Query 019053
Match_columns 347
No_of_seqs 308 out of 1879
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:10:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3E-17 1E-21 130.3 7.7 78 96-174 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 2.2E-17 7.6E-22 126.0 3.8 70 105-175 4-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 7.2E-15 2.5E-19 105.0 3.9 50 124-173 5-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 2.7E-14 9.2E-19 108.3 5.8 53 123-176 14-66 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 3.7E-14 1.3E-18 106.0 5.5 53 122-175 12-64 (69)
6 2ect_A Ring finger protein 126 99.5 4.5E-14 1.5E-18 108.1 5.4 54 122-176 13-66 (78)
7 2ecl_A Ring-box protein 2; RNF 99.4 3.6E-14 1.2E-18 110.2 4.1 51 124-174 15-76 (81)
8 1v87_A Deltex protein 2; ring- 99.4 2.1E-13 7.2E-18 111.7 6.9 53 124-177 25-97 (114)
9 2ecm_A Ring finger and CHY zin 99.4 1.7E-13 5.7E-18 97.7 4.7 50 123-173 4-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.4 4.1E-13 1.4E-17 100.5 4.5 53 123-176 9-65 (71)
11 2ea6_A Ring finger protein 4; 99.3 6.3E-13 2.2E-17 98.6 4.8 51 122-173 13-67 (69)
12 3dpl_R Ring-box protein 1; ubi 99.3 6.3E-13 2.2E-17 108.8 4.7 50 123-173 36-100 (106)
13 2xeu_A Ring finger protein 4; 99.3 5E-13 1.7E-17 97.7 3.1 52 124-176 3-58 (64)
14 2d8s_A Cellular modulator of i 99.3 1.5E-12 5.2E-17 101.3 4.5 53 123-177 14-73 (80)
15 4a0k_B E3 ubiquitin-protein li 99.3 7E-13 2.4E-17 110.5 0.9 51 123-174 47-112 (117)
16 2ecn_A Ring finger protein 141 99.2 1.7E-12 5.7E-17 97.2 2.5 50 122-176 13-62 (70)
17 1chc_A Equine herpes virus-1 r 99.2 3.7E-12 1.3E-16 94.7 4.1 48 124-174 5-52 (68)
18 2d8t_A Dactylidin, ring finger 99.2 3.5E-12 1.2E-16 96.0 3.6 50 122-175 13-62 (71)
19 2ct2_A Tripartite motif protei 99.2 1.4E-11 4.7E-16 95.7 6.8 53 122-175 13-69 (88)
20 2djb_A Polycomb group ring fin 99.2 1E-11 3.5E-16 93.7 5.6 52 122-176 13-64 (72)
21 2csy_A Zinc finger protein 183 99.2 2.2E-11 7.4E-16 93.8 4.7 47 123-173 14-60 (81)
22 4ayc_A E3 ubiquitin-protein li 99.1 1.4E-11 4.7E-16 104.7 3.6 46 124-173 53-98 (138)
23 2ysl_A Tripartite motif-contai 99.1 2.9E-11 9.9E-16 90.9 5.0 50 122-175 18-70 (73)
24 2yur_A Retinoblastoma-binding 99.1 4.1E-11 1.4E-15 91.0 5.3 51 122-175 13-65 (74)
25 2ecy_A TNF receptor-associated 99.1 3.3E-11 1.1E-15 89.2 4.7 49 123-175 14-63 (66)
26 2ct0_A Non-SMC element 1 homol 99.1 5.8E-11 2E-15 91.1 4.9 49 124-175 15-65 (74)
27 4ap4_A E3 ubiquitin ligase RNF 99.1 4.5E-11 1.5E-15 99.1 3.8 53 123-176 6-62 (133)
28 3lrq_A E3 ubiquitin-protein li 99.1 5.6E-11 1.9E-15 95.5 3.6 48 123-174 21-70 (100)
29 1t1h_A Gspef-atpub14, armadill 99.1 9.4E-11 3.2E-15 89.4 4.5 49 123-175 7-56 (78)
30 2ecw_A Tripartite motif-contai 99.1 1.3E-10 4.4E-15 89.2 5.2 49 123-175 18-72 (85)
31 4ap4_A E3 ubiquitin ligase RNF 99.0 1E-10 3.5E-15 96.9 4.6 53 122-175 70-126 (133)
32 2ecv_A Tripartite motif-contai 99.0 1.3E-10 4.3E-15 89.3 4.8 49 123-175 18-72 (85)
33 2y43_A E3 ubiquitin-protein li 99.0 1E-10 3.5E-15 93.4 3.9 47 124-174 22-69 (99)
34 2ysj_A Tripartite motif-contai 99.0 1.9E-10 6.4E-15 84.3 4.7 43 122-168 18-63 (63)
35 2egp_A Tripartite motif-contai 99.0 5.5E-11 1.9E-15 90.6 1.8 49 123-175 11-66 (79)
36 1g25_A CDK-activating kinase a 99.0 1.9E-10 6.6E-15 84.8 4.5 51 124-175 3-56 (65)
37 2ckl_A Polycomb group ring fin 99.0 1.7E-10 5.9E-15 93.6 4.3 49 123-174 14-62 (108)
38 3fl2_A E3 ubiquitin-protein li 99.0 2.2E-10 7.4E-15 95.3 5.0 47 124-174 52-99 (124)
39 2ckl_B Ubiquitin ligase protei 99.0 2.6E-10 9E-15 99.3 5.3 49 123-174 53-102 (165)
40 2ecj_A Tripartite motif-contai 99.0 2.6E-10 8.8E-15 81.7 3.5 42 123-168 14-58 (58)
41 3ztg_A E3 ubiquitin-protein li 99.0 5.1E-10 1.7E-14 87.9 4.8 49 122-173 11-61 (92)
42 1jm7_A BRCA1, breast cancer ty 98.9 3.9E-10 1.3E-14 91.4 3.7 48 124-175 21-71 (112)
43 1z6u_A NP95-like ring finger p 98.9 8.1E-10 2.8E-14 95.4 4.9 48 124-175 78-126 (150)
44 3hct_A TNF receptor-associated 98.9 8.6E-10 2.9E-14 91.0 4.4 49 122-174 16-65 (118)
45 2vje_A E3 ubiquitin-protein li 98.9 1.3E-09 4.3E-14 80.9 4.0 47 123-173 7-56 (64)
46 1rmd_A RAG1; V(D)J recombinati 98.8 1.2E-09 4.2E-14 89.5 3.7 48 124-175 23-71 (116)
47 3l11_A E3 ubiquitin-protein li 98.8 5.3E-10 1.8E-14 91.6 1.1 48 123-174 14-62 (115)
48 1bor_A Transcription factor PM 98.8 1.1E-09 3.8E-14 78.8 1.4 47 122-175 4-50 (56)
49 2y1n_A E3 ubiquitin-protein li 98.8 3.1E-09 1E-13 104.8 4.5 48 125-176 333-381 (389)
50 2vje_B MDM4 protein; proto-onc 98.8 3.7E-09 1.2E-13 78.1 3.8 49 123-173 6-55 (63)
51 2kr4_A Ubiquitin conjugation f 98.8 4.8E-09 1.6E-13 82.0 4.6 48 123-174 13-60 (85)
52 2kre_A Ubiquitin conjugation f 98.8 4.8E-09 1.7E-13 84.6 4.2 50 122-175 27-76 (100)
53 1wgm_A Ubiquitin conjugation f 98.7 7.6E-09 2.6E-13 83.2 4.5 49 123-175 21-70 (98)
54 3knv_A TNF receptor-associated 98.7 4.1E-09 1.4E-13 90.1 2.2 49 122-174 29-78 (141)
55 1e4u_A Transcriptional repress 98.7 1.2E-08 4.2E-13 78.7 4.5 54 122-176 9-64 (78)
56 4ic3_A E3 ubiquitin-protein li 98.7 5.2E-09 1.8E-13 79.5 2.2 43 124-174 24-67 (74)
57 1jm7_B BARD1, BRCA1-associated 98.7 4.5E-09 1.5E-13 86.5 1.6 44 124-173 22-66 (117)
58 3k1l_B Fancl; UBC, ring, RWD, 98.7 4.1E-09 1.4E-13 101.9 1.2 53 122-174 306-373 (381)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.6 3.3E-08 1.1E-12 72.6 3.8 47 123-173 5-58 (60)
60 3hcs_A TNF receptor-associated 98.6 3.6E-08 1.2E-12 86.0 4.4 50 121-174 15-65 (170)
61 2c2l_A CHIP, carboxy terminus 98.5 5.2E-08 1.8E-12 90.2 4.2 48 123-174 207-255 (281)
62 2yu4_A E3 SUMO-protein ligase 98.5 6.4E-08 2.2E-12 76.8 3.6 48 123-173 6-62 (94)
63 2ecg_A Baculoviral IAP repeat- 98.5 7.1E-08 2.4E-12 73.2 3.4 44 124-175 25-69 (75)
64 1wim_A KIAA0161 protein; ring 98.4 1E-07 3.6E-12 75.3 3.6 47 124-171 5-61 (94)
65 2ea5_A Cell growth regulator w 98.4 1.5E-07 5.2E-12 70.5 4.0 45 123-175 14-59 (68)
66 2yho_A E3 ubiquitin-protein li 98.4 9E-08 3.1E-12 73.8 2.2 44 124-175 18-62 (79)
67 2f42_A STIP1 homology and U-bo 98.3 2.7E-07 9.2E-12 82.0 4.6 49 122-174 104-153 (179)
68 2bay_A PRE-mRNA splicing facto 98.2 6.3E-07 2.1E-11 65.8 2.1 49 125-176 4-52 (61)
69 3t6p_A Baculoviral IAP repeat- 98.1 4.7E-07 1.6E-11 88.1 1.3 44 124-175 295-339 (345)
70 3htk_C E3 SUMO-protein ligase 98.0 2.4E-06 8.1E-11 80.0 2.8 47 124-173 181-231 (267)
71 3vk6_A E3 ubiquitin-protein li 97.8 9.3E-06 3.2E-10 65.2 3.5 47 126-175 3-50 (101)
72 3nw0_A Non-structural maintena 97.8 2.3E-05 8E-10 72.4 5.3 49 124-175 180-230 (238)
73 2ko5_A Ring finger protein Z; 95.9 0.012 4.2E-07 46.5 5.4 55 120-179 24-78 (99)
74 2lri_C Autoimmune regulator; Z 93.2 0.071 2.4E-06 39.3 3.6 45 124-172 12-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 90.6 0.14 4.8E-06 40.0 2.7 33 125-158 4-36 (101)
76 2l5u_A Chromodomain-helicase-D 85.4 0.47 1.6E-05 34.1 2.5 44 123-170 10-57 (61)
77 1we9_A PHD finger family prote 84.1 0.29 9.9E-06 35.3 0.8 49 123-171 5-58 (64)
78 1mm2_A MI2-beta; PHD, zinc fin 84.0 0.28 9.6E-06 35.3 0.7 47 122-172 7-57 (61)
79 1wil_A KIAA1045 protein; ring 83.5 0.97 3.3E-05 35.0 3.6 34 123-158 14-47 (89)
80 3u5n_A E3 ubiquitin-protein li 82.8 0.29 9.8E-06 43.6 0.4 46 123-172 6-55 (207)
81 2k16_A Transcription initiatio 81.8 0.45 1.5E-05 35.4 1.1 53 122-175 16-72 (75)
82 3lqh_A Histone-lysine N-methyl 81.8 0.52 1.8E-05 41.5 1.7 47 125-171 3-63 (183)
83 3o36_A Transcription intermedi 80.3 0.56 1.9E-05 40.8 1.4 46 124-173 4-53 (184)
84 1f62_A Transcription factor WS 78.9 0.93 3.2E-05 31.0 1.9 44 126-170 2-49 (51)
85 2klu_A T-cell surface glycopro 77.3 2.8 9.6E-05 30.9 4.1 29 37-66 6-35 (70)
86 3v43_A Histone acetyltransfera 73.7 0.89 3E-05 36.5 0.7 45 126-170 63-111 (112)
87 2yql_A PHD finger protein 21A; 73.0 0.43 1.5E-05 33.6 -1.2 45 122-170 7-55 (56)
88 2ku3_A Bromodomain-containing 72.3 1.2 4.1E-05 33.1 1.1 48 123-170 15-65 (71)
89 3m62_A Ubiquitin conjugation f 71.7 2.5 8.5E-05 46.0 3.8 50 122-175 889-939 (968)
90 1wep_A PHF8; structural genomi 70.4 3.7 0.00013 30.7 3.5 47 125-172 13-64 (79)
91 1weo_A Cellulose synthase, cat 69.6 9.8 0.00033 29.6 5.7 55 124-178 16-74 (93)
92 2lbm_A Transcriptional regulat 69.3 5 0.00017 33.8 4.4 46 121-170 60-116 (142)
93 2ysm_A Myeloid/lymphoid or mix 68.1 1.5 5.1E-05 34.9 0.9 46 123-169 6-55 (111)
94 2jwa_A Receptor tyrosine-prote 67.7 14 0.00048 24.9 5.5 19 36-54 9-27 (44)
95 2kgg_A Histone demethylase jar 66.6 1.9 6.4E-05 29.8 1.0 44 126-169 4-52 (52)
96 2vpb_A Hpygo1, pygopus homolog 66.1 4.1 0.00014 29.6 2.9 34 124-157 8-42 (65)
97 1xwh_A Autoimmune regulator; P 66.0 0.93 3.2E-05 33.0 -0.7 45 123-171 7-55 (66)
98 2ri7_A Nucleosome-remodeling f 65.7 1.4 4.9E-05 37.7 0.3 47 124-171 8-59 (174)
99 2puy_A PHD finger protein 21A; 65.3 1.2 3.9E-05 31.8 -0.3 45 124-172 5-53 (60)
100 2l43_A N-teminal domain from h 65.1 1.9 6.5E-05 33.3 0.9 50 123-172 24-76 (88)
101 2ro1_A Transcription intermedi 65.1 1.4 4.9E-05 38.6 0.2 43 125-171 3-49 (189)
102 2e6s_A E3 ubiquitin-protein li 63.4 1.1 3.7E-05 33.9 -0.8 44 126-170 28-76 (77)
103 2knc_B Integrin beta-3; transm 63.4 9.1 0.00031 29.0 4.4 6 61-66 30-35 (79)
104 3asl_A E3 ubiquitin-protein li 63.2 1.3 4.5E-05 32.7 -0.3 44 126-170 20-68 (70)
105 1fp0_A KAP-1 corepressor; PHD 62.9 2.4 8.1E-05 33.0 1.1 46 122-171 23-72 (88)
106 3ql9_A Transcriptional regulat 61.9 9 0.00031 31.7 4.5 46 121-170 54-110 (129)
107 2yt5_A Metal-response element- 61.9 3.6 0.00012 29.5 1.8 49 123-171 5-61 (66)
108 2knc_A Integrin alpha-IIB; tra 61.3 11 0.00038 26.5 4.2 21 45-65 16-36 (54)
109 2lv9_A Histone-lysine N-methyl 60.7 2.7 9.3E-05 33.0 1.1 43 125-169 29-74 (98)
110 3v43_A Histone acetyltransfera 59.5 9.8 0.00033 30.3 4.3 33 125-157 6-43 (112)
111 2l8s_A Integrin alpha-1; trans 58.0 11 0.00038 26.6 3.7 12 46-57 14-25 (54)
112 3shb_A E3 ubiquitin-protein li 57.3 1.7 5.8E-05 32.8 -0.7 44 126-170 28-76 (77)
113 1wee_A PHD finger family prote 56.4 1.7 5.8E-05 32.0 -0.8 48 124-172 16-67 (72)
114 1weu_A Inhibitor of growth fam 56.0 6.6 0.00023 30.5 2.6 44 124-172 36-86 (91)
115 1wem_A Death associated transc 55.5 4.5 0.00015 29.9 1.5 46 125-172 17-71 (76)
116 2e6r_A Jumonji/ARID domain-con 54.6 1.3 4.4E-05 34.5 -1.8 47 124-171 16-66 (92)
117 2k1k_A Ephrin type-A receptor 54.6 28 0.00097 22.5 5.1 23 36-58 8-30 (38)
118 2k1a_A Integrin alpha-IIB; sin 54.5 17 0.00059 24.2 4.1 21 45-65 14-34 (42)
119 3ask_A E3 ubiquitin-protein li 51.7 2.5 8.7E-05 38.4 -0.5 44 126-170 176-224 (226)
120 2xb1_A Pygopus homolog 2, B-ce 51.3 6.1 0.00021 31.4 1.7 48 125-172 4-62 (105)
121 1wew_A DNA-binding family prot 50.7 4.8 0.00017 30.0 1.0 48 124-172 16-73 (78)
122 1wev_A Riken cDNA 1110020M19; 49.8 2.1 7.2E-05 33.0 -1.2 50 124-173 16-74 (88)
123 2ks1_B Epidermal growth factor 48.4 26 0.00088 23.6 4.2 10 48-57 21-30 (44)
124 1z60_A TFIIH basal transcripti 46.7 9.3 0.00032 27.4 1.9 42 125-168 16-58 (59)
125 2cu8_A Cysteine-rich protein 2 46.7 11 0.00039 27.1 2.5 40 125-175 10-49 (76)
126 4gne_A Histone-lysine N-methyl 46.3 9.5 0.00033 30.5 2.1 46 122-173 13-64 (107)
127 1wen_A Inhibitor of growth fam 46.2 12 0.00042 27.5 2.6 44 124-172 16-66 (71)
128 2l2t_A Receptor tyrosine-prote 45.9 58 0.002 21.9 5.6 19 37-55 8-27 (44)
129 2kwj_A Zinc finger protein DPF 45.7 11 0.00036 30.2 2.3 34 125-158 2-41 (114)
130 1wyh_A SLIM 2, skeletal muscle 45.7 12 0.00043 26.4 2.5 40 125-174 6-45 (72)
131 1x4k_A Skeletal muscle LIM-pro 44.9 14 0.00047 26.2 2.6 41 125-175 6-46 (72)
132 1iml_A CRIP, cysteine rich int 43.3 11 0.00038 27.2 1.9 38 126-174 2-39 (76)
133 1joc_A EEA1, early endosomal a 43.3 12 0.00042 30.5 2.4 35 123-157 68-102 (125)
134 3t7l_A Zinc finger FYVE domain 43.0 13 0.00045 28.5 2.4 36 124-159 20-55 (90)
135 3o70_A PHD finger protein 13; 42.9 4.3 0.00015 29.7 -0.4 46 123-170 18-66 (68)
136 1y02_A CARP2, FYVE-ring finger 42.0 3.1 0.00011 34.1 -1.4 47 124-170 19-65 (120)
137 2yw8_A RUN and FYVE domain-con 41.2 14 0.00049 27.6 2.3 35 123-157 18-52 (82)
138 1z2q_A LM5-1; membrane protein 41.2 15 0.00051 27.7 2.4 37 122-158 19-55 (84)
139 1x63_A Skeletal muscle LIM-pro 41.1 20 0.0007 26.0 3.2 41 125-175 16-56 (82)
140 2klu_A T-cell surface glycopro 40.7 19 0.00064 26.5 2.7 26 44-69 9-34 (70)
141 2co8_A NEDD9 interacting prote 40.6 20 0.00067 26.4 3.0 41 124-175 15-55 (82)
142 1x61_A Thyroid receptor intera 40.4 23 0.00077 25.0 3.2 39 125-173 6-44 (72)
143 2dj7_A Actin-binding LIM prote 40.2 19 0.00064 26.5 2.8 39 124-173 15-53 (80)
144 1zbd_B Rabphilin-3A; G protein 40.1 12 0.0004 31.1 1.8 34 123-156 54-88 (134)
145 1x4l_A Skeletal muscle LIM-pro 39.9 19 0.00066 25.4 2.8 40 125-174 6-47 (72)
146 1g47_A Pinch protein; LIM doma 39.9 18 0.00063 25.8 2.7 42 124-175 11-52 (77)
147 2knc_B Integrin beta-3; transm 39.6 78 0.0027 23.7 6.2 29 37-65 10-38 (79)
148 2rsd_A E3 SUMO-protein ligase 38.6 2.8 9.6E-05 30.5 -2.0 45 125-170 11-64 (68)
149 1wfk_A Zinc finger, FYVE domai 38.4 18 0.0006 27.7 2.4 50 124-173 9-65 (88)
150 2ysm_A Myeloid/lymphoid or mix 36.1 4.8 0.00016 31.9 -1.2 45 126-171 56-104 (111)
151 1x4u_A Zinc finger, FYVE domai 35.3 19 0.00064 27.1 2.1 34 122-155 12-45 (84)
152 1x68_A FHL5 protein; four-and- 35.3 26 0.00091 25.1 2.9 40 125-174 6-47 (76)
153 2k1a_A Integrin alpha-IIB; sin 34.7 64 0.0022 21.4 4.4 24 36-59 8-32 (42)
154 2knc_A Integrin alpha-IIB; tra 34.7 94 0.0032 21.7 5.5 24 36-59 10-34 (54)
155 1vfy_A Phosphatidylinositol-3- 34.1 22 0.00076 25.9 2.3 33 125-157 12-44 (73)
156 3zyq_A Hepatocyte growth facto 33.3 17 0.00057 32.5 1.8 35 124-158 164-198 (226)
157 2d8y_A Eplin protein; LIM doma 33.1 36 0.0012 25.3 3.5 41 124-175 15-55 (91)
158 3i2d_A E3 SUMO-protein ligase 33.0 31 0.0011 33.4 3.8 47 125-175 250-301 (371)
159 1dvp_A HRS, hepatocyte growth 32.8 16 0.00056 32.3 1.7 35 124-158 161-195 (220)
160 3mpx_A FYVE, rhogef and PH dom 32.8 9.2 0.00031 36.9 0.0 49 124-172 375-430 (434)
161 3f6q_B LIM and senescent cell 32.8 22 0.00077 24.7 2.1 42 124-175 11-52 (72)
162 2l8s_A Integrin alpha-1; trans 32.6 88 0.003 21.9 5.0 23 37-59 8-31 (54)
163 2k9j_B Integrin beta-3; transm 32.6 68 0.0023 21.2 4.3 9 45-53 13-21 (43)
164 3c6w_A P28ING5, inhibitor of g 32.0 9.1 0.00031 27.1 -0.1 41 125-170 10-57 (59)
165 2l3k_A Rhombotin-2, linker, LI 32.0 19 0.00065 28.6 1.8 38 126-173 10-47 (123)
166 1afo_A Glycophorin A; integral 31.8 74 0.0025 20.8 4.2 24 40-63 11-34 (40)
167 1a7i_A QCRP2 (LIM1); LIM domai 31.4 13 0.00045 27.1 0.7 40 125-175 8-47 (81)
168 2cs3_A Protein C14ORF4, MY039 31.3 48 0.0016 25.3 3.7 39 123-161 14-52 (93)
169 4fo9_A E3 SUMO-protein ligase 30.9 36 0.0012 32.9 3.8 48 125-175 216-267 (360)
170 3a1b_A DNA (cytosine-5)-methyl 30.7 38 0.0013 28.9 3.5 37 120-160 75-113 (159)
171 2vnf_A ING 4, P29ING4, inhibit 30.1 9.4 0.00032 27.0 -0.3 41 125-170 11-58 (60)
172 2cor_A Pinch protein; LIM doma 29.7 36 0.0012 24.7 2.9 40 124-175 15-54 (79)
173 1iij_A ERBB-2 receptor protein 29.4 27 0.00091 22.4 1.7 12 38-49 7-18 (35)
174 3kqi_A GRC5, PHD finger protei 29.2 16 0.00056 26.8 0.9 47 126-172 11-62 (75)
175 1nyp_A Pinch protein; LIM doma 28.4 23 0.00079 24.5 1.5 38 125-174 6-43 (66)
176 2o35_A Hypothetical protein DU 27.2 24 0.00083 27.9 1.5 12 149-160 42-53 (105)
177 3fyb_A Protein of unknown func 27.1 25 0.00084 27.9 1.5 12 149-160 41-52 (104)
178 2l4z_A DNA endonuclease RBBP8, 26.7 28 0.00095 27.9 1.9 38 125-173 62-99 (123)
179 2dar_A PDZ and LIM domain prot 26.6 46 0.0016 24.6 3.1 39 124-174 25-63 (90)
180 2kwj_A Zinc finger protein DPF 26.5 6.8 0.00023 31.3 -1.8 45 126-171 60-108 (114)
181 2pv0_B DNA (cytosine-5)-methyl 26.4 43 0.0015 32.6 3.5 47 121-171 90-148 (386)
182 2zet_C Melanophilin; complex, 25.9 40 0.0014 28.5 2.8 33 123-155 67-100 (153)
183 2gmg_A Hypothetical protein PF 25.5 16 0.00056 29.1 0.3 26 145-175 72-97 (105)
184 2ehe_A Four and A half LIM dom 25.3 42 0.0014 24.3 2.5 40 125-174 16-55 (82)
185 2d8x_A Protein pinch; LIM doma 25.0 50 0.0017 23.0 2.8 39 125-175 6-44 (70)
186 1v6g_A Actin binding LIM prote 24.7 43 0.0015 24.1 2.5 39 125-175 16-54 (81)
187 1zfo_A LAsp-1; LIM domain, zin 24.5 20 0.00069 21.8 0.5 28 125-155 4-31 (31)
188 3kv5_D JMJC domain-containing 24.3 16 0.00056 36.6 0.1 46 126-172 39-89 (488)
189 2egq_A FHL1 protein; LIM domai 23.5 43 0.0015 23.8 2.2 40 125-174 16-58 (77)
190 2pk7_A Uncharacterized protein 23.3 21 0.00072 26.2 0.5 19 156-174 2-20 (69)
191 2d8z_A Four and A half LIM dom 23.0 51 0.0017 22.9 2.5 38 125-174 6-43 (70)
192 3mjh_B Early endosome antigen 22.9 12 0.00041 23.8 -0.8 15 124-138 5-19 (34)
193 1x64_A Alpha-actinin-2 associa 22.8 51 0.0017 24.3 2.6 40 124-175 25-64 (89)
194 1x62_A C-terminal LIM domain p 22.8 41 0.0014 24.3 2.0 38 124-173 15-52 (79)
195 1m3v_A FLIN4, fusion of the LI 21.4 66 0.0023 25.3 3.2 48 125-174 33-81 (122)
196 2cup_A Skeletal muscle LIM-pro 20.9 73 0.0025 23.8 3.3 38 125-173 6-44 (101)
197 1wig_A KIAA1808 protein; LIM d 20.7 49 0.0017 23.6 2.1 37 125-173 6-42 (73)
198 2cur_A Skeletal muscle LIM-pro 20.2 59 0.002 22.5 2.4 37 125-173 6-42 (69)
199 2jmo_A Parkin; IBR, E3 ligase, 20.1 13 0.00044 27.8 -1.3 19 145-165 55-73 (80)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=130.33 Aligned_cols=78 Identities=28% Similarity=0.640 Sum_probs=68.6
Q ss_pred cccCCCCCHHHHhcCCceeeeccC-CCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 96 TMWNRGLDDSVIRDIPTFQFKREG-EDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 96 ~~~~~gl~~~~i~~lp~~~~~~~~-~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
.....|++++.|++||.+.+.... .......|+||+++|..++.++.+| |+|.||..||+.|++.+.+||+||..+..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 445689999999999999997763 3344578999999999999999999 99999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-17 Score=126.00 Aligned_cols=70 Identities=36% Similarity=0.940 Sum_probs=62.0
Q ss_pred HHHhcCCceeeeccCCCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 105 SVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 105 ~~i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
+.|+.||.++++......+..+|+||+++|..++.++.+| |+|.||..||..|++.+.+||+||+.+.+.
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3567899999987665566788999999999999999998 999999999999999999999999998754
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.51 E-value=7.2e-15 Score=105.04 Aligned_cols=50 Identities=44% Similarity=1.115 Sum_probs=46.1
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
..+|+||+++|..++.+..++.|+|.||..||..|++.+.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46799999999999988888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=108.25 Aligned_cols=53 Identities=38% Similarity=0.864 Sum_probs=48.2
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 176 (347)
...+|+||+++|..++.+.+++ |+|.||..||..|++.+.+||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 3568999999999999999998 9999999999999999999999999987554
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=3.7e-14 Score=106.02 Aligned_cols=53 Identities=40% Similarity=0.933 Sum_probs=47.9
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
....+|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34578999999999888899998 999999999999999999999999998754
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=4.5e-14 Score=108.09 Aligned_cols=54 Identities=39% Similarity=0.912 Sum_probs=48.8
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 176 (347)
....+|+||++.|..++.+..++ |+|.||..||..|++.+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 34578999999999988888998 9999999999999999999999999998654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.6e-14 Score=110.24 Aligned_cols=51 Identities=29% Similarity=0.805 Sum_probs=42.2
Q ss_pred cCccccccccccc-----------CCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQE-----------QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..+|+||+++|.+ ++.++.++.|+|.||.+||+.||+.+.+||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 4568888888854 45566666799999999999999999999999998764
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.42 E-value=2.1e-13 Score=111.67 Aligned_cols=53 Identities=30% Similarity=0.662 Sum_probs=43.0
Q ss_pred cCcccccccccccCC---------------ceeecCCCCccccHHHHHHHHh-----cCCCCCcccCCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQD---------------MLRVLPNCSHAFHLDCIDIWLQ-----SNANCPLCRTSISGTTR 177 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~WL~-----~~~tCPlCR~~i~~~~~ 177 (347)
..+|+|||++|..+. .++.++ |+|.||..||..||. .+.+||+||+.+.....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 468999999997653 344677 999999999999994 46789999998876543
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=1.7e-13 Score=97.73 Aligned_cols=50 Identities=34% Similarity=0.825 Sum_probs=43.3
Q ss_pred ccCcccccccccccCC-ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 123 SIYGCVVCLNEFQEQD-MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
+..+|+||+++|.+++ .+..++ |+|.||..||..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3568999999996644 567777 9999999999999999999999999875
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.36 E-value=4.1e-13 Score=100.51 Aligned_cols=53 Identities=25% Similarity=0.682 Sum_probs=45.4
Q ss_pred ccCcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 176 (347)
+..+|+||++.|.+. +.+..++ |||.||..||..|++.+.+||+||..+....
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 356899999999763 4557777 9999999999999999999999999987553
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.3e-13 Score=98.64 Aligned_cols=51 Identities=25% Similarity=0.709 Sum_probs=43.8
Q ss_pred CccCcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 122 MSIYGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
.+..+|+||++.|.+. ..+..++ |+|.||..||..|+..+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3457899999999864 3456777 9999999999999999999999999875
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.33 E-value=6.3e-13 Score=108.84 Aligned_cols=50 Identities=30% Similarity=0.701 Sum_probs=42.5
Q ss_pred ccCcccccccccccCC---------------ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 123 SIYGCVVCLNEFQEQD---------------MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
....|+||++.|...- .++.++ |+|.||..||+.||..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3567999999998641 356676 9999999999999999999999999864
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.32 E-value=5e-13 Score=97.75 Aligned_cols=52 Identities=25% Similarity=0.712 Sum_probs=44.6
Q ss_pred cCcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176 (347)
Q Consensus 124 ~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 176 (347)
..+|+||++.+.+. +.+..++ |||.||..||..|++.+.+||+||..+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 46799999999863 4456777 9999999999999999999999999987543
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=101.32 Aligned_cols=53 Identities=30% Similarity=0.683 Sum_probs=44.6
Q ss_pred ccCcccccccccccCCceeecCCCC-----ccccHHHHHHHHhcC--CCCCcccCCCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCS-----HAFHLDCIDIWLQSN--ANCPLCRTSISGTTR 177 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~~--~tCPlCR~~i~~~~~ 177 (347)
+...|.||+++|.+++.+ ++| |+ |.||.+||+.||..+ .+||+||..+.....
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 346899999999887776 688 96 999999999999875 489999999876543
No 15
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.26 E-value=7e-13 Score=110.46 Aligned_cols=51 Identities=29% Similarity=0.692 Sum_probs=0.8
Q ss_pred ccCcccccccccccC-------------C--ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 123 SIYGCVVCLNEFQEQ-------------D--MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~-------------~--~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..+.|+||+++|... + .+..++ |+|.||..||+.||..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 346899999999752 2 223345 99999999999999999999999998653
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=97.23 Aligned_cols=50 Identities=34% Similarity=0.960 Sum_probs=43.5
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 176 (347)
.+...|+||++.+.+ ..++ |+|.||..||..|+..+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 345689999999877 5677 9999999999999999999999999987554
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.24 E-value=3.7e-12 Score=94.65 Aligned_cols=48 Identities=35% Similarity=0.908 Sum_probs=42.1
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..+|+||++.+.+ ....++ |||.||..||..|++.+.+||+||..+..
T Consensus 5 ~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4679999999875 356787 99999999999999999999999998864
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.5e-12 Score=96.01 Aligned_cols=50 Identities=28% Similarity=0.629 Sum_probs=42.9
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
.+..+|+||++.+.+ ...++ |+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 345689999999866 46677 999999999999999999999999998643
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=95.75 Aligned_cols=53 Identities=26% Similarity=0.732 Sum_probs=45.2
Q ss_pred CccCcccccccccccCCc-eeecCCCCccccHHHHHHHHhcC---CCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDM-LRVLPNCSHAFHLDCIDIWLQSN---ANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~WL~~~---~tCPlCR~~i~~~ 175 (347)
.+..+|+||++.|.+.+. ...++ |||.||..||..|+..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345689999999998765 67787 99999999999999876 7899999988654
No 20
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=93.66 Aligned_cols=52 Identities=21% Similarity=0.498 Sum_probs=43.2
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 176 (347)
.+...|+||++.|.+. +.+++ |+|.||..||..|++.+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3457899999999862 33346 9999999999999999999999999987553
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=93.84 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=41.5
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
....|+||++.|.+ ..+++ |+|.||..||..|+....+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 35689999999976 45677 9999999999999999899999999985
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.15 E-value=1.4e-11 Score=104.69 Aligned_cols=46 Identities=35% Similarity=0.925 Sum_probs=41.2
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
...|+||++.|.+ ...+| |||.||..||..|+..+.+||+||.++.
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3579999999976 56788 9999999999999999999999999885
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.9e-11 Score=90.88 Aligned_cols=50 Identities=32% Similarity=0.663 Sum_probs=41.5
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHh---cCCCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ---SNANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~tCPlCR~~i~~~ 175 (347)
.+...|+||++.|.+ ...++ |||.||..||..|++ .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 345689999999885 55677 999999999999997 456899999998654
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=91.02 Aligned_cols=51 Identities=22% Similarity=0.568 Sum_probs=41.7
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--CCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--ANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~tCPlCR~~i~~~ 175 (347)
.+...|+||++.|.+ ...++.|||.||..||..|+..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 345789999999986 34566699999999999999865 6899999976543
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.3e-11 Score=89.23 Aligned_cols=49 Identities=27% Similarity=0.581 Sum_probs=40.8
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~ 175 (347)
+...|+||++.+.+. ..++ |||.||..||..|+. .+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 356899999999764 3466 999999999999994 567899999998754
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=5.8e-11 Score=91.12 Aligned_cols=49 Identities=24% Similarity=0.600 Sum_probs=41.9
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--CCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--ANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~tCPlCR~~i~~~ 175 (347)
..+|+||.+.+..++... .|+|.||.+||..||+++ .+||+||+++...
T Consensus 15 i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 468999999999775443 599999999999999987 7899999988643
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=4.5e-11 Score=99.14 Aligned_cols=53 Identities=25% Similarity=0.682 Sum_probs=45.1
Q ss_pred ccCcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 176 (347)
+..+|+||++.|.+. +.+..++ |||.||..||..|++.+.+||+||..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 356899999999764 4557787 9999999999999999999999999886543
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.07 E-value=5.6e-11 Score=95.54 Aligned_cols=48 Identities=29% Similarity=0.889 Sum_probs=41.1
Q ss_pred ccCcccccccccccCCceee-cCCCCccccHHHHHHHHhcC-CCCCcccCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRV-LPNCSHAFHLDCIDIWLQSN-ANCPLCRTSISG 174 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~-lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i~~ 174 (347)
+...|+||++.|.+ ... ++ |||.||..||..|+... .+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 34679999999976 445 76 99999999999999987 689999999853
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.06 E-value=9.4e-11 Score=89.40 Aligned_cols=49 Identities=14% Similarity=0.512 Sum_probs=41.9
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~ 175 (347)
+...|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus 7 ~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 35689999999976 45677 9999999999999987 77899999988643
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.06 E-value=1.3e-10 Score=89.22 Aligned_cols=49 Identities=31% Similarity=0.687 Sum_probs=41.8
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc------CCCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS------NANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~------~~tCPlCR~~i~~~ 175 (347)
+...|+||++.|.+. ..++ |+|.||..||..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 356899999998763 4677 9999999999999987 67899999998754
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=1e-10 Score=96.91 Aligned_cols=53 Identities=25% Similarity=0.674 Sum_probs=44.5
Q ss_pred CccCcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
.+...|+||++.|.+. .....++ |||.||..||+.|++.+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 3456799999999863 3446676 999999999999999999999999998754
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=89.27 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=41.8
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc------CCCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS------NANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~------~~tCPlCR~~i~~~ 175 (347)
+...|+||++.|.+ ...++ |+|.||..||..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 35689999999976 34567 9999999999999987 77899999998754
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.04 E-value=1e-10 Score=93.42 Aligned_cols=47 Identities=26% Similarity=0.732 Sum_probs=40.7
Q ss_pred cCcccccccccccCCceeec-CCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVL-PNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
...|+||++.|.+ ...+ + |||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4679999999986 3444 6 99999999999999988999999998863
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=84.27 Aligned_cols=43 Identities=33% Similarity=0.695 Sum_probs=36.2
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHh---cCCCCCcc
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ---SNANCPLC 168 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~tCPlC 168 (347)
.+...|+||++.|.+ ..+++ |||.||..||..|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345789999999986 45677 999999999999998 45689998
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.02 E-value=5.5e-11 Score=90.58 Aligned_cols=49 Identities=29% Similarity=0.601 Sum_probs=41.3
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-------CCCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-------NANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-------~~tCPlCR~~i~~~ 175 (347)
+...|+||++.|.+ ...++ |||.||..||..|+.. ...||+||..+...
T Consensus 11 ~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 45789999999976 34577 9999999999999986 56799999998753
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1.9e-10 Score=84.79 Aligned_cols=51 Identities=25% Similarity=0.658 Sum_probs=40.9
Q ss_pred cCccccccc-ccccCCce-eecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053 124 IYGCVVCLN-EFQEQDML-RVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~ 175 (347)
...|+||++ .|.+.... ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 467999999 77776543 3466 9999999999999765 46799999998754
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=1.7e-10 Score=93.58 Aligned_cols=49 Identities=27% Similarity=0.701 Sum_probs=41.4
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
+...|+||++.|.+ .+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 35679999999976 233347 99999999999999999999999998864
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.01 E-value=2.2e-10 Score=95.25 Aligned_cols=47 Identities=23% Similarity=0.635 Sum_probs=40.6
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC-CCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-tCPlCR~~i~~ 174 (347)
...|+||++.|.+ ...++ |||.||..||..|+..+. +||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4679999999986 45677 999999999999998654 89999999875
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.00 E-value=2.6e-10 Score=99.27 Aligned_cols=49 Identities=35% Similarity=0.736 Sum_probs=40.9
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISG 174 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~ 174 (347)
+...|+||++.|.+ .+..++ |||.||..||..|+.. +.+||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34689999999986 244446 9999999999999987 7789999999853
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2.6e-10 Score=81.73 Aligned_cols=42 Identities=33% Similarity=0.895 Sum_probs=35.2
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHH---hcCCCCCcc
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL---QSNANCPLC 168 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL---~~~~tCPlC 168 (347)
+...|+||++.+.+. ..++ |+|.||..||..|+ ..+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456899999999874 4577 99999999999995 456789998
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.95 E-value=5.1e-10 Score=87.95 Aligned_cols=49 Identities=22% Similarity=0.588 Sum_probs=40.3
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--CCCCcccCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--ANCPLCRTSIS 173 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~tCPlCR~~i~ 173 (347)
.+...|+||++.|.+ ...++.|||.||..||..|+..+ .+||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345789999999986 45665599999999999999754 58999999874
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=3.9e-10 Score=91.44 Aligned_cols=48 Identities=31% Similarity=0.713 Sum_probs=40.0
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC---CCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA---NCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~---tCPlCR~~i~~~ 175 (347)
...|+||++.|.+. ..++ |||.||..||..|+..+. +||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 45799999999763 4567 999999999999998654 899999988643
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.91 E-value=8.1e-10 Score=95.42 Aligned_cols=48 Identities=23% Similarity=0.593 Sum_probs=41.3
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC-CCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-tCPlCR~~i~~~ 175 (347)
...|+||++.|.+ ...++ |||.||..||..|+.... +||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4679999999976 45577 999999999999998764 799999998754
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.89 E-value=8.6e-10 Score=91.00 Aligned_cols=49 Identities=29% Similarity=0.603 Sum_probs=41.5
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC-CCCcccCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISG 174 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-tCPlCR~~i~~ 174 (347)
.+...|+||++.+.+ ...++ |||.||..||..|+.... +||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345789999999976 35677 999999999999998765 89999998864
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.87 E-value=1.3e-09 Score=80.88 Aligned_cols=47 Identities=26% Similarity=0.573 Sum_probs=39.9
Q ss_pred ccCcccccccccccCCceeec--CCCCcc-ccHHHHHHHHhcCCCCCcccCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVL--PNCSHA-FHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
+..+|.||++.+.+ ..++ | |||. |+..|+..|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34679999998765 3444 8 9999 899999999998899999999885
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.85 E-value=1.2e-09 Score=89.50 Aligned_cols=48 Identities=27% Similarity=0.508 Sum_probs=41.1
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~ 175 (347)
...|+||++.+.+ ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4679999999976 45577 9999999999999987 67899999988643
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.84 E-value=5.3e-10 Score=91.61 Aligned_cols=48 Identities=29% Similarity=0.711 Sum_probs=40.7
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISG 174 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~ 174 (347)
+...|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34679999999976 45677 9999999999999976 5679999998863
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.1e-09 Score=78.84 Aligned_cols=47 Identities=23% Similarity=0.642 Sum_probs=39.1
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
.+...|+||++.|.+ .+.++ |||.||..||..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 345679999999987 46788 9999999999885 56899999988643
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.77 E-value=3.1e-09 Score=104.82 Aligned_cols=48 Identities=29% Similarity=0.867 Sum_probs=41.9
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGTT 176 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~~ 176 (347)
.+|+||++.+.+ ...+| |||.||..||..|+. .+.+||+||..+....
T Consensus 333 ~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 333 QLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 689999999865 67788 999999999999998 6788999999987543
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.77 E-value=3.7e-09 Score=78.10 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=39.5
Q ss_pred ccCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
....|.||++...+.. +..+| |||. |+..|+..|.+.+..||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3468999999865521 22348 9998 999999999988889999999985
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.77 E-value=4.8e-09 Score=82.02 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=42.7
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
+...|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45789999999988 56788 99999999999999988999999988753
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.75 E-value=4.8e-09 Score=84.64 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=43.7
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
.+...|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||.++...
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 345789999999988 56788 999999999999999889999999988643
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.72 E-value=7.6e-09 Score=83.18 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=43.0
Q ss_pred ccCcccccccccccCCceeecCCCC-ccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCS-HAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
+...|+||++.|.+ ..+++ || |.|+..||..|+..+.+||+||.++...
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 45789999999988 56777 99 9999999999999888999999988643
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.69 E-value=4.1e-09 Score=90.07 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=41.1
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC-CCCcccCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISG 174 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-tCPlCR~~i~~ 174 (347)
.+...|+||++.|.+. ..++ |||.||..||..|+.... +||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 3457899999999874 5577 999999999999998664 89999998753
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.68 E-value=1.2e-08 Score=78.66 Aligned_cols=54 Identities=19% Similarity=0.381 Sum_probs=41.1
Q ss_pred CccCcccccccccccCCce-eecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDML-RVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGTT 176 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~~ 176 (347)
.+..+|+||++.+...+.. .-++ |||.||..||..|+.. +..||+||..+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3456899999998654432 2244 9999999999998743 567999999987553
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.68 E-value=5.2e-09 Score=79.51 Aligned_cols=43 Identities=26% Similarity=0.634 Sum_probs=37.6
Q ss_pred cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
...|.||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4679999998776 66788 9999 999999999 789999998864
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=4.5e-09 Score=86.54 Aligned_cols=44 Identities=30% Similarity=0.697 Sum_probs=38.1
Q ss_pred cCcccccccccccCCceeec-CCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVL-PNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
...|+||++.|.+ ...+ + |||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4679999999976 4555 6 999999999999997 78999999874
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.66 E-value=4.1e-09 Score=101.92 Aligned_cols=53 Identities=19% Similarity=0.553 Sum_probs=40.7
Q ss_pred CccCcccccccccccCCce----eecCCCCccccHHHHHHHHhcC-----------CCCCcccCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDML----RVLPNCSHAFHLDCIDIWLQSN-----------ANCPLCRTSISG 174 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~----~~lp~C~H~FH~~CI~~WL~~~-----------~tCPlCR~~i~~ 174 (347)
....+|+||++.+.++..+ ...++|+|.||..||.+||++. .+||+||++|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3457899999999873322 2233599999999999999753 359999998863
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.57 E-value=3.3e-08 Score=72.56 Aligned_cols=47 Identities=23% Similarity=0.656 Sum_probs=36.5
Q ss_pred ccCcccccccccccCCceeecCCCC--c---cccHHHHHHHHhc--CCCCCcccCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCS--H---AFHLDCIDIWLQS--NANCPLCRTSIS 173 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~--H---~FH~~CI~~WL~~--~~tCPlCR~~i~ 173 (347)
+...|.||+++. ++.+ ++| |. | .||..||+.|+.. +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456899999983 3334 577 65 4 8999999999974 577999998764
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.56 E-value=3.6e-08 Score=85.96 Aligned_cols=50 Identities=28% Similarity=0.563 Sum_probs=41.6
Q ss_pred CCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC-CCCCcccCCCCC
Q 019053 121 DMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN-ANCPLCRTSISG 174 (347)
Q Consensus 121 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i~~ 174 (347)
..+...|+||++.|.+. ..++ |||.||..||..|+... .+||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34457899999999873 5577 99999999999999764 489999998864
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=5.2e-08 Score=90.18 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=41.3
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISG 174 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~ 174 (347)
+...|+||++.|.+ ..++| |||.||..||..|+.. +.+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45789999999988 56788 9999999999999986 4459999998853
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=6.4e-08 Score=76.85 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=38.9
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC------CCCCc--ccCC-CC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN------ANCPL--CRTS-IS 173 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~------~tCPl--CR~~-i~ 173 (347)
....|+||++.|.+ ..+++.|||.|+..||..|+..+ .+||+ |+.. +.
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 34679999999987 45564599999999999999764 48999 9866 43
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=7.1e-08 Score=73.22 Aligned_cols=44 Identities=25% Similarity=0.621 Sum_probs=36.6
Q ss_pred cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|.||++.+.+ ...+| |||. ||..|+..+ ..||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhCC----CCCccCCceecCc
Confidence 4579999999766 56788 9999 999999653 7899999998754
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=1e-07 Score=75.25 Aligned_cols=47 Identities=26% Similarity=0.697 Sum_probs=39.4
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc--------CCCCCc--ccCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--------NANCPL--CRTS 171 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--------~~tCPl--CR~~ 171 (347)
..+|+||++++...+.+.+.+ |+|.||.+|+..|+.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467999999998877776667 9999999999999863 136999 9887
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.5e-07 Score=70.49 Aligned_cols=45 Identities=31% Similarity=0.755 Sum_probs=37.8
Q ss_pred ccCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
+...|.||++...+ +..+| |+|. |+..|+.. ...||+||..|...
T Consensus 14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 34679999998765 77888 9999 99999984 47899999998754
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.39 E-value=9e-08 Score=73.79 Aligned_cols=44 Identities=27% Similarity=0.663 Sum_probs=37.8
Q ss_pred cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|.||++.+.+ +..+| |||. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4579999998766 67888 9999 999999988 4899999998754
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.35 E-value=2.7e-07 Score=82.01 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=41.7
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC-CCCCcccCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN-ANCPLCRTSISG 174 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i~~ 174 (347)
.+...|+||++.|.+ ..++| |||.|+..||..|+..+ .+||+|+.++..
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 456789999999987 56777 99999999999999864 579999988754
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.16 E-value=6.3e-07 Score=65.84 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=41.5
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 176 (347)
..|+||++.+.+ ..+++.|||+|...||.+||..+.+||+++.++....
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 569999999986 4556239999999999999998889999999887544
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.13 E-value=4.7e-07 Score=88.14 Aligned_cols=44 Identities=32% Similarity=0.781 Sum_probs=38.1
Q ss_pred cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|+||++.+.+ +..+| |||. ||..|+..| ..||+||..+...
T Consensus 295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 4679999999876 67788 9999 999999998 7899999998643
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.4e-06 Score=80.02 Aligned_cols=47 Identities=28% Similarity=0.601 Sum_probs=38.5
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--CCCCc--ccCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--ANCPL--CRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~tCPl--CR~~i~ 173 (347)
...|+||++.|.+. ++.+. |||.|+..||..|+..+ .+||+ |+..+.
T Consensus 181 el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 181 ELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 46899999999773 44445 99999999999999764 46999 998775
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.83 E-value=9.3e-06 Score=65.16 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=37.9
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGT 175 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~ 175 (347)
-|.+|--.+.. ..|++| |+|+|+.+|+..|.+ ..++||.|+.+|...
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 47788666554 478888 999999999999985 467899999988643
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.75 E-value=2.3e-05 Score=72.42 Aligned_cols=49 Identities=27% Similarity=0.608 Sum_probs=40.6
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC--CCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA--NCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~--tCPlCR~~i~~~ 175 (347)
..+|+||.+....+..+ ++|+|.||..|+..|++.+. .||.|+..+...
T Consensus 180 i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 57899999999876433 45999999999999998754 799999987654
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.86 E-value=0.012 Score=46.48 Aligned_cols=55 Identities=22% Similarity=0.480 Sum_probs=42.0
Q ss_pred CCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCCCCC
Q 019053 120 EDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYP 179 (347)
Q Consensus 120 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~ 179 (347)
...+...|-.|+-+.+. ++. ...|.+|..|+...|.....||+|+.+|...-..+
T Consensus 24 s~~G~~nCKsCWf~~k~---LV~--C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG---LVE--CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCSCCCCCCSSCSCCSS---EEE--CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred cccCcccChhhccccCC---eee--ecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 34455789999987654 332 14599999999999999999999999997654443
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.19 E-value=0.071 Score=39.34 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=32.8
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcccCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlCR~~i 172 (347)
...|.||.+. + .+..-..|...||..|++..|..- -.||.|....
T Consensus 12 ~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3569999743 3 344555699999999999888653 2599997643
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.58 E-value=0.14 Score=39.96 Aligned_cols=33 Identities=12% Similarity=0.393 Sum_probs=24.6
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHH
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW 158 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 158 (347)
..|.||++++.......-+. |+|.|+..|+..|
T Consensus 4 ~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 56999998754433333365 9999999999983
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.36 E-value=0.47 Score=34.11 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=30.8
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRT 170 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~ 170 (347)
....|.||... + .+..-..|...||..|+..=+.. .-.||.|+.
T Consensus 10 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34679999863 3 34445568889999999985533 234999964
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.07 E-value=0.29 Score=35.29 Aligned_cols=49 Identities=22% Similarity=0.484 Sum_probs=33.9
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHh-----cCCCCCcccCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-----SNANCPLCRTS 171 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----~~~tCPlCR~~ 171 (347)
+...|+||...+.++...+.--.|..-||..|+..-.. ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 34679999998865544444445888899999875432 24569999653
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=83.97 E-value=0.28 Score=35.32 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=31.3
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRTSI 172 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~~i 172 (347)
.....|.||.+. + .+..-..|...||..|+..-|.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345679999752 3 34444458889999999865433 22499997654
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.53 E-value=0.97 Score=34.98 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=22.4
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHH
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW 158 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 158 (347)
.+..|.||- .+..++.. ---.|+-+||..|+..-
T Consensus 14 ~D~~C~VC~-~~t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-ccccccee-ccccccccccHhhcccc
Confidence 456799994 33333321 11138999999999996
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=82.79 E-value=0.29 Score=43.61 Aligned_cols=46 Identities=33% Similarity=0.468 Sum_probs=32.7
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcccCCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLCRTSI 172 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlCR~~i 172 (347)
....|.+|... + .+.....|...||..|+.+.|... -.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34679999743 3 355555688999999998876542 3599997644
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.82 E-value=0.45 Score=35.40 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=36.0
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~~i~~~ 175 (347)
.+...|.||..... ++....--.|.-.||..|+..-+.. .-.||.|+..+...
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 33456999987753 4434444468889999999865532 34599998766543
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=81.77 E-value=0.52 Score=41.53 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=33.9
Q ss_pred CcccccccccccCCc---eeecCCCCccccHHHHHHH------Hh-----cCCCCCcccCC
Q 019053 125 YGCVVCLNEFQEQDM---LRVLPNCSHAFHLDCIDIW------LQ-----SNANCPLCRTS 171 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~CI~~W------L~-----~~~tCPlCR~~ 171 (347)
..|+||...|.+++. .+....|..-||..|+..= +. ..-.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 459999999988763 4444568999999997431 11 15679999654
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=80.31 E-value=0.56 Score=40.83 Aligned_cols=46 Identities=30% Similarity=0.526 Sum_probs=32.5
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlCR~~i~ 173 (347)
...|.||... |+ +.....|.-.||..|+.+-|... -.||.|+..-.
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 4569999744 44 44555688999999998776542 34999976543
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.88 E-value=0.93 Score=31.01 Aligned_cols=44 Identities=32% Similarity=0.693 Sum_probs=28.9
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRT 170 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~ 170 (347)
.|.||...-..+ .+..-..|...||..|+++=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764333 34444468899999999754432 124999864
No 85
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=77.28 E-value=2.8 Score=30.86 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Q 019053 37 AFPILAIAILSIMGTAFLLLSYYVF-VSKCC 66 (347)
Q Consensus 37 ~~~ilviiil~il~~~~lli~~~~~-~~r~c 66 (347)
.++.++ ++||-++.+++++.+.+| ..||.
T Consensus 6 ~~p~~L-ivlGg~~~lll~~glcI~ccvkcr 35 (70)
T 2klu_A 6 RGSMAL-IVLGGVAGLLLFIGLGIFFSVRSR 35 (70)
T ss_dssp CCSSHH-HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHH-HHHhHHHHHHHHHHHHHHHhhHHH
Confidence 355554 456666565555555544 45543
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=73.66 E-value=0.89 Score=36.54 Aligned_cols=45 Identities=27% Similarity=0.631 Sum_probs=30.7
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcccC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLCRT 170 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlCR~ 170 (347)
.|.||...-.+++.+..-..|...||..|+++-|..- -.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5889986533334455555699999999998655432 25999974
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.04 E-value=0.43 Score=33.63 Aligned_cols=45 Identities=33% Similarity=0.628 Sum_probs=29.7
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcccC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLCRT 170 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlCR~ 170 (347)
.....|.||... ++ +..-..|...||..|+.+=|... -.||.|..
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345679999864 33 44444688999999998654332 23888753
No 88
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=72.33 E-value=1.2 Score=33.08 Aligned_cols=48 Identities=19% Similarity=0.417 Sum_probs=32.0
Q ss_pred ccCccccccccc-ccCCceeecCCCCccccHHHHHHHHh--cCCCCCcccC
Q 019053 123 SIYGCVVCLNEF-QEQDMLRVLPNCSHAFHLDCIDIWLQ--SNANCPLCRT 170 (347)
Q Consensus 123 ~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~CI~~WL~--~~~tCPlCR~ 170 (347)
+...|.||...- .+++.+..-..|.-.||..|+..-.. ..-.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 346799998764 34445556667899999999975321 1224888854
No 89
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=71.70 E-value=2.5 Score=45.97 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=42.4
Q ss_pred CccCcccccccccccCCceeecCCCC-ccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCS-HAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
.+...|+|-++-+.+ ..++| .| +.|-..+|..||..+.+||.=|.++...
T Consensus 889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 445789999999988 67788 76 5899999999999999999998888643
No 90
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.38 E-value=3.7 Score=30.70 Aligned_cols=47 Identities=21% Similarity=0.511 Sum_probs=31.2
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHh-----cCCCCCcccCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-----SNANCPLCRTSI 172 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----~~~tCPlCR~~i 172 (347)
..| ||...+..+...+.-..|..-||..|+..-.. ....||.|+..-
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 446 99888764443334445888899999864321 235699997654
No 91
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=69.62 E-value=9.8 Score=29.64 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=37.8
Q ss_pred cCcccccccccccC---CceeecCCCCccccHHHHHHHH-hcCCCCCcccCCCCCCCCC
Q 019053 124 IYGCVVCLNEFQEQ---DMLRVLPNCSHAFHLDCIDIWL-QSNANCPLCRTSISGTTRY 178 (347)
Q Consensus 124 ~~~C~ICl~~~~~~---~~~~~lp~C~H~FH~~CI~~WL-~~~~tCPlCR~~i~~~~~~ 178 (347)
...|.||-+++-.. +.-...-.|+--.|..|.+-=. ..++.||-|++.....+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCC
Confidence 46799999986433 2222222366678999998754 4578899999988766543
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=69.30 E-value=5 Score=33.82 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=31.6
Q ss_pred CCccCcccccccccccCCceeecCCCCccccHHHHHHHHh-----------cCCCCCcccC
Q 019053 121 DMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-----------SNANCPLCRT 170 (347)
Q Consensus 121 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----------~~~tCPlCR~ 170 (347)
+..+..|.||-+. |+ +..-..|...||..||+.=|. ..-.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3445789999753 33 444446889999999997652 1235999963
No 93
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.07 E-value=1.5 Score=34.92 Aligned_cols=46 Identities=28% Similarity=0.543 Sum_probs=29.9
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCccc
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCR 169 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR 169 (347)
++..|.||.+.-+..+ +..-..|...||..|++.++.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~-ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLD-QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTT-SEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcC-CeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567999987633222 2333469999999999987642 22366654
No 94
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=67.73 E-value=14 Score=24.92 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=11.1
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 019053 36 SAFPILAIAILSIMGTAFL 54 (347)
Q Consensus 36 ~~~~ilviiil~il~~~~l 54 (347)
...+.++.+++|+++++++
T Consensus 9 ~~~~~Ia~~vVGvll~vi~ 27 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVL 27 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHH
Confidence 3466677777785533333
No 95
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=66.55 E-value=1.9 Score=29.78 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=29.8
Q ss_pred cccccccccccCCceeecC-CCCccccHHHHHHHH----hcCCCCCccc
Q 019053 126 GCVVCLNEFQEQDMLRVLP-NCSHAFHLDCIDIWL----QSNANCPLCR 169 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~WL----~~~~tCPlCR 169 (347)
.|.||...+.+++..+.-- .|.--||..|+..-. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4789988886555444444 488889999976432 2456699885
No 96
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=66.14 E-value=4.1 Score=29.57 Aligned_cols=34 Identities=26% Similarity=0.655 Sum_probs=26.3
Q ss_pred cCcccccccccccCCceeecC-CCCccccHHHHHH
Q 019053 124 IYGCVVCLNEFQEQDMLRVLP-NCSHAFHLDCIDI 157 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~ 157 (347)
...|.+|...+..++..+.-. .|.--||..|+..
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 467999999988776665555 6888899999754
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=65.98 E-value=0.93 Score=32.97 Aligned_cols=45 Identities=29% Similarity=0.620 Sum_probs=30.5
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccCC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRTS 171 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~~ 171 (347)
....|.||.+. ++ +..-..|.-.||..|+.+=|.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 34679999863 33 4444468889999999865433 2249999643
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=65.69 E-value=1.4 Score=37.70 Aligned_cols=47 Identities=21% Similarity=0.540 Sum_probs=31.6
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHh-----cCCCCCcccCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-----SNANCPLCRTS 171 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----~~~tCPlCR~~ 171 (347)
...| ||...+..+.....-..|.-.||..|+..-.. ..-.||.|+..
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 3568 99887754444444446888999999964221 24569999753
No 99
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=65.28 E-value=1.2 Score=31.75 Aligned_cols=45 Identities=33% Similarity=0.675 Sum_probs=30.5
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcccCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlCR~~i 172 (347)
...|.||... ++ +..-..|.-.||..|+.+=|... -.||.|....
T Consensus 5 ~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4579999864 33 44444689999999998654332 2499886543
No 100
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=65.14 E-value=1.9 Score=33.28 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=33.0
Q ss_pred ccCccccccccc-ccCCceeecCCCCccccHHHHHHHHhc--CCCCCcccCCC
Q 019053 123 SIYGCVVCLNEF-QEQDMLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSI 172 (347)
Q Consensus 123 ~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i 172 (347)
+...|.||...- .+.+.+..-..|.-.||..|+..-+.. .-.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 346799998753 233355555568889999999854321 23499996543
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=65.06 E-value=1.4 Score=38.61 Aligned_cols=43 Identities=37% Similarity=0.671 Sum_probs=29.2
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRTS 171 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~~ 171 (347)
..|.+|... ++ +.....|...||..|+.+=+.. .-.||.|+..
T Consensus 3 ~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 569999754 43 3334458889999999764432 2249999765
No 102
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.45 E-value=1.1 Score=33.88 Aligned_cols=44 Identities=30% Similarity=0.695 Sum_probs=28.9
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhc-----CCCCCcccC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-----NANCPLCRT 170 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~tCPlCR~ 170 (347)
.|.||...-. +..+..-..|...||..|+++=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6889976432 3344455568999999999854332 124888864
No 103
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.41 E-value=9.1 Score=28.96 Aligned_cols=6 Identities=17% Similarity=0.113 Sum_probs=2.2
Q ss_pred HHHHhh
Q 019053 61 FVSKCC 66 (347)
Q Consensus 61 ~~~r~c 66 (347)
++.|++
T Consensus 30 liwk~~ 35 (79)
T 2knc_B 30 LIWKLL 35 (79)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 104
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=63.23 E-value=1.3 Score=32.70 Aligned_cols=44 Identities=34% Similarity=0.685 Sum_probs=27.7
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhc-----CCCCCcccC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-----NANCPLCRT 170 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~tCPlCR~ 170 (347)
.|.||...-. +..+..-..|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4677765422 2334455568899999999854432 224888864
No 105
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=62.86 E-value=2.4 Score=32.98 Aligned_cols=46 Identities=37% Similarity=0.593 Sum_probs=31.4
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcccCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLCRTS 171 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlCR~~ 171 (347)
.+...|.||... ++ +..-..|.-.||..|+++=|..- -.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 334679999864 33 44444688899999997755432 249999653
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=61.88 E-value=9 Score=31.74 Aligned_cols=46 Identities=26% Similarity=0.361 Sum_probs=30.7
Q ss_pred CCccCcccccccccccCCceeecCCCCccccHHHHHHHH------hc-----CCCCCcccC
Q 019053 121 DMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL------QS-----NANCPLCRT 170 (347)
Q Consensus 121 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL------~~-----~~tCPlCR~ 170 (347)
+..+..|.||-+. -.+..-..|-..||.+||..-+ +. .=.|++|+.
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3445679999754 3344444688999999999742 21 235999954
No 107
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=61.88 E-value=3.6 Score=29.48 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=33.2
Q ss_pred ccCccccccccccc-CCceeecCCCCccccHHHHHHHHh-------cCCCCCcccCC
Q 019053 123 SIYGCVVCLNEFQE-QDMLRVLPNCSHAFHLDCIDIWLQ-------SNANCPLCRTS 171 (347)
Q Consensus 123 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~CI~~WL~-------~~~tCPlCR~~ 171 (347)
+...|.||...... +..+..-..|.-.||..|+..=|. ..-.||.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 34679999986532 344555567899999999886432 12359988654
No 108
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=61.26 E-value=11 Score=26.53 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019053 45 ILSIMGTAFLLLSYYVFVSKC 65 (347)
Q Consensus 45 il~il~~~~lli~~~~~~~r~ 65 (347)
++++++.++++.++.+++.||
T Consensus 16 i~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444333333343
No 109
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=60.74 E-value=2.7 Score=32.96 Aligned_cols=43 Identities=28% Similarity=0.546 Sum_probs=29.1
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhc---CCCCCccc
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS---NANCPLCR 169 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~---~~tCPlCR 169 (347)
..| ||-.....+..+ .-..|.-.||..|+..=+.. .-.||.|+
T Consensus 29 vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred EEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 557 898776655544 44458899999998753221 23599995
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=59.53 E-value=9.8 Score=30.25 Aligned_cols=33 Identities=21% Similarity=0.501 Sum_probs=23.2
Q ss_pred Ccccccccccc-----cCCceeecCCCCccccHHHHHH
Q 019053 125 YGCVVCLNEFQ-----EQDMLRVLPNCSHAFHLDCIDI 157 (347)
Q Consensus 125 ~~C~ICl~~~~-----~~~~~~~lp~C~H~FH~~CI~~ 157 (347)
..|.+|+..-. .++++..-..|+..||..|+..
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 56999987632 2234555556999999999963
No 111
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=57.99 E-value=11 Score=26.57 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 019053 46 LSIMGTAFLLLS 57 (347)
Q Consensus 46 l~il~~~~lli~ 57 (347)
+++++.++++.+
T Consensus 14 ~svl~GLLLL~L 25 (54)
T 2l8s_A 14 LSAFAGLLLLML 25 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 112
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=57.29 E-value=1.7 Score=32.85 Aligned_cols=44 Identities=34% Similarity=0.693 Sum_probs=28.1
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhc----C-CCCCcccC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----N-ANCPLCRT 170 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~-~tCPlCR~ 170 (347)
.|.||...-.. +.+..--.|...||..|+++-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 47777655333 334444468899999999965543 1 25998875
No 113
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.36 E-value=1.7 Score=32.02 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=31.8
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHH----hcCCCCCcccCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL----QSNANCPLCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL----~~~~tCPlCR~~i 172 (347)
...| ||...+..++..+.--.|..-||..|+..-- .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 4568 7988776665344444588889999986532 2234599996543
No 114
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.97 E-value=6.6 Score=30.54 Aligned_cols=44 Identities=30% Similarity=0.621 Sum_probs=27.3
Q ss_pred cCcccccccccccCCceeecCC--CC-ccccHHHHHHHHhc----CCCCCcccCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPN--CS-HAFHLDCIDIWLQS----NANCPLCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~WL~~----~~tCPlCR~~i 172 (347)
..-| ||..... ++.+ .--. |. ..||..|+. |.. +-.||.|+..-
T Consensus 36 ~~yC-iC~~~~~-g~MI-~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCC-CCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEe-EecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3457 9988643 4332 3334 55 579999997 332 33599997654
No 115
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.45 E-value=4.5 Score=29.93 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=30.6
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHH---------hcCCCCCcccCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL---------QSNANCPLCRTSI 172 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL---------~~~~tCPlCR~~i 172 (347)
..| ||...+..+..+. --.|..-||..|+..-. .....||.|+..-
T Consensus 17 ~~C-~C~~~~~~~~MI~-Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMIC-CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCSSCEEE-CSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCCCCEEE-eCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 457 8988876444443 33588899999985321 2356799997543
No 116
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.62 E-value=1.3 Score=34.53 Aligned_cols=47 Identities=28% Similarity=0.533 Sum_probs=31.6
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRTS 171 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~~ 171 (347)
...|.||...-.. +.+..-..|...||..|+.+=|.. .-.||.|...
T Consensus 16 ~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 16 SYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4569999876543 334455568999999999854332 2249999654
No 117
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=54.59 E-value=28 Score=22.53 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=11.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 019053 36 SAFPILAIAILSIMGTAFLLLSY 58 (347)
Q Consensus 36 ~~~~ilviiil~il~~~~lli~~ 58 (347)
.+--.+.-++++.++.+.++..+
T Consensus 8 ls~GaIAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 8 LTGGEIVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceeeeehHHHHHHHHHHHH
Confidence 33444455555555544444433
No 118
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=54.51 E-value=17 Score=24.20 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019053 45 ILSIMGTAFLLLSYYVFVSKC 65 (347)
Q Consensus 45 il~il~~~~lli~~~~~~~r~ 65 (347)
++++++.++++.++.+...||
T Consensus 14 i~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 14 LVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444433333343
No 119
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.74 E-value=2.5 Score=38.36 Aligned_cols=44 Identities=34% Similarity=0.685 Sum_probs=25.6
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhc-----CCCCCcccC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-----NANCPLCRT 170 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~tCPlCR~ 170 (347)
.|.+|...-. +..+...-.|...||..|+++=|.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4788865422 2334455568899999999954432 124999964
No 120
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=51.28 E-value=6.1 Score=31.36 Aligned_cols=48 Identities=23% Similarity=0.528 Sum_probs=33.3
Q ss_pred CcccccccccccCCceeecC-CCCccccHHHHHHHH----------hcCCCCCcccCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLP-NCSHAFHLDCIDIWL----------QSNANCPLCRTSI 172 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~WL----------~~~~tCPlCR~~i 172 (347)
..|.||...+.++.....-- .|.--||..|+..=- ...-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46999999986655554443 588889999975321 0334699997653
No 121
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.73 E-value=4.8 Score=30.04 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=30.2
Q ss_pred cCcccccccccccCCceeec-CCCCccccHHHHHHHHh---------cCCCCCcccCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVL-PNCSHAFHLDCIDIWLQ---------SNANCPLCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~CI~~WL~---------~~~tCPlCR~~i 172 (347)
...| ||-.....+..|.=- +.|..-||..|+.---. .+..||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 3567 898875555444322 04888999999864221 245699997643
No 122
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.85 E-value=2.1 Score=32.95 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=35.0
Q ss_pred cCccccccccccc-CCceeecCCCCccccHHHHHHHHhc--------CCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQE-QDMLRVLPNCSHAFHLDCIDIWLQS--------NANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~CI~~WL~~--------~~tCPlCR~~i~ 173 (347)
...|.||...-.. +..+..--.|...||..|+..=|.. .-.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3579999876432 3456666678999999999875531 235999977554
No 123
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=48.43 E-value=26 Score=23.57 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 019053 48 IMGTAFLLLS 57 (347)
Q Consensus 48 il~~~~lli~ 57 (347)
++++++++++
T Consensus 21 v~~~~ii~~~ 30 (44)
T 2ks1_B 21 LLLLLVVALG 30 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 124
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.71 E-value=9.3 Score=27.37 Aligned_cols=42 Identities=33% Similarity=0.790 Sum_probs=29.1
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHH-hcCCCCCcc
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL-QSNANCPLC 168 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL-~~~~tCPlC 168 (347)
..|--|...|.+.. ...-++|++.|+.+| |..+ ++=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 35999999885432 245678999999999 4443 223469988
No 125
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.66 E-value=11 Score=27.07 Aligned_cols=40 Identities=15% Similarity=0.384 Sum_probs=31.3
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..|+.|-..+..++.+.. -+..||.+| ..|-.|+..|...
T Consensus 10 ~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCCC
Confidence 569999999887766543 578899888 6799998888643
No 126
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=46.31 E-value=9.5 Score=30.48 Aligned_cols=46 Identities=26% Similarity=0.563 Sum_probs=28.7
Q ss_pred CccCcccccccccccCCceeecC--CCCccccHHHHHHHHhcC----CCCCcccCCCC
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLP--NCSHAFHLDCIDIWLQSN----ANCPLCRTSIS 173 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~WL~~~----~tCPlCR~~i~ 173 (347)
.....|.+|.+ .++ +..-. .|-..||..|+. |... -.||.|.-.+-
T Consensus 13 ~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 34567999973 233 33333 377899999998 5432 24887754443
No 127
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=46.16 E-value=12 Score=27.46 Aligned_cols=44 Identities=27% Similarity=0.570 Sum_probs=27.3
Q ss_pred cCcccccccccccCCceeecCC--CC-ccccHHHHHHHHhc----CCCCCcccCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPN--CS-HAFHLDCIDIWLQS----NANCPLCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~WL~~----~~tCPlCR~~i 172 (347)
..-| ||..... ++ ...--. |. ..||..|+. |.. .-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3457 8987642 43 333334 55 589999997 332 23599997644
No 128
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=45.91 E-value=58 Score=21.85 Aligned_cols=19 Identities=11% Similarity=0.280 Sum_probs=8.6
Q ss_pred chhHHHHHHHH-HHHHHHHH
Q 019053 37 AFPILAIAILS-IMGTAFLL 55 (347)
Q Consensus 37 ~~~ilviiil~-il~~~~ll 55 (347)
+.+.++..+++ +++.+++.
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVG 27 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEeehHHHHHHHHHH
Confidence 34445555554 44433333
No 129
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.72 E-value=11 Score=30.18 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=23.6
Q ss_pred Cccccccccccc------CCceeecCCCCccccHHHHHHH
Q 019053 125 YGCVVCLNEFQE------QDMLRVLPNCSHAFHLDCIDIW 158 (347)
Q Consensus 125 ~~C~ICl~~~~~------~~~~~~lp~C~H~FH~~CI~~W 158 (347)
..|.||+..-.. ++.+..-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 359999876421 2344444469999999999865
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.70 E-value=12 Score=26.39 Aligned_cols=40 Identities=18% Similarity=0.409 Sum_probs=29.4
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..|+-|-..+..++.+.. .-+..||..| .+|-.|..+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE--YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC--STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE--ECccccCccc--------CeECCCCCcCCC
Confidence 469999998887544432 2678899888 678899887764
No 131
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.85 E-value=14 Score=26.18 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=29.8
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..|+.|-..+..++.+... -+..||.+| ..|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCCC
Confidence 4699999998876544332 577899888 6788998877543
No 132
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.32 E-value=11 Score=27.15 Aligned_cols=38 Identities=18% Similarity=0.504 Sum_probs=22.8
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
.|+.|-..+..++.+.. -+..||.+| ..|-.|+..|..
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCCC
Confidence 36677776665554432 356677666 457777666653
No 133
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.27 E-value=12 Score=30.47 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=25.1
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHH
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI 157 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~ 157 (347)
+...|.+|...|..-..-..-..||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34679999999975433333346999999999544
No 134
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=42.99 E-value=13 Score=28.47 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=26.2
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHH
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL 159 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL 159 (347)
...|.+|...|..-..-..-..||++|+..|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 457999999997544333344699999999976653
No 135
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=42.88 E-value=4.3 Score=29.68 Aligned_cols=46 Identities=26% Similarity=0.632 Sum_probs=29.3
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHh---cCCCCCcccC
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ---SNANCPLCRT 170 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~tCPlCR~ 170 (347)
+...| ||...+..+..| .-..|..-||..|+..-.. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MI-qCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMI-ECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEE-ECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEE-ECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34568 998876533344 3345888899999864321 2345888864
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.00 E-value=3.1 Score=34.07 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=30.9
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT 170 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~ 170 (347)
...|..|-..|..-..-.....||.+||..|..........|-.|-.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 35799999998754333334469999999997766555566877744
No 137
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=41.21 E-value=14 Score=27.63 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=25.4
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHH
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI 157 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~ 157 (347)
+...|.+|...|..-..-..-..||.+|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34679999999975443333346999999999654
No 138
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=41.19 E-value=15 Score=27.67 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=26.5
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHHHHH
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW 158 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 158 (347)
.+...|.+|...|..-..-..-..||++|+..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456799999999764433333469999999996654
No 139
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.15 E-value=20 Score=25.97 Aligned_cols=41 Identities=22% Similarity=0.452 Sum_probs=30.8
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..|+.|-..+..++.+... -+..||.+| .+|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCCC
Confidence 5799999998876654332 578899888 6799998887643
No 140
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=40.71 E-value=19 Score=26.48 Aligned_cols=26 Identities=15% Similarity=0.005 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 019053 44 AILSIMGTAFLLLSYYVFVSKCCNNW 69 (347)
Q Consensus 44 iil~il~~~~lli~~~~~~~r~c~~~ 69 (347)
.++.+++.++.++++.-+.+.||-+|
T Consensus 9 ~~LivlGg~~~lll~~glcI~ccvkc 34 (70)
T 2klu_A 9 MALIVLGGVAGLLLFIGLGIFFSVRS 34 (70)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHH
Confidence 45678888889999999999977644
No 141
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.63 E-value=20 Score=26.42 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=31.4
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|+.|-..+...+.+.. -+..||..| ..|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 4579999998877665542 578899998 6788998887654
No 142
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.36 E-value=23 Score=25.01 Aligned_cols=39 Identities=26% Similarity=0.565 Sum_probs=27.2
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
..|+.|-..+...+.+... -+..||.+| ..|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 4688998877764433222 567888888 56888888874
No 143
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.19 E-value=19 Score=26.50 Aligned_cols=39 Identities=21% Similarity=0.554 Sum_probs=30.7
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
...|+-|-..+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 3569999999887766554 467899888 67999988875
No 144
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=40.10 E-value=12 Score=31.11 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=24.5
Q ss_pred ccCcccccccccc-cCCceeecCCCCccccHHHHH
Q 019053 123 SIYGCVVCLNEFQ-EQDMLRVLPNCSHAFHLDCID 156 (347)
Q Consensus 123 ~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~CI~ 156 (347)
+...|++|...|. ....-+.-..|+|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4578999999993 333344555699999988844
No 145
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.93 E-value=19 Score=25.44 Aligned_cols=40 Identities=30% Similarity=0.578 Sum_probs=29.2
Q ss_pred Cccccccccccc--CCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 125 YGCVVCLNEFQE--QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 125 ~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..|+-|-..+.. ++.+.. .-+..||.+| ..|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYIS--FEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEE--CSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcceEE--ECCcccCccc--------CEeccCCCcCCC
Confidence 469999998875 333322 2678999888 679999888863
No 146
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.90 E-value=18 Score=25.81 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=30.5
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|+-|-..+...+.+... -+..||..| ..|-.|...|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 35799999998765544322 577899888 6788898877643
No 147
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.65 E-value=78 Score=23.67 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019053 37 AFPILAIAILSIMGTAFLLLSYYVFVSKC 65 (347)
Q Consensus 37 ~~~ilviiil~il~~~~lli~~~~~~~r~ 65 (347)
.+.++..++.|++++.+++++++.++...
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454555556665566555555555443
No 148
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=38.64 E-value=2.8 Score=30.52 Aligned_cols=45 Identities=27% Similarity=0.581 Sum_probs=27.1
Q ss_pred CcccccccccccCCceeec-CCCCccccHHHHHHHH---h-----cCCCCCcccC
Q 019053 125 YGCVVCLNEFQEQDMLRVL-PNCSHAFHLDCIDIWL---Q-----SNANCPLCRT 170 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~CI~~WL---~-----~~~tCPlCR~ 170 (347)
..| ||-.....+..+.-- +.|..-||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 346 897766666544322 1388789999974210 0 1345999974
No 149
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=38.38 E-value=18 Score=27.70 Aligned_cols=50 Identities=22% Similarity=0.384 Sum_probs=32.4
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHh-------cCCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-------SNANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-------~~~tCPlCR~~i~ 173 (347)
...|.+|...|..-..-..-..||++|+..|....+. ....|-.|-..+.
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 4579999999976443333346999999999765421 1234666655444
No 150
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=36.12 E-value=4.8 Score=31.88 Aligned_cols=45 Identities=22% Similarity=0.530 Sum_probs=28.9
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRTS 171 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~~ 171 (347)
.|.||...-.. +.+..-..|...||..|+++=|.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 47778665333 334455568999999999864432 2248888553
No 151
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.33 E-value=19 Score=27.09 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=23.5
Q ss_pred CccCcccccccccccCCceeecCCCCccccHHHH
Q 019053 122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCI 155 (347)
Q Consensus 122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI 155 (347)
.+...|.+|...|..-..-..--.||.+|+..|.
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 3346799999999654322233359999999883
No 152
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.28 E-value=26 Score=25.08 Aligned_cols=40 Identities=28% Similarity=0.613 Sum_probs=28.9
Q ss_pred Cccccccccccc--CCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 125 YGCVVCLNEFQE--QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 125 ~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..|+.|-..+.. +..... . -+..||.+| ..|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~-a-~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC-F-QDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE-E-TTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEE-E-CCcccCccc--------CChhhCCCcCCC
Confidence 469999998875 333322 2 678899998 679999888863
No 153
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=34.72 E-value=64 Score=21.39 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=12.2
Q ss_pred CchhHHHHH-HHHHHHHHHHHHHHH
Q 019053 36 SAFPILAIA-ILSIMGTAFLLLSYY 59 (347)
Q Consensus 36 ~~~~ilvii-il~il~~~~lli~~~ 59 (347)
..+|++++. +.|+++.+++.++.|
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544 455555555555544
No 154
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.67 E-value=94 Score=21.73 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=11.9
Q ss_pred CchhHHHHHH-HHHHHHHHHHHHHH
Q 019053 36 SAFPILAIAI-LSIMGTAFLLLSYY 59 (347)
Q Consensus 36 ~~~~ilviii-l~il~~~~lli~~~ 59 (347)
..+|++++.+ .|+++.+++.++.|
T Consensus 10 vp~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544 45555444444444
No 155
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=34.12 E-value=22 Score=25.94 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=23.6
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHH
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI 157 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~ 157 (347)
..|.+|...|..-..-..-..||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 469999999875433233336999999999543
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.26 E-value=17 Score=32.52 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=25.7
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHH
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW 158 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 158 (347)
...|.+|...|.--..-.....||++||..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 35899999999765433344469999999996654
No 157
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.06 E-value=36 Score=25.30 Aligned_cols=41 Identities=24% Similarity=0.543 Sum_probs=30.9
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|+-|-..+...+.+. . -+..||.+| ..|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCCC
Confidence 356999999988766543 2 678899888 5688898877654
No 158
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=33.05 E-value=31 Score=33.41 Aligned_cols=47 Identities=19% Similarity=0.460 Sum_probs=29.0
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHh---cC--CCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ---SN--ANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~--~tCPlCR~~i~~~ 175 (347)
..|+|-...+... ++-.. |.|.-|.+ +..||+ .. -.||+|...+...
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCcccccccc--CcCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHH
Confidence 4588877776553 66665 99984333 233443 22 3499998877544
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.85 E-value=16 Score=32.26 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=25.1
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHH
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW 158 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W 158 (347)
...|.+|...|.--..-.....||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 36899999999754433334469999999995543
No 160
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.83 E-value=9.2 Score=36.91 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-------CCCCCcccCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-------NANCPLCRTSI 172 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-------~~tCPlCR~~i 172 (347)
...|.+|...|..-..-.....||++||..|-..++.. ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 46799999998754322233359999999998776421 23466664443
No 161
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=32.79 E-value=22 Score=24.75 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=30.9
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|+-|-..+..++.+... -+..||..| ..|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCC--------CcccCCCCCCCCC
Confidence 35699999998877655332 577899888 4788898877643
No 162
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=32.59 E-value=88 Score=21.91 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=11.7
Q ss_pred chhH-HHHHHHHHHHHHHHHHHHH
Q 019053 37 AFPI-LAIAILSIMGTAFLLLSYY 59 (347)
Q Consensus 37 ~~~i-lviiil~il~~~~lli~~~ 59 (347)
.+|+ ++.++.|+++.+++.++.|
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454 4444555555555555544
No 163
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=32.59 E-value=68 Score=21.22 Aligned_cols=9 Identities=44% Similarity=0.918 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 019053 45 ILSIMGTAF 53 (347)
Q Consensus 45 il~il~~~~ 53 (347)
++++++.++
T Consensus 13 v~gvi~~iv 21 (43)
T 2k9j_B 13 LLSVMGAIL 21 (43)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 164
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=32.04 E-value=9.1 Score=27.09 Aligned_cols=41 Identities=29% Similarity=0.646 Sum_probs=25.4
Q ss_pred CcccccccccccCCceeecCC--CC-ccccHHHHHHHHhc----CCCCCcccC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPN--CS-HAFHLDCIDIWLQS----NANCPLCRT 170 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~WL~~----~~tCPlCR~ 170 (347)
.-| ||.... .++ ...--. |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 346 897754 343 333334 65 689999998 332 235999864
No 165
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=31.99 E-value=19 Score=28.64 Aligned_cols=38 Identities=24% Similarity=0.600 Sum_probs=25.1
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
.|+.|-..+...+.+.. .-+..||..| ..|-.|...|.
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTT--------CBCTTTCCBCC
T ss_pred cccCCCCeecCCceEEE--ECCccccccc--------CccccCCCCCC
Confidence 58888877775443322 2567788777 56777877773
No 166
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=31.81 E-value=74 Score=20.85 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019053 40 ILAIAILSIMGTAFLLLSYYVFVS 63 (347)
Q Consensus 40 ilviiil~il~~~~lli~~~~~~~ 63 (347)
.++++++++++.++..++++.+.+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I 34 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677766665555444444
No 167
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=31.41 E-value=13 Score=27.07 Aligned_cols=40 Identities=23% Similarity=0.523 Sum_probs=29.7
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..|+.|-..+..++.+.. -+..||.+| ..|-.|...|...
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCCC
Confidence 569999998877765433 577899888 5688898877543
No 168
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=31.32 E-value=48 Score=25.33 Aligned_cols=39 Identities=15% Similarity=0.423 Sum_probs=28.2
Q ss_pred ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc
Q 019053 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS 161 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~ 161 (347)
....|.+|.+.+++.--+.--..=.|.||..|-...++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 346799999998876544321123699999999999865
No 169
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=30.93 E-value=36 Score=32.86 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=29.5
Q ss_pred CcccccccccccCCceeecCCCCcc--ccHHHHHHHHhcC--CCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHA--FHLDCIDIWLQSN--ANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~CI~~WL~~~--~tCPlCR~~i~~~ 175 (347)
..|+|-..-+... ++-.. |.|. |-..=+-...... -.||+|...+...
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 3588877766553 66665 9998 5433333333333 3499998877644
No 170
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=30.65 E-value=38 Score=28.93 Aligned_cols=37 Identities=22% Similarity=0.569 Sum_probs=26.2
Q ss_pred CCCccCcccccccccccCCceeecC--CCCccccHHHHHHHHh
Q 019053 120 EDMSIYGCVVCLNEFQEQDMLRVLP--NCSHAFHLDCIDIWLQ 160 (347)
Q Consensus 120 ~~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~WL~ 160 (347)
++..+..|.||-+. ..+..-. .|...|+.+||+.++.
T Consensus 75 eDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 75 DDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 33445779999653 3454444 5889999999999974
No 171
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=30.06 E-value=9.4 Score=27.04 Aligned_cols=41 Identities=29% Similarity=0.638 Sum_probs=24.9
Q ss_pred CcccccccccccCCceeecCC--CC-ccccHHHHHHHHhc----CCCCCcccC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPN--CS-HAFHLDCIDIWLQS----NANCPLCRT 170 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~CI~~WL~~----~~tCPlCR~ 170 (347)
.-| ||.... .++ ...--. |. ..||..|+. |.. .-.||.|+.
T Consensus 11 ~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 346 898753 243 333334 54 579999998 433 234998854
No 172
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.74 E-value=36 Score=24.71 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=29.4
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|+-|-..+. ++.+. .-+..||.+| .+|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCCC
Confidence 357999999887 33332 2678899888 6799998888643
No 173
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.42 E-value=27 Score=22.43 Aligned_cols=12 Identities=0% Similarity=0.396 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHH
Q 019053 38 FPILAIAILSIM 49 (347)
Q Consensus 38 ~~ilviiil~il 49 (347)
.+.++..++|++
T Consensus 7 ~~sIaagVvgll 18 (35)
T 1iij_A 7 VTFIIATVVGVL 18 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred CcEeHHHHHHHH
Confidence 455666666633
No 174
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=29.20 E-value=16 Score=26.79 Aligned_cols=47 Identities=19% Similarity=0.432 Sum_probs=29.9
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHh-----cCCCCCcccCCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-----SNANCPLCRTSI 172 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----~~~tCPlCR~~i 172 (347)
.-.||...+..+...+.--.|.--||..|+..--. ..-.||.|+..-
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 34488877654443444445888899999964321 235699997543
No 175
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.36 E-value=23 Score=24.55 Aligned_cols=38 Identities=16% Similarity=0.419 Sum_probs=28.2
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..|+.|-..+. ++.+ .. -+..||..| ..|-.|..+|..
T Consensus 6 ~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 46999998887 4432 32 678899888 679999888864
No 176
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.22 E-value=24 Score=27.93 Aligned_cols=12 Identities=25% Similarity=0.941 Sum_probs=10.7
Q ss_pred cccHHHHHHHHh
Q 019053 149 AFHLDCIDIWLQ 160 (347)
Q Consensus 149 ~FH~~CI~~WL~ 160 (347)
-||..|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 177
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=27.08 E-value=25 Score=27.86 Aligned_cols=12 Identities=33% Similarity=0.958 Sum_probs=10.7
Q ss_pred cccHHHHHHHHh
Q 019053 149 AFHLDCIDIWLQ 160 (347)
Q Consensus 149 ~FH~~CI~~WL~ 160 (347)
-||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 178
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.71 E-value=28 Score=27.94 Aligned_cols=38 Identities=18% Similarity=0.543 Sum_probs=29.6
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
..|+-|-..+.....+.. -+..||..| ..|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 579999998876543432 678899998 67999998886
No 179
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.63 E-value=46 Score=24.62 Aligned_cols=39 Identities=18% Similarity=0.422 Sum_probs=29.2
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
...|+.|-..+. ++.+. . -+..||.+| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 457999999884 33332 2 678999888 679999888864
No 180
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=26.49 E-value=6.8 Score=31.33 Aligned_cols=45 Identities=20% Similarity=0.601 Sum_probs=28.7
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRTS 171 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~~ 171 (347)
.|.||...-..+ .+..-..|...||..|+++=|.. .-.||.|+..
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 588887754333 34444468999999998853332 1238888543
No 181
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=26.41 E-value=43 Score=32.60 Aligned_cols=47 Identities=26% Similarity=0.595 Sum_probs=32.1
Q ss_pred CCccCcccccccccccCCceeecC--CCCccccHHHHHHHHhc----------CCCCCcccCC
Q 019053 121 DMSIYGCVVCLNEFQEQDMLRVLP--NCSHAFHLDCIDIWLQS----------NANCPLCRTS 171 (347)
Q Consensus 121 ~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~CI~~WL~~----------~~tCPlCR~~ 171 (347)
+..+..|.||-+. ..+.... .|...||.+||+.++.. .=.|=+|.-.
T Consensus 90 DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3445679999653 3344444 68899999999999821 2358888543
No 182
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.88 E-value=40 Score=28.46 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=23.2
Q ss_pred ccCcccccccccccC-CceeecCCCCccccHHHH
Q 019053 123 SIYGCVVCLNEFQEQ-DMLRVLPNCSHAFHLDCI 155 (347)
Q Consensus 123 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI 155 (347)
+...|++|...|.-- ..-.+-.+|+|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 467899999987431 123344469999999985
No 183
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.48 E-value=16 Score=29.13 Aligned_cols=26 Identities=19% Similarity=0.588 Sum_probs=16.4
Q ss_pred CCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 145 NCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 145 ~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
+||+.|. .=+.....||.|++.-...
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 4888881 1123346699998876544
No 184
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.28 E-value=42 Score=24.27 Aligned_cols=40 Identities=20% Similarity=0.427 Sum_probs=28.5
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..|+.|-..+..++.+.. .-+..||..| ..|-.|...|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccCC
Confidence 469999998884333322 2578899888 668899888763
No 185
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.98 E-value=50 Score=23.02 Aligned_cols=39 Identities=21% Similarity=0.632 Sum_probs=27.8
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..|+.|-..+.. +.+.. -+..||.+| ..|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIKA---MNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-CCEEE---TTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CcCccCCCEecc-eEEEE---CcccccccC--------CEeCCCCCcCCCC
Confidence 569999888763 33322 577899888 5788898887643
No 186
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.66 E-value=43 Score=24.14 Aligned_cols=39 Identities=21% Similarity=0.581 Sum_probs=28.6
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
..|+.|-..+. ++.+.. -+..||.+| ..|-.|...|...
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCCSS
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCCCC
Confidence 46999999887 333332 678899888 6799998887643
No 187
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=24.47 E-value=20 Score=21.80 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=20.1
Q ss_pred CcccccccccccCCceeecCCCCccccHHHH
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCI 155 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI 155 (347)
..|+.|-..+-..+.+.. -|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 359999888776655532 5788999884
No 188
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=24.32 E-value=16 Score=36.63 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=30.0
Q ss_pred cccccccccccCCceeecCCCCccccHHHHHHHHh-----cCCCCCcccCCC
Q 019053 126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-----SNANCPLCRTSI 172 (347)
Q Consensus 126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----~~~tCPlCR~~i 172 (347)
.| ||...+..+......-.|.--||..|+.---. ..-.||.|+..-
T Consensus 39 yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 39 YC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp ET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred EE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 35 99887754444444445888899999854321 234699997643
No 189
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.54 E-value=43 Score=23.83 Aligned_cols=40 Identities=18% Similarity=0.427 Sum_probs=28.6
Q ss_pred Cccccccccccc---CCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 125 YGCVVCLNEFQE---QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 125 ~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..|+-|-..+.. ...... . -+..||..| ..|-.|...|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEE-E-CcceeCccc--------CEehhcCCCCCC
Confidence 469999998884 223222 2 577899888 679999888864
No 190
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.25 E-value=21 Score=26.20 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=14.2
Q ss_pred HHHHhcCCCCCcccCCCCC
Q 019053 156 DIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 156 ~~WL~~~~tCPlCR~~i~~ 174 (347)
+.||..--.||.|+.++..
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 5567667789999988764
No 191
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.99 E-value=51 Score=22.91 Aligned_cols=38 Identities=29% Similarity=0.698 Sum_probs=27.6
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..|+.|-..+.. +.+ . .-+..||.+| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGV--T-YREQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-SEE--E-SSSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCcccCCeecc-ceE--E-ECccccCCCC--------CccCCCCCcCCc
Confidence 469999888864 333 2 2678899888 678899888753
No 192
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=22.95 E-value=12 Score=23.84 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=10.4
Q ss_pred cCcccccccccccCC
Q 019053 124 IYGCVVCLNEFQEQD 138 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~ 138 (347)
...|+||+.++...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 367888888776644
No 193
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.82 E-value=51 Score=24.34 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=29.5
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 175 (347)
...|+-|-+.+.. +.+ . .-+..||.+| ..|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVV--K-ARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS-CCE--E-SSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecc-cEE--E-ECCceECccC--------CEecCCCCCCCCC
Confidence 3579999998875 322 2 2678999988 6799998888643
No 194
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.76 E-value=41 Score=24.26 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=28.0
Q ss_pred cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
...|+-|-..+.. +.+ . .-+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFV--K-LRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SCE--E-CSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccC-cEE--E-ECcceeCcCc--------CeeCCCCCCCC
Confidence 3569999988875 322 2 2678999988 57889988775
No 195
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.39 E-value=66 Score=25.29 Aligned_cols=48 Identities=8% Similarity=0.020 Sum_probs=28.0
Q ss_pred Cccccccccccc-CCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053 125 YGCVVCLNEFQE-QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174 (347)
Q Consensus 125 ~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~ 174 (347)
..|..|-..+.+ +... .. .=+..||..|...-+.....|-.|...|..
T Consensus 33 F~C~~C~~~L~~~~~~~-~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeE-EE-ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 567777666642 1111 12 245667777777655444468888777764
No 196
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.94 E-value=73 Score=23.78 Aligned_cols=38 Identities=21% Similarity=0.543 Sum_probs=20.7
Q ss_pred Cccccccccccc-CCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 125 YGCVVCLNEFQE-QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
..|+.|-..+.. ++.+.. -+..||..| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 44 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHY---KNRFWHDTC--------FRCAKCLHPLA 44 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEE---TTEEEETTT--------CCCSSSCCCTT
T ss_pred CcCcccCCcccCCceEEEE---CccChhhcC--------CcccccCCCCC
Confidence 356777666654 222222 355666666 45666666553
No 197
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.67 E-value=49 Score=23.56 Aligned_cols=37 Identities=24% Similarity=0.527 Sum_probs=27.0
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
..|+-|-..+.. +.+ . .-+..||.+| .+|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~-~~v--~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL--E-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB--C-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE--E-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 468999888765 222 2 3678899888 67889988876
No 198
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.19 E-value=59 Score=22.55 Aligned_cols=37 Identities=24% Similarity=0.631 Sum_probs=26.6
Q ss_pred CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173 (347)
Q Consensus 125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~ 173 (347)
..|+-|-..+.. +.+.. -+..||.+| ..|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 468899888764 33332 567889888 56888988876
No 199
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=20.12 E-value=13 Score=27.84 Aligned_cols=19 Identities=26% Similarity=0.857 Sum_probs=15.4
Q ss_pred CCCccccHHHHHHHHhcCCCC
Q 019053 145 NCSHAFHLDCIDIWLQSNANC 165 (347)
Q Consensus 145 ~C~H~FH~~CI~~WL~~~~tC 165 (347)
.|+|.|+..|-..|-. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 5999999999999943 455
Done!