Query 019054
Match_columns 347
No_of_seqs 346 out of 3250
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 2.3E-83 5E-88 559.4 22.8 343 3-346 8-357 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 6E-57 1.3E-61 360.3 16.0 167 4-178 40-207 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 2.5E-56 5.4E-61 334.0 12.2 167 3-172 10-176 (177)
4 KOG0111 Cyclophilin-type pepti 100.0 2.9E-50 6.2E-55 326.5 9.5 164 1-173 134-297 (298)
5 PTZ00221 cyclophilin; Provisio 100.0 2.2E-48 4.7E-53 333.7 20.1 174 2-179 51-225 (249)
6 KOG0881 Cyclophilin type pepti 100.0 1.4E-49 3E-54 294.2 8.1 152 3-171 9-161 (164)
7 PLN03149 peptidyl-prolyl isome 100.0 9.6E-48 2.1E-52 321.0 17.9 170 1-173 16-186 (186)
8 cd01926 cyclophilin_ABH_like c 100.0 3.3E-47 7.2E-52 313.4 19.2 164 4-171 1-164 (164)
9 PTZ00060 cyclophilin; Provisio 100.0 3.5E-47 7.6E-52 317.4 19.3 170 1-173 13-182 (183)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 5E-46 1.1E-50 297.0 14.4 144 15-172 6-156 (158)
11 cd01923 cyclophilin_RING cyclo 100.0 7.5E-44 1.6E-48 291.5 17.7 156 6-178 2-158 (159)
12 cd01928 Cyclophilin_PPIL3_like 100.0 9.2E-44 2E-48 288.8 16.6 148 6-170 3-151 (153)
13 cd01927 cyclophilin_WD40 cyclo 100.0 1.5E-43 3.3E-48 286.2 15.9 143 15-169 4-147 (148)
14 cd01921 cyclophilin_RRM cyclop 100.0 9.1E-43 2E-47 287.4 17.0 153 15-179 4-165 (166)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 7E-43 1.5E-47 281.4 15.7 141 15-168 4-145 (146)
16 KOG0883 Cyclophilin type, U bo 100.0 4.2E-43 9.2E-48 306.5 10.5 151 15-177 284-435 (518)
17 KOG0865 Cyclophilin type pepti 100.0 6.2E-43 1.3E-47 281.3 10.3 164 1-173 1-167 (167)
18 KOG0884 Similar to cyclophilin 100.0 3.4E-42 7.3E-47 253.4 10.9 153 6-175 3-157 (161)
19 KOG0882 Cyclophilin-related pe 100.0 2.7E-42 5.9E-47 307.2 11.2 146 15-172 411-557 (558)
20 cd01925 cyclophilin_CeCYP16-li 100.0 3.3E-41 7.2E-46 278.9 16.8 158 5-179 7-166 (171)
21 PRK10903 peptidyl-prolyl cis-t 100.0 3.5E-40 7.5E-45 276.1 17.0 152 3-173 28-189 (190)
22 PRK10791 peptidyl-prolyl cis-t 100.0 2.6E-39 5.7E-44 265.0 16.2 149 6-173 2-163 (164)
23 cd01920 cyclophilin_EcCYP_like 100.0 1.6E-38 3.5E-43 258.9 15.3 141 15-169 4-154 (155)
24 KOG0885 Peptidyl-prolyl cis-tr 100.0 5.7E-38 1.2E-42 273.4 10.5 160 5-181 14-175 (439)
25 cd00317 cyclophilin cyclophili 100.0 2.8E-36 6E-41 245.2 16.0 140 16-168 5-145 (146)
26 cd01924 cyclophilin_TLP40_like 100.0 1.5E-36 3.3E-41 251.3 13.4 127 15-153 4-165 (176)
27 PF00160 Pro_isomerase: Cyclop 100.0 1.3E-35 2.8E-40 243.8 15.9 151 7-172 1-155 (155)
28 KOG0415 Predicted peptidyl pro 100.0 8.9E-36 1.9E-40 257.7 12.9 158 6-180 3-169 (479)
29 KOG0553 TPR repeat-containing 99.9 4.6E-22 1E-26 171.9 11.7 123 207-347 76-198 (304)
30 KOG0543 FKBP-type peptidyl-pro 99.9 8.5E-21 1.8E-25 170.5 15.5 143 201-346 197-339 (397)
31 KOG4234 TPR repeat-containing 99.8 2.3E-18 5E-23 140.3 11.9 128 205-345 88-215 (271)
32 KOG0545 Aryl-hydrocarbon recep 99.7 3.7E-17 8.1E-22 137.2 13.7 145 201-345 167-312 (329)
33 KOG0548 Molecular co-chaperone 99.7 1.6E-16 3.6E-21 146.7 11.0 117 210-344 356-472 (539)
34 PRK15359 type III secretion sy 99.6 1.8E-15 4E-20 122.3 12.2 115 214-346 26-140 (144)
35 PLN03088 SGT1, suppressor of 99.6 1.6E-15 3.4E-20 140.9 12.6 116 213-346 3-118 (356)
36 KOG4648 Uncharacterized conser 99.6 4.7E-16 1E-20 136.5 7.8 121 205-343 90-210 (536)
37 KOG0547 Translocase of outer m 99.6 4.5E-15 9.8E-20 135.6 10.7 122 203-342 106-228 (606)
38 PRK15363 pathogenicity island 99.5 1.3E-13 2.8E-18 110.3 12.8 105 211-333 34-138 (157)
39 KOG0548 Molecular co-chaperone 99.5 2.7E-14 5.9E-19 132.2 9.3 113 212-342 2-114 (539)
40 TIGR02552 LcrH_SycD type III s 99.5 1.7E-13 3.6E-18 109.5 12.1 117 211-345 16-132 (135)
41 KOG0550 Molecular chaperone (D 99.5 8.4E-14 1.8E-18 125.1 9.1 128 204-346 241-368 (486)
42 KOG4626 O-linked N-acetylgluco 99.4 7.7E-14 1.7E-18 130.9 5.5 119 209-345 283-401 (966)
43 KOG4626 O-linked N-acetylgluco 99.4 3.5E-13 7.6E-18 126.6 9.4 199 128-344 249-468 (966)
44 KOG0551 Hsp90 co-chaperone CNS 99.4 6.8E-13 1.5E-17 116.3 10.4 104 211-328 80-183 (390)
45 TIGR00990 3a0801s09 mitochondr 99.4 1.9E-12 4E-17 129.5 13.3 112 202-332 117-228 (615)
46 PRK10370 formate-dependent nit 99.4 2.1E-12 4.5E-17 110.0 11.6 118 205-340 66-186 (198)
47 PRK11189 lipoprotein NlpI; Pro 99.4 2.2E-12 4.9E-17 117.1 12.5 105 211-333 63-167 (296)
48 KOG4642 Chaperone-dependent E3 99.4 2.2E-12 4.7E-17 108.3 9.4 115 211-343 9-128 (284)
49 KOG0376 Serine-threonine phosp 99.4 3.4E-13 7.3E-18 124.0 4.9 118 211-346 3-120 (476)
50 PF13414 TPR_11: TPR repeat; P 99.4 2.2E-12 4.8E-17 90.4 7.2 67 263-329 2-69 (69)
51 TIGR00990 3a0801s09 mitochondr 99.3 1.2E-11 2.5E-16 123.7 13.1 116 210-343 329-444 (615)
52 TIGR02795 tol_pal_ybgF tol-pal 99.3 2.4E-11 5.2E-16 94.4 10.5 109 212-338 2-116 (119)
53 PRK15359 type III secretion sy 99.3 9.2E-11 2E-15 94.8 11.8 95 232-347 13-107 (144)
54 KOG1126 DNA-binding cell divis 99.2 8.1E-12 1.8E-16 118.5 6.3 135 211-345 420-570 (638)
55 KOG0624 dsRNA-activated protei 99.2 5.4E-11 1.2E-15 105.0 10.2 113 211-341 37-152 (504)
56 PRK15179 Vi polysaccharide bio 99.2 7.3E-11 1.6E-15 117.5 12.1 118 211-346 85-202 (694)
57 PRK02603 photosystem I assembl 99.2 2E-10 4.3E-15 95.9 12.8 109 209-332 32-154 (172)
58 KOG1155 Anaphase-promoting com 99.2 1.1E-10 2.3E-15 106.8 11.5 114 216-347 334-447 (559)
59 PF13414 TPR_11: TPR repeat; P 99.2 2.7E-11 5.8E-16 84.9 5.8 67 211-295 2-69 (69)
60 PF12895 Apc3: Anaphase-promot 99.2 6.6E-11 1.4E-15 86.4 7.8 81 225-324 2-84 (84)
61 KOG1173 Anaphase-promoting com 99.2 1.6E-10 3.4E-15 108.0 11.8 123 211-344 413-535 (611)
62 PF13432 TPR_16: Tetratricopep 99.2 9.7E-11 2.1E-15 81.0 7.9 65 268-332 1-65 (65)
63 PRK15331 chaperone protein Sic 99.2 2E-10 4.2E-15 92.5 10.5 115 211-344 36-150 (165)
64 PRK09782 bacteriophage N4 rece 99.2 1.3E-10 2.8E-15 120.0 12.1 113 212-342 609-721 (987)
65 PRK12370 invasion protein regu 99.2 1.7E-10 3.7E-15 113.7 12.2 93 224-334 316-408 (553)
66 PRK10370 formate-dependent nit 99.2 4.9E-10 1.1E-14 95.4 12.9 105 224-346 51-158 (198)
67 cd00189 TPR Tetratricopeptide 99.2 1.5E-10 3.3E-15 84.6 8.6 98 215-330 3-100 (100)
68 PRK12370 invasion protein regu 99.2 2.4E-10 5.1E-15 112.7 12.3 101 228-346 354-455 (553)
69 KOG1126 DNA-binding cell divis 99.2 1.1E-10 2.4E-15 110.9 9.4 171 159-347 419-606 (638)
70 KOG1155 Anaphase-promoting com 99.2 3.4E-10 7.3E-15 103.6 12.1 120 209-346 361-480 (559)
71 COG3063 PilF Tfp pilus assembl 99.2 1.7E-10 3.6E-15 96.9 9.3 115 212-344 69-185 (250)
72 KOG1125 TPR repeat-containing 99.1 1.5E-10 3.3E-15 108.4 8.9 117 212-346 430-556 (579)
73 CHL00033 ycf3 photosystem I as 99.1 9.9E-10 2.1E-14 91.3 12.9 108 210-332 33-154 (168)
74 PRK09782 bacteriophage N4 rece 99.1 4.9E-10 1.1E-14 115.9 13.0 104 224-346 588-691 (987)
75 KOG1308 Hsp70-interacting prot 99.1 5.4E-11 1.2E-15 105.1 4.4 151 159-342 75-225 (377)
76 KOG0547 Translocase of outer m 99.1 2.8E-10 6E-15 104.7 9.1 114 211-342 325-438 (606)
77 TIGR02521 type_IV_pilW type IV 99.1 1.2E-09 2.7E-14 94.2 12.7 132 212-343 31-180 (234)
78 TIGR02521 type_IV_pilW type IV 99.1 1.3E-09 2.8E-14 94.1 12.5 85 261-345 132-216 (234)
79 PRK11189 lipoprotein NlpI; Pro 99.1 2.6E-09 5.7E-14 97.0 14.0 108 224-345 38-145 (296)
80 TIGR03302 OM_YfiO outer membra 99.1 1.1E-09 2.4E-14 96.0 11.0 113 211-338 32-155 (235)
81 KOG0624 dsRNA-activated protei 99.1 3.9E-10 8.4E-15 99.7 7.8 121 212-346 269-389 (504)
82 TIGR02552 LcrH_SycD type III s 99.1 1.7E-09 3.7E-14 86.2 10.9 88 259-346 12-99 (135)
83 COG5010 TadD Flp pilus assembl 99.1 1.6E-09 3.4E-14 92.9 10.9 114 214-345 102-215 (257)
84 COG3063 PilF Tfp pilus assembl 99.1 2.1E-09 4.5E-14 90.4 11.3 113 211-342 34-149 (250)
85 PRK15174 Vi polysaccharide exp 99.0 1.4E-09 3.1E-14 109.2 11.9 110 213-340 247-360 (656)
86 PRK15174 Vi polysaccharide exp 99.0 1.7E-09 3.6E-14 108.7 12.3 111 218-346 218-332 (656)
87 PF13429 TPR_15: Tetratricopep 99.0 1.3E-09 2.7E-14 98.3 9.4 118 211-346 145-262 (280)
88 PRK10803 tol-pal system protei 99.0 4.8E-09 1E-13 92.9 12.6 111 213-341 143-260 (263)
89 PF13371 TPR_9: Tetratricopept 99.0 1.8E-09 4E-14 76.3 8.0 71 271-341 2-72 (73)
90 KOG4555 TPR repeat-containing 99.0 3.8E-09 8.2E-14 80.9 10.0 103 209-329 40-146 (175)
91 PLN02789 farnesyltranstransfer 99.0 5.2E-09 1.1E-13 95.5 12.5 117 209-343 68-187 (320)
92 KOG2003 TPR repeat-containing 99.0 3.6E-09 7.8E-14 96.7 10.3 117 211-345 489-605 (840)
93 PRK10049 pgaA outer membrane p 99.0 5.5E-09 1.2E-13 106.9 12.9 114 211-343 48-161 (765)
94 PRK15363 pathogenicity island 98.9 1.3E-08 2.9E-13 81.6 10.8 88 259-346 29-117 (157)
95 PRK11447 cellulose synthase su 98.9 8.1E-09 1.8E-13 110.3 12.0 129 209-342 300-429 (1157)
96 PF14559 TPR_19: Tetratricopep 98.9 4.3E-09 9.3E-14 73.3 6.5 67 275-341 2-68 (68)
97 PF13432 TPR_16: Tetratricopep 98.9 2.3E-09 5.1E-14 74.0 5.1 64 217-298 2-65 (65)
98 TIGR02917 PEP_TPR_lipo putativ 98.9 1.1E-08 2.4E-13 105.7 12.4 116 212-346 770-885 (899)
99 TIGR03302 OM_YfiO outer membra 98.9 1.2E-08 2.7E-13 89.3 10.9 116 213-346 71-217 (235)
100 PF13512 TPR_18: Tetratricopep 98.9 1.6E-08 3.5E-13 79.7 10.2 112 211-337 9-138 (142)
101 KOG2076 RNA polymerase III tra 98.9 1.9E-08 4.2E-13 98.8 12.8 117 211-345 138-254 (895)
102 PRK15179 Vi polysaccharide bio 98.9 1.5E-08 3.2E-13 101.2 12.1 119 205-341 113-232 (694)
103 PRK11447 cellulose synthase su 98.9 1.3E-08 2.9E-13 108.7 12.5 131 211-341 384-538 (1157)
104 TIGR02917 PEP_TPR_lipo putativ 98.9 1.7E-08 3.8E-13 104.3 12.8 115 211-343 124-238 (899)
105 COG4235 Cytochrome c biogenesi 98.9 2.3E-08 5.1E-13 87.8 11.0 119 205-341 149-270 (287)
106 PF06552 TOM20_plant: Plant sp 98.9 2.5E-08 5.5E-13 81.1 10.2 99 227-343 6-125 (186)
107 PRK11788 tetratricopeptide rep 98.8 3.8E-08 8.2E-13 92.8 12.7 99 215-331 183-282 (389)
108 PRK11788 tetratricopeptide rep 98.8 3.6E-08 7.7E-13 93.0 12.4 82 264-345 180-262 (389)
109 PLN02789 farnesyltranstransfer 98.8 6.3E-08 1.4E-12 88.4 13.3 106 222-345 47-155 (320)
110 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.2E-08 2.7E-13 94.6 8.2 69 259-327 70-141 (453)
111 PRK10049 pgaA outer membrane p 98.8 5E-08 1.1E-12 100.0 12.5 108 213-338 360-467 (765)
112 CHL00033 ycf3 photosystem I as 98.8 7.5E-08 1.6E-12 79.9 11.1 110 218-343 5-117 (168)
113 KOG4162 Predicted calmodulin-b 98.8 3.1E-08 6.8E-13 95.9 9.8 105 211-333 683-789 (799)
114 PF13525 YfiO: Outer membrane 98.8 6E-08 1.3E-12 83.1 10.7 120 211-345 4-140 (203)
115 KOG0553 TPR repeat-containing 98.8 4.1E-08 8.9E-13 85.9 9.6 83 263-345 80-162 (304)
116 KOG1129 TPR repeat-containing 98.8 1.8E-08 4E-13 88.7 7.4 87 259-345 353-442 (478)
117 PF13424 TPR_12: Tetratricopep 98.7 2.5E-08 5.4E-13 71.5 6.4 68 261-328 2-76 (78)
118 KOG0550 Molecular chaperone (D 98.7 6.1E-08 1.3E-12 87.9 10.1 127 210-342 201-331 (486)
119 PF14559 TPR_19: Tetratricopep 98.7 2.5E-08 5.3E-13 69.4 6.1 67 222-306 1-67 (68)
120 PRK10866 outer membrane biogen 98.7 1.2E-07 2.6E-12 83.4 11.9 120 211-345 31-174 (243)
121 COG1729 Uncharacterized protei 98.7 1.1E-07 2.5E-12 82.5 10.9 114 213-341 142-258 (262)
122 cd00189 TPR Tetratricopeptide 98.7 1.4E-07 3.1E-12 68.5 9.7 79 266-344 2-80 (100)
123 PF12688 TPR_5: Tetratrico pep 98.7 1.7E-07 3.6E-12 72.7 10.2 99 213-326 2-103 (120)
124 KOG1310 WD40 repeat protein [G 98.7 7.9E-08 1.7E-12 89.5 9.2 117 205-339 367-486 (758)
125 COG5010 TadD Flp pilus assembl 98.7 1.5E-07 3.2E-12 80.9 10.2 107 218-342 72-178 (257)
126 PF13424 TPR_12: Tetratricopep 98.7 7.4E-08 1.6E-12 69.0 7.1 74 210-294 3-76 (78)
127 PLN03088 SGT1, suppressor of 98.7 1.7E-07 3.7E-12 87.2 11.4 80 267-346 5-84 (356)
128 PF09976 TPR_21: Tetratricopep 98.7 1.4E-07 3.1E-12 76.3 9.4 98 212-325 48-145 (145)
129 PRK02603 photosystem I assembl 98.7 2.9E-07 6.2E-12 76.7 11.4 87 259-345 30-119 (172)
130 PRK14574 hmsH outer membrane p 98.7 1.7E-07 3.7E-12 95.4 11.8 111 212-340 34-144 (822)
131 COG4785 NlpI Lipoprotein NlpI, 98.7 1.4E-07 3E-12 78.8 9.1 113 211-341 64-176 (297)
132 COG4783 Putative Zn-dependent 98.7 2.6E-07 5.7E-12 85.7 11.6 115 214-346 308-422 (484)
133 PF13371 TPR_9: Tetratricopept 98.6 7E-08 1.5E-12 68.1 6.0 70 219-306 2-71 (73)
134 COG4783 Putative Zn-dependent 98.6 3.1E-07 6.7E-12 85.2 11.5 113 215-345 343-455 (484)
135 TIGR02795 tol_pal_ybgF tol-pal 98.6 5.1E-07 1.1E-11 69.7 10.9 81 265-345 3-89 (119)
136 KOG1128 Uncharacterized conser 98.6 1.5E-07 3.3E-12 90.8 8.8 109 211-337 484-592 (777)
137 KOG2002 TPR-containing nuclear 98.6 1.2E-07 2.6E-12 94.0 8.3 112 217-346 651-764 (1018)
138 PF13429 TPR_15: Tetratricopep 98.6 1.8E-07 3.9E-12 84.3 8.5 118 213-346 111-228 (280)
139 KOG1125 TPR repeat-containing 98.6 4.8E-07 1E-11 85.4 10.4 74 216-307 289-362 (579)
140 KOG2002 TPR-containing nuclear 98.6 5.1E-07 1.1E-11 89.7 11.0 118 211-343 269-387 (1018)
141 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 2.7E-07 5.8E-12 85.9 8.1 66 211-294 74-142 (453)
142 KOG3060 Uncharacterized conser 98.5 8.4E-07 1.8E-11 75.9 10.3 109 215-341 89-197 (289)
143 KOG1840 Kinesin light chain [C 98.5 1.1E-06 2.4E-11 84.3 11.4 125 212-346 241-381 (508)
144 PRK14574 hmsH outer membrane p 98.5 1.1E-06 2.3E-11 89.7 11.7 115 212-345 102-216 (822)
145 COG2956 Predicted N-acetylgluc 98.5 2.1E-06 4.5E-11 75.9 11.6 88 259-346 175-263 (389)
146 KOG2076 RNA polymerase III tra 98.5 1.3E-06 2.9E-11 86.2 11.4 101 211-329 172-272 (895)
147 KOG1840 Kinesin light chain [C 98.4 1.5E-06 3.3E-11 83.3 9.8 120 211-340 198-330 (508)
148 KOG0543 FKBP-type peptidyl-pro 98.4 1.2E-06 2.6E-11 79.9 8.0 98 214-329 259-357 (397)
149 cd05804 StaR_like StaR_like; a 98.4 1.8E-06 3.9E-11 80.3 9.5 100 212-329 114-217 (355)
150 PRK11906 transcriptional regul 98.4 4.8E-06 1E-10 77.8 11.9 99 225-341 271-381 (458)
151 PRK10153 DNA-binding transcrip 98.4 3.2E-06 6.9E-11 82.2 11.0 73 260-333 416-488 (517)
152 KOG1173 Anaphase-promoting com 98.3 1.1E-06 2.5E-11 82.7 7.4 115 210-342 310-424 (611)
153 PRK14720 transcript cleavage f 98.3 2.6E-06 5.7E-11 86.4 10.2 111 211-341 30-159 (906)
154 KOG1156 N-terminal acetyltrans 98.3 2.9E-06 6.4E-11 81.1 9.8 115 214-346 9-123 (700)
155 PF12688 TPR_5: Tetratrico pep 98.3 9.8E-06 2.1E-10 62.8 10.9 81 265-345 2-88 (120)
156 TIGR00540 hemY_coli hemY prote 98.3 1E-05 2.2E-10 77.1 13.4 116 211-344 83-199 (409)
157 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.9E-06 6.3E-11 79.2 8.6 101 216-334 204-304 (395)
158 PF00515 TPR_1: Tetratricopept 98.3 1.5E-06 3.3E-11 51.3 4.2 32 299-330 2-33 (34)
159 PRK10747 putative protoheme IX 98.3 1.8E-05 3.9E-10 75.0 13.7 116 211-344 83-199 (398)
160 PRK11906 transcriptional regul 98.2 9.1E-06 2E-10 75.9 10.9 91 224-332 316-406 (458)
161 PF14938 SNAP: Soluble NSF att 98.2 3.1E-05 6.7E-10 69.9 14.2 109 210-330 112-228 (282)
162 KOG4162 Predicted calmodulin-b 98.2 1.3E-05 2.8E-10 78.2 11.7 113 216-346 654-768 (799)
163 PF09976 TPR_21: Tetratricopep 98.2 3.1E-05 6.7E-10 62.5 12.1 119 211-345 10-131 (145)
164 KOG1174 Anaphase-promoting com 98.2 1.6E-05 3.4E-10 72.6 11.2 101 226-345 418-518 (564)
165 COG2956 Predicted N-acetylgluc 98.2 2.1E-05 4.6E-10 69.7 11.4 116 211-344 106-226 (389)
166 KOG3060 Uncharacterized conser 98.2 5E-05 1.1E-09 65.2 13.3 99 226-342 134-235 (289)
167 PF13428 TPR_14: Tetratricopep 98.2 4.6E-06 1E-10 52.5 5.4 41 299-339 2-42 (44)
168 COG4700 Uncharacterized protei 98.2 2.6E-05 5.6E-10 63.9 11.0 102 212-330 89-192 (251)
169 PF12895 Apc3: Anaphase-promot 98.2 2.5E-06 5.4E-11 62.0 4.7 69 277-346 2-72 (84)
170 PF13431 TPR_17: Tetratricopep 98.2 1.9E-06 4E-11 50.9 3.2 33 287-319 2-34 (34)
171 cd05804 StaR_like StaR_like; a 98.2 1.3E-05 2.9E-10 74.5 10.4 132 213-344 44-198 (355)
172 TIGR00540 hemY_coli hemY prote 98.2 1.4E-05 3E-10 76.1 10.6 114 211-343 262-381 (409)
173 PF07719 TPR_2: Tetratricopept 98.2 5.1E-06 1.1E-10 48.9 4.9 34 298-331 1-34 (34)
174 KOG1129 TPR repeat-containing 98.2 2.3E-06 4.9E-11 75.8 4.6 81 260-340 286-366 (478)
175 PF00515 TPR_1: Tetratricopept 98.1 3.9E-06 8.5E-11 49.5 4.1 34 264-297 1-34 (34)
176 PRK10803 tol-pal system protei 98.1 3E-05 6.6E-10 68.8 11.4 81 264-344 142-229 (263)
177 PRK10153 DNA-binding transcrip 98.1 2.8E-05 6E-10 75.7 11.9 115 212-345 339-466 (517)
178 PF13428 TPR_14: Tetratricopep 98.1 5.7E-06 1.2E-10 52.1 4.8 42 265-306 2-43 (44)
179 PF12968 DUF3856: Domain of Un 98.1 0.00013 2.9E-09 55.1 12.7 106 216-327 13-129 (144)
180 PF03704 BTAD: Bacterial trans 98.1 6.3E-05 1.4E-09 60.7 12.0 113 215-327 9-125 (146)
181 COG4235 Cytochrome c biogenesi 98.1 4.4E-05 9.6E-10 67.4 11.7 99 228-344 138-239 (287)
182 PRK15331 chaperone protein Sic 98.1 6.6E-05 1.4E-09 60.8 11.6 88 259-346 32-119 (165)
183 KOG1128 Uncharacterized conser 98.1 1.2E-05 2.6E-10 78.0 7.9 84 262-345 483-566 (777)
184 PF14938 SNAP: Soluble NSF att 98.0 2.4E-05 5.1E-10 70.6 9.3 106 211-329 74-186 (282)
185 KOG2003 TPR repeat-containing 98.0 4.9E-05 1.1E-09 70.2 11.1 113 210-340 522-634 (840)
186 PRK14720 transcript cleavage f 98.0 3E-05 6.6E-10 78.9 10.5 116 210-344 114-269 (906)
187 PF04733 Coatomer_E: Coatomer 98.0 2.9E-05 6.2E-10 70.1 9.3 103 221-341 140-244 (290)
188 PRK10747 putative protoheme IX 98.0 4.2E-05 9.2E-10 72.5 10.9 116 211-327 262-390 (398)
189 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 7.6E-05 1.6E-09 69.8 12.3 101 225-346 182-282 (395)
190 PF13525 YfiO: Outer membrane 98.0 0.00011 2.3E-09 63.0 12.3 116 211-341 41-184 (203)
191 KOG4648 Uncharacterized conser 98.0 9.4E-06 2E-10 72.4 5.6 70 267-336 100-169 (536)
192 PF14853 Fis1_TPR_C: Fis1 C-te 98.0 2.8E-05 6.2E-10 50.7 6.3 48 299-346 2-49 (53)
193 KOG1156 N-terminal acetyltrans 98.0 3.4E-05 7.4E-10 74.0 9.4 116 212-345 41-156 (700)
194 KOG4555 TPR repeat-containing 98.0 5.5E-05 1.2E-09 58.4 8.6 64 267-330 46-109 (175)
195 KOG1174 Anaphase-promoting com 98.0 4E-05 8.6E-10 70.0 9.1 109 212-338 300-408 (564)
196 PF13512 TPR_18: Tetratricopep 98.0 6.5E-05 1.4E-09 59.4 9.1 71 264-334 10-83 (142)
197 KOG1130 Predicted G-alpha GTPa 98.0 2.6E-05 5.6E-10 71.2 7.7 105 212-328 195-305 (639)
198 PF07719 TPR_2: Tetratricopept 97.9 2E-05 4.4E-10 46.3 4.5 34 264-297 1-34 (34)
199 KOG1127 TPR repeat-containing 97.9 3E-05 6.5E-10 77.7 7.9 80 266-345 564-643 (1238)
200 PRK10866 outer membrane biogen 97.9 0.0001 2.3E-09 64.8 9.8 73 263-335 31-106 (243)
201 PRK10941 hypothetical protein; 97.9 0.00024 5.1E-09 63.1 11.9 83 259-341 176-258 (269)
202 COG4105 ComL DNA uptake lipopr 97.8 0.0002 4.2E-09 62.1 10.6 119 211-344 33-165 (254)
203 PF12569 NARP1: NMDA receptor- 97.8 0.00017 3.7E-09 70.0 11.2 78 264-341 194-271 (517)
204 KOG0495 HAT repeat protein [RN 97.8 0.00011 2.5E-09 70.7 9.5 81 265-345 652-732 (913)
205 KOG1127 TPR repeat-containing 97.8 9.3E-05 2E-09 74.3 9.0 109 215-341 565-673 (1238)
206 KOG4234 TPR repeat-containing 97.8 9.7E-05 2.1E-09 61.3 7.5 76 211-304 133-208 (271)
207 COG1729 Uncharacterized protei 97.8 0.00028 6.1E-09 61.6 10.5 79 267-345 144-228 (262)
208 PF04733 Coatomer_E: Coatomer 97.8 0.00012 2.6E-09 66.1 8.6 94 227-338 182-276 (290)
209 PF15015 NYD-SP12_N: Spermatog 97.7 0.00054 1.2E-08 62.9 12.3 114 213-326 177-290 (569)
210 PF13181 TPR_8: Tetratricopept 97.7 6.5E-05 1.4E-09 44.1 4.1 32 299-330 2-33 (34)
211 KOG1130 Predicted G-alpha GTPa 97.7 0.00016 3.4E-09 66.3 8.2 105 212-328 235-345 (639)
212 KOG4151 Myosin assembly protei 97.6 0.00019 4.1E-09 70.7 8.1 127 203-343 44-172 (748)
213 KOG3785 Uncharacterized conser 97.6 9.1E-05 2E-09 66.5 5.3 109 218-344 63-197 (557)
214 KOG0495 HAT repeat protein [RN 97.5 0.00079 1.7E-08 65.1 10.9 112 215-344 654-765 (913)
215 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00032 6.9E-09 59.1 7.3 78 260-337 61-138 (297)
216 KOG4814 Uncharacterized conser 97.5 0.0008 1.7E-08 64.8 10.6 103 214-328 356-458 (872)
217 KOG4642 Chaperone-dependent E3 97.5 0.00018 4E-09 61.2 5.4 73 270-342 16-88 (284)
218 PF13431 TPR_17: Tetratricopep 97.5 8.4E-05 1.8E-09 43.8 2.4 34 234-285 1-34 (34)
219 PF09986 DUF2225: Uncharacteri 97.5 0.0058 1.3E-07 52.6 14.7 104 218-332 83-199 (214)
220 PF13181 TPR_8: Tetratricopept 97.5 0.00017 3.8E-09 42.2 3.7 33 265-297 2-34 (34)
221 KOG3364 Membrane protein invol 97.4 0.0034 7.3E-08 48.9 11.2 84 263-346 31-119 (149)
222 KOG1586 Protein required for f 97.4 0.0035 7.5E-08 53.5 11.8 107 212-330 113-227 (288)
223 KOG4340 Uncharacterized conser 97.4 0.00045 9.7E-09 60.9 6.7 94 211-322 143-265 (459)
224 COG2976 Uncharacterized protei 97.4 0.003 6.6E-08 52.4 10.9 102 212-329 89-190 (207)
225 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00076 1.6E-08 44.0 5.9 43 265-307 2-44 (53)
226 KOG2376 Signal recognition par 97.3 0.0029 6.4E-08 60.6 11.9 122 214-335 112-261 (652)
227 KOG4507 Uncharacterized conser 97.3 0.00093 2E-08 63.8 8.1 108 218-343 613-721 (886)
228 COG3071 HemY Uncharacterized e 97.3 0.0056 1.2E-07 56.1 12.7 119 210-346 82-201 (400)
229 KOG1941 Acetylcholine receptor 97.3 0.00063 1.4E-08 61.4 6.2 103 214-328 124-236 (518)
230 KOG0882 Cyclophilin-related pe 97.2 0.00064 1.4E-08 62.7 6.2 146 17-174 111-263 (558)
231 PF12569 NARP1: NMDA receptor- 97.2 0.0015 3.2E-08 63.6 9.1 97 214-328 196-292 (517)
232 PF13174 TPR_6: Tetratricopept 97.2 0.00058 1.3E-08 39.5 4.0 31 300-330 2-32 (33)
233 KOG3785 Uncharacterized conser 97.2 0.00082 1.8E-08 60.6 6.4 85 222-323 32-116 (557)
234 KOG2471 TPR repeat-containing 97.2 0.00056 1.2E-08 63.9 5.3 79 263-341 282-378 (696)
235 KOG3824 Huntingtin interacting 97.2 0.0015 3.3E-08 57.8 7.6 74 266-339 118-191 (472)
236 COG4105 ComL DNA uptake lipopr 97.2 0.0027 5.9E-08 55.1 9.1 72 263-334 33-107 (254)
237 KOG2796 Uncharacterized conser 97.2 0.0039 8.5E-08 54.2 9.6 115 214-340 214-331 (366)
238 PF13176 TPR_7: Tetratricopept 97.1 0.00043 9.3E-09 41.3 2.6 25 301-325 2-26 (36)
239 PF10300 DUF3808: Protein of u 97.1 0.0029 6.2E-08 61.2 9.7 107 209-329 264-378 (468)
240 PF13174 TPR_6: Tetratricopept 97.1 0.00078 1.7E-08 38.9 3.7 33 265-297 1-33 (33)
241 COG0457 NrfG FOG: TPR repeat [ 97.1 0.0079 1.7E-07 50.3 11.4 67 273-339 139-209 (291)
242 PF13176 TPR_7: Tetratricopept 97.1 0.00045 9.7E-09 41.2 2.4 29 266-294 1-29 (36)
243 KOG4340 Uncharacterized conser 97.1 0.0047 1E-07 54.6 9.5 101 223-345 21-121 (459)
244 KOG3081 Vesicle coat complex C 97.0 0.012 2.6E-07 51.3 11.5 66 278-343 187-252 (299)
245 COG3118 Thioredoxin domain-con 97.0 0.013 2.7E-07 52.0 11.6 113 214-344 136-284 (304)
246 PLN03081 pentatricopeptide (PP 97.0 0.0037 7.9E-08 63.8 9.3 64 264-327 494-557 (697)
247 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0047 1E-07 55.3 8.6 79 263-341 80-162 (390)
248 smart00028 TPR Tetratricopepti 96.9 0.0015 3.3E-08 36.7 3.9 30 300-329 3-32 (34)
249 PF06552 TOM20_plant: Plant sp 96.9 0.004 8.7E-08 51.1 7.4 65 280-344 7-81 (186)
250 COG2912 Uncharacterized conser 96.9 0.011 2.4E-07 51.9 10.4 77 259-335 176-252 (269)
251 COG0457 NrfG FOG: TPR repeat [ 96.9 0.012 2.7E-07 49.1 10.8 64 267-330 170-234 (291)
252 KOG2376 Signal recognition par 96.9 0.0099 2.2E-07 57.1 10.8 70 268-340 83-154 (652)
253 smart00028 TPR Tetratricopepti 96.8 0.002 4.3E-08 36.1 3.7 33 265-297 2-34 (34)
254 KOG0376 Serine-threonine phosp 96.8 0.00096 2.1E-08 62.5 3.2 65 267-331 7-71 (476)
255 KOG1941 Acetylcholine receptor 96.7 0.0068 1.5E-07 55.0 8.0 75 259-333 78-157 (518)
256 PF10602 RPN7: 26S proteasome 96.7 0.011 2.4E-07 49.2 9.0 100 212-326 36-141 (177)
257 KOG1308 Hsp70-interacting prot 96.7 0.00037 8E-09 62.5 0.1 70 275-344 125-194 (377)
258 COG3071 HemY Uncharacterized e 96.7 0.0095 2.1E-07 54.6 8.9 111 216-327 267-390 (400)
259 PF04184 ST7: ST7 protein; In 96.7 0.044 9.6E-07 52.0 13.0 111 227-337 215-335 (539)
260 PF05843 Suf: Suppressor of fo 96.6 0.013 2.9E-07 52.7 9.4 107 218-342 7-117 (280)
261 COG4976 Predicted methyltransf 96.6 0.0039 8.5E-08 53.0 4.9 61 273-333 4-64 (287)
262 COG4700 Uncharacterized protei 96.5 0.051 1.1E-06 45.0 11.1 65 266-330 91-156 (251)
263 PF14561 TPR_20: Tetratricopep 96.5 0.017 3.7E-07 42.3 7.7 63 283-345 7-71 (90)
264 KOG3081 Vesicle coat complex C 96.5 0.049 1.1E-06 47.6 11.5 75 260-334 203-278 (299)
265 KOG2053 Mitochondrial inherita 96.5 0.024 5.1E-07 57.0 10.6 91 222-330 19-109 (932)
266 KOG2471 TPR repeat-containing 96.4 0.0095 2.1E-07 56.0 6.8 96 214-310 285-381 (696)
267 PRK04841 transcriptional regul 96.3 0.023 5E-07 59.8 10.4 99 217-328 457-561 (903)
268 KOG1586 Protein required for f 96.3 0.052 1.1E-06 46.5 10.2 111 213-336 75-192 (288)
269 PRK04841 transcriptional regul 96.3 0.028 6.1E-07 59.1 10.6 103 214-328 493-603 (903)
270 KOG3824 Huntingtin interacting 96.2 0.0067 1.5E-07 53.8 4.7 79 211-307 115-193 (472)
271 TIGR03268 methan_mark_3 putati 96.2 0.019 4.2E-07 54.2 8.0 104 17-152 200-303 (503)
272 PF03704 BTAD: Bacterial trans 96.2 0.14 3.1E-06 40.9 12.2 79 268-346 10-110 (146)
273 KOG1585 Protein required for f 96.1 0.11 2.4E-06 44.9 11.4 111 212-335 31-147 (308)
274 PRK00969 hypothetical protein; 96.1 0.021 4.6E-07 54.1 7.6 104 17-152 203-306 (508)
275 KOG2796 Uncharacterized conser 96.1 0.057 1.2E-06 47.2 9.4 114 211-341 176-295 (366)
276 KOG1915 Cell cycle control pro 96.1 0.066 1.4E-06 50.4 10.5 102 214-333 75-176 (677)
277 TIGR03268 methan_mark_3 putati 96.1 0.04 8.6E-07 52.1 9.1 113 19-152 376-495 (503)
278 KOG0545 Aryl-hydrocarbon recep 96.1 0.027 5.8E-07 48.6 7.3 72 214-303 232-303 (329)
279 PLN03077 Protein ECB2; Provisi 96.0 0.052 1.1E-06 56.9 10.9 62 265-326 658-719 (857)
280 KOG2610 Uncharacterized conser 96.0 0.019 4.2E-07 51.6 6.3 95 215-323 140-234 (491)
281 PF08631 SPO22: Meiosis protei 96.0 0.32 7E-06 43.7 14.4 121 205-329 28-152 (278)
282 PF04781 DUF627: Protein of un 95.9 0.032 6.9E-07 42.1 6.3 96 218-328 2-108 (111)
283 KOG2396 HAT (Half-A-TPR) repea 95.8 0.28 6.2E-06 46.6 13.6 93 228-338 87-180 (568)
284 PF13374 TPR_10: Tetratricopep 95.8 0.019 4.2E-07 34.8 4.1 29 265-293 3-31 (42)
285 PF04184 ST7: ST7 protein; In 95.7 0.049 1.1E-06 51.7 8.2 110 214-339 261-387 (539)
286 PLN03218 maturation of RBCL 1; 95.7 0.15 3.4E-06 54.2 12.6 29 212-240 542-570 (1060)
287 COG4070 Predicted peptidyl-pro 95.6 0.036 7.8E-07 50.6 6.7 107 14-152 199-305 (512)
288 PLN03218 maturation of RBCL 1; 95.6 0.16 3.5E-06 54.0 12.5 26 214-239 509-534 (1060)
289 PF10516 SHNi-TPR: SHNi-TPR; 95.6 0.025 5.5E-07 34.0 3.9 29 299-327 2-30 (38)
290 PF10579 Rapsyn_N: Rapsyn N-te 95.6 0.054 1.2E-06 38.1 6.0 68 211-293 5-72 (80)
291 COG4976 Predicted methyltransf 95.5 0.021 4.6E-07 48.7 4.7 60 220-297 3-62 (287)
292 PF09613 HrpB1_HrpK: Bacterial 95.5 0.51 1.1E-05 38.3 12.4 109 213-342 11-120 (160)
293 KOG2610 Uncharacterized conser 95.5 0.16 3.5E-06 45.9 10.2 113 214-344 105-221 (491)
294 COG3629 DnrI DNA-binding trans 95.5 0.41 9E-06 42.7 12.8 70 258-327 147-216 (280)
295 PRK00969 hypothetical protein; 95.5 0.099 2.1E-06 49.7 9.3 112 19-152 379-497 (508)
296 PF04910 Tcf25: Transcriptiona 95.5 0.15 3.2E-06 47.7 10.4 104 224-333 6-139 (360)
297 PRK10941 hypothetical protein; 95.4 0.065 1.4E-06 47.7 7.7 78 213-308 182-259 (269)
298 PLN03081 pentatricopeptide (PP 95.4 0.097 2.1E-06 53.5 9.9 128 212-341 391-537 (697)
299 KOG1915 Cell cycle control pro 95.3 0.25 5.4E-06 46.7 11.0 99 224-341 449-549 (677)
300 PF09613 HrpB1_HrpK: Bacterial 95.3 0.35 7.5E-06 39.3 10.6 86 261-346 7-92 (160)
301 PF10300 DUF3808: Protein of u 95.2 0.15 3.2E-06 49.4 10.1 78 259-336 262-343 (468)
302 PF05843 Suf: Suppressor of fo 95.1 0.34 7.4E-06 43.6 11.5 104 216-337 39-146 (280)
303 PF13374 TPR_10: Tetratricopep 95.1 0.055 1.2E-06 32.7 4.5 31 298-328 2-32 (42)
304 PF12862 Apc5: Anaphase-promot 95.0 0.082 1.8E-06 39.0 6.0 64 223-295 9-72 (94)
305 PLN03077 Protein ECB2; Provisi 95.0 0.21 4.6E-06 52.4 11.2 131 211-343 553-702 (857)
306 PF14561 TPR_20: Tetratricopep 94.8 0.36 7.9E-06 35.3 8.9 55 259-313 17-73 (90)
307 COG3947 Response regulator con 94.8 0.2 4.2E-06 44.5 8.4 70 257-326 272-341 (361)
308 PF12968 DUF3856: Domain of Un 94.7 0.22 4.8E-06 38.1 7.4 73 214-293 57-129 (144)
309 PF02259 FAT: FAT domain; Int 94.6 0.33 7.2E-06 44.8 10.4 116 215-330 187-341 (352)
310 COG4070 Predicted peptidyl-pro 94.5 0.17 3.6E-06 46.4 7.5 114 19-152 377-498 (512)
311 KOG1585 Protein required for f 94.2 0.32 6.9E-06 42.2 8.3 96 215-323 74-175 (308)
312 PF08631 SPO22: Meiosis protei 94.1 1.2 2.6E-05 40.0 12.5 104 222-335 3-124 (278)
313 PF10952 DUF2753: Protein of u 94.1 0.3 6.4E-06 37.5 7.0 116 215-340 4-124 (140)
314 KOG0686 COP9 signalosome, subu 94.0 0.21 4.6E-06 46.2 7.4 96 214-324 152-255 (466)
315 KOG2053 Mitochondrial inherita 94.0 0.26 5.7E-06 49.9 8.5 106 215-339 46-151 (932)
316 KOG2300 Uncharacterized conser 94.0 1.5 3.2E-05 41.8 12.8 99 211-328 366-475 (629)
317 COG5191 Uncharacterized conser 94.0 0.13 2.7E-06 46.1 5.6 82 260-341 103-185 (435)
318 PF12862 Apc5: Anaphase-promot 94.0 0.29 6.2E-06 36.1 6.8 58 273-330 7-73 (94)
319 KOG3364 Membrane protein invol 93.8 0.27 5.9E-06 38.5 6.5 78 214-307 34-114 (149)
320 PHA02537 M terminase endonucle 93.8 1.7 3.7E-05 37.7 12.1 119 221-346 92-225 (230)
321 PF09986 DUF2225: Uncharacteri 93.7 0.56 1.2E-05 40.3 9.0 91 211-306 117-208 (214)
322 PRK13184 pknD serine/threonine 93.5 0.35 7.5E-06 50.5 8.8 104 218-337 481-591 (932)
323 COG3898 Uncharacterized membra 93.5 1.3 2.9E-05 41.0 11.4 98 212-327 120-217 (531)
324 PF07720 TPR_3: Tetratricopept 93.5 0.28 6.1E-06 29.1 4.8 33 299-331 2-36 (36)
325 KOG1070 rRNA processing protei 93.2 0.33 7.2E-06 51.5 8.0 64 264-327 1600-1663(1710)
326 COG3914 Spy Predicted O-linked 93.2 1.1 2.4E-05 43.6 10.8 104 221-342 76-186 (620)
327 KOG4814 Uncharacterized conser 93.0 0.46 1E-05 46.6 8.1 74 265-338 355-434 (872)
328 PF06957 COPI_C: Coatomer (COP 93.0 0.73 1.6E-05 43.6 9.3 123 211-336 203-338 (422)
329 KOG1070 rRNA processing protei 92.9 1.1 2.5E-05 47.7 11.2 66 265-330 1531-1596(1710)
330 PF10516 SHNi-TPR: SHNi-TPR; 92.8 0.18 3.8E-06 30.3 3.3 30 265-294 2-31 (38)
331 COG0790 FOG: TPR repeat, SEL1 92.7 2.3 5E-05 38.2 12.1 105 213-339 110-230 (292)
332 PF07079 DUF1347: Protein of u 92.7 0.41 8.8E-06 45.1 7.0 71 270-344 468-542 (549)
333 PF02259 FAT: FAT domain; Int 92.5 1.3 2.8E-05 40.8 10.5 120 211-344 145-304 (352)
334 TIGR02561 HrpB1_HrpK type III 92.2 2.3 5E-05 34.1 9.7 78 267-344 13-90 (153)
335 PF10373 EST1_DNA_bind: Est1 D 92.1 0.65 1.4E-05 41.4 7.7 62 283-344 1-62 (278)
336 KOG4507 Uncharacterized conser 92.1 0.21 4.7E-06 48.3 4.5 102 216-333 216-318 (886)
337 COG2976 Uncharacterized protei 92.0 2 4.3E-05 36.1 9.5 103 218-323 37-151 (207)
338 PF08424 NRDE-2: NRDE-2, neces 91.8 3.3 7E-05 38.1 12.0 83 259-341 14-108 (321)
339 KOG3617 WD40 and TPR repeat-co 91.8 0.91 2E-05 46.0 8.6 65 263-327 857-941 (1416)
340 PF07721 TPR_4: Tetratricopept 91.8 0.27 5.9E-06 26.6 3.0 23 300-322 3-25 (26)
341 KOG2422 Uncharacterized conser 91.7 2.6 5.5E-05 41.1 11.1 117 216-338 239-383 (665)
342 PF13281 DUF4071: Domain of un 91.3 5.1 0.00011 37.4 12.5 85 261-345 138-230 (374)
343 KOG1550 Extracellular protein 90.8 2.6 5.6E-05 41.9 10.9 100 212-326 244-356 (552)
344 TIGR03504 FimV_Cterm FimV C-te 90.7 1.2 2.7E-05 27.6 5.5 24 302-325 3-26 (44)
345 PF13281 DUF4071: Domain of un 90.7 3.7 8E-05 38.3 11.0 69 263-331 178-259 (374)
346 cd02681 MIT_calpain7_1 MIT: do 90.6 0.98 2.1E-05 31.8 5.6 34 211-244 5-38 (76)
347 KOG1310 WD40 repeat protein [G 90.5 0.77 1.7E-05 44.1 6.5 71 276-346 386-459 (758)
348 COG3898 Uncharacterized membra 90.5 4.1 8.9E-05 38.0 10.9 57 278-335 243-299 (531)
349 PF04212 MIT: MIT (microtubule 90.2 1 2.2E-05 30.9 5.5 38 210-247 3-40 (69)
350 TIGR02561 HrpB1_HrpK type III 90.0 7.3 0.00016 31.3 10.7 57 259-315 39-95 (153)
351 KOG1550 Extracellular protein 89.9 3.8 8.2E-05 40.7 11.3 92 215-328 291-394 (552)
352 PF04781 DUF627: Protein of un 89.8 1.6 3.6E-05 33.0 6.6 70 270-339 2-85 (111)
353 PF07720 TPR_3: Tetratricopept 89.7 1.1 2.3E-05 26.5 4.4 33 265-297 2-36 (36)
354 PF10602 RPN7: 26S proteasome 89.6 11 0.00023 31.4 13.1 81 260-340 32-117 (177)
355 KOG3617 WD40 and TPR repeat-co 89.5 1.4 3.1E-05 44.6 7.7 113 215-327 861-996 (1416)
356 PF10579 Rapsyn_N: Rapsyn N-te 89.3 3.5 7.5E-05 29.2 7.4 58 270-327 12-72 (80)
357 cd02683 MIT_1 MIT: domain cont 89.3 1.5 3.2E-05 31.0 5.7 36 211-246 5-40 (77)
358 PF07721 TPR_4: Tetratricopept 89.2 0.55 1.2E-05 25.4 2.8 24 265-288 2-25 (26)
359 PF10373 EST1_DNA_bind: Est1 D 89.2 1.4 3.1E-05 39.2 7.1 62 231-310 1-62 (278)
360 PF10255 Paf67: RNA polymerase 88.9 0.82 1.8E-05 43.1 5.4 61 266-326 124-192 (404)
361 PF11817 Foie-gras_1: Foie gra 88.8 5.2 0.00011 35.2 10.3 64 260-323 174-243 (247)
362 COG2912 Uncharacterized conser 88.2 1.5 3.1E-05 38.8 6.1 73 217-307 186-258 (269)
363 COG4455 ImpE Protein of avirul 88.1 3.5 7.7E-05 35.3 8.0 61 273-333 10-70 (273)
364 PF04910 Tcf25: Transcriptiona 88.1 5.6 0.00012 37.2 10.4 85 212-296 40-135 (360)
365 PF12903 DUF3830: Protein of u 87.8 2.5 5.4E-05 33.8 6.7 106 18-151 8-129 (147)
366 COG0790 FOG: TPR repeat, SEL1 87.1 14 0.00031 33.0 12.3 83 227-332 170-271 (292)
367 cd02678 MIT_VPS4 MIT: domain c 87.1 2.3 4.9E-05 29.8 5.6 37 209-245 3-39 (75)
368 PF11817 Foie-gras_1: Foie gra 87.0 1.8 3.8E-05 38.2 6.1 66 215-292 181-246 (247)
369 PF14863 Alkyl_sulf_dimr: Alky 87.0 1.8 3.9E-05 34.5 5.6 52 265-316 71-122 (141)
370 KOG2581 26S proteasome regulat 86.7 8.9 0.00019 35.9 10.4 72 262-333 207-282 (493)
371 KOG2047 mRNA splicing factor [ 86.6 9 0.00019 38.1 10.9 71 259-329 506-581 (835)
372 cd02679 MIT_spastin MIT: domai 86.5 3.9 8.5E-05 29.0 6.4 67 209-275 5-74 (79)
373 PF10345 Cohesin_load: Cohesin 86.4 11 0.00024 38.0 12.1 111 212-322 301-428 (608)
374 cd02680 MIT_calpain7_2 MIT: do 86.3 4 8.7E-05 28.6 6.3 35 210-244 4-38 (75)
375 COG2909 MalT ATP-dependent tra 86.3 14 0.0003 38.1 12.4 106 214-328 417-527 (894)
376 KOG2300 Uncharacterized conser 86.2 11 0.00024 36.2 10.9 102 223-328 286-397 (629)
377 COG3118 Thioredoxin domain-con 86.2 3.6 7.8E-05 36.8 7.5 54 270-323 140-193 (304)
378 cd02677 MIT_SNX15 MIT: domain 85.9 3.3 7E-05 29.1 5.8 36 210-245 4-39 (75)
379 KOG2047 mRNA splicing factor [ 85.7 13 0.00029 36.9 11.5 113 215-341 390-520 (835)
380 cd02684 MIT_2 MIT: domain cont 85.6 2.8 6.1E-05 29.4 5.4 36 210-245 4-39 (75)
381 COG3914 Spy Predicted O-linked 85.4 5.2 0.00011 39.1 8.7 69 270-338 73-142 (620)
382 PF10345 Cohesin_load: Cohesin 85.3 16 0.00035 36.8 12.8 118 211-341 58-184 (608)
383 PF11207 DUF2989: Protein of u 85.0 4.6 0.0001 34.1 7.3 54 264-318 141-198 (203)
384 smart00745 MIT Microtubule Int 85.0 3.9 8.5E-05 28.6 6.0 39 210-248 6-44 (77)
385 PF07079 DUF1347: Protein of u 84.4 3.3 7.2E-05 39.2 6.7 58 214-290 464-521 (549)
386 PF15015 NYD-SP12_N: Spermatog 84.3 6.3 0.00014 37.1 8.3 70 277-346 196-276 (569)
387 PF14863 Alkyl_sulf_dimr: Alky 84.3 5.1 0.00011 32.0 6.9 50 297-346 69-118 (141)
388 KOG0530 Protein farnesyltransf 83.9 18 0.0004 32.0 10.5 113 201-337 38-152 (318)
389 TIGR03504 FimV_Cterm FimV C-te 83.8 2.1 4.5E-05 26.6 3.6 26 268-293 3-28 (44)
390 cd02681 MIT_calpain7_1 MIT: do 83.5 2.1 4.5E-05 30.1 3.9 28 265-292 7-34 (76)
391 KOG1839 Uncharacterized protei 83.4 3.6 7.8E-05 43.9 7.2 106 211-327 931-1044(1236)
392 cd02682 MIT_AAA_Arch MIT: doma 83.2 5.4 0.00012 28.0 5.8 28 264-291 6-33 (75)
393 smart00386 HAT HAT (Half-A-TPR 83.1 3.6 7.8E-05 22.7 4.3 29 313-341 2-30 (33)
394 cd02656 MIT MIT: domain contai 83.0 4.5 9.7E-05 28.2 5.6 37 210-246 4-40 (75)
395 KOG1839 Uncharacterized protei 82.9 2.8 6.1E-05 44.6 6.2 108 211-328 972-1087(1236)
396 KOG0529 Protein geranylgeranyl 82.7 22 0.00048 33.4 11.2 102 224-343 87-194 (421)
397 cd02682 MIT_AAA_Arch MIT: doma 82.6 6.7 0.00014 27.5 6.1 28 280-307 29-56 (75)
398 KOG0546 HSP90 co-chaperone CPR 82.5 0.64 1.4E-05 42.4 1.2 80 217-314 280-359 (372)
399 PF08424 NRDE-2: NRDE-2, neces 82.1 17 0.00036 33.4 10.4 86 225-328 44-132 (321)
400 KOG0292 Vesicle coat complex C 80.9 18 0.00039 37.4 10.5 129 209-337 988-1123(1202)
401 KOG1464 COP9 signalosome, subu 80.1 18 0.00039 32.2 9.2 106 217-328 150-261 (440)
402 PRK15180 Vi polysaccharide bio 80.1 8.3 0.00018 37.0 7.6 80 223-320 300-379 (831)
403 KOG2041 WD40 repeat protein [G 79.5 6.6 0.00014 39.3 7.0 27 295-321 849-875 (1189)
404 PF11846 DUF3366: Domain of un 79.1 11 0.00024 31.6 7.7 53 280-333 127-179 (193)
405 KOG1258 mRNA processing protei 78.5 73 0.0016 31.5 13.6 104 213-334 298-402 (577)
406 COG4649 Uncharacterized protei 78.0 39 0.00084 28.1 11.0 101 212-326 94-195 (221)
407 cd02680 MIT_calpain7_2 MIT: do 77.1 4.9 0.00011 28.2 4.1 24 269-292 11-34 (75)
408 COG3629 DnrI DNA-binding trans 77.0 5.4 0.00012 35.7 5.3 63 212-292 153-215 (280)
409 PF00244 14-3-3: 14-3-3 protei 76.3 9.4 0.0002 33.4 6.6 71 212-292 123-197 (236)
410 KOG0530 Protein farnesyltransf 74.7 26 0.00056 31.1 8.6 82 262-343 145-232 (318)
411 PF09205 DUF1955: Domain of un 74.3 32 0.00069 27.2 8.1 61 267-327 88-149 (161)
412 PF11207 DUF2989: Protein of u 73.8 3.9 8.5E-05 34.6 3.4 59 211-284 140-198 (203)
413 KOG1914 mRNA cleavage and poly 73.2 16 0.00034 35.7 7.5 69 259-328 15-83 (656)
414 PF10255 Paf67: RNA polymerase 73.1 6 0.00013 37.4 4.8 113 218-340 128-243 (404)
415 KOG0985 Vesicle coat protein c 72.8 28 0.00061 36.8 9.5 103 215-343 1197-1324(1666)
416 TIGR02710 CRISPR-associated pr 72.8 38 0.00083 31.8 9.9 60 216-288 134-195 (380)
417 COG5191 Uncharacterized conser 72.4 2.8 6.1E-05 37.8 2.3 69 216-302 111-180 (435)
418 COG4941 Predicted RNA polymera 72.3 31 0.00067 31.7 8.7 78 265-342 330-409 (415)
419 KOG0529 Protein geranylgeranyl 71.7 59 0.0013 30.7 10.7 63 279-341 90-154 (421)
420 smart00386 HAT HAT (Half-A-TPR 71.4 11 0.00024 20.5 4.1 29 278-306 1-29 (33)
421 PF10952 DUF2753: Protein of u 70.8 41 0.00089 26.1 7.9 78 267-344 4-105 (140)
422 PF09670 Cas_Cas02710: CRISPR- 70.7 49 0.0011 31.2 10.4 99 213-327 132-270 (379)
423 cd09241 BRO1_ScRim20-like Prot 70.2 41 0.00089 31.4 9.7 118 209-326 103-265 (355)
424 KOG4459 Membrane-associated pr 70.0 14 0.0003 35.2 6.3 119 214-342 33-177 (471)
425 cd09240 BRO1_Alix Protein-inte 69.2 58 0.0013 30.3 10.4 118 209-326 116-283 (346)
426 COG3947 Response regulator con 69.1 14 0.00031 33.1 5.9 48 298-345 279-326 (361)
427 KOG3783 Uncharacterized conser 68.6 46 0.001 32.5 9.6 65 266-330 451-523 (546)
428 KOG1463 26S proteasome regulat 68.4 49 0.0011 30.5 9.2 115 212-341 209-327 (411)
429 cd02684 MIT_2 MIT: domain cont 67.9 11 0.00023 26.4 4.1 13 312-324 20-32 (75)
430 KOG3616 Selective LIM binding 67.6 35 0.00076 34.8 8.7 25 299-323 766-790 (1636)
431 KOG2396 HAT (Half-A-TPR) repea 67.6 45 0.00098 32.3 9.2 59 225-301 118-177 (568)
432 cd09243 BRO1_Brox_like Protein 67.3 75 0.0016 29.6 10.6 119 208-326 105-276 (353)
433 PF04212 MIT: MIT (microtubule 67.2 14 0.0003 25.1 4.5 19 308-326 15-33 (69)
434 PRK13184 pknD serine/threonine 67.2 79 0.0017 33.6 11.7 68 265-334 553-627 (932)
435 COG4455 ImpE Protein of avirul 66.8 74 0.0016 27.6 9.4 102 221-340 10-129 (273)
436 PF03097 BRO1: BRO1-like domai 66.5 65 0.0014 30.1 10.4 118 208-327 103-268 (377)
437 PF04053 Coatomer_WDAD: Coatom 66.5 11 0.00024 36.2 5.2 77 225-317 322-408 (443)
438 KOG0739 AAA+-type ATPase [Post 65.8 22 0.00047 32.3 6.4 37 209-245 7-43 (439)
439 PF15469 Sec5: Exocyst complex 65.8 12 0.00026 31.1 4.7 20 223-242 97-116 (182)
440 PF12739 TRAPPC-Trs85: ER-Golg 65.8 58 0.0013 31.1 10.0 102 214-327 210-329 (414)
441 KOG2422 Uncharacterized conser 65.5 1.1E+02 0.0023 30.5 11.3 87 212-298 284-377 (665)
442 cd09239 BRO1_HD-PTP_like Prote 65.1 1.2E+02 0.0025 28.5 11.5 119 207-326 109-280 (361)
443 KOG4014 Uncharacterized conser 64.9 78 0.0017 26.6 8.9 82 225-328 86-198 (248)
444 PRK15180 Vi polysaccharide bio 64.5 54 0.0012 31.8 9.0 63 282-344 760-822 (831)
445 PF01239 PPTA: Protein prenylt 63.4 19 0.00042 20.0 3.9 27 283-309 2-28 (31)
446 COG5091 SGT1 Suppressor of G2 63.1 12 0.00027 33.0 4.3 54 279-332 54-113 (368)
447 cd02683 MIT_1 MIT: domain cont 63.1 17 0.00037 25.6 4.3 26 266-291 8-33 (77)
448 PF12854 PPR_1: PPR repeat 62.7 22 0.00048 20.3 4.1 25 298-322 7-31 (34)
449 cd02677 MIT_SNX15 MIT: domain 62.4 11 0.00023 26.5 3.2 15 312-326 20-34 (75)
450 cd09034 BRO1_Alix_like Protein 62.1 78 0.0017 29.2 9.9 103 225-327 134-280 (345)
451 cd02679 MIT_spastin MIT: domai 62.0 19 0.0004 25.6 4.4 21 271-291 15-35 (79)
452 KOG1464 COP9 signalosome, subu 61.1 29 0.00062 31.0 6.2 51 276-326 39-93 (440)
453 KOG2561 Adaptor protein NUB1, 60.6 39 0.00084 32.2 7.2 110 211-327 162-296 (568)
454 COG4649 Uncharacterized protei 60.5 34 0.00074 28.4 6.1 51 259-310 162-212 (221)
455 COG2178 Predicted RNA-binding 60.3 1E+02 0.0023 26.0 9.7 100 211-322 28-145 (204)
456 PF08238 Sel1: Sel1 repeat; I 59.9 22 0.00048 20.5 4.0 15 313-327 23-37 (39)
457 PF07219 HemY_N: HemY protein 59.3 59 0.0013 24.4 7.1 50 263-312 58-107 (108)
458 smart00745 MIT Microtubule Int 58.3 17 0.00037 25.3 3.7 25 267-291 11-35 (77)
459 smart00671 SEL1 Sel1-like repe 57.6 29 0.00063 19.5 4.2 28 300-327 3-34 (36)
460 smart00101 14_3_3 14-3-3 homol 57.6 38 0.00083 29.7 6.5 71 212-292 125-199 (244)
461 COG2909 MalT ATP-dependent tra 57.5 50 0.0011 34.3 8.0 83 218-313 464-552 (894)
462 PF01535 PPR: PPR repeat; Int 57.0 19 0.00042 19.3 3.2 25 267-291 3-27 (31)
463 KOG0276 Vesicle coat complex C 57.0 46 0.001 33.1 7.3 28 213-240 667-694 (794)
464 KOG3807 Predicted membrane pro 56.6 1.7E+02 0.0036 27.1 10.6 97 228-324 232-337 (556)
465 PF05053 Menin: Menin; InterP 56.6 90 0.0019 30.9 9.2 83 263-345 276-371 (618)
466 cd09246 BRO1_Alix_like_1 Prote 56.6 1E+02 0.0022 28.7 9.6 117 210-326 109-275 (353)
467 PF04190 DUF410: Protein of un 56.6 1E+02 0.0022 27.3 9.2 97 212-321 10-113 (260)
468 KOG3783 Uncharacterized conser 55.8 48 0.001 32.4 7.2 96 212-324 267-372 (546)
469 PF04053 Coatomer_WDAD: Coatom 55.3 22 0.00047 34.3 5.0 65 272-341 326-398 (443)
470 KOG0985 Vesicle coat protein c 54.8 1E+02 0.0022 33.0 9.6 105 217-328 1053-1163(1666)
471 PF07219 HemY_N: HemY protein 54.0 27 0.00059 26.2 4.5 33 208-240 55-87 (108)
472 KOG0890 Protein kinase of the 53.4 79 0.0017 36.6 9.2 102 212-333 1670-1790(2382)
473 cd02656 MIT MIT: domain contai 53.3 24 0.00052 24.4 3.8 25 267-291 9-33 (75)
474 KOG1497 COP9 signalosome, subu 51.7 2E+02 0.0043 26.5 11.9 85 259-344 98-192 (399)
475 cd00280 TRFH Telomeric Repeat 51.5 1.5E+02 0.0032 25.0 8.7 51 269-320 116-166 (200)
476 KOG4563 Cell cycle-regulated h 51.0 32 0.0007 31.8 5.0 68 208-285 37-104 (400)
477 PRK11619 lytic murein transgly 50.9 65 0.0014 32.8 7.8 56 271-326 319-374 (644)
478 COG2015 Alkyl sulfatase and re 50.8 69 0.0015 31.0 7.3 55 265-319 453-507 (655)
479 PF07163 Pex26: Pex26 protein; 50.3 1.9E+02 0.0042 26.0 9.8 114 218-336 41-155 (309)
480 KOG3807 Predicted membrane pro 50.1 2.1E+02 0.0046 26.5 10.0 107 215-341 278-405 (556)
481 TIGR00756 PPR pentatricopeptid 49.5 39 0.00085 18.4 3.8 25 267-291 3-27 (35)
482 PF02064 MAS20: MAS20 protein 49.5 47 0.001 25.7 5.1 27 269-295 68-94 (121)
483 cd09245 BRO1_UmRIM23-like Prot 49.1 2.3E+02 0.005 27.1 10.8 30 298-327 296-325 (413)
484 COG5187 RPN7 26S proteasome re 48.9 1.2E+02 0.0026 27.5 8.1 104 211-328 114-222 (412)
485 PF08626 TRAPPC9-Trs120: Trans 48.0 1.2E+02 0.0027 33.3 9.9 34 210-243 240-273 (1185)
486 cd02678 MIT_VPS4 MIT: domain c 47.7 43 0.00094 23.2 4.4 16 310-325 18-33 (75)
487 PF12753 Nro1: Nuclear pore co 47.3 27 0.00058 32.8 4.0 14 314-327 378-391 (404)
488 KOG4014 Uncharacterized conser 47.2 1.4E+02 0.003 25.2 7.6 52 274-327 178-233 (248)
489 COG5290 IkappaB kinase complex 47.0 69 0.0015 33.0 6.9 28 301-328 938-965 (1243)
490 COG5187 RPN7 26S proteasome re 47.0 93 0.002 28.2 7.1 67 262-328 113-185 (412)
491 PF10938 YfdX: YfdX protein; 46.5 1.4E+02 0.003 24.2 7.7 110 217-326 7-145 (155)
492 PF08311 Mad3_BUB1_I: Mad3/BUB 46.4 1.4E+02 0.003 23.2 10.2 61 259-325 64-126 (126)
493 PF11846 DUF3366: Domain of un 46.4 91 0.002 26.0 7.0 33 263-295 143-175 (193)
494 KOG2041 WD40 repeat protein [G 46.0 63 0.0014 32.8 6.5 71 259-341 791-861 (1189)
495 PF02184 HAT: HAT (Half-A-TPR) 45.6 49 0.0011 19.0 3.4 23 280-303 3-25 (32)
496 PF09205 DUF1955: Domain of un 45.5 71 0.0015 25.4 5.5 34 260-293 116-149 (161)
497 PF13812 PPR_3: Pentatricopept 45.0 47 0.001 18.2 3.6 26 266-291 3-28 (34)
498 PF02561 FliS: Flagellar prote 45.0 1.3E+02 0.0029 23.0 7.2 68 208-275 25-94 (122)
499 KOG1914 mRNA cleavage and poly 44.4 1.5E+02 0.0033 29.3 8.5 58 272-329 443-503 (656)
500 KOG2114 Vacuolar assembly/sort 44.2 64 0.0014 33.4 6.3 32 212-243 368-399 (933)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-83 Score=559.42 Aligned_cols=343 Identities=55% Similarity=0.835 Sum_probs=316.4
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
||+|||||+|+|.+.||||||||.|+||+||+||+.||+|.++.+..+|++|+|+|+.|||||++|||||||++.++|+|
T Consensus 8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG 87 (372)
T KOG0546|consen 8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG 87 (372)
T ss_pred CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence 89999999999999999999999999999999999999999997778999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (347)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~ 162 (347)
|.||||.+|+||||.++|+++++|||||.||||||||||||+.++|||||+|+|||+|+.|++||+.|+++.++....|.
T Consensus 88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~ 167 (372)
T KOG0546|consen 88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL 167 (372)
T ss_pred cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cceEeccceecCCC----CCCCCCCcCCCCCCCCCCCCCCCCC-cchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHH
Q 019054 163 ADVTITDCGEIPEG----ADDGISNFFNDGDSYPDWPADLDQT-PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRK 237 (347)
Q Consensus 163 ~~v~I~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~ 237 (347)
.+|+|.+||++... ..+.....++.++.++++|.++..+ ..+..+.++.+...++.|+..|++++|..|...|.+
T Consensus 168 ~dV~I~dCGel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k 247 (372)
T KOG0546|consen 168 ADVVISDCGELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRK 247 (372)
T ss_pred cceEecccccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHH
Confidence 99999999999877 5677777899999999999776553 456667788889999999999999999999999999
Q ss_pred HHHHhhhccccCCCChhh--hhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHH
Q 019054 238 ALRYLDICWEKEGIDEGK--SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD 315 (347)
Q Consensus 238 al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~ 315 (347)
++++..+ .+........ ..........++.|++.|-++++.+..|+..+..+++.+++..+++|++++++..+.+++
T Consensus 248 ~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~ 326 (372)
T KOG0546|consen 248 ALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYD 326 (372)
T ss_pred Hhhhhcc-cccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchh
Confidence 9999886 3322222221 244666777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 316 AAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 316 ~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|+++++.+....|++.++...+..+++.++
T Consensus 327 ~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 327 EALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred hhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 9999999999999999999999988877653
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-57 Score=360.28 Aligned_cols=167 Identities=63% Similarity=1.065 Sum_probs=159.7
Q ss_pred CeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhc-cCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCT-GEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 4 ~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~-~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
..|||||.++++..|||+|.||+..+|+||+||++||. +.++. .|.|+.||||||+|||||||++.++|+|
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~--------gY~gS~FhRVi~nfmIQGGd~t~g~gtG 111 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGY--------GYKGSKFHRVIPNFMIQGGDFTKGDGTG 111 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCc--------ccCCceeeeeecCceeecCccccCCCCC
Confidence 37999999999999999999999999999999999999 55544 4999999999999999999999999999
Q ss_pred CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (347)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~ 162 (347)
+.||||.+|+||||.++|+++|.|||||.|||+||||||||+...|||||+|+|||+|++||+++.+|+.+.+++.++|.
T Consensus 112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~ 191 (217)
T KOG0880|consen 112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL 191 (217)
T ss_pred CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeccceecCCCCC
Q 019054 163 ADVTITDCGEIPEGAD 178 (347)
Q Consensus 163 ~~v~I~~~g~~~~~~~ 178 (347)
.++.|.+|+.++....
T Consensus 192 e~v~I~~~g~l~~~~~ 207 (217)
T KOG0880|consen 192 EDVVIANCGELPVEYL 207 (217)
T ss_pred ccEEEeecCcccccch
Confidence 9999999998865443
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-56 Score=333.97 Aligned_cols=167 Identities=58% Similarity=0.995 Sum_probs=162.2
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
||.|||||+|+|.+.|||.||||.|.+|+|++||++.|+|+- ..+|+|+.|++++|||||++|||||||+..++|+|
T Consensus 10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~---r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG 86 (177)
T KOG0879|consen 10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEY---RKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_pred CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccc---ccCCccccccccchHHHhhhheeccCceecCCCce
Confidence 899999999999999999999999999999999999999873 24689999999999999999999999999999999
Q ss_pred CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (347)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~ 162 (347)
..||||.+|+||||.++|.++|+|||||+|+++||.|||||..++.+||++|+|||+|++|+.++++|+++++..+.+|.
T Consensus 87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK 166 (177)
T KOG0879|consen 87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK 166 (177)
T ss_pred EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEecccee
Q 019054 163 ADVTITDCGE 172 (347)
Q Consensus 163 ~~v~I~~~g~ 172 (347)
.+|+|..||.
T Consensus 167 l~v~i~qCGe 176 (177)
T KOG0879|consen 167 LPVVIVQCGE 176 (177)
T ss_pred CcEEEeeccc
Confidence 9999999985
No 4
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-50 Score=326.54 Aligned_cols=164 Identities=59% Similarity=1.015 Sum_probs=159.7
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (347)
|.||.||+++.|++...|||+++|..|..|+|++||+.||.+.+++| |+|++||||||.||+||||++.++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence 67999999999999999999999999999999999999999999886 9999999999999999999999999
Q ss_pred CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
+||.||||.+|.||||.|+|+.+|+|||||+|+|+|||||||++....|||++|+|||.|++|++|++++++..+.+ +.
T Consensus 206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsks-gk 284 (298)
T KOG0111|consen 206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKS-GK 284 (298)
T ss_pred CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876 89
Q ss_pred cccceEeccceec
Q 019054 161 PIADVTITDCGEI 173 (347)
Q Consensus 161 P~~~v~I~~~g~~ 173 (347)
|...|.|..||.+
T Consensus 285 p~qkv~i~~cge~ 297 (298)
T KOG0111|consen 285 PQQKVKIVECGEI 297 (298)
T ss_pred cceEEEEEecccc
Confidence 9999999999875
No 5
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.2e-48 Score=333.74 Aligned_cols=174 Identities=38% Similarity=0.616 Sum_probs=159.8
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecC-ceEEeccCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKG-FMIQGGDISAGDG 80 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~-~~iq~G~~~~~~~ 80 (347)
.+|+|||||+|+|.+.|+|+||||.+.||+||+||++||++.++.+...|+.++|+||.||||+++ |+|||||+..
T Consensus 51 ~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~--- 127 (249)
T PTZ00221 51 NSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS--- 127 (249)
T ss_pred CCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---
Confidence 379999999999999999999999999999999999999988765544566678999999999986 8999999863
Q ss_pred CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
++.++||.+|+||++.++|+++|+|+|++.|||++|||||||+.+.|+||++|+|||+|++||++|++|++++++..++
T Consensus 128 -~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~gr 206 (249)
T PTZ00221 128 -FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGR 206 (249)
T ss_pred -CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence 2457789999999999999999999999999999999999999999999999999999999999999999999887899
Q ss_pred cccceEeccceecCCCCCC
Q 019054 161 PIADVTITDCGEIPEGADD 179 (347)
Q Consensus 161 P~~~v~I~~~g~~~~~~~~ 179 (347)
|..+|+|.+|+++..+.+.
T Consensus 207 P~~~V~I~~Cgvl~~~~p~ 225 (249)
T PTZ00221 207 PLLPVTVSFCGALTGEKPP 225 (249)
T ss_pred CCCCeEEEECeEecCCCCC
Confidence 9999999999999876554
No 6
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-49 Score=294.18 Aligned_cols=152 Identities=54% Similarity=0.866 Sum_probs=145.4
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
-|.|+++++ .|.|++|||-..||+||.||..|++.+ ||+|+.|||||++|||||||++ ++|.|
T Consensus 9 ~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrg-----------YYn~v~FHRii~DFmiQGGDPT-GTGRG 71 (164)
T KOG0881|consen 9 PPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRG-----------YYNGVIFHRIIKDFMIQGGDPT-GTGRG 71 (164)
T ss_pred CCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhcc-----------cccceeeeehhhhheeecCCCC-CCCCC
Confidence 368999998 699999999999999999999999998 9999999999999999999998 89999
Q ss_pred CCcccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054 83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (347)
Q Consensus 83 ~~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P 161 (347)
|.||||.+|+||-. +++|...|+|||||.|||+|||||||||.+.+||||+|++||||..||+|+..+..+.++..++|
T Consensus 72 GaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRP 151 (164)
T KOG0881|consen 72 GASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRP 151 (164)
T ss_pred ccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCC
Confidence 99999999999955 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEeccce
Q 019054 162 IADVTITDCG 171 (347)
Q Consensus 162 ~~~v~I~~~g 171 (347)
..++.|....
T Consensus 152 i~~~kIika~ 161 (164)
T KOG0881|consen 152 IDEVKIIKAY 161 (164)
T ss_pred ccceeeEeee
Confidence 9999987654
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=9.6e-48 Score=320.98 Aligned_cols=170 Identities=59% Similarity=0.970 Sum_probs=157.4
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (347)
|.||+|||||++++++.|+|+||||.+.+|+||+||++||+++... .|.++.|++|.||||+|+|+|||||+..++|
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g 92 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence 4589999999999999999999999999999999999999876321 1333459999999999999999999887889
Q ss_pred CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEE-eChHHHHHHhcccCCCCC
Q 019054 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDND 159 (347)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~-~g~~vl~~I~~~~~~~~~ 159 (347)
+|+.++||..|++|++.++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|+ +||+++++|++++++..+
T Consensus 93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~ 172 (186)
T PLN03149 93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN 172 (186)
T ss_pred CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 799999999999998889
Q ss_pred ccccceEeccceec
Q 019054 160 CPIADVTITDCGEI 173 (347)
Q Consensus 160 ~P~~~v~I~~~g~~ 173 (347)
+|..+|+|.+||.+
T Consensus 173 ~P~~~i~I~~cG~~ 186 (186)
T PLN03149 173 RPKLACVISECGEM 186 (186)
T ss_pred CCcCCeEEEeCEeC
Confidence 99999999999874
No 8
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=3.3e-47 Score=313.42 Aligned_cols=164 Identities=68% Similarity=1.149 Sum_probs=153.4
Q ss_pred CeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCC
Q 019054 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG 83 (347)
Q Consensus 4 ~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~ 83 (347)
|+||||++++|++.|+|+||||.+.||+||+||++||++.++.+ .+..||++|.||||+|+|+|||||+..++|+++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~---~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG---GKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCc---ccccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 78999999999999999999999999999999999998754322 134489999999999999999999887788999
Q ss_pred CcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcccc
Q 019054 84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA 163 (347)
Q Consensus 84 ~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~ 163 (347)
.++||..|++|++.++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|++++++ +++|..
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~ 156 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK 156 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred ceEeccce
Q 019054 164 DVTITDCG 171 (347)
Q Consensus 164 ~v~I~~~g 171 (347)
+|+|.+||
T Consensus 157 ~i~I~~cG 164 (164)
T cd01926 157 KVVIADCG 164 (164)
T ss_pred CeEEEECC
Confidence 99999986
No 9
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=3.5e-47 Score=317.43 Aligned_cols=170 Identities=62% Similarity=1.018 Sum_probs=157.8
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (347)
|.||+||||++++|++.|+|+||||.+.||+||+||++||++...+. .|+..+|+||.||||+|+++|||||+..++|
T Consensus 13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence 45899999999999999999999999999999999999999764422 3556699999999999999999999987789
Q ss_pred CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
+++.++||..+++|++.++|.++|+|+|++.++++++|||||++.+.|+||++|+|||+|++||+++++|+.+++. .+.
T Consensus 91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~ 169 (183)
T PTZ00060 91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGY 169 (183)
T ss_pred CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998875 478
Q ss_pred cccceEeccceec
Q 019054 161 PIADVTITDCGEI 173 (347)
Q Consensus 161 P~~~v~I~~~g~~ 173 (347)
|..+|.|.+|+++
T Consensus 170 P~~~v~I~~cg~~ 182 (183)
T PTZ00060 170 PKKPVVVTDCGEL 182 (183)
T ss_pred CcCCeEEEEeEEc
Confidence 9999999999986
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-46 Score=297.00 Aligned_cols=144 Identities=53% Similarity=0.848 Sum_probs=130.1
Q ss_pred eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (347)
Q Consensus 15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (347)
++.|+|+||||++.||+||+||++||+.+ ||+|+.||||||+|||||||++.++|+|++ +.+|++|
T Consensus 6 t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g-----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E 71 (158)
T COG0652 6 TNKGDITIELYPDKAPKTVANFLQLVKEG-----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDE 71 (158)
T ss_pred ccCCCEEEEECCCcCcHHHHHHHHHHHcC-----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccc
Confidence 55899999999999999999999999977 999999999999999999999987789888 4889999
Q ss_pred ccccCCCC--ccEEEeeeCC-CCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCC----CccccceEe
Q 019054 95 NFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTI 167 (347)
Q Consensus 95 ~~~~~~~~--~g~~~~~~~~-~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~----~~P~~~v~I 167 (347)
++...|.+ +|+|||||.+ ||||+|||||++.+.|+||++|+|||+|++||++|++|++..+... ..|..++.|
T Consensus 72 ~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i 151 (158)
T COG0652 72 NFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKI 151 (158)
T ss_pred ccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEE
Confidence 99888887 9999999999 9999999999999999999999999999999999999999877653 345566666
Q ss_pred cccee
Q 019054 168 TDCGE 172 (347)
Q Consensus 168 ~~~g~ 172 (347)
.+..+
T Consensus 152 ~~~~~ 156 (158)
T COG0652 152 LSVKI 156 (158)
T ss_pred eeeee
Confidence 65443
No 11
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=7.5e-44 Score=291.49 Aligned_cols=156 Identities=47% Similarity=0.787 Sum_probs=145.3
Q ss_pred EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES 85 (347)
Q Consensus 6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (347)
|.|+|+ .|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||+. ++|.++.+
T Consensus 2 v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~ 64 (159)
T cd01923 2 VRLHTN-----KGDLNLELHCDKAPKACENFIKLCKKG-----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGES 64 (159)
T ss_pred EEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC-----------ccCCcEEEEEeCCcEEEecccC-CCCCCCcc
Confidence 556665 899999999999999999999999987 8999999999999999999986 67889999
Q ss_pred ccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccc
Q 019054 86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD 164 (347)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~ 164 (347)
+||..+++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||++|++|+.++++.+++|..+
T Consensus 65 ~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~ 144 (159)
T cd01923 65 IWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEE 144 (159)
T ss_pred ccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCC
Confidence 99999999954 68899999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eEeccceecCCCCC
Q 019054 165 VTITDCGEIPEGAD 178 (347)
Q Consensus 165 v~I~~~g~~~~~~~ 178 (347)
|+|.+|.++.++++
T Consensus 145 i~I~~~~i~~dpf~ 158 (159)
T cd01923 145 IKIEDTSVFVDPFE 158 (159)
T ss_pred eEEEEeEEEeCCCC
Confidence 99999999876654
No 12
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=9.2e-44 Score=288.81 Aligned_cols=148 Identities=50% Similarity=0.849 Sum_probs=139.5
Q ss_pred EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES 85 (347)
Q Consensus 6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (347)
|.|+++ .|+|+||||++.||+||+||++||+++ ||+|+.||||+|+|+|||||+. ++|+++.+
T Consensus 3 v~l~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~ 65 (153)
T cd01928 3 VTLHTN-----LGDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGES 65 (153)
T ss_pred EEEEEc-----cccEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCc
Confidence 667766 799999999999999999999999987 8999999999999999999986 67888899
Q ss_pred ccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccc
Q 019054 86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD 164 (347)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~ 164 (347)
+||.+|++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|++++++..++|..+
T Consensus 66 ~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~ 145 (153)
T cd01928 66 IWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEE 145 (153)
T ss_pred cCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCC
Confidence 99999999986 67899999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eEeccc
Q 019054 165 VTITDC 170 (347)
Q Consensus 165 v~I~~~ 170 (347)
|+|.++
T Consensus 146 i~I~~~ 151 (153)
T cd01928 146 IRIKDV 151 (153)
T ss_pred eEEEEe
Confidence 999876
No 13
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.5e-43 Score=286.16 Aligned_cols=143 Identities=58% Similarity=0.889 Sum_probs=135.5
Q ss_pred eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (347)
Q Consensus 15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (347)
++.|+|+||||.+.||+||+||++||+++ ||+|+.||||+|||+|||||+. ++|.++.++||..|++|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e 71 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHARNG-----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE 71 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence 34899999999999999999999999987 8999999999999999999986 67889999999999999
Q ss_pred cc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEecc
Q 019054 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169 (347)
Q Consensus 95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~~ 169 (347)
.. .++|.++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|+.++++.+++|..+|+|.+
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 76 7889999999999999999999999999999999999999999999999999999999988899999999875
No 14
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=9.1e-43 Score=287.37 Aligned_cols=153 Identities=40% Similarity=0.663 Sum_probs=140.2
Q ss_pred eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccC------
Q 019054 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYG------ 88 (347)
Q Consensus 15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~------ 88 (347)
|+.|+|+||||.+.||+||+||++||+++ ||+|+.||||+|+|+|||||+. ++|.++.++|+
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~-----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~ 71 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ 71 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHhcC-----------CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence 34799999999999999999999999987 8999999999999999999986 67888887775
Q ss_pred -CCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCC-CCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccce
Q 019054 89 -LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTR-TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV 165 (347)
Q Consensus 89 -~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~-~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v 165 (347)
..|++|.. .++|+++|+|+|++.++++++|||||++.+ .|+||++|+|||+|++||+++++|+.++++.++.|..+|
T Consensus 72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i 151 (166)
T cd01921 72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI 151 (166)
T ss_pred CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence 35777764 788999999999999999999999999985 799999999999999999999999999998889999999
Q ss_pred EeccceecCCCCCC
Q 019054 166 TITDCGEIPEGADD 179 (347)
Q Consensus 166 ~I~~~g~~~~~~~~ 179 (347)
+|.++.++..++++
T Consensus 152 ~I~~~~i~~~pf~~ 165 (166)
T cd01921 152 RIKHTHILDDPFPD 165 (166)
T ss_pred EEEEEEEECCCCCC
Confidence 99999999887765
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=7e-43 Score=281.42 Aligned_cols=141 Identities=57% Similarity=0.885 Sum_probs=132.9
Q ss_pred eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (347)
Q Consensus 15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (347)
++.|+|+||||.+.||+||+||++||+.+ ||+++.||||+|+|+|||||+. ++|.++.++||..|++|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e 71 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKRG-----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE 71 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence 45899999999999999999999999987 8999999999999999999986 67888899999999999
Q ss_pred c-cccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEec
Q 019054 95 N-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168 (347)
Q Consensus 95 ~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~ 168 (347)
. ..++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|+.++++ ++.|..+|+|.
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 4 5789999999999999999999999999999999999999999999999999999999998 68999999885
No 16
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-43 Score=306.49 Aligned_cols=151 Identities=46% Similarity=0.787 Sum_probs=144.4
Q ss_pred eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (347)
Q Consensus 15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (347)
++.|.+-|||+.|.+|++|+||+.||+.+ ||+|+.|||-|.+||||||||+ ++|.||.||||.+|.||
T Consensus 284 Tn~G~lNlELhcd~~P~aceNFI~lc~~g-----------YYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDE 351 (518)
T KOG0883|consen 284 TNHGPLNLELHCDYAPRACENFITLCKNG-----------YYNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDE 351 (518)
T ss_pred ccCCceeeEeecCcchHHHHHHHHHHhcc-----------cccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCccccc
Confidence 34899999999999999999999999988 9999999999999999999998 89999999999999999
Q ss_pred cc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEeccceec
Q 019054 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173 (347)
Q Consensus 95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~~~g~~ 173 (347)
.. .++|+.+|+|||||+|||+|||||||+..++-+||++|++||+|+.|+++|.+|+++++++.++|..+|.|.+..+.
T Consensus 352 f~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VF 431 (518)
T KOG0883|consen 352 FCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVF 431 (518)
T ss_pred cCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEe
Confidence 66 79999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCC
Q 019054 174 PEGA 177 (347)
Q Consensus 174 ~~~~ 177 (347)
-+++
T Consensus 432 VdPf 435 (518)
T KOG0883|consen 432 VDPF 435 (518)
T ss_pred eCcH
Confidence 5543
No 17
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-43 Score=281.35 Aligned_cols=164 Identities=61% Similarity=1.034 Sum_probs=154.8
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEE---EecCceEEeccCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR---VIKGFMIQGGDISA 77 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~r---v~~~~~iq~G~~~~ 77 (347)
|.||.||||++++++++|+++++||.|..|+|++||..||++.++.+ |++..||| .+++||+||||++.
T Consensus 1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~ 72 (167)
T KOG0865|consen 1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTC 72 (167)
T ss_pred CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCcccc
Confidence 78999999999999999999999999999999999999999887665 99999999 34479999999999
Q ss_pred CCCCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCC
Q 019054 78 GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD 157 (347)
Q Consensus 78 ~~~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~ 157 (347)
.+|+|+.||||++|+|||+.++|..+|+|+|||.|||+|+|||||++....|||++|+|||+|.+||+++++++......
T Consensus 73 hngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~ 152 (167)
T KOG0865|consen 73 HNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRN 152 (167)
T ss_pred cCCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999966654
Q ss_pred CCccccceEeccceec
Q 019054 158 NDCPIADVTITDCGEI 173 (347)
Q Consensus 158 ~~~P~~~v~I~~~g~~ 173 (347)
+.|...+.|.+|+.+
T Consensus 153 -gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 153 -GKTSKKITIADCGQL 167 (167)
T ss_pred -CcccccEEEecCCcC
Confidence 889999999999864
No 18
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-42 Score=253.40 Aligned_cols=153 Identities=48% Similarity=0.772 Sum_probs=143.1
Q ss_pred EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES 85 (347)
Q Consensus 6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (347)
|.+++. .|+|.||||.+.+|++|+||+.||... ||+|++|||-+|||++|+||++ .+|.||.|
T Consensus 3 vtlht~-----~gdikiev~~e~tpktce~~l~~~~~~-----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~s 65 (161)
T KOG0884|consen 3 VTLHTD-----VGDIKIEVFCERTPKTCENFLALCASD-----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNS 65 (161)
T ss_pred EEEeec-----cCcEEEEEEecCChhHHHHHHHHhhhh-----------hccceeecCCCCCcEEEeCCCC-CCCCCCcc
Confidence 667766 699999999999999999999999887 9999999999999999999997 78999999
Q ss_pred ccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCC-Ccccc
Q 019054 86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIA 163 (347)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~-~~P~~ 163 (347)
|||.+|+||.. -++|+-+|.|||||.|||+|+||||||.+..|+||-+|+|||+|++|++.+++|+.+++++. .+|..
T Consensus 66 iwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~ 145 (161)
T KOG0884|consen 66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLN 145 (161)
T ss_pred ccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccch
Confidence 99999999977 58999999999999999999999999999999999999999999999999999999999886 89999
Q ss_pred ceEeccceecCC
Q 019054 164 DVTITDCGEIPE 175 (347)
Q Consensus 164 ~v~I~~~g~~~~ 175 (347)
++.|.+...-..
T Consensus 146 ~~~ik~itihan 157 (161)
T KOG0884|consen 146 DVHIKDITIHAN 157 (161)
T ss_pred heeeeeeEEecC
Confidence 999988765433
No 19
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-42 Score=307.21 Aligned_cols=146 Identities=55% Similarity=0.846 Sum_probs=140.0
Q ss_pred eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (347)
Q Consensus 15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (347)
++.|+|.|.||++.||+||+||..-|+.+ ||+|..|||||+|||||+|||. ++|+||.||||..|+||
T Consensus 411 tt~gdi~~kl~p~ecpktvenf~th~rng-----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfede 478 (558)
T KOG0882|consen 411 TTQGDIHIKLYPEECPKTVENFTTHSRNG-----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDE 478 (558)
T ss_pred ecccceEEEecccccchhhhhhhccccCc-----------cccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhh
Confidence 34799999999999999999999999988 9999999999999999999998 89999999999999999
Q ss_pred cc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEecccee
Q 019054 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172 (347)
Q Consensus 95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~~~g~ 172 (347)
.. .|+|++|.+|||||.|||+||||||||+.+.|||||+|+|||+|..||+|+..|+++.++..++|..++.|.+..+
T Consensus 479 fh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 479 FHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred cCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 76 7999999999999999999999999999999999999999999999999999999999999999999999987643
No 20
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.3e-41 Score=278.91 Aligned_cols=158 Identities=40% Similarity=0.710 Sum_probs=145.6
Q ss_pred eEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCC
Q 019054 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE 84 (347)
Q Consensus 5 ~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~ 84 (347)
.|.|+|+ .|+|+||||.+.+|+||+||++||+.+ ||+|+.||||+|+|+|||||+. ++|+++.
T Consensus 7 ~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~-----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~ 69 (171)
T cd01925 7 KVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT-GTGTGGE 69 (171)
T ss_pred EEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC-----------CCCCCEEEEEcCCcEEEccccC-CCCccCc
Confidence 5777776 799999999999999999999999987 8999999999999999999986 6789999
Q ss_pred cccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEe-ChHHHHHHhcccCCCCCccc
Q 019054 85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI 162 (347)
Q Consensus 85 ~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~-g~~vl~~I~~~~~~~~~~P~ 162 (347)
++||..|++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|+. ++.++++|+.+.++.+++|.
T Consensus 70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~ 149 (171)
T cd01925 70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPV 149 (171)
T ss_pred ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcC
Confidence 999999999976 5789999999999999999999999999999999999999999993 56778999999998889999
Q ss_pred cceEeccceecCCCCCC
Q 019054 163 ADVTITDCGEIPEGADD 179 (347)
Q Consensus 163 ~~v~I~~~g~~~~~~~~ 179 (347)
.+++|.+|.++..++++
T Consensus 150 ~~i~I~~~~i~~~pf~~ 166 (171)
T cd01925 150 YPPKITSVEVLENPFDD 166 (171)
T ss_pred CCeEEEEEEEEcCCchh
Confidence 99999999998766655
No 21
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=3.5e-40 Score=276.13 Aligned_cols=152 Identities=32% Similarity=0.507 Sum_probs=133.9
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
++.|.|+|+ .|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||+....+
T Consensus 28 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~~~-- 89 (190)
T PRK10903 28 DPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQ-- 89 (190)
T ss_pred CcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEeCCceEEeCCcCCCCC--
Confidence 567877776 799999999999999999999999987 99999999999999999999864322
Q ss_pred CCcccCCCCCCCccccCCCCccEEEeeeCC-CCCCCceEEEecCCCCCCCC-----CCceeeEEEeChHHHHHHhcccCC
Q 019054 83 GESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTG 156 (347)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~l~~-----~~~vfG~v~~g~~vl~~I~~~~~~ 156 (347)
.+.++.+|.+|.....|+++|+|+|++.+ +|+++|||||++++.++||+ +|+|||+|++||+++++|++++++
T Consensus 90 -~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~ 168 (190)
T PRK10903 90 -QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH 168 (190)
T ss_pred -CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCC
Confidence 23346778888766667889999999976 99999999999999999984 899999999999999999999987
Q ss_pred C----CCccccceEeccceec
Q 019054 157 D----NDCPIADVTITDCGEI 173 (347)
Q Consensus 157 ~----~~~P~~~v~I~~~g~~ 173 (347)
. .+.|..+|.|.+|.++
T Consensus 169 ~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 169 DVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCCcccCCeEEEEEEEe
Confidence 5 4689999999999775
No 22
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=2.6e-39 Score=265.00 Aligned_cols=149 Identities=34% Similarity=0.576 Sum_probs=126.5
Q ss_pred EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES 85 (347)
Q Consensus 6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (347)
|.|+|+ .|+|+|+||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||+..+.+. +
T Consensus 2 v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~ 62 (164)
T PRK10791 2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---K 62 (164)
T ss_pred EEEEEc-----cccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEecCcEEEeCCcCCCCCc---C
Confidence 455555 899999999999999999999999987 999999999999999999997643322 2
Q ss_pred ccCCCCCCCccccCCCCccEEEeeeCC-CCCCCceEEEecCCCCCCC-------C-CCceeeEEEeChHHHHHHhcccCC
Q 019054 86 IYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLD-------G-KHVVFGRVIKGMGVVRSIEHVMTG 156 (347)
Q Consensus 86 ~~~~~~~~e~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~l~-------~-~~~vfG~v~~g~~vl~~I~~~~~~ 156 (347)
.++..|++|.....++++|+||||+.+ |++++|||||++.+.++|| + +|+|||+|++||+++++|+.++++
T Consensus 63 ~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~ 142 (164)
T PRK10791 63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATG 142 (164)
T ss_pred CCCCCcCCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCC
Confidence 346678888544445579999999986 9999999999999988776 3 799999999999999999999997
Q ss_pred CC----CccccceEeccceec
Q 019054 157 DN----DCPIADVTITDCGEI 173 (347)
Q Consensus 157 ~~----~~P~~~v~I~~~g~~ 173 (347)
.+ +.|..+|.|.++.+.
T Consensus 143 ~~~~~~~~P~~~v~I~~~~i~ 163 (164)
T PRK10791 143 RSGMHQDVPKEDVIIESVTVS 163 (164)
T ss_pred CCCccCCCcCCCeEEEEEEEe
Confidence 63 689999999987553
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.6e-38 Score=258.90 Aligned_cols=141 Identities=37% Similarity=0.530 Sum_probs=123.1
Q ss_pred eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCC
Q 019054 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (347)
Q Consensus 15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (347)
++.|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||+....+. ..++.++.+|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e 69 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKG-----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNE 69 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCc
Confidence 34899999999999999999999999987 999999999999999999998743322 2346678888
Q ss_pred ccccCCCCccEEEeeeCC-CCCCCceEEEecCCCCCCCC-----CCceeeEEEeChHHHHHHhcccCCCC----Cccccc
Q 019054 95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIAD 164 (347)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~l~~-----~~~vfG~v~~g~~vl~~I~~~~~~~~----~~P~~~ 164 (347)
.....|+++|+||||+.+ |++++|||||++++.|+||+ +|+|||+|++||++|++|++++++.. ..|..+
T Consensus 70 ~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~ 149 (155)
T cd01920 70 AGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD 149 (155)
T ss_pred ccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCC
Confidence 766667889999999976 89999999999999999995 79999999999999999999999764 578887
Q ss_pred eEecc
Q 019054 165 VTITD 169 (347)
Q Consensus 165 v~I~~ 169 (347)
|.|.+
T Consensus 150 v~i~~ 154 (155)
T cd01920 150 VIIES 154 (155)
T ss_pred eEEEE
Confidence 77754
No 24
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-38 Score=273.38 Aligned_cols=160 Identities=39% Similarity=0.674 Sum_probs=147.3
Q ss_pred eEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCC
Q 019054 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE 84 (347)
Q Consensus 5 ~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~ 84 (347)
.|.+.++ .|+|.||||...||++|.||++||..+ ||+||.|||++|||.+|||||+ ++|+||.
T Consensus 14 kvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg-----------yy~nt~fhrlvp~f~~Qggdp~-~~gtGge 76 (439)
T KOG0885|consen 14 KVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG-----------YYDNTEFHRLVPGFLVQGGDPT-GTGTGGE 76 (439)
T ss_pred eEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc-----------cccCceeeeeccchhcccCCCC-CCCCCcc
Confidence 4666666 799999999999999999999999988 9999999999999999999998 8999999
Q ss_pred cccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEe-ChHHHHHHhcccCCCCCccc
Q 019054 85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI 162 (347)
Q Consensus 85 ~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~-g~~vl~~I~~~~~~~~~~P~ 162 (347)
||||.+|.+|.. .++++++|+|+|||.+.+.||||||+|++++|+|++++++||+|+. .+-.+..|..+.++.+.+|.
T Consensus 77 siyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~ 156 (439)
T KOG0885|consen 77 SIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPV 156 (439)
T ss_pred ccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCC
Confidence 999999999966 7899999999999999999999999999999999999999999994 44567788899999889999
Q ss_pred cceEeccceecCCCCCCCC
Q 019054 163 ADVTITDCGEIPEGADDGI 181 (347)
Q Consensus 163 ~~v~I~~~g~~~~~~~~~~ 181 (347)
.+-.|.++.++..++++..
T Consensus 157 ~p~kI~s~EV~~npFdDI~ 175 (439)
T KOG0885|consen 157 DPPKIKSVEVLINPFDDIK 175 (439)
T ss_pred CccceeeeEeecCchhhcc
Confidence 9999999999988777653
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=2.8e-36 Score=245.21 Aligned_cols=140 Identities=62% Similarity=0.976 Sum_probs=128.5
Q ss_pred eeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCCc
Q 019054 16 LEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDEN 95 (347)
Q Consensus 16 ~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 95 (347)
+.|+|+||||++.+|++|+||++||+++ +|+|+.||||+|+++|||||+....+.+ +.++..+++|.
T Consensus 5 ~~G~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~ 71 (146)
T cd00317 5 TKGRIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN 71 (146)
T ss_pred ccCcEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence 3699999999999999999999999987 8999999999999999999987544332 45678899998
Q ss_pred cccC-CCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEec
Q 019054 96 FELK-HERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168 (347)
Q Consensus 96 ~~~~-~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~ 168 (347)
.... |+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++||+++++|...+++.++.|..+|.|.
T Consensus 72 ~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~ 145 (146)
T cd00317 72 FPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS 145 (146)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence 8665 899999999999999999999999999999999999999999999999999999999889999999985
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1.5e-36 Score=251.31 Aligned_cols=127 Identities=34% Similarity=0.546 Sum_probs=111.5
Q ss_pred eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC-------------
Q 019054 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT------------- 81 (347)
Q Consensus 15 ~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~------------- 81 (347)
++.|+|+||||++.||+||+||++||+.+ ||+++.||||+|+|||||||+... ++
T Consensus 4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRVi~~fviQgGdp~~~-~~~~~~~~~~~~~~~ 71 (176)
T cd01924 4 TDNGTITIVLDGYNAPVTAGNFVDLVERG-----------FYDGMEFHRVEGGFVVQTGDPQGK-NPGFPDPETGKSRTI 71 (176)
T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHhC-----------CcCCCEEEEecCCcEEEecCCCCC-CCCcccccccccccc
Confidence 56899999999999999999999999987 999999999999999999998743 21
Q ss_pred --------CCCcccCCCC-----CCCccccCCCCccEEEeeeCC--CCCCCceEEEecC-------CCCCCCCCCceeeE
Q 019054 82 --------GGESIYGLKF-----EDENFELKHERKGMLSMANAG--PNTNGSQFFITTT-------RTSHLDGKHVVFGR 139 (347)
Q Consensus 82 --------~~~~~~~~~~-----~~e~~~~~~~~~g~~~~~~~~--~~~~~sqF~i~~~-------~~~~l~~~~~vfG~ 139 (347)
++.++|+..+ .+++..+.|+++|+|||++.+ |||++|||||+++ +.|+||++|+|||+
T Consensus 72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~ 151 (176)
T cd01924 72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY 151 (176)
T ss_pred cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence 2335666554 356777889999999999998 6999999999998 78999999999999
Q ss_pred EEeChHHHHHHhcc
Q 019054 140 VIKGMGVVRSIEHV 153 (347)
Q Consensus 140 v~~g~~vl~~I~~~ 153 (347)
|++||++|++|+..
T Consensus 152 VveG~dvl~~I~~g 165 (176)
T cd01924 152 VTDGLDILRELKVG 165 (176)
T ss_pred EecCHHHHHhhcCC
Confidence 99999999999753
No 27
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=1.3e-35 Score=243.81 Aligned_cols=151 Identities=50% Similarity=0.839 Sum_probs=131.6
Q ss_pred EEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCC-Cc
Q 019054 7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG-ES 85 (347)
Q Consensus 7 ~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~-~~ 85 (347)
||+|+.++ .|+|+||||++.||++|+||++||+.+ +|+|+.||||+|+++||||++....+.+. ..
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~ 67 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS 67 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccc
Confidence 78888755 899999999999999999999999977 89999999999999999999875433111 12
Q ss_pred ccCCCCCCCcc-ccCCCCccEEEeeeCC--CCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054 86 IYGLKFEDENF-ELKHERKGMLSMANAG--PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (347)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~--~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~ 162 (347)
..+.++++|.. ...++++|+|+|++.+ +++++|||||++.+.|++|++|+|||+|++||+++++|+..+++. +|.
T Consensus 68 ~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~ 145 (155)
T PF00160_consen 68 TGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPK 145 (155)
T ss_dssp TTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBS
T ss_pred cCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccC
Confidence 33556888884 4444489999999986 899999999999999999999999999999999999999998887 999
Q ss_pred cceEecccee
Q 019054 163 ADVTITDCGE 172 (347)
Q Consensus 163 ~~v~I~~~g~ 172 (347)
.+|.|.+|++
T Consensus 146 ~~v~I~~cgv 155 (155)
T PF00160_consen 146 QDVTISSCGV 155 (155)
T ss_dssp STEEEEEEEE
T ss_pred CCeEEEEeEC
Confidence 9999999985
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-36 Score=257.74 Aligned_cols=158 Identities=38% Similarity=0.653 Sum_probs=147.1
Q ss_pred EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES 85 (347)
Q Consensus 6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (347)
|.++++ +|+|||+||.+.+|.||.||++||+-+ ||++|.||.|..+|.+|.|||+ ++|.||.|
T Consensus 3 VlieTt-----lGDlvIDLf~~erP~~clNFLKLCk~K-----------YYN~clfh~vq~~f~aQTGDPt-GtG~GG~s 65 (479)
T KOG0415|consen 3 VLIETT-----LGDLVIDLFVKERPRTCLNFLKLCKIK-----------YYNFCLFHTVQRDFTAQTGDPT-GTGDGGES 65 (479)
T ss_pred EEEEee-----cccEEeeeecccCcHHHHHHHHHHhHh-----------hcccceeeeccccceeecCCCC-CCCCCcce
Confidence 788887 799999999999999999999999987 9999999999999999999998 69999999
Q ss_pred ccCC-------CCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCC-CCCCCCCCceeeEEEeChHHHHHHhcccCC
Q 019054 86 IYGL-------KFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTR-TSHLDGKHVVFGRVIKGMGVVRSIEHVMTG 156 (347)
Q Consensus 86 ~~~~-------~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~-~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~ 156 (347)
|||. .|+.|.. .++|.+.|+|||++.|.|-+||||||||+. ...|||+|+|||+|.+|++++.+|....++
T Consensus 66 i~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD 145 (479)
T KOG0415|consen 66 IYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVD 145 (479)
T ss_pred eeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcC
Confidence 9864 3666644 799999999999999999999999999997 468999999999999999999999999999
Q ss_pred CCCccccceEeccceecCCCCCCC
Q 019054 157 DNDCPIADVTITDCGEIPEGADDG 180 (347)
Q Consensus 157 ~~~~P~~~v~I~~~g~~~~~~~~~ 180 (347)
....|..+|+|....++..+++++
T Consensus 146 ~~~rPykdIRI~HTiiLdDPFddp 169 (479)
T KOG0415|consen 146 PKNRPYKDIRIKHTIILDDPFDDP 169 (479)
T ss_pred CCCCcccceeeeeeEEecCCCCCc
Confidence 999999999999999998888765
No 29
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=4.6e-22 Score=171.90 Aligned_cols=123 Identities=33% Similarity=0.476 Sum_probs=118.8
Q ss_pred HHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHH
Q 019054 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (347)
Q Consensus 207 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~ 286 (347)
+....|+.++..||.+++.++|.+|+..|.+||. ++|.++..|+|+|.+|.++|.|+.|+.+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~------------------l~P~nAVyycNRAAAy~~Lg~~~~AVkD 137 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE------------------LDPTNAVYYCNRAAAYSKLGEYEDAVKD 137 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------cCCCcchHHHHHHHHHHHhcchHHHHHH
Confidence 4566899999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347 (347)
Q Consensus 287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (347)
|+.||.+||.++++|.|+|.+|..+|+|++|++.|+++|+++|+++.++..|..+++++++
T Consensus 138 ce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 138 CESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999988764
No 30
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.5e-21 Score=170.49 Aligned_cols=143 Identities=31% Similarity=0.430 Sum_probs=129.4
Q ss_pred CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (347)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (347)
+....++.+..|...+..||.+|+.|+|..|+..|++|++++.+....+. ++..........+++|+|.||++++.|
T Consensus 197 ~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~---ee~~~~~~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 197 WKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE---EEQKKAEALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred cccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH---HHHHHHHHHHHHHhhHHHHHHHhhhhH
Confidence 34445568889999999999999999999999999999998876544333 555567778889999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
.+|+..|+++|+++|.|.||+||+|+|+..+++|+.|+.+|+++++++|+|..+..+|..++++++
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998875
No 31
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=2.3e-18 Score=140.29 Aligned_cols=128 Identities=27% Similarity=0.372 Sum_probs=117.1
Q ss_pred hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHH
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~ 284 (347)
.......+..++..||.+|+.|+|.+|...|..||.+.+.+ .......+|.|+|.|.++++.++.||
T Consensus 88 k~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-------------~~e~rsIly~Nraaa~iKl~k~e~aI 154 (271)
T KOG4234|consen 88 KDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-------------STEERSILYSNRAAALIKLRKWESAI 154 (271)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-------------cHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 33456678999999999999999999999999999976655 55677889999999999999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 285 ~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
.+|.+||++.|.+.+|+.|||.+|..+..|++|+.+|++.++++|...+++..+.++...+
T Consensus 155 ~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 155 EDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 9999999999999999999999999999999999999999999999999999888876554
No 32
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.7e-17 Score=137.16 Aligned_cols=145 Identities=28% Similarity=0.285 Sum_probs=131.7
Q ss_pred CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (347)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (347)
|..+-.+.+.....+...||.+|+.|+|.+|...|..|+..+..+...+.+.+.+|..++.....++.|.++|++..++|
T Consensus 167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY 246 (329)
T ss_pred ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence 33445566777888999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh
Q 019054 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKV 345 (347)
Q Consensus 281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~~~~ 345 (347)
-+++++|+.+|..+|.|.||||++|.++....+.++|.++|+++++++|.- +.+..+|..++.++
T Consensus 247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~ 312 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRM 312 (329)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 45667777776554
No 33
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.6e-16 Score=146.69 Aligned_cols=117 Identities=28% Similarity=0.507 Sum_probs=112.3
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
+.+...+..|+.+|+.|+|..|+.+|++||. .+|.++.+|.|+|.||.+++.+..|+.+|++
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIK------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHh------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3477789999999999999999999999999 8899999999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+++++|++.++|+|.|.++..+.+|+.|++.|+++++++|++.++...+.++...
T Consensus 418 ~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 418 CIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988765
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=1.8e-15 Score=122.30 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=109.2
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+...|..++..|+|++|+..|.+++. .+|....++.++|.++..+|++++|+..|++++++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVM------------------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 466789999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|+++.+++++|.++..+|++++|+..|+++++++|+++.....++.++..++
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888876653
No 35
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.64 E-value=1.6e-15 Score=140.85 Aligned_cols=116 Identities=23% Similarity=0.437 Sum_probs=110.9
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..++..|+.+|..|+|.+|+.+|.+||+ +.|....+|+++|.||+++|++++|+.++++|+.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~------------------~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAID------------------LDPNNAELYADRAQANIKLGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4577889999999999999999999999 8889999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++|+++.+|+++|.+|..+|+|++|+..|+++++++|+++.+...+..++.+++
T Consensus 65 l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 65 LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987763
No 36
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.64 E-value=4.7e-16 Score=136.49 Aligned_cols=121 Identities=27% Similarity=0.254 Sum_probs=114.0
Q ss_pred hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHH
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~ 284 (347)
...+++.+..+++.||.||++|.|++||.+|.+++. ..|.++..+.|+|.+|++++.|..|.
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia------------------~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA------------------VYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc------------------cCCCCccchhhHHHHHHHHHHHHHHH
Confidence 455677888899999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 285 ~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
.+|+.|+.++....+||.|||.+...+|...+|.++++.+|+|.|.+.++++.++.+..
T Consensus 152 ~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 152 EDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998888776654
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=4.5e-15 Score=135.63 Aligned_cols=122 Identities=24% Similarity=0.315 Sum_probs=105.0
Q ss_pred chhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHH
Q 019054 203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG 282 (347)
Q Consensus 203 ~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~ 282 (347)
...+...+.|.+++..||-+|+.|.|++||.+|++||. +.|.-+..|.|++.||..+|+|++
T Consensus 106 ~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~------------------l~p~epiFYsNraAcY~~lgd~~~ 167 (606)
T KOG0547|consen 106 MLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE------------------LCPDEPIFYSNRAACYESLGDWEK 167 (606)
T ss_pred cChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh------------------cCCCCchhhhhHHHHHHHHhhHHH
Confidence 44566678899999999999999999999999999999 777778999999999999999999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Q 019054 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP-NDGGIKKELAVAK 342 (347)
Q Consensus 283 A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P-~~~~~~~~l~~~~ 342 (347)
.+++|++||+++|+.+||++||+.++..+|++.+|+.+..-..-+.. +|..+.-.+.++.
T Consensus 168 Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~L 228 (606)
T KOG0547|consen 168 VIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVL 228 (606)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999865444332 3444444444443
No 38
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.54 E-value=1.3e-13 Score=110.26 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=98.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
....++..|..++..|++++|...|+-... .+|.+...|+|+|.|+..+|+|++|+..|.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456788999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
+.++|+++.++++.|.|++.+|+.+.|.+.|+.++.+.-.+++
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 9999999999999999999999999999999999999844333
No 39
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.7e-14 Score=132.15 Aligned_cols=113 Identities=28% Similarity=0.420 Sum_probs=109.1
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..++..||.+|..|+|+.|+.+|+.||. ++|.+..+|.|+..||.++++|++|+.+..+.+
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~ 63 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTR 63 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence 45678999999999999999999999999 889999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+++|+.+++|.|+|.++..+|+|++|+..|.+.|+.+|+|+.+...|..+.
T Consensus 64 ~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 64 RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999999999999998876
No 40
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=1.7e-13 Score=109.53 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=108.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+.....+|..++..|++++|+..|++++. ..|....++.++|.++.+++++++|+..++++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA------------------YDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999998 78889999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+.++|+++..++.+|.+|..+|++++|+..|+++++++|++.........+.+.+
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999777777766654
No 41
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.4e-14 Score=125.14 Aligned_cols=128 Identities=28% Similarity=0.435 Sum_probs=110.7
Q ss_pred hhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (347)
Q Consensus 204 ~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (347)
......+....++..||.+|+.|+|..|.+.|+.||.+-+. ....++.+|.|+|.+..++|+..+|
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------------n~~~naklY~nra~v~~rLgrl~ea 306 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------------NKKTNAKLYGNRALVNIRLGRLREA 306 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--------------ccchhHHHHHHhHhhhcccCCchhh
Confidence 34445666778899999999999999999999999992211 3345678899999999999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 284 LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 284 ~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+.+|+.|+.++|...+++.++|.|+..+++|++|+++|++|+++.-+ .+++..+.+++..++
T Consensus 307 isdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 307 ISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred hhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865 777777777765554
No 42
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.45 E-value=7.7e-14 Score=130.90 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=83.2
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
...|..+-++|.+|+.+|+.+-||..|++||+ ++|....+|+|+|.+....|+..+|+.+|.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~------------------~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE------------------LQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHh------------------cCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 33455556666777777777777777777776 667777777777777777777777777777
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+||.+.|..+.+++++|.+|..+|.+++|...|+++++..|.-..+.++|+.+.+..
T Consensus 345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777776665543
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.44 E-value=3.5e-13 Score=126.56 Aligned_cols=199 Identities=21% Similarity=0.255 Sum_probs=125.8
Q ss_pred CCCCCCCceeeEEEeChHHH-HHHhcccCCCCCccccceEeccceecCCC---CCCCCCCcCCCCCCCCCCCCCCCC---
Q 019054 128 SHLDGKHVVFGRVIKGMGVV-RSIEHVMTGDNDCPIADVTITDCGEIPEG---ADDGISNFFNDGDSYPDWPADLDQ--- 200 (347)
Q Consensus 128 ~~l~~~~~vfG~v~~g~~vl-~~I~~~~~~~~~~P~~~v~I~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (347)
|++-.-|.-+|.|.+.+.+. +++.........+|...+...+.+++--. .+-++..+....+.-|.+|+.-..
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 33334467777777655432 34444333344567777777666655321 111122222233333444432211
Q ss_pred --------------CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHH
Q 019054 201 --------------TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI 266 (347)
Q Consensus 201 --------------~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (347)
+.+.+..-..-|+++.++||++.+.|.+++|...|.+|++ ..|..+.+
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~------------------v~p~~aaa 390 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE------------------VFPEFAAA 390 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh------------------hChhhhhh
Confidence 1111222233466778888888888888888888888888 66777777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+.|+|.+|.++|++++|+.+|++||+++|..+.+|.++|..|..+|+..+|+++|.+|+.++|.-.++..+|+.+.+.
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777776654
No 44
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6.8e-13 Score=116.32 Aligned_cols=104 Identities=28% Similarity=0.441 Sum_probs=94.8
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.|..++..||.+|+.++|..|+..|+++|+ ........++.+|.|+|.|.+.+|+|..|+.+|++|
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--------------~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK--------------KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--------------hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999998 223345678899999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
+.++|++.||++|-|.|++.+.++++|..+++..++++
T Consensus 146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999888888887776664
No 45
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.41 E-value=1.9e-12 Score=129.47 Aligned_cols=112 Identities=24% Similarity=0.330 Sum_probs=100.5
Q ss_pred cchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH
Q 019054 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (347)
Q Consensus 202 ~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~ 281 (347)
..+.+.....+..++..|+.+|+.|+|++|+..|+++|+ ..|. ...|.|+|.||.++|+|+
T Consensus 117 ~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~------------------~~p~-~~~~~n~a~~~~~l~~~~ 177 (615)
T TIGR00990 117 NLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE------------------CKPD-PVYYSNRAACHNALGDWE 177 (615)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCc-hHHHHHHHHHHHHhCCHH
Confidence 334455566788999999999999999999999999999 5554 568999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 332 (347)
+|+.+|++||+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus 178 ~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 178 KVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999998888876543
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.41 E-value=2.1e-12 Score=110.03 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=104.9
Q ss_pred hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHH-HHcCC--hH
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK-LKLGD--LK 281 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~l~~--~~ 281 (347)
+...++.+..+..+|..+...|++++|+..|+++++ +.|.+..++.++|.++ ...|+ ++
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~------------------l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ------------------LRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 334455678899999999999999999999999999 8999999999999985 67787 59
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
+|+..++++++++|++..+++.+|.++..+|+|++|+..|+++++++|.+..-...+..
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~ 186 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES 186 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999976654444433
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=2.2e-12 Score=117.07 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=101.2
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+...|..+...|++++|+..|+++++ .+|..+.+|+++|.++..+|++++|+..++++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALA------------------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 467789999999999999999999999999 88999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
++++|++..+++++|.++...|++++|+++|+++++++|+++.
T Consensus 125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 125 LELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999874
No 48
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.2e-12 Score=108.35 Aligned_cols=115 Identities=27% Similarity=0.352 Sum_probs=105.4
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..++..||.+|..++|..|+..|.+||. ..|..+..|.|+|.||+++++|+.+..+|.+|
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~------------------~nP~~~~Y~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAIC------------------INPTVASYYTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHh------------------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence 578899999999999999999999999999 89999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PNDGGIKKELAVAKK 343 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~-----P~~~~~~~~l~~~~~ 343 (347)
++++|+.++++|-+|.+......|++|+..+++|..+. |.-.++...|..+++
T Consensus 71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~ 128 (284)
T KOG4642|consen 71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK 128 (284)
T ss_pred HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence 99999999999999999999999999999999996663 234467777777654
No 49
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.38 E-value=3.4e-13 Score=124.01 Aligned_cols=118 Identities=31% Similarity=0.421 Sum_probs=113.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.|..+++.++.+++.+.|+.|+..|.|||+ ++|+.+..+-|++.++.+.++|..|+.++.+|
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~------------------ldpnca~~~anRa~a~lK~e~~~~Al~Da~ka 64 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIE------------------LDPNCAIYFANRALAHLKVESFGGALHDALKA 64 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHh------------------cCCcceeeechhhhhheeechhhhHHHHHHhh
Confidence 467789999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++++|...++|+++|.+.+.++++.+|+.+|++...+.|+++.+...+.++++.+.
T Consensus 65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987764
No 50
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.36 E-value=2.2e-12 Score=90.43 Aligned_cols=67 Identities=36% Similarity=0.527 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEP 329 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P 329 (347)
.+..|.++|.+++.+++|++|+.+|+++++++|+++.+++++|.+|..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35689999999999999999999999999999999999999999999999 79999999999999998
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.33 E-value=1.2e-11 Score=123.75 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=77.4
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..++..|++++|+..|++++. .+|....+|.++|.++..+|++++|+.++++
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~------------------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 390 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIE------------------LDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3456678889999999999999999999998 4555555566666666666666666666666
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
+++++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.+..
T Consensus 391 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666655555555544443
No 52
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.30 E-value=2.4e-11 Score=94.38 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=97.0
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHh---hHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK---TKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
++.++..|..+++.|+|++|+..|.+++. ..| ....+++.+|.++.+.+++++|+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 63 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLK------------------KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFL 63 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCccccHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 35678899999999999999999999998 333 235788999999999999999999999
Q ss_pred HHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 289 FAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 289 ~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
+++..+|++ ..+++.+|.++..++++++|+..++++++..|++..+...+
T Consensus 64 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 64 AVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 999999885 67899999999999999999999999999999988766554
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.25 E-value=9.2e-11 Score=94.80 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhc
Q 019054 232 LRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311 (347)
Q Consensus 232 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 311 (347)
...|+++++ .+|.. +.++|.++..+|++++|+..|++++.++|.+..+|+.+|.++..+
T Consensus 13 ~~~~~~al~------------------~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 71 (144)
T PRK15359 13 EDILKQLLS------------------VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML 71 (144)
T ss_pred HHHHHHHHH------------------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 356778887 66664 667999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347 (347)
Q Consensus 312 ~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (347)
|++++|+..|+++++++|+++.++..++.+...+++
T Consensus 72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998776653
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=8.1e-12 Score=118.55 Aligned_cols=135 Identities=19% Similarity=0.191 Sum_probs=99.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhh------hccccCCCChhh----------hhhHHhhHHHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD------ICWEKEGIDEGK----------SSSLRKTKSQIFTNSSACK 274 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~------~~~~~~~~~~~~----------~~~~~~~~~~~~~nla~~~ 274 (347)
.++.|...||.+--+++++.|+..|++|+.+=+ ++...+....++ ....++....+|+.+|.+|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 467889999999999999999999999998443 011111111111 1234666777888888888
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+++++++.|.-++++|++++|.+.-.+...|.++.++|+.++|+..|++|+.++|.|+-.+...+.+...+
T Consensus 500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888877777666665443
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=5.4e-11 Score=105.01 Aligned_cols=113 Identities=22% Similarity=0.319 Sum_probs=104.2
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+.++|+.++.+|+|..|+.+|..|++ .+|.+..+++.+|.+|+.+|+-.-|+.+++++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------------------CCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 567789999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVA 341 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~l~~~ 341 (347)
|++.|+..-|-..||.+++.+|++++|..+|...++.+|++. ++...|..+
T Consensus 99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI 152 (504)
T ss_pred HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence 999999999999999999999999999999999999999644 444444443
No 56
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.23 E-value=7.3e-11 Score=117.54 Aligned_cols=118 Identities=9% Similarity=0.066 Sum_probs=112.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|.+....|+|++|..+++.++. +.|....++.+++.++.+++++++|+..++++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 467889999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+..+|+++.+++.+|.++.++|+|++|++.|++++..+|+++.++..++.+.+..+
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G 202 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRG 202 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999998887665
No 57
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=2e-10 Score=95.88 Aligned_cols=109 Identities=22% Similarity=0.204 Sum_probs=95.4
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
...+..+...|..+...|+|++|+.+|+++++..+ ..+....++.++|.++.++|++++|+..++
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---------------DPNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---------------ccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34677889999999999999999999999998211 111235789999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhhCCCCH
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALND--------------VDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~--------------~~~A~~~~~~al~l~P~~~ 332 (347)
+++.+.|.+..++..+|.++..+++ +++|++.++++++++|++-
T Consensus 97 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 97 QALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 9999999999999999999999988 6889999999999999874
No 58
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.1e-10 Score=106.80 Aligned_cols=114 Identities=22% Similarity=0.253 Sum_probs=106.1
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
.-.||-|.-+++-++|+.+|++||+ ++|....+|.-+|.-|+.+++-..|+..|++|++++|
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALk------------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALK------------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHh------------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 3468888889999999999999999 9999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347 (347)
Q Consensus 296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (347)
.+.+|||-+|++|..++=..=|+-.|++|+++-|+|+.++..|+.|..++.+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999877653
No 59
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.21 E-value=2.7e-11 Score=84.90 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=64.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEF 289 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~ 289 (347)
.|..+...|..++..|+|++|+..|+++++ .+|..+.+++++|.||.++| ++.+|+.++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~------------------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE------------------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH------------------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 577899999999999999999999999999 89999999999999999999 79999999999
Q ss_pred HhhcCC
Q 019054 290 AMRDGD 295 (347)
Q Consensus 290 al~~~p 295 (347)
|++++|
T Consensus 64 al~l~P 69 (69)
T PF13414_consen 64 ALKLDP 69 (69)
T ss_dssp HHHHST
T ss_pred HHHcCc
Confidence 999998
No 60
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.20 E-value=6.6e-11 Score=86.40 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHH
Q 019054 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (347)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~ 302 (347)
.|+|+.|+..|+++++ ..|. ....++++|.||+++|+|++|+..+++ +..++.+..+++
T Consensus 2 ~~~y~~Ai~~~~k~~~------------------~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE------------------LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHH------------------HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHH------------------HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 5899999999999999 5552 567788899999999999999999999 889999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 019054 303 RQGQAYMALNDVDAAVESFEKA 324 (347)
Q Consensus 303 ~~g~~~~~~~~~~~A~~~~~~a 324 (347)
.+|.++..+|+|++|+..|++|
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999875
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.6e-10 Score=108.01 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=107.2
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..++++|...|..+.|.+|+.+|++++..++.... ..+.....+.|+|.++.+++++++||..+++|
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-----------e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-----------EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-----------cccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 3456789999999999999999999999965543311 11146678999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
|.+.|.++.++..+|.+|..+|+++.|++.|.+|+-++|+|.-+...|..+-..
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998888887766543
No 62
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.19 E-value=9.7e-11 Score=81.01 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 268 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 332 (347)
+.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999875
No 63
>PRK15331 chaperone protein SicA; Provisional
Probab=99.19 E-value=2e-10 Score=92.50 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=102.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
....++..|-.+|..|+|++|...|+-... .++.+...++.+|.|+..+++|++|+..|..|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------------------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------------------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889999999999999999998877 78888999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
..++++++...|..|.||..+|+.++|..+|+.+++ .|.+..++..-......
T Consensus 98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~ 150 (165)
T PRK15331 98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEA 150 (165)
T ss_pred HHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 67887776655544443
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.19 E-value=1.3e-10 Score=120.01 Aligned_cols=113 Identities=14% Similarity=0.050 Sum_probs=82.5
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+..+|..+.+.|++++|+..|+++++ .+|....++.++|.++..+|++++|+..+++|+
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~------------------l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALE------------------LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456666677777777777777777777 677777777777777777777777777777777
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+++|+++.+++++|.++..+|++++|+..|+++++++|++..+......+.
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 777777777777777777777777777777777777777766665555444
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=1.7e-10 Score=113.74 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=60.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~ 303 (347)
..+++++|+..+++|++ ++|.+..++..+|.++..+|++++|+..+++|++++|+++.+++.
T Consensus 316 ~~~~~~~A~~~~~~Al~------------------ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~ 377 (553)
T PRK12370 316 KQNAMIKAKEHAIKATE------------------LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYY 377 (553)
T ss_pred cchHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45566666666666666 566666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
+|.++..+|++++|+..|+++++++|.+...
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 6666666666666666666666666665443
No 66
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.17 E-value=4.9e-10 Score=95.44 Aligned_cols=105 Identities=18% Similarity=0.138 Sum_probs=96.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~ 303 (347)
..++.++++..++++++ .+|.+..+|.++|.+|+.+|++++|+..+++|++++|+++.++..
T Consensus 51 ~~~~~~~~i~~l~~~L~------------------~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~ 112 (198)
T PRK10370 51 SQQTPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAA 112 (198)
T ss_pred CchhHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46778899999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 304 QGQAY-MALND--VDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 304 ~g~~~-~~~~~--~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|.++ ...|+ +++|.+.++++++++|++..++..++.+....+
T Consensus 113 lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g 158 (198)
T PRK10370 113 LATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQA 158 (198)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Confidence 99985 67787 599999999999999999999999987765543
No 67
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=1.5e-10 Score=84.62 Aligned_cols=98 Identities=41% Similarity=0.571 Sum_probs=90.7
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+..+|..++..|++++|+..++++++ ..+....++..+|.++...+++++|+..+++++.+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE------------------LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56788888999999999999999998 555566889999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
|.+..+++.+|.++...|++++|...+.++++++|.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999998874
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=2.4e-10 Score=112.74 Aligned_cols=101 Identities=11% Similarity=-0.009 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 307 (347)
+++|+..|++|++ ++|..+.+++++|.++..+|++++|+..++++++++|.++.+++.++.+
T Consensus 354 ~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 354 YIVGSLLFKQANL------------------LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred HHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 5668888888888 8999999999999999999999999999999999999999888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhc
Q 019054 308 YMALNDVDAAVESFEKALKLE-PNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 308 ~~~~~~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~ 346 (347)
++..|++++|+..++++++.+ |+++.+...++.+...++
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 888999999999999999885 778888888888776554
No 69
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=1.1e-10 Score=110.92 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=137.9
Q ss_pred CccccceEeccceecCCCCCCCCCCcCCCCCCCCCCC-----------------CCCCCCcchhHHHHhhHHHHHHcCcc
Q 019054 159 DCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWP-----------------ADLDQTPNELSWWMNAVDSIKVFGNE 221 (347)
Q Consensus 159 ~~P~~~v~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~a~~~~~~g~~ 221 (347)
..|.....+.+|..+....+.++..|..+..+-+.+. .....+-..+.-..+.-.+++-+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 6788888888888776655554444433333222211 00000111111123345678999999
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHH
Q 019054 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301 (347)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~ 301 (347)
|.++++|+.|.-+|++|+. .+|.+..+.+-+|..+.++|+.++|+..+++|+.++|.++-+.
T Consensus 499 y~Kqek~e~Ae~~fqkA~~------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVE------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred eeccchhhHHHHHHHhhhc------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 9999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347 (347)
Q Consensus 302 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (347)
|.+|.++..+++|++|+..+++.-++.|++..+...++++.+++++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999887753
No 70
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.4e-10 Score=103.56 Aligned_cols=120 Identities=16% Similarity=0.228 Sum_probs=112.9
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
++...++--+|-.+...++...|++.|++|++ ..|.+..+|+.+|++|.-++.+.-|+-+++
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd------------------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD------------------INPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh------------------cCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 44566778899999999999999999999999 999999999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|+.+.|.+...|-.+|.||.++++.++|+++|.+|+.+.-.+..+...|+.+.++++
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888899999999887764
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=1.7e-10 Score=96.93 Aligned_cols=115 Identities=25% Similarity=0.210 Sum_probs=77.4
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
..++..++..|.+.|+.+.|-+.|++|+. +.|.+..+++|.|.-+..+|+|++|...|++|+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls------------------l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al 130 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALS------------------LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL 130 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHh------------------cCCCccchhhhhhHHHHhCCChHHHHHHHHHHH
Confidence 33444444444444444444444444444 666666677777776667777777777777766
Q ss_pred hc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 292 RD--GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 292 ~~--~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
.. .+..+..+-++|.|.++.|+++.|..+|+++++++|+.+....++...+.+
T Consensus 131 ~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 131 ADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred hCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 43 244467788888888888888888888888888888888888777776544
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.5e-10 Score=108.43 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=105.6
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
++...-+|..|+-.|+|+.|+.+|+.||. ..|.+..+|+.+|..+..-.+..+||..|++||
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~------------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQ------------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHh------------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 44566789999999999999999999999 999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHhc
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----------DGGIKKELAVAKKKVS 346 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~----------~~~~~~~l~~~~~~~~ 346 (347)
++.|....+.|++|.+++.+|.|++|+..|-.||.+.+. +..++..|+.+...++
T Consensus 492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999875 1347777776655443
No 73
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.13 E-value=9.9e-10 Score=91.25 Aligned_cols=108 Identities=20% Similarity=0.127 Sum_probs=90.6
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+...|..++..|+|++|+..|.+++.+.+ .......++.++|.++..+|++++|+..+++
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---------------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---------------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---------------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3678889999999999999999999999998311 1112456899999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhhCCCCH
Q 019054 290 AMRDGDDNVKALFRQGQAYM-------ALNDVD-------AAVESFEKALKLEPNDG 332 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~-------~~~~~~-------~A~~~~~~al~l~P~~~ 332 (347)
|+.++|.+..++..+|.++. .+|+++ +|+..|++++.++|.+.
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999988 777877 56666667888888644
No 74
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.13 E-value=4.9e-10 Score=115.86 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=95.2
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~ 303 (347)
..|++++|+..|+++++ ..|. ..++.++|.++.++|++++|+..+++++.++|+++.++..
T Consensus 588 ~~Gr~~eAl~~~~~AL~------------------l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 588 IPGQPELALNDLTRSLN------------------IAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred hCCCHHHHHHHHHHHHH------------------hCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34777777777777777 7775 8899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|.++..+|++++|+..|+++++++|+++.++..++.+...++
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999998877654
No 75
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.11 E-value=5.4e-11 Score=105.07 Aligned_cols=151 Identities=22% Similarity=0.275 Sum_probs=123.9
Q ss_pred CccccceEeccceecCCCCCCCCCCcCCCCCCCCCCCCCCCCCcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHH
Q 019054 159 DCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA 238 (347)
Q Consensus 159 ~~P~~~v~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~a 238 (347)
..|..+..|...+++..+.+.+.. .++ ......++.++.|...+..+..++..|.++.|+++|..+
T Consensus 75 s~~~~~~~~d~egviepd~d~pq~----MGd----------s~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~a 140 (377)
T KOG1308|consen 75 SSPESDLEIDGEGVIEPDTDAPQE----MGD----------SNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSA 140 (377)
T ss_pred CCCCcchhccCCCccccCCCcchh----hch----------hhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccc
Confidence 445556667777776433322211 111 134567778889999999999999999999999999999
Q ss_pred HHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 019054 239 LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV 318 (347)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~ 318 (347)
|. +.|....+|.+++.++++++++..|+.+|..|++++|+.++-|-.+|.+...+|+|++|.
T Consensus 141 i~------------------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 141 IE------------------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cc------------------cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 99 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 319 ESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 319 ~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
.++..+++++ -++.+-..|.++.
T Consensus 203 ~dl~~a~kld-~dE~~~a~lKeV~ 225 (377)
T KOG1308|consen 203 HDLALACKLD-YDEANSATLKEVF 225 (377)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHhc
Confidence 9999999997 3555555554443
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.8e-10 Score=104.73 Aligned_cols=114 Identities=19% Similarity=0.273 Sum_probs=93.8
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.|.++.-.|..+|-.|++-.|...+.++|. +++....+|..+|.+|+...+.++-..++++|
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~------------------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A 386 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIK------------------LDPAFNSLYIKRAAAYADENQSEKMWKDFNKA 386 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHh------------------cCcccchHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 478889999999999999999999999999 66777777888888888888888888888888
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
..++|.|+..||.||+.++-+++|++|+.+|++|+.|+|.+.-....++-+.
T Consensus 387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL 438 (606)
T ss_pred HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 8888888888888888888888888888888888888887776665555444
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.10 E-value=1.2e-09 Score=94.17 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=64.8
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-----------ccCCCCh-----hhhhhHHhhHHHHHHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGIDE-----GKSSSLRKTKSQIFTNSSACKL 275 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~nla~~~~ 275 (347)
+..+..+|..++..|+|++|+..++++++..+... .....+. .......|....++.++|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45556666666666677777777766666211000 0000000 0000023333444555555555
Q ss_pred HcCChHHHHHHHHHHhhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 276 KLGDLKGALLDTEFAMRDG--DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 276 ~l~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
.+|++++|+..+.+++... +.....++.+|.++...|++++|...|.++++.+|.+......++.+..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY 180 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence 5555555555555555432 2334455555555555566666666666666666655555555554443
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.10 E-value=1.3e-09 Score=94.10 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
+.....+.++|.++..+|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++++.|.+......+..
T Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 211 (234)
T TIGR02521 132 PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIR 211 (234)
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999998888887776666
Q ss_pred HHHHh
Q 019054 341 AKKKV 345 (347)
Q Consensus 341 ~~~~~ 345 (347)
+....
T Consensus 212 ~~~~~ 216 (234)
T TIGR02521 212 IARAL 216 (234)
T ss_pred HHHHH
Confidence 65543
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=2.6e-09 Score=97.01 Aligned_cols=108 Identities=19% Similarity=0.105 Sum_probs=94.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~ 303 (347)
..++.+.++..+.++|...+ ...+..+..|+++|.+|..+|++++|+..++++++++|+++.+|+.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~--------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~ 103 (296)
T PRK11189 38 PTLQQEVILARLNQILASRD--------------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNY 103 (296)
T ss_pred CchHHHHHHHHHHHHHcccc--------------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34578889999999886211 0234557889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+|.++..+|++++|+..|+++++++|++..++..++.+....
T Consensus 104 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 104 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999998888776543
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=1.1e-09 Score=95.95 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=97.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+...|..++..|+|++|+..|++++...+ ..+....+++.+|.++.+++++++|+..++++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP---------------FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 466789999999999999999999999998221 12234468899999999999999999999999
Q ss_pred hhcCCCChh---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 291 MRDGDDNVK---ALFRQGQAYMAL--------NDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 291 l~~~p~~~~---a~~~~g~~~~~~--------~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
++.+|+++. +++.+|.++... +++++|++.|+++++.+|.+......+
T Consensus 97 l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 97 IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 999998876 799999999987 889999999999999999987655443
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=3.9e-10 Score=99.69 Aligned_cols=121 Identities=18% Similarity=0.201 Sum_probs=100.0
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
.......+......++|.++++.+++.++.-++ ..+.....+..++.|+.+-+++.+||..|.++|
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~--------------~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE--------------ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc--------------ccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 333444555666788888999999888881110 112233455668999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
.++|+++.++..||.+|+.-..|+.|+.+|++|.+++|+|..++..+..+++..+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkk 389 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKK 389 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887653
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.06 E-value=1.7e-09 Score=86.20 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=82.8
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
..|....+...+|.++...|++++|+..+++++.++|.+..+++++|.++..+|++++|+..|+++++++|.+......+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 78888899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
+.+....+
T Consensus 92 a~~~~~~g 99 (135)
T TIGR02552 92 AECLLALG 99 (135)
T ss_pred HHHHHHcC
Confidence 88766543
No 83
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.06 E-value=1.6e-09 Score=92.89 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=107.3
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+...|...+..|+|..|+..+.++.+ ..|.+..+|.-+|.+|.++|++++|...|.+|+++
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAAR------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhc------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 455589999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
.|.++.++.++|..|.-.|+++.|...+..+...-+.+..+..+|..+....
T Consensus 164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998888999999998876554
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=2.1e-09 Score=90.41 Aligned_cols=113 Identities=20% Similarity=0.150 Sum_probs=102.3
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+.+...+|..|+..|++..|...+++||+ .+|....+|.-+|..|.++|+.+.|-+.|++|
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~------------------~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA 95 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALE------------------HDPSYYLAHLVRAHYYQKLGENDLADESYRKA 95 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 567788999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKELAVAK 342 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~---~~~~~~~l~~~~ 342 (347)
+.++|++...+.+.|.-++.+|+|++|...|++|+.. |. -.....++..|-
T Consensus 96 lsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 96 LSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCA 149 (250)
T ss_pred HhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHH
Confidence 9999999999999999999999999999999999974 53 334555555543
No 85
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.04 E-value=1.4e-09 Score=109.16 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=72.9
Q ss_pred HHHHHcCccccchhhHHH----HHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 213 DSIKVFGNEHYKKQDYKM----ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
..+..+|..++..|++++ |+..|+++++ ..|....++.++|.++.++|++++|+..++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ------------------FNSDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334455556666666654 5666666665 566666777777777777777777777777
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
+++.++|+++.+++.+|.+|..+|++++|+..|+++++.+|.+......++.
T Consensus 309 ~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 309 QSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 7777777777777777777777777777777777777777766554443333
No 86
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.04 E-value=1.7e-09 Score=108.69 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=99.8
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHH----HHHHHHHHhhc
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG----ALLDTEFAMRD 293 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~----A~~~~~~al~~ 293 (347)
.|..+...|++++|+..|.++++ ..|....++.++|.++..+|++++ |+..|++++++
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~------------------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALA------------------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 35566777888888888888887 778888999999999999999996 89999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|++..++..+|.++..+|++++|+..++++++++|+++.+...++.+....+
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG 332 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999998888765544
No 87
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.02 E-value=1.3e-09 Score=98.33 Aligned_cols=118 Identities=25% Similarity=0.232 Sum_probs=102.0
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+...|..+.+.|++++|++.|+++++ ..|.+..+...++.++...|+++++...+...
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALE------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 345678899999999999999999999999 99999999999999999999999999999888
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
....|+++..+..+|.+|..+|++++|+..|+++++.+|+|+.+...++.+....+
T Consensus 207 ~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 207 LKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred HHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccc
Confidence 88888999999999999999999999999999999999999999999988876544
No 88
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.01 E-value=4.8e-09 Score=92.92 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=94.7
Q ss_pred HHHHHcCccc-cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH---HHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 213 DSIKVFGNEH-YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 213 ~~~~~~g~~~-~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
...+..|..+ ++.|+|++|+..|++.++ ..|.. ..+++.+|.+|+..|++++|+..|.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~------------------~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK------------------KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555555 567999999999999999 44433 5789999999999999999999999
Q ss_pred HHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 289 FAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 289 ~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
+++...|++ +.+++.+|.++..+|++++|...|+++++..|+...+......+
T Consensus 205 ~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 205 SVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 999998875 78999999999999999999999999999999988766655544
No 89
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.01 E-value=1.8e-09 Score=76.33 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=66.1
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 271 a~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
..+|++.++|++|+..+++++.++|+++.+++.+|.++..+|+|++|+++|+++++++|+++.+......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 56789999999999999999999999999999999999999999999999999999999998887766543
No 90
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.01 E-value=3.8e-09 Score=80.93 Aligned_cols=103 Identities=25% Similarity=0.292 Sum_probs=92.7
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
++....+-..|..+-..|+.+.|++.|.++|. +-|..+.+|+|+|+++.-+|+.++|+++++
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~------------------l~P~raSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALC------------------LAPERASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------------------hcccchHhhccHHHHHHHcCChHHHHHHHH
Confidence 44556677788888999999999999999999 888999999999999999999999999999
Q ss_pred HHhhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 289 FAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 289 ~al~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
+|+++.-+. -.++..+|.+|..+|+-+.|..+|+.|-++-.
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 999997554 46899999999999999999999999988853
No 91
>PLN02789 farnesyltranstransferase
Probab=99.00 E-value=5.2e-09 Score=95.48 Aligned_cols=117 Identities=12% Similarity=-0.035 Sum_probs=100.3
Q ss_pred HhhHHHHHHcCccccchh-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh--HHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL--KGALL 285 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~--~~A~~ 285 (347)
++....+...|..+...+ ++++|+..+.+++. .+|.+..+|.+++.++.++++. ++++.
T Consensus 68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~------------------~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAE------------------DNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH------------------HCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 334556667777777776 67888888888888 8889999999999999999874 78899
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 286 ~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
+++++++++|.|..+|..++.++..+++|++|++++.++++++|.|..++.....+..
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887766543
No 92
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=3.6e-09 Score=96.70 Aligned_cols=117 Identities=24% Similarity=0.194 Sum_probs=108.4
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+.++.+.||..|..|+|++|.+.|..||+ .+.....+++|+|..+.++|+.++|+++|-+.
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~------------------ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALN------------------NDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHc------------------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 366788999999999999999999999999 78888999999999999999999999999887
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
-.+=-++++.++.++.+|..+.+..+|+++|-++..+-|+|+.++..|+.+..+.
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE 605 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc
Confidence 6666679999999999999999999999999999999999999999999887543
No 93
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.97 E-value=5.5e-09 Score=106.92 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=106.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..+.+.|++++|+..|+++++ ..|....++..+|.++...|++++|+..++++
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALS------------------LEPQNDDYQRGLILTLADAGQYDEALVKAKQL 109 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345688899999999999999999999999 88888999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
++.+|++.. ++.+|.++...|++++|+..|+++++++|+++.+...++.+..
T Consensus 110 l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 110 VSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999888777654
No 94
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.92 E-value=1.3e-08 Score=81.64 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=81.5
Q ss_pred HH-hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054 259 LR-KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 259 ~~-~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 337 (347)
.. +......+.+|..++..|++++|...|+.++.++|.+...|+.+|.++..+|+|++|+..|.+|+.++|+|+.....
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44 56677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 019054 338 LAVAKKKVS 346 (347)
Q Consensus 338 l~~~~~~~~ 346 (347)
++.+.-+++
T Consensus 109 ag~c~L~lG 117 (157)
T PRK15363 109 AAECYLACD 117 (157)
T ss_pred HHHHHHHcC
Confidence 998875543
No 95
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.91 E-value=8.1e-09 Score=110.30 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=102.3
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhh-hhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKS-SSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
++.+..+..+|..+++.|++++|+..|+++++..+.. .....+ .-+......+...+|.++.+.|++++|+..|
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~-----~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS-----SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456778889999999999999999999999832210 000000 0011112234456789999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+++++++|++..+++.+|.++..+|++++|++.|+++++++|.+..+...+..+.
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877776653
No 96
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.90 E-value=4.3e-09 Score=73.30 Aligned_cols=67 Identities=31% Similarity=0.370 Sum_probs=62.1
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
++.|+|++|+..+++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.+...++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999998888777653
No 97
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.90 E-value=2.3e-09 Score=73.99 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=58.8
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 296 (347)
.+|..+++.|+|++|+..|+++++ ..|....++..+|.|+..+|++++|+..++++++++|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK------------------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC------------------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999 88999999999999999999999999999999999998
Q ss_pred Ch
Q 019054 297 NV 298 (347)
Q Consensus 297 ~~ 298 (347)
++
T Consensus 64 ~p 65 (65)
T PF13432_consen 64 NP 65 (65)
T ss_dssp -H
T ss_pred CC
Confidence 74
No 98
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.90 E-value=1.1e-08 Score=105.69 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=101.8
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
...+..+|..+...|++++|+..|++++. ..|....++.+++.++.++|+ .+|+..+++++
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVK------------------KAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 45567778888888888888888888888 677788889999999999999 88999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
.+.|+++..+..+|.++..+|++++|+..|+++++++|.++.+...+..+..+.+
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999988888766544
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=1.2e-08 Score=89.31 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=96.7
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHH---HHHHHHHHHHHHc--------CChH
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS---QIFTNSSACKLKL--------GDLK 281 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~nla~~~~~l--------~~~~ 281 (347)
..+..+|..+++.|++++|+..|+++++ ..|... .+++.+|.++.++ ++++
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 132 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIR------------------LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAR 132 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHH
Confidence 5678899999999999999999999999 444333 4788999999886 8899
Q ss_pred HHHHHHHHHhhcCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q 019054 282 GALLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVA 341 (347)
Q Consensus 282 ~A~~~~~~al~~~p~~~~a~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~l~~~ 341 (347)
+|+..+++++..+|++..++ +.+|..|..+|++++|+..|+++++..|++ +.++..++.+
T Consensus 133 ~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 133 EAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA 212 (235)
T ss_pred HHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 99999999999999985432 467888999999999999999999998765 4677777777
Q ss_pred HHHhc
Q 019054 342 KKKVS 346 (347)
Q Consensus 342 ~~~~~ 346 (347)
...++
T Consensus 213 ~~~lg 217 (235)
T TIGR03302 213 YLKLG 217 (235)
T ss_pred HHHcC
Confidence 66554
No 100
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.90 E-value=1.6e-08 Score=79.75 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=98.3
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+...|...++.|+|.+|++.++......+ ..+....+.+.++.+|++.++|++|+..+++-
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYP---------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 356788899999999999999999998887443 44555678999999999999999999999999
Q ss_pred hhcCCCCh---hHHHHHHHHHHhcCC---------------HHHHHHHHHHHHhhCCCCHHHHHH
Q 019054 291 MRDGDDNV---KALFRQGQAYMALND---------------VDAAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 291 l~~~p~~~---~a~~~~g~~~~~~~~---------------~~~A~~~~~~al~l~P~~~~~~~~ 337 (347)
|+++|.++ -++|.+|.+++.+.. ..+|..+|++.++..|+++.+...
T Consensus 74 irLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 99999985 589999999999887 889999999999999998876654
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.89 E-value=1.9e-08 Score=98.80 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=105.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+...||.+|.+|++++|.+.+..+|+ .+|....+|..+|.||..+|+.++|+...-.|
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk------------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIK------------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 467889999999999999999999999999 88999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
-.++|.+..-|.+++....++|++.+|.-+|.+|++++|.+.....+...+.++.
T Consensus 200 AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~ 254 (895)
T KOG2076|consen 200 AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT 254 (895)
T ss_pred HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888777777666654
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.88 E-value=1.5e-08 Score=101.21 Aligned_cols=119 Identities=8% Similarity=-0.013 Sum_probs=105.3
Q ss_pred hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHH
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~ 284 (347)
.+..++.+.+....+..+.+.+++++|+..++++++ ..|.+..+++.+|.+..++|+|++|+
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~------------------~~p~~~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS------------------GGSSSAREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHhcchHHHH
Confidence 344455677889999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHH
Q 019054 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVA 341 (347)
Q Consensus 285 ~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~~l~~~ 341 (347)
..|++++..+|++.+++..+|.++..+|+.++|...|++|+.+...-. .....+..+
T Consensus 175 ~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (694)
T PRK15179 175 ACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDL 232 (694)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976433 333344433
No 103
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.88 E-value=1.3e-08 Score=108.68 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=101.2
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc--------cCCCChhhhh----------------hHHhhHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE--------KEGIDEGKSS----------------SLRKTKSQI 266 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~--------~~~~~~~~~~----------------~~~~~~~~~ 266 (347)
.+..+..+|..+...|++++|++.|+++++.-+.... ......++.. .........
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 4556788999999999999999999999985432100 0000000000 011122345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
+..+|.++...|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|.++.+...+...
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~ 538 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999999877655443
No 104
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.87 E-value=1.7e-08 Score=104.31 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=100.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+...|..++..|+|++|+..|+++++ ..|....++..+|.+++..|++++|+..++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALA------------------IDPRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 466788899999999999999999999998 66777788889999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
+..+|.+..+++.+|.++...|++++|+..|+++++++|.+..+...+..+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 238 (899)
T TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILI 238 (899)
T ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988887776666543
No 105
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.3e-08 Score=87.79 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=105.4
Q ss_pred hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC---ChH
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLK 281 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~ 281 (347)
+...++.++-+.-+|..++..|++..|...|.+|++ +.+.++.++..+|.+++... .-.
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r------------------L~g~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR------------------LAGDNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCcccH
Confidence 333455677889999999999999999999999999 89999999999999988764 367
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
++...+++|+.+||.+..+++.+|..++..|+|.+|+..++..+.+.|.+..-+..+...
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 899999999999999999999999999999999999999999999999877655555444
No 106
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.85 E-value=2.5e-08 Score=81.11 Aligned_cols=99 Identities=27% Similarity=0.333 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHhhcCCC
Q 019054 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLDTEFAMRDGDD 296 (347)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~A~~~~~~al~~~p~ 296 (347)
-|+.|.+.|+.... .+|.++..++|-|.+++.+.+ +++|+.-+++||.++|+
T Consensus 6 ~FE~ark~aea~y~------------------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~ 67 (186)
T PF06552_consen 6 FFEHARKKAEAAYA------------------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN 67 (186)
T ss_dssp HHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHH------------------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc
Confidence 47788888888887 899999999999999888743 56788999999999999
Q ss_pred ChhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 297 NVKALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 297 ~~~a~~~~g~~~~~~~~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
...|++.+|.+|..++. |++|..+|++|...+|++..++..|..+.+
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 99999999999988665 888999999999999999999999988764
No 107
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.84 E-value=3.8e-08 Score=92.77 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=52.0
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+..+|..+.+.|++++|+..|.++++ ..|....++..+|.++.+.|++++|+..+++++..+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALA------------------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh------------------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34455555556666666666666655 333344445555555555555555555555555554
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054 295 DDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (347)
Q Consensus 295 p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 331 (347)
|.+ ..++..++.+|...|++++|+..++++++..|+.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 443 2334445555555555555555555555555543
No 108
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.84 E-value=3.6e-08 Score=92.97 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHH
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAK 342 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~ 342 (347)
...+.++|.++.+.+++++|+..++++++.+|++..+++.+|.++...|++++|++.|+++++.+|.+. .+...+..+.
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 345778888899999999999999999999999899999999999999999999999999999888753 4455565554
Q ss_pred HHh
Q 019054 343 KKV 345 (347)
Q Consensus 343 ~~~ 345 (347)
...
T Consensus 260 ~~~ 262 (389)
T PRK11788 260 QAL 262 (389)
T ss_pred HHc
Confidence 443
No 109
>PLN02789 farnesyltranstransferase
Probab=98.83 E-value=6.3e-08 Score=88.39 Aligned_cols=106 Identities=16% Similarity=0.093 Sum_probs=96.8
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChhH
Q 019054 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKA 300 (347)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~~p~~~~a 300 (347)
+...+++++|+..+.++|. ++|....+|..++.++.+++ ++++++..++++++.+|.+..+
T Consensus 47 l~~~e~serAL~lt~~aI~------------------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa 108 (320)
T PLN02789 47 YASDERSPRALDLTADVIR------------------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI 108 (320)
T ss_pred HHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence 4456789999999999999 99999999999999999998 6899999999999999999999
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 301 LFRQGQAYMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 301 ~~~~g~~~~~~~~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
|+.++.++..+++. ++++..++++++++|.|-.++...+.+...+
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 99999999999874 7889999999999999999988777776554
No 110
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.82 E-value=1.2e-08 Score=94.62 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=66.8
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA---LFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.+|..+.+++|+|.+|+++|+|++|+..|++||+++|++..+ ||++|.+|..+|++++|+++|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999999999999865 999999999999999999999999998
No 111
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.79 E-value=5e-08 Score=99.95 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=100.5
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+...|..+...|++++|++.+++++. ..|.+..++.++|.++..+|++++|+..+++++.
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAY------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3456778888899999999999999999 8888899999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
++|++..+++.+|.++..+++|++|...++++++..|+++.+...-
T Consensus 422 l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 422 LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999766543
No 112
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.78 E-value=7.5e-08 Score=79.92 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=90.7
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
..+.+|-...|..+...+.+.++. ........+++++|.++..++++++|+..+++++.+.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~ 68 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPT----------------TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP 68 (168)
T ss_pred cccccccccccccchhhhhHhccC----------------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc
Confidence 345566666777777777555441 1344567889999999999999999999999999987763
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 298 ---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 298 ---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
+.+++++|.++..+|++++|+..|+++++++|........++.+..
T Consensus 69 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 69 YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999988888877766
No 113
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.78 E-value=3.1e-08 Score=95.90 Aligned_cols=105 Identities=24% Similarity=0.180 Sum_probs=98.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHH--HHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL--DTE 288 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~--~~~ 288 (347)
.+..++..|..+..+|+..+|.+.|..|+. ++|....+...+|.|+++.|+..-|.. ...
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~------------------ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALA------------------LDPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 355678889999999999999999999999 999999999999999999999888888 999
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
.|+++||.+.++||.+|.++..+|+.++|.++|+.|++|++.+|.
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999999999999999998875
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.78 E-value=6e-08 Score=83.07 Aligned_cols=120 Identities=22% Similarity=0.236 Sum_probs=94.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..++..|..++..|+|.+|+..|++.+...+ ..+....+.+.+|.++.+.++|..|+..+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P---------------~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP---------------NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T---------------TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467889999999999999999999999998543 34566788999999999999999999999999
Q ss_pred hhcCCCCh---hHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHh
Q 019054 291 MRDGDDNV---KALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDGG---IKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~~---~a~~~~g~~~~~~~-----------~~~~A~~~~~~al~l~P~~~~---~~~~l~~~~~~~ 345 (347)
++..|++. .++|.+|.+++.+. ...+|+..|+..++..|+++- +...|..+...+
T Consensus 69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 99999874 68999999977653 345899999999999998765 445555665554
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=4.1e-08 Score=85.86 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
.+.-+-+-|.-.++.++|++|+..|++||+++|.|+-.|.+||.+|.++|.|+.|+++++.|+.++|+...++..|..++
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34456677888999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred HHh
Q 019054 343 KKV 345 (347)
Q Consensus 343 ~~~ 345 (347)
-.+
T Consensus 160 ~~~ 162 (304)
T KOG0553|consen 160 LAL 162 (304)
T ss_pred Hcc
Confidence 544
No 116
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.8e-08 Score=88.73 Aligned_cols=87 Identities=18% Similarity=0.278 Sum_probs=78.9
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD--D-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p--~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 335 (347)
+.-..+.+++|+|.|++..++++-++..+++|+.... + -+..||++|.+....|++..|.++|+-|+.-+|++.++.
T Consensus 353 mG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 353 MGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred hcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 5666778999999999999999999999999997653 2 378899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 019054 336 KELAVAKKKV 345 (347)
Q Consensus 336 ~~l~~~~~~~ 345 (347)
++|+.++.+.
T Consensus 433 nNLavL~~r~ 442 (478)
T KOG1129|consen 433 NNLAVLAARS 442 (478)
T ss_pred HhHHHHHhhc
Confidence 9999987654
No 117
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.75 E-value=2.5e-08 Score=71.50 Aligned_cols=68 Identities=28% Similarity=0.358 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC----CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG----DD---NVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~----p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
|..+.++.++|.+|..+|+|++|+.++++++.+. ++ -+.+++++|.++..+|++++|++.+++|+++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5667899999999999999999999999999652 22 26789999999999999999999999999863
No 118
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.1e-08 Score=87.90 Aligned_cols=127 Identities=18% Similarity=0.167 Sum_probs=105.4
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+.+++..|..++-..+-+.|+.+|+++|++-+ .-.......+.+.....+.+.|.-.++.|+|.+|-+.|+.
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp------dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP------DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccCh------hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 3578899999999999999999999999999432 1122223346677778899999999999999999999999
Q ss_pred HhhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 290 AMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 290 al~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
||.++|++ ++.|++||.++..+|+.++|+.++..|++|+|.--.+....+.+.
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 99999987 688999999999999999999999999999986544444444443
No 119
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.75 E-value=2.5e-08 Score=69.41 Aligned_cols=67 Identities=24% Similarity=0.192 Sum_probs=60.8
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHH
Q 019054 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301 (347)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~ 301 (347)
+++.|+|++|+..|++++. ..|.+..++..+|.||++.|++++|...+++++..+|+++..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ------------------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH------------------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 3578999999999999999 8999999999999999999999999999999999999988777
Q ss_pred HHHHH
Q 019054 302 FRQGQ 306 (347)
Q Consensus 302 ~~~g~ 306 (347)
..++.
T Consensus 63 ~l~a~ 67 (68)
T PF14559_consen 63 QLLAQ 67 (68)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76664
No 120
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.75 E-value=1.2e-07 Score=83.38 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=96.2
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..++..|..+++.|+|++|++.|++.+...+ ..+....+.+++|.+|+++++|++|+..+++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---------------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 355678889999999999999999999998332 23445556799999999999999999999999
Q ss_pred hhcCCCC---hhHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHh
Q 019054 291 MRDGDDN---VKALFRQGQAYMALN---------------D---VDAAVESFEKALKLEPNDGG---IKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~---~~a~~~~g~~~~~~~---------------~---~~~A~~~~~~al~l~P~~~~---~~~~l~~~~~~~ 345 (347)
++.+|++ ..++|.+|.++..++ + -.+|+..|++.++..|+.+- +...|..++.++
T Consensus 96 i~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 96 IRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 9999987 568999999875554 1 25788999999999998654 555555555554
No 121
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.73 E-value=1.1e-07 Score=82.53 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=100.3
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+++.|-.+++.|+|..|...|...++..+ ..+..+.+++.||.+++.+|+|+.|...|..+++
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP---------------~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYP---------------NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------CCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4478888899999999999999999998443 3445668899999999999999999999999999
Q ss_pred cCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 293 DGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 293 ~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
-.|++ +.+++.+|.+...+|+.++|...|++.++-.|..+.+...-..+
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 88877 56799999999999999999999999999999988777665544
No 122
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.71 E-value=1.4e-07 Score=68.49 Aligned_cols=79 Identities=33% Similarity=0.413 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+++++|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|+..|++++++.|.+..+...++.+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999998777777665543
No 123
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.71 E-value=1.7e-07 Score=72.72 Aligned_cols=99 Identities=20% Similarity=0.116 Sum_probs=86.2
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+++.|..+-..|+.++|+..|++++..- -..+....++..+|.++..+|++++|+..+++++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---------------L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG---------------LSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788888999999999999999999821 02445567999999999999999999999999999
Q ss_pred cCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 293 DGDD---NVKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 293 ~~p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
..|+ +......++.++..+|++++|+..+..++.
T Consensus 67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9888 778888899999999999999999987775
No 124
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=7.9e-08 Score=89.55 Aligned_cols=117 Identities=21% Similarity=0.164 Sum_probs=103.9
Q ss_pred hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc---CChH
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---GDLK 281 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---~~~~ 281 (347)
.-++++.++.++..||..|-.+....|+..|.+++. ..+....+|.|+|.++++. ++.-
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q------------------~~~~~~~~l~nraa~lmkRkW~~d~~ 428 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ------------------YVPDAIYLLENRAAALMKRKWRGDSY 428 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh------------------hccchhHHHHhHHHHHHhhhccccHH
Confidence 445666788999999999999999999999999999 7788899999999999985 6788
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
.|+.+|..|++++|...|||++++.++..++++.+|+.+...+....|.+........
T Consensus 429 ~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~ 486 (758)
T KOG1310|consen 429 LALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVL 486 (758)
T ss_pred HHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhh
Confidence 9999999999999999999999999999999999999998888888886665544433
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=1.5e-07 Score=80.86 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=87.8
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
.++.++..|+-+.+.....+++. ..+....++.-.|......|+|.+|+..+.+|..++|++
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~------------------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d 133 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI------------------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD 133 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc------------------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence 44444445555555555555443 344455566668999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+++|.-+|.+|.++|++++|...|.+++++.|+++.+..+|+-..
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 999999999999999999999999999999999999999987654
No 126
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.68 E-value=7.4e-08 Score=68.98 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=62.1
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+.++|..++..|+|++|+.+|++++++.... ....+..+.++.++|.|+..+|++++|+.++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-----------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467889999999999999999999999999963222 113456789999999999999999999999999
Q ss_pred HhhcC
Q 019054 290 AMRDG 294 (347)
Q Consensus 290 al~~~ 294 (347)
|+++.
T Consensus 72 al~i~ 76 (78)
T PF13424_consen 72 ALDIF 76 (78)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 99763
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.68 E-value=1.7e-07 Score=87.23 Aligned_cols=80 Identities=19% Similarity=0.134 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+...|..++..++|++|+..|++||+++|+++.+|+.+|.+|..+|++++|+.+++++++++|.+..++..++.+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999988876654
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=1.4e-07 Score=76.26 Aligned_cols=98 Identities=23% Similarity=0.210 Sum_probs=81.6
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
..+...+|..++..|+|++|+..|++++... ........+.+++|.+++.+|+|++|+..++. +
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---------------~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~ 111 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANA---------------PDPELKPLARLRLARILLQQGQYDEALATLQQ-I 111 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-c
Confidence 4567788999999999999999999999821 02344567889999999999999999999966 3
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 325 (347)
.-.+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 112 ~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 112 PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4444557788999999999999999999999875
No 129
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=2.9e-07 Score=76.73 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=77.1
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 335 (347)
..+....+++++|.++...|++++|+.+|++++.+.|+. +.+++.+|.++..+|++++|+..|++++++.|.+....
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 456777889999999999999999999999999887654 57999999999999999999999999999999999888
Q ss_pred HHHHHHHHHh
Q 019054 336 KELAVAKKKV 345 (347)
Q Consensus 336 ~~l~~~~~~~ 345 (347)
..++.+...+
T Consensus 110 ~~lg~~~~~~ 119 (172)
T PRK02603 110 NNIAVIYHKR 119 (172)
T ss_pred HHHHHHHHHc
Confidence 7777765443
No 130
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.67 E-value=1.7e-07 Score=95.44 Aligned_cols=111 Identities=13% Similarity=0.023 Sum_probs=72.5
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+...+..+...++.|+|..|+..|.++++ .+|....+...++.++..+|++++|+.+|++++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~------------------~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESK------------------AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 44667888889999999999999999998 555553232355666666666666666666666
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
.-.|.+..++..+|.+|..+|+|++|++.|+++++++|+++.+...+..
T Consensus 96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~ 144 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIM 144 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 2223333333334556666666666666666666666666666655443
No 131
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.4e-07 Score=78.76 Aligned_cols=113 Identities=14% Similarity=0.050 Sum_probs=104.4
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.|.-+++.|+.|-..|-+.-|.--|.+++. +.|..+.+++-+|..+...|+|+.|.+.++.+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa------------------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~ 125 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 125 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhh------------------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence 678899999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
+++||.+--++.+||.+++--|+|.-|.+++.+-.+-+|+||--.-.|-..
T Consensus 126 ~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 126 LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999998644433333
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=2.6e-07 Score=85.66 Aligned_cols=115 Identities=15% Similarity=0.085 Sum_probs=95.4
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
..+-.+...+..|+++.|...+...++ ..|.++.++..++.++++.++..+|++.+++++.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~------------------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA------------------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 344455555666666666666666666 67788888888999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|...-..+.+|.+|...|++.+|+..+++.+.-+|+|+..+..|+++...++
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 99998899999999999999999999999999999999999999988876654
No 133
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.65 E-value=7e-08 Score=68.11 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=64.1
Q ss_pred CccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh
Q 019054 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (347)
Q Consensus 219 g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~ 298 (347)
...+++.++|++|++.+++++. ..|..+.++..+|.|+.++|++++|+.+++++++..|++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE------------------LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH------------------hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 3567899999999999999999 8999999999999999999999999999999999999998
Q ss_pred hHHHHHHH
Q 019054 299 KALFRQGQ 306 (347)
Q Consensus 299 ~a~~~~g~ 306 (347)
.+...++.
T Consensus 64 ~~~~~~a~ 71 (73)
T PF13371_consen 64 DARALRAM 71 (73)
T ss_pred HHHHHHHh
Confidence 87766553
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=3.1e-07 Score=85.20 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=101.9
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+-..+..+++.++.++|++.+++++. +.|....+..|+|.++++.|++.+|+..++..+.-+
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~------------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALA------------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh------------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 34567788899999999999999999 889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
|+++..|..+|++|..+|+-.+|...+.+.+.+...-.++...+..++++.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988887777777777666654
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.62 E-value=5.1e-07 Score=69.75 Aligned_cols=81 Identities=19% Similarity=0.264 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKEL 338 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~l 338 (347)
..++++|..+.+.|++++|+..|.+++..+|++ ..+++.+|.++...+++++|+..|++++..+|++ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 568899999999999999999999999999876 6799999999999999999999999999999985 4566666
Q ss_pred HHHHHHh
Q 019054 339 AVAKKKV 345 (347)
Q Consensus 339 ~~~~~~~ 345 (347)
+.+...+
T Consensus 83 ~~~~~~~ 89 (119)
T TIGR02795 83 GMSLQEL 89 (119)
T ss_pred HHHHHHh
Confidence 6665543
No 136
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=1.5e-07 Score=90.81 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=100.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+.+.+..|+..+..++|++|..+++.+++ ++|.....|+++|.|++++++++.|..+|..+
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLE------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhh------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 456778888889999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 337 (347)
+.++|++..+|.+++.+|..+++-.+|...+++|++.+-++..++.+
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN 592 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN 592 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec
Confidence 99999999999999999999999999999999999998666555544
No 137
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.60 E-value=1.2e-07 Score=93.99 Aligned_cols=112 Identities=19% Similarity=0.245 Sum_probs=96.8
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-- 294 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~-- 294 (347)
-+|-++-.+|++.+|+..|.+..+ .......+|.|+|.||+.+|+|..|++.|+.+++..
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrE------------------a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVRE------------------ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHH------------------HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356666777777777777777766 444567899999999999999999999999999753
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
.++...+..+|.+++..+.+.+|.+.+.+|+.+.|.++.+..+++.+.+++.
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999998887653
No 138
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.59 E-value=1.8e-07 Score=84.33 Aligned_cols=118 Identities=21% Similarity=0.182 Sum_probs=90.4
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+......+...++++++...++++.... ..+....+|..+|.++.+.|++++|+..+++|++
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELP----------------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T-------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhcc----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334455566778889999999988876511 2246678899999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++|++..++..++.++...|++++|.+.++...+..|.++.++..++.+...++
T Consensus 175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999998888999888888888776654
No 139
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=4.8e-07 Score=85.40 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=57.7
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
+..|..+++.|+..+|+-.|+.|+. .+|..+.+|..||.++...++-..||..+.++++++|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk------------------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP 350 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK------------------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP 350 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh------------------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC
Confidence 5678889999999999999999998 7777777777777777777777777777777777777
Q ss_pred CChhHHHHHHHH
Q 019054 296 DNVKALFRQGQA 307 (347)
Q Consensus 296 ~~~~a~~~~g~~ 307 (347)
+|-+++..+|.+
T Consensus 351 ~NleaLmaLAVS 362 (579)
T KOG1125|consen 351 TNLEALMALAVS 362 (579)
T ss_pred ccHHHHHHHHHH
Confidence 765544444443
No 140
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.55 E-value=5.1e-07 Score=89.69 Aligned_cols=118 Identities=24% Similarity=0.292 Sum_probs=106.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+++-+|-+|+|+.+...+..++.... ..+..+..++.+|.+|-.+|+|++|-.+|.++
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTE---------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 466788899999999999999999999998431 45667778999999999999999999999999
Q ss_pred hhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 291 MRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 291 l~~~p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
+..+|++ .-+++.+|+.|...|+++.|+.+|++.++..|++.+....|+.+..
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 9999998 8999999999999999999999999999999999999888877653
No 141
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=2.7e-07 Score=85.85 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=61.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHH---HHHHHHHHHHHcCChHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ---IFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~l~~~~~A~~~~ 287 (347)
.+..+.++|..+++.|+|++|+..|++||+ ++|.... +|+|+|.||.++|++++|+.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe------------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE------------------LNPNPDEAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 677899999999999999999999999999 8888875 4999999999999999999999
Q ss_pred HHHhhcC
Q 019054 288 EFAMRDG 294 (347)
Q Consensus 288 ~~al~~~ 294 (347)
++|+++.
T Consensus 136 rrALels 142 (453)
T PLN03098 136 RTALRDY 142 (453)
T ss_pred HHHHHhc
Confidence 9999984
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=8.4e-07 Score=75.86 Aligned_cols=109 Identities=18% Similarity=0.115 Sum_probs=59.7
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
.+-.|..+-..|+|++|+++|+..|. .+|.+..++-..-.+...+|+--+||+.....++..
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~------------------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F 150 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLE------------------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF 150 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhc------------------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence 34566677788999999999998887 334444444333333334444444444444444444
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
+.+.+||..++.+|...|+|++|.-+|++.+-+.|.++.....++.+
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444433
No 143
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.49 E-value=1.1e-06 Score=84.26 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=101.2
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..++..|..|...++|.+|+..|++|+.+....... ..|..+..+.|||..|.+.|+|++|..+|++|+
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~----------~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE----------DHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 4455679999999999999999999999976543222 678888999999999999999999999999999
Q ss_pred hcCC--------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CC---HHHHHHHHHHHHHhc
Q 019054 292 RDGD--------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEP-----ND---GGIKKELAVAKKKVS 346 (347)
Q Consensus 292 ~~~p--------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P-----~~---~~~~~~l~~~~~~~~ 346 (347)
++.. .=...+...+.++..++++++|+..+++++++-- ++ +.+..+|+.+....+
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 7642 2256788899999999999999999999998742 23 346666766665544
No 144
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.48 E-value=1.1e-06 Score=89.66 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=98.2
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
...+...|..+...|+|++|++.|+++++ .+|.+..++..++..+..++++++|+..+++++
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~------------------~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLK------------------KDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 44556667788889999999999999999 888889999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
..+|.+... ..++.++..++++.+|++.|+++++++|++.++...+..+...+
T Consensus 164 ~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 164 ERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred ccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 999985554 55566666678887799999999999999999888777665543
No 145
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=2.1e-06 Score=75.91 Aligned_cols=88 Identities=20% Similarity=0.216 Sum_probs=78.4
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKE 337 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~ 337 (347)
..-..+..|+.+|..++...+.+.|+....+|+..+|.++.|-.-+|.++...|+|+.|++.++.+++.||. -+++...
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 444567789999999999999999999999999999999999999999999999999999999999999997 4567777
Q ss_pred HHHHHHHhc
Q 019054 338 LAVAKKKVS 346 (347)
Q Consensus 338 l~~~~~~~~ 346 (347)
|..+...++
T Consensus 255 L~~~Y~~lg 263 (389)
T COG2956 255 LYECYAQLG 263 (389)
T ss_pred HHHHHHHhC
Confidence 777776654
No 146
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.47 E-value=1.3e-06 Score=86.17 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=96.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
...+++.+|.++-.+|+.++|...+..|.. ++|.+...|..++....++|++.+|+-+|.+|
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 456788999999999999999999999988 88888899999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
|..+|.+++..++++..|..+|++..|...|.++++++|
T Consensus 234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999
No 147
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.40 E-value=1.5e-06 Score=83.29 Aligned_cols=120 Identities=15% Similarity=0.084 Sum_probs=95.4
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.......+|..++.+|+|+.|+..++.|++.+...+.. ..+.......++|..|+.+++|.+|+..|++|
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~----------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A 267 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL----------KHLVVASMLNILALVYRSLGKYDEAVNLYEEA 267 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc----------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34556679999999999999999999999964332221 35566667778999999999999999999999
Q ss_pred hhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHH
Q 019054 291 MRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PNDGGIKKELAV 340 (347)
Q Consensus 291 l~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~-----P~~~~~~~~l~~ 340 (347)
+.+ +|.-+-++.++|.+|...|+|++|..++++|+++- ...+++...+..
T Consensus 268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 965 34447789999999999999999999999999884 234444444443
No 148
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.2e-06 Score=79.90 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=88.4
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+.+++..+.+.++|.+|+.+..++|. +++.+..+++.+|.+++.+++|+.|+.++++|+++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe------------------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLE------------------LDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHh------------------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 357889999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhhCC
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAA-VESFEKALKLEP 329 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A-~~~~~~al~l~P 329 (347)
+|+|-.+...+..+.....++.+. .+.|.+.+..-+
T Consensus 321 ~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 321 EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999988888888888887777665 677888887655
No 149
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.37 E-value=1.8e-06 Score=80.31 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=88.8
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
...+...|..+...|++++|+..++++++ ..|....++..+|.++...|++++|+..+++++
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALE------------------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 44556778888999999999999999999 778888899999999999999999999999999
Q ss_pred hcCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 292 RDGDDNV----KALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 292 ~~~p~~~----~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
...|.+. ..+..+|.++..+|++++|+..|++++...|
T Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 176 DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 9887432 4567899999999999999999999987776
No 150
>PRK11906 transcriptional regulator; Provisional
Probab=98.36 E-value=4.8e-06 Score=77.77 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHHHH---HHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc---------CChHHHHHHHHHHhh
Q 019054 225 KQDYKMALRKYRKAL---RYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---------GDLKGALLDTEFAMR 292 (347)
Q Consensus 225 ~g~y~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---------~~~~~A~~~~~~al~ 292 (347)
...-+.|+..+.+|+ . ++|..+.+|.-+|.|++.+ ..-.+|++..++|++
T Consensus 271 ~~~~~~Al~lf~ra~~~~~------------------ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSD------------------IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHHHHHHHhhccc------------------CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 346678888999999 5 7888888888888888865 124567888888889
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
++|.++.|++.+|.++...++++.|...|++|+.++|+...++...+.+
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 9999999999999988888889999999999999999888877766654
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.35 E-value=3.2e-06 Score=82.23 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=67.1
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
++..+.++.-+|..+...|++++|...+++|+.++| ++.+|..+|.++...|++++|++.|++|++++|.++.
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 444557788889999999999999999999999999 6899999999999999999999999999999999775
No 152
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.1e-06 Score=82.66 Aligned_cols=115 Identities=23% Similarity=0.152 Sum_probs=108.5
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
+.+..++..|.-|+..+++.+|.++|.||-. +++....+|...|..|.-.+..++|+..|..
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~------------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATT------------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhh------------------cCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 3566788999999999999999999999998 9999999999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
|-++-|......+.+|.=|..+++++.|.+.|..|+.+.|.|+-+..+++.+.
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVA 424 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhee
Confidence 99999999999999999999999999999999999999999999999888763
No 153
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.33 E-value=2.6e-06 Score=86.42 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=71.3
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
...++..+...+...+++++|++..+.+++ ..|....+|+-+|..+.+.+++.+|... .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~------------------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK------------------EHKKSISALYISGILSLSRRPLNDSNLL--NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCCcceehHHHHHHHHHhhcchhhhhhh--hh
Confidence 455667777777788999999999998888 5555556666666666655555555444 44
Q ss_pred hhcCCCCh-------------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 291 MRDGDDNV-------------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 291 l~~~p~~~-------------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
+.+-+.+. .|++.+|.||..+|++++|.+.|+++++++|+|+.+.++++-.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~ 159 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATS 159 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 44433333 5666666666666666666666666666666666666655543
No 154
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.33 E-value=2.9e-06 Score=81.11 Aligned_cols=115 Identities=16% Similarity=0.197 Sum_probs=98.3
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.++..+...|..+||...+...+..|. -.|...+.+.-.|.....+|+-++|...+..+++.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~------------------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILK------------------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH------------------hCCccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence 445556667788899988888888888 56667777777888888999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
|+.+.-+|.-+|.++..-++|++|+++|+.|+.++|+|.+++.-|+.++..++
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR 123 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888876654
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.32 E-value=9.8e-06 Score=62.85 Aligned_cols=81 Identities=21% Similarity=0.211 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKEL 338 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~---~~~~~~~l 338 (347)
.+.+++|.++-.+|+.++|+..|++++....+. ..++..+|.++..+|++++|+..+++++.-.|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999976544 679999999999999999999999999999898 66666666
Q ss_pred HHHHHHh
Q 019054 339 AVAKKKV 345 (347)
Q Consensus 339 ~~~~~~~ 345 (347)
+.+...+
T Consensus 82 Al~L~~~ 88 (120)
T PF12688_consen 82 ALALYNL 88 (120)
T ss_pred HHHHHHC
Confidence 6554443
No 156
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.32 E-value=1e-05 Score=77.05 Aligned_cols=116 Identities=16% Similarity=0.083 Sum_probs=76.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+......|...+..|+|+.|.+...++.+ ..|.....+.-.|.++.++|+++.|..++.++
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~------------------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNAD------------------HAAEPVLNLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566667777788888888888888888777 34444445555666666667777777777776
Q ss_pred hhcCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 291 MRDGDDNV-KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 291 l~~~p~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
.+..|++. .+...++.++...|++++|++.+++.++..|+++.+...+..+...
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 66666654 3444456666667777777777777777777766666655555433
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=2.9e-06 Score=79.20 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=79.8
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
..++..+...++-.+|++...+++. ..|....++...|..+++.++++.|+..+++|+.+.|
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~------------------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP 265 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALK------------------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSP 265 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3355555566677788888888887 6667788888889999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
++.++|+.++.+|..+|+|++|+..+..+-.+.+.+...
T Consensus 266 ~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~ 304 (395)
T PF09295_consen 266 SEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK 304 (395)
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence 999999999999999999999997776554443344333
No 158
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.27 E-value=1.5e-06 Score=51.32 Aligned_cols=32 Identities=38% Similarity=0.797 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
++|+++|.+|..++++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56666666666666666666666666666665
No 159
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.26 E-value=1.8e-05 Score=75.01 Aligned_cols=116 Identities=14% Similarity=0.075 Sum_probs=68.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+......|...+-.|+|+.|.+...++-+ ..+.-...+...+.+..++|+++.|..++.++
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~------------------~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A 144 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNAD------------------HAEQPVVNYLLAAEAAQQRGDEARANQHLERA 144 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455566667777777777777766655544 11111122333344446667777777777777
Q ss_pred hhcCCCChhH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 291 MRDGDDNVKA-LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 291 l~~~p~~~~a-~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
.+.+|++..+ ....+..+...|++++|++.+++..+.+|+++.+...+..+...
T Consensus 145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR 199 (398)
T ss_pred HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6666665432 23446666666777777777777777777766666665555433
No 160
>PRK11906 transcriptional regulator; Provisional
Probab=98.25 E-value=9.1e-06 Score=75.92 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=84.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~ 303 (347)
...+-.+|.+.-++|++ +++.++.++..+|.+....++++.|+..+++|+.++|+++.++|.
T Consensus 316 ~~~~~~~a~~~A~rAve------------------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~ 377 (458)
T PRK11906 316 LELAAQKALELLDYVSD------------------ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYY 377 (458)
T ss_pred chHHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHH
Confidence 45677788888888888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054 304 QGQAYMALNDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 332 (347)
+|.+....|+.++|.+.+++|++++|.-.
T Consensus 378 ~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 378 RALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999999999643
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.25 E-value=3.1e-05 Score=69.87 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=86.2
Q ss_pred hhHHHHHHcCccccch-hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
..+..+..+|..+.+. +++++|+++|++|+.+...- ........++.++|.++.++++|++|+..|+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e------------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE------------GSPHSAAECLLKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3477889999999998 99999999999999976421 1334456788999999999999999999999
Q ss_pred HHhhcCCC------Chh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 289 FAMRDGDD------NVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 289 ~al~~~p~------~~~-a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
++....-+ +++ .++..+.+++..|++-.|...+++....+|.
T Consensus 180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99875422 233 4567889999999999999999999999985
No 162
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.22 E-value=1.3e-05 Score=78.21 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=101.0
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
...+..+.+.+.-++|..+..+|-. ..+..+..|+.+|.++...|++.+|.+.|..|+.++|
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASK------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 3444455566667777778888877 8889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 296 DNVKALFRQGQAYMALNDVDAAVE--SFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 296 ~~~~a~~~~g~~~~~~~~~~~A~~--~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+++.+...+|.++...|+..-|.. .+..+++++|.+.++|..++.+.++++
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 999999999999999999888888 999999999999999999999988765
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=3.1e-05 Score=62.53 Aligned_cols=119 Identities=12% Similarity=0.020 Sum_probs=87.1
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+...+......+..+++..+...+++.+.-.+ ..+....+.+.+|.+++..|++++|+..++.+
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYP---------------SSPYAALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444555555555677888888777777776111 22234677888999999999999999999999
Q ss_pred hhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 291 MRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+...|+. ..+.+++|.++...|+|++|+..++. ..-.+-.+.+...++.+....
T Consensus 75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQ 131 (145)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHC
Confidence 9987665 56899999999999999999999966 233334555555555554443
No 164
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.6e-05 Score=72.59 Aligned_cols=101 Identities=19% Similarity=0.103 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 019054 226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305 (347)
Q Consensus 226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g 305 (347)
.--++|...|+++|+ +.|....+...+|..+..-|.+..++..++++|...|+ .-.+..+|
T Consensus 418 ~~rEKAKkf~ek~L~------------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lg 478 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLK------------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLG 478 (564)
T ss_pred hhHHHHHHHHHhhhc------------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHH
Confidence 334566666677766 89999999999999999999999999999999998875 45678899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 306 QAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 306 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
..+...+.+.+|...|..|+.++|++...+..|..+++..
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998764
No 165
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=2.1e-05 Score=69.67 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=101.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
...++..+|..|+..|-|+.|...|....+ .......++..+..+|.+-.+|++||+..++.
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~d------------------e~efa~~AlqqLl~IYQ~treW~KAId~A~~L 167 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVD------------------EGEFAEGALQQLLNIYQATREWEKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhc------------------chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567788899999999999999999988876 55666778888999999999999999999999
Q ss_pred hhcCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 291 MRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 291 l~~~p~~-----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
.++.+.. +..|+-++..+....+.+.|...+++|++-+|.+..+.-.++.+.-.
T Consensus 168 ~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 168 VKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA 226 (389)
T ss_pred HHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh
Confidence 9998765 67899999999999999999999999999999988777777666543
No 166
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=5e-05 Score=65.23 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHH
Q 019054 226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305 (347)
Q Consensus 226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g 305 (347)
|+--+||+....-++ .=+.+..+|..+|..|...++|.+|.-++++.+-+.|.++..+.++|
T Consensus 134 GK~l~aIk~ln~YL~------------------~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD------------------KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA 195 (289)
T ss_pred CCcHHHHHHHHHHHH------------------HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 344488888888887 55677899999999999999999999999999999999999999999
Q ss_pred HHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 306 QAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 306 ~~~~~~~---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
.+++-+| +++-|.++|.++++++|.+...+..+-.+-
T Consensus 196 e~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 196 EVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 9999887 577799999999999997777666655443
No 167
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.19 E-value=4.6e-06 Score=52.50 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555566666666666666666666666666665555554
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.19 E-value=2.6e-05 Score=63.94 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=90.9
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
......+|+.+.+.|+|.+|..+|++++. ..-.....++..+|.+.+..+++..|...+++..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qals-----------------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALS-----------------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----------------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 44567889999999999999999999997 2444566788999999999999999999999999
Q ss_pred hcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 292 RDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 292 ~~~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
+.+|. ++..+...|.+|..+|++++|...|+.++...|.
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 99985 4788899999999999999999999999999985
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=2.5e-06 Score=61.99 Aligned_cols=69 Identities=26% Similarity=0.337 Sum_probs=60.0
Q ss_pred cCChHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 277 LGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 277 l~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
.++|+.|+..++++++.+|. +...++.+|.+|+.+|+|++|+..+++ .+.+|.+......++.+.-.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 58999999999999999995 567788899999999999999999999 8899988888888887766554
No 170
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.18 E-value=1.9e-06 Score=50.94 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=31.2
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 019054 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319 (347)
Q Consensus 287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~ 319 (347)
|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999963
No 171
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.17 E-value=1.3e-05 Score=74.51 Aligned_cols=132 Identities=11% Similarity=-0.040 Sum_probs=98.9
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-------------ccCCCChhh------hhhHHhhHHHHHHHHHHH
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-------------EKEGIDEGK------SSSLRKTKSQIFTNSSAC 273 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-------------~~~~~~~~~------~~~~~~~~~~~~~nla~~ 273 (347)
......|..++..|++++|+..++++++..+.-. ........- .....+....++..+|.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 3455677788899999999999999987644211 000000000 112345555677789999
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHH
Q 019054 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI----KKELAVAKKK 344 (347)
Q Consensus 274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~----~~~l~~~~~~ 344 (347)
+..+|++++|+..++++++++|++..++..+|.++...|++++|+..+++++...|.++.. ...++.+...
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998864433 2245555443
No 172
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.16 E-value=1.4e-05 Score=76.11 Aligned_cols=114 Identities=18% Similarity=0.041 Sum_probs=68.0
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHH--HHHHHHHHHHcCChHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI--FTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~l~~~~~A~~~~~ 288 (347)
........|..+...|++++|+..++++++.. |..... ..-+....+..++.+.++..++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~------------------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL------------------GDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC------------------CCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 45667778889999999999999999999932 222211 0112222233455566666666
Q ss_pred HHhhcCCCCh--hHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHH
Q 019054 289 FAMRDGDDNV--KALFRQGQAYMALNDVDAAVESFE--KALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 289 ~al~~~p~~~--~a~~~~g~~~~~~~~~~~A~~~~~--~al~l~P~~~~~~~~l~~~~~ 343 (347)
++++.+|+++ ..+..+|.++...|+|++|.+.|+ ++++..|++.... .++.+..
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~ 381 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFD 381 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHH
Confidence 6666666666 555556666666666666666666 3555555444422 4444433
No 173
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.16 E-value=5.1e-06 Score=48.94 Aligned_cols=34 Identities=47% Similarity=0.793 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 331 (347)
+++++.+|.++..+|+|++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777764
No 174
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=2.3e-06 Score=75.78 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=42.1
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
-|.....++..|.++..++++++|+++|+.+++++|.+.++.--.|.-|+--++.+-|+.+|++.+++--.+++...+++
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Nig 365 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIG 365 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555545555444444
Q ss_pred H
Q 019054 340 V 340 (347)
Q Consensus 340 ~ 340 (347)
.
T Consensus 366 L 366 (478)
T KOG1129|consen 366 L 366 (478)
T ss_pred H
Confidence 3
No 175
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.14 E-value=3.9e-06 Score=49.53 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
+.+|+++|.+|..++++++|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3579999999999999999999999999999974
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.13 E-value=3e-05 Score=68.82 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=68.5
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 019054 264 SQIFTNSSACK-LKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKK 336 (347)
Q Consensus 264 ~~~~~nla~~~-~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~ 336 (347)
....++.|..+ ++.++|++|+..|+..++..|++ +.++|++|.+|+..|+|++|+..|+++++..|++ ++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45677787776 66799999999999999999998 5899999999999999999999999999999975 45555
Q ss_pred HHHHHHHH
Q 019054 337 ELAVAKKK 344 (347)
Q Consensus 337 ~l~~~~~~ 344 (347)
.++.+...
T Consensus 222 klg~~~~~ 229 (263)
T PRK10803 222 KVGVIMQD 229 (263)
T ss_pred HHHHHHHH
Confidence 55555543
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.12 E-value=2.8e-05 Score=75.72 Aligned_cols=115 Identities=9% Similarity=-0.064 Sum_probs=90.5
Q ss_pred HHHHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC--------Ch
Q 019054 212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--------DL 280 (347)
Q Consensus 212 a~~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--------~~ 280 (347)
|..++-.|..++. .+++..|+.+|++|++ ++|.++.++..++.+|.... +.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~------------------ldP~~a~a~A~la~~~~~~~~~~~~~~~~l 400 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK------------------SEPDFTYAQAEKALADIVRHSQQPLDEKQL 400 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 3445556655543 4568899999999999 99999999999999887653 23
Q ss_pred HHHHHHHHHHhhc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 281 KGALLDTEFAMRD--GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 281 ~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
..+.....+++.+ +|..+.+|.-+|..+...|++++|...+++|+.++| +...+..++.+....
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~ 466 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELK 466 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 4556666676664 777889999999999999999999999999999999 567777777665543
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.12 E-value=5.7e-06 Score=52.06 Aligned_cols=42 Identities=17% Similarity=0.021 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 306 (347)
.++..+|.+|..+|++++|+..++++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468899999999999999999999999999999999999885
No 179
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.12 E-value=0.00013 Score=55.14 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=80.2
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh----
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM---- 291 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al---- 291 (347)
...|...+..|-|++|...|.+|+....++.. ++.-..+-.++-++..|+.++..+|+|++++...+++|
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~------eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPA------EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T------TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh------HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 44555666788999999999999997655422 33333556677889999999999999999999999998
Q ss_pred ---hcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 292 ---RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 292 ---~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+++.+. ..+.+.+|.++..+|+.++|+..|+.+-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455554 457788999999999999999999988764
No 180
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.11 E-value=6.3e-05 Score=60.69 Aligned_cols=113 Identities=16% Similarity=0.052 Sum_probs=84.5
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhcccc--CC-CC-hhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK--EG-ID-EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~--~~-~~-~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
+...|......++...++..+.+++.+..--... .. .+ ......+......++..++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3344555556678899999999999876421111 11 11 12234567778888999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+.++|.+..+|..+-.+|...|++.+|++.|+++.+.
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988554
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.4e-05 Score=67.39 Aligned_cols=99 Identities=20% Similarity=0.178 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 307 (347)
.+..+...+..|+ .+|.+..-|.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.+
T Consensus 138 ~~~l~a~Le~~L~------------------~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aea 199 (287)
T COG4235 138 MEALIARLETHLQ------------------QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEA 199 (287)
T ss_pred HHHHHHHHHHHHH------------------hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455566666666 8999999999999999999999999999999999999999999999999
Q ss_pred HHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 308 YMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 308 ~~~~~---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
++... .-.+|...++++++++|.|..++..|+...-.
T Consensus 200 L~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe 239 (287)
T COG4235 200 LYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE 239 (287)
T ss_pred HHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 88765 45689999999999999999999988876543
No 182
>PRK15331 chaperone protein SicA; Provisional
Probab=98.09 E-value=6.6e-05 Score=60.78 Aligned_cols=88 Identities=11% Similarity=-0.076 Sum_probs=79.0
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
+.+......+..|.-++..|++++|...|+-....+|.+.+-++.+|.++..+++|++|+..|..|..++++|+......
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 55566677888899999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
+.|.-.++
T Consensus 112 gqC~l~l~ 119 (165)
T PRK15331 112 GQCQLLMR 119 (165)
T ss_pred HHHHHHhC
Confidence 77765543
No 183
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=1.2e-05 Score=78.03 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
.++.+...+|......++|+++..+++..++++|-....||.+|.+..+++++..|..+|.++..++|++.+.++++..+
T Consensus 483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 34445555666666689999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHh
Q 019054 342 KKKV 345 (347)
Q Consensus 342 ~~~~ 345 (347)
.-++
T Consensus 563 yi~~ 566 (777)
T KOG1128|consen 563 YIRL 566 (777)
T ss_pred HHHH
Confidence 6543
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.05 E-value=2.4e-05 Score=70.63 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=79.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-CChHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEF 289 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~A~~~~~~ 289 (347)
.+..+.+.++. +++.++++|+.+|++|+++.... .....-+.++.++|.+|... +++++|+.+|++
T Consensus 74 Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~------------G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~ 140 (282)
T PF14938_consen 74 AAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREA------------GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQK 140 (282)
T ss_dssp HHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHC------------T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455554544 45558999999999999866433 23345578899999999998 999999999999
Q ss_pred HhhcCCC--C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 290 AMRDGDD--N----VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 290 al~~~p~--~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
|+.+... . ..++...|.++..+++|++|+..|++.....-
T Consensus 141 A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 141 AAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 9977422 1 57888999999999999999999999988643
No 185
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=4.9e-05 Score=70.15 Aligned_cols=113 Identities=13% Similarity=0.026 Sum_probs=99.5
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
...++++++|..+-..|+.++|+.+|-+.-. .-..++..+..+|.+|-.+.+...|++++.+
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~------------------il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHA------------------ILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHH------------------HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 3467899999999999999999999988877 5556788899999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
+..+-|+++..+..+|..|-+.|+-.+|.+++-...+..|.+-+...+|+.
T Consensus 584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 999999999999999999999999888888888888888888777766654
No 186
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.03 E-value=3e-05 Score=78.87 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=98.9
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..-.+++.+|.+|-+.|++++|...|+++|+ .+|.++.+++|+|..|... +.++|+.++.+
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~------------------~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVK------------------ADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 3446889999999999999999999999999 8899999999999999999 99999999999
Q ss_pred Hhh--------------------cCCCChhH--------HHHHH------------HHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 290 AMR--------------------DGDDNVKA--------LFRQG------------QAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 290 al~--------------------~~p~~~~a--------~~~~g------------~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
|+. .+|++... .-.++ ..|...++|++++..++.+++++|
T Consensus 175 AV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 175 AIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred HHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 973 34544322 22234 778889999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 019054 330 NDGGIKKELAVAKKK 344 (347)
Q Consensus 330 ~~~~~~~~l~~~~~~ 344 (347)
.|..++..|..+.+.
T Consensus 255 ~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 255 KNNKAREELIRFYKE 269 (906)
T ss_pred cchhhHHHHHHHHHH
Confidence 999999999988763
No 187
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.03 E-value=2.9e-05 Score=70.13 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=48.9
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC--ChHHHHHHHHHHhhcCCCCh
Q 019054 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEFAMRDGDDNV 298 (347)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~A~~~~~~al~~~p~~~ 298 (347)
.+.+.+|++.|...+++.-+ .+++........|.+.+..| ++++|...|++.....+.++
T Consensus 140 i~L~~~R~dlA~k~l~~~~~------------------~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~ 201 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQ------------------IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP 201 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHC------------------CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH
T ss_pred HHHHcCCHHHHHHHHHHHHh------------------cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH
Confidence 55667788888777766544 11111111111222222222 35555555555544444555
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
..+..++.+++.+|+|++|...++++++.+|.+++...++..+
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 5555555555555555555555555555555555555544443
No 188
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.03 E-value=4.2e-05 Score=72.49 Aligned_cols=116 Identities=13% Similarity=0.050 Sum_probs=59.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc-----c-ccCCCCh-------hhhhhHHhhHHHHHHHHHHHHHHc
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC-----W-EKEGIDE-------GKSSSLRKTKSQIFTNSSACKLKL 277 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~-----~-~~~~~~~-------~~~~~~~~~~~~~~~nla~~~~~l 277 (347)
.+......+..+...|+.++|....+++++.-..- . .....+. +.+.+..|.++..+..+|..++..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 45566777888899999999999999998721100 0 0000000 112233444444444555555555
Q ss_pred CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
++|++|..+++++++..|++. .+..++.++..+|+.++|.++|++++.+
T Consensus 342 ~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555555555555555544332 2334445555555555555555554443
No 189
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=7.6e-05 Score=69.83 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 019054 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (347)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~ 304 (347)
.++|+.|+..+++... .+| .+..-+|.+++..++..+|+....++|...|.++..+...
T Consensus 182 t~~~~~ai~lle~L~~------------------~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q 240 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRE------------------RDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ 240 (395)
T ss_pred cccHHHHHHHHHHHHh------------------cCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4578999999988776 333 3555689999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 305 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+..+...++++.|+...++|.++.|++...+..|+++.-.++
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999887654
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.02 E-value=0.00011 Score=63.00 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=89.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-----------C
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----------D 279 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----------~ 279 (347)
...+...+|..+++.|+|.+|+..|++.++..+ ..+....+++.+|.+++++. .
T Consensus 41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP---------------~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~ 105 (203)
T PF13525_consen 41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP---------------NSPKADYALYMLGLSYYKQIPGILRSDRDQTS 105 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T---------------T-TTHHHHHHHHHHHHHHHHHHHH-TT---HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CCcchhhHHHHHHHHHHHhCccchhcccChHH
Confidence 356778899999999999999999999999544 34456678889999987753 2
Q ss_pred hHHHHHHHHHHhhcCCCCh-----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 280 LKGALLDTEFAMRDGDDNV-----------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 280 ~~~A~~~~~~al~~~p~~~-----------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
..+|+..++..+...|++. +--+..|.-|...|.|..|+.-++.+++-.|+.+.....|..+
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 4589999999999999983 1234468889999999999999999999999977665554443
No 191
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.00 E-value=9.4e-06 Score=72.38 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 336 (347)
+-..|.-|+++|+|++||.+|.+++.++|.|+-.+.+||.+|+.+++|..|..++..|+.|+-....+..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999854333333
No 192
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.00 E-value=2.8e-05 Score=50.67 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
.++|.+|.+++.+|+|++|.+..+.+++++|+|.++......+++++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 467888899999999999999999999999999988888888877764
No 193
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.99 E-value=3.4e-05 Score=74.01 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=99.7
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
.+.+--.|-.+...|+-++|..+-..+++ .++....+|.-+|.++..-++|++|+.+|+.|+
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLR------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhc------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34455678888889999999999999998 788888899999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
.++|+|...|.-++....++++|+.....-.+.+++.|.....+..++.....+
T Consensus 103 ~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 103 KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988899999998888777766665443
No 194
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.98 E-value=5.5e-05 Score=58.40 Aligned_cols=64 Identities=25% Similarity=0.250 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
+..-|.+....|+.+.|++.|.++|.+.|.++.+|.++++++.-.|+.++|+.++++|+++...
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 4445777888999999999999999999999999999999999999999999999999999754
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=4e-05 Score=70.05 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=79.7
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..++..|..+|..++|..|+.+-+|+|+ .++....++.--|.....+++.++|+-.|+.|.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~------------------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCID------------------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhc------------------cCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 44556667777777788888888788877 677777777777777777777777777777777
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
.+.|..-.+|--+-.+|...|++.||...-..+++.-|.+......+
T Consensus 362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 77777777777777777777777777777777777666666655554
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.96 E-value=6.5e-05 Score=59.44 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
...+++.|...++.|+|.+|+..++.+....|-. .++.+.++.+|+..++|++|+..+++-++|+|.++.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 4568889999999999999999999999988865 6899999999999999999999999999999998763
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.96 E-value=2.6e-05 Score=71.22 Aligned_cols=105 Identities=18% Similarity=0.324 Sum_probs=84.5
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
-.++-++||.||-.|+|+.|+..-+.-|++..+. ......-.++.|+|.||.-+|+++.|+++|..++
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef------------GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF------------GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHh------------hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 3456789999999999999999998888865543 1222344689999999999999999999999876
Q ss_pred hc----CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 292 RD----GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 292 ~~----~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
.+ ... .++..|-+|..|.-+.+++.|+.++++-+.+.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 322 36678899999999999999999998877664
No 198
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.94 E-value=2e-05 Score=46.26 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
+.+++.+|.+++++|++++|+.+++++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999999975
No 199
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.92 E-value=3e-05 Score=77.66 Aligned_cols=80 Identities=21% Similarity=0.217 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
.|..+|..|.+.+++..|+.+++.|++.+|.+..+|.-+|.+|...|+|..|++.|.+|..++|.+...+...+.++..+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 35557888888888888888888888888888888888888888888888888888888888888777666665555443
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.87 E-value=0.0001 Score=64.78 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 335 (347)
....++..|.-+++.|+|++|+..+++++...|... .+.+.+|.+|+.+++|++|+..|++.++++|+++.+-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 455577889999999999999999999999999885 4569999999999999999999999999999877643
No 201
>PRK10941 hypothetical protein; Provisional
Probab=97.86 E-value=0.00024 Score=63.13 Aligned_cols=83 Identities=13% Similarity=0.084 Sum_probs=73.2
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
........+.|+=.+|++.++++.|+...+..+.++|+++.-+.-||.+|.+++.+..|..+++..++..|+++.+..-.
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34455667889999999999999999999999999999999999999999999999999999999999999988755444
Q ss_pred HHH
Q 019054 339 AVA 341 (347)
Q Consensus 339 ~~~ 341 (347)
..+
T Consensus 256 ~ql 258 (269)
T PRK10941 256 AQI 258 (269)
T ss_pred HHH
Confidence 333
No 202
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.84 E-value=0.0002 Score=62.07 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=95.1
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+.+.|...++.|+|.+|+.+|++.....+ ..|....+...++.++++.++|+.|+...++-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p---------------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHP---------------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 467789999999999999999999999887333 44556678899999999999999999999999
Q ss_pred hhcCCCCh---hHHHHHHHHHHhcCC--------HHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH
Q 019054 291 MRDGDDNV---KALFRQGQAYMALND--------VDAAVESFEKALKLEPNDGG---IKKELAVAKKK 344 (347)
Q Consensus 291 l~~~p~~~---~a~~~~g~~~~~~~~--------~~~A~~~~~~al~l~P~~~~---~~~~l~~~~~~ 344 (347)
+++.|.+. -++|.+|.++...=+ -.+|...|+..++.-|+.+- +...+..++..
T Consensus 98 i~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~ 165 (254)
T COG4105 98 IRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA 165 (254)
T ss_pred HHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 99999874 578888998776422 34688899999999998664 44444444433
No 203
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.82 E-value=0.00017 Score=70.01 Aligned_cols=78 Identities=19% Similarity=0.127 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
.-+++.+|+.|..+|++++|+.+.++||+..|+.++.|+..|.+|...|++.+|.+.++.|.++++.|.-+.......
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999988877665543
No 204
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.81 E-value=0.00011 Score=70.68 Aligned_cols=81 Identities=22% Similarity=0.180 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
.+|+..+.....+++.++|+..|+++|+..|+..|.|..+|+++.++++.+.|.+.|...++..|+...++..|+.++.+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 55777777777788888888888888888888888888888888888888888888888888888888888888887765
Q ss_pred h
Q 019054 345 V 345 (347)
Q Consensus 345 ~ 345 (347)
.
T Consensus 732 ~ 732 (913)
T KOG0495|consen 732 D 732 (913)
T ss_pred h
Confidence 4
No 205
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.80 E-value=9.3e-05 Score=74.26 Aligned_cols=109 Identities=12% Similarity=0.009 Sum_probs=98.2
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+...|-.+.+.+++..|+..++.|++ .+|.+..+|..+|.+|...|.|..|+..+++|..++
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR------------------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALR------------------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhc------------------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 45589999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
|.+.-+.|..+.....+|+|.+|+..+...+.-..........++++
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999998887765555555555444
No 206
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=9.7e-05 Score=61.31 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=68.0
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
+..-+.+.|.++.+.+.++.|+....+||. +.|.+..++..+|.+|-++..|++|+.+|.++
T Consensus 133 rsIly~Nraaa~iKl~k~e~aI~dcsKaie------------------l~pty~kAl~RRAeayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLRKWESAIEDCSKAIE------------------LNPTYEKALERRAEAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHhhHh------------------cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455678889999999999999999999999 89999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHH
Q 019054 291 MRDGDDNVKALFRQ 304 (347)
Q Consensus 291 l~~~p~~~~a~~~~ 304 (347)
++++|..-.+--..
T Consensus 195 ~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 195 LESDPSRREAREAI 208 (271)
T ss_pred HHhCcchHHHHHHH
Confidence 99999876554333
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.00028 Score=61.64 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAV 340 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~l~~ 340 (347)
.++.|.-+++.|+|..|...|..-+...|++ +.|+|++|.+++.+|+|++|...|..+.+-.|+++ +....|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7788888999999999999999999999987 68999999999999999999999999999998755 55556666
Q ss_pred HHHHh
Q 019054 341 AKKKV 345 (347)
Q Consensus 341 ~~~~~ 345 (347)
+..++
T Consensus 224 ~~~~l 228 (262)
T COG1729 224 SLGRL 228 (262)
T ss_pred HHHHh
Confidence 55544
No 208
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.76 E-value=0.00012 Score=66.05 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 019054 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (347)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 306 (347)
.+.+|.-.|+.... .-+..+.+++.+|.|++.+|+|++|...+.+|+..+|.++.++.++..
T Consensus 182 ~~~~A~y~f~El~~------------------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 182 KYQDAFYIFEELSD------------------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp CCCHHHHHHHHHHC------------------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh------------------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 57788888877544 223456778899999999999999999999999999999999999999
Q ss_pred HHHhcCCH-HHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 307 AYMALNDV-DAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 307 ~~~~~~~~-~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
+...+|+. +.+.+.+.+....+|+++-+...-
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999998 667788888888999988766544
No 209
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.75 E-value=0.00054 Score=62.94 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=88.2
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
......|...|+++.|..|.-.|..||++.......................-+...+..||+++++.+-|+.+..+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 34455677788899999999999999987765332222222222224444445677899999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
++|.+...+.++|.++..+.+|.+|.+.+--|.-
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887655543
No 210
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.71 E-value=6.5e-05 Score=44.13 Aligned_cols=32 Identities=44% Similarity=0.760 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
++|+.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777777777777777777777763
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.70 E-value=0.00016 Score=66.27 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=86.6
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
-.++.++||.+.-.|+|+.|+++|.+++.++.++. ....-+...+.+|..|.-++++++||.+.++-|
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg------------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG------------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc------------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999998765441 223345667889999999999999999999876
Q ss_pred hcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 292 RDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 292 ~~~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
.+.. ....+++-+|.+|-.+|..++|+...++.+++.
T Consensus 303 aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 303 AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5532 237899999999999999999999888877764
No 212
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.62 E-value=0.00019 Score=70.67 Aligned_cols=127 Identities=24% Similarity=0.410 Sum_probs=108.3
Q ss_pred chhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc--CCh
Q 019054 203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL 280 (347)
Q Consensus 203 ~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~ 280 (347)
++....+..+..++..||.+|.+++|..|...|..++.+.+. ..........|.+.||+.+ ++|
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--------------~~~~~a~~~~~~~s~~m~~~l~~~ 109 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--------------DHHVVATLRSNQASCYMQLGLGEY 109 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccc--------------cchhhhhHHHHHHHHHhhcCccch
Confidence 456667778999999999999999999999999999885431 3456677888999888865 789
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
.+++..|+-|+...|...+++..++.+|..++.++-|++++.-....+|.+..+..-+.+++.
T Consensus 110 ~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ 172 (748)
T KOG4151|consen 110 PKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG 172 (748)
T ss_pred hhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998889999999766664444443
No 213
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=9.1e-05 Score=66.55 Aligned_cols=109 Identities=18% Similarity=0.226 Sum_probs=73.7
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh------
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM------ 291 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al------ 291 (347)
+|-.+|..|+|++|+..|+-+.. .+.-...++.|+|.|++-+|.|.+|.....+|-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~------------------~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~ 124 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMN------------------KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCI 124 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhc------------------cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHH
Confidence 57788999999999999998876 344455677888888888888888766555442
Q ss_pred --------hcCC------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 292 --------RDGD------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 292 --------~~~p------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+++. +..+-..-+|.++++.-.|.+|++.|++.+.-+|.-..+...++.|.-+
T Consensus 125 RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK 197 (557)
T KOG3785|consen 125 RLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK 197 (557)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh
Confidence 1110 1122334456666666777778888877777777666666666655443
No 214
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.55 E-value=0.00079 Score=65.12 Aligned_cols=112 Identities=10% Similarity=-0.010 Sum_probs=94.5
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+...++...-.+..++|++.++.+|+ .-|....+|+.+|+++-.+++.+.|...|..-++..
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk------------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALK------------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHH------------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 34444455556777888888888888 677888999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
|.+...|..++.+-...|+.-.|...++++...+|.+...+-+.-+++.+
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR 765 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877766655544
No 215
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.54 E-value=0.00032 Score=59.07 Aligned_cols=78 Identities=21% Similarity=0.154 Sum_probs=71.5
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 337 (347)
+...+.+++.+|..|-.+|-+.-|..++++++.+.|+-+.++..+|.-+...|+|+.|.+.|...++++|...-+..+
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 445677899999999999999999999999999999999999999999999999999999999999999987665543
No 216
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0008 Score=64.80 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=90.3
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+.+.|..+|+..+|..+++.|...++++.. ...+...+....+++.||+++.+.++|.+++++|=+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~------------D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS------------DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccc------------hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 4688899999999999999999999996542 1245566889999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
+|.++-..+..-.+...-+.-++|+.+..+.....
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 99999999999999999999999999987766543
No 217
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00018 Score=61.24 Aligned_cols=73 Identities=14% Similarity=-0.011 Sum_probs=65.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
-|.+++.-+.|..|+..|.+||.++|..+..|-+++.+|+++.+|+.+..+..+|++++|+..-....|+...
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 4667778899999999999999999999999999999999999999999999999999998777776666553
No 218
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.50 E-value=8.4e-05 Score=43.80 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHH
Q 019054 234 KYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (347)
Q Consensus 234 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~ 285 (347)
.|++||+ ++|.++.+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie------------------~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE------------------LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHH------------------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999 999999999999999999999999963
No 219
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.49 E-value=0.0058 Score=52.55 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=76.7
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH-------HHHHHHHHH
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK-------GALLDTEFA 290 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~-------~A~~~~~~a 290 (347)
.+..+-....+++|++.|.-|+-..... .......+.+++.+|.+|..+++.+ .|+..|.+|
T Consensus 83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~-----------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a 151 (214)
T PF09986_consen 83 KPRDFSGERTLEEAIESYKLALLCAQIK-----------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEA 151 (214)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 4446777889999999999998743221 1122356788999999999999944 555555555
Q ss_pred hhcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054 291 MRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 291 l~~~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 332 (347)
++... +....+|.+|.++..+|++++|++.|.+.+..--.+.
T Consensus 152 ~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 152 YENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 54432 2267899999999999999999999999998644333
No 220
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.48 E-value=0.00017 Score=42.24 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
.+|+.+|.+|.++|++++|+.+++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999854
No 221
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.45 E-value=0.0034 Score=48.88 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHcCC---hHHHHHHHHHHhh-cCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054 263 KSQIFTNSSACKLKLGD---LKGALLDTEFAMR-DGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~---~~~A~~~~~~al~-~~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 337 (347)
.....+|+|.++.+..+ .++.+..++..++ -.|+ .-.++|.++..++.+++|+.|+.+....++.+|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 44567888888887654 6677888888886 4554 36789999999999999999999999999999999999998
Q ss_pred HHHHHHHhc
Q 019054 338 LAVAKKKVS 346 (347)
Q Consensus 338 l~~~~~~~~ 346 (347)
-..+++++.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 888888764
No 222
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0035 Score=53.52 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=82.8
Q ss_pred HHHHHHcCccccch-hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 212 a~~~~~~g~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
|..+..+|..|-.. .++++||.+|++|-++..- ......--.++...|.....+++|.+|+..|+++
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~------------ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG------------EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677666544 8999999999999986531 1133344467888888888999999999999999
Q ss_pred hhcCCCC------hhH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 291 MRDGDDN------VKA-LFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 291 l~~~p~~------~~a-~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
.+..-+| +|- ++.-|.|++...+.-.|...+++..+++|.
T Consensus 181 a~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 181 ARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 8766555 344 455688999989999999999999999996
No 223
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00045 Score=60.87 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=79.0
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.|..+.+.|-.+|+.|+|++|++.|+.|++ .....+-+-+|+|.|+++.++|..|+.+..+.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlq------------------vsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQ------------------VSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHh------------------hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 466778899999999999999999999999 66667778899999999999999999999998
Q ss_pred hhc----CCCC-------------------------hhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054 291 MRD----GDDN-------------------------VKALFRQGQAYMALNDVDAAVESFE 322 (347)
Q Consensus 291 l~~----~p~~-------------------------~~a~~~~g~~~~~~~~~~~A~~~~~ 322 (347)
++. .|.- .+|+...+-++++.++++.|.+.+.
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 843 2221 3577778888999999999887653
No 224
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.003 Score=52.43 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=80.9
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+......+..++..+++++|+..+..++.... .......+-.++|.+...+|++++|+..++..-
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~---------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK---------------DENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccch---------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 34557788888999999999999999997321 444566778899999999999999998766544
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
.-.- .+..--.+|.++...|+-++|...|+++++.++
T Consensus 154 ~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 154 EESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred cccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 3211 123356789999999999999999999999984
No 225
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.37 E-value=0.00076 Score=43.97 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 307 (347)
++++.+|..+.++|+|.+|..+++.+|+++|+|.++......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3678899999999999999999999999999998886655443
No 226
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0029 Score=60.55 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=85.9
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhh------------ccccCCCChhhh-hhHHhhHHHHHHHHHHHHHHcCCh
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDI------------CWEKEGIDEGKS-SSLRKTKSQIFTNSSACKLKLGDL 280 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~------------~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~l~~~ 280 (347)
.+.-.|..+|+.++|++|+..|+..++.-.. +.......-.+. ..........++|.|..+...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 4455788999999999999999988662110 000000000000 001123557899999999999999
Q ss_pred HHHHHHHHHHhhcC-------CCC--------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054 281 KGALLDTEFAMRDG-------DDN--------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 281 ~~A~~~~~~al~~~-------p~~--------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 335 (347)
.+|++.+++|+++. ..+ .-+...++.++..+|+-++|...|...++.+|.|....
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~ 261 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSL 261 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHH
Confidence 99999999995331 111 24667789999999999999999999999999877543
No 227
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.30 E-value=0.00093 Score=63.82 Aligned_cols=108 Identities=20% Similarity=0.206 Sum_probs=92.8
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh-HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 296 (347)
.|--+...|+...|+.++..|+. +.|. ...-..|+|.+.++-+....|-..+.++|.+.-.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~------------------~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s 674 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALN------------------LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS 674 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhc------------------cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc
Confidence 34444468999999999999998 3332 2244789999999999999999999999999988
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 297 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
.+-.+|-+|.+|..+.+.+.|++.|+.|++++|+++++...|..+.-
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88999999999999999999999999999999999999988877643
No 228
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.30 E-value=0.0056 Score=56.06 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=99.3
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+......|..-+-.|+|.+|.....++-+ ..+.-..+|.--|.+...+|+++.|-.+..+
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae------------------~~e~p~l~~l~aA~AA~qrgd~~~an~yL~e 143 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAE------------------HGEQPVLAYLLAAEAAQQRGDEDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh------------------cCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3566677778888889999999999988776 5566667788888889999999999999999
Q ss_pred HhhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 290 AMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 290 al~~~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
|-+..++ +......++......++++.|.....++++..|.++++.....++...++
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g 201 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG 201 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc
Confidence 9998554 46678889999999999999999999999999999998887777665543
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.26 E-value=0.00063 Score=61.44 Aligned_cols=103 Identities=24% Similarity=0.228 Sum_probs=84.2
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+..+|+++.-.+.|+++++.|++|++++.... ..-.-..++..+|..|..++++++|+-+..+|.++
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~------------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNND------------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC------------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 445689999999999999999999999765320 11123457899999999999999999999999876
Q ss_pred CCC----C------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 294 GDD----N------VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 294 ~p~----~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
-.+ + .-++|+++.++..+|+.-.|.++.++|.++.
T Consensus 192 v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 192 VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 432 1 3478899999999999999999999998875
No 230
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00064 Score=62.70 Aligned_cols=146 Identities=23% Similarity=0.250 Sum_probs=110.4
Q ss_pred eeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCC--cccCC---CC
Q 019054 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE--SIYGL---KF 91 (347)
Q Consensus 17 ~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~--~~~~~---~~ 91 (347)
.--|.|+++.+-.|.-++-|...|.-. |+++..|.+|+..+++|.||.......+|. .+.+. +|
T Consensus 111 ~s~IAVs~~~sg~i~VvD~~~d~~q~~-----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 111 ISLIAVSLFKSGKIFVVDGFGDFCQDG-----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred eeeEEeecccCCCcEEECCcCCcCccc-----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 348999999999999999999999876 899999999999999999987544333322 11122 23
Q ss_pred CC--CccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccccceEecc
Q 019054 92 ED--ENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169 (347)
Q Consensus 92 ~~--e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~~ 169 (347)
++ .++.++|.. -+......-..-.+-+|+++-...+.+..+-.|+|.+..+-++++.|....++....|..++.|..
T Consensus 180 Pr~~l~~~~K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~ 258 (558)
T KOG0882|consen 180 PRTNLNFELKHET-DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH 258 (558)
T ss_pred ccccccccccccc-hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence 33 355666653 344343333333466788887777888889999999999999999999999998888999888887
Q ss_pred ceecC
Q 019054 170 CGEIP 174 (347)
Q Consensus 170 ~g~~~ 174 (347)
....+
T Consensus 259 VelgR 263 (558)
T KOG0882|consen 259 VELGR 263 (558)
T ss_pred eehhh
Confidence 76553
No 231
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.24 E-value=0.0015 Score=63.56 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=87.2
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+.-++..+-..|+|++|+++..+||. ..|..+.+|+..|.++-++|++.+|....+.|-.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 456667777789999999999999999 88999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
|+.+--.....+..+.+.|+.++|.+.+..--+-+
T Consensus 258 D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 258 DLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99988888888999999999999999887665443
No 232
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.23 E-value=0.00058 Score=39.52 Aligned_cols=31 Identities=39% Similarity=0.702 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 300 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
|++++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666554
No 233
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.00082 Score=60.56 Aligned_cols=85 Identities=21% Similarity=0.211 Sum_probs=67.9
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHH
Q 019054 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301 (347)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~ 301 (347)
+..+++|..|+...+-.+. .++|+. .....-+|.|++.+|+|++|+..|+.+...+..+++.+
T Consensus 32 fls~rDytGAislLefk~~----------~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~ 94 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLN----------LDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELG 94 (557)
T ss_pred HHhcccchhHHHHHHHhhc----------cchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccc
Confidence 4456889999988876664 222221 23445589999999999999999999999888889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 019054 302 FRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 302 ~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
.++|.+++-+|.|.+|...-.+
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999876544
No 234
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.00056 Score=63.95 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhh---------cCC---------CChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMR---------DGD---------DNVKALFRQGQAYMALNDVDAAVESFEKA 324 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~---------~~p---------~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 324 (347)
....|+|+|.++++++.|.-++.+|.+||+ +.| .+...+|+.|..|...|+.-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 456689999999999999999999999995 111 23578999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHH
Q 019054 325 LKLEPNDGGIKKELAVA 341 (347)
Q Consensus 325 l~l~P~~~~~~~~l~~~ 341 (347)
.+..-.+|.+|-.|+++
T Consensus 362 v~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHhcCcHHHHHHHHH
Confidence 99999999999998876
No 235
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.18 E-value=0.0015 Score=57.84 Aligned_cols=74 Identities=23% Similarity=0.219 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
+-.+.|.-..+.|+.++|...+..|+.++|++++++...|+...+-++.-+|-.+|-+|+.++|.+.++..+..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 33445555668899999999999999999999999999999999999999999999999999999998876544
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.18 E-value=0.0027 Score=55.09 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
-+.-+++-|...+..|+|.+|+..++.+....|.+ .++..-++.+++..++|++|+...++.+++.|.++.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 45568888999999999999999999999988865 6899999999999999999999999999999987764
No 237
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0039 Score=54.16 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=87.2
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
-...+|...++.|+-+.|..++++.-+-...+ +--........|.+.+|.-.++|.+|...+++.+..
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh------------hccchhHHHHhhhhhheecccchHHHHHHHhhcccc
Confidence 34556667777777777777776443311100 112234566788999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKELAV 340 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~---~~~~~~~l~~ 340 (347)
||.++.+..+.|.|++-+|+...|++..+.+++..|. +..+..+|..
T Consensus 282 D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~t 331 (366)
T KOG2796|consen 282 DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTT 331 (366)
T ss_pred CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHH
Confidence 9999999999999999999999999999999999996 3334444443
No 238
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.13 E-value=0.00043 Score=41.31 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054 301 LFRQGQAYMALNDVDAAVESFEKAL 325 (347)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~al 325 (347)
|.++|.+|..+|+|++|+..|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.12 E-value=0.0029 Score=61.22 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=86.0
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
++.+.-+...|..+..+|+.++|++.|++++.. .....+....+++.+|.|++-+.+|++|..++.
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~--------------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIES--------------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccc--------------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 334666788899999999999999999999861 122556677889999999999999999999999
Q ss_pred HHhhcCCCC-hhHHHHHHHHHHhcCCH-------HHHHHHHHHHHhhCC
Q 019054 289 FAMRDGDDN-VKALFRQGQAYMALNDV-------DAAVESFEKALKLEP 329 (347)
Q Consensus 289 ~al~~~p~~-~~a~~~~g~~~~~~~~~-------~~A~~~~~~al~l~P 329 (347)
+.++.+.-+ +-..|..|.++.++++. ++|.+.|.++-.+-.
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999876432 33456679999999999 888888888776643
No 240
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.11 E-value=0.00078 Score=38.94 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
.+++++|.|+.++|++++|+..++++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 368899999999999999999999999999975
No 241
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.10 E-value=0.0079 Score=50.33 Aligned_cols=67 Identities=34% Similarity=0.381 Sum_probs=38.1
Q ss_pred HHHHcCChHHHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Q 019054 273 CKLKLGDLKGALLDTEFAMRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELA 339 (347)
Q Consensus 273 ~~~~l~~~~~A~~~~~~al~~~p---~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~l~ 339 (347)
++...+++++|+..+.+++...| .....++.++..+...+++++|+..+.++++..|. .......+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLG 209 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhh
Confidence 56666666666666666665554 23445555555555666666666666666666665 334333333
No 242
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.08 E-value=0.00045 Score=41.22 Aligned_cols=29 Identities=21% Similarity=0.105 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+|.++|.+|.++|+|++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999977553
No 243
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0047 Score=54.63 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=82.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHH
Q 019054 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (347)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~ 302 (347)
.+..+|.+||+....-.+ ..|.....+..+|.||....+|..|..+|++...+.|...+.-+
T Consensus 21 I~d~ry~DaI~~l~s~~E------------------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELE------------------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred HHHhhHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 466788888888877776 56666677888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 303 RQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 303 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
..++.++..+.|..|++...... +++..+...-+++..+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAI 121 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLL----DNPALHSRVLQLQAAI 121 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhc----CCHHHHHHHHHHHHHH
Confidence 99999999999999998765433 3456666555555443
No 244
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.012 Score=51.31 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
+++..|.-.|++.-...|..+..+.-++.|.+.+++|++|...++.|+..++++++...++-.+-.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL 252 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 447788888888887777788888888888888888888888888888888888888777766543
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.013 Score=51.98 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=91.3
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH----
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF---- 289 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~---- 289 (347)
.....+..+...+++.+|...+..++. ..+.+..+...++.||...|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~------------------~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQ------------------AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHH------------------hCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 346667788899999999999999999 7777788899999999999999776554433
Q ss_pred ------------------------------HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 019054 290 ------------------------------AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKE 337 (347)
Q Consensus 290 ------------------------------al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~~ 337 (347)
.+..+|++..+-+.+|..|...|+.++|++.+-..++.+-. |..+++.
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 12558999999999999999999999999999888888653 5667766
Q ss_pred HHHHHHH
Q 019054 338 LAVAKKK 344 (347)
Q Consensus 338 l~~~~~~ 344 (347)
|-.+...
T Consensus 278 lle~f~~ 284 (304)
T COG3118 278 LLELFEA 284 (304)
T ss_pred HHHHHHh
Confidence 6655443
No 246
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.96 E-value=0.0037 Score=63.84 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
...|..+..++...|+++.|...+++++.+.|++...|..+..+|...|++++|.+.+++..+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3568888888889999999999999999999999999999999999999999999999887755
No 247
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0047 Score=55.32 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
.+.-|-.-|.-|++.++|..|+..|++.|+..-.+ +-.|.+||-|...+|+|..|+.++.++++++|.+..+...=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 44556677899999999999999999999876443 66799999999999999999999999999999877654443
Q ss_pred HHH
Q 019054 339 AVA 341 (347)
Q Consensus 339 ~~~ 341 (347)
++|
T Consensus 160 Akc 162 (390)
T KOG0551|consen 160 AKC 162 (390)
T ss_pred hHH
Confidence 333
No 248
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.95 E-value=0.0015 Score=36.69 Aligned_cols=30 Identities=53% Similarity=0.916 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 300 ALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 300 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
+++++|.++..++++++|+..|+++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 445555555555555555555555555544
No 249
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.93 E-value=0.004 Score=51.14 Aligned_cols=65 Identities=26% Similarity=0.283 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV----------DAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~----------~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
|+.|.+.++.....+|.++.++++-|.++..+.++ ++|+.-|++|+.++|+..++...++.+.-.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 78899999999999999999999999999887554 568888999999999999999988877644
No 250
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.011 Score=51.88 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=69.6
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 335 (347)
.......+..|+=..++..++++.|....++.+.++|.++.-+.-+|.+|.++|.+.-|+.+++..++..|+++.+.
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 44455667788888999999999999999999999999999999999999999999999999999999999987643
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.90 E-value=0.012 Score=49.09 Aligned_cols=64 Identities=33% Similarity=0.443 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
+..++..+...++++.|+..+.+++...+. ....+..++.++...+++++|+..+.+++...|.
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 333333344445555555555555555544 3455555555555555555555555555555443
No 252
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.0099 Score=57.08 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHH
Q 019054 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG--IKKELAV 340 (347)
Q Consensus 268 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~l~~ 340 (347)
+..|.|.+++++.++|+..++ -+++.+.+.+..+|+.++.+++|++|+..|+...+-+-++.+ .+.++..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 678999999999999999988 667778899999999999999999999999999887765443 4444433
No 253
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.83 E-value=0.002 Score=36.15 Aligned_cols=33 Identities=33% Similarity=0.301 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
.++.++|.++..++++++|+..++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998853
No 254
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.79 E-value=0.00096 Score=62.48 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 331 (347)
+-+-|.-+++-+.|+.|+..|.+||+++|+++..+-+|+.++...++|..|+.++.+|++++|..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 34456677888999999999999999999999999999999999999999999999999999963
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.75 E-value=0.0068 Score=55.00 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=63.7
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~-----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
.......++.|++..+.++.++.+++.++...+.+.-.. ..++.-+|.++..++.|+++++.|++|++..-++.+
T Consensus 78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 344567899999999999999999999999998775443 478888999999999999999999999998654433
No 256
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.75 E-value=0.011 Score=49.24 Aligned_cols=100 Identities=21% Similarity=0.177 Sum_probs=79.6
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
-..+..+|+.|.+.|++++|++.|.++..+.. .......+++++-.+.+..++|..+..+..+|-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---------------~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCT---------------SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35678899999999999999999999887432 455677889999999999999999999999986
Q ss_pred hcCC--CCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 292 RDGD--DNV----KALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 292 ~~~p--~~~----~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
.+-. .++ +.....|.+++..++|.+|...|-.+..
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 5432 222 3444567888889999999998866643
No 257
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.74 E-value=0.00037 Score=62.46 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=60.5
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+..|.+++|+++|..||.++|..+..|-.++.++..+++...|+++|..|++++|+...-...-..+++.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence 3467799999999999999999999999999999999999999999999999999876644444444443
No 258
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.73 E-value=0.0095 Score=54.58 Aligned_cols=111 Identities=14% Similarity=0.004 Sum_probs=79.7
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhh---------hccccCCCC----hhhhhhHHhhHHHHHHHHHHHHHHcCChHH
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLD---------ICWEKEGID----EGKSSSLRKTKSQIFTNSSACKLKLGDLKG 282 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~---------~~~~~~~~~----~~~~~~~~~~~~~~~~nla~~~~~l~~~~~ 282 (347)
...+.-+...|++++|.+....+++.-- .+...++.. -+.+....|..+.++..+|..|++.+.|.+
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence 3445556677889999988888876321 111111111 133445667777888888999999999999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 283 A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
|-.+++.|+...| +...+..+|.++.++|+.++|.+.+++++.+
T Consensus 347 A~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 347 ASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999998888876 5666777888899999999998888888754
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.66 E-value=0.044 Score=51.97 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHHhhhccccCCCChh---hh----hhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--C
Q 019054 227 DYKMALRKYRKALRYLDICWEKEGIDEG---KS----SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--N 297 (347)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~--~ 297 (347)
-..+|.++|++|++..+........... .. ........-+-..+|.|..++|+.++|++.+...++..|. +
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 4678899999999877654433221111 00 1111223456678999999999999999999999988774 4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHHHHH
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKL-EPNDGGIKKE 337 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-~P~~~~~~~~ 337 (347)
-..++++-.++..++.|.++...+.+.-.+ -|....+...
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 668999999999999999999999887654 2445544433
No 260
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.64 E-value=0.013 Score=52.67 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=77.1
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHhhcCCC
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMRDGDD 296 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al~~~p~ 296 (347)
..+..-+.+..+.|...|.+|+. .......+|...|....+ .++.+.|...|+.+++..|.
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~------------------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~ 68 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARK------------------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------------------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCChHHHHHHHHHHHc------------------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 33444555668888888888876 444556778888888666 46666699999999999998
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHH
Q 019054 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVAK 342 (347)
Q Consensus 297 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~ 342 (347)
+...|.....-+..+++.+.|...|++++..-|.+. .++......+
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE 117 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE 117 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 888888888888889999999999999988877655 3444444333
No 261
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.55 E-value=0.0039 Score=53.02 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=56.5
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 273 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
...+.++.+.|.+.+.+|+++-|.....|+|+|......|+++.|.+.|++.++++|.|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3456789999999999999999999999999999999999999999999999999997654
No 262
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.54 E-value=0.051 Score=45.02 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh-cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAMR-DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al~-~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
-.+.+|....++|++.+|..+|++++. +..+++..+.-++++....+++.+|...+++..+.+|.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 366789999999999999999999986 56788999999999999999999999999999999985
No 263
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.54 E-value=0.017 Score=42.34 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=49.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHh
Q 019054 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKV 345 (347)
Q Consensus 283 A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~ 345 (347)
.+..++++++.+|++..+.+.+|.++...|++++|++.+..+++.+|. +..+++.|-.+-..+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 356678889999999999999999999999999999999999999885 466777776665554
No 264
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.049 Score=47.61 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=62.5
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCHHH
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVES-FEKALKLEPNDGGI 334 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~-~~~al~l~P~~~~~ 334 (347)
-+..+.+++..|.|++.+++|++|....+.||..++.++..+.++-.+-..+|.-.++... +.+....+|.++-+
T Consensus 203 ~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 203 TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 3455677889999999999999999999999999999999999999999999988777655 45555556765543
No 265
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.50 E-value=0.024 Score=57.04 Aligned_cols=91 Identities=22% Similarity=0.163 Sum_probs=79.2
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHH
Q 019054 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301 (347)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~ 301 (347)
....++|.+|+....+.++ ..|....+..--|....++|++++|...++..-...+++...+
T Consensus 19 ~ld~~qfkkal~~~~kllk------------------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL 80 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLK------------------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL 80 (932)
T ss_pred HhhhHHHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH
Confidence 3467899999999999999 7777777788889999999999999966555556677888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 302 FRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 302 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
-.+-.+|..++++++|...|+++.+.+|+
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 88999999999999999999999999998
No 266
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.40 E-value=0.0095 Score=56.03 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=74.0
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhh-hhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKS-SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
.+.++|.++|+.+.|..++.+|.+||+..-...... ...... .-.......+++|.|..|+..|++-.|-+++.+++.
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g-~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG-LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc-CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 358899999999999999999999997322111110 111111 113334567899999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHh
Q 019054 293 DGDDNVKALFRQGQAYMA 310 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~ 310 (347)
..-.++..|.|+|.|-.+
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 999999999999998665
No 267
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.35 E-value=0.023 Score=59.76 Aligned_cols=99 Identities=20% Similarity=0.114 Sum_probs=77.9
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 296 (347)
..|..++..|++++|...++++++..... .......++..+|.++...|++++|+..+.+++.....
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~ 523 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLT-------------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ 523 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCc-------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 35667778999999999999998732110 12223456788999999999999999999999976432
Q ss_pred C------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 297 N------VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 297 ~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
. ..++..+|.++...|++++|...+++++.+.
T Consensus 524 ~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 524 HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1 3567888999999999999999999998873
No 268
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.052 Score=46.53 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=78.1
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al 291 (347)
..+...++ .|++.+..+|+.+++++++++..+ ..-..-+.-+..+|..|-. +.++++||.+|++|-
T Consensus 75 t~YveA~~-cykk~~~~eAv~cL~~aieIyt~~------------Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 75 TTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDM------------GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred HHHHHHHH-HhhccChHHHHHHHHHHHHHHHhh------------hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33344443 346668888999999998865322 0011222334567777765 489999999999997
Q ss_pred hcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054 292 RDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (347)
Q Consensus 292 ~~~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 336 (347)
+... ..-+++...+..-..+++|.+|++.|++.....-++.-...
T Consensus 142 e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 142 EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 6543 23588999999999999999999999999887766665444
No 269
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.27 E-value=0.028 Score=59.10 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=66.9
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
....+|..+...|++++|...+++++....... .......++.++|.++...|++++|...+++++.+
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHD------------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345667777889999999999999987543210 11112335567777777777777777777777654
Q ss_pred CCC--------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 294 GDD--------NVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 294 ~p~--------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
... ....+..+|.++...|++++|...+.+++.+.
T Consensus 561 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 211 12234456677777777777777777776653
No 270
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.24 E-value=0.0067 Score=53.83 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=71.1
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.|......+....+.|+.++|...|+.|+. +.|.++.++..+|...-..++.-+|=.+|-+|
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAla------------------laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALA------------------LAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHh------------------cCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 455556667778899999999999999999 99999999999999998889999999999999
Q ss_pred hhcCCCChhHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQA 307 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~ 307 (347)
|.++|.+.+|+-+++..
T Consensus 177 LtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 177 LTISPGNSEALVNRART 193 (472)
T ss_pred eeeCCCchHHHhhhhcc
Confidence 99999999999998754
No 271
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.23 E-value=0.019 Score=54.15 Aligned_cols=104 Identities=24% Similarity=0.376 Sum_probs=69.9
Q ss_pred eeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCCcc
Q 019054 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF 96 (347)
Q Consensus 17 ~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 96 (347)
.-.+.+||.+. +|.++++|+.+.+.+. + +|-. ..++-.+..+..|...+.||+
T Consensus 200 fTy~evE~~~~-~p~s~EH~la~~~~G~-----------~------~Vd~---------~tsTfi~d~~L~g~~~p~En~ 252 (503)
T TIGR03268 200 FTYVEVELDPN-APVSVEHFLALMEDGT-----------F------RVDY---------RTSTFISDDSLRGLDKPEENI 252 (503)
T ss_pred EEEEEEEEcCC-CChhHHHHHHHHhCCe-----------E------EEee---------eecceEecccccCccCCcccc
Confidence 34788898777 8999999999988762 1 1100 001111222334666777886
Q ss_pred ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhc
Q 019054 97 ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (347)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~ 152 (347)
. .-++|+|.+.|.|.. ....||-..+-+ ..-.|+|+|+|+.||++++-...
T Consensus 253 ~--~R~rGtVTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 253 E--KRRRGAVTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred C--cccceeEEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence 4 345799999999843 456888776644 22469999999999999875443
No 272
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.21 E-value=0.14 Score=40.91 Aligned_cols=79 Identities=23% Similarity=0.232 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCC----------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDN----------------------VKALFRQGQAYMALNDVDAAVESFEKAL 325 (347)
Q Consensus 268 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~----------------------~~a~~~~g~~~~~~~~~~~A~~~~~~al 325 (347)
...|......++...++..+.+++.+.... ..++..++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344555566788899999999998664221 3467778888999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhc
Q 019054 326 KLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 326 ~l~P~~~~~~~~l~~~~~~~~ 346 (347)
.++|.+..+...+-.+....+
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g 110 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQG 110 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT
T ss_pred hcCCCCHHHHHHHHHHHHHCc
Confidence 999999999988887766554
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.11 Score=44.86 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=75.2
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+..-++.+-..++|++|...+.+|++..+ +...--+-+.+|...+....++..+.++..++++|.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yE------------nnrslfhAAKayEqaamLake~~klsEvvdl~eKAs 98 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE------------NNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS 98 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH------------hcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444555566677899999999999986321 111222345667788888888999999999999998
Q ss_pred hcC-----CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054 292 RDG-----DDNV-KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 292 ~~~-----p~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 335 (347)
.+. |+.+ -++-+-|.+ ....+.++|++.|++++.+--.+...+
T Consensus 99 ~lY~E~GspdtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~~ 147 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQ 147 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHH
Confidence 764 3333 334444444 445789999999999988865544433
No 274
>PRK00969 hypothetical protein; Provisional
Probab=96.11 E-value=0.021 Score=54.09 Aligned_cols=104 Identities=26% Similarity=0.400 Sum_probs=70.4
Q ss_pred eeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCCcc
Q 019054 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF 96 (347)
Q Consensus 17 ~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 96 (347)
.-.+.+||.++ +|.++++|+.+.+.+. | +|- ...++-.+..+.-|...+.||+
T Consensus 203 fTy~eve~~~~-~p~s~EH~la~~~~G~-----------f------~Vd---------~~tstfI~d~~L~g~~~p~En~ 255 (508)
T PRK00969 203 FTYVEVELDPG-APKSVEHFLALLEDGT-----------F------EVD---------FETSTFIADDRLQGLKIPEENF 255 (508)
T ss_pred EEEEEEEEcCC-CCchHHHHHHHHhCCe-----------E------EEe---------eeecceEeeccccCccCCcccc
Confidence 34788899887 8999999999998762 1 110 0001111222334667777887
Q ss_pred ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhc
Q 019054 97 ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (347)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~ 152 (347)
.. -++|+|.+.|.|. .....||.-.+-+ -.-.|+|+|+|+.|+++++-...
T Consensus 256 ~~--R~~GtVTVRt~G~--g~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 256 EP--RRRGTVTVRTAGV--GVGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred Cc--cccceEEEEeecc--CceeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 43 4579999999984 3456888876644 22469999999999999875443
No 275
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.057 Score=47.17 Aligned_cols=114 Identities=14% Similarity=0.257 Sum_probs=90.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.-...+.+.+.+.-.+.|.-.+..|.+.+++ ..+..+.+...++.+.++.|+.+.|..+++.+
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----------------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-----------------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-----------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3445566778888899999999999999982 34667778889999999999999999999944
Q ss_pred h----hcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 291 M----RDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 291 l----~~~p--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
- .++. .+.-.+.+.+.+|...++|.+|...|.+++..+|.++.+.+.-+.|
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 3 3333 2345667778888889999999999999999999988876655544
No 276
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.066 Score=50.45 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=91.4
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+...|..--.++++..|...|++||. .+..+..+|...+.+-|+.++...|...+++|+.+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALd------------------vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALD------------------VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHh------------------cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 345556566678889999999999998 77888999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
=|.--+.||..-..-..+|+..-|.+.|++=+++.|+...
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence 9999999999999999999999999999999999996543
No 277
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.06 E-value=0.04 Score=52.13 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCCcccc
Q 019054 19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL 98 (347)
Q Consensus 19 ~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 98 (347)
=|.|+||.+.||.|+..|+++.--.. .. -=-..+|=..++.++.=|+.. ++..+-+||..-
T Consensus 376 vi~IeLydd~AP~s~~yFRk~tGL~~-~~--------VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~ 436 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFTGLKT-KP--------VGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPE 436 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhcCCcc-cc--------cceeEEEEEeCCeeEeccCch----------hccccCCCCCCC
Confidence 57899999999999999999763321 00 011355666677555544332 233356777766
Q ss_pred CCCCccEEEeeeCCCCCCCceEEEe------cCCCC-CCCCCCceeeEEEeChHHHHHHhc
Q 019054 99 KHERKGMLSMANAGPNTNGSQFFIT------TTRTS-HLDGKHVVFGRVIKGMGVVRSIEH 152 (347)
Q Consensus 99 ~~~~~g~~~~~~~~~~~~~sqF~i~------~~~~~-~l~~~~~vfG~v~~g~~vl~~I~~ 152 (347)
....+|.|+|.|......| -.=|- ++|.. .+++ .-++|+|+++++.|+.+..
T Consensus 437 ~~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 437 DKVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKE 495 (503)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-cceEEEecCChhHhccccc
Confidence 6788999999887522111 01111 23332 3444 4567999999999877654
No 278
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.027 Score=48.60 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=65.4
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+.+....+...++|.+++++....|+ ..|.+..+|+.+|.++...-+.++|..++.++|++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~------------------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILR------------------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHh------------------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 356788889999999999999999999 89999999999999999999999999999999999
Q ss_pred CCCChhHHHH
Q 019054 294 GDDNVKALFR 303 (347)
Q Consensus 294 ~p~~~~a~~~ 303 (347)
+|.-..+-.+
T Consensus 294 dpslasvVsr 303 (329)
T KOG0545|consen 294 DPSLASVVSR 303 (329)
T ss_pred ChhhHHHHHH
Confidence 9977665544
No 279
>PLN03077 Protein ECB2; Provisional
Probab=95.99 E-value=0.052 Score=56.87 Aligned_cols=62 Identities=6% Similarity=-0.036 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
..|..+-.++...++.+.|....+++++++|+++..|..++.+|...|+|++|.+..+...+
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 34444444455566666666666777777777777777777777777777777776665543
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.019 Score=51.65 Aligned_cols=95 Identities=11% Similarity=-0.047 Sum_probs=67.3
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
++-.-..+|-.|+-..-...+++.+... ....|...-+.--+|.+....|-|++|....+++++++
T Consensus 140 ~kfsh~a~fy~G~~~~~k~ai~kIip~w--------------n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN 205 (491)
T KOG2610|consen 140 VKFSHDAHFYNGNQIGKKNAIEKIIPKW--------------NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN 205 (491)
T ss_pred hhhhhhHHHhccchhhhhhHHHHhcccc--------------CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC
Confidence 3333344444555555555555555411 11233344455567888999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
+.+..+....+.++.+.+++.++.+...+
T Consensus 206 ~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 206 RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 99999999999999999999998877554
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.95 E-value=0.32 Score=43.67 Aligned_cols=121 Identities=9% Similarity=0.035 Sum_probs=85.7
Q ss_pred hHHHHhhHHHHHHcCccccchh-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (347)
+......+..+++.|..+++++ +|+.|+..+++|+++++..... +............++..++.+|+..+.++..
T Consensus 28 ~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~----~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 28 PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM----DKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc----cccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 3344557889999999999999 9999999999999987542111 1112235567888999999999998886543
Q ss_pred HH---HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 284 LL---DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 284 ~~---~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
.. ..+.+-.-.|+.+..++..=.+....++.+++.+.+.+++.--+
T Consensus 104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 33 33333344566666665555555557888888888888887654
No 282
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.91 E-value=0.032 Score=42.14 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=68.2
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc----CC-------hHHHHHH
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----GD-------LKGALLD 286 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~~-------~~~A~~~ 286 (347)
.+..+|.+|++-+|++..+..+..-.. +.....++..-|.++.++ .+ .-.+++.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~---------------~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~ 66 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE---------------DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVEC 66 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC---------------CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHH
Confidence 355678899999999999999872210 000012233334444332 22 4467899
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
+.++..+.|..+..+|.+|.-+-....|++++.-.++++...
T Consensus 67 ~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 67 FSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999999999999999999998888888999998888888653
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.84 E-value=0.28 Score=46.62 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 307 (347)
...-+..|+.|+. --+.+..+|.+......+.+.+.+.-..|.++|..+|+++..|..-|.-
T Consensus 87 ~~rIv~lyr~at~------------------rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w 148 (568)
T KOG2396|consen 87 PNRIVFLYRRATN------------------RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW 148 (568)
T ss_pred HHHHHHHHHHHHH------------------hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh
Confidence 3444566888877 3344667788887777777779999999999999999999999998887
Q ss_pred HHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 308 YMALND-VDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 308 ~~~~~~-~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
.+..+. .+.|.+.|.++++.+|+++.++.+.
T Consensus 149 efe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 149 EFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred HHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 777765 9999999999999999999987654
No 284
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.77 E-value=0.019 Score=34.84 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.++.|+|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777754
No 285
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.71 E-value=0.049 Score=51.66 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=78.8
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.-+.+|+.+.+.|+.++|++.|+..++..+ ......+..|+-.|++.++.|.++...+.+-=.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p----------------~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFP----------------NLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCC----------------ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 346688888899999999999999988211 1135568999999999999999998887775433
Q ss_pred C-CCChhHHHHHHHHHHh-cCC---------------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 294 G-DDNVKALFRQGQAYMA-LND---------------VDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 294 ~-p~~~~a~~~~g~~~~~-~~~---------------~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
. |.++-..|..|....+ .++ -..|++.+.+|.+.||+-+...-+++
T Consensus 325 ~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K 387 (539)
T PF04184_consen 325 SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMK 387 (539)
T ss_pred cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccC
Confidence 2 4555555555543322 111 23477889999999999887766544
No 286
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.66 E-value=0.15 Score=54.16 Aligned_cols=29 Identities=3% Similarity=-0.150 Sum_probs=16.8
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~ 240 (347)
...+..+-..+.+.|++++|.+.|.+...
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555556666666666666665543
No 287
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.036 Score=50.56 Aligned_cols=107 Identities=25% Similarity=0.417 Sum_probs=70.4
Q ss_pred CeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCC
Q 019054 14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED 93 (347)
Q Consensus 14 ~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~ 93 (347)
..-.-.+.+||.+. +|+++++|++|.+.+. + ||- +..++=.+..+..+.+.+.
T Consensus 199 drifTy~eve~s~n-sP~saEH~lalmedG~-----------l------ri~---------~~tntfis~~~lq~~~~~~ 251 (512)
T COG4070 199 DRIFTYFEVELSRN-SPKSAEHFLALMEDGT-----------L------RID---------VTTNTFISDDTLQEEKVPE 251 (512)
T ss_pred CEEEEEEEEEeCCC-CchhHHHHHHHhhcce-----------E------EEE---------EeccceeeccccccccCCh
Confidence 34456788999887 7999999999987762 1 221 0111111222334667788
Q ss_pred CccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhc
Q 019054 94 ENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (347)
Q Consensus 94 e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~ 152 (347)
||+.++ .+|.++..|.|-. ...-||.-.+-+. .-.|.|+|+|++||++++-...
T Consensus 252 en~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 252 ENFDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhhhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 888764 4699999998843 4567776554321 2358999999999998875443
No 288
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.61 E-value=0.16 Score=54.01 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=15.5
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHH
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKAL 239 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al 239 (347)
.+..+-..+.+.|++++|++.|.+..
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34444455666677777776666554
No 289
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.59 E-value=0.025 Score=33.97 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 299 KALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 299 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.+|.++|.+....++|++|+.+|++|+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56788888988999999999999998876
No 290
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.58 E-value=0.054 Score=38.12 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=53.8
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+....+.|.-+|...+.++|+..++++++... ..+....++--+..+|...|+|.+++.+.-.-
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---------------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT---------------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999999998432 23456667777888899999999999887665
Q ss_pred hhc
Q 019054 291 MRD 293 (347)
Q Consensus 291 l~~ 293 (347)
+.+
T Consensus 70 ~~~ 72 (80)
T PF10579_consen 70 LEI 72 (80)
T ss_pred HHH
Confidence 543
No 291
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.55 E-value=0.021 Score=48.71 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=56.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
..+.+.++.+.|.+.|.+++. +.|....-|+.+|....+.|+++.|...|++.++++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~------------------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALE------------------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhh------------------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345678999999999999999 889999999999999999999999999999999999976
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.53 E-value=0.51 Score=38.29 Aligned_cols=109 Identities=13% Similarity=-0.036 Sum_probs=78.6
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+..........++.+++...+.-.-- +.|....+-.--|..++..|+|.+|+..++.+.+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrv------------------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRV------------------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455555555666677777777654444 7888888889999999999999999999999988
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHH-HHHHhhCCCCHHHHHHHHHHH
Q 019054 293 DGDDNVKALFRQGQAYMALNDVDAAVESF-EKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~-~~al~l~P~~~~~~~~l~~~~ 342 (347)
-.|..+-+--.++.|+..+++.+ .+.+ +.+++-. .++.....++.+.
T Consensus 73 ~~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~~-~d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 73 RAPGFPYAKALLALCLYALGDPS--WRRYADEVLESG-ADPDARALVRALL 120 (160)
T ss_pred cCCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhcC-CChHHHHHHHHHH
Confidence 88888877778888999988863 2222 2344443 3666555555444
No 293
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.16 Score=45.90 Aligned_cols=113 Identities=13% Similarity=-0.035 Sum_probs=88.8
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.....+..++-+|++.+|...+.+.|+ .-|....++...-.+++.+|+...-...+++++..
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~------------------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~ 166 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLD------------------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK 166 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHH------------------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc
Confidence 344556677888999999999999998 66777777777778888999999999999999977
Q ss_pred -CCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 294 -GDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 294 -~p~~~---~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+++-+ -.+--.+..+...|-|++|.+.-+++++++|.|.=+.-.++.+.+.
T Consensus 167 wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem 221 (491)
T KOG2610|consen 167 WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM 221 (491)
T ss_pred cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh
Confidence 66553 3333456678889999999999999999999887666655555443
No 294
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.49 E-value=0.41 Score=42.68 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=65.6
Q ss_pred hHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 258 ~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.+......++..++..+...++++.++...++.+..+|-+.++|.++-.+|+..|+...|+..|++.-++
T Consensus 147 ~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 147 ALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3667788899999999999999999999999999999999999999999999999999999999988774
No 295
>PRK00969 hypothetical protein; Provisional
Probab=95.48 E-value=0.099 Score=49.70 Aligned_cols=112 Identities=19% Similarity=0.289 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCCCcccc
Q 019054 19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL 98 (347)
Q Consensus 19 ~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 98 (347)
=|.|+||.+.||+|+..|+.+.--.... -=-..+|=..++.++.=|+.. ++..+-+||..-
T Consensus 379 vi~IeLydd~AP~s~~yFR~~tGL~~~~---------VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~ 439 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVTGLKTKP---------VGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPE 439 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhcCCcccc---------cceeEEEEEeCCeEEEccChh----------hccccCCCCCCC
Confidence 5789999999999999999986432100 011356666777666544432 233466787777
Q ss_pred CCCCccEEEeeeCCCCCCCceEEEe------cCCCC-CCCCCCceeeEEEeChHHHHHHhc
Q 019054 99 KHERKGMLSMANAGPNTNGSQFFIT------TTRTS-HLDGKHVVFGRVIKGMGVVRSIEH 152 (347)
Q Consensus 99 ~~~~~g~~~~~~~~~~~~~sqF~i~------~~~~~-~l~~~~~vfG~v~~g~~vl~~I~~ 152 (347)
...++|.|+|.|......| -.=|- ++|.. .+++ .-++|+|+ +++.|+.+..
T Consensus 440 ~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 440 DKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhccccc
Confidence 7788999999887522111 01111 23332 2444 56899999 9988877655
No 296
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.46 E-value=0.15 Score=47.67 Aligned_cols=104 Identities=21% Similarity=0.065 Sum_probs=78.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh---------hc-
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM---------RD- 293 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al---------~~- 293 (347)
....|.++...|..++....- ..--.-....|-.+..+..++.++..+|+++.|.+.+++|| ..
T Consensus 6 hs~~Y~~~q~~F~~~v~~~Dp------~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~ 79 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSHDP------NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFS 79 (360)
T ss_pred CCHHHHHHHHHHHHHHHccCH------HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677788888777763210 00000113567788899999999999999999999999997 11
Q ss_pred ----CCC------------C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHH
Q 019054 294 ----GDD------------N---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGG 333 (347)
Q Consensus 294 ----~p~------------~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~ 333 (347)
++. | ..++++....+.+.|.+.-|++..+-.+.++|. |+-
T Consensus 80 ~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 80 PFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred hhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 211 1 468999999999999999999999999999998 664
No 297
>PRK10941 hypothetical protein; Provisional
Probab=95.44 E-value=0.065 Score=47.72 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=67.6
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
+-+.++=..+.+.++|+.|+..-+..+. +.|..+.-+.-+|.+|.+++.+..|+.+++..++
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~------------------l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQ------------------FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3345555678899999999999999999 8999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHH
Q 019054 293 DGDDNVKALFRQGQAY 308 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~ 308 (347)
..|+++.+-.-+.++.
T Consensus 244 ~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 244 QCPEDPISEMIRAQIH 259 (269)
T ss_pred hCCCchhHHHHHHHHH
Confidence 9999987766555443
No 298
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.39 E-value=0.097 Score=53.53 Aligned_cols=128 Identities=13% Similarity=-0.034 Sum_probs=79.3
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhh------------hccccCCCChhhh--hhHH-----hhHHHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLD------------ICWEKEGIDEGKS--SSLR-----KTKSQIFTNSSA 272 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~------------~~~~~~~~~~~~~--~~~~-----~~~~~~~~nla~ 272 (347)
...+..+...|.+.|+.++|++.|++.++.=- .+......+.... ..+. ......|..+..
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 45577777788888888888888887654100 0000000000000 0000 011235667778
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 273 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
++.+.|++++|.+.+++.- ..| +...|..+..++...|+++.|...+++.+++.|++......|..+
T Consensus 471 ~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred HHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 8888888888888776542 233 455677788888888899999988888889888876554444444
No 299
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.26 E-value=0.25 Score=46.74 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=76.7
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~ 303 (347)
+.++++.....|++.|. ..|.+..+|...|..-..+|+.+.|...|+-|+....-+..-+..
T Consensus 449 qL~efDRcRkLYEkfle------------------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLE------------------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHhhHHHHHHHHHHHHh------------------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 46678888888888888 889999999999999999999999999999999776555444444
Q ss_pred HHHHH--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 304 QGQAY--MALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 304 ~g~~~--~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
.+.+- ...|+++.|...|++.|+..+..+ ++-..+..
T Consensus 511 kaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~f 549 (677)
T KOG1915|consen 511 KAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKF 549 (677)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHH
Confidence 44443 346889999999999999987666 55444443
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.25 E-value=0.35 Score=39.25 Aligned_cols=86 Identities=15% Similarity=0.005 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
......+..+..+-.+.++.+++...+...--+.|..+..-..-|..+...|+|.+|+..++...+-.|..+..+..++.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34456677788888899999999999998889999999999999999999999999999999999999999999998888
Q ss_pred HHHHhc
Q 019054 341 AKKKVS 346 (347)
Q Consensus 341 ~~~~~~ 346 (347)
|...++
T Consensus 87 CL~~~~ 92 (160)
T PF09613_consen 87 CLYALG 92 (160)
T ss_pred HHHHcC
Confidence 876543
No 301
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.23 E-value=0.15 Score=49.44 Aligned_cols=78 Identities=17% Similarity=0.082 Sum_probs=65.2
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
.-|...-.++..|.++...|+.++|++.+++++...... .-+++.+|.++..+.+|++|..+|.+..+.+.-.+..
T Consensus 262 ~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~ 341 (468)
T PF10300_consen 262 RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAF 341 (468)
T ss_pred hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHH
Confidence 667788889999999999999999999999999544332 4578999999999999999999999999987654444
Q ss_pred HH
Q 019054 335 KK 336 (347)
Q Consensus 335 ~~ 336 (347)
..
T Consensus 342 Y~ 343 (468)
T PF10300_consen 342 YA 343 (468)
T ss_pred HH
Confidence 33
No 302
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.13 E-value=0.34 Score=43.59 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=77.7
Q ss_pred HHcCccccc-hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 216 KVFGNEHYK-KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 216 ~~~g~~~~~-~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
...|..-+. .++.+.|...|+.+++ .-+....+|......+.++++.+.|...+++++..-
T Consensus 39 ~~~A~~E~~~~~d~~~A~~Ife~glk------------------~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l 100 (280)
T PF05843_consen 39 VAYALMEYYCNKDPKRARKIFERGLK------------------KFPSDPDFWLEYLDFLIKLNDINNARALFERAISSL 100 (280)
T ss_dssp HHHHHHHHHTCS-HHHHHHHHHHHHH------------------HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 334444333 5777779999999999 667777888888889999999999999999999876
Q ss_pred CCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054 295 DDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 295 p~~~---~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 337 (347)
|... ..|-+...--...|+.+......+++.++.|.+..+...
T Consensus 101 ~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 101 PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5543 455556666667799999999999999999987665543
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.08 E-value=0.055 Score=32.74 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
+.++.++|.+|..+|++++|+..+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999998863
No 304
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.01 E-value=0.082 Score=39.01 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=47.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
.+.++|.+|++.+.+...+....... ........++.++|.++...|++++|+..+++|+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~---------~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNS---------SSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccc---------hhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46789999999999988854322100 01223456788899999999999999999999987643
No 305
>PLN03077 Protein ECB2; Provisional
Probab=94.99 E-value=0.21 Score=52.37 Aligned_cols=131 Identities=14% Similarity=0.036 Sum_probs=77.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHh--h----------hccccCCCChhh--hhhHH-----hhHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYL--D----------ICWEKEGIDEGK--SSSLR-----KTKSQIFTNSS 271 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~--~----------~~~~~~~~~~~~--~~~~~-----~~~~~~~~nla 271 (347)
....+..+...+.+.|+.++|++.|++..+.= + .+......++.. ...+. ......|..+.
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 34567777778888888888888888766510 0 000000000000 00010 11224567777
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 272 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
.++.+.|++++|.+.+++. .+.|+ +..|..+-.++..-++.+.|....+++++++|++......|..+..
T Consensus 633 ~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 7777778888887777664 34443 4455555556666777777777778888888887777666655543
No 306
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.82 E-value=0.36 Score=35.27 Aligned_cols=55 Identities=18% Similarity=0.027 Sum_probs=41.0
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHhcCC
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALND 313 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~~~ 313 (347)
.+|.+..+.+.+|..++..|++++|++.+-.+++.++++ ..+--.+=.++..+|.
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999998876 3444444444444444
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.77 E-value=0.2 Score=44.51 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=62.2
Q ss_pred hhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 257 SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 257 ~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
+.+.......+...|..|.+.|.+.+|+..+++++.++|-+...+.-+-.++..+|+--+|+..|++.-+
T Consensus 272 erle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 272 ERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4466677778888899999999999999999999999999999999999999999998888888877644
No 308
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.70 E-value=0.22 Score=38.12 Aligned_cols=73 Identities=18% Similarity=0.075 Sum_probs=55.6
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
-+--++..+...|+|++++..-.++|.|++....+. ..-....+.+.+++|.++-.+|+.++|+..++.+.++
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-------qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH-------QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-------STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-------cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344456667788999999999999999998653332 1244567788999999999999999999999998754
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.59 E-value=0.33 Score=44.80 Aligned_cols=116 Identities=18% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHH-Hhhhcccc--------------CCCC-hhhhhhHHhhHHHHHHHHHHHHHHc-
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEK--------------EGID-EGKSSSLRKTKSQIFTNSSACKLKL- 277 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~-~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~nla~~~~~l- 277 (347)
....+..+...|+-.+|+......+. .+...... .... ...........+.++..+|.-...+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~ 266 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY 266 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence 34445555666677788887777776 22211000 0000 0012234556678888899988888
Q ss_pred -----CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhhCCC
Q 019054 278 -----GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV-----------------DAAVESFEKALKLEPN 330 (347)
Q Consensus 278 -----~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~-----------------~~A~~~~~~al~l~P~ 330 (347)
+..++++..|.+|+.++|...++|+..|..+..+-+. ..|+..|-+|+.+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8999999999999999999999999999887765322 3488999999999886
No 310
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.17 Score=46.37 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCc--eEEeccCCCCCCCCCCcccCCCCCCCcc
Q 019054 19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGF--MIQGGDISAGDGTGGESIYGLKFEDENF 96 (347)
Q Consensus 19 ~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 96 (347)
=|+||||.+.||.++..|+.+..-. ..+ --....|=..++. +..-|+.. ++....+||.
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~-~kp--------VGkL~Vhfay~d~~~vmfegn~~----------~~K~llPEN~ 437 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLK-TKP--------VGKLKVHFAYDDTYLVMFEGNAV----------LAKGLLPENT 437 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcccc-ccc--------ccceEEEEEeCCceEEEEcCChH----------HhccCCCCCC
Confidence 4789999999999999999986432 111 1123566666763 22333322 3444566777
Q ss_pred ccCCCCccEEEeeeCCCCCCCceEEEec------CCCCCCCCCCceeeEEEeChHHHHHHhc
Q 019054 97 ELKHERKGMLSMANAGPNTNGSQFFITT------TRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (347)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~~~sqF~i~~------~~~~~l~~~~~vfG~v~~g~~vl~~I~~ 152 (347)
......+|.+++.|....-.|. .=+-| +|...-=...-++|++++|.+-+..|..
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~Gm-IGVRL~dsdefGPTGE~Fe~TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHMGM-IGVRLEDSDEFGPTGEKFEGTNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred chhheecccccccccchhccce-eEEEeccccccCCCCCccccceeehhhccChHHhccccc
Confidence 6666677777766554211111 11112 2322222346689999999999888766
No 311
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=0.32 Score=42.19 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=52.7
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+-..|..+-+...+.++..+|++|..+..+. -.|.-+..-...|.=..+..++++|+..|++++.+-
T Consensus 74 yEqaamLake~~klsEvvdl~eKAs~lY~E~-------------GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLSEVVDLYEKASELYVEC-------------GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV 140 (308)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-------------CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 3334444445556666666666666644332 222333333444555556677778888887776543
Q ss_pred CCC------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 295 DDN------VKALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 295 p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
... ...+-..+.++..+.+|++|...+.+
T Consensus 141 e~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 141 EEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred hccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 221 23344455666667777776655544
No 312
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.10 E-value=1.2 Score=39.99 Aligned_cols=104 Identities=16% Similarity=0.146 Sum_probs=76.0
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHhhc----CC-
Q 019054 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRD----GD- 295 (347)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~----~p- 295 (347)
..++|+++.|..+|.|+-.+.... ...........++|.|....+.+ +++.|+.++++|+++ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~----------~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL----------DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC----------CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 457899999999999997744211 11244566788999999999999 999999999999877 22
Q ss_pred --CC-------hhHHHHHHHHHHhcCCHHH---HHHHHHHHHhhCCCCHHHH
Q 019054 296 --DN-------VKALFRQGQAYMALNDVDA---AVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 296 --~~-------~~a~~~~g~~~~~~~~~~~---A~~~~~~al~l~P~~~~~~ 335 (347)
.. ...+..++.+|...+.++. |...++.+..-.|+.+.+.
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 11 4678889999999887664 4444445555567766655
No 313
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.08 E-value=0.3 Score=37.52 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=79.7
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH----
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA---- 290 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a---- 290 (347)
+..+|+..++.+++-.|+-+|++|+......+.....+.++ +--..+.-..|+|..+..+|+.+-.+.+++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~d---ll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELED---LLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV 80 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHH---HHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 45678888999999999999999999877664333333222 44456677889999999999999999988654
Q ss_pred hhcCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~-~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
+.+-|..+..-. .+ ...+|--..|+-+| ++..| ||.+...+..
T Consensus 81 ltLiPQCp~~~C---~afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq~ 124 (140)
T PF10952_consen 81 LTLIPQCPNTEC---EAFIDSLGCCKKALLDF---MKRHP-NPEIARLVQH 124 (140)
T ss_pred HHhccCCCCcch---HHHHHhhhccHHHHHHH---HHhCC-CHHHHHHHHh
Confidence 566666543211 12 23456666676665 55666 6666665544
No 314
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.04 E-value=0.21 Score=46.21 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=78.4
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+..+|.-|..-|+++.|++.|.++-.|.. .....+.++.|+-.+-..+++|.....+-.+|...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT---------------s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCT---------------SAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhc---------------chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456788888999999999999999766542 45667788999999999999999999999998866
Q ss_pred C--------CCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054 294 G--------DDNVKALFRQGQAYMALNDVDAAVESFEKA 324 (347)
Q Consensus 294 ~--------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 324 (347)
- .-.++....-|.+...+++|..|.+.|-.+
T Consensus 217 ~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 217 PDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred chhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2 112567778889999999999999988655
No 315
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.02 E-value=0.26 Score=49.88 Aligned_cols=106 Identities=16% Similarity=0.026 Sum_probs=77.5
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
..-.|-.+++.|++++|.... .++.. ..+.+-..+--+-.||..++++++|...|++++..+
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~L-e~~~~-----------------~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~ 107 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLL-EALYG-----------------LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY 107 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHH-hhhcc-----------------CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 344566788899999999444 34331 222234455667799999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
|. .+.++.+=.+|.+.+.|.+=.+.--+..+..|.++-..+...
T Consensus 108 P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 108 PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 98 888888889999988887755554455557788776544433
No 316
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=1.5 Score=41.81 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=75.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+.-+|--...-+.|+.|..+|..|.+... .....+-+..|+|..|+..++-+. +.++
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~---------------~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ 426 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE---------------SIDLQAFCNLNLAISYLRIGDAED----LYKA 426 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh---------------HHHHHHHHHHhHHHHHHHhccHHH----HHHH
Confidence 355566777777788899999999999998543 344567788899999999776433 2333
Q ss_pred h-hcCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 291 M-RDGDDN----------VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 291 l-~~~p~~----------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
+ .+.|.| ..++|..|.-.+..+++.||...+.+.++..
T Consensus 427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3 344443 4578889999999999999999999999886
No 317
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.97 E-value=0.13 Score=46.10 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=70.0
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR-QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~-~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
-+.++.+|...+....+.+.|.+.-..|.+++..+|.|+..|.. .+.-+...++++.+...|.++++++|.++.++.+.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 34566777777777788899999999999999999999998877 56678888999999999999999999999988765
Q ss_pred HHH
Q 019054 339 AVA 341 (347)
Q Consensus 339 ~~~ 341 (347)
-+.
T Consensus 183 fr~ 185 (435)
T COG5191 183 FRM 185 (435)
T ss_pred HHH
Confidence 443
No 318
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.96 E-value=0.29 Score=36.08 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=47.0
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 273 CKLKLGDLKGALLDTEFAMRDGDD---------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 273 ~~~~l~~~~~A~~~~~~al~~~p~---------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
-..+.++|..|++.+.+.+..... ..-++.++|.++...|++++|+..+++|+++...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345789999999888888755322 1467889999999999999999999999998653
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.83 E-value=0.27 Score=38.53 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=53.7
Q ss_pred HHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 214 SIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 214 ~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
..++.+..+.+ ..+-++-+..++..++. ......-.+.+-+|..+.++++|++++.+++..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~----------------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKS----------------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhh----------------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 34555555543 33455566666666540 022234467788999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQA 307 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~ 307 (347)
|+.+|+|.+|.-..-.+
T Consensus 98 l~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 98 LETEPNNRQALELKETI 114 (149)
T ss_pred HhhCCCcHHHHHHHHHH
Confidence 99999998876554433
No 320
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=93.78 E-value=1.7 Score=37.67 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=71.4
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH-HH-HHHHHHHhh-cC-CC
Q 019054 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK-GA-LLDTEFAMR-DG-DD 296 (347)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~-~A-~~~~~~al~-~~-p~ 296 (347)
.+|..|+|+.|++....||+.= +.-+ +.-..+.....++-...-|....+.|..- -. ...+..+.. .+ |+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~-----l~~P-d~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd 165 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHG-----LTMP-DQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPD 165 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcC-----CCCC-ccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCCh
Confidence 4578999999999999999821 1111 11111234444555566666666776632 21 111222211 11 33
Q ss_pred C--hhHHHHHHHHHH---------hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 297 N--VKALFRQGQAYM---------ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 297 ~--~~a~~~~g~~~~---------~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
. +|-|-..|.++. ..++...|+..+++|++++| +..++..+.+++++++
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~-k~GVK~~i~~l~~~lr 225 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND-KCGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHh
Confidence 3 455556677663 45688999999999999997 4556666666666653
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.66 E-value=0.56 Score=40.35 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=54.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.|.....+|..+-..++-+.....+++|+..+..+........ ..-....+++-+|..+.++|++++|+.++.++
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-----~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI-----EGMDEATLLYLIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-----CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555555666665556555555555555554443322221111 11123457888999999999999999999999
Q ss_pred hhcCCCCh-hHHHHHHH
Q 019054 291 MRDGDDNV-KALFRQGQ 306 (347)
Q Consensus 291 l~~~p~~~-~a~~~~g~ 306 (347)
+.....+. ..+..+|.
T Consensus 192 i~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 192 IGSKKASKEPKLKDMAR 208 (214)
T ss_pred HcCCCCCCcHHHHHHHH
Confidence 97654433 34555544
No 322
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.54 E-value=0.35 Score=50.50 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=75.7
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc----C---ChHHHHHHHHHH
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----G---DLKGALLDTEFA 290 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~---~~~~A~~~~~~a 290 (347)
..+++...+.|+.|+..|++....++ -.....++.+..|...+.. + .+.+|+.-+++.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFP---------------GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL 545 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCC---------------CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 45566778899999999998877432 2233456777777777653 2 355555555443
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 337 (347)
- -.|.-+--|.-.|.+|..+++|+|-+++|..|++..|+++.+-..
T Consensus 546 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 546 H-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred c-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 2 235556778888999999999999999999999999999886543
No 323
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.52 E-value=1.3 Score=41.02 Aligned_cols=98 Identities=17% Similarity=0.015 Sum_probs=75.8
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+.-.+....-.|+|+.|...|+.-+. .......-+..+=.....+|..+.|+.|...|-
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa 181 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD------------------DPETRLLGLRGLYLEAQRLGAREAARHYAERAA 181 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc------------------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33445556667778999999999998887 333333333334444567899999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
...|.-..++...-......|+|+.|++..+...+-
T Consensus 182 ~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 182 EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 999999888888888899999999999998766543
No 324
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.48 E-value=0.28 Score=29.07 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCCC
Q 019054 299 KALFRQGQAYMALNDVDAAVES--FEKALKLEPND 331 (347)
Q Consensus 299 ~a~~~~g~~~~~~~~~~~A~~~--~~~al~l~P~~ 331 (347)
+.++.+|..+..+|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3466677777777777777777 33666666543
No 325
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.23 E-value=0.33 Score=51.54 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
......-|+..++.|+.+.+...++..|..+|.....|.-....-...++.+-+...|++++.+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 3444444555555555555555555555555555555555445545555555555555555544
No 326
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=1.1 Score=43.61 Aligned_cols=104 Identities=23% Similarity=0.127 Sum_probs=81.5
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHH-HHHHhhcCCCChh
Q 019054 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD-TEFAMRDGDDNVK 299 (347)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~-~~~al~~~p~~~~ 299 (347)
.+...++...|+.....++. .++..+.++.|++.+....+..-.++.. +..+....|++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~------------------~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~ 137 (620)
T COG3914 76 LLAPLADSTLAFLAKRIPLS------------------VNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAE 137 (620)
T ss_pred hccccccchhHHHHHhhhHh------------------cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHH
Confidence 33445556666666777776 7888999999999999888776665554 4559999999987
Q ss_pred HHHHH------HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 300 ALFRQ------GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 300 a~~~~------g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
.+..+ +.....+++..++...++++..+.|.++.+...+....
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 138 FLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred HHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 76666 88999999999999999999999999987776665543
No 327
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=0.46 Score=46.55 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
.++.|-|.-.+++++|..+++.|...+..-|.+ +|....++.||..+.+.+.|.+.+++|-+.+|.++--...+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 456788899999999999999999999776654 78888999999999999999999999999999877544443
No 328
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=93.02 E-value=0.73 Score=43.58 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=64.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHH-H-HHHHHcCC-----hHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS-S-ACKLKLGD-----LKGA 283 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl-a-~~~~~l~~-----~~~A 283 (347)
........|-.++..|+|.+|+..|+..|..+.-+......+.++ .......+..-+ | .+-++.+. .+..
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e---~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDE---AKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHH---HHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 334455678888999999999999999999776543333222222 222222222111 1 11122222 1222
Q ss_pred HHHHHHHh-----hcCCCChhHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054 284 LLDTEFAM-----RDGDDNVKALFRQG-QAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (347)
Q Consensus 284 ~~~~~~al-----~~~p~~~~a~~~~g-~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 336 (347)
.+.++-|. ++.|.+-..-++.| ...++.++|.-|...-++.|++.|..+.+.+
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence 23333332 44444433333333 3456679999999999999999998765433
No 329
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.88 E-value=1.1 Score=47.74 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
..|..|+-+|.+-+++++|.+.++.-++......+.|...|..++...+-++|...+.+|++.-|.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 455666666666666666666666666655555666666666666666666666666666666665
No 330
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.81 E-value=0.18 Score=30.32 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
.+|..+|.+-+..++|+.|+.++.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999764
No 331
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.72 E-value=2.3 Score=38.22 Aligned_cols=105 Identities=24% Similarity=0.181 Sum_probs=76.3
Q ss_pred HHHHHcCccccc----hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH-HHHHHHHHHHHHHcC-------Ch
Q 019054 213 DSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLG-------DL 280 (347)
Q Consensus 213 ~~~~~~g~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l~-------~~ 280 (347)
.....+|..+.. ..++.+|..+|.+|.+ ..... ..+.++++.+|..-. +.
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~------------------~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAK------------------LGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH------------------cCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 355666666665 5599999999999987 21111 344777777776631 23
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
..|+..+.+|.... +..+.+++|.+|.. ..++++|..+|++|.+... ......+.
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 37888998888776 88999999988855 4589999999999999875 55555544
No 332
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.67 E-value=0.41 Score=45.11 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=57.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHH
Q 019054 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----DGGIKKELAVAKKK 344 (347)
Q Consensus 270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~----~~~~~~~l~~~~~~ 344 (347)
=|...+..|+|.++..++.-..+++| ++.++..+|.+++..++|++|..++.. +-|+ |..+.+.+..|++-
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKH 542 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHh
Confidence 35556779999999999999999999 999999999999999999999998764 3343 34466666666653
No 333
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.54 E-value=1.3 Score=40.81 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=90.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+...+....+.|+++.|.....++..+... .....+.+.+..+......|+..+|+...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~--------------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPS--------------SESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc--------------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566788888889999999999999888762110 11124566777788888999999999988887
Q ss_pred hhc--C-C-------------------------------CChhHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCC
Q 019054 291 MRD--G-D-------------------------------DNVKALFRQGQAYMAL------NDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 291 l~~--~-p-------------------------------~~~~a~~~~g~~~~~~------~~~~~A~~~~~~al~l~P~ 330 (347)
+.- . + ..+++++.+|.-...+ +.+++++..|+++.+++|.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 761 1 0 0157888888888888 8999999999999999998
Q ss_pred CHHHHHHHHHHHHH
Q 019054 331 DGGIKKELAVAKKK 344 (347)
Q Consensus 331 ~~~~~~~l~~~~~~ 344 (347)
...++..++.....
T Consensus 291 ~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 291 WEKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877776665443
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.17 E-value=2.3 Score=34.06 Aligned_cols=78 Identities=14% Similarity=-0.030 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+..+..+-....+++++.......--+.|..+..-..-|..+...|+|.+|+..++...+-.|..+..+..++.|...
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 333444444456666665555555555666666666666666666666666666666555555555555555555443
No 335
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.07 E-value=0.65 Score=41.36 Aligned_cols=62 Identities=16% Similarity=-0.064 Sum_probs=51.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 283 A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
|+.+|.+|+.+.|++...|..+|.++...++.=+|+-.|-+++-..-..+.+..+|..+-++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999987655567788888777655
No 336
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.05 E-value=0.21 Score=48.32 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=83.3
Q ss_pred HHcCcccc-chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 216 KVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 216 ~~~g~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
..++..|. .+|+..+|+.+|..|+-..+ +-..-.+++.+|.++.++|...+|--.+..|+.-.
T Consensus 216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~----------------~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 216 HNMASFYWRIKGEPYQAVECAMRALHFSS----------------RHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHhhhCC----------------cccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 33444443 47899999999999998432 12233578899999999999999988888888888
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
|.-...+|.+|.++.++++|.....+|..+.+..|.-.+
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 777788999999999999999999999999999997443
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.95 E-value=2 Score=36.05 Aligned_cols=103 Identities=14% Similarity=0.213 Sum_probs=69.5
Q ss_pred cCccccchhhH---HHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH------HHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 218 FGNEHYKKQDY---KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK------SQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 218 ~g~~~~~~g~y---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
.|..++...+- .+|-..|++++..+..- .+.......++...+ .-+-+.+|..+...+++++|+..++
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak---~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~ 113 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAK---KPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLK 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45556554444 47888899998865421 111111112222222 1234567888889999999999999
Q ss_pred HHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 289 FAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 289 ~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
.++....+. .-+-.|+|.+...+|.+++|+..+..
T Consensus 114 ~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 114 QALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 999665443 45678899999999999999988764
No 338
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.82 E-value=3.3 Score=38.08 Aligned_cols=83 Identities=13% Similarity=0.049 Sum_probs=67.3
Q ss_pred HHhhHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 259 LRKTKSQIFTNSSACKLKLGD------------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~------------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
.+|.+..+|..+....-++-. .+..+..+++||+.+|++.+.+..+-.+.....+-++..+-+++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677777777777665555432 45668899999999999999988888888899999999999999999
Q ss_pred hCCCCHHHHHHHHHH
Q 019054 327 LEPNDGGIKKELAVA 341 (347)
Q Consensus 327 l~P~~~~~~~~l~~~ 341 (347)
.+|++..++...-..
T Consensus 94 ~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 94 KNPGSPELWREYLDF 108 (321)
T ss_pred HCCCChHHHHHHHHH
Confidence 999999887765443
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.79 E-value=0.91 Score=45.99 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHh----------hcCCC----------ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAM----------RDGDD----------NVKALFRQGQAYMALNDVDAAVESFE 322 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al----------~~~p~----------~~~a~~~~g~~~~~~~~~~~A~~~~~ 322 (347)
.-..|+|.|.-+...++.+.|+++|+++= .-+|. +.+.|.+-|+-+...|+.+.|+..|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 34568889988888999999999998862 22333 34667778999999999999999999
Q ss_pred HHHhh
Q 019054 323 KALKL 327 (347)
Q Consensus 323 ~al~l 327 (347)
.|-..
T Consensus 937 ~A~D~ 941 (1416)
T KOG3617|consen 937 SAKDY 941 (1416)
T ss_pred Hhhhh
Confidence 88654
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.78 E-value=0.27 Score=26.61 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 019054 300 ALFRQGQAYMALNDVDAAVESFE 322 (347)
Q Consensus 300 a~~~~g~~~~~~~~~~~A~~~~~ 322 (347)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666655543
No 341
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=2.6 Score=41.11 Aligned_cols=117 Identities=21% Similarity=0.050 Sum_probs=85.2
Q ss_pred HHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh-
Q 019054 216 KVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM- 291 (347)
Q Consensus 216 ~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al- 291 (347)
...|..+|+ ...|++|...|.-|....+- -.-.......|....-+..+|.++..+|+.+-|.....++|
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~------n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDP------NNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCC------cceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 445666664 66788999888888774321 01111112457788889999999999999988877777766
Q ss_pred -----------------h---cCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Q 019054 292 -----------------R---DGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKEL 338 (347)
Q Consensus 292 -----------------~---~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~l 338 (347)
+ +.|.| ..++++.-+.+.+.|.+.-|.+.++-.++++|. |+...-.+
T Consensus 313 ~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ 383 (665)
T KOG2422|consen 313 VFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYL 383 (665)
T ss_pred HHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHH
Confidence 1 12333 568888999999999999999999999999998 77654443
No 342
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.26 E-value=5.1 Score=37.45 Aligned_cols=85 Identities=14% Similarity=-0.020 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCCChhHHHHHHHHHHh---cCCHHHHHHHHHH-HHhhCCCCH
Q 019054 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDDNVKALFRQGQAYMA---LNDVDAAVESFEK-ALKLEPNDG 332 (347)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~---~~~~~~A~~~~~~-al~l~P~~~ 332 (347)
-.......++-.+|....+|+.-+...+..-.+ -++.....+..|.|+.. .|+.++|+..+.. .....+.++
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 344566778889999999999999988877666 34566777788888888 8999999999998 455566788
Q ss_pred HHHHHHHHHHHHh
Q 019054 333 GIKKELAVAKKKV 345 (347)
Q Consensus 333 ~~~~~l~~~~~~~ 345 (347)
+..-.++.+.+.+
T Consensus 218 d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 218 DTLGLLGRIYKDL 230 (374)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887654
No 343
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.76 E-value=2.6 Score=41.90 Aligned_cols=100 Identities=21% Similarity=0.088 Sum_probs=51.5
Q ss_pred HHHHHHcCccccc-----hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-----ChH
Q 019054 212 VDSIKVFGNEHYK-----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK 281 (347)
Q Consensus 212 a~~~~~~g~~~~~-----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~ 281 (347)
+.+...+|..++. .++.+.|+.+|..+.+-+... .......+.+.+|.+|.+-. ++.
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-------------a~~~~~~a~~~lg~~Y~~g~~~~~~d~~ 310 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-------------ATKGLPPAQYGLGRLYLQGLGVEKIDYE 310 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-------------HhhcCCccccHHHHHHhcCCCCccccHH
Confidence 4445555555543 578999999999998721100 11112334445555555522 344
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 019054 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALK 326 (347)
Q Consensus 282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~---~~~~A~~~~~~al~ 326 (347)
.|+.++.+|-.+. ++.+.+++|.+|..-. ++..|..+|..|.+
T Consensus 311 ~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 311 KALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 4555555554443 3445555555554433 34455555555544
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.70 E-value=1.2 Score=27.63 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 019054 302 FRQGQAYMALNDVDAAVESFEKAL 325 (347)
Q Consensus 302 ~~~g~~~~~~~~~~~A~~~~~~al 325 (347)
+.+|.+|..+|+++.|...+++.+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 455666666666666666666666
No 345
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.66 E-value=3.7 Score=38.35 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHH---cCChHHHHHHHHHHh-hcCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCC
Q 019054 263 KSQIFTNSSACKLK---LGDLKGALLDTEFAM-RDGDDNVKALFRQGQAYMAL---------NDVDAAVESFEKALKLEP 329 (347)
Q Consensus 263 ~~~~~~nla~~~~~---l~~~~~A~~~~~~al-~~~p~~~~a~~~~g~~~~~~---------~~~~~A~~~~~~al~l~P 329 (347)
...+....|.++.+ .|+.++|+..+..++ ...+.++..+...|.+|..+ ...++|+..|.++.+++|
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 44456667777777 899999999999955 45567788999999887653 347789999999999997
Q ss_pred CC
Q 019054 330 ND 331 (347)
Q Consensus 330 ~~ 331 (347)
+.
T Consensus 258 ~~ 259 (374)
T PF13281_consen 258 DY 259 (374)
T ss_pred cc
Confidence 53
No 346
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=90.58 E-value=0.98 Score=31.80 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=29.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhh
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~ 244 (347)
.|..+...|..+=+.|+|++|+.+|..|++++..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5677778888888999999999999999998765
No 347
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.55 E-value=0.77 Score=44.12 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=60.5
Q ss_pred HcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL---NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 276 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~---~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
....+..|+.+|.+++...|.....|.+++.+++.. |+--.|+.+...|++++|....++..|.++...+.
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999998885 46667999999999999998888888887766553
No 348
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.52 E-value=4.1 Score=37.97 Aligned_cols=57 Identities=25% Similarity=0.165 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 335 (347)
-+...|..+..+++++.|+...+-.--+.+++..|+..++-..++.+.+.+|+ +++.
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia 299 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA 299 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH
Confidence 45889999999999999999999999999999999999999999999999984 4443
No 349
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.21 E-value=1 Score=30.93 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=30.7
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~ 247 (347)
+.|..+...|..+-+.|+|++|+.+|.+|+.++.....
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35666777777888899999999999999998765533
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.02 E-value=7.3 Score=31.27 Aligned_cols=57 Identities=11% Similarity=-0.051 Sum_probs=50.4
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD 315 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~ 315 (347)
+.|....+-.--|..++..|+|.+|+..++.+.+-.+..+-+.-.++.|+..+|+.+
T Consensus 39 LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 39 LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 778888888888999999999999999999999988888877778889999999863
No 351
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.94 E-value=3.8 Score=40.75 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=73.2
Q ss_pred HHHcCccccch----h-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC---ChHHHHHH
Q 019054 215 IKVFGNEHYKK----Q-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLD 286 (347)
Q Consensus 215 ~~~~g~~~~~~----g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~ 286 (347)
...+|..|++. . ++..|+.+|.++.+ -.++.+.+++|.|+..-. ++..|..+
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~--------------------~g~~~a~~~lg~~~~~g~~~~d~~~A~~y 350 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAE--------------------LGNPDAQYLLGVLYETGTKERDYRRAFEY 350 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHh--------------------cCCchHHHHHHHHHHcCCccccHHHHHHH
Confidence 34566666652 2 78889999999966 345678888999998765 67899999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 019054 287 TEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLE 328 (347)
Q Consensus 287 ~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~ 328 (347)
|..|... .+..|.+++|.+|.. ..+.+.|..+|+++.+..
T Consensus 351 y~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 351 YSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 9998876 478999999999876 357889999999999987
No 352
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.81 E-value=1.6 Score=32.99 Aligned_cols=70 Identities=23% Similarity=0.212 Sum_probs=53.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 019054 270 SSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 270 la~~~~~l~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~~~~-----------~~~A~~~~~~al~l~P~~~~~~ 335 (347)
+|.-++..|++-+|++..+..+...+++. -.+...|.++..+.. .-.|+++|.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56778899999999999999998887765 456667877766542 2358999999999999875555
Q ss_pred HHHH
Q 019054 336 KELA 339 (347)
Q Consensus 336 ~~l~ 339 (347)
..|+
T Consensus 82 ~~la 85 (111)
T PF04781_consen 82 FELA 85 (111)
T ss_pred HHHH
Confidence 4444
No 353
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.68 E-value=1.1 Score=26.55 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH--HHhhcCCCC
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTE--FAMRDGDDN 297 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~--~al~~~p~~ 297 (347)
+.+..+|..+...|++++|+..++ -+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 356778999999999999999944 888777754
No 354
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.65 E-value=11 Score=31.36 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=62.9
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCHHH
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEP--NDGGI 334 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P--~~~~~ 334 (347)
....-.++..+|.-|.+.|++++|++.|.++....... ...++++-.+....++|......+.++-.+-. .+.+.
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 33445789999999999999999999999988765433 46778888888999999999999999877643 34555
Q ss_pred HHHHHH
Q 019054 335 KKELAV 340 (347)
Q Consensus 335 ~~~l~~ 340 (347)
+..|..
T Consensus 112 ~nrlk~ 117 (177)
T PF10602_consen 112 RNRLKV 117 (177)
T ss_pred HHHHHH
Confidence 544443
No 355
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.52 E-value=1.4 Score=44.65 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=68.0
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccc--cCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh-
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWE--KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM- 291 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al- 291 (347)
+++.+.-+-.+++.+.|+++|+|+--...+... .+.+-.-+..-.......+|.--|+..-..|+.+.|+.+|..|-
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 344444455566666677777665322211110 11111111111122233566667777777888888888887763
Q ss_pred --------------------hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 292 --------------------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 292 --------------------~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.-...+--|-|.+|..|...|++.+|+..|.+|..+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 112345568899999999999999999998887654
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.29 E-value=3.5 Score=29.17 Aligned_cols=58 Identities=16% Similarity=-0.001 Sum_probs=43.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChh---HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~---a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.|.-++...+.++|+..+++||+..++... ++-.+..+|...|+|++++++-.+-+++
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455788899999999999998877654 4445667899999999988876554444
No 357
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.27 E-value=1.5 Score=30.99 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=30.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (347)
.+..+...|..+-+.|+|++|+.+|.++|.++....
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 566777788888899999999999999999887653
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.25 E-value=0.55 Score=25.37 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
.+..++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
No 359
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.22 E-value=1.4 Score=39.16 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh
Q 019054 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA 310 (347)
Q Consensus 231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 310 (347)
|..+|.+|+. +.|.....|+.+|.++...++.=.|+-+|-+++......+.|.-++...+..
T Consensus 1 A~~~Y~~A~~------------------l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR------------------LLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH------------------H-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH------------------hCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999 8999999999999999999999999999999997776678888888877777
No 360
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.89 E-value=0.82 Score=43.07 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHh--------hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAM--------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al--------~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
.+..+..++.-+|+|..|+...+-.= +.-+.+...+|..|-+|+++++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888999999998765431 11234567899999999999999999999988764
No 361
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.85 E-value=5.2 Score=35.20 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=50.6
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
......+...+|.-|+++|+|++|+..++.+....... ...+..+-.|+..+|+.+..+...-+
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34555677889999999999999999999997654322 56778888999999999888766443
No 362
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.16 E-value=1.5 Score=38.85 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=62.9
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 296 (347)
+.=..+...++++.|...-++.+. +.|..+.-+.-+|.+|.++|.+.-|+.+++..++..|+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~------------------l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLD------------------LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHh------------------hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 333456778899999999999998 88888888999999999999999999999999999999
Q ss_pred ChhHHHHHHHH
Q 019054 297 NVKALFRQGQA 307 (347)
Q Consensus 297 ~~~a~~~~g~~ 307 (347)
.+.+-.-+++.
T Consensus 248 ~~~a~~ir~~l 258 (269)
T COG2912 248 DPIAEMIRAQL 258 (269)
T ss_pred chHHHHHHHHH
Confidence 98776665544
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.07 E-value=3.5 Score=35.32 Aligned_cols=61 Identities=16% Similarity=0.058 Sum_probs=54.9
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 273 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
-.++-+..++|+...+.-++.+|.+...-..+-+.|.-.|+|++|+.-++.+-+++|++..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 4556788999999999999999999988888889999999999999999999999998654
No 364
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.06 E-value=5.6 Score=37.17 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=60.0
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcccc-C-----CCChh-----hhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK-E-----GIDEG-----KSSSLRKTKSQIFTNSSACKLKLGDL 280 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~-~-----~~~~~-----~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (347)
+..+..++.++..+|+++.|.+..++||=.++.+... = ..... -....+.....++........+.|.+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 5667888888888999999999999888766632110 0 11110 00112334455666777888899999
Q ss_pred HHHHHHHHHHhhcCCC
Q 019054 281 KGALLDTEFAMRDGDD 296 (347)
Q Consensus 281 ~~A~~~~~~al~~~p~ 296 (347)
..|+++|+-.+.+||.
T Consensus 120 rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999998
No 365
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=87.82 E-value=2.5 Score=33.76 Aligned_cols=106 Identities=19% Similarity=0.155 Sum_probs=56.3
Q ss_pred eeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCce--EEeccCCCCCCCCCCcccCCCCCCCc
Q 019054 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFM--IQGGDISAGDGTGGESIYGLKFEDEN 95 (347)
Q Consensus 18 G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~--iq~G~~~~~~~~~~~~~~~~~~~~e~ 95 (347)
-.++.+|..|.||+||+-|.+.- - |.+..+|-..-|.. +.-|++.. ....-||
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L--P------------~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN 62 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL--P------------LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGREN 62 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-S
T ss_pred eEEEEEEcccCChHHHHHHHHhC--C------------CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCc
Confidence 36789999999999999999975 1 77778887776653 34455430 1123455
Q ss_pred cccCCCCccEEEee--eC-CCC--CC-CceEEEecCC--------CCCCCCCCceeeEEEeChHHHHHHh
Q 019054 96 FELKHERKGMLSMA--NA-GPN--TN-GSQFFITTTR--------TSHLDGKHVVFGRVIKGMGVVRSIE 151 (347)
Q Consensus 96 ~~~~~~~~g~~~~~--~~-~~~--~~-~sqF~i~~~~--------~~~l~~~~~vfG~v~~g~~vl~~I~ 151 (347)
... +-.+|-|.+. .. ..+ .. =+..-|..+. ..++-| .+|++|++|++-+.++-
T Consensus 63 ~T~-~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~ 129 (147)
T PF12903_consen 63 HTV-TPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEAC 129 (147)
T ss_dssp EES-S--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHH
T ss_pred Ccc-cCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHH
Confidence 433 3446777766 11 111 11 1444444432 223333 68999999998776553
No 366
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.07 E-value=14 Score=33.03 Aligned_cols=83 Identities=29% Similarity=0.194 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChhHHH
Q 019054 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALF 302 (347)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~ 302 (347)
+...|+..|.++-. .....+..++|.+|.. ..++.+|..+|.+|.+... ..+++
T Consensus 170 ~~~~A~~~~~~aa~--------------------~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~ 227 (292)
T COG0790 170 DDKKALYLYRKAAE--------------------LGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACY 227 (292)
T ss_pred HHHhHHHHHHHHHH--------------------hcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHH
Confidence 34467777877755 2367788999988866 4589999999999999886 88899
Q ss_pred HHHHHHHhcC---------------CHHHHHHHHHHHHhhCCCCH
Q 019054 303 RQGQAYMALN---------------DVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 303 ~~g~~~~~~~---------------~~~~A~~~~~~al~l~P~~~ 332 (347)
+++ ++...| +...|...+.++....+...
T Consensus 228 ~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 228 NLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred HHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 999 665555 88889999999888765433
No 367
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=87.06 E-value=2.3 Score=29.82 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=31.2
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (347)
++.+..+...|...-..|+|++|+.+|.+|++++...
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3467778888888889999999999999999977654
No 368
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.00 E-value=1.8 Score=38.19 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=52.5
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
...+|..+++.|+|++|+..|+.+..... .+.-......++..+..|+.++|+.+..+..+-+.+.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr------------~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYR------------REGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH------------hCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 46789999999999999999999976321 1113455667888999999999999999998877653
No 369
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.98 E-value=1.8 Score=34.51 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA 316 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~ 316 (347)
.....+|...+..|+|+.|+..++.++..+|++.++...++.+|.+++.-.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4566778888889999999999999999999999999999999988876554
No 370
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=86.65 E-value=8.9 Score=35.93 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--GD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~--~p--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
..+.+.+.+-.+|+.-+.|+.|-..-.++.-- .. ..+..+|.+|.+..-+.+|..|.+++..|+...|++..
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 34455666778899999999998877776522 12 23677889999999999999999999999999998554
No 371
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=86.64 E-value=9 Score=38.10 Aligned_cols=71 Identities=18% Similarity=0.072 Sum_probs=40.6
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-N----VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~-~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
+.-..+.+-.|.|..+....-+++|-+.|++-+.+.+- + +-.|.......+.-...+.|...|++|++..|
T Consensus 506 LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 506 LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 44444555566666666666666666666666665432 1 23344444455555566666666666666666
No 372
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=86.51 E-value=3.9 Score=29.00 Aligned_cols=67 Identities=19% Similarity=0.062 Sum_probs=43.9
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccC---CCChhhhhhHHhhHHHHHHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE---GIDEGKSSSLRKTKSQIFTNSSACKL 275 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~~~ 275 (347)
.+.|....+.|..+-..|+.++|+.+|+++++.+.+....+ ....+++.........+-.+++.+-.
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~ 74 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKT 74 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888999999999999999887654332 22334444444444444445544433
No 373
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.39 E-value=11 Score=38.00 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=81.2
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-ccCC--CC-----hhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-EKEG--ID-----EGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-~~~~--~~-----~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (347)
+..+.-.|......+..+.|.+++.++++.+.... ..+. .. .+...........++...+.+.+-++++..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 34445556677777777799999999999888765 1111 11 1112233445566777888999999999999
Q ss_pred HHHHHHHhhcC---CC------ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054 284 LLDTEFAMRDG---DD------NVKALFRQGQAYMALNDVDAAVESFE 322 (347)
Q Consensus 284 ~~~~~~al~~~---p~------~~~a~~~~g~~~~~~~~~~~A~~~~~ 322 (347)
....+.+.... |. .+..+|..|..+...|+.+.|+..|.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 98888776542 22 37889999999999999999999998
No 374
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.31 E-value=4 Score=28.63 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=29.8
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhh
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~ 244 (347)
+.+..+...|...-..|+|++|+..|..|++++..
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 45677778888888999999999999999997754
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.26 E-value=14 Score=38.14 Aligned_cols=106 Identities=13% Similarity=0.041 Sum_probs=79.4
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
-....+..+....+|.+|.....++...++.- .........+....-.|.+....+++++|++.++.++..
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~---------~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~ 487 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAP---------MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ 487 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcC---------cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33455666667788888887777766633221 111134445566667888999999999999999999987
Q ss_pred CCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 294 GDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 294 ~p~~-----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
=|.+ .-++...|.+..-.|++++|......+.++.
T Consensus 488 L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 488 LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 6654 5688889999999999999999999988884
No 376
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.25 E-value=11 Score=36.24 Aligned_cols=102 Identities=19% Similarity=0.085 Sum_probs=76.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc---CCC---
Q 019054 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD---GDD--- 296 (347)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~---~p~--- 296 (347)
.-.|-|++|.++-.++|....+....+ ....-+.-.....+.++..|-+-.|++.+|+.....+.+. .|.
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d----~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~L 361 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQAD----LMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLL 361 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccccc----chhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHH
Confidence 467889999999999988654432221 1222345566678889999999999999998877666543 233
Q ss_pred ----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 297 ----NVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 297 ----~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
.+..++.+|.--...+.|+.|...|..|.++-
T Consensus 362 lr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t 397 (629)
T KOG2300|consen 362 LRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT 397 (629)
T ss_pred HHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh
Confidence 35678888888888999999999999999875
No 377
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=3.6 Score=36.84 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=47.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
-+.-....+++.+|...+..++...|.+..+...++.+|...|+.++|...+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344556789999999999999999999999999999999999999988776653
No 378
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=85.92 E-value=3.3 Score=29.10 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=30.2
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (347)
..|..+...|...-+.|+|++|+..|..+|+++...
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456677777888888899999999999999987654
No 379
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.68 E-value=13 Score=36.93 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=78.6
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+...|..|-..|+.+.|...+++|... ++ ..-...+..|++-|..-++..+++.|+...+.|+.+.
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V-~y-------------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP 455 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKV-PY-------------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP 455 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcC-Cc-------------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence 456677777788888888888888761 11 1344567788888888888888888888888887543
Q ss_pred CC------------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 295 DD------------------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 295 p~------------------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
.. +.+.|...+......|=++.....|++.+.|-=-.|++..+.+..
T Consensus 456 ~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf 520 (835)
T KOG2047|consen 456 TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF 520 (835)
T ss_pred CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22 135566666666777777777777888877766666665555544
No 380
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=85.61 E-value=2.8 Score=29.39 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=30.7
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (347)
+.|..+...|...-..|+|++|+.+|..+|+++...
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 466777888888889999999999999999987654
No 381
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=85.43 E-value=5.2 Score=39.13 Aligned_cols=69 Identities=19% Similarity=0.090 Sum_probs=60.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHH-HHhhCCCCHHHHHHH
Q 019054 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK-ALKLEPNDGGIKKEL 338 (347)
Q Consensus 270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~-al~l~P~~~~~~~~l 338 (347)
++..+..++....+......++..+|++..++.+++.+....|..-.++..+.. +.+..|.+.++..-+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 688888899998999999999999999999999999999998877777766655 999999998877766
No 382
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.35 E-value=16 Score=36.78 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=84.2
Q ss_pred hHHHHHHcCcccc-chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 211 ~a~~~~~~g~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
.+.....+|..++ .-.+++.|..+.+|++.+... ..+......+..-++.++.+.+... |+..+++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~ 124 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER------------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDK 124 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence 5777888899888 678999999999999885421 1244455566667789998888877 9999999
Q ss_pred HhhcCCC----ChhHHHHHHHH--HHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Q 019054 290 AMRDGDD----NVKALFRQGQA--YMALNDVDAAVESFEKALKLE--PNDGGIKKELAVA 341 (347)
Q Consensus 290 al~~~p~----~~~a~~~~g~~--~~~~~~~~~A~~~~~~al~l~--P~~~~~~~~l~~~ 341 (347)
+|+.... .+.-.+++-.+ +...+++..|++.++....+. +.++.+...+...
T Consensus 125 ~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 125 AIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 9976544 34444444322 223379999999999998887 4566655444333
No 383
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.03 E-value=4.6 Score=34.13 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC----ChhHHHHHHHHHHhcCCHHHHH
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD----NVKALFRQGQAYMALNDVDAAV 318 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~~~~~~A~ 318 (347)
+.+.+.+|..|. ..+.++|+..+.++|++.+. |+..+.-++.+|..+++++.|-
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455666666655 56777888888888776543 3677777888888888877763
No 384
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=84.96 E-value=3.9 Score=28.61 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=31.1
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcccc
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK 248 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~ 248 (347)
+.|..+...|..+-+.|+|++|+.+|.+|++.+......
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~ 44 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKV 44 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 456667777777778999999999999999988765433
No 385
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=84.43 E-value=3.3 Score=39.25 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=47.6
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.....|.-+|..|+|.++..+-.-..+ ..| .+.+|.-+|.|.+..++|++|..++...
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~------------------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTK------------------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH------------------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 345566777889999999887766666 667 7889999999999999999999887554
No 386
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.34 E-value=6.3 Score=37.10 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=48.8
Q ss_pred cCChHHHHHHHHHHhhcCC-CC----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 277 LGDLKGALLDTEFAMRDGD-DN----------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 277 l~~~~~A~~~~~~al~~~p-~~----------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
.|+|..|++.|++.-.+.. .. .-.--.+..||..+++.+.|+....+++-++|....-+..-+.+.+.+
T Consensus 196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L 275 (569)
T PF15015_consen 196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL 275 (569)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH
Confidence 4555666666655443332 11 123446889999999999999999999999998877666666666655
Q ss_pred c
Q 019054 346 S 346 (347)
Q Consensus 346 ~ 346 (347)
+
T Consensus 276 e 276 (569)
T PF15015_consen 276 E 276 (569)
T ss_pred H
Confidence 4
No 387
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.30 E-value=5.1 Score=31.97 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=40.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 297 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
-......++......|+|.-|.+....++..+|+|.+++...+.+.+.++
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 45666778888889999999999999999999999999999988877664
No 388
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.92 E-value=18 Score=31.98 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=81.4
Q ss_pred CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-CC
Q 019054 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GD 279 (347)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~ 279 (347)
..+++...+...++.... ...-..|++.-+.+|+ +.|.+..+|.-+-.|...+ .+
T Consensus 38 Yte~fr~~m~YfRAI~~~------~E~S~RAl~LT~d~i~------------------lNpAnYTVW~yRr~iL~~l~~d 93 (318)
T KOG0530|consen 38 YTEDFRDVMDYFRAIIAK------NEKSPRALQLTEDAIR------------------LNPANYTVWQYRRVILRHLMSD 93 (318)
T ss_pred echhHHHHHHHHHHHHhc------cccCHHHHHHHHHHHH------------------hCcccchHHHHHHHHHHHhHHH
Confidence 344555555555554443 3445678888888888 7788888887777777766 45
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCHHHHHH
Q 019054 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD-AAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~-~A~~~~~~al~l~P~~~~~~~~ 337 (347)
..+-+++.+++++-+|.|.+.|..|-.+...+|+.. .-++..++++..+..|--+++.
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWsh 152 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSH 152 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHH
Confidence 677788888888888888888888888888888877 7778888888877665554443
No 389
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.84 E-value=2.1 Score=26.63 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 268 TNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 268 ~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
+++|.+|.++|+++.|...+++++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57999999999999999999999953
No 390
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=83.48 E-value=2.1 Score=30.15 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
.-+...|.-+-+.|+|++|+.+|..+++
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445555555566666666666665553
No 391
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.41 E-value=3.6 Score=43.87 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=83.3
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+....+.|......+.+.+|.+ .-+++.++.-. ...+.+....+|..++..+.+++++++|+..+.+|
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v----------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka 999 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV----------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKA 999 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh----------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccc
Confidence 45666777777777888888877 55555543311 11277888999999999999999999999999998
Q ss_pred hhcC--------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 291 l~~~--------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+-+. |+...++-+++...+..++...|+..+.+++++
T Consensus 1000 ~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1000 CIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 7442 445788999999999999999999999998877
No 392
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.24 E-value=5.4 Score=27.97 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+.-+..+|.-+-+.|++++|+.+|++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455666666666677777766666654
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.08 E-value=3.6 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 313 DVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 313 ~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
+++.|...|++++...|.+..++......
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45566666666666666666665555443
No 394
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=82.97 E-value=4.5 Score=28.21 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=29.6
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (347)
+.+..+...|...-+.|+|++|+.+|..|++.+....
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777788999999999999999876553
No 395
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=82.92 E-value=2.8 Score=44.64 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=84.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..++.++..+.+.+++++|+..-.+|.-+-..+.. ...+.....|.|++...+..++...|+..+.++
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g----------~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG----------KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc----------CCCHHHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence 3566788889999999999999988877653322211 145667788999999999999999999999888
Q ss_pred hhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 291 MRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 291 l~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
+.+ .|.-+-...+++..+..+++++.|+++.+.|+.++
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 754 34445566788888899999999999999999865
No 396
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.69 E-value=22 Score=33.43 Aligned_cols=102 Identities=12% Similarity=-0.004 Sum_probs=78.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCChhHH
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--LKGALLDTEFAMRDGDDNVKAL 301 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--~~~A~~~~~~al~~~p~~~~a~ 301 (347)
+....++-+.+-..+|+ ..|....+|+-+..+..+... +..-++.|+++++.||.|-.+|
T Consensus 87 k~~~ld~eL~~~~~~L~------------------~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W 148 (421)
T KOG0529|consen 87 KQALLDEELKYVESALK------------------VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW 148 (421)
T ss_pred HHHhhHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence 34466677777788888 889999999999999987754 6889999999999999998887
Q ss_pred HHHHHHHHhc-CC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 302 FRQGQAYMAL-ND---VDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 302 ~~~g~~~~~~-~~---~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
..|=.+.... .. ..+-++...+++.-++.|-.++..-..+.+
T Consensus 149 ~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 149 HYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 6554444433 33 567788888888888888887776665544
No 397
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.56 E-value=6.7 Score=27.51 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 019054 280 LKGALLDTEFAMRDGDDNVKALFRQGQA 307 (347)
Q Consensus 280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~ 307 (347)
|.+|++.+.+++...|++.+....+..+
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 5666666666766666665544444333
No 398
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=82.46 E-value=0.64 Score=42.42 Aligned_cols=80 Identities=14% Similarity=0.018 Sum_probs=61.2
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 296 (347)
+.+...++.+.|..|+..-..+++ .++....+++.++..++.+.++++|+++...+....|+
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~------------------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALR------------------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred chHHhcccccCCCcceeccccccc------------------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 345555666677777666666666 67778899999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCH
Q 019054 297 NVKALFRQGQAYMALNDV 314 (347)
Q Consensus 297 ~~~a~~~~g~~~~~~~~~ 314 (347)
+....-.+..+-....++
T Consensus 342 d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 342 DKAIEEELENVRQKKKQY 359 (372)
T ss_pred hHHHHHHHHHhhhHHHHH
Confidence 877666555554444443
No 399
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.10 E-value=17 Score=33.44 Aligned_cols=86 Identities=14% Similarity=0.038 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 019054 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (347)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~ 304 (347)
+.-.+..+..|++||+ .+|....++..+-.++.+..+.++...-+++++..+|.+...|..+
T Consensus 44 ~a~~E~klsilerAL~------------------~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 44 RALAERKLSILERALK------------------HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3445667788999999 6777777887777888888999999999999999999886554443
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 305 ---GQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 305 ---g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
-+.....-.++.....|.+|++.-
T Consensus 106 L~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 106 LDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 333333446778888888887653
No 400
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.86 E-value=18 Score=37.40 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=75.9
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHH--HHcC--ChHHH-
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK--LKLG--DLKGA- 283 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~--~~l~--~~~~A- 283 (347)
++....-.+.|-.+...|.|.+|++.|+.+|-.+.-+......+..+..++-.........|..-. .+++ ..+.+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 444556677888899999999999999999986665544444443332222222111111111100 0111 23333
Q ss_pred -HHHHHHHhhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054 284 -LLDTEFAMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 284 -~~~~~~al~~~p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 337 (347)
+..|=.-..+.|-. .-++..--.++++++++..|...-.+.+++.|..+.+.+.
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence 11221223455543 4455555567888999999999999999999976655443
No 401
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.14 E-value=18 Score=32.23 Aligned_cols=106 Identities=12% Similarity=0.069 Sum_probs=69.0
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 296 (347)
.+|+.+|..++|..-.....+.-. ++...+.++...-......+|.---+.|..+++-.+--..|+++|.+...
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~------SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA 223 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQ------SCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSA 223 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHH------HhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc
Confidence 478889998888765544443322 22222322222233345566666677888888888888888999977644
Q ss_pred ChhHHH------HHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 297 NVKALF------RQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 297 ~~~a~~------~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
-+..+. --|..+..-|+|++|..+|-+|++-.
T Consensus 224 IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 224 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 332221 12566788899999999999998864
No 402
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.07 E-value=8.3 Score=36.98 Aligned_cols=80 Identities=16% Similarity=0.048 Sum_probs=48.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHH
Q 019054 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (347)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~ 302 (347)
...|+.-.|-+....+|+ ..|..+.....++.++..+|.|+.|..+..-+=.+=....++.-
T Consensus 300 ~~~gd~~aas~~~~~~lr------------------~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~ 361 (831)
T PRK15180 300 LADGDIIAASQQLFAALR------------------NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLR 361 (831)
T ss_pred hhccCHHHHHHHHHHHHH------------------hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHH
Confidence 345677777777777777 55556666666778888888888887766554333223333333
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 019054 303 RQGQAYMALNDVDAAVES 320 (347)
Q Consensus 303 ~~g~~~~~~~~~~~A~~~ 320 (347)
-+-.....++++++|...
T Consensus 362 ~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 362 CRLRSLHGLARWREALST 379 (831)
T ss_pred HHHHhhhchhhHHHHHHH
Confidence 344444555555555443
No 403
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=79.54 E-value=6.6 Score=39.34 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=12.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESF 321 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~ 321 (347)
|++.+.+-.+|..+-..|--++|.+.|
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 444444444444444444444444443
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.05 E-value=11 Score=31.56 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
.+..++..++.++..| ++..+.+++.++..+|+.++|.+..+++..+.|.+.-
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~ 179 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADEF 179 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHH
Confidence 4455667777787777 7889999999999999999999999999999994443
No 405
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.50 E-value=73 Score=31.53 Aligned_cols=104 Identities=9% Similarity=-0.017 Sum_probs=78.8
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+......-.+.|+++.....|++++- --......|.+.+.-....|+.+-|-.....+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli------------------~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI------------------PCALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh------------------HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 3455555666678999999999999987 5566777888888888888888888877777777
Q ss_pred cC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 293 DG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 293 ~~-p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
+. |..+-.+..-+..-...|++..|...|++..+-.|+..++
T Consensus 360 i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 360 IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 64 5555566666666677789999999998888777765543
No 406
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.03 E-value=39 Score=28.12 Aligned_cols=101 Identities=13% Similarity=-0.059 Sum_probs=68.9
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH-
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA- 290 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a- 290 (347)
..+....|.....+|+-..|+..|..+-+-. ..-....-.+.+.-|..++-.|.|+....-.+..
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt--------------~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa 159 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADT--------------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA 159 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccC--------------CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhcc
Confidence 3455777888888999999999998876611 1111222344555666777788888876554332
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
-..+|-...+--.+|.+-++-|+|..|...|.....
T Consensus 160 ~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 160 GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 233444456667788899999999999999988776
No 407
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.14 E-value=4.9 Score=28.17 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=11.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhh
Q 019054 269 NSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 269 nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..|.-.-..|+|++|+..|..|++
T Consensus 11 ~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 11 TQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHhhHhhhHHHHHHHHHHHHH
Confidence 333344444555555555555443
No 408
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.96 E-value=5.4 Score=35.71 Aligned_cols=63 Identities=6% Similarity=0.066 Sum_probs=56.4
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
...+..++..+...++++.++...++.+. .+|..-.+|..+-..|++.|+...|+..|.+.-
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~------------------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE------------------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 45567778888899999999999999998 889999999999999999999999999998876
Q ss_pred h
Q 019054 292 R 292 (347)
Q Consensus 292 ~ 292 (347)
.
T Consensus 215 ~ 215 (280)
T COG3629 215 K 215 (280)
T ss_pred H
Confidence 5
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.31 E-value=9.4 Score=33.36 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=48.9
Q ss_pred HHHHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHH
Q 019054 212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDT 287 (347)
Q Consensus 212 a~~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~ 287 (347)
++-++.++...-. ..--+.|...|++|+.++.... ...+|....+.+|.+..|.. +++.++|+..+
T Consensus 123 gDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L----------~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia 192 (236)
T PF00244_consen 123 GDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL----------PPTHPLRLGLALNYSVFYYEILNDPEKAIEIA 192 (236)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS----------CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc----------CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4444444444422 2234778899999999776431 12677888888999888765 79999999999
Q ss_pred HHHhh
Q 019054 288 EFAMR 292 (347)
Q Consensus 288 ~~al~ 292 (347)
++|+.
T Consensus 193 ~~afd 197 (236)
T PF00244_consen 193 KQAFD 197 (236)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 410
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.74 E-value=26 Score=31.11 Aligned_cols=82 Identities=10% Similarity=0.041 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh-cC-----CHHHHHHHHHHHHhhCCCCHHHH
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA-LN-----DVDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~-~~-----~~~~A~~~~~~al~l~P~~~~~~ 335 (347)
.+..+|.-+--|....+.|+.-+.++.+.|+.|-.|-.||..|-.+... .| ..+.-+....+.+++.|+|..++
T Consensus 145 KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaW 224 (318)
T KOG0530|consen 145 KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAW 224 (318)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 3344555555555555555555555555555555444444443322222 11 12334445556666667777777
Q ss_pred HHHHHHHH
Q 019054 336 KELAVAKK 343 (347)
Q Consensus 336 ~~l~~~~~ 343 (347)
..|.-+.+
T Consensus 225 nYL~G~l~ 232 (318)
T KOG0530|consen 225 NYLKGLLE 232 (318)
T ss_pred HHHHHHHH
Confidence 77665554
No 411
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.30 E-value=32 Score=27.23 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=36.6
Q ss_pred HHHHHHHHH-HcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 267 FTNSSACKL-KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 267 ~~nla~~~~-~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
|..+|.-++ +.++-+.--..+....+-...+++.++.+|.||..+|+..+|.+.+.+|.+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 333444333 2333333333344444445567999999999999999999999999999875
No 412
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.82 E-value=3.9 Score=34.55 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=45.1
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~ 284 (347)
.+.-...+|. +|.+.+-++|+..|.++|++... .+..++.++..+|.+|+++++++.|=
T Consensus 140 t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~--------------~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALAT-YYTKRDPEKTIQLLLRALELSNP--------------DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3445556664 44578999999999999995431 22556889999999999999999883
No 413
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=73.21 E-value=16 Score=35.72 Aligned_cols=69 Identities=9% Similarity=-0.073 Sum_probs=61.2
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
.+|.+...|..+-.-+..+ .++++...|++.+...|..+.+|-......++.++|+.-...|.+||.-.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 7788888898886666555 99999999999999999999999999999999999999999999998653
No 414
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=73.05 E-value=6 Score=37.37 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=66.0
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
+...+.-.|||..|++..+.. ++ . ....-....+-....++.+|-||+-+++|.+|+..+..+|..-...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i-dl------~---~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI-DL------N---KKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc-Cc------c---cchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555678888888765322 10 0 0001112445567789999999999999999999999987421111
Q ss_pred hhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q 019054 298 VKALFRQGQAYMA-LNDVDAAVESFEKALKLEPN--DGGIKKELAV 340 (347)
Q Consensus 298 ~~a~~~~g~~~~~-~~~~~~A~~~~~~al~l~P~--~~~~~~~l~~ 340 (347)
-..+..+..-+.. .+..++....+--|+.+.|. +..+...+.+
T Consensus 198 k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lke 243 (404)
T PF10255_consen 198 KNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKE 243 (404)
T ss_pred hhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 1111222222222 34556666677777788885 5555555543
No 415
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.83 E-value=28 Score=36.79 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=75.3
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+...|+..|..+.|+.|.-.|...- -|..+|.....+|+|+.|++..++|-...
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vS--------------------------N~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVS--------------------------NFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 4667888888899988888886443 36678888899999999999988875332
Q ss_pred CC-------------------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 295 DD-------------------------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 295 p~-------------------------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
.- .+.-+-.+-.-|...|.|++-+..++.++-|.-.+-..-.+|+.+..
T Consensus 1251 tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 10 02223334455888999999999999999888777666666666543
No 416
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=72.80 E-value=38 Score=31.82 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH--cCChHHHHHHHH
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--LGDLKGALLDTE 288 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~A~~~~~ 288 (347)
...+..+|++++|..|...|..+++... + .........+.+++.+|.. .-++++|.+.++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l--------~-----~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLL--------S-----AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccc--------C-----hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4456678899999999999999987210 0 1133455667777777765 677889988888
No 417
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=72.44 E-value=2.8 Score=37.77 Aligned_cols=69 Identities=7% Similarity=0.077 Sum_probs=54.3
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHH-HHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN-SSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-la~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
...++-.-+.+-|.+-...|.+++. ..|.++++|.. -+.-+...++++.+...+.++|+++
T Consensus 111 ~~y~~Y~~k~k~y~~~~nI~~~~l~------------------khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 111 SQYAAYVIKKKMYGEMKNIFAECLT------------------KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------------------cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 3333344456788888889999998 88999998876 4455667899999999999999999
Q ss_pred CCChhHHH
Q 019054 295 DDNVKALF 302 (347)
Q Consensus 295 p~~~~a~~ 302 (347)
|++++.|+
T Consensus 173 ~~~p~iw~ 180 (435)
T COG5191 173 SRSPRIWI 180 (435)
T ss_pred CCCchHHH
Confidence 99976554
No 418
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=72.30 E-value=31 Score=31.70 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDG--DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
..-.|++.+..+..-...++...+....-. ..+-..+-.+|-.+.++|+.++|...|++++.+.++..+....+..+-
T Consensus 330 vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 330 VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 334688888877777777777766555431 234556777899999999999999999999999988777665555443
No 419
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.70 E-value=59 Score=30.68 Aligned_cols=63 Identities=19% Similarity=0.085 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN--DVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 279 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
..++-+.+...+|+.+|++.-+|+.|..++.... ++..-++.++++++.+|.|-..+..-.-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV 154 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV 154 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence 4666778888899999999999999999999876 47888999999999999887766654433
No 420
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.42 E-value=11 Score=20.49 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 019054 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (347)
Q Consensus 278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 306 (347)
|+++.|...|++++...|.+...|.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788999999999999988888877654
No 421
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=70.82 E-value=41 Score=26.13 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCC----C-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHh----h
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDD----N-----------VKALFRQGQAYMALNDVDAAVESFEKALK----L 327 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~----~-----------~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l 327 (347)
+.++|...++.+++-.++-+|++|+.+..+ + .-...++|.-+..+|+-+=.+++++-|-+ |
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888889999999999999999854211 1 23567899999999999999998876644 4
Q ss_pred CCC-----CHHHHHHHHHHHHH
Q 019054 328 EPN-----DGGIKKELAVAKKK 344 (347)
Q Consensus 328 ~P~-----~~~~~~~l~~~~~~ 344 (347)
-|+ .......|+-+++.
T Consensus 84 iPQCp~~~C~afi~sLGCCk~A 105 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKA 105 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHH
Confidence 554 23345555555443
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.69 E-value=49 Score=31.19 Aligned_cols=99 Identities=24% Similarity=0.197 Sum_probs=62.9
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHH--HcCChHHHHHHHHHH
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL--KLGDLKGALLDTEFA 290 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~l~~~~~A~~~~~~a 290 (347)
......+..+|+.++|..|.+.+...++.++ -... ...+..++.+|. -.-+|.+|.+.++..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~---------------~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLP---------------GREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------------chhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3445667788899999999999999887211 0011 345666666555 467788898888866
Q ss_pred hhcCCC-----------------------------C---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 291 MRDGDD-----------------------------N---------VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 291 l~~~p~-----------------------------~---------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+...-. . ..-++.-|.=....|+|+.|+.-+-+++++
T Consensus 196 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 196 LKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 542110 0 011222233334578899999888888887
No 423
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=70.16 E-value=41 Score=31.37 Aligned_cols=118 Identities=8% Similarity=0.032 Sum_probs=67.5
Q ss_pred HhhHHHHHHcCccccc---------hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC
Q 019054 209 MNAVDSIKVFGNEHYK---------KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD 279 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~---------~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~ 279 (347)
.+.+..++++|-.+.. ....+.|..+|++|...+.++...-.........+.+....++..++.+..+.=-
T Consensus 103 fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmLAQAQE~~ 182 (355)
T cd09241 103 FERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLMLAQAQECF 182 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455556665555533 2458889999999998888765431110011222555556666665554433222
Q ss_pred hH-----------------HHHHHHHHHhhc---C---CCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 280 LK-----------------GALLDTEFAMRD---G---DDN-------------VKALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 280 ~~-----------------~A~~~~~~al~~---~---p~~-------------~~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
|. ++..+|+.|... . +.. +-++|+.|......+++-+|+..++.
T Consensus 183 ~~Kai~~~~k~sliAKLa~qv~~~Y~~a~~~l~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~ 262 (355)
T cd09241 183 WQKAISDGTKDSLIAKLAAQVSDYYQEALKYANKSDLIRSDWINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRV 262 (355)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 22 223444444432 1 111 34677778877777888888888887
Q ss_pred HHh
Q 019054 324 ALK 326 (347)
Q Consensus 324 al~ 326 (347)
|+.
T Consensus 263 A~~ 265 (355)
T cd09241 263 ALA 265 (355)
T ss_pred HHH
Confidence 776
No 424
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=70.01 E-value=14 Score=35.19 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=76.0
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccc--------cC--C--CChhhhhhHHh----hHHHHHHHHHHHHHHc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE--------KE--G--IDEGKSSSLRK----TKSQIFTNSSACKLKL 277 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~--------~~--~--~~~~~~~~~~~----~~~~~~~nla~~~~~l 277 (347)
..+..|...+..+++.+++..++.||+....... +. + .+.+....... -...-+..++.|.
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl--- 109 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACL--- 109 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHH---
Confidence 4567888889999999999999999997653211 00 0 11111111111 1122233333333
Q ss_pred CChHHHHHHHHHHhhcCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 278 GDLKGALLDTEFAMRDGDDN----------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 278 ~~~~~A~~~~~~al~~~p~~----------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
.-|...+...+.+ -..|..+-.+|.+.|+...|++.-...+-.+|++..++.++.--+
T Consensus 110 -------~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 110 -------RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred -------HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHH
Confidence 2333333333222 267888899999999999999999999999999999999887655
No 425
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=69.23 E-value=58 Score=30.25 Aligned_cols=118 Identities=11% Similarity=0.045 Sum_probs=66.6
Q ss_pred HhhHHHHHHcCccccch---------hhHHHHHHHHHHHHHHhhhccccC--CCChhhhhhHHhhHHHHHHHHHHHHHHc
Q 019054 209 MNAVDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKE--GIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (347)
.+.+..++++|-.+... ...+.|..+|++|.-.+.++...- .........+.+....++..+..+..+.
T Consensus 116 fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQE 195 (346)
T cd09240 116 YEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKETVLSALQQEPTPDLSPDTLSALSALMLAQAQE 195 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555566665554332 236889999999988887654421 1111112235555555555555444433
Q ss_pred CChHHH-----------------HHHHHHHhhc---------CCCC-------------hhHHHHHHHHHHhcCCHHHHH
Q 019054 278 GDLKGA-----------------LLDTEFAMRD---------GDDN-------------VKALFRQGQAYMALNDVDAAV 318 (347)
Q Consensus 278 ~~~~~A-----------------~~~~~~al~~---------~p~~-------------~~a~~~~g~~~~~~~~~~~A~ 318 (347)
=-|.+| ..+|+.|... -|.. +.++|+.|......+++-+|+
T Consensus 196 ~~~~Kai~~~~k~~liAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~GeaI 275 (346)
T cd09240 196 VFYLKATRDKMKDAIIAKLAAQAADYYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEEI 275 (346)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence 222222 3334444321 1111 346778888888888999999
Q ss_pred HHHHHHHh
Q 019054 319 ESFEKALK 326 (347)
Q Consensus 319 ~~~~~al~ 326 (347)
..++.|..
T Consensus 276 a~L~~A~~ 283 (346)
T cd09240 276 ARLQHALE 283 (346)
T ss_pred HHHHHHHH
Confidence 98887766
No 426
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.09 E-value=14 Score=33.13 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
.+.+...+..|...|.+.+|+...++++.++|-+.+..+.|..+...+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~ 326 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATL 326 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh
Confidence 355666788899999999999999999999999888888777665544
No 427
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.58 E-value=46 Score=32.49 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc---CCCC----hhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCC
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAMRD---GDDN----VKALFRQGQAYMALND-VDAAVESFEKALKLEPN 330 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al~~---~p~~----~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~P~ 330 (347)
-++-+|.+...+|+...|..++..+++. ...+ +-|+|-+|..|..++. ..+|.+.+.+|.+...+
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 4566899999999999999999988832 2222 6799999999999999 99999999999988743
No 428
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=68.38 E-value=49 Score=30.49 Aligned_cols=115 Identities=22% Similarity=0.286 Sum_probs=74.9
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHH--HHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG--ALLDTEF 289 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~--A~~~~~~ 289 (347)
+..-...|-.+...++|..|..+|-.|.+=+... + .+..-...+--+-.|-.-++..++ ++-....
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~------~------~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~ 276 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL------D------DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL 276 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHcccccc------C------CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence 3344667888888899999999998888733211 1 111222223333344445555555 4555566
Q ss_pred HhhcCCCChhHHHHHHHHHHh--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMA--LNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~--~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
+++.+.....|+...+.++.. +.+|+.|+..|+.-+.-+| -++.-+..+
T Consensus 277 ~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~L 327 (411)
T KOG1463|consen 277 ALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSL 327 (411)
T ss_pred HHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHH
Confidence 788777889999999998876 4689999999998877655 444444433
No 429
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=67.95 E-value=11 Score=26.44 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=5.1
Q ss_pred CCHHHHHHHHHHH
Q 019054 312 NDVDAAVESFEKA 324 (347)
Q Consensus 312 ~~~~~A~~~~~~a 324 (347)
|+|++|+..|..+
T Consensus 20 g~y~eA~~lY~~a 32 (75)
T cd02684 20 GDAAAALSLYCSA 32 (75)
T ss_pred ccHHHHHHHHHHH
Confidence 3444433333333
No 430
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=67.63 E-value=35 Score=34.76 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 299 KALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 299 ~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
..|-..+.-|..+|+|+-|.+.|-+
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHh
Confidence 3444567777777888777766544
No 431
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=67.62 E-value=45 Score=32.34 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHhhcCCCChhHH
Q 019054 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEFAMRDGDDNVKAL 301 (347)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A~~~~~~al~~~p~~~~a~ 301 (347)
.+.|.+-...|.+++. ..|.++.+|.--|.-.+..+. .+.|...+.++|+.+|++++.|
T Consensus 118 ~~~~~~v~ki~~~~l~------------------~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 118 KKTYGEVKKIFAAMLA------------------KHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred hcchhHHHHHHHHHHH------------------hCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 3447888888999998 899999999988888887766 9999999999999999996544
No 432
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=67.26 E-value=75 Score=29.63 Aligned_cols=119 Identities=14% Similarity=0.084 Sum_probs=68.9
Q ss_pred HHhhHHHHHHcCccccc------------hhhHHHHHHHHHHHHHHhhhcccc--CCCC--hhhhhhHHhhHHHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYK------------KQDYKMALRKYRKALRYLDICWEK--EGID--EGKSSSLRKTKSQIFTNSS 271 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~------------~g~y~~A~~~y~~al~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~nla 271 (347)
..+.+..++++|..+.+ .....+|..+|++|--++.++... +... .+....+.+....++.+++
T Consensus 105 ~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~p~~DL~~~~L~aL~~lm 184 (353)
T cd09243 105 IFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQFVKENYIPKLIEPAEKGSDLDPRVLEAYINQC 184 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCHHHHHHHHHHH
Confidence 34455566666665532 134778888899988888765442 1111 1122335566666666555
Q ss_pred HHHHHcCChHHH-----------------HHHHHHHhhc----CC---CC-------------hhHHHHHHHHHHhcCCH
Q 019054 272 ACKLKLGDLKGA-----------------LLDTEFAMRD----GD---DN-------------VKALFRQGQAYMALNDV 314 (347)
Q Consensus 272 ~~~~~l~~~~~A-----------------~~~~~~al~~----~p---~~-------------~~a~~~~g~~~~~~~~~ 314 (347)
.+..+-=-+.+| ..+|++|... .+ .. +.++|+.|..+...+++
T Consensus 185 LAQAQE~~~~KAi~~k~k~sliaKLA~q~a~~Y~~A~~~l~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~ 264 (353)
T cd09243 185 TAEAQEVTVARAIELKHNAGLISALAYETAKLFQKADDSLSSLDPEYSGKWRKYLQLKSVFYLAYAYCYHGETLLAKDKC 264 (353)
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcchH
Confidence 544433223333 3445555432 11 11 34788888888888899
Q ss_pred HHHHHHHHHHHh
Q 019054 315 DAAVESFEKALK 326 (347)
Q Consensus 315 ~~A~~~~~~al~ 326 (347)
-+|+..++.|.+
T Consensus 265 GeaIa~L~~A~~ 276 (353)
T cd09243 265 GEAIRSLQESEK 276 (353)
T ss_pred HHHHHHHHHHHH
Confidence 999998887765
No 433
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.24 E-value=14 Score=25.15 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 019054 308 YMALNDVDAAVESFEKALK 326 (347)
Q Consensus 308 ~~~~~~~~~A~~~~~~al~ 326 (347)
....|++++|+..|.++++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3344555555555444443
No 434
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=67.20 E-value=79 Score=33.63 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChh-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK-------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~-------a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
-=|..-|.+|.++++|++-+..+.-|++..|..+. ..||+-.+.+. +...|....--++...|..-..
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccc
Confidence 34888899999999999999999999999988753 45666666554 4556888888899999975443
No 435
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.81 E-value=74 Score=27.58 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=70.3
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChh-
Q 019054 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK- 299 (347)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~- 299 (347)
.+.+.++..+|+...+.-++ ..|.+......+=..+.-.|+|++|...|+-+-++.|.+.+
T Consensus 10 eLL~~~sL~dai~~a~~qVk------------------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVK------------------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHhccHHHHHHHHHHHHh------------------cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 45567788899988888888 66777777777777888899999999999999999998743
Q ss_pred H--HHHHHHH--HHh-----------cC-CHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Q 019054 300 A--LFRQGQA--YMA-----------LN-DVDAAVESFEKALKLEPN-DGGIKKELAV 340 (347)
Q Consensus 300 a--~~~~g~~--~~~-----------~~-~~~~A~~~~~~al~l~P~-~~~~~~~l~~ 340 (347)
+ |..+-.| ... +| ...+=+..+..++.++.+ ..++...+++
T Consensus 72 a~lyr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alre 129 (273)
T COG4455 72 ASLYRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALRE 129 (273)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHH
Confidence 2 2221111 111 23 556666777888888765 4454444443
No 436
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=66.54 E-value=65 Score=30.14 Aligned_cols=118 Identities=12% Similarity=0.016 Sum_probs=66.6
Q ss_pred HHhhHHHHHHcCcccc---------chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC
Q 019054 208 WMNAVDSIKVFGNEHY---------KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~---------~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~ 278 (347)
..+.+..++++|-.+. .....+.|..+|++|..++.++.... .......+++....++.+++.+..+.-
T Consensus 103 ~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~--~~~~s~Dl~~~~l~~l~~l~lAqAQe~ 180 (377)
T PF03097_consen 103 AFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENF--KDSPSPDLSPEVLSALSNLMLAQAQEC 180 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHS--SS-SSGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhh--cccCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3344555555554443 34568889999999999888765441 111111256666666666654444332
Q ss_pred ChH-----------------HHHHHHHHHhhc---C------CCC-------------hhHHHHHHHHHHhcCCHHHHHH
Q 019054 279 DLK-----------------GALLDTEFAMRD---G------DDN-------------VKALFRQGQAYMALNDVDAAVE 319 (347)
Q Consensus 279 ~~~-----------------~A~~~~~~al~~---~------p~~-------------~~a~~~~g~~~~~~~~~~~A~~ 319 (347)
-+. ++...|+.|... . |.. +.++|..|......+++-+|+.
T Consensus 181 ~~~ka~~~~~~~~liAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia 260 (377)
T PF03097_consen 181 FYEKAIADKKKPSLIAKLAAQASELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIA 260 (377)
T ss_dssp HHHHHHHTTG-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 222 233344444321 1 111 3477778888888888888888
Q ss_pred HHHHHHhh
Q 019054 320 SFEKALKL 327 (347)
Q Consensus 320 ~~~~al~l 327 (347)
.++.|...
T Consensus 261 ~L~~A~~~ 268 (377)
T PF03097_consen 261 RLRRAEEA 268 (377)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 437
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.49 E-value=11 Score=36.23 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=44.3
Q ss_pred hhhHHHHHHH--HHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh--------cC
Q 019054 225 KQDYKMALRK--YRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--------DG 294 (347)
Q Consensus 225 ~g~y~~A~~~--y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~--------~~ 294 (347)
.-+|+-|++. ++.|++++... .....|..+|...+..|+++-|...++++-. .-
T Consensus 322 ~~rFeLAl~lg~L~~A~~~a~~~----------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~ 385 (443)
T PF04053_consen 322 DHRFELALQLGNLDIALEIAKEL----------------DDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSS 385 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHCCCC----------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHhHHHHhcCCHHHHHHHHHhc----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHH
Confidence 4455666654 55566544322 2344788888888888888888888877532 22
Q ss_pred CCChhHHHHHHHHHHhcCCHHHH
Q 019054 295 DDNVKALFRQGQAYMALNDVDAA 317 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A 317 (347)
-.+.+.+-.++..-...|++.-|
T Consensus 386 ~g~~~~L~kl~~~a~~~~~~n~a 408 (443)
T PF04053_consen 386 TGDREKLSKLAKIAEERGDINIA 408 (443)
T ss_dssp CT-HHHHHHHHHHHHHTT-HHHH
T ss_pred hCCHHHHHHHHHHHHHccCHHHH
Confidence 33444555555555545544444
No 438
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.82 E-value=22 Score=32.25 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=30.2
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (347)
+..|..+...+...-+.++|++|+.+|+.|++|+...
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~ 43 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHA 43 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHH
Confidence 4456677777777788999999999999999988654
No 439
>PF15469 Sec5: Exocyst complex component Sec5
Probab=65.79 E-value=12 Score=31.13 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.4
Q ss_pred cchhhHHHHHHHHHHHHHHh
Q 019054 223 YKKQDYKMALRKYRKALRYL 242 (347)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~ 242 (347)
.++|+|+.|+..|.+|-.++
T Consensus 97 i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHH
Confidence 46899999999999998854
No 440
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=65.78 E-value=58 Score=31.06 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=65.9
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh-------HHHHHH
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-------KGALLD 286 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~-------~~A~~~ 286 (347)
.++.+|..+|-.++|+.|...|+.+.+-+. ..+.....+.++.-.|.|.+..+.. ++...+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~------------~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~ 277 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK------------NDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPY 277 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh------------hchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHH
Confidence 467789999999999999999999987331 0112223344555566666666533 133334
Q ss_pred HHHHhh-----------cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 287 TEFAMR-----------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 287 ~~~al~-----------~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
++.|+. ...-...+....+.++..++.+.+|...+-+....
T Consensus 278 le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 278 LENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 444332 11233567788888888999988887776666655
No 441
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.54 E-value=1.1e+02 Score=30.48 Aligned_cols=87 Identities=14% Similarity=0.004 Sum_probs=53.6
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc-cCCCChhhh-----hhHHhhHHHHHHHHHHHHHHcCChHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-KEGIDEGKS-----SSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~nla~~~~~l~~~~~A~~ 285 (347)
+..+..++...-.+|+.+.|....+++|=.+..+.. .-.+....+ ...+.....+++..-.-..+.|.|..|.+
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 344566666666778888888888887766654321 111111110 01222333444444566668899999999
Q ss_pred HHHHHhhcCCC-Ch
Q 019054 286 DTEFAMRDGDD-NV 298 (347)
Q Consensus 286 ~~~~al~~~p~-~~ 298 (347)
+|.-.+.++|. ++
T Consensus 364 ~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 364 WCKLLLSLDPSEDP 377 (665)
T ss_pred HHHHHhhcCCcCCc
Confidence 99999999998 53
No 442
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=65.14 E-value=1.2e+02 Score=28.49 Aligned_cols=119 Identities=12% Similarity=0.029 Sum_probs=67.8
Q ss_pred HHHhhHHHHHHcCccccchh---------hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc
Q 019054 207 WWMNAVDSIKVFGNEHYKKQ---------DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (347)
Q Consensus 207 ~~~~~a~~~~~~g~~~~~~g---------~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (347)
...+.+..++++|-.+.+.+ ..+.|..+|+.|--.+.++...-..... ...+++....++..+..+..+.
T Consensus 109 l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~-~~Dl~~~~l~~L~~lmLAQAQE 187 (361)
T cd09239 109 IKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYG-AVDMSSQLLSFNYSLMLAQAQE 187 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCC-cccCCHHHHHHHHHHHHHHHHH
Confidence 34556777777776665433 4788999999988877665432111100 0135555555555554444332
Q ss_pred CChHH-----------------HHHHHHHHhhc------C--------CCC-------------hhHHHHHHHHHHhcCC
Q 019054 278 GDLKG-----------------ALLDTEFAMRD------G--------DDN-------------VKALFRQGQAYMALND 313 (347)
Q Consensus 278 ~~~~~-----------------A~~~~~~al~~------~--------p~~-------------~~a~~~~g~~~~~~~~ 313 (347)
=-|.+ +..+|++|.+. + +.. +.++|+.|......++
T Consensus 188 c~~~Kai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k 267 (361)
T cd09239 188 CLLEKSLLDNRKSHITAKVSAQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQK 267 (361)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22222 23344444432 1 111 2366777877777788
Q ss_pred HHHHHHHHHHHHh
Q 019054 314 VDAAVESFEKALK 326 (347)
Q Consensus 314 ~~~A~~~~~~al~ 326 (347)
+-+++..++.|..
T Consensus 268 ~Ge~Ia~L~~A~~ 280 (361)
T cd09239 268 MGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887766
No 443
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=64.95 E-value=78 Score=26.63 Aligned_cols=82 Identities=21% Similarity=0.107 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-----C--ChHHHHHHHHHHhhcCCCC
Q 019054 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-----G--DLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-----~--~~~~A~~~~~~al~~~p~~ 297 (347)
.++...|++.|..+-. ...+.+..++|.++..- . +..+|++++++|..+. +
T Consensus 86 ~~~l~~a~r~~~~aC~--------------------~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~ 143 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACD--------------------ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--D 143 (248)
T ss_pred ccCHHHHHHHHHHHhc--------------------cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--C
Confidence 4567788888877744 34556667777666532 2 2678888888888775 3
Q ss_pred hhHHHHHHHHHHh------------------------cCCHHHHHHHHHHHHhhC
Q 019054 298 VKALFRQGQAYMA------------------------LNDVDAAVESFEKALKLE 328 (347)
Q Consensus 298 ~~a~~~~g~~~~~------------------------~~~~~~A~~~~~~al~l~ 328 (347)
..+-+.+.-.|+. +++.+.|.+.-.+|.++.
T Consensus 144 ~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 144 GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 4444444444333 356667777777776664
No 444
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.53 E-value=54 Score=31.75 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+-+.+..+.+-.+..++-++-.-+.--+.+.+|.+|++++++.-+.+.....+...+..|--.
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (831)
T PRK15180 760 EHLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCITA 822 (831)
T ss_pred hhHhhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHH
Confidence 446677778888889998988888888999999999999999999886655565555555433
No 445
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=63.41 E-value=19 Score=20.00 Aligned_cols=27 Identities=19% Similarity=-0.023 Sum_probs=17.9
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHH
Q 019054 283 ALLDTEFAMRDGDDNVKALFRQGQAYM 309 (347)
Q Consensus 283 A~~~~~~al~~~p~~~~a~~~~g~~~~ 309 (347)
.+..+.+++..+|.+..+|..|-.+..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHH
Confidence 356667777777777777766655544
No 446
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=63.09 E-value=12 Score=33.00 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054 279 DLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 279 ~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 332 (347)
....|.++++.||-+.... .-+.++++.+|+.+.+|+.|..+|.+|+.+.-++.
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~ 113 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDT 113 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 4567888888888554321 45789999999999999999999999999865433
No 447
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=63.06 E-value=17 Score=25.60 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
-+...|.-+-+.|+|++|+.+|.++|
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555555555555555555444
No 448
>PF12854 PPR_1: PPR repeat
Probab=62.71 E-value=22 Score=20.34 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFE 322 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~ 322 (347)
.-.|..+-.+|.+.|+.++|.+.|+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344445555555666666655554
No 449
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=62.38 E-value=11 Score=26.47 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHHh
Q 019054 312 NDVDAAVESFEKALK 326 (347)
Q Consensus 312 ~~~~~A~~~~~~al~ 326 (347)
|+|++|..+|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444433
No 450
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=62.14 E-value=78 Score=29.21 Aligned_cols=103 Identities=18% Similarity=0.146 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccCC--CChhhhhhHHhhHHHHHHHHHHHHHHcCChH------------------HHH
Q 019054 225 KQDYKMALRKYRKALRYLDICWEKEG--IDEGKSSSLRKTKSQIFTNSSACKLKLGDLK------------------GAL 284 (347)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~------------------~A~ 284 (347)
....+.|..++++|...+.++...-. ........+.+....++..++.+..+.--+. ++.
T Consensus 134 ~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~~~~~~~~liakLa~~~~ 213 (345)
T cd09034 134 EEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARLACEAA 213 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 35688899999999988887643211 1111222355555566655554444332222 333
Q ss_pred HHHHHHhhc----CC-------C-------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 285 LDTEFAMRD----GD-------D-------------NVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 285 ~~~~~al~~----~p-------~-------------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.+|+.|.+. .. . .+-++|..|..+...+++-+|+..++.|...
T Consensus 214 ~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 214 KYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 444444432 11 1 1347778888888888999999988888764
No 451
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=62.05 E-value=19 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=11.7
Q ss_pred HHHHHHcCChHHHHHHHHHHh
Q 019054 271 SACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 271 a~~~~~l~~~~~A~~~~~~al 291 (347)
|..+-..|+.+.|+.+|++++
T Consensus 15 aL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 15 ALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HhhhhhcCCHHHHHHHHHHHH
Confidence 333344466666666666655
No 452
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.15 E-value=29 Score=30.95 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=42.2
Q ss_pred HcCChHHHHHHHHHHhhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 276 KLGDLKGALLDTEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 276 ~l~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
+-.++++|+.-|++++++.+.- .+|+-.+-.+++.+++|++-...|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3457999999999999998765 47888888899999999888877776654
No 453
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.58 E-value=39 Score=32.18 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=70.2
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh---HHH---H
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL---KGA---L 284 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~---~~A---~ 284 (347)
.+--+...|..++++..|.+|+..+..|=+++-.+.++ -...-.+.+.+..-+-.||+.+++. +.| +
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k-------lLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK-------LLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH-------HHHhhcchhhhhcchhheehhhcccccCChHHHHH
Confidence 34567888999999999999999988887766544211 0113334445555667888887762 233 2
Q ss_pred HHHHHHh------------hcC-CCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 285 LDTEFAM------------RDG-DDNV------KALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 285 ~~~~~al------------~~~-p~~~------~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
..|++-+ .+. +..+ ..+...|...+++|+-++|.++++.|...
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2333322 221 2222 23445689999999999999999888654
No 454
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.51 E-value=34 Score=28.44 Aligned_cols=51 Identities=10% Similarity=-0.014 Sum_probs=43.0
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA 310 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 310 (347)
-+|....+...||.+.++.|++.+|...|.+... |...+....+|+++.+.
T Consensus 162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 5677888899999999999999999999998877 66667777888877654
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=60.34 E-value=1e+02 Score=25.98 Aligned_cols=100 Identities=11% Similarity=-0.004 Sum_probs=63.2
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
....+...+..+..+|++++|...+.+|.+.+.++.. .-... ..++.-|.|--.+..|-+|...+.-.
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~-----------~l~~~-pel~~ag~~~~a~QEyvEA~~l~~~l 95 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKR-----------LLAGF-PELYFAGFVTTALQEYVEATLLYSIL 95 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----------HHhhh-HHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444555666677899999999999999886554311 11112 23445566777788899998887766
Q ss_pred hhcCCCC------hhHHHHHH------------HHHHhcCCHHHHHHHHH
Q 019054 291 MRDGDDN------VKALFRQG------------QAYMALNDVDAAVESFE 322 (347)
Q Consensus 291 l~~~p~~------~~a~~~~g------------~~~~~~~~~~~A~~~~~ 322 (347)
-.-.-.+ +...|-+| .-....|++++|...++
T Consensus 96 ~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~ 145 (204)
T COG2178 96 KDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLK 145 (204)
T ss_pred hcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5433222 12334433 34667899999987654
No 456
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=59.92 E-value=22 Score=20.51 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHhh
Q 019054 313 DVDAAVESFEKALKL 327 (347)
Q Consensus 313 ~~~~A~~~~~~al~l 327 (347)
++++|..+|++|.+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 356666666666553
No 457
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=59.30 E-value=59 Score=24.40 Aligned_cols=50 Identities=20% Similarity=0.058 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcC
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN 312 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~ 312 (347)
........|...+..|+|+.|.....++-+..+...-.|..-+++-..+|
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 33444555666666677777777777776554444445554555554444
No 458
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=58.25 E-value=17 Score=25.30 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+...|..+-+.|++++|+.+|..++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555544
No 459
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=57.64 E-value=29 Score=19.46 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=14.8
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q 019054 300 ALFRQGQAYMA----LNDVDAAVESFEKALKL 327 (347)
Q Consensus 300 a~~~~g~~~~~----~~~~~~A~~~~~~al~l 327 (347)
+.+.+|..|.. ..+..+|...|+++.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 44555555543 12566666666665543
No 460
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=57.55 E-value=38 Score=29.74 Aligned_cols=71 Identities=14% Similarity=-0.011 Sum_probs=47.6
Q ss_pred HHHHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHH
Q 019054 212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDT 287 (347)
Q Consensus 212 a~~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~ 287 (347)
++-++.++..... ..--+.|...|++|+.++... ....+|....+.+|.+..|.. +++.++|+..+
T Consensus 125 GDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~----------L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lA 194 (244)
T smart00101 125 GDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAE----------LPPTHPIRLGLALNFSVFYYEILNSPDRACNLA 194 (244)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHcc----------CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444444322 222567889999999865431 112567777888888888876 59999999888
Q ss_pred HHHhh
Q 019054 288 EFAMR 292 (347)
Q Consensus 288 ~~al~ 292 (347)
.+|+.
T Consensus 195 k~afd 199 (244)
T smart00101 195 KQAFD 199 (244)
T ss_pred HHHHH
Confidence 87763
No 461
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.47 E-value=50 Score=34.31 Aligned_cols=83 Identities=17% Similarity=0.067 Sum_probs=65.0
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD- 296 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~- 296 (347)
.|.+...+++.++|++.-+.++..+... .......++.+.|.+.+-.|++.+|+.+...+.++...
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~L~~~-------------~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQLPEA-------------AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccc-------------cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 3456667889999999999999866543 44566788999999999999999999999888876321
Q ss_pred -----ChhHHHHHHHHHHhcCC
Q 019054 297 -----NVKALFRQGQAYMALND 313 (347)
Q Consensus 297 -----~~~a~~~~g~~~~~~~~ 313 (347)
...+.+..+.++..+|+
T Consensus 531 ~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 531 DVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred ccHHHHHHHHHHHHHHHHHhhH
Confidence 24566777888889993
No 462
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.96 E-value=19 Score=19.30 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
|..+-.+|.+.|++++|...+++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455555555555555555443
No 463
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.96 E-value=46 Score=33.08 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=15.9
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHH
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALR 240 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~ 240 (347)
..++.+|+.+.+++++..|.+++.+|-.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3455556555666666666666555544
No 464
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.64 E-value=1.7e+02 Score=27.13 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhhhcccc-------CCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC--h
Q 019054 228 YKMALRKYRKALRYLDICWEK-------EGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN--V 298 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~--~ 298 (347)
..+|...+.+||+..+..... ...-+...........-+-..+|.|..++|+..+|+..++...+-.|-. .
T Consensus 232 i~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~l 311 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTML 311 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHH
Confidence 456777777777755432211 1111111111112223344678999999999999999998887766632 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054 299 KALFRQGQAYMALNDVDAAVESFEKA 324 (347)
Q Consensus 299 ~a~~~~g~~~~~~~~~~~A~~~~~~a 324 (347)
..+-++-.++..+.-|..-...+-+.
T Consensus 312 niheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 312 NIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555554444444333
No 465
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=56.62 E-value=90 Score=30.85 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCC--hHHHHHHHHHHhhc-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CC
Q 019054 263 KSQIFTNSSACKLKLGD--LKGALLDTEFAMRD-----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EP 329 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~--~~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l------~P 329 (347)
.+.++.|||.+---.-. -..++..|.+||.. +....-.|..+|-.|++.++|.+|++.+..|-.. .-
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~r 355 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSR 355 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--G
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCc
Q ss_pred CCHHHHHHHHHHHHHh
Q 019054 330 NDGGIKKELAVAKKKV 345 (347)
Q Consensus 330 ~~~~~~~~l~~~~~~~ 345 (347)
+|.++.+++-.+-..+
T Consensus 356 eDeEiYKEfleIAneL 371 (618)
T PF05053_consen 356 EDEEIYKEFLEIANEL 371 (618)
T ss_dssp GGHHHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHHHHHH
No 466
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=56.61 E-value=1e+02 Score=28.69 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=65.1
Q ss_pred hhHHHHHHcCccccc---------hhhHHHHHHHHHHHHHHhhhcccc--CCCChhhhhhHHhhHHHHHHHHHHHHHHcC
Q 019054 210 NAVDSIKVFGNEHYK---------KQDYKMALRKYRKALRYLDICWEK--EGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~---------~g~y~~A~~~y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~l~ 278 (347)
+.+..++++|-.+.. ....++|..+|++|--.+.++... ..........+.+....++..+..+..+.=
T Consensus 109 Eka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQE~ 188 (353)
T cd09246 109 EKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHLRDKVSGKTGGFRTPDLTAECLGMLESLMLAQAQEC 188 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345555555544422 335888999999998888765432 111011122355555555555544443322
Q ss_pred ChHHH-----------------HHHHHHHhhc---C------CCC-------------hhHHHHHHHHHHhcCCHHHHHH
Q 019054 279 DLKGA-----------------LLDTEFAMRD---G------DDN-------------VKALFRQGQAYMALNDVDAAVE 319 (347)
Q Consensus 279 ~~~~A-----------------~~~~~~al~~---~------p~~-------------~~a~~~~g~~~~~~~~~~~A~~ 319 (347)
-|.+| ..+|+.|.+. . +.. +.++|+.|......+++-+|+.
T Consensus 189 ~~~Ka~~~~~k~sliAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~A~A~~~~a~~~~~~~k~GeaIa 268 (353)
T cd09246 189 FYEKAVADGKSPAVCSKLAKQARSYYEEALEALDSPPLKGHFDKSWVAHVQLKAAYFRAEALYRAAKDLHEKEDIGEEIA 268 (353)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcchHHHHH
Confidence 22222 2344444321 1 111 3467888888888889999999
Q ss_pred HHHHHHh
Q 019054 320 SFEKALK 326 (347)
Q Consensus 320 ~~~~al~ 326 (347)
.++.|..
T Consensus 269 ~L~~A~~ 275 (353)
T cd09246 269 RLRAASD 275 (353)
T ss_pred HHHHHHH
Confidence 8888765
No 467
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.55 E-value=1e+02 Score=27.32 Aligned_cols=97 Identities=6% Similarity=-0.116 Sum_probs=47.1
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH-HHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK-GALLDTEFA 290 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~-~A~~~~~~a 290 (347)
.+.+..-+..+++.+++..|.+.-.-.++.+... ..+......-++..+......-+ +-....++|
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~-------------~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~a 76 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKS-------------EDPVDEESIARLIELISLFPPEEPERKKFIKAA 76 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-------------T---SHHHHHHHHHHHHHS-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-------------CCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 3445555666677778877776654444433221 11111122234444444443221 122222333
Q ss_pred hh------cCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 019054 291 MR------DGDDNVKALFRQGQAYMALNDVDAAVESF 321 (347)
Q Consensus 291 l~------~~p~~~~a~~~~g~~~~~~~~~~~A~~~~ 321 (347)
++ -.-.+++.+..+|..|...+++.+|...|
T Consensus 77 i~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 77 IKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 32 11235778888888888888888887766
No 468
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.76 E-value=48 Score=32.37 Aligned_cols=96 Identities=10% Similarity=0.050 Sum_probs=66.1
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+.-+...+..+...|+-+.|+..++.++. . .+.+....+++.+|.++.-+.+|..|-.++....
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~-~---------------~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIP-I---------------RMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhccc-H---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455556666666777888888888876 1 2677788899999999999999999999998888
Q ss_pred hcCCCChhHHHHH--HHHHHh--------cCCHHHHHHHHHHH
Q 019054 292 RDGDDNVKALFRQ--GQAYMA--------LNDVDAAVESFEKA 324 (347)
Q Consensus 292 ~~~p~~~~a~~~~--g~~~~~--------~~~~~~A~~~~~~a 324 (347)
... +..+|+|.. |.|++. .++-+.|...++..
T Consensus 331 des-dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~ 372 (546)
T KOG3783|consen 331 DES-DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVG 372 (546)
T ss_pred hhh-hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHH
Confidence 776 345554443 344432 34555555544444
No 469
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=55.26 E-value=22 Score=34.30 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=45.5
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHH
Q 019054 272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE--------PNDGGIKKELAVA 341 (347)
Q Consensus 272 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--------P~~~~~~~~l~~~ 341 (347)
...+++|+.+.|.+.+ ...++...|-++|.+....|+++-|.++|+++-.++ -.+.+-...|+..
T Consensus 326 eLAl~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 326 ELALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHH
Confidence 3446889999987754 233478899999999999999999999998864442 3455555554433
No 470
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.76 E-value=1e+02 Score=32.98 Aligned_cols=105 Identities=15% Similarity=0.094 Sum_probs=71.2
Q ss_pred HcCccccchhhHHHHHHHHHHH------HHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 217 VFGNEHYKKQDYKMALRKYRKA------LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~a------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
..|+.....+-|++|...|.+. +..+-+- ...++....-...-..+..|..+|.+.+..+...+|++.|-+|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~--i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN--IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH--hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 3567777788888888877543 3221110 0111221111223345678999999999999999999988554
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
+++..|...-.+-...|.|++-++++.-|.+..
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 567778888888889999999999888776653
No 471
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=53.98 E-value=27 Score=26.23 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=28.2
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~ 240 (347)
..+.+......|-..+-.|+|+.|.+...++-+
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~ 87 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAK 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344677788889999999999999999999976
No 472
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.41 E-value=79 Score=36.62 Aligned_cols=102 Identities=12% Similarity=0.013 Sum_probs=63.0
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+.-+.+.|....+.|+++.|....-+|.+ .. .+.++..+|......|+-..|+...++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e------------------~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKE------------------SR--LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhh------------------cc--cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34455566666667777777777666655 22 55677777888888888888888888877
Q ss_pred hcCCCC-----------------hhHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHH
Q 019054 292 RDGDDN-----------------VKALFRQGQAYMALNDVD--AAVESFEKALKLEPNDGG 333 (347)
Q Consensus 292 ~~~p~~-----------------~~a~~~~g~~~~~~~~~~--~A~~~~~~al~l~P~~~~ 333 (347)
+.+-.+ .++.+..+.-....++++ +-++.|+.+.++.|....
T Consensus 1730 ~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1730 SKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWED 1790 (2382)
T ss_pred HhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccC
Confidence 543211 234444444444455533 345667777777774333
No 473
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=53.30 E-value=24 Score=24.44 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+...|.-.-+.|++++|+.+|..++
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEAL 33 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555566666655555554
No 474
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.70 E-value=2e+02 Score=26.50 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=57.8
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC------C--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh--hC
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD------N--VKALFRQGQAYMALNDVDAAVESFEKALK--LE 328 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~------~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~ 328 (347)
.......+...+|..|-+-++|..|...+. ++.++.. . ...+.++|.+|...++-.+|..+..++-- -+
T Consensus 98 feEqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~ 176 (399)
T KOG1497|consen 98 FEEQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE 176 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence 344556778888999999999988866542 3333321 1 23567789999999999888888887743 34
Q ss_pred CCCHHHHHHHHHHHHH
Q 019054 329 PNDGGIKKELAVAKKK 344 (347)
Q Consensus 329 P~~~~~~~~l~~~~~~ 344 (347)
..|+++.-....|..+
T Consensus 177 ~~Ne~Lqie~kvc~AR 192 (399)
T KOG1497|consen 177 SSNEQLQIEYKVCYAR 192 (399)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4677777766666543
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.50 E-value=1.5e+02 Score=24.96 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=37.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 019054 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVES 320 (347)
Q Consensus 269 nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~ 320 (347)
..-.++++.|.|++|.+.+++... +|++.+.-..+..+-.....|..-++.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqn 166 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQN 166 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHh
Confidence 345678899999999999999998 888877766666665555555544443
No 476
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.98 E-value=32 Score=31.85 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=49.7
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~ 285 (347)
.-+.+..+...|+.++..++|++|...|..|..+..+.. -........+++..|..++++++...++.
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~----------Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY----------GEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334677889999999999999999999999998654321 11233455667777888888777766544
No 477
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.93 E-value=65 Score=32.79 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=44.6
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 271 a~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
....+..++++.+..++...-..........|.+|.++..+|+.++|...|+++..
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33455788998888777775444445688999999999999999999999999854
No 478
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.78 E-value=69 Score=31.01 Aligned_cols=55 Identities=16% Similarity=-0.022 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~ 319 (347)
.-..++|.-.+..|+|.-+.+..++++-.+|.+..|-...+.++.++|--.|+..
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~ 507 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESAT 507 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccch
Confidence 3357788888999999999999999999999999999999999999997766543
No 479
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.30 E-value=1.9e+02 Score=26.01 Aligned_cols=114 Identities=14% Similarity=0.078 Sum_probs=68.3
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
.+..++-..||..|++..+++++.+......+ +...........+..--=+++.++++|.+++.+..+-...-.+-
T Consensus 41 Aad~LvV~rdF~aal~tCerglqsL~~~a~~e----e~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 41 AADLLVVHRDFQAALETCERGLQSLASDADAE----EPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccc----ccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 34455678999999999999999542211110 00111112222222222357778999999998877666543322
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054 298 -VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (347)
Q Consensus 298 -~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 336 (347)
+|.+-..-..|.+.+++...++.- .+.-.+|+|...-.
T Consensus 117 PpkIleLCILLysKv~Ep~amlev~-~~WL~~p~Nq~lp~ 155 (309)
T PF07163_consen 117 PPKILELCILLYSKVQEPAAMLEVA-SAWLQDPSNQSLPE 155 (309)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhCcccCCchh
Confidence 566666667778888887666544 44445787765443
No 480
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.11 E-value=2.1e+02 Score=26.45 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=58.3
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHH------------
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG------------ 282 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~------------ 282 (347)
-+.++....+.|+..+|++.++...+-++-+ ....+.-|+-.+++.+.-|..
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~----------------t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLL----------------TMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3567777888899999999888776622100 111223333333333332222
Q ss_pred ----HHHHHHHHhhc-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 283 ----ALLDTEFAMRD-----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 283 ----A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
|.-.|..||-. +.-.+.+-.++|..-.. ..|++.+.+|.+.+|.-+....++..+
T Consensus 342 lPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE----~~AvEAihRAvEFNPHVPkYLLE~ksl 405 (556)
T KOG3807|consen 342 LPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAE----INAVEAIHRAVEFNPHVPKYLLEMKSL 405 (556)
T ss_pred CcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHH----HHHHHHHHHHhhcCCCCcHHHHHHHhc
Confidence 22333333210 11123344444433222 348899999999999988877776543
No 481
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=49.46 E-value=39 Score=18.38 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
|+.+-.+|.+.|++++|+..+.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344455556666666666665544
No 482
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=49.46 E-value=47 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.019 Sum_probs=13.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 269 NSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 269 nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
.+|..++..|++++|+.++-.||...|
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~ 94 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCP 94 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 344445555555555555555555544
No 483
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=49.11 E-value=2.3e+02 Score=27.08 Aligned_cols=30 Identities=20% Similarity=-0.053 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+.++|+.|......+++-+|+..++.|...
T Consensus 296 A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~ 325 (413)
T cd09245 296 ALACKFLGIDAGENGKVGEAIGWLRAAKKE 325 (413)
T ss_pred HHHHHHHHHhhHhcCCHHHHHHHHHHHHHH
Confidence 457888888888899999999999999884
No 484
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.92 E-value=1.2e+02 Score=27.47 Aligned_cols=104 Identities=12% Similarity=-0.006 Sum_probs=65.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+++.+++|.-|.+.++-+.+.+...+.++..... .+.-+-.-+-..+|..|..+.-..+.++..+-.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st------------g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~ 181 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST------------GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDI 181 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc------------ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 56778888888888888888888888777632111 111122223345666776666667777777777
Q ss_pred hhcCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 291 MRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 291 l~~~p~~-----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
++..-+. .|+| .|.-.+...+|.+|...+..++.-.
T Consensus 182 iEkGgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 182 IEKGGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHhCCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhccc
Confidence 7665432 2333 3555566778888888877766443
No 485
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=48.01 E-value=1.2e+02 Score=33.32 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=30.6
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhh
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~ 243 (347)
...+..+.+|+.+...|+|.+|+..|..|+..++
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k 273 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILK 273 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3567789999999999999999999999999886
No 486
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.70 E-value=43 Score=23.24 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=7.0
Q ss_pred hcCCHHHHHHHHHHHH
Q 019054 310 ALNDVDAAVESFEKAL 325 (347)
Q Consensus 310 ~~~~~~~A~~~~~~al 325 (347)
..|+|++|+..|..++
T Consensus 18 ~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 18 NAGNYEEALRLYQHAL 33 (75)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444433
No 487
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=47.35 E-value=27 Score=32.79 Aligned_cols=14 Identities=29% Similarity=0.171 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhh
Q 019054 314 VDAAVESFEKALKL 327 (347)
Q Consensus 314 ~~~A~~~~~~al~l 327 (347)
|.+|...+.+|-..
T Consensus 378 Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 378 YKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 55566666666544
No 488
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=47.22 E-value=1.4e+02 Score=25.21 Aligned_cols=52 Identities=19% Similarity=0.028 Sum_probs=35.2
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q 019054 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKL 327 (347)
Q Consensus 274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l 327 (347)
+.-+++.++|.++.-+|.+++ ++.+--+..+.|.. -++-++|..+-.+|.++
T Consensus 178 ~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 334467889999999999886 45555555555432 24677788877777765
No 489
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=47.04 E-value=69 Score=33.03 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 301 LFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
+.-.+.+|...|++.+|+..|+.|+...
T Consensus 938 ~~~aa~aye~~gK~~Ea~gay~sA~mwr 965 (1243)
T COG5290 938 HISAAKAYEVEGKYIEAHGAYDSALMWR 965 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4447888999999999999888877553
No 490
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.98 E-value=93 Score=28.16 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
....++.|+|..|.+.++-+.+.+.+.+.++-.-.. --+..++|..|-.+.-.++.++.....++.-
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 456789999999999999999999999887544322 3456778888877777777766666666543
No 491
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=46.49 E-value=1.4e+02 Score=24.18 Aligned_cols=110 Identities=17% Similarity=0.071 Sum_probs=69.5
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhcccc----C--------------CCChhhh---hhHHhhHHHHHHHHHHHHH
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEK----E--------------GIDEGKS---SSLRKTKSQIFTNSSACKL 275 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~----~--------------~~~~~~~---~~~~~~~~~~~~nla~~~~ 275 (347)
..+......|+.++|+....+|...+...... . +.+.+.. .-............+.-.+
T Consensus 7 ~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l 86 (155)
T PF10938_consen 7 QKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELL 86 (155)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHH
Confidence 34555567799999999999998877632110 0 1111100 0123344456778889999
Q ss_pred HcCChHHHHHHHHHHh-hcC------C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 276 KLGDLKGALLDTEFAM-RDG------D-DNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 276 ~l~~~~~A~~~~~~al-~~~------p-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
+.|+.+.|++.++.+- +++ | ........++..+...|++.+|...+..++.
T Consensus 87 ~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 87 KKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999877652 111 1 1245667789999999999999999988874
No 492
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.45 E-value=1.4e+02 Score=23.17 Aligned_cols=61 Identities=8% Similarity=-0.032 Sum_probs=44.1
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--DGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 325 (347)
.++....+|...|... ..+...|..... +.-..+..|...|..+...|++++|.+.|++++
T Consensus 64 nD~RylkiWi~ya~~~------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 64 NDERYLKIWIKYADLS------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp T-HHHHHHHHHHHTTB------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4555666665555432 277777777664 556678889999999999999999999998875
No 493
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.40 E-value=91 Score=25.97 Aligned_cols=33 Identities=18% Similarity=0.025 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
.+..+.+++.++..+|+.++|.....++..+.|
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 567889999999999999999999999999999
No 494
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=46.02 E-value=63 Score=32.83 Aligned_cols=71 Identities=13% Similarity=0.020 Sum_probs=47.6
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
.+.....++.++|..+..+..|++|.++|.+.-.. -+...+|+++..|++-.. +..--|.+.+..-.+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~ 858 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEV----LARTLPEDSELLPVM 858 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHH
Confidence 34556788999999999999999999998765432 345667777777765433 333345655555555
Q ss_pred HHH
Q 019054 339 AVA 341 (347)
Q Consensus 339 ~~~ 341 (347)
+.+
T Consensus 859 a~m 861 (1189)
T KOG2041|consen 859 ADM 861 (1189)
T ss_pred HHH
Confidence 443
No 495
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=45.58 E-value=49 Score=18.98 Aligned_cols=23 Identities=17% Similarity=-0.047 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHH
Q 019054 280 LKGALLDTEFAMRDGDDNVKALFR 303 (347)
Q Consensus 280 ~~~A~~~~~~al~~~p~~~~a~~~ 303 (347)
++.|...|++.+...| +++.|.+
T Consensus 3 ~dRAR~IyeR~v~~hp-~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP-EVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHHhCC-CchHHHH
Confidence 3444445555444443 2444433
No 496
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=45.53 E-value=71 Score=25.37 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=27.3
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
....+..+..+|.+|.++|+-.+|-+...+|.+.
T Consensus 116 ~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4567788999999999999999999999998864
No 497
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.02 E-value=47 Score=18.20 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
.|..+-.++.+.|+++.|...++.-.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555566666666666666665543
No 498
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=44.97 E-value=1.3e+02 Score=22.97 Aligned_cols=68 Identities=9% Similarity=0.018 Sum_probs=46.3
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCC--hhhhhhHHhhHHHHHHHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID--EGKSSSLRKTKSQIFTNSSACKL 275 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~nla~~~~ 275 (347)
..+.+......+..+...|+++.+.....+|..++.++...-+.+ .+-..++.....-++..+..+..
T Consensus 25 Lyd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~~L~~A~~ 94 (122)
T PF02561_consen 25 LYDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIRQLVQANL 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888999999999999999999988765543333 34444455444444444444443
No 499
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=44.43 E-value=1.5e+02 Score=29.29 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=26.3
Q ss_pred HHHHHcCChHHHHHHHHHHhhc--CCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCC
Q 019054 272 ACKLKLGDLKGALLDTEFAMRD--GDDNVKALFRQGQAYMA-LNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 272 ~~~~~l~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~-~~~~~~A~~~~~~al~l~P 329 (347)
..+..+++-..|...|++++.. .|+..+-.+.+-..|.. -|+...+++.-++-...-|
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 4444555555555555555544 44433333333333332 3555554444444333333
No 500
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.20 E-value=64 Score=33.36 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=28.2
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~ 243 (347)
+..++..|+-+|.+|+|++|..+|-++|.+++
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 45578899999999999999999999998765
Done!