0.071 1.5E-06 48.1 2.0 29 145-173 189-228 (234)
86 PF14447 Prok-RING_4: Prokaryo 92.1 0.076 1.6E-06 38.9 1.2 45 125-175 8-52 (55)
87 KOG1940 Zn-finger protein [Gen 90.7 0.14 3E-06 49.4 1.8 50 124-175 158-208 (276)
88 PF14446 Prok-RING_1: Prokaryo 90.3 0.32 7E-06 35.5 3.0 34 124-157 5-38 (54)
89 KOG1001 Helicase-like transcri 90.2 0.11 2.4E-06 55.9 0.9 47 125-176 455-503 (674)
90 KOG2932 E3 ubiquitin ligase in 90.1 0.11 2.5E-06 50.4 0.7 44 125-173 91-134 (389)
91 KOG2114 Vacuolar assembly/sort 89.4 0.18 3.9E-06 54.8 1.6 40 125-170 841-880 (933)
92 KOG0298 DEAD box-containing he 89.2 0.14 3E-06 57.9 0.7 46 124-172 1153-1198(1394)
93 KOG0309 Conserved WD40 repeat- 88.9 0.23 5E-06 53.4 2.0 23 145-167 1047-1069(1081)
94 KOG3161 Predicted E3 ubiquitin 88.6 0.16 3.6E-06 53.6 0.7 44 125-171 12-55 (861)
95 PF10272 Tmpp129: Putative tra 88.0 0.38 8.3E-06 48.1 2.8 27 146-172 311-350 (358)
96 PF01708 Gemini_mov: Geminivir 87.8 0.52 1.1E-05 37.8 2.9 39 28-66 24-62 (91)
97 KOG2817 Predicted E3 ubiquitin 86.5 2.5 5.4E-05 42.6 7.5 46 122-168 332-380 (394)
98 PF07800 DUF1644: Protein of u 86.1 0.69 1.5E-05 41.0 3.0 34 124-160 2-47 (162)
99 KOG1100 Predicted E3 ubiquitin 85.7 0.43 9.4E-06 44.2 1.7 40 127-174 161-201 (207)
100 COG5183 SSM4 Protein involved 85.0 0.62 1.3E-05 50.6 2.6 54 124-178 12-71 (1175)
101 COG5175 MOT2 Transcriptional r 84.9 0.67 1.5E-05 45.8 2.6 52 124-176 14-67 (480)
102 PF05290 Baculo_IE-1: Baculovi 84.5 0.8 1.7E-05 39.5 2.6 54 123-176 79-135 (140)
103 KOG0269 WD40 repeat-containing 83.5 0.89 1.9E-05 49.1 3.0 41 125-167 780-820 (839)
104 KOG1609 Protein involved in mR 82.9 0.63 1.4E-05 44.6 1.5 51 124-175 78-136 (323)
105 PF03854 zf-P11: P-11 zinc fin 82.9 0.51 1.1E-05 33.6 0.6 43 126-174 4-47 (50)
106 KOG2034 Vacuolar sorting prote 81.8 0.76 1.7E-05 50.4 1.7 34 124-159 817-850 (911)
107 KOG0802 E3 ubiquitin ligase [P 77.5 1.3 2.9E-05 46.6 1.9 45 124-176 479-523 (543)
108 KOG0825 PHD Zn-finger protein 77.4 1.1 2.4E-05 48.6 1.3 52 125-176 97-157 (1134)
109 KOG1812 Predicted E3 ubiquitin 74.3 1.2 2.7E-05 44.9 0.6 38 124-162 146-184 (384)
110 KOG3002 Zn finger protein [Gen 74.2 2.4 5.1E-05 41.5 2.5 48 121-174 45-92 (299)
111 KOG3053 Uncharacterized conser 72.4 1.9 4.1E-05 41.1 1.4 49 124-173 20-82 (293)
112 KOG4362 Transcriptional regula 70.7 1.2 2.6E-05 47.9 -0.5 47 124-174 21-70 (684)
113 PF01102 Glycophorin_A: Glycop 70.3 6.5 0.00014 33.5 4.0 24 40-63 65-88 (122)
114 PF12877 DUF3827: Domain of un 69.3 5.5 0.00012 42.6 4.0 44 10-54 241-285 (684)
115 KOG3899 Uncharacterized conser 68.6 2.7 5.8E-05 40.9 1.5 28 146-173 325-365 (381)
116 KOG3800 Predicted E3 ubiquitin 68.6 4.3 9.4E-05 39.4 2.9 50 126-175 2-53 (300)
117 PF13901 DUF4206: Domain of un 66.7 4.1 8.9E-05 37.4 2.3 40 124-169 152-196 (202)
118 PF00558 Vpu: Vpu protein; In 65.9 17 0.00036 28.9 5.2 6 100-105 58-63 (81)
119 PHA02650 hypothetical protein; 65.5 12 0.00027 29.4 4.3 9 37-45 48-56 (81)
120 PHA02819 hypothetical protein; 62.9 16 0.00034 28.2 4.4 12 37-48 45-56 (71)
121 PHA02844 putative transmembran 62.8 11 0.00023 29.4 3.5 8 37-44 47-54 (75)
122 PHA02975 hypothetical protein; 62.2 18 0.00038 27.8 4.5 25 34-58 40-64 (69)
123 PF06024 DUF912: Nucleopolyhed 62.2 3 6.5E-05 34.2 0.4 27 36-62 59-85 (101)
124 KOG1829 Uncharacterized conser 62.2 3.1 6.8E-05 44.1 0.7 41 124-168 511-556 (580)
125 KOG4718 Non-SMC (structural ma 61.8 4.4 9.6E-05 37.7 1.5 43 124-169 181-223 (235)
126 KOG1815 Predicted E3 ubiquitin 60.9 12 0.00026 38.4 4.6 37 122-161 68-104 (444)
127 smart00132 LIM Zinc-binding do 59.3 8.2 0.00018 24.6 2.1 37 127-173 2-38 (39)
128 COG5220 TFB3 Cdk activating ki 58.3 4.3 9.3E-05 38.5 0.8 49 124-172 10-63 (314)
129 smart00249 PHD PHD zinc finger 56.9 7.7 0.00017 25.6 1.7 30 127-157 2-31 (47)
130 PF15176 LRR19-TM: Leucine-ric 56.7 28 0.0006 28.7 5.1 23 32-54 11-33 (102)
131 PHA03054 IMV membrane protein; 56.7 21 0.00045 27.5 4.1 10 37-46 47-56 (72)
132 KOG2066 Vacuolar assembly/sort 56.5 4.4 9.5E-05 44.2 0.6 42 125-168 785-830 (846)
133 PLN02189 cellulose synthase 56.1 12 0.00026 42.3 3.9 54 124-177 34-91 (1040)
134 PF07975 C1_4: TFIIH C1-like d 55.5 9.3 0.0002 27.6 2.0 42 127-169 2-50 (51)
135 PF12575 DUF3753: Protein of u 52.9 24 0.00052 27.3 3.9 13 37-49 47-59 (72)
136 PLN02400 cellulose synthase 52.6 12 0.00027 42.4 3.2 54 124-177 36-93 (1085)
137 PF02891 zf-MIZ: MIZ/SP-RING z 51.6 16 0.00034 26.0 2.7 42 126-171 4-50 (50)
138 PF00412 LIM: LIM domain; Int 51.6 10 0.00023 26.7 1.8 39 127-175 1-39 (58)
139 PF02439 Adeno_E3_CR2: Adenovi 51.5 37 0.00081 23.1 4.2 28 39-67 7-34 (38)
140 KOG3113 Uncharacterized conser 51.4 14 0.00031 35.3 3.0 49 123-173 110-158 (293)
141 KOG3005 GIY-YIG type nuclease 50.9 9.3 0.0002 36.8 1.7 49 125-173 183-243 (276)
142 TIGR00622 ssl1 transcription f 50.2 20 0.00043 30.2 3.4 45 125-169 56-110 (112)
143 PF15102 TMEM154: TMEM154 prot 50.2 6 0.00013 34.7 0.3 9 153-161 128-136 (146)
144 PF06906 DUF1272: Protein of u 50.0 19 0.00041 26.6 2.8 43 126-173 7-52 (57)
145 PF07010 Endomucin: Endomucin; 49.9 32 0.0007 32.4 5.0 20 40-59 192-211 (259)
146 PLN02638 cellulose synthase A 49.1 18 0.00038 41.2 3.8 54 124-177 17-74 (1079)
147 PF03229 Alpha_GJ: Alphavirus 47.9 49 0.0011 28.0 5.3 20 50-69 95-114 (126)
148 PLN02436 cellulose synthase A 46.9 20 0.00044 40.7 3.8 54 124-177 36-93 (1094)
149 PHA02692 hypothetical protein; 45.8 44 0.00094 25.8 4.3 9 36-44 43-51 (70)
150 PF00628 PHD: PHD-finger; Int 45.3 9.5 0.00021 26.5 0.7 42 127-169 2-49 (51)
151 KOG4367 Predicted Zn-finger pr 44.7 11 0.00024 38.7 1.3 31 125-159 5-35 (699)
152 PF10571 UPF0547: Uncharacteri 43.7 13 0.00027 23.1 0.9 22 127-150 3-24 (26)
153 PRK14710 hypothetical protein; 43.4 19 0.00041 27.8 2.1 27 36-62 6-32 (86)
154 COG5109 Uncharacterized conser 42.1 83 0.0018 31.2 6.7 46 122-168 334-382 (396)
155 PF08113 CoxIIa: Cytochrome c 41.9 65 0.0014 21.3 4.0 19 40-58 6-24 (34)
156 KOG3842 Adaptor protein Pellin 41.7 23 0.0005 35.0 2.9 52 124-176 341-417 (429)
157 KOG1812 Predicted E3 ubiquitin 40.4 14 0.00031 37.3 1.3 70 98-168 276-351 (384)
158 PF14569 zf-UDP: Zinc-binding 40.2 37 0.00081 26.7 3.3 54 124-177 9-66 (80)
159 KOG2068 MOT2 transcription fac 39.7 20 0.00044 35.4 2.2 48 125-173 250-298 (327)
160 PF13260 DUF4051: Protein of u 37.6 45 0.00098 23.9 3.1 23 50-72 10-32 (54)
161 PF15018 InaF-motif: TRP-inter 37.6 40 0.00087 22.9 2.7 23 39-61 8-30 (38)
162 PF01363 FYVE: FYVE zinc finge 37.2 16 0.00035 27.1 0.9 37 123-159 8-44 (69)
163 KOG2807 RNA polymerase II tran 36.8 33 0.00071 34.1 3.1 47 123-170 329-375 (378)
164 PF15176 LRR19-TM: Leucine-ric 36.3 47 0.001 27.4 3.5 31 39-70 14-44 (102)
165 PF11980 DUF3481: Domain of un 36.1 25 0.00054 28.1 1.8 33 38-70 12-44 (87)
166 PRK00523 hypothetical protein; 36.0 73 0.0016 24.7 4.3 19 43-61 7-25 (72)
167 TIGR01478 STEVOR variant surfa 34.6 43 0.00092 32.7 3.4 22 41-62 261-282 (295)
168 PF12575 DUF3753: Protein of u 33.8 87 0.0019 24.3 4.4 27 33-59 40-66 (72)
169 PF15102 TMEM154: TMEM154 prot 33.7 11 0.00023 33.2 -0.7 6 33-38 52-57 (146)
170 PF04423 Rad50_zn_hook: Rad50 33.7 13 0.00027 26.7 -0.2 12 164-175 22-33 (54)
171 PF08374 Protocadherin: Protoc 33.5 19 0.0004 33.7 0.8 26 41-67 39-64 (221)
172 PRK01844 hypothetical protein; 33.4 83 0.0018 24.4 4.2 15 47-61 10-24 (72)
173 PF02009 Rifin_STEVOR: Rifin/s 32.9 81 0.0018 30.9 5.2 15 45-59 262-276 (299)
174 PF13719 zinc_ribbon_5: zinc-r 32.8 26 0.00057 23.2 1.3 26 126-151 4-36 (37)
175 PTZ00370 STEVOR; Provisional 32.8 43 0.00093 32.7 3.1 22 41-62 257-278 (296)
176 PF15050 SCIMP: SCIMP protein 32.3 86 0.0019 26.8 4.5 16 36-51 6-21 (133)
177 PF06844 DUF1244: Protein of u 32.1 28 0.0006 26.6 1.4 12 149-160 11-22 (68)
178 PF13717 zinc_ribbon_4: zinc-r 32.0 28 0.00061 23.0 1.3 26 126-151 4-36 (36)
179 PF06024 DUF912: Nucleopolyhed 31.8 22 0.00049 29.0 1.0 33 35-67 55-87 (101)
180 PF13807 GNVR: G-rich domain o 31.7 1E+02 0.0023 23.6 4.7 23 37-59 55-77 (82)
181 PF05568 ASFV_J13L: African sw 30.5 84 0.0018 27.8 4.3 7 43-49 33-39 (189)
182 PHA02819 hypothetical protein; 30.5 1.3E+02 0.0029 23.2 4.9 30 34-64 39-68 (71)
183 KOG3039 Uncharacterized conser 29.0 38 0.00083 32.4 2.1 35 122-160 41-75 (303)
184 cd00065 FYVE FYVE domain; Zinc 28.8 41 0.00089 23.7 1.8 35 125-159 3-37 (57)
185 PF08113 CoxIIa: Cytochrome c 28.7 1.8E+02 0.0039 19.3 4.5 25 40-64 9-33 (34)
186 PF00558 Vpu: Vpu protein; In 28.3 91 0.002 24.7 3.8 7 55-61 19-25 (81)
187 PF13832 zf-HC5HC2H_2: PHD-zin 28.2 46 0.00099 26.9 2.2 33 124-158 55-88 (110)
188 KOG1729 FYVE finger containing 28.0 12 0.00025 36.6 -1.6 36 125-161 215-250 (288)
189 PF04710 Pellino: Pellino; In 27.7 20 0.00043 36.4 0.0 33 135-171 299-337 (416)
190 PF10577 UPF0560: Uncharacteri 26.8 70 0.0015 35.4 3.9 36 286-321 635-677 (807)
191 PF04277 OAD_gamma: Oxaloaceta 26.8 1E+02 0.0022 23.4 3.9 11 43-53 7-17 (79)
192 KOG0956 PHD finger protein AF1 26.7 26 0.00056 38.1 0.6 52 125-176 118-185 (900)
193 PF10083 DUF2321: Uncharacteri 26.6 46 0.001 29.6 2.0 48 128-178 8-55 (158)
194 PF02480 Herpes_gE: Alphaherpe 26.5 22 0.00047 36.7 0.0 28 37-64 350-377 (439)
195 smart00064 FYVE Protein presen 26.4 53 0.0012 24.1 2.1 36 124-159 10-45 (68)
196 PHA02844 putative transmembran 26.3 1.6E+02 0.0035 23.0 4.7 30 34-64 41-70 (75)
197 KOG2979 Protein involved in DN 26.3 35 0.00076 32.7 1.4 40 125-167 177-218 (262)
198 PTZ00046 rifin; Provisional 26.2 1.3E+02 0.0028 30.4 5.3 25 41-66 317-341 (358)
199 PF08114 PMP1_2: ATPase proteo 25.9 38 0.00082 23.4 1.1 18 40-57 11-28 (43)
200 PF06937 EURL: EURL protein; 25.8 54 0.0012 31.7 2.5 49 124-174 30-80 (285)
201 KOG0196 Tyrosine kinase, EPH ( 25.7 99 0.0021 34.6 4.7 43 10-53 520-562 (996)
202 PF07423 DUF1510: Protein of u 25.4 56 0.0012 30.6 2.5 16 45-60 19-34 (217)
203 COG4847 Uncharacterized protei 25.2 55 0.0012 26.8 2.1 34 124-159 6-39 (103)
204 PF05715 zf-piccolo: Piccolo Z 25.2 49 0.0011 24.8 1.6 14 162-175 2-15 (61)
205 PF09943 DUF2175: Uncharacteri 25.0 58 0.0013 26.9 2.2 32 126-159 4-35 (101)
206 TIGR01477 RIFIN variant surfac 24.9 1.4E+02 0.0031 30.0 5.3 24 41-65 312-335 (353)
207 PF06305 DUF1049: Protein of u 24.4 2.1E+02 0.0045 20.8 5.1 17 38-54 18-34 (68)
208 PF05393 Hum_adeno_E3A: Human 24.0 80 0.0017 25.5 2.7 7 62-68 51-57 (94)
209 PF14169 YdjO: Cold-inducible 23.7 39 0.00085 25.2 0.9 16 162-177 39-54 (59)
210 PF05605 zf-Di19: Drought indu 23.4 35 0.00075 24.3 0.6 12 125-136 3-14 (54)
211 PF11446 DUF2897: Protein of u 23.1 1.2E+02 0.0026 22.2 3.4 13 39-51 6-18 (55)
212 PHA02975 hypothetical protein; 23.0 2E+02 0.0044 22.1 4.7 30 34-64 37-66 (69)
213 PF14979 TMEM52: Transmembrane 22.8 1.4E+02 0.003 26.4 4.2 15 54-68 33-48 (154)
214 KOG4482 Sarcoglycan complex, a 22.7 1.6E+02 0.0034 30.1 5.1 35 34-68 289-323 (449)
215 PF14654 Epiglycanin_C: Mucin, 22.5 2.3E+02 0.0051 23.3 5.2 26 37-62 17-42 (106)
216 cd00350 rubredoxin_like Rubred 22.3 44 0.00095 21.5 0.8 9 162-170 17-25 (33)
217 PF07010 Endomucin: Endomucin; 22.0 1.5E+02 0.0032 28.2 4.5 30 38-67 186-215 (259)
218 KOG2113 Predicted RNA binding 21.9 74 0.0016 31.5 2.6 44 123-172 342-386 (394)
219 KOG4185 Predicted E3 ubiquitin 21.4 20 0.00042 34.4 -1.4 48 125-172 208-266 (296)
220 COG5151 SSL1 RNA polymerase II 21.4 70 0.0015 31.7 2.4 34 100-133 284-317 (421)
221 PF10883 DUF2681: Protein of u 21.2 1.2E+02 0.0025 24.4 3.2 16 46-61 7-22 (87)
222 PF03908 Sec20: Sec20; InterP 21.0 1.1E+02 0.0023 24.3 3.0 14 49-62 76-89 (92)
223 PLN02915 cellulose synthase A 20.9 1.1E+02 0.0024 35.0 4.0 54 123-176 14-71 (1044)
224 KOG3751 Growth factor receptor 20.8 1.9E+02 0.0041 30.8 5.4 65 277-346 513-578 (622)
225 PF07204 Orthoreo_P10: Orthore 20.8 1.2E+02 0.0026 24.8 3.2 8 62-69 60-67 (98)
226 PF14311 DUF4379: Domain of un 20.8 62 0.0013 23.1 1.5 23 145-168 33-55 (55)
227 PHA02650 hypothetical protein; 20.6 1.9E+02 0.004 22.9 4.1 30 35-65 43-72 (81)
228 PF07649 C1_3: C1-like domain; 20.6 81 0.0018 19.6 1.8 29 126-155 2-30 (30)
229 PHA03164 hypothetical protein; 20.5 89 0.0019 24.6 2.3 24 40-63 60-83 (88)
230 KOG2071 mRNA cleavage and poly 20.5 51 0.0011 35.1 1.3 35 122-158 511-556 (579)
231 KOG0824 Predicted E3 ubiquitin 20.4 37 0.0008 33.4 0.3 50 123-175 104-153 (324)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1e-19 Score=176.86 Aligned_cols=81 Identities=31% Similarity=0.797 Sum_probs=70.2
Q ss_pred CCCCHHHHhcCCceeeeccCCCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCC-CCcccCCCCCCCCC
Q 019053 100 RGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN-CPLCRTSISGTTRY 178 (347)
Q Consensus 100 ~gl~~~~i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~t-CPlCR~~i~~~~~~ 178 (347)
+++.+..++++|..+|+..........|+||||+|+.||++++|| |+|.||..|||+||..+.+ ||+||+++......
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 467788999999999998866554479999999999999999999 9999999999999988755 99999999877655
Q ss_pred CCC
Q 019053 179 PID 181 (347)
Q Consensus 179 ~~~ 181 (347)
+..
T Consensus 284 ~~~ 286 (348)
T KOG4628|consen 284 EPV 286 (348)
T ss_pred CCc
Confidence 433
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.50 E-value=9.2e-15 Score=101.95 Aligned_cols=44 Identities=45% Similarity=1.167 Sum_probs=40.5
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCccc
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR 169 (347)
++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999999999998 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.30 E-value=1.6e-12 Score=121.66 Aligned_cols=76 Identities=26% Similarity=0.698 Sum_probs=59.1
Q ss_pred CCCCCHHHHhcCCceeeecc--CCCCccCcccccccccccCCc----eeecCCCCccccHHHHHHHHhcCCCCCcccCCC
Q 019053 99 NRGLDDSVIRDIPTFQFKRE--GEDMSIYGCVVCLNEFQEQDM----LRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI 172 (347)
Q Consensus 99 ~~gl~~~~i~~lp~~~~~~~--~~~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i 172 (347)
.+|..+..++.+|.+..+-. .......+|+||++++.+++. +.+++.|+|.||.+||..|+..+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 45678889999999875543 223345789999999876541 234545999999999999999999999999987
Q ss_pred CC
Q 019053 173 SG 174 (347)
Q Consensus 173 ~~ 174 (347)
..
T Consensus 227 ~~ 228 (238)
T PHA02929 227 IS 228 (238)
T ss_pred eE
Confidence 63
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.1e-12 Score=121.35 Aligned_cols=50 Identities=46% Similarity=1.129 Sum_probs=45.6
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~ 174 (347)
.-+|+|||++|..++.+++|| |.|.||..|+++|+.. +..||+||+++.+
T Consensus 323 GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 478999999999999999999 9999999999999985 4569999999864
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.25 E-value=5.1e-12 Score=97.84 Aligned_cols=45 Identities=38% Similarity=0.962 Sum_probs=35.5
Q ss_pred cCcccccccccccC----------CceeecCCCCccccHHHHHHHHhcCCCCCccc
Q 019053 124 IYGCVVCLNEFQEQ----------DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169 (347)
Q Consensus 124 ~~~C~ICl~~~~~~----------~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR 169 (347)
.+.|+||++.|.+. -.+...+ |||.||..||..||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34599999999332 2344455 999999999999999999999997
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.1e-11 Score=120.30 Aligned_cols=65 Identities=31% Similarity=0.713 Sum_probs=50.1
Q ss_pred hcCCceeeeccCCCCccCcccccccc-cccC---------CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 108 RDIPTFQFKREGEDMSIYGCVVCLNE-FQEQ---------DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 108 ~~lp~~~~~~~~~~~~~~~C~ICl~~-~~~~---------~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
+.+|+.+.++. .+++..|+||+++ |..+ ...+.|| |||+||.+|++.|++.+++||+||.++...
T Consensus 273 ~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd 347 (491)
T COG5243 273 AMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFD 347 (491)
T ss_pred hhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccccc
Confidence 34565554443 3456789999999 4443 2467898 999999999999999999999999995544
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=1.2e-09 Score=74.32 Aligned_cols=44 Identities=52% Similarity=1.235 Sum_probs=36.6
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSI 172 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i 172 (347)
+|+||++.+ .+.+..++ |+|.||..|++.|++. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 33455555 9999999999999987 67799998764
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=7.4e-10 Score=102.08 Aligned_cols=56 Identities=32% Similarity=0.790 Sum_probs=45.0
Q ss_pred CCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC---CCCCcccCCCCCCCCCCC
Q 019053 121 DMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN---ANCPLCRTSISGTTRYPI 180 (347)
Q Consensus 121 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~---~tCPlCR~~i~~~~~~~~ 180 (347)
.....+|.|||+.-++ .+++. |||.||+.||-+||+.+ +.||+||..|...+.+|+
T Consensus 44 ~~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 4556899999998555 34554 99999999999999874 348999999998876654
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.87 E-value=1.6e-09 Score=77.44 Aligned_cols=46 Identities=30% Similarity=0.842 Sum_probs=39.2
Q ss_pred cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
+..|.||++...+ +.++| |||. |+..|+..|++....||+||++|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 3579999998655 77888 9999 999999999999999999999885
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.86 E-value=1.3e-09 Score=98.64 Aligned_cols=51 Identities=29% Similarity=0.805 Sum_probs=41.3
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc----------------CCCCCcccCCCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----------------NANCPLCRTSISGTTR 177 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----------------~~tCPlCR~~i~~~~~ 177 (347)
+..+|+||++.+++ ..+++ |||.||..||..|+.. ...||+||..+....-
T Consensus 17 ~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 17 GDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred CccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 45789999999866 45676 9999999999999852 2469999999976553
No 11
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.6e-09 Score=102.63 Aligned_cols=50 Identities=32% Similarity=0.767 Sum_probs=43.4
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTR 177 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~~ 177 (347)
...|.+||+...+ ..-+| |||+||..||..|......||+||..+.+.+.
T Consensus 239 ~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 239 TRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 3579999998776 55677 99999999999999999999999999887653
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.82 E-value=3e-09 Score=72.22 Aligned_cols=39 Identities=41% Similarity=1.161 Sum_probs=32.9
Q ss_pred ccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcc
Q 019053 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLC 168 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlC 168 (347)
|+||++.+.+ .+..++ |||.|+..||..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999887 346676 99999999999999998899998
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.80 E-value=3.4e-09 Score=83.94 Aligned_cols=50 Identities=36% Similarity=0.793 Sum_probs=38.9
Q ss_pred cCccccccccccc--------CC-ceeecCCCCccccHHHHHHHHhc---CCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQE--------QD-MLRVLPNCSHAFHLDCIDIWLQS---NANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~--------~~-~~~~lp~C~H~FH~~CI~~WL~~---~~tCPlCR~~i~ 173 (347)
++.|.||...|.. |+ -..++..|+|.||.+||.+||.+ +..||+||+...
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5679999999973 22 23344469999999999999985 467999999764
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=98.76 E-value=2.9e-09 Score=97.79 Aligned_cols=55 Identities=29% Similarity=0.767 Sum_probs=41.4
Q ss_pred CCccCcccccccccccC-----CceeecCCCCccccHHHHHHHHhcC------CCCCcccCCCCCC
Q 019053 121 DMSIYGCVVCLNEFQEQ-----DMLRVLPNCSHAFHLDCIDIWLQSN------ANCPLCRTSISGT 175 (347)
Q Consensus 121 ~~~~~~C~ICl~~~~~~-----~~~~~lp~C~H~FH~~CI~~WL~~~------~tCPlCR~~i~~~ 175 (347)
...+.+|+|||+...++ ..-.+|+.|+|.||..||..|...+ .+||+||..+...
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 34457899999987443 1234666799999999999999753 3599999987643
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.6e-09 Score=110.29 Aligned_cols=51 Identities=35% Similarity=0.873 Sum_probs=45.0
Q ss_pred ccCcccccccccccCCc--eeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDM--LRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~--~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
....|+||+|++..+.. ...|| |+|+||..|+..|++..++||.||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 35789999999998765 77888 99999999999999999999999995543
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.6e-08 Score=89.98 Aligned_cols=51 Identities=31% Similarity=0.737 Sum_probs=42.5
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
.....|+|||+.+.+...+ ..+|||+||..||+.-++....||+|+..|..
T Consensus 129 ~~~~~CPiCl~~~sek~~v--sTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPV--STKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhcccc--ccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3347899999999886443 23599999999999999999999999987764
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.62 E-value=2.5e-08 Score=69.59 Aligned_cols=44 Identities=27% Similarity=0.818 Sum_probs=38.2
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT 170 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~ 170 (347)
.|.||++.|.......+++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666788887 9999999999999866678999985
No 18
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.61 E-value=2e-08 Score=78.02 Aligned_cols=51 Identities=35% Similarity=0.645 Sum_probs=38.8
Q ss_pred Ccccccccccc-----------cCC-ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQ-----------EQD-MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~-----------~~~-~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
+.|+||...|. .++ -....-.|+|.||.+||..||.++..||+||+.....
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 56888777664 233 2333446999999999999999999999999887543
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.59 E-value=3e-08 Score=67.61 Aligned_cols=39 Identities=44% Similarity=1.227 Sum_probs=33.1
Q ss_pred ccccccccccCCceeecCCCCccccHHHHHHHHh--cCCCCCcc
Q 019053 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ--SNANCPLC 168 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~--~~~tCPlC 168 (347)
|+||++.+.... .+++ |+|.|+..||..|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988753 4676 999999999999998 45569998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.58 E-value=4.4e-08 Score=64.23 Aligned_cols=38 Identities=47% Similarity=1.192 Sum_probs=32.3
Q ss_pred ccccccccccCCceeecCCCCccccHHHHHHHHh-cCCCCCcc
Q 019053 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLC 168 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlC 168 (347)
|+||++.. .....++ |+|.||..|++.|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78998883 3477787 999999999999998 56679988
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.50 E-value=9e-08 Score=66.31 Aligned_cols=38 Identities=34% Similarity=0.952 Sum_probs=29.4
Q ss_pred ccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcc
Q 019053 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLC 168 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlC 168 (347)
|+||++.|.+ ...|+ |||.|+..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999998 67787 99999999999998653 359988
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.49 E-value=1.1e-07 Score=70.33 Aligned_cols=47 Identities=19% Similarity=0.527 Sum_probs=40.5
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..|+||++.+.+. .+++ |||+|+..||..|++.+.+||+|+..+...
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~ 48 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHE 48 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence 3599999998873 5677 999999999999999889999999887543
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=2.3e-07 Score=92.87 Aligned_cols=49 Identities=31% Similarity=0.663 Sum_probs=42.1
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
....|+||++.|.. ..+++ |+|.||..||..|+.....||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 45689999999976 34677 999999999999999888899999988754
No 24
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=8.5e-08 Score=73.98 Aligned_cols=49 Identities=37% Similarity=0.811 Sum_probs=37.4
Q ss_pred Cccccccccccc---------CCceeecCCCCccccHHHHHHHHhcC---CCCCcccCCCC
Q 019053 125 YGCVVCLNEFQE---------QDMLRVLPNCSHAFHLDCIDIWLQSN---ANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~---------~~~~~~lp~C~H~FH~~CI~~WL~~~---~tCPlCR~~i~ 173 (347)
+.|.||.-.|.. ++-..++-.|.|.||..||.+|+... ..||+||+...
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 479999999863 22233444699999999999999754 44999998764
No 25
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.4e-07 Score=87.21 Aligned_cols=53 Identities=28% Similarity=0.602 Sum_probs=43.4
Q ss_pred CccCcccccccccccCC-------ceeecCCCCccccHHHHHHHH--hcCCCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQD-------MLRVLPNCSHAFHLDCIDIWL--QSNANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~FH~~CI~~WL--~~~~tCPlCR~~i~~~ 175 (347)
.++..|+||-..+.... ++-.|. |+|+||..||.-|- ..+++||.|+..++..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 44578999988886654 567787 99999999999994 5578999999888754
No 26
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.26 E-value=1.6e-07 Score=100.25 Aligned_cols=54 Identities=30% Similarity=0.728 Sum_probs=41.2
Q ss_pred CCCccCcccccccccccCC---ceeecCCCCccccHHHHHHHHhc--CCCCCcccCCCC
Q 019053 120 EDMSIYGCVVCLNEFQEQD---MLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSIS 173 (347)
Q Consensus 120 ~~~~~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i~ 173 (347)
.-.+.++|+||...+..-+ .-...++|.|-||..|+-+|+.+ +++||+||..+.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3445689999998876322 12344579999999999999976 567999998775
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6e-07 Score=90.43 Aligned_cols=50 Identities=28% Similarity=0.838 Sum_probs=39.4
Q ss_pred cCcccccccccccCC--------------ceeecCCCCccccHHHHHHHHhcCC-CCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQEQD--------------MLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~--------------~~~~lp~C~H~FH~~CI~~WL~~~~-tCPlCR~~i~~ 174 (347)
..+|+|||.++.-.. .-.++| |.|+||..|+..|+..-+ .||+||.++.+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 468999999875311 133567 999999999999999655 79999998864
No 28
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.18 E-value=1.2e-06 Score=62.64 Aligned_cols=42 Identities=24% Similarity=0.788 Sum_probs=32.9
Q ss_pred cccccccccccCCceeecCCCC-----ccccHHHHHHHHhcC--CCCCccc
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCS-----HAFHLDCIDIWLQSN--ANCPLCR 169 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~~--~tCPlCR 169 (347)
.|-||++ ..+++...+.| |. |.+|..|+..|+... .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3899999 44445556788 85 899999999999654 4799995
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=8.3e-07 Score=83.48 Aligned_cols=50 Identities=36% Similarity=0.860 Sum_probs=41.1
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHH-HHhcCCC-CCcccCCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI-WLQSNAN-CPLCRTSISGTTR 177 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~-WL~~~~t-CPlCR~~i~~~~~ 177 (347)
+..|+||++.... ...++ |||+||..||.. |-..+.- ||+||+.+.+.+.
T Consensus 215 d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 5679999998766 56677 999999999999 9766555 9999999876653
No 30
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.9e-06 Score=70.20 Aligned_cols=50 Identities=30% Similarity=0.743 Sum_probs=38.7
Q ss_pred cCcccccccccc-------------cCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQ-------------EQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~-------------~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
.+.|+||..-+- .++-....-.|+|.||..||..||++++.||||-++..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 467999987652 22334444469999999999999999999999977654
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.97 E-value=5.6e-06 Score=57.72 Aligned_cols=34 Identities=32% Similarity=0.807 Sum_probs=21.8
Q ss_pred ccccccccccCC-ceeecCCCCccccHHHHHHHHhcC
Q 019053 127 CVVCLNEFQEQD-MLRVLPNCSHAFHLDCIDIWLQSN 162 (347)
Q Consensus 127 C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~ 162 (347)
|+||++ |.+.+ ...+|+ |||+|+.+||+.|++..
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 75544 568898 99999999999999854
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.6e-06 Score=81.52 Aligned_cols=48 Identities=35% Similarity=0.751 Sum_probs=42.3
Q ss_pred cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..+|.|||.+-.+ +.+|| |.|. .|..|.+..--.++.||+||++|...
T Consensus 290 gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 290 GKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred CCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 5789999999776 78999 9998 99999999877788999999998754
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.90 E-value=6.5e-06 Score=63.52 Aligned_cols=48 Identities=21% Similarity=0.515 Sum_probs=37.6
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~ 175 (347)
...|+||.+-|.+ ..++| |||.|...||..||.. +.+||+|+.++...
T Consensus 4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 4679999999988 56788 9999999999999998 78899999888754
No 34
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=6.4e-06 Score=83.75 Aligned_cols=49 Identities=27% Similarity=0.558 Sum_probs=38.3
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-----CCCCCcccCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-----NANCPLCRTSISGTT 176 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~tCPlCR~~i~~~~ 176 (347)
...|+|||+.... ...+. |||+||..||-.++.. ...||+||..|....
T Consensus 186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 5679999998665 33444 9999999999996643 356999999998743
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.86 E-value=5.4e-06 Score=80.44 Aligned_cols=49 Identities=29% Similarity=0.750 Sum_probs=43.4
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
+.-.|.||.+-|.. ..++| |+|.||.-||..+|..+..||.|+..+.+.
T Consensus 22 ~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 34679999999887 56788 999999999999999999999999988765
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=1.2e-05 Score=77.92 Aligned_cols=52 Identities=25% Similarity=0.689 Sum_probs=38.4
Q ss_pred cCcccccccc-cccCCc-eeecCCCCccccHHHHHHHH-hcCCCCCcccCCCCCCC
Q 019053 124 IYGCVVCLNE-FQEQDM-LRVLPNCSHAFHLDCIDIWL-QSNANCPLCRTSISGTT 176 (347)
Q Consensus 124 ~~~C~ICl~~-~~~~~~-~~~lp~C~H~FH~~CI~~WL-~~~~tCPlCR~~i~~~~ 176 (347)
...|+||..+ |...+. +.+.+ |||.||..||+..+ .....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4579999996 334432 33334 99999999999955 44567999999887664
No 37
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=8.8e-06 Score=80.17 Aligned_cols=46 Identities=28% Similarity=0.886 Sum_probs=35.4
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhc---CCCCCcccC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS---NANCPLCRT 170 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~---~~tCPlCR~ 170 (347)
..|.||.+-+-....+.-+..|||+||..|+..|+.. +.+||+|+-
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 4799995544444455555569999999999999986 357999993
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=8.1e-06 Score=75.38 Aligned_cols=44 Identities=34% Similarity=0.856 Sum_probs=38.3
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT 170 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~ 170 (347)
+...|+||++.|... .++| |+|.||..||..|......||.||.
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 456899999999997 7788 9999999999999875566999993
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.78 E-value=4.7e-06 Score=63.99 Aligned_cols=49 Identities=33% Similarity=0.822 Sum_probs=23.3
Q ss_pred Ccccccccccc-cCCc-eeec--CCCCccccHHHHHHHHhc----C-------CCCCcccCCCC
Q 019053 125 YGCVVCLNEFQ-EQDM-LRVL--PNCSHAFHLDCIDIWLQS----N-------ANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~-~~~~-~~~l--p~C~H~FH~~CI~~WL~~----~-------~tCPlCR~~i~ 173 (347)
.+|.||++.+. .++. ..+- +.|++.||..||..||.. + -+||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 57999999876 3322 2222 269999999999999863 1 13999998874
No 40
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.77 E-value=1.3e-05 Score=76.52 Aligned_cols=49 Identities=27% Similarity=0.525 Sum_probs=40.9
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
.....|-||-+-|.. ...++ |||.||.-||...|..+..||+||.+.-.
T Consensus 23 Ds~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence 344679999888876 34555 99999999999999999999999987543
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.73 E-value=1e-05 Score=80.95 Aligned_cols=47 Identities=32% Similarity=0.872 Sum_probs=38.6
Q ss_pred cCcccccccccccCC-ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQD-MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
..+|+||||-+...- .++... |.|.||..|+..|- ..+||+||.-..
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 468999999997754 345555 99999999999994 578999998766
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=3.7e-05 Score=75.87 Aligned_cols=52 Identities=38% Similarity=0.903 Sum_probs=40.4
Q ss_pred ccCcccccccccccCC----ceeecCCCCccccHHHHHHHHh--c-----CCCCCcccCCCCC
Q 019053 123 SIYGCVVCLNEFQEQD----MLRVLPNCSHAFHLDCIDIWLQ--S-----NANCPLCRTSISG 174 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~CI~~WL~--~-----~~tCPlCR~~i~~ 174 (347)
.+.+|.||++...+.. ...+||+|.|.||..||+.|-+ . .+.||.||.....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 3578999999876643 1345678999999999999973 3 3679999987653
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.52 E-value=2.1e-05 Score=83.20 Aligned_cols=52 Identities=21% Similarity=0.443 Sum_probs=43.9
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 176 (347)
...|++|+..+.++......+ |+|+||..||+.|-..-.+||+||..+....
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 356999999888876666665 9999999999999999999999999776543
No 44
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=2.5e-05 Score=56.75 Aligned_cols=45 Identities=27% Similarity=0.587 Sum_probs=34.4
Q ss_pred CcccccccccccCCceeecCCCCcc-ccHHHHHH-HHhcCCCCCcccCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDI-WLQSNANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~-WL~~~~tCPlCR~~i~ 173 (347)
.+|.||++.-.+. +|..|||. .+.+|-.. |-..+..||+||++|.
T Consensus 8 dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 6899998875442 33459998 89999554 5557899999999875
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=6.7e-05 Score=74.53 Aligned_cols=49 Identities=31% Similarity=0.761 Sum_probs=37.3
Q ss_pred cCcccccccccccC-CceeecCCCCccccHHHHHHHHhc--CCCCCcccCCC
Q 019053 124 IYGCVVCLNEFQEQ-DMLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i 172 (347)
..+|+|||+.+... +...+.+.|||.|..+||+.||.. ...||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 46899999999854 444444469999999999999952 23499996644
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=5.6e-05 Score=73.87 Aligned_cols=51 Identities=29% Similarity=0.629 Sum_probs=41.9
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGTT 176 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~~ 176 (347)
.+..|.|||+-++. .+..+.|.|-||.+||..-+. .+++||-||+.+....
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 35679999999887 455667999999999999876 4788999999887543
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.22 E-value=0.00011 Score=70.54 Aligned_cols=52 Identities=33% Similarity=0.740 Sum_probs=43.1
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHh------------------c-----CCCCCcccCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ------------------S-----NANCPLCRTSISGTT 176 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~------------------~-----~~tCPlCR~~i~~~~ 176 (347)
...|.|||.-|.+++...+++ |-|.||..|+..+|. . ...||+||..|..+.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 367999999999999999998 999999999987762 1 125999999887553
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.14 E-value=9.3e-05 Score=55.70 Aligned_cols=45 Identities=29% Similarity=0.710 Sum_probs=22.7
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
-.|++|.+-+.+. ..+..|.|+|+..||..-+. .-||+|+.+.-.
T Consensus 8 LrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~ 52 (65)
T PF14835_consen 8 LRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI 52 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred cCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence 4599999988763 33445999999999988654 349999887643
No 49
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.14 E-value=0.00033 Score=69.57 Aligned_cols=51 Identities=29% Similarity=0.810 Sum_probs=41.5
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc--CCCCCcccCCCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSISGTTRY 178 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i~~~~~~ 178 (347)
..-|-||-+. +..+++-| |||..|..|+..|-.. .++||.||..|.....+
T Consensus 369 FeLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 369 FELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 3569999765 33488888 9999999999999744 57899999999876544
No 50
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0003 Score=67.58 Aligned_cols=48 Identities=29% Similarity=0.532 Sum_probs=38.4
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~ 175 (347)
..+|+||+....- ...|+ |+|.||.-||+--.+. ..+|++||.+|+..
T Consensus 7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 3579999887554 45676 9999999999986554 46699999999865
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0006 Score=68.65 Aligned_cols=52 Identities=37% Similarity=0.792 Sum_probs=43.3
Q ss_pred CCCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 119 GEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 119 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
....++.+|.||+..+.. ...+| |||.||..||+.-+....-||+||..+..
T Consensus 79 ~~~~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccccchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 334567899999888877 56678 99999999999977777779999999875
No 52
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00037 Score=61.49 Aligned_cols=41 Identities=24% Similarity=0.609 Sum_probs=33.9
Q ss_pred CceeeeccCCCCccCcccccccccccCCceeecCCCCccccH
Q 019053 111 PTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHL 152 (347)
Q Consensus 111 p~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~ 152 (347)
|.+.|+..-...+.-+|.||||+++.++.+..|| |-.+||+
T Consensus 164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 5566666544455678999999999999999999 9999996
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.00058 Score=72.64 Aligned_cols=49 Identities=22% Similarity=0.766 Sum_probs=37.9
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGTT 176 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~~ 176 (347)
.-.|++|-.-.++ + ++++|+|+||..||..-+.. +..||.|-+.+....
T Consensus 643 ~LkCs~Cn~R~Kd---~-vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---A-VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhh---H-HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 4579999866555 3 33469999999999999976 567999988876544
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.58 E-value=0.0012 Score=65.57 Aligned_cols=48 Identities=40% Similarity=0.817 Sum_probs=38.9
Q ss_pred CcccccccccccCC-ceeecCCCCccccHHHHHHHHhcC--CCCCcccCCCC
Q 019053 125 YGCVVCLNEFQEQD-MLRVLPNCSHAFHLDCIDIWLQSN--ANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~--~tCPlCR~~i~ 173 (347)
--|..|-+.+-.++ .+.-|| |.|+||..|+...|..+ .+||.||+-..
T Consensus 366 L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 45999988886544 577888 99999999999999776 46999995444
No 55
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.52 E-value=0.00098 Score=57.28 Aligned_cols=35 Identities=20% Similarity=0.535 Sum_probs=29.5
Q ss_pred cCcccccccccccCCceeecCCCC------ccccHHHHHHHH
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCS------HAFHLDCIDIWL 159 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~------H~FH~~CI~~WL 159 (347)
..+|+||++.+.+++.+..++ |+ |.||.+|+..|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 367999999999966677776 76 899999999994
No 56
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0019 Score=59.95 Aligned_cols=50 Identities=26% Similarity=0.635 Sum_probs=42.5
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhc--------CCCCCcccCCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--------NANCPLCRTSISGTT 176 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--------~~tCPlCR~~i~~~~ 176 (347)
..|..|-..+..+|.++.. |-|.||.+|+++|-.. ...||.|-.+|++..
T Consensus 51 pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 4699999999999988875 9999999999999643 235999999998764
No 57
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0065 Score=59.19 Aligned_cols=45 Identities=24% Similarity=0.459 Sum_probs=35.8
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCccc
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR 169 (347)
.+...|+||+....++-.+- .-|-+||..||-..+.++..||+=-
T Consensus 298 ~~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~ 342 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTG 342 (357)
T ss_pred CccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccC
Confidence 34578999999877753332 2699999999999999999999753
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.40 E-value=0.0017 Score=65.55 Aligned_cols=53 Identities=23% Similarity=0.636 Sum_probs=43.6
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYP 179 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~ 179 (347)
...|++|...+.+.-.. + .|||.||..|+..|+..+..||.|+..+.....++
T Consensus 21 ~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 46799999998875322 3 49999999999999999999999999887665443
No 59
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.34 E-value=0.0025 Score=71.47 Aligned_cols=66 Identities=26% Similarity=0.589 Sum_probs=47.8
Q ss_pred hcCCceeeeccCCC-CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----------CCCCcccCCCCC
Q 019053 108 RDIPTFQFKREGED-MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----------ANCPLCRTSISG 174 (347)
Q Consensus 108 ~~lp~~~~~~~~~~-~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----------~tCPlCR~~i~~ 174 (347)
.-||-+..++.... ..++.|.||+.+--.......|. |+|+||..|...-|+.. -+||+|+.+|.-
T Consensus 3469 ~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3469 HCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34666665554322 33578999988876666777886 99999999998766542 259999998864
No 60
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.27 E-value=0.0037 Score=46.12 Aligned_cols=41 Identities=27% Similarity=0.700 Sum_probs=27.4
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--CCCCc
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--ANCPL 167 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~tCPl 167 (347)
...|+|.+..|++. ++-. .|+|+|-.+.|..||+.+ ..||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 36799999999874 4444 499999999999999443 44998
No 61
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.14 E-value=0.0032 Score=44.62 Aligned_cols=40 Identities=30% Similarity=0.949 Sum_probs=27.2
Q ss_pred ccccccccccCCceeecCCCC-----ccccHHHHHHHHhc--CCCCCcc
Q 019053 127 CVVCLNEFQEQDMLRVLPNCS-----HAFHLDCIDIWLQS--NANCPLC 168 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~--~~tCPlC 168 (347)
|-||+++-.+++ ..+.| |+ -..|.+|+..|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999877766 34566 54 37899999999974 4569988
No 62
>PHA02862 5L protein; Provisional
Probab=95.37 E-value=0.013 Score=50.94 Aligned_cols=47 Identities=23% Similarity=0.660 Sum_probs=34.9
Q ss_pred CcccccccccccCCceeecCCCC-----ccccHHHHHHHHhc--CCCCCcccCCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCS-----HAFHLDCIDIWLQS--NANCPLCRTSISGTT 176 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~--~~tCPlCR~~i~~~~ 176 (347)
..|=||+++-+++ . -| |. ...|.+|+..|+.. +.+|++|+.+.....
T Consensus 3 diCWIC~~~~~e~--~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 3 DICWICNDVCDER--N--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CEEEEecCcCCCC--c--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 4699999985433 2 44 54 46999999999965 356999999876544
No 63
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.31 E-value=0.008 Score=54.86 Aligned_cols=46 Identities=22% Similarity=0.530 Sum_probs=38.3
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
...|.||-.+|+.. .++. |||.||..|...-++....|-+|-....
T Consensus 196 PF~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchhhc
Confidence 46799999999883 4554 9999999999998888899999966543
No 64
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.0091 Score=58.89 Aligned_cols=44 Identities=34% Similarity=0.640 Sum_probs=32.8
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
...|.||+++.++ ...+| |||+-+ |..--. ...+||+||..|..
T Consensus 305 p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~-~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 305 PDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSK-HLPQCPVCRQRIRL 348 (355)
T ss_pred CCceEEecCCccc---eeeec-CCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence 4679999999877 77888 999955 554432 23459999998754
No 65
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.19 E-value=0.0059 Score=59.53 Aligned_cols=51 Identities=25% Similarity=0.569 Sum_probs=41.3
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
+...+|.+|-.-|.+...+ . .|-|.||..||-..|....+||.|...|-..
T Consensus 13 n~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4457899998877764333 3 4999999999999999999999998877654
No 66
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.19 E-value=0.0098 Score=61.23 Aligned_cols=52 Identities=27% Similarity=0.608 Sum_probs=39.3
Q ss_pred CCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-----CCCCCcccCCCCCC
Q 019053 120 EDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-----NANCPLCRTSISGT 175 (347)
Q Consensus 120 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~tCPlCR~~i~~~ 175 (347)
+..+..+|.+|-+.-++ ..... |.|.||..||..+... +-+||.|...+.-.
T Consensus 532 enk~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 44556789999887555 44554 9999999999988753 46799998777644
No 67
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.18 E-value=0.01 Score=64.05 Aligned_cols=52 Identities=29% Similarity=0.777 Sum_probs=39.1
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC-------CCCCcccCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN-------ANCPLCRTSIS 173 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-------~tCPlCR~~i~ 173 (347)
.+..+|.||.+.+.....+---..|-|+||..||..|-.+. -.||-|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 44589999999998776554444588999999999997541 13999984433
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.011 Score=59.09 Aligned_cols=47 Identities=30% Similarity=0.785 Sum_probs=37.8
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--------CCCCcccC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--------ANCPLCRT 170 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--------~tCPlCR~ 170 (347)
....|.||+++..-......+| |+|+||..|+..++..+ -.||-|.-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4578999999977668888999 99999999999998542 24877644
No 69
>PHA03096 p28-like protein; Provisional
Probab=94.96 E-value=0.012 Score=56.87 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=33.6
Q ss_pred CcccccccccccCC----ceeecCCCCccccHHHHHHHHhcC---CCCCcccC
Q 019053 125 YGCVVCLNEFQEQD----MLRVLPNCSHAFHLDCIDIWLQSN---ANCPLCRT 170 (347)
Q Consensus 125 ~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~CI~~WL~~~---~tCPlCR~ 170 (347)
-+|.||++...... .-..|+.|.|.|+..||..|-... .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999987643 234677899999999999997542 33555533
No 70
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.71 E-value=0.031 Score=49.45 Aligned_cols=49 Identities=20% Similarity=0.634 Sum_probs=35.0
Q ss_pred ccCcccccccccccCCceeecC-CCCc---cccHHHHHHHHhcC--CCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLP-NCSH---AFHLDCIDIWLQSN--ANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp-~C~H---~FH~~CI~~WL~~~--~tCPlCR~~i~~~ 175 (347)
....|=||.++.. +.. -| .|.. ..|.+|+..|+... .+|++|+++....
T Consensus 7 ~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 3568999998853 222 35 2444 57999999999753 4599999877644
No 71
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.63 E-value=0.014 Score=47.12 Aligned_cols=31 Identities=32% Similarity=0.797 Sum_probs=25.6
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHH
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCID 156 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~ 156 (347)
...|++|-..+.. ....+.| |||+||..|++
T Consensus 78 ~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 4569999999987 4566677 99999999975
No 72
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.007 Score=58.19 Aligned_cols=44 Identities=25% Similarity=0.598 Sum_probs=33.9
Q ss_pred cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..-|+||++.-.+ ...|+ |||. -|.+|-... +.||+||+.|...
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~rv 344 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKRM----NECPICRQYIVRV 344 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhcccc----ccCchHHHHHHHH
Confidence 4569999887554 88998 9996 788895543 4799999977543
No 73
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.025 Score=55.79 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=40.2
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
.++..|+||...-- .....| |+|.-|..||.+-|...+.|=.|++.+..
T Consensus 420 sEd~lCpICyA~pi---~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI---NAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccc---hhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 44578999965432 356777 99999999999999999999999988764
No 74
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.03 Score=52.78 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=45.9
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|+||.+.+.+.-.+.+|..|||+|+.+|++..+.....||+|-.++...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 3679999999999888888888999999999999999999999997777543
No 75
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.038 Score=52.85 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=35.5
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhc--CCCCCcccCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSIS 173 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i~ 173 (347)
.+..+|++|-+.=... .... +|+|+||..||..=+.. ..+||.|-.++.
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCC--eeec-cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3457999997764332 3334 49999999999986653 367999977665
No 76
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.29 E-value=0.038 Score=53.40 Aligned_cols=48 Identities=29% Similarity=0.641 Sum_probs=35.8
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHH-hcCCCCCcc-cCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL-QSNANCPLC-RTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL-~~~~tCPlC-R~~i~~~ 175 (347)
..|+.|-.-+.+. ..+|.|+|.||.+||..-| .+...||.| |.+|...
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld 324 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD 324 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence 5699998777663 3346799999999999765 567789999 4455433
No 77
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.02 E-value=0.042 Score=39.19 Aligned_cols=44 Identities=30% Similarity=0.683 Sum_probs=21.9
Q ss_pred ccccccccccCCceeecC-CCCccccHHHHHHHHh-cCCCCCcccCC
Q 019053 127 CVVCLNEFQEQDMLRVLP-NCSHAFHLDCIDIWLQ-SNANCPLCRTS 171 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~WL~-~~~tCPlCR~~ 171 (347)
|++|.+++...+. .+.| .|++.++..|...-++ .+..||-||.+
T Consensus 1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 7899999944332 2334 3889999999888776 46779999976
No 78
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.0049 Score=61.24 Aligned_cols=50 Identities=20% Similarity=0.618 Sum_probs=43.9
Q ss_pred CcccccccccccC-CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQ-DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..|+||.+.++.. +++..+- |||.+|.+||.+||.+...||-|++.+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 5799999999887 6677775 999999999999999988899999988754
No 79
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.79 E-value=0.072 Score=52.49 Aligned_cols=65 Identities=23% Similarity=0.468 Sum_probs=45.2
Q ss_pred HHhcCCceeeecc-CCCCccCcccccccccccCCceeecCCCCccccHHHHHHH--HhcCCCCCcccCCCCC
Q 019053 106 VIRDIPTFQFKRE-GEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW--LQSNANCPLCRTSISG 174 (347)
Q Consensus 106 ~i~~lp~~~~~~~-~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W--L~~~~tCPlCR~~i~~ 174 (347)
.+..-|.+.-... +.+.+...|.||-+.+.- ..++| |+|..|--|--.. |...+.||+||+....
T Consensus 42 nlsaEPnlttsSaddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 42 NLSAEPNLTTSSADDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ccccCCccccccccccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 3444454443332 344455789999887665 67888 9999999997654 5667899999997654
No 80
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.65 E-value=0.038 Score=38.41 Aligned_cols=41 Identities=22% Similarity=0.651 Sum_probs=23.8
Q ss_pred ccccccccccCCceeecCCCCccccHHHHHHHHhcCC--CCCcc
Q 019053 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA--NCPLC 168 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~--tCPlC 168 (347)
|.+|.+....|...... .|+=.+|..|++.++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67787777776554333 3888999999999998765 69988
No 81
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.43 E-value=0.083 Score=50.37 Aligned_cols=51 Identities=20% Similarity=0.439 Sum_probs=39.1
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
.....|+|+..+|........+-.|||+|-..+|..-- ....||+|-.++.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 44578999999996555555554499999999999973 3567999966665
No 82
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.033 Score=53.72 Aligned_cols=46 Identities=26% Similarity=0.565 Sum_probs=38.7
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
+.|-||...|... +++. |+|.||..|...=++....|++|-+.+..
T Consensus 242 f~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccc---hhhc-CCceeehhhhccccccCCcceeccccccc
Confidence 5699999999884 4454 99999999999988888999999776543
No 83
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.08 E-value=0.032 Score=52.32 Aligned_cols=46 Identities=30% Similarity=0.608 Sum_probs=32.9
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
-|..|.-- ..++...++. |.|+||..|...-. ...||+||..|...
T Consensus 5 hCn~C~~~-~~~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRF-PSQDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRII 50 (233)
T ss_pred Eecccccc-CCCCceeeee-chhhhhhhhcccCC--ccccccccceeeee
Confidence 36666543 3366777776 99999999977632 23899999986544
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.071 Score=51.29 Aligned_cols=48 Identities=29% Similarity=0.776 Sum_probs=38.8
Q ss_pred cCcccccccccccCC---ceeecCCCCccccHHHHHHHHhcC-CCCCcccCCC
Q 019053 124 IYGCVVCLNEFQEQD---MLRVLPNCSHAFHLDCIDIWLQSN-ANCPLCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i 172 (347)
..+|.||-++|..++ ..+.|. |||.|+..|+..-+... ..||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 357999999999874 356665 99999999998877653 4599999986
No 85
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.071 Score=48.06 Aligned_cols=29 Identities=34% Similarity=1.026 Sum_probs=23.6
Q ss_pred CCCccccHHHHHHHHhc----C-------CCCCcccCCCC
Q 019053 145 NCSHAFHLDCIDIWLQS----N-------ANCPLCRTSIS 173 (347)
Q Consensus 145 ~C~H~FH~~CI~~WL~~----~-------~tCPlCR~~i~ 173 (347)
.||..||.-|+..||.. . ..||.|-.+|.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 49999999999999853 2 24999987775
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.06 E-value=0.076 Score=38.89 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=31.9
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..|..|... +..-.++| |+|+.+..|.+.| .-+-||+|-+++...
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 346555443 33356787 9999999998875 345699998888654
No 87
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.66 E-value=0.14 Score=49.38 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=40.3
Q ss_pred cCcccccccccccCCc-eeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDM-LRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|+||.+.+..... +..++ |||.-|..|+......+-+||+|.. +..+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGDM 208 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence 3459999998877654 55666 9999999999999888899999988 5433
No 88
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=90.28 E-value=0.32 Score=35.54 Aligned_cols=34 Identities=32% Similarity=0.730 Sum_probs=30.0
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHH
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI 157 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~ 157 (347)
...|.+|-+.|.+++.+.+-|.|+-.+|..|.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 3569999999998888999999999999999554
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.22 E-value=0.11 Score=55.92 Aligned_cols=47 Identities=32% Similarity=0.775 Sum_probs=36.9
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhc--CCCCCcccCCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSISGTT 176 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i~~~~ 176 (347)
..|.||++ .+...+.+ |+|.||..|+..-+.. ...||+||..+...+
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999999 34456666 9999999999987754 234999999887654
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.11 Score=50.44 Aligned_cols=44 Identities=32% Similarity=0.685 Sum_probs=29.8
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
-.|.-|=-.+. ---|++| |+|+||.+|... ..-+.||+|-..|.
T Consensus 91 HfCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 34766633322 2346778 999999999765 34568999976554
No 91
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.41 E-value=0.18 Score=54.82 Aligned_cols=40 Identities=23% Similarity=0.735 Sum_probs=30.4
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT 170 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~ 170 (347)
..|..|-..++-. ...- .|||.||.+|+. .....||-|+.
T Consensus 841 skCs~C~~~LdlP--~VhF-~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHF-LCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccc--eeee-ecccHHHHHhhc---cCcccCCccch
Confidence 5799998877654 2222 399999999998 44567999976
No 92
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.22 E-value=0.14 Score=57.88 Aligned_cols=46 Identities=26% Similarity=0.807 Sum_probs=38.0
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i 172 (347)
...|.||++.+.+...+. .|||.++..|+..|+..+..||.|+...
T Consensus 1153 ~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred ccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 457999999988543332 3999999999999999999999998543
No 93
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.93 E-value=0.23 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.882 Sum_probs=21.1
Q ss_pred CCCccccHHHHHHHHhcCCCCCc
Q 019053 145 NCSHAFHLDCIDIWLQSNANCPL 167 (347)
Q Consensus 145 ~C~H~FH~~CI~~WL~~~~tCPl 167 (347)
.|+|+-|..|.+.|+.....||-
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999974
No 94
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=0.16 Score=53.60 Aligned_cols=44 Identities=32% Similarity=0.675 Sum_probs=32.9
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTS 171 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~ 171 (347)
..|.||+..|......-+.+.|||..|.+|+..-. +.+|| |+.+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCcc
Confidence 46999999987765333333599999999998854 57899 7554
No 95
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.97 E-value=0.38 Score=48.06 Aligned_cols=27 Identities=33% Similarity=1.040 Sum_probs=20.3
Q ss_pred CCccccHHHHHHHHhcC-------------CCCCcccCCC
Q 019053 146 CSHAFHLDCIDIWLQSN-------------ANCPLCRTSI 172 (347)
Q Consensus 146 C~H~FH~~CI~~WL~~~-------------~tCPlCR~~i 172 (347)
|.-.+|.+|+.+|+.++ .+||.||+.+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 33457899999998543 2599999975
No 96
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=87.82 E-value=0.52 Score=37.85 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=28.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019053 28 QASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCC 66 (347)
Q Consensus 28 ~~~~~~s~~~~~ilviiil~il~~~~lli~~~~~~~r~c 66 (347)
.+.+++++..|..++.+++.+++++.++.+.|.+++|=|
T Consensus 24 ~~~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDl 62 (91)
T PF01708_consen 24 TAAPSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDL 62 (91)
T ss_pred CCCCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888888888888877777777776644
No 97
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.50 E-value=2.5 Score=42.59 Aligned_cols=46 Identities=22% Similarity=0.543 Sum_probs=39.7
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC---CCCcc
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA---NCPLC 168 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~---tCPlC 168 (347)
.+...|+|-.+.-.+......|. |||+...+-|....++.. .||.|
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred cceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 44578999999888888889998 999999999999887654 49999
No 98
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=86.10 E-value=0.69 Score=41.02 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=21.2
Q ss_pred cCcccccccccccCCceeecC-----------CCCc-cccHHHHHHHHh
Q 019053 124 IYGCVVCLNEFQEQDMLRVLP-----------NCSH-AFHLDCIDIWLQ 160 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp-----------~C~H-~FH~~CI~~WL~ 160 (347)
+..|+||||-=-+. .+|- -|+- .=|..|++.+-+
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 35799999875442 2222 1333 357899999853
No 99
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.72 E-value=0.43 Score=44.19 Aligned_cols=40 Identities=28% Similarity=0.672 Sum_probs=29.8
Q ss_pred ccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 127 CVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
|-.|-+. +..+.++| |.|. +|..|=.. -.+||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 7788554 44588999 9997 88999554 3569999887653
No 100
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=85.04 E-value=0.62 Score=50.64 Aligned_cols=54 Identities=26% Similarity=0.611 Sum_probs=39.8
Q ss_pred cCcccccccccccCCceeecC-CCC---ccccHHHHHHHHhcC--CCCCcccCCCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLP-NCS---HAFHLDCIDIWLQSN--ANCPLCRTSISGTTRY 178 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp-~C~---H~FH~~CI~~WL~~~--~tCPlCR~~i~~~~~~ 178 (347)
...|-||..+=..++.+-. | +|. ...|.+|+.+|+... ..|-+|+.++.-.+.+
T Consensus 12 ~~~CRICr~e~~~d~pLfh-PCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFH-PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred chhceeecCCCCCCCcCcc-cccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 4689999998777776543 4 233 358999999999754 3499999988765533
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=84.94 E-value=0.67 Score=45.77 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=36.9
Q ss_pred cCcccccccccccCCce-eecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDML-RVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGTT 176 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~~ 176 (347)
++-|+.|++++...|+- .-.| ||...|.-|....-+ -+..||-||+....+.
T Consensus 14 ed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 34599999999877753 3344 888877777554432 2567999999887665
No 102
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=84.47 E-value=0.8 Score=39.51 Aligned_cols=54 Identities=24% Similarity=0.612 Sum_probs=37.6
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHH-HHh--cCCCCCcccCCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI-WLQ--SNANCPLCRTSISGTT 176 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~-WL~--~~~tCPlCR~~i~~~~ 176 (347)
...+|.||.|.-.+..-+.--..||-..|..|-.. |-. .+..||+|++++...+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 46889999988665432222225898888887554 743 4678999999887554
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.50 E-value=0.89 Score=49.09 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=31.7
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCc
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPL 167 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPl 167 (347)
..|.+|-..+.. .....+.|+|.-|.+|+..|+..+.-||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 469999666543 23344579999999999999999888876
No 104
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.88 E-value=0.63 Score=44.61 Aligned_cols=51 Identities=27% Similarity=0.662 Sum_probs=37.2
Q ss_pred cCcccccccccccCCc-eeecCCCC-----ccccHHHHHHHHh--cCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDM-LRVLPNCS-----HAFHLDCIDIWLQ--SNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~-~~~lp~C~-----H~FH~~CI~~WL~--~~~tCPlCR~~i~~~ 175 (347)
...|=||.++...... ....| |. +..|..|++.|+. ....|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 3679999998765432 34555 64 5689999999997 455699998876554
No 105
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=82.86 E-value=0.51 Score=33.61 Aligned_cols=43 Identities=28% Similarity=0.754 Sum_probs=24.9
Q ss_pred cccccccccccCCceeecCCCC-ccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCS-HAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
.|--|+-+.+. +. +|+ |..+..|+...|.....||+|..++..
T Consensus 4 nCKsCWf~~k~---Li---~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKG---LI---KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SS---EE---E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcCCC---ee---eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 46667654332 22 375 999999999999999999999888753
No 106
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.75 E-value=0.76 Score=50.38 Aligned_cols=34 Identities=29% Similarity=0.627 Sum_probs=26.7
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHH
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL 159 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL 159 (347)
.+.|.+|.-.+.... -.+-| |||.||.+||..-.
T Consensus 817 ~d~C~~C~~~ll~~p-F~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKP-FYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ccchHHhcchhhcCc-ceeee-ccchHHHHHHHHHH
Confidence 568999988877653 34556 99999999998864
No 107
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=1.3 Score=46.55 Aligned_cols=45 Identities=36% Similarity=0.834 Sum_probs=38.0
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 176 (347)
...|.||+.+. ..+..+ |. |..|+..|+..+..||+|+..+....
T Consensus 479 ~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 46799999998 356666 88 99999999999999999998887654
No 108
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.40 E-value=1.1 Score=48.63 Aligned_cols=52 Identities=10% Similarity=0.173 Sum_probs=37.7
Q ss_pred Cccccccccccc---CCceeecCCCCccccHHHHHHHHhc------CCCCCcccCCCCCCC
Q 019053 125 YGCVVCLNEFQE---QDMLRVLPNCSHAFHLDCIDIWLQS------NANCPLCRTSISGTT 176 (347)
Q Consensus 125 ~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~CI~~WL~~------~~tCPlCR~~i~~~~ 176 (347)
..|.||.-++.. +-.+..+.+|+|.||..||..|+.. +-.|++|..-|....
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 567777777776 2233344469999999999999853 345899998887654
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.32 E-value=1.2 Score=44.91 Aligned_cols=38 Identities=34% Similarity=0.707 Sum_probs=28.3
Q ss_pred cCcccccccccccC-CceeecCCCCccccHHHHHHHHhcC
Q 019053 124 IYGCVVCLNEFQEQ-DMLRVLPNCSHAFHLDCIDIWLQSN 162 (347)
Q Consensus 124 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~WL~~~ 162 (347)
..+|.||..++... +...+. .|+|.||.+|+...++.+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhhh
Confidence 56899999555444 444444 599999999999988753
No 110
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=74.19 E-value=2.4 Score=41.53 Aligned_cols=48 Identities=25% Similarity=0.593 Sum_probs=35.1
Q ss_pred CCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 121 DMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 121 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..+..+|+||.+.+... +..-+ =||..|..|-. +..+.||.||.++..
T Consensus 45 ~~~lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP--IFQCD-NGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCccc--ceecC-CCcEehhhhhh---hhcccCCcccccccc
Confidence 34457899999998874 32222 37999999965 345679999999874
No 111
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.44 E-value=1.9 Score=41.13 Aligned_cols=49 Identities=24% Similarity=0.721 Sum_probs=33.5
Q ss_pred cCcccccccccccCCce-eecCCC-----CccccHHHHHHHHhcC--------CCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQDML-RVLPNC-----SHAFHLDCIDIWLQSN--------ANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~-~~lp~C-----~H~FH~~CI~~WL~~~--------~tCPlCR~~i~ 173 (347)
+-.|-||+..=+++... -+-| | .|-.|..|+..|+..+ -+||-|++.-.
T Consensus 20 eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 20 ERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 45699998875554322 2334 5 3789999999998432 14999988644
No 112
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=70.72 E-value=1.2 Score=47.93 Aligned_cols=47 Identities=32% Similarity=0.808 Sum_probs=36.0
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc---CCCCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS---NANCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~---~~tCPlCR~~i~~ 174 (347)
..+|.||+..+... ..+ +|.|.|+..|+..-+.. ...||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 35799999999886 333 59999999998875543 3459999976654
No 113
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=70.31 E-value=6.5 Score=33.51 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 40 ILAIAILSIMGTAFLLLSYYVFVS 63 (347)
Q Consensus 40 ilviiil~il~~~~lli~~~~~~~ 63 (347)
.++.|++|+++.++++++++.|++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHH
Confidence 455556677766666555444444
No 114
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=69.31 E-value=5.5 Score=42.61 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=24.6
Q ss_pred ccccccCCCccccccc-cCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 019053 10 NQGDQALAPIKSQEML-TNQASLSNSESAFPILAIAILSIMGTAFL 54 (347)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~ilviiil~il~~~~l 54 (347)
.|||.-.- +.+|.-. +..+...+-..+.|+++.+++.+++++|+
T Consensus 241 ~LGy~V~~-~~AqPv~~~a~P~~~s~~~NlWII~gVlvPv~vV~~I 285 (684)
T PF12877_consen 241 ILGYRVQG-IVAQPVEKQAEPPAKSPPNNLWIIAGVLVPVLVVLLI 285 (684)
T ss_pred hcCceecc-ccccccccccCCCCCCCCCCeEEEehHhHHHHHHHHH
Confidence 46776533 4455422 44555556667888777665555444333
No 115
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.64 E-value=2.7 Score=40.90 Aligned_cols=28 Identities=25% Similarity=0.720 Sum_probs=21.5
Q ss_pred CCccccHHHHHHHHhc-------------CCCCCcccCCCC
Q 019053 146 CSHAFHLDCIDIWLQS-------------NANCPLCRTSIS 173 (347)
Q Consensus 146 C~H~FH~~CI~~WL~~-------------~~tCPlCR~~i~ 173 (347)
|.-.+|..|+..|+.. +.+||.||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5567889999999743 347999998764
No 116
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=68.57 E-value=4.3 Score=39.37 Aligned_cols=50 Identities=22% Similarity=0.569 Sum_probs=34.5
Q ss_pred ccccccccc-ccCCceeecCCCCccccHHHHHHHHhcC-CCCCcccCCCCCC
Q 019053 126 GCVVCLNEF-QEQDMLRVLPNCSHAFHLDCIDIWLQSN-ANCPLCRTSISGT 175 (347)
Q Consensus 126 ~C~ICl~~~-~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i~~~ 175 (347)
.|++|-.+- .+.+.......|+|..|..|++..+..+ ..||-|-..+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 488887653 3444332333499999999999987654 5699997666544
No 117
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=66.73 E-value=4.1 Score=37.42 Aligned_cols=40 Identities=33% Similarity=0.791 Sum_probs=29.0
Q ss_pred cCcccccccc-----cccCCceeecCCCCccccHHHHHHHHhcCCCCCccc
Q 019053 124 IYGCVVCLNE-----FQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169 (347)
Q Consensus 124 ~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR 169 (347)
...|.||-++ |+. +.+..-+.|+-+||..|... ..||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 4679999753 222 34666678999999999762 6799993
No 118
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=65.87 E-value=17 Score=28.89 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.4
Q ss_pred CCCCHH
Q 019053 100 RGLDDS 105 (347)
Q Consensus 100 ~gl~~~ 105 (347)
.|-.++
T Consensus 58 ~Gd~Ee 63 (81)
T PF00558_consen 58 DGDEEE 63 (81)
T ss_dssp TTCCHH
T ss_pred CCcHHH
Confidence 344443
No 119
>PHA02650 hypothetical protein; Provisional
Probab=65.49 E-value=12 Score=29.40 Aligned_cols=9 Identities=11% Similarity=-0.127 Sum_probs=3.6
Q ss_pred chhHHHHHH
Q 019053 37 AFPILAIAI 45 (347)
Q Consensus 37 ~~~ilviii 45 (347)
.|..+++++
T Consensus 48 ~~~~~ii~i 56 (81)
T PHA02650 48 NGQNFIFLI 56 (81)
T ss_pred hHHHHHHHH
Confidence 344444433
No 120
>PHA02819 hypothetical protein; Provisional
Probab=62.93 E-value=16 Score=28.16 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=4.9
Q ss_pred chhHHHHHHHHH
Q 019053 37 AFPILAIAILSI 48 (347)
Q Consensus 37 ~~~ilviiil~i 48 (347)
.|+.++++++.+
T Consensus 45 ~~~~~ii~l~~~ 56 (71)
T PHA02819 45 LRYYLIIGLVTI 56 (71)
T ss_pred hHHHHHHHHHHH
Confidence 344444443333
No 121
>PHA02844 putative transmembrane protein; Provisional
Probab=62.83 E-value=11 Score=29.37 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=3.3
Q ss_pred chhHHHHH
Q 019053 37 AFPILAIA 44 (347)
Q Consensus 37 ~~~ilvii 44 (347)
.|..++|+
T Consensus 47 ~~~~~ii~ 54 (75)
T PHA02844 47 STKIWILT 54 (75)
T ss_pred hHHHHHHH
Confidence 34444443
No 122
>PHA02975 hypothetical protein; Provisional
Probab=62.25 E-value=18 Score=27.76 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=10.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Q 019053 34 SESAFPILAIAILSIMGTAFLLLSY 58 (347)
Q Consensus 34 s~~~~~ilviiil~il~~~~lli~~ 58 (347)
....|..++++++.++.+++++++|
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flY 64 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLY 64 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544444443333333333
No 123
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=62.22 E-value=3 Score=34.16 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 36 SAFPILAIAILSIMGTAFLLLSYYVFV 62 (347)
Q Consensus 36 ~~~~ilviiil~il~~~~lli~~~~~~ 62 (347)
..+.++++++++++++++++.++|+|+
T Consensus 59 ~~~~iili~lls~v~IlVily~IyYFV 85 (101)
T PF06024_consen 59 NNGNIILISLLSFVCILVILYAIYYFV 85 (101)
T ss_pred ccccchHHHHHHHHHHHHHHhhheEEE
Confidence 345566666666655555554444333
No 124
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=62.15 E-value=3.1 Score=44.11 Aligned_cols=41 Identities=27% Similarity=0.689 Sum_probs=25.8
Q ss_pred cCccccccc-----ccccCCceeecCCCCccccHHHHHHHHhcCCCCCcc
Q 019053 124 IYGCVVCLN-----EFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLC 168 (347)
Q Consensus 124 ~~~C~ICl~-----~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlC 168 (347)
...|.+|-. .|+ .+.++....|+++||..|+.. ....||-|
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 467888822 122 223333335999999999654 34449999
No 125
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=61.81 E-value=4.4 Score=37.68 Aligned_cols=43 Identities=26% Similarity=0.610 Sum_probs=34.6
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCccc
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR 169 (347)
...|.+|.+-.-.+..+ ..|+-.+|..|+...++....||.|-
T Consensus 181 lk~Cn~Ch~LvIqg~rC---g~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRC---GSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhheeecc---CcccchhhhHHHHHHhcccCcCCchh
Confidence 46799998877665322 24888899999999999989999993
No 126
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.90 E-value=12 Score=38.41 Aligned_cols=37 Identities=22% Similarity=0.507 Sum_probs=29.8
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhc
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS 161 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~ 161 (347)
....+|-||.+.+.. .+..+. |+|.|+..|+...+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 334679999999876 455565 9999999999999864
No 127
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=59.33 E-value=8.2 Score=24.58 Aligned_cols=37 Identities=16% Similarity=0.558 Sum_probs=25.5
Q ss_pred ccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
|..|-..+..++..... =+..||.+| ..|..|...|.
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcCc
Confidence 78888887776333222 468899888 67888877663
No 128
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=58.30 E-value=4.3 Score=38.48 Aligned_cols=49 Identities=27% Similarity=0.597 Sum_probs=35.4
Q ss_pred cCcccccccccc-cCC-ceeecCCCCccccHHHHHHHHhcC-CCCC--cccCCC
Q 019053 124 IYGCVVCLNEFQ-EQD-MLRVLPNCSHAFHLDCIDIWLQSN-ANCP--LCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~-~~~-~~~~lp~C~H~FH~~CI~~WL~~~-~tCP--lCR~~i 172 (347)
+..|+||..+-- +.+ ++.+-|-|-|..|..|++..+... ..|| -|-.-+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 457999987743 333 344556699999999999988664 5699 785433
No 129
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=56.74 E-value=28 Score=28.72 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=12.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHH
Q 019053 32 SNSESAFPILAIAILSIMGTAFL 54 (347)
Q Consensus 32 ~~s~~~~~ilviiil~il~~~~l 54 (347)
.....+|+.++-++++.+++.+|
T Consensus 11 ~~~g~sW~~LVGVv~~al~~SlL 33 (102)
T PF15176_consen 11 GEGGRSWPFLVGVVVTALVTSLL 33 (102)
T ss_pred CCCCcccHhHHHHHHHHHHHHHH
Confidence 44467788776555554444333
No 131
>PHA03054 IMV membrane protein; Provisional
Probab=56.69 E-value=21 Score=27.53 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=4.2
Q ss_pred chhHHHHHHH
Q 019053 37 AFPILAIAIL 46 (347)
Q Consensus 37 ~~~ilviiil 46 (347)
.|..++++++
T Consensus 47 ~~~~~ii~l~ 56 (72)
T PHA03054 47 GWYWLIIIFF 56 (72)
T ss_pred hHHHHHHHHH
Confidence 3444444433
No 132
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.46 E-value=4.4 Score=44.19 Aligned_cols=42 Identities=26% Similarity=0.582 Sum_probs=31.4
Q ss_pred CcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcc
Q 019053 125 YGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLC 168 (347)
Q Consensus 125 ~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlC 168 (347)
..|.-|.+..... +.+.++. |+|+||..|+..-...++ |-.|
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 4699998877632 3566775 999999999998776555 6555
No 133
>PLN02189 cellulose synthase
Probab=56.11 E-value=12 Score=42.34 Aligned_cols=54 Identities=20% Similarity=0.461 Sum_probs=37.3
Q ss_pred cCcccccccccc---cCCceeecCCCCccccHHHHHHH-HhcCCCCCcccCCCCCCCC
Q 019053 124 IYGCVVCLNEFQ---EQDMLRVLPNCSHAFHLDCIDIW-LQSNANCPLCRTSISGTTR 177 (347)
Q Consensus 124 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~CI~~W-L~~~~tCPlCR~~i~~~~~ 177 (347)
...|.||-+++. +|+.-.....|+--.|..|.+-= -..++.||-|++.-...++
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kg 91 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKG 91 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccC
Confidence 457999999975 33433333347777999999542 2356789999998875553
No 134
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=55.50 E-value=9.3 Score=27.62 Aligned_cols=42 Identities=31% Similarity=0.845 Sum_probs=21.5
Q ss_pred ccccccccccCC------ceeecCCCCccccHHHHHHHH-hcCCCCCccc
Q 019053 127 CVVCLNEFQEQD------MLRVLPNCSHAFHLDCIDIWL-QSNANCPLCR 169 (347)
Q Consensus 127 C~ICl~~~~~~~------~~~~lp~C~H~FH~~CI~~WL-~~~~tCPlCR 169 (347)
|--|+..|.... ....-|+|++.|+.+| |..+ ++=.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 555666666542 3456678999999999 4443 2234699883
No 135
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=52.87 E-value=24 Score=27.33 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=5.3
Q ss_pred chhHHHHHHHHHH
Q 019053 37 AFPILAIAILSIM 49 (347)
Q Consensus 37 ~~~ilviiil~il 49 (347)
+|.++++.++.++
T Consensus 47 ~~~~~ii~ii~v~ 59 (72)
T PF12575_consen 47 NWIILIISIIFVL 59 (72)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444443333
No 136
>PLN02400 cellulose synthase
Probab=52.60 E-value=12 Score=42.44 Aligned_cols=54 Identities=17% Similarity=0.396 Sum_probs=35.9
Q ss_pred cCccccccccccc---CCceeecCCCCccccHHHHHH-HHhcCCCCCcccCCCCCCCC
Q 019053 124 IYGCVVCLNEFQE---QDMLRVLPNCSHAFHLDCIDI-WLQSNANCPLCRTSISGTTR 177 (347)
Q Consensus 124 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~CI~~-WL~~~~tCPlCR~~i~~~~~ 177 (347)
...|.||-+++.. |+.-...-.|+--.|..|.+- .-..++.||-|++.-...++
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~Kg 93 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKG 93 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccC
Confidence 4579999999753 332222223556699999853 23457789999998876553
No 137
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=51.63 E-value=16 Score=26.01 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=18.0
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhcC-----CCCCcccCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN-----ANCPLCRTS 171 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-----~tCPlCR~~ 171 (347)
.|+|....+.. .+|-.. |.|.-+.+ ++.||..+ -.||+|.++
T Consensus 4 ~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 47777766655 255554 88883322 34466432 249999753
No 138
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=51.62 E-value=10 Score=26.74 Aligned_cols=39 Identities=15% Similarity=0.501 Sum_probs=27.6
Q ss_pred ccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
|+-|-..+..++.+... -+..||.+| .+|-.|...|...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 67777777765544322 678899888 6788898887654
No 139
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=51.52 E-value=37 Score=23.09 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019053 39 PILAIAILSIMGTAFLLLSYYVFVSKCCN 67 (347)
Q Consensus 39 ~ilviiil~il~~~~lli~~~~~~~r~c~ 67 (347)
.+++.+++ .++++++++++|.++.|.-+
T Consensus 7 aIIv~V~v-g~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 7 AIIVAVVV-GMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHcccc
Confidence 33333333 33455555666666665443
No 140
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.35 E-value=14 Score=35.31 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=35.8
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
....|+|---+|.....-..+-.|||+|-..-+.+.- ..+|++|-+...
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~ 158 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQ 158 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccc
Confidence 3478999888877655544444599999998888753 578999966554
No 141
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=50.87 E-value=9.3 Score=36.76 Aligned_cols=49 Identities=33% Similarity=0.681 Sum_probs=35.1
Q ss_pred CcccccccccccCCceeec---CCCCccccHHHHHHHH-hc--------CCCCCcccCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVL---PNCSHAFHLDCIDIWL-QS--------NANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~l---p~C~H~FH~~CI~~WL-~~--------~~tCPlCR~~i~ 173 (347)
.+|.+|..++.+.+..+.. +.|.-.+|..|+..-+ .. ...||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 5899999999655554432 3578889999999943 22 235999988543
No 142
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.20 E-value=20 Score=30.16 Aligned_cols=45 Identities=27% Similarity=0.456 Sum_probs=32.8
Q ss_pred CcccccccccccCC----------ceeecCCCCccccHHHHHHHHhcCCCCCccc
Q 019053 125 YGCVVCLNEFQEQD----------MLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169 (347)
Q Consensus 125 ~~C~ICl~~~~~~~----------~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR 169 (347)
..|--|+..|.... ....-++|++.|+.+|=.-|-+.=.+||-|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999886531 1233567999999999666656556799995
No 143
>PF15102 TMEM154: TMEM154 protein family
Probab=50.19 E-value=6 Score=34.74 Aligned_cols=9 Identities=33% Similarity=0.925 Sum_probs=5.9
Q ss_pred HHHHHHHhc
Q 019053 153 DCIDIWLQS 161 (347)
Q Consensus 153 ~CI~~WL~~ 161 (347)
.=|++|+.+
T Consensus 128 eeldkwm~s 136 (146)
T PF15102_consen 128 EELDKWMNS 136 (146)
T ss_pred HHHHhHHHh
Confidence 347888754
No 144
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=50.01 E-value=19 Score=26.59 Aligned_cols=43 Identities=28% Similarity=0.702 Sum_probs=32.1
Q ss_pred cccccccccccCC-ceeecCCCCc--cccHHHHHHHHhcCCCCCcccCCCC
Q 019053 126 GCVVCLNEFQEQD-MLRVLPNCSH--AFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 126 ~C~ICl~~~~~~~-~~~~lp~C~H--~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
.|-.|-.++..+. ...+ |.+ .|+.+|.+.-| +..||.|-..+.
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 4777877777665 3333 765 59999999987 678999977765
No 145
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=49.87 E-value=32 Score=32.43 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019053 40 ILAIAILSIMGTAFLLLSYY 59 (347)
Q Consensus 40 ilviiil~il~~~~lli~~~ 59 (347)
.++|++|.|.+.+|+|+.+|
T Consensus 192 pvvIaliVitl~vf~LvgLy 211 (259)
T PF07010_consen 192 PVVIALIVITLSVFTLVGLY 211 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555554444
No 146
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=49.11 E-value=18 Score=41.18 Aligned_cols=54 Identities=17% Similarity=0.397 Sum_probs=36.1
Q ss_pred cCccccccccccc---CCceeecCCCCccccHHHHHH-HHhcCCCCCcccCCCCCCCC
Q 019053 124 IYGCVVCLNEFQE---QDMLRVLPNCSHAFHLDCIDI-WLQSNANCPLCRTSISGTTR 177 (347)
Q Consensus 124 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~CI~~-WL~~~~tCPlCR~~i~~~~~ 177 (347)
...|.||-+++.. |+.-.....|+--.|..|.+= .-+.++.||-|++.-...++
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kg 74 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKG 74 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcC
Confidence 4579999999753 332222223566699999853 23457889999998875543
No 147
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=47.94 E-value=49 Score=28.05 Aligned_cols=20 Identities=10% Similarity=0.381 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 019053 50 GTAFLLLSYYVFVSKCCNNW 69 (347)
Q Consensus 50 ~~~~lli~~~~~~~r~c~~~ 69 (347)
++++..+....++.|||++|
T Consensus 95 aL~LaamGA~~LLrR~cRr~ 114 (126)
T PF03229_consen 95 ALTLAAMGAGALLRRCCRRA 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444455667788765
No 148
>PLN02436 cellulose synthase A
Probab=46.93 E-value=20 Score=40.70 Aligned_cols=54 Identities=19% Similarity=0.453 Sum_probs=36.5
Q ss_pred cCcccccccccc---cCCceeecCCCCccccHHHHHHHH-hcCCCCCcccCCCCCCCC
Q 019053 124 IYGCVVCLNEFQ---EQDMLRVLPNCSHAFHLDCIDIWL-QSNANCPLCRTSISGTTR 177 (347)
Q Consensus 124 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~CI~~WL-~~~~tCPlCR~~i~~~~~ 177 (347)
...|.||-+++. +|+.-.....|+--.|..|.+-=- ..++.||-|++.-...+.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kg 93 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKG 93 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccC
Confidence 457999999973 344333333466669999995422 346789999998875553
No 149
>PHA02692 hypothetical protein; Provisional
Probab=45.77 E-value=44 Score=25.76 Aligned_cols=9 Identities=0% Similarity=0.146 Sum_probs=3.8
Q ss_pred CchhHHHHH
Q 019053 36 SAFPILAIA 44 (347)
Q Consensus 36 ~~~~ilvii 44 (347)
..|..++++
T Consensus 43 ~~~~~~ii~ 51 (70)
T PHA02692 43 VPWTTVFLI 51 (70)
T ss_pred cchHHHHHH
Confidence 334444443
No 150
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=45.32 E-value=9.5 Score=26.50 Aligned_cols=42 Identities=26% Similarity=0.626 Sum_probs=27.7
Q ss_pred ccccccccccCCceeecCCCCccccHHHHHHHHh------cCCCCCccc
Q 019053 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ------SNANCPLCR 169 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~------~~~tCPlCR 169 (347)
|.||......++ +..-..|+-.||..|+..=.. ..-.||.|+
T Consensus 2 C~vC~~~~~~~~-~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDGD-MIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTSS-EEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCCC-eEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 889988444444 444446999999999876432 133588775
No 151
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=44.72 E-value=11 Score=38.66 Aligned_cols=31 Identities=35% Similarity=0.691 Sum_probs=25.9
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHH
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL 159 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL 159 (347)
..|+||..-|++ ..+|| |+|..|..|...-+
T Consensus 5 lkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 5 LKCPVCGSFYRE---PIILP-CSHNLCQACARNIL 35 (699)
T ss_pred ccCceehhhccC---ceEee-cccHHHHHHHHhhc
Confidence 469999999887 67888 99999999977543
No 152
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=43.69 E-value=13 Score=23.10 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=9.6
Q ss_pred ccccccccccCCceeecCCCCccc
Q 019053 127 CVVCLNEFQEQDMLRVLPNCSHAF 150 (347)
Q Consensus 127 C~ICl~~~~~~~~~~~lp~C~H~F 150 (347)
|+-|-.++... .+.-|.|||.|
T Consensus 3 CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhh--cCcCCCCCCCC
Confidence 55554444332 22333455554
No 153
>PRK14710 hypothetical protein; Provisional
Probab=43.44 E-value=19 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.392 Sum_probs=19.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 36 SAFPILAIAILSIMGTAFLLLSYYVFV 62 (347)
Q Consensus 36 ~~~~ilviiil~il~~~~lli~~~~~~ 62 (347)
.+...++|++.+|+..++++++-|+++
T Consensus 6 sn~skm~ififaiii~v~lcv~tylyl 32 (86)
T PRK14710 6 SNLSKMIIFIFAIIIIVVLCVITYLYL 32 (86)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhheee
Confidence 456677787888888888877776543
No 154
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=42.06 E-value=83 Score=31.25 Aligned_cols=46 Identities=22% Similarity=0.527 Sum_probs=36.4
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC---CCCCcc
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN---ANCPLC 168 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~---~tCPlC 168 (347)
.+...|++--+.-.+......|. |||+.-.+-++..-+.. ..||.|
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred cceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 34578999888877777788887 99999999998876543 349999
No 155
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=41.87 E-value=65 Score=21.30 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019053 40 ILAIAILSIMGTAFLLLSY 58 (347)
Q Consensus 40 ilviiil~il~~~~lli~~ 58 (347)
.-.+++++++.+.++.+++
T Consensus 6 ~Gal~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 6 KGALGVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeHHHHHHHHHHHHH
Confidence 3334444444444443333
No 156
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=41.67 E-value=23 Score=34.99 Aligned_cols=52 Identities=25% Similarity=0.523 Sum_probs=35.9
Q ss_pred cCccccccccccc---------------CC-ceeecCCCCccccHHHHHHHHhc---------CCCCCcccCCCCCCC
Q 019053 124 IYGCVVCLNEFQE---------------QD-MLRVLPNCSHAFHLDCIDIWLQS---------NANCPLCRTSISGTT 176 (347)
Q Consensus 124 ~~~C~ICl~~~~~---------------~~-~~~~lp~C~H~FH~~CI~~WL~~---------~~tCPlCR~~i~~~~ 176 (347)
.-+|++|+..=.- +- .....| |||+--.+=..-|-+. +..||.|-+.+..+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 5689999875210 10 123456 9999888888889753 345999988887654
No 157
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.37 E-value=14 Score=37.34 Aligned_cols=70 Identities=17% Similarity=0.366 Sum_probs=44.5
Q ss_pred cCCCCCHHHHhcCCceeeeccCC----CCccCcccccccccccCC--ceeecCCCCccccHHHHHHHHhcCCCCCcc
Q 019053 98 WNRGLDDSVIRDIPTFQFKREGE----DMSIYGCVVCLNEFQEQD--MLRVLPNCSHAFHLDCIDIWLQSNANCPLC 168 (347)
Q Consensus 98 ~~~gl~~~~i~~lp~~~~~~~~~----~~~~~~C~ICl~~~~~~~--~~~~lp~C~H~FH~~CI~~WL~~~~tCPlC 168 (347)
+..+++=+..+++..-.+..... ...--.|+.|.-.++-.+ ....-. |+|.|+..|...|...+..|..|
T Consensus 276 wh~~~sC~eykk~~~~~~~d~~~~~~la~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 276 WHANLSCEEYKKLNPEEYVDDITLKYLAKRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CCCCCCHHHHHHhCCcccccHHHHHHHHHhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 44456666666665544433210 122346888877665443 344555 89999999999998887777665
No 158
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=40.16 E-value=37 Score=26.74 Aligned_cols=54 Identities=17% Similarity=0.389 Sum_probs=20.8
Q ss_pred cCcccccccccccC---CceeecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQ---DMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGTTR 177 (347)
Q Consensus 124 ~~~C~ICl~~~~~~---~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~~~ 177 (347)
...|.||-+++-.. +.-...-.|+--.+..|.+-=.+ .++.||-|++.....++
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kg 66 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKG 66 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccC
Confidence 46799999887543 32222223666688999876543 56789999988776554
No 159
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.70 E-value=20 Score=35.42 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=36.0
Q ss_pred CcccccccccccCCceeecC-CCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLP-NCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
..|+||-+.....+.. .+| .|++..|..|...-...+..||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCccc
Confidence 6799999988554433 233 38888888888888888899999995443
No 160
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=37.63 E-value=45 Score=23.88 Aligned_cols=23 Identities=9% Similarity=0.434 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhccccch
Q 019053 50 GTAFLLLSYYVFVSKCCNNWHLI 72 (347)
Q Consensus 50 ~~~~lli~~~~~~~r~c~~~~~~ 72 (347)
+++++.+.||+-..+||+..+|.
T Consensus 10 li~lv~~gy~~hmkrycrafrqd 32 (54)
T PF13260_consen 10 LIVLVVVGYFCHMKRYCRAFRQD 32 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455677888889999877664
No 161
>PF15018 InaF-motif: TRP-interacting helix
Probab=37.61 E-value=40 Score=22.93 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 019053 39 PILAIAILSIMGTAFLLLSYYVF 61 (347)
Q Consensus 39 ~ilviiil~il~~~~lli~~~~~ 61 (347)
..++.-++++.+.++++.+||++
T Consensus 8 ~tV~~Yl~~VSl~Ai~LsiYY~f 30 (38)
T PF15018_consen 8 LTVVAYLFSVSLAAIVLSIYYIF 30 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhe
Confidence 45566677787888888888865
No 162
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=37.19 E-value=16 Score=27.07 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=19.0
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHH
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL 159 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL 159 (347)
+...|.+|...|.--..-..-..||++|+..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3467999999997644433444699999999976543
No 163
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=36.78 E-value=33 Score=34.10 Aligned_cols=47 Identities=30% Similarity=0.576 Sum_probs=31.4
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT 170 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~ 170 (347)
....|-.|.++.......+- +.|.+.||.+|=.---.+=..||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C-~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRC-ESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEc-hhccceeeccchHHHHhhhhcCCCcCC
Confidence 34559999777766555443 459999999993322233356999963
No 164
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=36.35 E-value=47 Score=27.41 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 019053 39 PILAIAILSIMGTAFLLLSYYVFVSKCCNNWH 70 (347)
Q Consensus 39 ~ilviiil~il~~~~lli~~~~~~~r~c~~~~ 70 (347)
..-+-+++|++++++++-+++++.+|| ..|+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC-~~~~ 44 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKC-PVWY 44 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHh-HHHH
Confidence 345667888888888877777777765 3343
No 165
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=36.14 E-value=25 Score=28.07 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 019053 38 FPILAIAILSIMGTAFLLLSYYVFVSKCCNNWH 70 (347)
Q Consensus 38 ~~ilviiil~il~~~~lli~~~~~~~r~c~~~~ 70 (347)
++.+++.||+..++.++++.+.+.+.-||.+++
T Consensus 12 lp~~~yyiiA~gga~llL~~v~l~vvL~C~r~~ 44 (87)
T PF11980_consen 12 LPPYWYYIIAMGGALLLLVAVCLGVVLYCHRFH 44 (87)
T ss_pred CCceeeHHHhhccHHHHHHHHHHHHHHhhhhhc
Confidence 556666666666666666666656666666554
No 166
>PRK00523 hypothetical protein; Provisional
Probab=35.97 E-value=73 Score=24.73 Aligned_cols=19 Identities=16% Similarity=-0.185 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019053 43 IAILSIMGTAFLLLSYYVF 61 (347)
Q Consensus 43 iiil~il~~~~lli~~~~~ 61 (347)
.++++|+++++-+++-+++
T Consensus 7 ~I~l~i~~li~G~~~Gffi 25 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444433444433
No 167
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.60 E-value=43 Score=32.66 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019053 41 LAIAILSIMGTAFLLLSYYVFV 62 (347)
Q Consensus 41 lviiil~il~~~~lli~~~~~~ 62 (347)
.-|+.+.+++++++|+++|+++
T Consensus 261 cgiaalvllil~vvliiLYiWl 282 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWL 282 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 168
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=33.81 E-value=87 Score=24.31 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=16.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHH
Q 019053 33 NSESAFPILAIAILSIMGTAFLLLSYY 59 (347)
Q Consensus 33 ~s~~~~~ilviiil~il~~~~lli~~~ 59 (347)
.+...+...++++++++++++++++.+
T Consensus 40 ~~~~~~~~~~~~ii~ii~v~ii~~l~f 66 (72)
T PF12575_consen 40 NKNNKNFNWIILIISIIFVLIIVLLTF 66 (72)
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 444567667777776666666555533
No 169
>PF15102 TMEM154: TMEM154 protein family
Probab=33.70 E-value=11 Score=33.19 Aligned_cols=6 Identities=33% Similarity=0.540 Sum_probs=2.8
Q ss_pred CCCCch
Q 019053 33 NSESAF 38 (347)
Q Consensus 33 ~s~~~~ 38 (347)
.+...|
T Consensus 52 ~~q~ef 57 (146)
T PF15102_consen 52 SSQLEF 57 (146)
T ss_pred CCCcce
Confidence 344455
No 170
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=33.66 E-value=13 Score=26.68 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=6.3
Q ss_pred CCCcccCCCCCC
Q 019053 164 NCPLCRTSISGT 175 (347)
Q Consensus 164 tCPlCR~~i~~~ 175 (347)
.||+|.+++...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799999888643
No 171
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=33.53 E-value=19 Score=33.69 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019053 41 LAIAILSIMGTAFLLLSYYVFVSKCCN 67 (347)
Q Consensus 41 lviiil~il~~~~lli~~~~~~~r~c~ 67 (347)
++|++|+-.++++|+++ +..+.|||+
T Consensus 39 I~iaiVAG~~tVILVI~-i~v~vR~CR 64 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIF-IVVLVRYCR 64 (221)
T ss_pred eeeeeecchhhhHHHHH-HHHHHHHHh
Confidence 33333333333333333 334457665
No 172
>PRK01844 hypothetical protein; Provisional
Probab=33.39 E-value=83 Score=24.42 Aligned_cols=15 Identities=0% Similarity=-0.033 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 019053 47 SIMGTAFLLLSYYVF 61 (347)
Q Consensus 47 ~il~~~~lli~~~~~ 61 (347)
+|+++++-+++-+++
T Consensus 10 ~I~~li~G~~~Gff~ 24 (72)
T PRK01844 10 GVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 173
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.94 E-value=81 Score=30.94 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 019053 45 ILSIMGTAFLLLSYY 59 (347)
Q Consensus 45 il~il~~~~lli~~~ 59 (347)
+++|++.+++++++|
T Consensus 262 iiaIliIVLIMvIIY 276 (299)
T PF02009_consen 262 IIAILIIVLIMVIIY 276 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 174
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=32.83 E-value=26 Score=23.24 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=15.2
Q ss_pred cccccccccccCCc-------eeecCCCCcccc
Q 019053 126 GCVVCLNEFQEQDM-------LRVLPNCSHAFH 151 (347)
Q Consensus 126 ~C~ICl~~~~~~~~-------~~~lp~C~H~FH 151 (347)
.|+-|-..|.-.+. ...-+.|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57777777765442 223345777764
No 175
>PTZ00370 STEVOR; Provisional
Probab=32.79 E-value=43 Score=32.69 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019053 41 LAIAILSIMGTAFLLLSYYVFV 62 (347)
Q Consensus 41 lviiil~il~~~~lli~~~~~~ 62 (347)
.-|+.+.+++++++++++|+++
T Consensus 257 ygiaalvllil~vvliilYiwl 278 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWL 278 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 176
>PF15050 SCIMP: SCIMP protein
Probab=32.35 E-value=86 Score=26.80 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=8.2
Q ss_pred CchhHHHHHHHHHHHH
Q 019053 36 SAFPILAIAILSIMGT 51 (347)
Q Consensus 36 ~~~~ilviiil~il~~ 51 (347)
.+||+++.+.|.++.+
T Consensus 6 ~nFWiiLAVaII~vS~ 21 (133)
T PF15050_consen 6 DNFWIILAVAIILVSV 21 (133)
T ss_pred hchHHHHHHHHHHHHH
Confidence 4577666544433333
No 177
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=32.09 E-value=28 Score=26.57 Aligned_cols=12 Identities=25% Similarity=0.960 Sum_probs=8.7
Q ss_pred cccHHHHHHHHh
Q 019053 149 AFHLDCIDIWLQ 160 (347)
Q Consensus 149 ~FH~~CI~~WL~ 160 (347)
-||..|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 178
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=31.99 E-value=28 Score=23.03 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=15.0
Q ss_pred cccccccccccCCc-------eeecCCCCcccc
Q 019053 126 GCVVCLNEFQEQDM-------LRVLPNCSHAFH 151 (347)
Q Consensus 126 ~C~ICl~~~~~~~~-------~~~lp~C~H~FH 151 (347)
+|+=|...|.-++. ...-++|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57777777765543 122335777764
No 179
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=31.79 E-value=22 Score=29.00 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=24.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019053 35 ESAFPILAIAILSIMGTAFLLLSYYVFVSKCCN 67 (347)
Q Consensus 35 ~~~~~ilviiil~il~~~~lli~~~~~~~r~c~ 67 (347)
........++++++++++.+++++|+++..-..
T Consensus 55 ~~~~~~~~iili~lls~v~IlVily~IyYFVIL 87 (101)
T PF06024_consen 55 ASKQNNGNIILISLLSFVCILVILYAIYYFVIL 87 (101)
T ss_pred ccccccccchHHHHHHHHHHHHHHhhheEEEEE
Confidence 346777888888888888888888877654433
No 180
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=31.74 E-value=1e+02 Score=23.65 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=11.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 019053 37 AFPILAIAILSIMGTAFLLLSYY 59 (347)
Q Consensus 37 ~~~ilviiil~il~~~~lli~~~ 59 (347)
.-...+++++|+++.+++-+++.
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLA 77 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556555555544444
No 181
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=30.51 E-value=84 Score=27.76 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 019053 43 IAILSIM 49 (347)
Q Consensus 43 iiil~il 49 (347)
+|+|+|+
T Consensus 33 tILiaIv 39 (189)
T PF05568_consen 33 TILIAIV 39 (189)
T ss_pred HHHHHHH
Confidence 3344443
No 182
>PHA02819 hypothetical protein; Provisional
Probab=30.48 E-value=1.3e+02 Score=23.17 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=16.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 34 SESAFPILAIAILSIMGTAFLLLSYYVFVSK 64 (347)
Q Consensus 34 s~~~~~ilviiil~il~~~~lli~~~~~~~r 64 (347)
.........++++.++++++ ++++.+++.|
T Consensus 39 ~~~~~~~~~~~ii~l~~~~~-~~~~~flYLK 68 (71)
T PHA02819 39 KTKKSFLRYYLIIGLVTIVF-VIIFIIFYLK 68 (71)
T ss_pred cccCChhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44557777777766544444 4444444444
No 183
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.01 E-value=38 Score=32.43 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=28.3
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHh
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ 160 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~ 160 (347)
.+...|+.||..+.+ ..+.| =||+|+.+||-+++.
T Consensus 41 K~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccC---CccCC-CCeeeeHHHHHHHHH
Confidence 445679999999887 45666 799999999999863
No 184
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=28.78 E-value=41 Score=23.73 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=24.4
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHH
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL 159 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL 159 (347)
..|.+|-..|.....-..-..||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46889988877644333334599999999976553
No 185
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=28.72 E-value=1.8e+02 Score=19.28 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 40 ILAIAILSIMGTAFLLLSYYVFVSK 64 (347)
Q Consensus 40 ilviiil~il~~~~lli~~~~~~~r 64 (347)
..++.++++.+.+|=+..|++++.|
T Consensus 9 l~vv~iLt~~ILvFWfgvf~~fl~R 33 (34)
T PF08113_consen 9 LGVVMILTAFILVFWFGVFALFLAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeHHHHHHHHHHHHHHHHHhheec
Confidence 3456666777777777777766553
No 186
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=28.27 E-value=91 Score=24.74 Aligned_cols=7 Identities=0% Similarity=0.221 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 019053 55 LLSYYVF 61 (347)
Q Consensus 55 li~~~~~ 61 (347)
.++.+.+
T Consensus 19 aIvvW~i 25 (81)
T PF00558_consen 19 AIVVWTI 25 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 187
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=28.21 E-value=46 Score=26.94 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=21.0
Q ss_pred cCcccccccccccCCcee-ecCCCCccccHHHHHHH
Q 019053 124 IYGCVVCLNEFQEQDMLR-VLPNCSHAFHLDCIDIW 158 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~-~lp~C~H~FH~~CI~~W 158 (347)
...|.||... .|..+. .-+.|...||..|...+
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 4679999887 222111 11137789999998663
No 188
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=28.00 E-value=12 Score=36.58 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=26.4
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhc
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS 161 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~ 161 (347)
..|.+|+++|..+.....+. |--+||..|+-.|+..
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTT 250 (288)
T ss_pred eecHHHHHHHhcccccchhh-cccccccccccccccc
Confidence 37889988887655555554 6668888888888754
No 189
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=27.71 E-value=20 Score=36.39 Aligned_cols=33 Identities=33% Similarity=0.693 Sum_probs=0.0
Q ss_pred ccCCceeecCCCCccccHHHHHHHHh------cCCCCCcccCC
Q 019053 135 QEQDMLRVLPNCSHAFHLDCIDIWLQ------SNANCPLCRTS 171 (347)
Q Consensus 135 ~~~~~~~~lp~C~H~FH~~CI~~WL~------~~~tCPlCR~~ 171 (347)
.+......|. |||++. .-.|-. ...+||+||..
T Consensus 299 ~~~qP~VYl~-CGHVhG---~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 299 DERQPWVYLN-CGHVHG---YHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------------
T ss_pred cccCceeecc-ccceee---ecccccccccccccccCCCcccc
No 190
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=26.85 E-value=70 Score=35.40 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=18.8
Q ss_pred ccccc-cc-c-chhHHHHHHHHh-hcCC---CCCCcccccccc
Q 019053 286 FSLDS-AA-D-RQLYITVQAIVQ-QNGH---NGEVSTNEECSA 321 (347)
Q Consensus 286 ~s~d~-~~-~-~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~ 321 (347)
+|||- ++ + |+-|+.+|..-. ++.+ ..+|.++|.-++
T Consensus 635 VSLDGr~nA~VRHSyIDLq~~~r~~snDaSLDSGVDmnE~~~~ 677 (807)
T PF10577_consen 635 VSLDGRSNAQVRHSYIDLQRGGRNGSNDASLDSGVDMNEPKSG 677 (807)
T ss_pred EecCCCcchheehhhhhhhhcccCCCccCCCCCCccccccccc
Confidence 47776 22 2 777777766553 2222 224666665443
No 191
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=26.82 E-value=1e+02 Score=23.42 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 019053 43 IAILSIMGTAF 53 (347)
Q Consensus 43 iiil~il~~~~ 53 (347)
+.++|+.++++
T Consensus 7 i~i~Gm~iVF~ 17 (79)
T PF04277_consen 7 IMIIGMGIVFL 17 (79)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 192
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=26.69 E-value=26 Score=38.05 Aligned_cols=52 Identities=23% Similarity=0.484 Sum_probs=33.6
Q ss_pred CcccccccccccCCc----eee--cCCCCccccHHHHHHH--H--------hcCCCCCcccCCCCCCC
Q 019053 125 YGCVVCLNEFQEQDM----LRV--LPNCSHAFHLDCIDIW--L--------QSNANCPLCRTSISGTT 176 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~----~~~--lp~C~H~FH~~CI~~W--L--------~~~~tCPlCR~~i~~~~ 176 (347)
..|-||-|+=.+.+. +.. -..|.-.||..|...- | ..-+.|-.|+..+...+
T Consensus 118 KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlk 185 (900)
T KOG0956|consen 118 KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLK 185 (900)
T ss_pred ceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHhh
Confidence 469999887444331 111 1147788999998764 2 12356999998776654
No 193
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.56 E-value=46 Score=29.59 Aligned_cols=48 Identities=27% Similarity=0.474 Sum_probs=33.6
Q ss_pred cccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCCCC
Q 019053 128 VVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRY 178 (347)
Q Consensus 128 ~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~ 178 (347)
.||+..=...+....-|.=.+-||.+|-.+-+. .||.|.++|.....+
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGDYHV 55 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCceec
Confidence 477776555555544444457799999888663 599999999876543
No 194
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=26.49 E-value=22 Score=36.70 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 37 AFPILAIAILSIMGTAFLLLSYYVFVSK 64 (347)
Q Consensus 37 ~~~ilviiil~il~~~~lli~~~~~~~r 64 (347)
.+.+++++++|+++++++++++++++.+
T Consensus 350 ~~~~~l~vVlgvavlivVv~viv~vc~~ 377 (439)
T PF02480_consen 350 RGAALLGVVLGVAVLIVVVGVIVWVCLR 377 (439)
T ss_dssp ----------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHhheeee
Confidence 3444555555554444444444444333
No 195
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHA02844 putative transmembrane protein; Provisional
Probab=26.33 E-value=1.6e+02 Score=23.00 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=16.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 34 SESAFPILAIAILSIMGTAFLLLSYYVFVSK 64 (347)
Q Consensus 34 s~~~~~ilviiil~il~~~~lli~~~~~~~r 64 (347)
.........+.++.++++ ++++++.+++.|
T Consensus 41 ~~~~~~~~~~~ii~i~~v-~~~~~~~flYLK 70 (75)
T PHA02844 41 NNVCSSSTKIWILTIIFV-VFATFLTFLYLK 70 (75)
T ss_pred cccCChhHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 445567777777664444 444444444444
No 197
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=26.33 E-value=35 Score=32.71 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=30.4
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCC--CCc
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN--CPL 167 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~t--CPl 167 (347)
..|+|-...+.+. .+..+|||+|-.+=|...+....+ ||+
T Consensus 177 ~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 177 NRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred ccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 5688887777763 333469999999999999977544 765
No 198
>PTZ00046 rifin; Provisional
Probab=26.20 E-value=1.3e+02 Score=30.37 Aligned_cols=25 Identities=12% Similarity=0.384 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019053 41 LAIAILSIMGTAFLLLSYYVFVSKCC 66 (347)
Q Consensus 41 lviiil~il~~~~lli~~~~~~~r~c 66 (347)
+++-+++|++.+++++++| +++||.
T Consensus 317 IiaSiiAIvVIVLIMvIIY-LILRYR 341 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIY-LILRYR 341 (358)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhh
Confidence 3334455555555555555 445553
No 199
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=25.87 E-value=38 Score=23.45 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019053 40 ILAIAILSIMGTAFLLLS 57 (347)
Q Consensus 40 ilviiil~il~~~~lli~ 57 (347)
+++++++++.+..++..+
T Consensus 11 IlVF~lVglv~i~iva~~ 28 (43)
T PF08114_consen 11 ILVFCLVGLVGIGIVALF 28 (43)
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 344444444444444333
No 200
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=25.84 E-value=54 Score=31.68 Aligned_cols=49 Identities=27% Similarity=0.467 Sum_probs=29.8
Q ss_pred cCcccccccccccCCceeecCCCCc-cccHHHHHHH-HhcCCCCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSH-AFHLDCIDIW-LQSNANCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H-~FH~~CI~~W-L~~~~tCPlCR~~i~~ 174 (347)
..-|.||++-.-+|-.-.-|..-.- .=|.+|+++| |..+..|| |+.+..
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p--rsk~sk 80 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP--RSKLSK 80 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC--cccccc
Confidence 3568888777655532222221111 3589999999 56688899 555543
No 201
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=25.65 E-value=99 Score=34.57 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=21.1
Q ss_pred ccccccCCCccccccccCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 019053 10 NQGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAF 53 (347)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ilviiil~il~~~~ 53 (347)
..||+.|..-+..++...... ..+....+++++.+++.+++++
T Consensus 520 ~aG~G~~S~~~~fqT~~~~~~-~~~~~~l~~i~g~~~~~v~~ll 562 (996)
T KOG0196|consen 520 AAGYGPYSGKHEFQTLPSESS-SQSGEQLPLIIGSILAGVVFLL 562 (996)
T ss_pred ccCCCCCCCceeeeecCcccc-cccccchhhHHHHHHHHHHHHH
Confidence 468888886544445443222 3333344444444444433333
No 202
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=25.42 E-value=56 Score=30.60 Aligned_cols=16 Identities=13% Similarity=0.486 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 019053 45 ILSIMGTAFLLLSYYV 60 (347)
Q Consensus 45 il~il~~~~lli~~~~ 60 (347)
+|+|+++++++++|.+
T Consensus 19 aI~IV~lLIiiva~~l 34 (217)
T PF07423_consen 19 AIGIVSLLIIIVAYQL 34 (217)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4444444444444443
No 203
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.24 E-value=55 Score=26.77 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=28.2
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHH
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL 159 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL 159 (347)
...|.||-..+.+|+.-...+ .-..|.+|+..=.
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~ 39 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESK 39 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHH
Confidence 357999999999999887775 6678999988743
No 204
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=25.22 E-value=49 Score=24.75 Aligned_cols=14 Identities=36% Similarity=0.940 Sum_probs=10.2
Q ss_pred CCCCCcccCCCCCC
Q 019053 162 NANCPLCRTSISGT 175 (347)
Q Consensus 162 ~~tCPlCR~~i~~~ 175 (347)
+..||+|+..+...
T Consensus 2 k~~CPlCkt~~n~g 15 (61)
T PF05715_consen 2 KSLCPLCKTTLNVG 15 (61)
T ss_pred CccCCcccchhhcC
Confidence 45799998887543
No 205
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=24.95 E-value=58 Score=26.90 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=27.0
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHH
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL 159 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL 159 (347)
.|.||-.++..|+.-..+.+ -..|..|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 69999999999998877763 778999988743
No 206
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=24.94 E-value=1.4e+02 Score=29.98 Aligned_cols=24 Identities=13% Similarity=0.444 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019053 41 LAIAILSIMGTAFLLLSYYVFVSKC 65 (347)
Q Consensus 41 lviiil~il~~~~lli~~~~~~~r~ 65 (347)
+++-+++|++.+++++++| +++||
T Consensus 312 IiaSiIAIvvIVLIMvIIY-LILRY 335 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIY-LILRY 335 (353)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 3344555555555555555 34555
No 207
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.44 E-value=2.1e+02 Score=20.83 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 019053 38 FPILAIAILSIMGTAFL 54 (347)
Q Consensus 38 ~~ilviiil~il~~~~l 54 (347)
+|..+++++++++.+++
T Consensus 18 ~pl~l~il~~f~~G~ll 34 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALL 34 (68)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 44444444444433333
No 208
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=23.97 E-value=80 Score=25.50 Aligned_cols=7 Identities=29% Similarity=0.833 Sum_probs=3.5
Q ss_pred HHHhhcc
Q 019053 62 VSKCCNN 68 (347)
Q Consensus 62 ~~r~c~~ 68 (347)
|..||+.
T Consensus 51 wfvCC~k 57 (94)
T PF05393_consen 51 WFVCCKK 57 (94)
T ss_pred HHHHHHH
Confidence 3446654
No 209
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=23.74 E-value=39 Score=25.20 Aligned_cols=16 Identities=38% Similarity=0.962 Sum_probs=12.1
Q ss_pred CCCCCcccCCCCCCCC
Q 019053 162 NANCPLCRTSISGTTR 177 (347)
Q Consensus 162 ~~tCPlCR~~i~~~~~ 177 (347)
..+||+|..+.....+
T Consensus 39 ~p~CPlC~s~M~~~~r 54 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGTR 54 (59)
T ss_pred CccCCCcCCcccccee
Confidence 4679999998876543
No 210
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=23.41 E-value=35 Score=24.32 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=8.8
Q ss_pred Cccccccccccc
Q 019053 125 YGCVVCLNEFQE 136 (347)
Q Consensus 125 ~~C~ICl~~~~~ 136 (347)
..|+.|-++|..
T Consensus 3 f~CP~C~~~~~~ 14 (54)
T PF05605_consen 3 FTCPYCGKGFSE 14 (54)
T ss_pred cCCCCCCCccCH
Confidence 579999886554
No 211
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=23.15 E-value=1.2e+02 Score=22.22 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 019053 39 PILAIAILSIMGT 51 (347)
Q Consensus 39 ~ilviiil~il~~ 51 (347)
|+++++++|+++.
T Consensus 6 wlIIviVlgvIig 18 (55)
T PF11446_consen 6 WLIIVIVLGVIIG 18 (55)
T ss_pred hHHHHHHHHHHHh
Confidence 3333434444333
No 212
>PHA02975 hypothetical protein; Provisional
Probab=23.05 E-value=2e+02 Score=22.06 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=14.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 34 SESAFPILAIAILSIMGTAFLLLSYYVFVSK 64 (347)
Q Consensus 34 s~~~~~ilviiil~il~~~~lli~~~~~~~r 64 (347)
.........++++.++ .+++++++.+++.|
T Consensus 37 ~~~~~~~~~~~ii~i~-~v~~~~~~~flYLK 66 (69)
T PHA02975 37 PKKKSSLSIILIIFII-FITCIAVFTFLYLK 66 (69)
T ss_pred CCcCCchHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4444555556555544 44444444444443
No 213
>PF14979 TMEM52: Transmembrane 52
Probab=22.84 E-value=1.4e+02 Score=26.41 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=7.7
Q ss_pred HHHHHHHHHHH-hhcc
Q 019053 54 LLLSYYVFVSK-CCNN 68 (347)
Q Consensus 54 lli~~~~~~~r-~c~~ 68 (347)
|+..+...+.| ||++
T Consensus 33 LLCG~ta~C~rfCClr 48 (154)
T PF14979_consen 33 LLCGLTASCVRFCCLR 48 (154)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 33344445555 7765
No 214
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=22.66 E-value=1.6e+02 Score=30.07 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=21.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019053 34 SESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNN 68 (347)
Q Consensus 34 s~~~~~ilviiil~il~~~~lli~~~~~~~r~c~~ 68 (347)
..-.+..-..+.++|-+.+++++++.+.++-||++
T Consensus 289 p~Rdyy~df~~tfaIpl~Valll~~~La~imc~rr 323 (449)
T KOG4482|consen 289 PPRDYYGDFLHTFAIPLGVALLLVLALAYIMCCRR 323 (449)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33455555555666666666666666666677765
No 215
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=22.51 E-value=2.3e+02 Score=23.32 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 37 AFPILAIAILSIMGTAFLLLSYYVFV 62 (347)
Q Consensus 37 ~~~ilviiil~il~~~~lli~~~~~~ 62 (347)
-|-|++|.+.++++++=+++.+++++
T Consensus 17 PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 17 PWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777766666666666555444
No 216
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.25 E-value=44 Score=21.52 Aligned_cols=9 Identities=33% Similarity=0.936 Sum_probs=6.4
Q ss_pred CCCCCcccC
Q 019053 162 NANCPLCRT 170 (347)
Q Consensus 162 ~~tCPlCR~ 170 (347)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 347999955
No 217
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=22.05 E-value=1.5e+02 Score=28.16 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019053 38 FPILAIAILSIMGTAFLLLSYYVFVSKCCN 67 (347)
Q Consensus 38 ~~ilviiil~il~~~~lli~~~~~~~r~c~ 67 (347)
+..+++-++..++++.++++.++-++|.|+
T Consensus 186 ~S~vilpvvIaliVitl~vf~LvgLyr~C~ 215 (259)
T PF07010_consen 186 YSSVILPVVIALIVITLSVFTLVGLYRMCW 215 (259)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333344444444555543
No 218
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=21.89 E-value=74 Score=31.54 Aligned_cols=44 Identities=5% Similarity=-0.180 Sum_probs=31.0
Q ss_pred ccCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSI 172 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i 172 (347)
...+|-.|-+.... ....+ |+|. |+-.|.. +.-..+||.|-...
T Consensus 342 s~~~~~~~~~~~~s---t~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLS---TIWSG-GNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceee---eEeec-CCcccChhhhhh--cccCCccccccccc
Confidence 34678888665544 34555 9996 9999987 55568899996543
No 219
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.41 E-value=20 Score=34.39 Aligned_cols=48 Identities=31% Similarity=0.561 Sum_probs=36.0
Q ss_pred CcccccccccccCC---ceeecCC-------CCccccHHHHHHHHhcC-CCCCcccCCC
Q 019053 125 YGCVVCLNEFQEQD---MLRVLPN-------CSHAFHLDCIDIWLQSN-ANCPLCRTSI 172 (347)
Q Consensus 125 ~~C~ICl~~~~~~~---~~~~lp~-------C~H~FH~~CI~~WL~~~-~tCPlCR~~i 172 (347)
..|.||...|...+ ..+++.. |+|..+..|++.-+... ..||.|+...
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 56999999998432 2333423 99999999999987553 5799998753
No 220
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=21.37 E-value=70 Score=31.66 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=25.8
Q ss_pred CCCCHHHHhcCCceeeeccCCCCccCcccccccc
Q 019053 100 RGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNE 133 (347)
Q Consensus 100 ~gl~~~~i~~lp~~~~~~~~~~~~~~~C~ICl~~ 133 (347)
.|....+.+.+|++-........+..+|+.|-..
T Consensus 284 mGFPs~~~E~~Ps~CaCHs~~~~gGy~CP~Cktk 317 (421)
T COG5151 284 MGFPSPMMEQLPSVCACHSEVKGGGYECPVCKTK 317 (421)
T ss_pred ecCCchhhhcCccceeeeeeeccCceeCCcccce
Confidence 4677788888898877766666667889999554
No 221
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.23 E-value=1.2e+02 Score=24.42 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 019053 46 LSIMGTAFLLLSYYVF 61 (347)
Q Consensus 46 l~il~~~~lli~~~~~ 61 (347)
++.+++++++++.|++
T Consensus 7 v~~~~~v~~~i~~y~~ 22 (87)
T PF10883_consen 7 VGGVGAVVALILAYLW 22 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 222
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=20.97 E-value=1.1e+02 Score=24.26 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 019053 49 MGTAFLLLSYYVFV 62 (347)
Q Consensus 49 l~~~~lli~~~~~~ 62 (347)
.+.+|+++++|+++
T Consensus 76 ~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 76 AFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHHHhh
Confidence 34455555555543
No 223
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.94 E-value=1.1e+02 Score=35.03 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=36.0
Q ss_pred ccCccccccccccc---CCceeecCCCCccccHHHHHHHH-hcCCCCCcccCCCCCCC
Q 019053 123 SIYGCVVCLNEFQE---QDMLRVLPNCSHAFHLDCIDIWL-QSNANCPLCRTSISGTT 176 (347)
Q Consensus 123 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~CI~~WL-~~~~tCPlCR~~i~~~~ 176 (347)
+...|.||-++... |+.-.....|+--.|..|.+-=. ..+++||-|++.-...+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 44679999998753 33222222366669999995422 35678999999877544
No 224
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=20.83 E-value=1.9e+02 Score=30.80 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=43.1
Q ss_pred cccccccccccccccccchhHHHHHHHHhhcCCCCCCcccccccccccccceeccccCCCCc-eeeecccC
Q 019053 277 FSTQPIRRSFSLDSAADRQLYITVQAIVQQNGHNGEVSTNEECSARVCKSFFPFGRVRGSRN-AVLPVEFE 346 (347)
Q Consensus 277 ~~~qp~rrs~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~ 346 (347)
+.+.++++.|+|--+-+-+- -+|-+++.+..+....+.-+-.+++--+|.|+-++++ -++||+-|
T Consensus 513 ~~~h~sq~~~~~kis~~es~-----~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~ 578 (622)
T KOG3751|consen 513 QAIHRSQTWFHGKISRDESQ-----RLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDD 578 (622)
T ss_pred hhhcccccCcccccCchhhh-----hHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCC
Confidence 35789999999877655221 2455666666554443333344556677889999998 78888755
No 225
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=20.83 E-value=1.2e+02 Score=24.82 Aligned_cols=8 Identities=25% Similarity=0.729 Sum_probs=3.2
Q ss_pred HHHhhccc
Q 019053 62 VSKCCNNW 69 (347)
Q Consensus 62 ~~r~c~~~ 69 (347)
++.||+.+
T Consensus 60 Lv~CC~~K 67 (98)
T PF07204_consen 60 LVCCCRAK 67 (98)
T ss_pred HHHHhhhh
Confidence 33344433
No 226
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=20.77 E-value=62 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.725 Sum_probs=12.2
Q ss_pred CCCccccHHHHHHHHhcCCCCCcc
Q 019053 145 NCSHAFHLDCIDIWLQSNANCPLC 168 (347)
Q Consensus 145 ~C~H~FH~~CI~~WL~~~~tCPlC 168 (347)
.|||.|-..= ..-......||.|
T Consensus 33 ~Cgh~w~~~v-~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASV-NDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccH-hhhccCCCCCCCC
Confidence 3666655432 2222445669988
No 227
>PHA02650 hypothetical protein; Provisional
Probab=20.59 E-value=1.9e+02 Score=22.92 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=16.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019053 35 ESAFPILAIAILSIMGTAFLLLSYYVFVSKC 65 (347)
Q Consensus 35 ~~~~~ilviiil~il~~~~lli~~~~~~~r~ 65 (347)
...+....++++.++++++ ++++.+++.|-
T Consensus 43 ~~~~~~~~~~ii~i~~v~i-~~l~~flYLK~ 72 (81)
T PHA02650 43 SVSWFNGQNFIFLIFSLII-VALFSFFVFKG 72 (81)
T ss_pred ccCCchHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3457777777776554444 44444455543
No 228
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=20.57 E-value=81 Score=19.62 Aligned_cols=29 Identities=17% Similarity=0.501 Sum_probs=10.0
Q ss_pred cccccccccccCCceeecCCCCccccHHHH
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCI 155 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI 155 (347)
.|.+|-..... ...-.-+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47788777665 333344458888999885
No 229
>PHA03164 hypothetical protein; Provisional
Probab=20.48 E-value=89 Score=24.58 Aligned_cols=24 Identities=29% Similarity=0.496 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 40 ILAIAILSIMGTAFLLLSYYVFVS 63 (347)
Q Consensus 40 ilviiil~il~~~~lli~~~~~~~ 63 (347)
.+++.-++|...+|+++++|+|-.
T Consensus 60 FlvLtgLaIamILfiifvlyvFnV 83 (88)
T PHA03164 60 FLVLTGLAIAMILFIIFVLYVFNV 83 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHheee
Confidence 456666666667777776666533
No 230
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=20.47 E-value=51 Score=35.13 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=24.0
Q ss_pred CccCccccccccccc-----------CCceeecCCCCccccHHHHHHH
Q 019053 122 MSIYGCVVCLNEFQE-----------QDMLRVLPNCSHAFHLDCIDIW 158 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~CI~~W 158 (347)
.....|+||-|.|+. .+.+.+. =|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 335689999999974 1123221 4789999998774
No 231
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.42 E-value=37 Score=33.35 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=39.5
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
+...|-||..-+.-.... ..|.|.|+..|...|....+.||.|+..+.+.
T Consensus 104 ~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 346788998777654322 25999999999999999999999999877654
Done!