Query 019054
Match_columns 347
No_of_seqs 346 out of 3250
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 10:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ihg_A Cyclophilin 40; ppiase 100.0 4.4E-73 1.5E-77 530.0 37.5 341 3-346 15-355 (370)
2 1a58_A Cyclophilin; isomerase, 100.0 2.1E-55 7.2E-60 363.4 20.7 171 3-173 6-176 (177)
3 2igv_A Peptidyl-prolyl CIS-tra 100.0 2.3E-55 7.7E-60 361.9 20.1 172 1-174 1-172 (173)
4 2wfi_A Peptidyl-prolyl CIS-tra 100.0 3.4E-55 1.1E-59 362.5 20.9 172 2-173 8-179 (179)
5 2he9_A NK-tumor recognition pr 100.0 6.8E-55 2.3E-59 363.4 20.9 174 1-174 17-190 (192)
6 2poy_A Peptidyl-prolyl CIS-tra 100.0 7.1E-54 2.4E-58 355.5 19.4 169 2-172 18-186 (186)
7 1qng_A Peptidyl-prolyl CIS-tra 100.0 8E-54 2.7E-58 351.7 18.3 169 2-173 2-170 (170)
8 2z6w_A Peptidyl-prolyl CIS-tra 100.0 1.9E-53 6.6E-58 347.7 19.5 163 1-173 1-164 (165)
9 1mzw_A Cyclophilin H, U-snRNP- 100.0 3E-53 1E-57 350.2 18.1 169 2-173 9-177 (177)
10 2cmt_A Peptidyl-prolyl CIS-tra 100.0 6.3E-53 2.1E-57 346.3 19.5 163 1-173 8-171 (172)
11 2r99_A Peptidyl-prolyl CIS-tra 100.0 1.2E-52 4E-57 345.3 20.0 164 1-173 9-172 (173)
12 2haq_A Cyclophilin; rotamase, 100.0 5.8E-53 2E-57 345.6 17.9 163 1-173 9-172 (172)
13 3pmp_A Cyclophilin A; peptidyl 100.0 1.6E-52 5.6E-57 342.5 19.3 162 2-173 1-163 (164)
14 1z81_A Cyclophilin; structural 100.0 1.4E-52 4.6E-57 356.8 18.0 169 2-173 58-229 (229)
15 3ich_A Peptidyl-prolyl CIS-tra 100.0 3.7E-52 1.3E-56 346.2 16.7 163 3-174 15-178 (188)
16 3rdd_A Peptidyl-prolyl CIS-tra 100.0 8.8E-52 3E-56 343.1 18.8 164 1-173 20-183 (184)
17 4fru_A Cyclophilin B, peptidyl 100.0 9.6E-52 3.3E-56 344.3 18.0 164 3-174 12-175 (185)
18 3k2c_A Peptidyl-prolyl CIS-tra 100.0 2.3E-51 7.7E-56 342.9 19.8 165 1-174 25-191 (193)
19 2c3b_A Ppiase, cyclophilin; is 100.0 1.1E-50 3.8E-55 333.3 11.9 160 5-173 4-172 (172)
20 2ose_A Probable peptidyl-proly 100.0 5.3E-50 1.8E-54 343.7 14.6 176 2-179 13-212 (234)
21 2x7k_A Peptidyl-prolyl CIS-tra 100.0 2.1E-48 7E-53 317.9 16.5 155 2-173 10-165 (166)
22 2ok3_A Peptidyl-prolyl CIS-tra 100.0 2.8E-48 9.7E-53 316.2 16.2 156 6-178 3-160 (161)
23 2poe_A Cyclophilin-like protei 100.0 3.6E-48 1.2E-52 321.4 16.7 159 8-179 17-180 (185)
24 2b71_A Cyclophilin-like protei 100.0 4.2E-48 1.4E-52 322.7 16.4 156 3-175 38-194 (196)
25 2fu0_A Cyclophilin, putative; 100.0 5.1E-48 1.7E-52 313.7 16.3 154 3-173 5-159 (160)
26 1zkc_A Peptidyl-prolyl CIS-tra 100.0 7.4E-48 2.5E-52 321.1 15.6 158 4-178 20-179 (197)
27 2k7n_A Peptidyl-prolyl CIS-tra 100.0 2.1E-47 7.1E-52 319.4 16.9 161 2-179 10-171 (203)
28 2a2n_A Peptidylprolyl isomeras 100.0 1.8E-47 6.1E-52 314.7 14.1 147 14-172 27-175 (176)
29 3bo7_A Peptidyl-prolyl CIS-tra 100.0 3.6E-47 1.2E-51 320.2 16.1 161 3-180 6-179 (201)
30 1w74_A Peptidyl-prolyl CIS-tra 100.0 7.8E-47 2.7E-51 314.2 17.0 164 1-173 21-191 (191)
31 2hq6_A Serologically defined c 100.0 1E-46 3.5E-51 312.3 15.5 158 3-178 24-184 (185)
32 1v9t_A Cyclophilin B; beta bar 100.0 2.6E-45 8.9E-50 300.5 14.3 153 2-173 3-165 (166)
33 3bkp_A Cyclophilin; malaria, i 100.0 3.9E-45 1.3E-49 312.8 15.3 160 3-180 21-199 (232)
34 3s6m_A Peptidyl-prolyl CIS-tra 100.0 3.1E-44 1.1E-48 295.0 14.2 153 2-173 2-167 (167)
35 1lop_A Cyclophilin A; rotamase 100.0 2.4E-44 8.3E-49 294.2 11.9 149 6-173 2-163 (164)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 3E-39 1E-43 291.6 7.5 137 3-152 170-344 (369)
37 4gco_A Protein STI-1; structur 99.9 1.1E-21 3.7E-26 154.2 12.4 116 209-342 10-125 (126)
38 3rkv_A Putative peptidylprolyl 99.9 7.4E-21 2.5E-25 155.6 13.6 140 207-346 6-146 (162)
39 2hr2_A Hypothetical protein; a 99.8 9.5E-21 3.3E-25 152.9 8.7 132 209-346 8-150 (159)
40 4gcn_A Protein STI-1; structur 99.8 3.9E-19 1.3E-23 139.7 11.1 116 208-342 4-126 (127)
41 3upv_A Heat shock protein STI1 99.8 1.7E-18 5.7E-23 135.1 11.7 117 211-345 3-125 (126)
42 3gyz_A Chaperone protein IPGC; 99.8 8.1E-18 2.8E-22 136.3 12.2 115 208-341 32-146 (151)
43 3sz7_A HSC70 cochaperone (SGT) 99.7 2.3E-17 7.8E-22 134.9 11.3 117 211-345 10-128 (164)
44 4ga2_A E3 SUMO-protein ligase 99.7 1.3E-17 4.5E-22 134.8 9.4 120 209-346 28-148 (150)
45 2fbn_A 70 kDa peptidylprolyl i 99.7 5.9E-17 2E-21 136.7 13.2 151 194-346 20-170 (198)
46 2vgx_A Chaperone SYCD; alterna 99.7 6.9E-17 2.3E-21 130.3 12.2 119 208-344 17-135 (148)
47 4ga2_A E3 SUMO-protein ligase 99.7 1.3E-16 4.4E-21 128.9 13.4 112 217-346 2-113 (150)
48 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 4.6E-17 1.6E-21 155.6 12.4 143 201-346 257-399 (457)
49 1p5q_A FKBP52, FK506-binding p 99.7 9E-17 3.1E-21 147.4 13.4 143 201-346 136-278 (336)
50 2xcb_A PCRH, regulatory protei 99.7 9.9E-17 3.4E-21 128.1 11.6 119 209-345 15-133 (142)
51 2if4_A ATFKBP42; FKBP-like, al 99.7 1.2E-16 4E-21 146.8 10.8 146 198-344 165-310 (338)
52 3q49_B STIP1 homology and U bo 99.7 6E-16 2E-20 121.8 11.0 117 211-345 8-129 (137)
53 1elw_A TPR1-domain of HOP; HOP 99.7 1.3E-15 4.3E-20 115.8 12.5 116 210-343 2-117 (118)
54 4gyw_A UDP-N-acetylglucosamine 99.6 6.6E-16 2.3E-20 154.9 13.2 87 259-345 72-158 (723)
55 3urz_A Uncharacterized protein 99.6 2.2E-15 7.4E-20 128.4 13.8 114 211-342 3-132 (208)
56 2vyi_A SGTA protein; chaperone 99.6 5.1E-15 1.8E-19 114.4 14.0 122 208-347 8-129 (131)
57 2lni_A Stress-induced-phosphop 99.6 2E-15 7E-20 117.5 10.7 118 211-346 15-132 (133)
58 4gyw_A UDP-N-acetylglucosamine 99.6 2E-15 7E-20 151.4 12.9 121 209-347 6-126 (723)
59 2dba_A Smooth muscle cell asso 99.6 3.7E-15 1.2E-19 118.4 11.5 116 211-344 27-145 (148)
60 1zu2_A Mitochondrial import re 99.6 2E-15 6.7E-20 121.6 9.8 105 222-344 12-137 (158)
61 1hxi_A PEX5, peroxisome target 99.6 1.2E-15 4.1E-20 118.6 8.2 101 215-333 20-120 (121)
62 2pl2_A Hypothetical conserved 99.6 2.5E-15 8.6E-20 128.8 10.5 113 213-343 6-129 (217)
63 1a17_A Serine/threonine protei 99.6 1.9E-14 6.5E-19 116.5 14.3 117 207-341 8-124 (166)
64 2xev_A YBGF; tetratricopeptide 99.6 8.6E-15 2.9E-19 113.8 11.0 113 214-344 4-122 (129)
65 1elr_A TPR2A-domain of HOP; HO 99.6 8.3E-15 2.8E-19 113.4 10.8 117 211-346 3-126 (131)
66 2h6f_A Protein farnesyltransfe 99.6 6.9E-15 2.4E-19 137.1 11.8 86 259-344 161-246 (382)
67 3k9i_A BH0479 protein; putativ 99.6 9.9E-15 3.4E-19 112.3 10.4 101 224-342 2-105 (117)
68 2pl2_A Hypothetical conserved 99.6 1.9E-14 6.4E-19 123.3 12.2 119 208-345 69-198 (217)
69 4i17_A Hypothetical protein; T 99.6 3.8E-14 1.3E-18 121.7 13.4 105 212-334 7-112 (228)
70 1na0_A Designed protein CTPR3; 99.6 7.6E-14 2.6E-18 106.8 13.6 117 211-345 8-124 (125)
71 3vtx_A MAMA; tetratricopeptide 99.6 5.1E-14 1.7E-18 116.6 13.5 136 211-346 4-155 (184)
72 2h6f_A Protein farnesyltransfe 99.6 9.3E-15 3.2E-19 136.2 9.9 124 205-346 90-214 (382)
73 1wao_1 Serine/threonine protei 99.5 2.3E-14 8E-19 137.5 11.6 115 210-342 4-118 (477)
74 2c2l_A CHIP, carboxy terminus 99.5 2.6E-14 8.8E-19 127.6 10.6 103 211-331 3-105 (281)
75 3gyz_A Chaperone protein IPGC; 99.5 2.5E-14 8.6E-19 115.6 7.8 89 259-347 31-119 (151)
76 3vtx_A MAMA; tetratricopeptide 99.5 1.8E-13 6.3E-18 113.2 12.9 125 209-333 36-176 (184)
77 3urz_A Uncharacterized protein 99.5 9.4E-14 3.2E-18 118.1 11.3 106 218-342 60-200 (208)
78 2e2e_A Formate-dependent nitri 99.5 7.9E-14 2.7E-18 114.9 10.2 117 209-343 41-160 (177)
79 4i17_A Hypothetical protein; T 99.5 5.8E-14 2E-18 120.5 9.6 126 209-345 73-227 (228)
80 4gco_A Protein STI-1; structur 99.5 2.8E-13 9.6E-18 105.8 11.8 88 259-346 8-95 (126)
81 2kck_A TPR repeat; tetratricop 99.5 5.7E-14 2E-18 105.6 6.2 102 213-332 7-111 (112)
82 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.1E-13 1.4E-17 113.6 11.4 116 210-346 4-135 (213)
83 2vsy_A XCC0866; transferase, g 99.4 4.6E-13 1.6E-17 131.1 12.7 120 208-345 19-138 (568)
84 3uq3_A Heat shock protein STI1 99.4 6.8E-13 2.3E-17 114.9 11.4 114 210-341 137-256 (258)
85 2fo7_A Synthetic consensus TPR 99.4 2E-12 7E-17 99.8 12.8 115 213-345 2-116 (136)
86 2vgx_A Chaperone SYCD; alterna 99.4 6.4E-13 2.2E-17 106.8 9.7 88 259-346 16-103 (148)
87 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.5E-12 5.3E-17 110.0 12.0 103 212-332 37-155 (213)
88 4abn_A Tetratricopeptide repea 99.4 8E-13 2.7E-17 126.7 11.3 117 212-346 170-306 (474)
89 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.9E-12 9.9E-17 112.2 13.4 111 210-338 41-151 (275)
90 3as5_A MAMA; tetratricopeptide 99.4 4.5E-12 1.6E-16 103.7 13.5 117 212-346 42-158 (186)
91 2q7f_A YRRB protein; TPR, prot 99.4 3.3E-12 1.1E-16 109.7 12.6 116 211-344 56-171 (243)
92 2pzi_A Probable serine/threoni 99.4 5.7E-13 1.9E-17 133.4 8.8 117 211-346 432-548 (681)
93 2l6j_A TPR repeat-containing p 99.4 5.8E-14 2E-18 105.9 1.1 95 211-323 3-103 (111)
94 3qky_A Outer membrane assembly 99.4 1.6E-12 5.6E-17 113.9 10.5 109 211-337 14-136 (261)
95 4eqf_A PEX5-related protein; a 99.4 4.6E-12 1.6E-16 116.2 13.6 113 216-346 181-295 (365)
96 2kat_A Uncharacterized protein 99.4 3.1E-12 1E-16 97.6 10.1 98 230-345 3-102 (115)
97 1fch_A Peroxisomal targeting s 99.4 3.3E-12 1.1E-16 116.9 12.0 118 211-346 216-344 (368)
98 2pzi_A Probable serine/threoni 99.4 4.1E-13 1.4E-17 134.4 6.3 113 211-342 466-578 (681)
99 3ieg_A DNAJ homolog subfamily 99.4 4.9E-12 1.7E-16 114.7 12.8 119 214-346 236-354 (359)
100 2e2e_A Formate-dependent nitri 99.4 1.7E-12 5.9E-17 106.8 8.9 113 216-346 14-129 (177)
101 4eqf_A PEX5-related protein; a 99.4 2.3E-12 7.7E-17 118.3 10.6 118 211-346 212-341 (365)
102 1w3b_A UDP-N-acetylglucosamine 99.4 3.1E-12 1.1E-16 118.4 11.6 116 213-346 272-387 (388)
103 4abn_A Tetratricopeptide repea 99.4 1.2E-12 4E-17 125.6 8.5 123 205-346 130-272 (474)
104 3as5_A MAMA; tetratricopeptide 99.3 4.3E-12 1.5E-16 103.8 10.7 118 211-346 7-124 (186)
105 3qou_A Protein YBBN; thioredox 99.3 4.5E-12 1.6E-16 113.3 11.6 118 211-346 116-269 (287)
106 2q7f_A YRRB protein; TPR, prot 99.3 7E-12 2.4E-16 107.6 12.1 113 212-342 91-203 (243)
107 2xcb_A PCRH, regulatory protei 99.3 5E-12 1.7E-16 100.5 10.2 88 259-346 13-100 (142)
108 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.8E-11 6.2E-16 107.1 14.6 117 216-346 9-125 (275)
109 3u4t_A TPR repeat-containing p 99.3 8.4E-12 2.9E-16 109.3 12.1 116 212-345 74-189 (272)
110 3uq3_A Heat shock protein STI1 99.3 1.9E-11 6.5E-16 105.6 14.1 135 212-346 79-221 (258)
111 1w3b_A UDP-N-acetylglucosamine 99.3 9.3E-12 3.2E-16 115.2 12.6 135 211-345 168-318 (388)
112 2ho1_A Type 4 fimbrial biogene 99.3 1.4E-11 4.8E-16 106.7 12.9 131 212-342 71-219 (252)
113 2yhc_A BAMD, UPF0169 lipoprote 99.3 6.9E-12 2.4E-16 107.7 10.7 110 212-336 4-134 (225)
114 2r5s_A Uncharacterized protein 99.3 7.9E-12 2.7E-16 103.0 10.6 114 215-346 9-158 (176)
115 4gcn_A Protein STI-1; structur 99.3 4.9E-12 1.7E-16 98.8 8.8 75 259-333 3-77 (127)
116 3u4t_A TPR repeat-containing p 99.3 4.6E-12 1.6E-16 110.9 9.6 76 264-339 74-149 (272)
117 2vq2_A PILW, putative fimbrial 99.3 1.5E-11 5E-16 104.1 12.4 116 212-345 42-160 (225)
118 2vq2_A PILW, putative fimbrial 99.3 1.9E-11 6.7E-16 103.3 12.8 118 211-344 75-194 (225)
119 3ieg_A DNAJ homolog subfamily 99.3 9.7E-12 3.3E-16 112.7 11.7 111 211-339 2-115 (359)
120 3hym_B Cell division cycle pro 99.3 5.6E-12 1.9E-16 113.1 9.9 123 211-342 192-314 (330)
121 3qky_A Outer membrane assembly 99.3 1.2E-11 4.2E-16 108.3 11.6 117 212-343 52-196 (261)
122 3upv_A Heat shock protein STI1 99.3 2.8E-11 9.5E-16 93.7 12.3 85 262-346 2-86 (126)
123 3cv0_A Peroxisome targeting si 99.3 1.3E-11 4.5E-16 110.6 11.8 118 211-346 171-300 (327)
124 1na3_A Designed protein CTPR2; 99.3 3.9E-11 1.3E-15 86.8 12.2 85 261-345 6-90 (91)
125 1qqe_A Vesicular transport pro 99.3 2E-11 6.8E-16 109.2 12.3 122 211-344 76-211 (292)
126 2y4t_A DNAJ homolog subfamily 99.3 2E-11 6.8E-16 114.9 12.7 116 216-345 261-376 (450)
127 2fo7_A Synthetic consensus TPR 99.3 2.2E-11 7.7E-16 93.8 10.7 102 212-331 35-136 (136)
128 2y4t_A DNAJ homolog subfamily 99.3 1.9E-11 6.6E-16 115.0 12.4 114 209-340 23-139 (450)
129 2ho1_A Type 4 fimbrial biogene 99.3 1.4E-11 4.8E-16 106.7 10.6 112 211-340 36-149 (252)
130 2l6j_A TPR repeat-containing p 99.3 5.3E-11 1.8E-15 89.4 11.8 84 263-346 3-92 (111)
131 3hym_B Cell division cycle pro 99.3 2.3E-11 7.7E-16 109.2 11.5 118 211-346 89-207 (330)
132 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.8E-11 9.5E-16 103.9 11.1 117 212-346 41-198 (225)
133 2gw1_A Mitochondrial precursor 99.3 2.4E-11 8.3E-16 116.0 11.9 106 209-333 3-108 (514)
134 3ma5_A Tetratricopeptide repea 99.3 2.3E-11 7.7E-16 90.7 9.2 86 259-344 2-89 (100)
135 3edt_B KLC 2, kinesin light ch 99.2 3.5E-11 1.2E-15 105.2 11.3 128 209-346 40-183 (283)
136 3mkr_A Coatomer subunit epsilo 99.2 5.4E-11 1.9E-15 106.5 12.5 128 212-339 130-276 (291)
137 1fch_A Peroxisomal targeting s 99.2 7.9E-11 2.7E-15 107.6 13.5 111 217-346 187-299 (368)
138 3mkr_A Coatomer subunit epsilo 99.2 8.5E-11 2.9E-15 105.2 12.7 65 278-342 180-244 (291)
139 4g1t_A Interferon-induced prot 99.2 6.5E-11 2.2E-15 112.3 12.3 123 211-342 50-182 (472)
140 1hxi_A PEX5, peroxisome target 99.2 9.2E-11 3.2E-15 90.6 11.0 82 265-346 18-99 (121)
141 3sz7_A HSC70 cochaperone (SGT) 99.2 1.1E-10 3.9E-15 94.7 11.9 87 260-346 7-93 (164)
142 1qqe_A Vesicular transport pro 99.2 6.2E-11 2.1E-15 106.0 11.3 111 211-333 116-234 (292)
143 2hr2_A Hypothetical protein; a 99.2 9.6E-11 3.3E-15 94.3 10.8 86 262-347 9-117 (159)
144 2vsy_A XCC0866; transferase, g 99.2 6.4E-11 2.2E-15 115.8 11.7 104 225-346 2-105 (568)
145 3cv0_A Peroxisome targeting si 99.2 2.2E-10 7.4E-15 102.5 14.2 110 219-346 144-254 (327)
146 3fp2_A TPR repeat-containing p 99.2 1.1E-10 3.8E-15 112.2 12.4 88 259-346 305-392 (537)
147 2kc7_A BFR218_protein; tetratr 99.2 1.1E-11 3.6E-16 91.7 3.4 89 217-331 5-94 (99)
148 1p5q_A FKBP52, FK506-binding p 99.2 2.9E-11 1E-15 110.5 7.0 105 224-346 125-244 (336)
149 1na3_A Designed protein CTPR2; 99.2 1E-10 3.5E-15 84.5 8.3 84 211-312 8-91 (91)
150 3edt_B KLC 2, kinesin light ch 99.2 1.4E-10 4.9E-15 101.2 10.6 109 209-327 82-198 (283)
151 3q49_B STIP1 homology and U bo 99.2 3.3E-10 1.1E-14 88.5 11.5 88 259-346 4-91 (137)
152 2xpi_A Anaphase-promoting comp 99.1 2.2E-10 7.6E-15 111.8 12.7 119 212-342 475-594 (597)
153 2kc7_A BFR218_protein; tetratr 99.1 4.1E-10 1.4E-14 83.0 10.8 78 267-344 3-83 (99)
154 3fp2_A TPR repeat-containing p 99.1 2.6E-10 8.9E-15 109.6 12.4 118 210-346 241-358 (537)
155 2kck_A TPR repeat; tetratricop 99.1 1.3E-10 4.4E-15 86.9 8.0 85 261-345 3-89 (112)
156 3ulq_A Response regulator aspa 99.1 2.9E-10 9.9E-15 105.2 11.9 125 210-345 141-277 (383)
157 3u3w_A Transcriptional activat 99.1 1.5E-10 5E-15 103.4 9.2 107 211-328 154-267 (293)
158 1pc2_A Mitochondria fission pr 99.1 3.7E-10 1.3E-14 89.8 10.2 106 223-346 9-119 (152)
159 3ro3_A PINS homolog, G-protein 99.1 4.5E-10 1.6E-14 89.3 11.0 108 210-329 7-120 (164)
160 2gw1_A Mitochondrial precursor 99.1 2.8E-10 9.6E-15 108.5 10.9 114 212-343 372-494 (514)
161 2xpi_A Anaphase-promoting comp 99.1 5.4E-10 1.8E-14 109.0 12.9 118 211-346 372-489 (597)
162 1a17_A Serine/threonine protei 99.1 2.7E-10 9.2E-15 91.7 8.6 100 211-328 46-147 (166)
163 3ulq_A Response regulator aspa 99.1 5.2E-10 1.8E-14 103.5 11.6 108 210-329 182-295 (383)
164 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 8.5E-11 2.9E-15 112.1 6.1 105 224-346 246-365 (457)
165 2fbn_A 70 kDa peptidylprolyl i 99.1 3.4E-10 1.2E-14 94.8 9.2 108 221-346 13-136 (198)
166 3q15_A PSP28, response regulat 99.1 7.8E-10 2.7E-14 102.3 12.3 109 210-330 180-293 (378)
167 2ifu_A Gamma-SNAP; membrane fu 99.1 2E-10 6.8E-15 103.4 7.8 105 212-329 76-186 (307)
168 3nf1_A KLC 1, kinesin light ch 99.1 4.6E-10 1.6E-14 99.6 10.1 127 210-346 67-209 (311)
169 3nf1_A KLC 1, kinesin light ch 99.1 7.3E-10 2.5E-14 98.3 11.1 109 209-327 108-224 (311)
170 2lni_A Stress-induced-phosphop 99.1 1.5E-09 5.2E-14 83.7 11.4 88 259-346 11-98 (133)
171 2ond_A Cleavage stimulation fa 99.1 5.6E-10 1.9E-14 100.4 10.2 116 211-344 98-215 (308)
172 2ifu_A Gamma-SNAP; membrane fu 99.0 6.2E-10 2.1E-14 100.2 10.0 108 211-332 115-228 (307)
173 3q15_A PSP28, response regulat 99.0 9.7E-10 3.3E-14 101.6 11.3 126 210-346 139-275 (378)
174 3rkv_A Putative peptidylprolyl 99.0 1.2E-09 3.9E-14 88.5 10.3 85 262-346 9-111 (162)
175 3gw4_A Uncharacterized protein 99.0 8.8E-10 3E-14 91.8 9.7 107 211-329 25-138 (203)
176 1elw_A TPR1-domain of HOP; HOP 99.0 3.8E-09 1.3E-13 79.3 12.1 84 263-346 3-86 (118)
177 3n71_A Histone lysine methyltr 99.0 1.1E-09 3.7E-14 104.9 11.1 124 204-337 301-437 (490)
178 2if4_A ATFKBP42; FKBP-like, al 99.0 1.3E-10 4.5E-15 106.3 4.2 103 214-334 232-335 (338)
179 2vyi_A SGTA protein; chaperone 99.0 5.7E-09 2E-13 79.8 12.8 88 259-346 7-94 (131)
180 1wao_1 Serine/threonine protei 99.0 8.3E-11 2.8E-15 112.8 2.4 106 208-331 36-154 (477)
181 2qfc_A PLCR protein; TPR, HTH, 99.0 9.4E-10 3.2E-14 98.1 9.0 120 211-341 154-282 (293)
182 1ouv_A Conserved hypothetical 99.0 4.6E-09 1.6E-13 92.2 13.2 76 263-342 73-156 (273)
183 2xev_A YBGF; tetratricopeptide 99.0 3E-09 1E-13 81.9 10.7 82 265-346 3-90 (129)
184 4g1t_A Interferon-induced prot 99.0 8.4E-10 2.9E-14 104.5 9.0 122 211-342 93-219 (472)
185 3ro3_A PINS homolog, G-protein 99.0 1.9E-09 6.6E-14 85.6 9.8 107 212-330 49-161 (164)
186 3qww_A SET and MYND domain-con 99.0 4.4E-09 1.5E-13 99.1 13.5 124 208-341 294-430 (433)
187 3u3w_A Transcriptional activat 99.0 6.4E-10 2.2E-14 99.2 7.5 122 213-346 116-250 (293)
188 4a1s_A PINS, partner of inscut 99.0 6.7E-10 2.3E-14 103.2 7.4 121 210-344 46-178 (411)
189 2qfc_A PLCR protein; TPR, HTH, 99.0 2.9E-09 9.9E-14 94.9 11.3 121 213-345 116-249 (293)
190 3rjv_A Putative SEL1 repeat pr 99.0 4.6E-09 1.6E-13 89.2 11.6 132 211-343 17-173 (212)
191 4f3v_A ESX-1 secretion system 99.0 2.8E-09 9.7E-14 94.1 10.4 108 214-339 137-248 (282)
192 1zu2_A Mitochondrial import re 99.0 5.4E-10 1.8E-14 89.8 5.1 76 205-298 29-125 (158)
193 1dce_A Protein (RAB geranylger 99.0 3.2E-09 1.1E-13 103.8 11.5 119 209-345 60-191 (567)
194 3sf4_A G-protein-signaling mod 98.9 2.5E-09 8.6E-14 98.5 10.2 123 211-345 186-320 (406)
195 2dba_A Smooth muscle cell asso 98.9 6E-09 2.1E-13 81.9 10.9 88 259-346 23-113 (148)
196 1na0_A Designed protein CTPR3; 98.9 1.2E-08 4.1E-13 77.3 11.9 84 263-346 8-91 (125)
197 2ond_A Cleavage stimulation fa 98.9 1.2E-08 4.1E-13 91.6 13.5 99 229-345 33-147 (308)
198 2c2l_A CHIP, carboxy terminus 98.9 5E-09 1.7E-13 93.1 10.7 84 263-346 3-86 (281)
199 1dce_A Protein (RAB geranylger 98.9 2.3E-09 8E-14 104.7 9.0 120 207-344 102-238 (567)
200 3sf4_A G-protein-signaling mod 98.9 5E-09 1.7E-13 96.5 10.8 122 211-344 126-279 (406)
201 4a1s_A PINS, partner of inscut 98.9 4.4E-09 1.5E-13 97.6 10.5 123 210-344 164-315 (411)
202 3dra_A Protein farnesyltransfe 98.9 6.2E-09 2.1E-13 93.6 11.0 119 210-346 101-234 (306)
203 1ouv_A Conserved hypothetical 98.9 1.1E-08 3.9E-13 89.7 12.5 78 263-344 109-194 (273)
204 3ro2_A PINS homolog, G-protein 98.9 1.7E-09 5.8E-14 96.5 7.2 107 211-331 4-116 (338)
205 1elr_A TPR2A-domain of HOP; HO 98.9 7.5E-09 2.5E-13 79.2 9.9 84 263-346 3-93 (131)
206 3ro2_A PINS homolog, G-protein 98.9 3.7E-09 1.3E-13 94.2 8.6 122 212-345 183-316 (338)
207 3bee_A Putative YFRE protein; 98.9 1.4E-08 4.9E-13 74.4 10.1 83 261-343 3-91 (93)
208 2v5f_A Prolyl 4-hydroxylase su 98.9 1.7E-08 5.7E-13 75.6 10.7 82 264-345 5-93 (104)
209 3qwp_A SET and MYND domain-con 98.9 5.7E-09 1.9E-13 98.4 9.9 123 213-345 288-426 (429)
210 3rjv_A Putative SEL1 repeat pr 98.9 1.7E-08 5.8E-13 85.6 11.9 111 211-342 84-210 (212)
211 3k9i_A BH0479 protein; putativ 98.9 2.8E-09 9.6E-14 81.3 6.2 76 209-302 24-99 (117)
212 2r5s_A Uncharacterized protein 98.9 8.6E-09 3E-13 84.6 9.2 121 206-326 34-172 (176)
213 1ihg_A Cyclophilin 40; ppiase 98.9 4.2E-09 1.4E-13 97.5 8.0 93 210-320 271-363 (370)
214 3dra_A Protein farnesyltransfe 98.9 1.3E-08 4.3E-13 91.5 10.8 118 209-344 64-192 (306)
215 3gw4_A Uncharacterized protein 98.8 1.2E-08 4E-13 84.9 9.8 109 210-329 64-178 (203)
216 3ma5_A Tetratricopeptide repea 98.8 4.9E-09 1.7E-13 77.8 5.0 81 211-309 6-88 (100)
217 3dss_A Geranylgeranyl transfer 98.8 7E-08 2.4E-12 87.4 13.2 116 212-345 64-192 (331)
218 2v5f_A Prolyl 4-hydroxylase su 98.8 2.5E-08 8.6E-13 74.7 8.4 83 212-305 5-87 (104)
219 3dss_A Geranylgeranyl transfer 98.7 4.5E-08 1.5E-12 88.6 10.6 115 209-341 105-236 (331)
220 1klx_A Cysteine rich protein B 98.7 8.8E-08 3E-12 75.5 10.8 98 218-339 31-136 (138)
221 3qou_A Protein YBBN; thioredox 98.7 2E-08 6.9E-13 89.4 7.7 122 205-326 144-283 (287)
222 3q7a_A Farnesyltransferase alp 98.7 3.3E-08 1.1E-12 90.0 8.9 96 228-341 70-168 (349)
223 3q7a_A Farnesyltransferase alp 98.7 9.3E-08 3.2E-12 87.1 11.8 87 211-315 87-176 (349)
224 1nzn_A CGI-135 protein, fissio 98.7 1.3E-07 4.4E-12 72.4 10.5 103 226-346 15-122 (126)
225 4f3v_A ESX-1 secretion system 98.7 3.2E-08 1.1E-12 87.3 8.0 116 213-347 103-223 (282)
226 3n71_A Histone lysine methyltr 98.6 3.8E-08 1.3E-12 94.2 7.6 115 210-334 349-471 (490)
227 2ooe_A Cleavage stimulation fa 98.6 6.6E-08 2.3E-12 93.4 9.4 114 211-342 320-435 (530)
228 2kat_A Uncharacterized protein 98.6 2.6E-08 8.9E-13 75.4 4.7 82 211-310 18-101 (115)
229 1hz4_A MALT regulatory protein 98.6 2.4E-07 8.1E-12 84.9 11.9 108 211-330 52-167 (373)
230 1hz4_A MALT regulatory protein 98.5 5E-07 1.7E-11 82.7 11.3 108 212-329 93-205 (373)
231 2xm6_A Protein corresponding t 98.5 4E-07 1.4E-11 87.0 10.0 77 262-340 361-448 (490)
232 2ooe_A Cleavage stimulation fa 98.5 1.5E-06 5E-11 83.9 13.7 98 228-343 254-367 (530)
233 1klx_A Cysteine rich protein B 98.4 2.8E-06 9.6E-11 66.7 11.6 94 224-343 7-104 (138)
234 3e4b_A ALGK; tetratricopeptide 98.4 1.3E-06 4.3E-11 82.9 11.2 105 213-340 177-291 (452)
235 3ly7_A Transcriptional activat 98.4 1.9E-06 6.4E-11 78.5 11.6 119 214-333 198-345 (372)
236 2xm6_A Protein corresponding t 98.4 3.5E-06 1.2E-10 80.4 13.0 107 211-341 38-156 (490)
237 1pc2_A Mitochondria fission pr 98.3 1.8E-06 6E-11 68.6 8.8 79 211-307 31-114 (152)
238 3u64_A Protein TP_0956; tetrat 98.3 2.6E-06 9E-11 74.7 10.3 92 221-330 172-272 (301)
239 3e4b_A ALGK; tetratricopeptide 98.2 4.9E-06 1.7E-10 78.8 11.0 107 210-342 246-364 (452)
240 1y8m_A FIS1; mitochondria, unk 98.2 1.7E-05 5.7E-10 61.7 11.7 85 262-346 37-125 (144)
241 3o48_A Mitochondria fission 1 98.2 1.1E-05 3.7E-10 61.9 10.1 84 263-346 39-126 (134)
242 1xi4_A Clathrin heavy chain; a 98.2 5E-06 1.7E-10 87.0 10.3 105 214-344 1197-1326(1630)
243 1b89_A Protein (clathrin heavy 98.2 4.4E-06 1.5E-10 78.1 8.9 103 214-344 124-253 (449)
244 4b4t_Q 26S proteasome regulato 98.2 1.1E-05 3.9E-10 75.0 11.5 120 211-330 54-207 (434)
245 4b4t_Q 26S proteasome regulato 98.1 7.5E-06 2.6E-10 76.2 8.3 104 212-327 135-238 (434)
246 3bee_A Putative YFRE protein; 98.0 6.2E-06 2.1E-10 60.1 5.2 70 211-298 5-77 (93)
247 3mv2_B Coatomer subunit epsilo 98.0 1.7E-05 5.7E-10 70.9 9.0 99 219-340 183-295 (310)
248 3mv2_B Coatomer subunit epsilo 98.0 4.1E-05 1.4E-09 68.3 10.8 126 214-342 102-265 (310)
249 1xi4_A Clathrin heavy chain; a 98.0 5.5E-05 1.9E-09 79.3 12.8 110 216-330 1053-1166(1630)
250 3qwp_A SET and MYND domain-con 97.9 1.2E-05 4E-10 75.7 6.7 91 210-310 327-425 (429)
251 3qww_A SET and MYND domain-con 97.9 1.3E-05 4.4E-10 75.4 6.8 74 210-293 338-411 (433)
252 3u64_A Protein TP_0956; tetrat 97.9 9.3E-05 3.2E-09 64.9 10.7 114 227-340 102-247 (301)
253 3ffl_A Anaphase-promoting comp 97.8 7.6E-05 2.6E-09 59.6 8.6 118 215-342 23-165 (167)
254 1nzn_A CGI-135 protein, fissio 97.6 0.00022 7.6E-09 54.4 7.8 78 212-307 35-117 (126)
255 1b89_A Protein (clathrin heavy 97.6 6.3E-05 2.1E-09 70.3 5.6 113 212-338 61-183 (449)
256 3o48_A Mitochondria fission 1 97.4 0.00084 2.9E-08 51.5 9.1 78 212-307 40-121 (134)
257 2ff4_A Probable regulatory pro 97.4 0.0019 6.5E-08 59.7 12.5 113 215-327 118-234 (388)
258 3ffl_A Anaphase-promoting comp 97.4 0.00027 9.2E-09 56.5 5.7 97 211-308 62-165 (167)
259 1y8m_A FIS1; mitochondria, unk 97.2 0.0015 5.3E-08 50.6 8.6 78 212-307 39-120 (144)
260 4h7y_A Dual specificity protei 97.2 0.017 6E-07 45.2 14.2 111 214-336 22-132 (161)
261 4gns_B Protein CSD3, chitin bi 96.9 0.0062 2.1E-07 60.7 11.6 64 261-324 334-397 (754)
262 4e6h_A MRNA 3'-END-processing 96.7 0.0055 1.9E-07 60.8 9.8 112 215-343 437-552 (679)
263 4e6h_A MRNA 3'-END-processing 96.7 0.012 4E-07 58.5 11.8 127 217-343 383-515 (679)
264 3ly7_A Transcriptional activat 96.5 0.0042 1.4E-07 56.5 6.4 67 213-298 278-344 (372)
265 1ya0_A SMG-7 transcript varian 96.0 0.047 1.6E-06 51.9 11.1 81 264-344 152-232 (497)
266 3txn_A 26S proteasome regulato 95.8 0.036 1.2E-06 51.0 9.4 100 217-328 104-211 (394)
267 1zbp_A Hypothetical protein VP 95.0 0.13 4.5E-06 44.3 9.4 67 273-339 6-72 (273)
268 4b4t_R RPN7, 26S proteasome re 94.8 0.038 1.3E-06 51.7 5.9 101 214-329 133-239 (429)
269 2uy1_A Cleavage stimulation fa 94.7 0.2 7E-06 47.5 10.9 126 212-340 213-362 (493)
270 3kae_A CDC27, possible protein 94.4 0.3 1E-05 39.0 9.2 73 264-336 62-152 (242)
271 1zbp_A Hypothetical protein VP 94.1 0.31 1.1E-05 42.0 9.6 92 221-330 6-132 (273)
272 2uy1_A Cleavage stimulation fa 93.7 0.29 9.8E-06 46.5 9.7 106 214-342 288-394 (493)
273 4gns_B Protein CSD3, chitin bi 93.2 0.081 2.8E-06 52.8 5.1 59 214-290 339-397 (754)
274 4g26_A Pentatricopeptide repea 92.6 0.65 2.2E-05 44.1 10.3 98 213-327 106-204 (501)
275 3kop_A Uncharacterized protein 92.5 0.71 2.4E-05 36.8 8.5 116 6-151 22-166 (188)
276 1ya0_A SMG-7 transcript varian 91.8 0.32 1.1E-05 46.1 7.0 80 213-310 153-232 (497)
277 4b4t_P 26S proteasome regulato 91.7 1.4 4.8E-05 41.1 11.3 105 211-327 136-247 (445)
278 3mv2_A Coatomer subunit alpha; 90.4 4.1 0.00014 35.9 12.1 119 215-336 117-245 (325)
279 4g26_A Pentatricopeptide repea 90.4 4.7 0.00016 38.1 13.7 88 223-327 81-169 (501)
280 4b4t_S RPN3, 26S proteasome re 90.3 0.68 2.3E-05 43.8 7.5 71 262-332 229-304 (523)
281 2ff4_A Probable regulatory pro 90.2 3.8 0.00013 37.4 12.5 81 265-345 116-218 (388)
282 3mkr_B Coatomer subunit alpha; 90.1 4.2 0.00014 35.9 11.9 115 215-332 105-232 (320)
283 2w2u_A Hypothetical P60 katani 89.6 0.85 2.9E-05 31.7 5.8 41 206-246 13-53 (83)
284 2v6y_A AAA family ATPase, P60 88.8 0.7 2.4E-05 32.2 4.9 39 208-246 7-45 (83)
285 3mkq_A Coatomer beta'-subunit; 88.5 1 3.4E-05 44.9 7.8 26 265-290 682-707 (814)
286 3mkq_B Coatomer subunit alpha; 86.9 1.9 6.4E-05 34.7 7.0 29 212-240 34-62 (177)
287 3mkq_A Coatomer beta'-subunit; 86.3 0.85 2.9E-05 45.4 5.8 45 275-324 663-707 (814)
288 2cpt_A SKD1 protein, vacuolar 86.2 1.8 6.2E-05 32.2 6.2 40 208-247 14-53 (117)
289 3mkq_B Coatomer subunit alpha; 85.8 2.2 7.6E-05 34.3 6.9 49 274-327 15-63 (177)
290 1qsa_A Protein (soluble lytic 84.2 3.2 0.00011 40.4 8.6 55 272-326 293-347 (618)
291 1wfd_A Hypothetical protein 15 84.1 2.4 8.4E-05 30.1 5.8 39 208-246 11-49 (93)
292 4h7y_A Dual specificity protei 83.7 4.3 0.00015 31.7 7.3 80 259-339 8-101 (161)
293 3txn_A 26S proteasome regulato 82.2 14 0.00046 33.8 11.4 118 211-328 18-169 (394)
294 2v6x_A Vacuolar protein sortin 81.6 2.5 8.7E-05 29.3 5.0 37 209-245 10-46 (85)
295 2dl1_A Spartin; SPG20, MIT, st 81.0 3.8 0.00013 30.2 5.8 80 204-283 14-97 (116)
296 4fhn_B Nucleoporin NUP120; pro 80.9 2.1 7.3E-05 45.0 6.3 108 215-323 845-963 (1139)
297 3t5v_B Nuclear mRNA export pro 79.7 18 0.0006 33.7 11.4 105 224-331 138-254 (455)
298 4b4t_R RPN7, 26S proteasome re 79.4 3.3 0.00011 38.3 6.4 78 264-341 131-213 (429)
299 2crb_A Nuclear receptor bindin 79.2 1.3 4.4E-05 31.1 2.6 39 209-247 12-50 (97)
300 2crb_A Nuclear receptor bindin 79.1 3.2 0.00011 29.1 4.6 29 263-291 14-42 (97)
301 1wy6_A Hypothetical protein ST 79.0 15 0.00051 28.3 8.6 51 277-327 104-154 (172)
302 2w2u_A Hypothetical P60 katani 77.8 2.5 8.6E-05 29.3 3.9 23 267-289 22-44 (83)
303 2v6y_A AAA family ATPase, P60 76.9 2.8 9.4E-05 29.1 3.9 24 267-290 14-37 (83)
304 3spa_A Mtrpol, DNA-directed RN 75.8 17 0.0006 37.5 10.8 102 212-327 127-230 (1134)
305 4a5x_A MITD1, MIT domain-conta 75.6 3.8 0.00013 28.6 4.3 35 211-245 15-49 (86)
306 3lpz_A GET4 (YOR164C homolog); 75.5 35 0.0012 30.3 11.6 26 296-321 134-159 (336)
307 3r9m_A BRO1 domain-containing 75.2 17 0.00057 32.9 9.7 119 209-327 111-282 (376)
308 3ax2_A Mitochondrial import re 74.6 10 0.00035 25.5 6.0 32 304-335 23-54 (73)
309 2wb7_A PT26-6P; extra chromoso 73.7 16 0.00054 34.1 9.0 18 228-245 448-465 (526)
310 2wpv_A GET4, UPF0363 protein Y 70.2 51 0.0017 28.9 11.3 27 296-322 132-158 (312)
311 3esl_A Checkpoint serine/threo 70.2 43 0.0015 27.3 12.3 87 233-329 58-146 (202)
312 2nnz_A Hypothetical protein; b 69.8 3 0.0001 32.7 2.9 105 8-150 32-142 (153)
313 3rau_A Tyrosine-protein phosph 68.6 30 0.001 31.1 9.7 118 208-327 113-281 (363)
314 3re2_A Predicted protein; meni 67.8 39 0.0013 30.3 9.7 79 264-342 255-346 (472)
315 4a5x_A MITD1, MIT domain-conta 67.6 6.2 0.00021 27.4 3.9 22 305-326 23-44 (86)
316 4gq4_A Menin; tumor suppressor 66.1 58 0.002 29.8 10.7 79 264-342 262-353 (489)
317 3t5x_A PCI domain-containing p 64.8 12 0.0004 30.7 5.7 55 261-315 11-70 (203)
318 2vkj_A TM1634; membrane protei 64.5 30 0.001 24.0 6.7 44 301-345 56-103 (106)
319 2br9_A 14-3-3E, 14-3-3 protein 62.9 19 0.00065 30.2 6.7 54 228-291 146-200 (234)
320 2vkj_A TM1634; membrane protei 61.1 11 0.00036 26.3 3.9 31 210-240 51-81 (106)
321 2o8p_A 14-3-3 domain containin 60.0 38 0.0013 28.1 8.0 58 225-292 138-196 (227)
322 3u84_A Menin; MLL, JUND, ledgf 59.5 63 0.0022 29.6 9.7 60 283-342 298-368 (550)
323 3t5x_A PCI domain-containing p 59.5 26 0.00088 28.6 6.9 35 298-332 14-48 (203)
324 2cfu_A SDSA1; SDS-hydrolase, l 59.3 13 0.00045 36.4 6.0 52 265-316 450-501 (658)
325 2xs1_A Programmed cell death 6 58.2 43 0.0015 33.1 9.4 119 209-327 124-289 (704)
326 3c3r_A Programmed cell death 6 57.9 44 0.0015 30.1 8.8 119 209-327 139-304 (380)
327 3ubw_A 14-3-3E, 14-3-3 protein 57.9 26 0.0009 29.8 6.7 54 228-291 172-226 (261)
328 2npm_A 14-3-3 domain containin 57.5 27 0.00093 29.7 6.8 54 228-292 172-226 (260)
329 3uzd_A 14-3-3 protein gamma; s 57.4 27 0.00093 29.5 6.7 54 228-291 147-201 (248)
330 1o9d_A 14-3-3-like protein C; 57.0 27 0.00093 29.7 6.7 54 228-291 151-205 (260)
331 1om2_A Protein (mitochondrial 55.3 17 0.00059 25.7 4.4 28 268-295 24-51 (95)
332 4b4t_S RPN3, 26S proteasome re 54.1 10 0.00035 35.9 3.9 70 215-297 234-303 (523)
333 2cfu_A SDSA1; SDS-hydrolase, l 52.9 30 0.001 33.8 7.3 49 298-346 449-497 (658)
334 4b4t_P 26S proteasome regulato 52.0 1.3E+02 0.0045 27.5 11.3 76 262-337 135-219 (445)
335 4gq2_M Nucleoporin NUP120; bet 51.1 23 0.0008 36.3 6.4 52 270-325 816-867 (950)
336 3ph0_C ASCG; type III secretio 50.9 44 0.0015 21.1 6.0 52 266-318 8-60 (61)
337 1zb1_A BRO1 protein; AIP1, BRO 50.8 68 0.0023 29.0 9.0 116 210-327 121-286 (392)
338 3kae_A CDC27, possible protein 50.5 61 0.0021 25.9 7.2 56 265-325 34-89 (242)
339 4gq2_M Nucleoporin NUP120; bet 50.4 38 0.0013 34.7 7.9 71 267-337 843-937 (950)
340 1wfd_A Hypothetical protein 15 50.1 25 0.00084 24.7 4.6 10 320-329 44-53 (93)
341 3ax2_A Mitochondrial import re 49.7 34 0.0012 22.9 4.9 32 268-299 21-52 (73)
342 2rpa_A Katanin P60 ATPase-cont 48.7 54 0.0018 22.2 5.9 26 267-292 15-40 (78)
343 2rpa_A Katanin P60 ATPase-cont 48.6 18 0.00061 24.6 3.5 43 303-345 17-65 (78)
344 3efz_A 14-3-3 protein; 14-3-3, 48.5 45 0.0015 28.4 6.7 58 228-293 168-226 (268)
345 3iqu_A 14-3-3 protein sigma; s 47.9 47 0.0016 27.8 6.7 54 228-291 149-203 (236)
346 2ijq_A Hypothetical protein; s 47.6 98 0.0034 24.1 8.5 58 270-327 38-104 (161)
347 2v6x_A Vacuolar protein sortin 47.6 29 0.00099 23.7 4.6 17 310-326 25-41 (85)
348 2ijq_A Hypothetical protein; s 47.5 60 0.002 25.4 6.8 69 214-292 34-103 (161)
349 3lew_A SUSD-like carbohydrate 47.2 21 0.00072 33.5 5.0 34 260-293 199-232 (495)
350 2cpt_A SKD1 protein, vacuolar 46.1 26 0.00088 25.8 4.3 17 270-286 24-40 (117)
351 3myv_A SUSD superfamily protei 44.4 35 0.0012 31.6 6.0 33 260-292 186-218 (454)
352 2dl1_A Spartin; SPG20, MIT, st 44.2 12 0.00041 27.5 2.2 25 266-290 24-48 (116)
353 3kez_A Putative sugar binding 42.7 36 0.0012 31.5 5.9 33 260-292 192-224 (461)
354 4aez_C MAD3, mitotic spindle c 40.7 1.5E+02 0.0052 24.4 10.0 65 259-329 115-181 (223)
355 3mcx_A SUSD superfamily protei 40.6 39 0.0013 31.4 5.8 34 260-293 198-231 (477)
356 3re2_A Predicted protein; meni 40.2 32 0.0011 30.8 4.6 48 231-291 276-323 (472)
357 2p58_C Putative type III secre 39.6 1E+02 0.0035 22.1 7.6 51 269-320 12-62 (116)
358 3eab_A Spastin; spastin, MIT, 39.4 45 0.0015 23.2 4.4 67 210-276 14-84 (89)
359 4fhn_B Nucleoporin NUP120; pro 39.2 53 0.0018 34.4 7.0 69 266-334 844-936 (1139)
360 3myv_A SUSD superfamily protei 39.0 64 0.0022 29.7 6.9 47 281-327 165-219 (454)
361 3l22_A SUSD superfamily protei 38.4 33 0.0011 31.6 4.8 32 260-291 197-228 (441)
362 3spa_A Mtrpol, DNA-directed RN 38.1 3.7E+02 0.013 28.0 12.5 65 263-327 126-194 (1134)
363 3u84_A Menin; MLL, JUND, ledgf 37.7 36 0.0012 31.1 4.6 48 231-291 298-345 (550)
364 2yhe_A SEC-alkyl sulfatase; hy 43.7 7 0.00024 38.4 0.0 53 265-317 462-514 (668)
365 1wy6_A Hypothetical protein ST 37.2 40 0.0014 25.9 4.1 33 262-294 123-155 (172)
366 2cwy_A Hypothetical protein TT 37.0 66 0.0023 22.5 5.1 62 217-292 6-67 (94)
367 3mcx_A SUSD superfamily protei 36.6 80 0.0027 29.3 7.2 49 280-328 176-232 (477)
368 4gq4_A Menin; tumor suppressor 35.7 40 0.0014 30.8 4.6 48 231-291 283-330 (489)
369 4b4t_O 26S proteasome regulato 35.6 1.5E+02 0.005 26.7 8.6 103 224-327 88-198 (393)
370 3qnk_A Putative lipoprotein; a 35.5 43 0.0015 31.5 5.2 34 260-293 178-211 (517)
371 2qx5_A Nucleoporin NIC96; mRNA 35.5 1.1E+02 0.0036 30.0 8.0 30 301-331 539-570 (661)
372 3kez_A Putative sugar binding 34.6 74 0.0025 29.4 6.6 47 281-327 171-225 (461)
373 2ymb_A MITD1, MIT domain-conta 34.5 8.3 0.00029 32.8 0.0 36 211-246 22-57 (257)
374 3lxu_X Tripeptidyl-peptidase 2 34.2 2.5E+02 0.0086 29.9 10.8 86 259-345 1236-1330(1354)
375 3snx_A SUSD homolog, putative 33.9 63 0.0022 29.9 6.0 34 260-293 187-220 (460)
376 3bu8_A Telomeric repeat-bindin 33.5 1.6E+02 0.0055 24.2 7.4 43 271-313 121-163 (235)
377 2uwj_G Type III export protein 33.2 1.3E+02 0.0046 21.5 6.2 13 306-318 47-59 (115)
378 3lew_A SUSD-like carbohydrate 31.4 95 0.0033 28.9 6.8 31 298-328 203-233 (495)
379 2yin_A DOCK2, dedicator of cyt 31.2 59 0.002 30.0 5.2 97 214-310 37-138 (436)
380 2k9u_B Filamin-binding LIM pro 30.6 29 0.00099 17.7 1.6 20 108-127 1-20 (26)
381 2wvi_A Mitotic checkpoint seri 30.1 2E+02 0.0067 22.5 11.2 65 259-329 61-127 (164)
382 3hdx_A SUSD homolog, SUSD supe 29.7 61 0.0021 30.1 5.1 34 260-293 193-226 (478)
383 3iqc_A FLIS, flagellar protein 29.6 1.3E+02 0.0046 22.4 6.1 38 208-245 32-69 (131)
384 1om2_A Protein (mitochondrial 29.3 49 0.0017 23.4 3.3 37 302-338 24-60 (95)
385 4a1g_A Mitotic checkpoint seri 29.1 2E+02 0.0067 22.1 10.7 65 259-329 66-132 (152)
386 1vh6_A Flagellar protein FLIS; 28.8 1E+02 0.0036 23.5 5.4 40 206-245 27-66 (145)
387 2wm9_A Dedicator of cytokinesi 28.2 44 0.0015 30.7 3.8 99 212-311 11-134 (428)
388 1qsa_A Protein (soluble lytic 27.5 2.5E+02 0.0086 27.0 9.1 107 223-344 225-331 (618)
389 1zx8_A Hypothetical protein TM 26.5 51 0.0018 25.0 3.2 45 101-150 73-123 (136)
390 3jq1_A SUSD superfamily protei 25.7 75 0.0026 29.5 5.0 31 262-292 178-208 (481)
391 2xze_A STAM-binding protein; h 25.6 67 0.0023 24.6 3.8 43 204-246 32-74 (146)
392 2rkl_A Vacuolar protein sortin 24.7 82 0.0028 19.5 3.3 36 207-242 15-50 (53)
393 2zan_A Vacuolar protein sortin 24.5 16 0.00054 33.8 0.0 38 209-246 8-45 (444)
394 1orj_A Flagellar protein FLIS; 24.4 2.2E+02 0.0075 21.2 7.2 41 208-248 25-69 (130)
395 2wpv_A GET4, UPF0363 protein Y 24.2 3.5E+02 0.012 23.4 10.9 108 223-342 24-144 (312)
396 1ixm_A SPO0B, protein (sporula 24.1 2E+02 0.0069 22.9 6.6 26 267-292 35-60 (192)
397 2r17_C Vacuolar protein sortin 23.4 1.7E+02 0.006 25.3 6.4 34 295-328 182-225 (298)
398 3qnk_A Putative lipoprotein; a 22.5 1.6E+02 0.0056 27.4 6.7 30 298-327 182-211 (517)
399 3o10_A Sacsin; all-helical dom 22.4 82 0.0028 23.8 3.8 16 226-241 4-19 (141)
400 3lvg_A Clathrin heavy chain 1; 21.7 0.12 4.2E-06 48.5 -14.5 36 308-343 239-274 (624)
401 3snx_A SUSD homolog, putative 21.6 1.4E+02 0.0048 27.5 5.9 30 298-327 191-220 (460)
402 3i4g_A SUSD-like carbohydrate 21.1 98 0.0034 29.2 4.8 32 261-292 195-226 (528)
403 2ca5_A MXIH; transport protein 20.2 1.3E+02 0.0044 20.6 3.8 23 279-301 25-47 (85)
No 1
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=4.4e-73 Score=529.96 Aligned_cols=341 Identities=49% Similarity=0.824 Sum_probs=314.4
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
||+|||||+|+|++.|+|+||||++.||+||+||++||++.++.+...|+++||+||.||||||||||||||++.++|+|
T Consensus 15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g 94 (370)
T 1ihg_A 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG 94 (370)
T ss_dssp SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence 89999999999999999999999999999999999999998877666688889999999999999999999999889999
Q ss_pred CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (347)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~ 162 (347)
++|+||.+|+||++.++|+++|+|||+|.||||+|||||||+.+.|+||++|+|||+|++|++++++|+.++++. ++|.
T Consensus 95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~ 173 (370)
T 1ihg_A 95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA 173 (370)
T ss_dssp CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877 8999
Q ss_pred cceEeccceecCCCCCCCCCCcCCCCCCCCCCCCCCCCCcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHh
Q 019054 163 ADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242 (347)
Q Consensus 163 ~~v~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~ 242 (347)
.+|.|.+|+++....++.+...+..++.+++++.++.....+.+...+.+..++.+|+.+++.|+|++|+..|++|+++.
T Consensus 174 ~~v~I~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~ 253 (370)
T 1ihg_A 174 KLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV 253 (370)
T ss_dssp SCEEEEEEEEECTTCCCCCSCCSSSCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEEeccCccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 99999999999887777776666788999999999876666788888899999999999999999999999999999976
Q ss_pred hhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054 243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE 322 (347)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~ 322 (347)
+... .....+......+....+|.|+|.||+++++|++|+.+|++|++++|+++++++++|.+|..+|++++|+.+|+
T Consensus 254 ~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~ 331 (370)
T 1ihg_A 254 EGSR--AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK 331 (370)
T ss_dssp HHHH--HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCc--cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5432 11223334457888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 323 KALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 323 ~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|++++|++..++..+..+...++
T Consensus 332 ~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 332 KAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998877653
No 2
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=2.1e-55 Score=363.41 Aligned_cols=171 Identities=59% Similarity=1.014 Sum_probs=163.7
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
||+|||||+|++++.|+|+||||++.||+||+||++||++.++.+...|+++||+||.||||+|+|||||||++.++|+|
T Consensus 6 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g 85 (177)
T 1a58_A 6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTG 85 (177)
T ss_dssp CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSC
T ss_pred CcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCC
Confidence 79999999999999999999999999999999999999987766544567789999999999999999999998889999
Q ss_pred CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (347)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~ 162 (347)
++|+||..|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|+.++++.+++|.
T Consensus 86 g~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~ 165 (177)
T 1a58_A 86 GESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL 165 (177)
T ss_dssp CCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred CCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cceEeccceec
Q 019054 163 ADVTITDCGEI 173 (347)
Q Consensus 163 ~~v~I~~~g~~ 173 (347)
.+|.|.+|+.+
T Consensus 166 ~~v~I~~~G~l 176 (177)
T 1a58_A 166 ADVVILNCGEL 176 (177)
T ss_dssp SCEEEEEEEEE
T ss_pred CCeEEEEeEEE
Confidence 99999999986
No 3
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=2.3e-55 Score=361.89 Aligned_cols=172 Identities=61% Similarity=1.093 Sum_probs=163.0
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (347)
|+||+|||||++++++.|+|+||||++.||+||+||++||++.++++. .++++||+|+.||||+|+|||||||++.++|
T Consensus 1 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G 79 (173)
T 2igv_A 1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGK-SGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG 79 (173)
T ss_dssp CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred CCCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCc-cCccceECCCEEEEEECCCEEEcCCCCCCCC
Confidence 899999999999999999999999999999999999999998665543 4788899999999999999999999988899
Q ss_pred CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
+|++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+.+++.. ++
T Consensus 80 ~gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~-~~ 158 (173)
T 2igv_A 80 TGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GK 158 (173)
T ss_dssp SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-SC
T ss_pred CCCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998854 89
Q ss_pred cccceEeccceecC
Q 019054 161 PIADVTITDCGEIP 174 (347)
Q Consensus 161 P~~~v~I~~~g~~~ 174 (347)
|..+|.|.+|+.+.
T Consensus 159 P~~~v~I~~~g~l~ 172 (173)
T 2igv_A 159 PVKDCMIADCGQLK 172 (173)
T ss_dssp CSSCEEEEEEEEEC
T ss_pred CCCCEEEEEeEEEc
Confidence 99999999999873
No 4
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=3.4e-55 Score=362.47 Aligned_cols=172 Identities=60% Similarity=1.030 Sum_probs=165.0
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (347)
.||+|||||+|++++.|+|+||||++.||+||+||++||++.++.+...++..||+|+.||||+|+|||||||++.++|+
T Consensus 8 ~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~ 87 (179)
T 2wfi_A 8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGR 87 (179)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred CCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCC
Confidence 39999999999999999999999999999999999999999887766667888999999999999999999999888999
Q ss_pred CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054 82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (347)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P 161 (347)
|++|+||..|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|++++++..++|
T Consensus 88 gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P 167 (179)
T 2wfi_A 88 GGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKP 167 (179)
T ss_dssp CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCB
T ss_pred CCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred ccceEeccceec
Q 019054 162 IADVTITDCGEI 173 (347)
Q Consensus 162 ~~~v~I~~~g~~ 173 (347)
..+|.|.+|+.+
T Consensus 168 ~~~v~I~~~G~l 179 (179)
T 2wfi_A 168 FAEVRILSCGEL 179 (179)
T ss_dssp SSCEEEEEEEEC
T ss_pred CCCeEEEeCeeC
Confidence 999999999875
No 5
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.8e-55 Score=363.41 Aligned_cols=174 Identities=56% Similarity=0.961 Sum_probs=165.7
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (347)
+.||+|||||+|++++.|+|+||||++.||+||+||++||++.++.+...++..||+|+.||||+|+|||||||++.++|
T Consensus 17 ~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G 96 (192)
T 2he9_A 17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNG 96 (192)
T ss_dssp --CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred cCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCC
Confidence 35899999999999999999999999999999999999999988776666788899999999999999999999988899
Q ss_pred CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
+|++|+||.+|+||++.++|+++|+|||||.+||+|+|||||++.+.|+||++|+|||+|++||++|++|+.++++..++
T Consensus 97 ~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~ 176 (192)
T 2he9_A 97 KGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASR 176 (192)
T ss_dssp SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred CCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred cccceEeccceecC
Q 019054 161 PIADVTITDCGEIP 174 (347)
Q Consensus 161 P~~~v~I~~~g~~~ 174 (347)
|..+|+|.+|+++.
T Consensus 177 P~~~v~I~~~g~l~ 190 (192)
T 2he9_A 177 PYADVRVIDCGVLA 190 (192)
T ss_dssp BSSCEEEEEEEECC
T ss_pred CcCCeEEEEeEEEc
Confidence 99999999999884
No 6
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=7.1e-54 Score=355.49 Aligned_cols=169 Identities=61% Similarity=0.986 Sum_probs=159.2
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (347)
.||+|||||++++++.|+|+||||++.||+||+||++||++.++++. .+++++|+|+.||||+|+|||||||++.++|+
T Consensus 18 ~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~-~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~ 96 (186)
T 2poy_A 18 GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGT 96 (186)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred CCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccc-cCccceECCCEEEEEeCCCEEEeCCCCCCCCC
Confidence 58999999999999999999999999999999999999998666654 47888999999999999999999999888999
Q ss_pred CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054 82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (347)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P 161 (347)
|++|+||.+|+||++.++|.++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|+.+++. +++|
T Consensus 97 gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~~~P 175 (186)
T 2poy_A 97 GGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ-NGKP 175 (186)
T ss_dssp CCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSCC
T ss_pred CCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984 4899
Q ss_pred ccceEecccee
Q 019054 162 IADVTITDCGE 172 (347)
Q Consensus 162 ~~~v~I~~~g~ 172 (347)
..+|+|.+||.
T Consensus 176 ~~~v~I~~cG~ 186 (186)
T 2poy_A 176 TKSVCITASGV 186 (186)
T ss_dssp SSCEEEEEEEC
T ss_pred CCCEEEEeCCC
Confidence 99999999984
No 7
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=8e-54 Score=351.66 Aligned_cols=169 Identities=59% Similarity=0.999 Sum_probs=158.4
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (347)
.||+|||||+|++++.|+|+||||++.||+||+||++||++. +++. .+++++|+||.||||+|+|||||||++.++|+
T Consensus 2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~ 79 (170)
T 1qng_A 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGS-RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS 79 (170)
T ss_dssp CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECT-TSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCc-cCccceECCCEEEEEECCCEEEcCCccCCCCC
Confidence 489999999999999999999999999999999999999863 2322 46777799999999999999999999888999
Q ss_pred CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054 82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (347)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P 161 (347)
|++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+++++ .+++|
T Consensus 80 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P 158 (170)
T 1qng_A 80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYV 158 (170)
T ss_dssp CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCC
T ss_pred CCccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55899
Q ss_pred ccceEeccceec
Q 019054 162 IADVTITDCGEI 173 (347)
Q Consensus 162 ~~~v~I~~~g~~ 173 (347)
..+|.|.+|+.+
T Consensus 159 ~~~v~I~~cG~l 170 (170)
T 1qng_A 159 KRSVVITDCGEL 170 (170)
T ss_dssp SSCEEEEEEEEC
T ss_pred CCCeEEEeceeC
Confidence 999999999975
No 8
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=1.9e-53 Score=347.70 Aligned_cols=163 Identities=59% Similarity=0.983 Sum_probs=154.9
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD 79 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~ 79 (347)
|+||+|||||++++++.|+|+||||++.||+||+||++||++.++ | |+|+.||||+|+|||||||++.++
T Consensus 1 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~ 71 (165)
T 2z6w_A 1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG---------FGYKGSTFHRVIPSFMCQAGDFTNHN 71 (165)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred CCCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCC---------ccCcCCEEEEEECCCEEEeCCccCCC
Confidence 889999999999999999999999999999999999999996532 6 999999999999999999998889
Q ss_pred CCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCC
Q 019054 80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~ 159 (347)
|+|++|+||.+|+||++.++|.++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|+.+++ .++
T Consensus 72 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~ 150 (165)
T 2z6w_A 72 GTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSG 150 (165)
T ss_dssp SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTS
T ss_pred CCCCCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 458
Q ss_pred ccccceEeccceec
Q 019054 160 CPIADVTITDCGEI 173 (347)
Q Consensus 160 ~P~~~v~I~~~g~~ 173 (347)
+|..+|.|.+|+.+
T Consensus 151 ~P~~~v~I~~~g~l 164 (165)
T 2z6w_A 151 RTSKKIVITDCGQL 164 (165)
T ss_dssp CCSSCEEEEEEEEC
T ss_pred CCCCcEEEEEeEEE
Confidence 99999999999987
No 9
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=3e-53 Score=350.16 Aligned_cols=169 Identities=58% Similarity=0.988 Sum_probs=160.4
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (347)
.||+|||||++++++.|+|+||||++.||+||+||++||+++.+. .|++++|+|+.||||+|+|||||||++.++|+
T Consensus 9 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~---~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~ 85 (177)
T 1mzw_A 9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT 85 (177)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred CCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC---cCccceECCCEEEEEECCCEEEcCCcccCCCC
Confidence 389999999999999999999999999999999999999987533 25667799999999999999999999888999
Q ss_pred CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054 82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (347)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P 161 (347)
|++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|+.++++.+++|
T Consensus 86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P 165 (177)
T 1mzw_A 86 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP 165 (177)
T ss_dssp CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred CCCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred ccceEeccceec
Q 019054 162 IADVTITDCGEI 173 (347)
Q Consensus 162 ~~~v~I~~~g~~ 173 (347)
..+|.|.+|+.+
T Consensus 166 ~~~v~I~~cG~l 177 (177)
T 1mzw_A 166 KLPVVISQCGEM 177 (177)
T ss_dssp SSCEEEEEEEEC
T ss_pred CCCEEEEeceeC
Confidence 999999999975
No 10
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=6.3e-53 Score=346.26 Aligned_cols=163 Identities=60% Similarity=1.000 Sum_probs=154.8
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD 79 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~ 79 (347)
|.||+|||||++++++.|+|+||||++.||+||+||++||++.++ | |+|+.||||+|+|||||||++.++
T Consensus 8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~ 78 (172)
T 2cmt_A 8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERG---------FGYHNCCFHRVIPQFMCQGGDFVKGD 78 (172)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCC---------ceECCCEEEEEECCCEEEcCCccCCC
Confidence 569999999999999999999999999999999999999987432 5 999999999999999999998889
Q ss_pred CCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCC
Q 019054 80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~ 159 (347)
|+|++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+.+++.. +
T Consensus 79 G~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~-~ 157 (172)
T 2cmt_A 79 GTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKS-G 157 (172)
T ss_dssp SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTT-C
T ss_pred CCCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998854 8
Q ss_pred ccccceEeccceec
Q 019054 160 CPIADVTITDCGEI 173 (347)
Q Consensus 160 ~P~~~v~I~~~g~~ 173 (347)
+|..+|+|.+|+.+
T Consensus 158 ~P~~~v~I~~~g~l 171 (172)
T 2cmt_A 158 KVKEPVIISRCGEL 171 (172)
T ss_dssp CCSSCEEEEEEEEE
T ss_pred CCCCCEEEEEeEeE
Confidence 99999999999986
No 11
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=1.2e-52 Score=345.34 Aligned_cols=164 Identities=57% Similarity=0.956 Sum_probs=154.8
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (347)
|.||+|||||++++++.|+|+||||++.||+||+||++||++.+++ +|+|+.||||+|+|||||||++.++|
T Consensus 9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g 80 (173)
T 2r99_A 9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF--------GFKGSSFHRIIPQFMCQGGDFTNHNG 80 (173)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCc--------eecCCEEEEeeCCCEEEeCCcCCCCC
Confidence 5699999999999999999999999999999999999999864321 39999999999999999999988899
Q ss_pred CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
+|++|+||..|+||++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|+.++++. ++
T Consensus 81 ~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~-~~ 159 (173)
T 2r99_A 81 TGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD-GK 159 (173)
T ss_dssp SCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CC
T ss_pred CCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998865 79
Q ss_pred cccceEeccceec
Q 019054 161 PIADVTITDCGEI 173 (347)
Q Consensus 161 P~~~v~I~~~g~~ 173 (347)
|..+|+|.+|+.+
T Consensus 160 P~~~v~I~~cG~l 172 (173)
T 2r99_A 160 PKQKVIIADCGEY 172 (173)
T ss_dssp CSSCEEEEEEEEC
T ss_pred CCCCeEEEEeeeE
Confidence 9999999999986
No 12
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=5.8e-53 Score=345.64 Aligned_cols=163 Identities=56% Similarity=0.907 Sum_probs=155.4
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD 79 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~ 79 (347)
|.+|+|||||++++++.|+|+||||++.||+||+||++||++.++ | |+||.||||+|+|||||||+..++
T Consensus 9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~ 79 (172)
T 2haq_A 9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG---------FGYKDSIFHRVIQNFMIQGGDFTNFD 79 (172)
T ss_dssp CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBCCEEETTTEEEECCTTTSS
T ss_pred CCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEECCCEEecCCccCCC
Confidence 578999999999999999999999999999999999999976432 6 999999999999999999987789
Q ss_pred CCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCC
Q 019054 80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~ 159 (347)
|+|++|+||.+|+||++.++|. +|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|++++++.++
T Consensus 80 g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~ 158 (172)
T 2haq_A 80 GTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHD 158 (172)
T ss_dssp SSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred CCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCC
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999998888
Q ss_pred ccccceEeccceec
Q 019054 160 CPIADVTITDCGEI 173 (347)
Q Consensus 160 ~P~~~v~I~~~g~~ 173 (347)
+|..+|+|.+|+.+
T Consensus 159 ~P~~~v~I~~~g~l 172 (172)
T 2haq_A 159 RPVKPVKIVASGEL 172 (172)
T ss_dssp CBSSCEEEEEEEEC
T ss_pred cCCCCeEEEEeEEC
Confidence 99999999999874
No 13
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=1.6e-52 Score=342.55 Aligned_cols=162 Identities=57% Similarity=0.952 Sum_probs=155.3
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGDG 80 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (347)
+||+|||||++++++.|+|+||||++.||+||+||++||+++++ | |+|+.||||+|+|||||||+..++|
T Consensus 1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~g 71 (164)
T 3pmp_A 1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHG---------FGYKDSIFHRVIPQFMLQGGDFTRHNG 71 (164)
T ss_dssp CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCC---------CcccCCEEEEEECCCeEEeCCCCCCCC
Confidence 58999999999999999999999999999999999999996532 5 9999999999999999999888899
Q ss_pred CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
+|++|+||.+|+||++.++|+++|+|||||.+|++++|||||++.+.|+||++|+|||+|++||+++++|++++++ +++
T Consensus 72 ~gg~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~ 150 (164)
T 3pmp_A 72 TGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGK 150 (164)
T ss_dssp SCCCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCC
T ss_pred CCCcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 489
Q ss_pred cccceEeccceec
Q 019054 161 PIADVTITDCGEI 173 (347)
Q Consensus 161 P~~~v~I~~~g~~ 173 (347)
|..+|+|.+|+++
T Consensus 151 P~~~v~I~~cg~l 163 (164)
T 3pmp_A 151 TNATIKITDCGTV 163 (164)
T ss_dssp CSSCEEEEEEEEC
T ss_pred cccCEEEEeCeEE
Confidence 9999999999986
No 14
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=1.4e-52 Score=356.75 Aligned_cols=169 Identities=49% Similarity=0.929 Sum_probs=161.0
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (347)
.||+|||||++++++.|+|+||||++.||+||+||++||+++++.+ |+++||+||.||||+|+|||||||++.++|+
T Consensus 58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~---g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~ 134 (229)
T 1z81_A 58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN---NLPVGYKNTIFHRVIKEFMIQGGDFINHNGS 134 (229)
T ss_dssp TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS---SSBCSSTTEECCEEETTTEEEECCTTTSSSC
T ss_pred CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc---CCCceECCCEEEEEeCCCEEEcCCCcCCCCC
Confidence 3899999999999999999999999999999999999999876543 6778999999999999999999999888999
Q ss_pred CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEE--eChHHHHHHhcccCCCC-
Q 019054 82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGDN- 158 (347)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~--~g~~vl~~I~~~~~~~~- 158 (347)
|++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|+ +||++|++|++++++..
T Consensus 135 Gg~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~ 214 (229)
T 1z81_A 135 GSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI 214 (229)
T ss_dssp CCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTT
T ss_pred CCCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 99999999999999887
Q ss_pred CccccceEeccceec
Q 019054 159 DCPIADVTITDCGEI 173 (347)
Q Consensus 159 ~~P~~~v~I~~~g~~ 173 (347)
++|..+|+|.+|+.+
T Consensus 215 ~~P~~~V~I~~cG~l 229 (229)
T 1z81_A 215 YKPKIPINVVECGEL 229 (229)
T ss_dssp CCBSSCEEEEEEEEC
T ss_pred CCCCCCeEEEeCeeC
Confidence 899999999999975
No 15
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=3.7e-52 Score=346.18 Aligned_cols=163 Identities=59% Similarity=0.998 Sum_probs=155.9
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGDGT 81 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (347)
+++|||||++++++.|+|+||||++.||+||+||++||++.++ | |+|+.||||+|+|||||||+..++|+
T Consensus 15 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~g~ 85 (188)
T 3ich_A 15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG---------FGYKNSKFHRVIKDFMIQGGDFTRGDGT 85 (188)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred CCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCC---------ccccCCEEEEEECCCEEEcCCccCCCCC
Confidence 6799999999999999999999999999999999999986432 6 99999999999999999998778999
Q ss_pred CCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054 82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (347)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P 161 (347)
|++|+||..|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+.++++.+++|
T Consensus 86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P 165 (188)
T 3ich_A 86 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKP 165 (188)
T ss_dssp CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred CCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred ccceEeccceecC
Q 019054 162 IADVTITDCGEIP 174 (347)
Q Consensus 162 ~~~v~I~~~g~~~ 174 (347)
..+|.|.+|+++.
T Consensus 166 ~~~v~I~~~~~l~ 178 (188)
T 3ich_A 166 LKDVIIADCGKIE 178 (188)
T ss_dssp SSCEEEEEEEEEE
T ss_pred CCCEEEEEeEEEe
Confidence 9999999999883
No 16
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=8.8e-52 Score=343.13 Aligned_cols=164 Identities=59% Similarity=0.983 Sum_probs=155.3
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (347)
|.||+|||||++++++.|+|+||||++.||+||+||++||++++++ .|+|+.||||+|+|||||||+..++|
T Consensus 20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g 91 (184)
T 3rdd_A 20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGF--------GYKGSCFHRIIPGFMCQGGDFTRHNG 91 (184)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------SSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCc--------ccCCCEEEEccCCcEEEeCCCCCCCC
Confidence 5799999999999999999999999999999999999999886422 19999999999999999999888899
Q ss_pred CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
+|++++||..|+||++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|+++++. +++
T Consensus 92 ~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g~ 170 (184)
T 3rdd_A 92 TGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NGK 170 (184)
T ss_dssp SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSC
T ss_pred CCCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875 489
Q ss_pred cccceEeccceec
Q 019054 161 PIADVTITDCGEI 173 (347)
Q Consensus 161 P~~~v~I~~~g~~ 173 (347)
|..+|+|.+|+++
T Consensus 171 P~~~v~I~~cG~l 183 (184)
T 3rdd_A 171 TSKKITIADCGQL 183 (184)
T ss_dssp CSSCEEEEEEEEC
T ss_pred CcCCeEEEeCeEE
Confidence 9999999999987
No 17
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=9.6e-52 Score=344.32 Aligned_cols=164 Identities=59% Similarity=0.998 Sum_probs=157.4
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
+|+|||||++++++.|+|+||||++.||+||+||++||+++++. ||+|+.||||+|+|||||||++.++|+|
T Consensus 12 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g~g 83 (185)
T 4fru_A 12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGF--------GYKDSKFHRVIKDFMIQGGDFTRGDGTG 83 (185)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------CSTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred CcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCC--------eEcCCEEEEeeCCCeEEECCCCCCCCCC
Confidence 68999999999999999999999999999999999999875322 6999999999999999999999889999
Q ss_pred CCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (347)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~ 162 (347)
+.++||..|+||++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||+++++|++++++.+++|.
T Consensus 84 g~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~ 163 (185)
T 4fru_A 84 GKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPL 163 (185)
T ss_dssp CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred CccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cceEeccceecC
Q 019054 163 ADVTITDCGEIP 174 (347)
Q Consensus 163 ~~v~I~~~g~~~ 174 (347)
.+|+|.+|+++.
T Consensus 164 ~~v~I~~~g~l~ 175 (185)
T 4fru_A 164 KDVTIADCGKIE 175 (185)
T ss_dssp SCEEEEEEEEEE
T ss_pred CCEEEEEceEEe
Confidence 999999999884
No 18
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=2.3e-51 Score=342.88 Aligned_cols=165 Identities=52% Similarity=0.872 Sum_probs=156.1
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (347)
|+||+|||||++++++.|+|+||||++.||+||+||++||+++++. +|+|+.||||+|+|||||||+..++|
T Consensus 25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g 96 (193)
T 3k2c_A 25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGE--------GYKGSTFHRIIPGFMVQGGDYTAHNG 96 (193)
T ss_dssp -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTS--------SSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCC--------cccCCEEEEEeCCCEEEeCCCCCCCC
Confidence 5799999999999999999999999999999999999999976422 29999999999999999999888899
Q ss_pred CCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
+|+.|+||..|+||++.++|+++|+|||||.+|++++|||||++++.|+||++|+|||+|++||++|++|++++++. ++
T Consensus 97 ~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~-g~ 175 (193)
T 3k2c_A 97 TGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSES-GQ 175 (193)
T ss_dssp SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CC
T ss_pred cCCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985 78
Q ss_pred cc--cceEeccceecC
Q 019054 161 PI--ADVTITDCGEIP 174 (347)
Q Consensus 161 P~--~~v~I~~~g~~~ 174 (347)
|. .+|+|.+|+++.
T Consensus 176 P~~~~~v~I~~cG~l~ 191 (193)
T 3k2c_A 176 VKKGYRIEIRDCGVLG 191 (193)
T ss_dssp CCTTCCEEEEEEEECC
T ss_pred CccCccEEEEEceEeC
Confidence 88 999999999985
No 19
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=1.1e-50 Score=333.28 Aligned_cols=160 Identities=54% Similarity=0.929 Sum_probs=121.7
Q ss_pred eEEEEEEEC--Ceee---eeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCccc-ccCCeeEEEecCceEEeccCCCC
Q 019054 5 RCFLDISIG--VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAG 78 (347)
Q Consensus 5 ~v~~~~~~~--~~~~---G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~ 78 (347)
+|||||+++ |... |+|+||||++.||+||+||++||++.++ + |+|+.||||+|+|||||||+..+
T Consensus 4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~ 74 (172)
T 2c3b_A 4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG---------EGYRESTFHRIIPNFMIQGGDFTRG 74 (172)
T ss_dssp CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT---------TSSTTCBCCEEETTTEEEECC----
T ss_pred EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEeCCCEEEeCCcCCC
Confidence 799999999 8766 9999999999999999999999996542 5 99999999999999999997778
Q ss_pred CCCCCCcccCCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEe--ChHHHHHHhcccCC
Q 019054 79 DGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHVMTG 156 (347)
Q Consensus 79 ~~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~--g~~vl~~I~~~~~~ 156 (347)
+|+|++|+||.+|+||++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++ ||+++++|++++++
T Consensus 75 ~g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~ 154 (172)
T 2c3b_A 75 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS 154 (172)
T ss_dssp ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred CCCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred CCC-ccccceEeccceec
Q 019054 157 DND-CPIADVTITDCGEI 173 (347)
Q Consensus 157 ~~~-~P~~~v~I~~~g~~ 173 (347)
..+ +|..+|+|.+|+.+
T Consensus 155 ~~~~~P~~~v~I~~cG~l 172 (172)
T 2c3b_A 155 SGSVRSNTRPKIVNCGEL 172 (172)
T ss_dssp TSCCCSSSCCEEEEEEEC
T ss_pred CCCccCCCCeEEEeCeeC
Confidence 754 99999999999974
No 20
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=5.3e-50 Score=343.70 Aligned_cols=176 Identities=28% Similarity=0.532 Sum_probs=153.7
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCC---------CCCCcccccCCeeEEEecCceEEe
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP---------NTGVPLHYKGVRFHRVIKGFMIQG 72 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~---------~~~~~~~y~g~~~~rv~~~~~iq~ 72 (347)
.||+|||||+|++++.|+|+||||.+.||+||+||++||++.+.+.. ..|++..|+||.||||+|+|||||
T Consensus 13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQg 92 (234)
T 2ose_A 13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVS 92 (234)
T ss_dssp SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEE
T ss_pred CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEc
Confidence 58999999999999999999999999999999999999997633210 013333499999999999999999
Q ss_pred ccCCCCCCCCCCcccCCC-----CCCCccccCCCCccEEEeee----CCCCCCCceEEEecCC------CCCCCCCCcee
Q 019054 73 GDISAGDGTGGESIYGLK-----FEDENFELKHERKGMLSMAN----AGPNTNGSQFFITTTR------TSHLDGKHVVF 137 (347)
Q Consensus 73 G~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~g~~~~~~----~~~~~~~sqF~i~~~~------~~~l~~~~~vf 137 (347)
||+..++|+|++|+||.. |+ ++.++|+++|+||||| .||||+||||||++.+ .|+||++|+||
T Consensus 93 Gd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVF 170 (234)
T 2ose_A 93 GDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVI 170 (234)
T ss_dssp CCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEE
T ss_pred CCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEE
Confidence 998778999999999998 76 5789999999999999 8999999999999999 89999999999
Q ss_pred eEEEeChHHHHHHhcccCCCCCccccceEeccceecCCCCCC
Q 019054 138 GRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADD 179 (347)
Q Consensus 138 G~v~~g~~vl~~I~~~~~~~~~~P~~~v~I~~~g~~~~~~~~ 179 (347)
|+|++||++|++|+.++++.+++|..+|.|.+|+++..++++
T Consensus 171 G~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~p~~~ 212 (234)
T 2ose_A 171 GQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLDSSQA 212 (234)
T ss_dssp EEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCCHHHH
T ss_pred EEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecCCccc
Confidence 999999999999999999988999999999999999765443
No 21
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=2.1e-48 Score=317.93 Aligned_cols=155 Identities=50% Similarity=0.838 Sum_probs=147.3
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (347)
.++.|.|+++ .|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+
T Consensus 10 ~~~~v~l~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~ 72 (166)
T 2x7k_A 10 QPPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGR 72 (166)
T ss_dssp CCSEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEECCTT-SSSS
T ss_pred CCCEEEEEeC-----CCcEEEEEccCCCCHHHHHHHHHHhcC-----------CCCCCEEEEEECCCEEEcCCCC-CCCC
Confidence 4688999988 799999999999999999999999987 8999999999999999999987 7899
Q ss_pred CCCcccCCCCCCCc-cccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 82 GGESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 82 ~~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
|++|+||.+|+||+ +.++|.++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|+.++++..++
T Consensus 73 gg~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~ 152 (166)
T 2x7k_A 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR 152 (166)
T ss_dssp CCCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSC
T ss_pred CCCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCC
Confidence 99999999999998 48999999999999999999999999999999999999999999999999999999999998889
Q ss_pred cccceEeccceec
Q 019054 161 PIADVTITDCGEI 173 (347)
Q Consensus 161 P~~~v~I~~~g~~ 173 (347)
|..+|+|.++.++
T Consensus 153 P~~~i~I~~~~i~ 165 (166)
T 2x7k_A 153 PVDDVKIIKAYPS 165 (166)
T ss_dssp BSSCCEEEEEEEC
T ss_pred cCCCeEEEEEEEe
Confidence 9999999998765
No 22
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=2.8e-48 Score=316.18 Aligned_cols=156 Identities=47% Similarity=0.761 Sum_probs=146.3
Q ss_pred EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES 85 (347)
Q Consensus 6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (347)
|.|+++ .|+|+||||++.||+||+||++||+++ ||+|+.||||+|+|||||||+. ++|+|++|
T Consensus 3 v~~~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~s 65 (161)
T 2ok3_A 3 VTLHTD-----VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNS 65 (161)
T ss_dssp EEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCC
T ss_pred EEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhhhc-----------ccCCCEEEEEECCCEEecCCCC-CCCCCCCc
Confidence 555554 899999999999999999999999987 8999999999999999999987 78999999
Q ss_pred ccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCC-Ccccc
Q 019054 86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIA 163 (347)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~-~~P~~ 163 (347)
+||.+|+||+. .++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|++++++.. ++|..
T Consensus 66 i~g~~~~dE~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~ 145 (161)
T 2ok3_A 66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLN 145 (161)
T ss_dssp TTSSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSS
T ss_pred ccCCccccccCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCC
Confidence 99999999986 78999999999999999999999999999999999999999999999999999999999887 89999
Q ss_pred ceEeccceecCCCCC
Q 019054 164 DVTITDCGEIPEGAD 178 (347)
Q Consensus 164 ~v~I~~~g~~~~~~~ 178 (347)
+|.|.++.++..+++
T Consensus 146 ~v~I~~~~i~~~Pf~ 160 (161)
T 2ok3_A 146 DVHIKDITIHANPFA 160 (161)
T ss_dssp CCBEEEEEEECCSCC
T ss_pred CeEEEEEEEecCCCC
Confidence 999999999976654
No 23
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=3.6e-48 Score=321.35 Aligned_cols=159 Identities=43% Similarity=0.707 Sum_probs=146.4
Q ss_pred EEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCccc
Q 019054 8 LDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIY 87 (347)
Q Consensus 8 ~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~ 87 (347)
+++.+. ++.|+|+||||++.||+||+||++||+++ ||+|+.||||+|+|||||||++ ++|+|++|+|
T Consensus 17 ~~v~i~-t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~ 83 (185)
T 2poe_A 17 QGVRII-TNYGDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIY 83 (185)
T ss_dssp CEEEEE-ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTEEEEEECTTSEEEEEETT-SSSSCCCBTT
T ss_pred eEEEEE-ecCccEEEEEeCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCCEEEcCCCC-CCCCCCCccC
Confidence 334443 55899999999999999999999999987 8999999999999999999987 7899999999
Q ss_pred CCCCCCCc-cccCCCCccEEEeeeCC----CCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCccc
Q 019054 88 GLKFEDEN-FELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (347)
Q Consensus 88 ~~~~~~e~-~~~~~~~~g~~~~~~~~----~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P~ 162 (347)
|.+|+||+ +.++|+++|+|||||.+ |||++|||||++.+.|+||++|+|||+|++||++|++|+.++++.+++|.
T Consensus 84 g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~ 163 (185)
T 2poe_A 84 GRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPI 163 (185)
T ss_dssp BSCBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBS
T ss_pred CCcccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcC
Confidence 99999998 78999999999999999 99999999999999999999999999999999999999999998889999
Q ss_pred cceEeccceecCCCCCC
Q 019054 163 ADVTITDCGEIPEGADD 179 (347)
Q Consensus 163 ~~v~I~~~g~~~~~~~~ 179 (347)
.+|.|.+|.++..++++
T Consensus 164 ~~v~I~~~~i~~dPf~d 180 (185)
T 2poe_A 164 DEIIIKDIVIHSNPIAD 180 (185)
T ss_dssp SCCEEEEEEEECCC---
T ss_pred CCeEEEEEEEECCCCCC
Confidence 99999999999766654
No 24
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=4.2e-48 Score=322.73 Aligned_cols=156 Identities=47% Similarity=0.701 Sum_probs=146.3
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
++.|.|+++ .|+|+||||++.||+||+||++||+.+ ||+||.||||+|+|||||||++ ++|+|
T Consensus 38 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRVi~~f~iQgGd~~-~~g~g 100 (196)
T 2b71_A 38 RGYITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGDPT-GTGKG 100 (196)
T ss_dssp SCEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEEEETT-SSSSC
T ss_pred CcEEEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence 578899887 799999999999999999999999987 8999999999999999999997 78999
Q ss_pred CCcccCCCCCCCc-cccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054 83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (347)
Q Consensus 83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P 161 (347)
++|+||.+|+||. +.++|+++|+||||+.||||+||||||++++.|+||++|+|||+|++||++|++|+.++++..++|
T Consensus 101 g~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P 180 (196)
T 2b71_A 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP 180 (196)
T ss_dssp CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCB
T ss_pred CCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCC
Confidence 9999999999995 589999999999999999999999999999999999999999999999999999999999888999
Q ss_pred ccceEeccceecCC
Q 019054 162 IADVTITDCGEIPE 175 (347)
Q Consensus 162 ~~~v~I~~~g~~~~ 175 (347)
..+|.|.+|.++..
T Consensus 181 ~~~i~I~~~~i~~d 194 (196)
T 2b71_A 181 IFDLKILRTSTAVN 194 (196)
T ss_dssp SSCCEEEEEEC---
T ss_pred CCCeEEEEEEEecC
Confidence 99999999998753
No 25
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=5.1e-48 Score=313.69 Aligned_cols=154 Identities=47% Similarity=0.700 Sum_probs=145.1
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
.+.|.++++ .|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||+. ++|+|
T Consensus 5 ~~~v~~~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~g 67 (160)
T 2fu0_A 5 PKSAIIYTT-----MGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS-GDGTG 67 (160)
T ss_dssp CCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSC
T ss_pred CCEEEEEec-----CccEEEEEeCCCChHHHHHHHHHhccC-----------ccCCCEEEEEECCCEEEeCCcC-CCCCC
Confidence 456777776 799999999999999999999999987 8999999999999999999986 78999
Q ss_pred CCcccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCcc
Q 019054 83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (347)
Q Consensus 83 ~~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~P 161 (347)
++|+||.+|+||++ .++|.++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|++++++.+++|
T Consensus 68 g~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P 147 (160)
T 2fu0_A 68 GESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKP 147 (160)
T ss_dssp CCCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred CCcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCc
Confidence 99999999999998 69999999999999999999999999999999999999999999999999999999999988999
Q ss_pred ccceEeccceec
Q 019054 162 IADVTITDCGEI 173 (347)
Q Consensus 162 ~~~v~I~~~g~~ 173 (347)
..+|.|.++.+.
T Consensus 148 ~~~v~I~~~~v~ 159 (160)
T 2fu0_A 148 LEDIKILNIKIN 159 (160)
T ss_dssp SSCCBEEEEEEC
T ss_pred CCCeEEEEEEEe
Confidence 999999988764
No 26
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=7.4e-48 Score=321.07 Aligned_cols=158 Identities=43% Similarity=0.724 Sum_probs=147.1
Q ss_pred CeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCC
Q 019054 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG 83 (347)
Q Consensus 4 ~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~ 83 (347)
..|.|+++ .|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+|+
T Consensus 20 ~~v~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg 82 (197)
T 1zkc_A 20 GYVRLHTN-----KGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGG 82 (197)
T ss_dssp EEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEECCTT-SSSSCC
T ss_pred cEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCCEEEcCCCC-CCCCCC
Confidence 45666655 799999999999999999999999987 8999999999999999999987 789999
Q ss_pred CcccCCCCCCC-ccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCC-Ccc
Q 019054 84 ESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCP 161 (347)
Q Consensus 84 ~~~~~~~~~~e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~-~~P 161 (347)
+|+||.+|+|| ++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+.++++.. ++|
T Consensus 83 ~si~g~~f~dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P 162 (197)
T 1zkc_A 83 ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRP 162 (197)
T ss_dssp CBTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCB
T ss_pred CccCCCccccccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCc
Confidence 99999999999 5789999999999999999999999999999999999999999999999999999999999886 899
Q ss_pred ccceEeccceecCCCCC
Q 019054 162 IADVTITDCGEIPEGAD 178 (347)
Q Consensus 162 ~~~v~I~~~g~~~~~~~ 178 (347)
..+|.|.+|+++..+++
T Consensus 163 ~~~i~I~~~~v~~dPf~ 179 (197)
T 1zkc_A 163 KEEIRIDATTVFVDPYE 179 (197)
T ss_dssp SSCCEEEEEEEEECTTH
T ss_pred CCCeEEEEEEEEcCCcc
Confidence 99999999999865443
No 27
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=2.1e-47 Score=319.43 Aligned_cols=161 Identities=48% Similarity=0.818 Sum_probs=151.6
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (347)
.++.|.|+++ .|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+
T Consensus 10 ~~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~F~iQgGd~~-~~g~ 72 (203)
T 2k7n_A 10 QPPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGR 72 (203)
T ss_dssp CCSEEEEEES-----SCEEEEEECTTTCTTHHHHHHHHHHHT-----------CGGGCEEEEEETTTEEEEECSS-SSSS
T ss_pred CCCEEEEEeC-----CCcEEEEEccCCCcHHHHHHHHHHhcC-----------ccCCCEEEEEeCCcEEEcCCCC-CCCC
Confidence 4688999988 699999999999999999999999987 8999999999999999999987 7889
Q ss_pred CCCcccCCCCCCCc-cccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCCCCCc
Q 019054 82 GGESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (347)
Q Consensus 82 ~~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~~~~~ 160 (347)
+++|+||..|+||+ +.++|.++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|+.++++..++
T Consensus 73 gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~ 152 (203)
T 2k7n_A 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR 152 (203)
T ss_dssp CCCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTE
T ss_pred CCCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCC
Confidence 99999999999998 48999999999999999999999999999999999999999999999999999999999988889
Q ss_pred cccceEeccceecCCCCCC
Q 019054 161 PIADVTITDCGEIPEGADD 179 (347)
Q Consensus 161 P~~~v~I~~~g~~~~~~~~ 179 (347)
|..+|+|.+|.++......
T Consensus 153 P~~~V~I~~~~v~~~~~s~ 171 (203)
T 2k7n_A 153 PVDDVKIIKAYPSGGGGSG 171 (203)
T ss_dssp ECCCCBEEEEEECCCCCCC
T ss_pred cCCCeEEEEEEEEecCCCC
Confidence 9999999999999765544
No 28
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=1.8e-47 Score=314.67 Aligned_cols=147 Identities=52% Similarity=0.762 Sum_probs=138.9
Q ss_pred CeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCcccCCCCCC
Q 019054 14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED 93 (347)
Q Consensus 14 ~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~ 93 (347)
.++.|+|+||||++.||+||+||++||+.+ ||+||.||||+|+|||||||+. ++|+|++|+||..|+|
T Consensus 27 ~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~d 94 (176)
T 2a2n_A 27 HTSMGDIHTKLFPVECPKTVENFCVHSRNG-----------YYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFED 94 (176)
T ss_dssp EETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCC
T ss_pred EecCccEEEEEeCCCChHHHHHHHHHhhcC-----------ccCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCcccc
Confidence 345899999999999999999999999987 8999999999999999999986 6799999999999999
Q ss_pred Ccc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHHHhcccCC-CCCccccceEeccce
Q 019054 94 ENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTG-DNDCPIADVTITDCG 171 (347)
Q Consensus 94 e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~I~~~~~~-~~~~P~~~v~I~~~g 171 (347)
|++ .++|.++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||+++++|+.++++ .+++|..+|.|.++.
T Consensus 95 E~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~ 174 (176)
T 2a2n_A 95 EFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINIT 174 (176)
T ss_dssp CCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEE
T ss_pred ccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEE
Confidence 998 699999999999999999999999999999999999999999999999999999999998 568999999998875
Q ss_pred e
Q 019054 172 E 172 (347)
Q Consensus 172 ~ 172 (347)
+
T Consensus 175 v 175 (176)
T 2a2n_A 175 V 175 (176)
T ss_dssp E
T ss_pred E
Confidence 4
No 29
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=3.6e-47 Score=320.22 Aligned_cols=161 Identities=34% Similarity=0.564 Sum_probs=142.6
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEec-----cCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGG-----DISA 77 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G-----~~~~ 77 (347)
+..|.|+++ .|+|+||||++.||+||+||++||+.+ ||+||.||||+|+|||||| |++
T Consensus 6 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~Dp~- 68 (201)
T 3bo7_A 6 KGYLRIVTT-----QGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAELRQPS- 68 (201)
T ss_dssp CEEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEECCGGGCCC--
T ss_pred ceEEEEEeC-----CCCEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCCEEEEeeCCCEEEcCcccccCCC-
Confidence 456667666 799999999999999999999999987 8999999999999999999 987
Q ss_pred CCCCCCCccc-------CCCCCCC-ccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHHHH
Q 019054 78 GDGTGGESIY-------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRS 149 (347)
Q Consensus 78 ~~~~~~~~~~-------~~~~~~e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl~~ 149 (347)
++|+|++|+| |.+|+|| ++.++|+++|+|||||.||||+||||||++.+.|+||++|+|||+|++||++|++
T Consensus 69 ~~g~gg~si~~~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~ 148 (201)
T 3bo7_A 69 KKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQ 148 (201)
T ss_dssp ------CCSSCCCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHH
T ss_pred CCCCCCccccccccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHH
Confidence 7899999999 8999999 5789999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCccccceEeccceecCCCCCCC
Q 019054 150 IEHVMTGDNDCPIADVTITDCGEIPEGADDG 180 (347)
Q Consensus 150 I~~~~~~~~~~P~~~v~I~~~g~~~~~~~~~ 180 (347)
|+.++++..++|..+|.|.+|+++.+++++.
T Consensus 149 I~~~~t~~~~~P~~~i~I~~~~v~~dPf~d~ 179 (201)
T 3bo7_A 149 WEKLETDKKDKPLKPPKVEEIIVFKNPFEDA 179 (201)
T ss_dssp HTTCCBCTTSCBSSCCBEEEEEEEECCC---
T ss_pred HHhCCcCCCCCcCCCeEEEEEEEEcCCccCH
Confidence 9999999889999999999999997776653
No 30
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=7.8e-47 Score=314.17 Aligned_cols=164 Identities=44% Similarity=0.713 Sum_probs=145.8
Q ss_pred CCCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCC-CCC---CcccccCCeeEEEecCceEEeccCC
Q 019054 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP-NTG---VPLHYKGVRFHRVIKGFMIQGGDIS 76 (347)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~-~~~---~~~~y~g~~~~rv~~~~~iq~G~~~ 76 (347)
|+++.|.|+++ .|+|+||||++.||+||+||++||+|.++... .+| +..||+|+.||||+|+|||||||+.
T Consensus 21 ~~~~~v~l~t~-----~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~ 95 (191)
T 1w74_A 21 LATATATLHTN-----RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT 95 (191)
T ss_dssp CCSEEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT
T ss_pred CCCeEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC
Confidence 34667777776 79999999999999999999999998766421 112 2369999999999999999999985
Q ss_pred CCCCCCCCcccCCCCCCC-ccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEe--ChHHHHHHhcc
Q 019054 77 AGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHV 153 (347)
Q Consensus 77 ~~~~~~~~~~~~~~~~~e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~--g~~vl~~I~~~ 153 (347)
++|+|+ ||.+|+|| ++.++|+++|+|||||.|||||+|||||++.+.|+||++|+|||+|++ ||++|++|+++
T Consensus 96 -g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~ 171 (191)
T 1w74_A 96 -GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKT 171 (191)
T ss_dssp -SSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTS
T ss_pred -CCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcC
Confidence 677776 58899999 578999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCCCCCccccceEeccceec
Q 019054 154 MTGDNDCPIADVTITDCGEI 173 (347)
Q Consensus 154 ~~~~~~~P~~~v~I~~~g~~ 173 (347)
+++.+++|..+|.|.+|++.
T Consensus 172 ~t~~~~~P~~~v~I~~~~i~ 191 (191)
T 1w74_A 172 ATDGNDRPTDPVVIESITIS 191 (191)
T ss_dssp CBCTTSCBSSCCEEEEEEEC
T ss_pred CcCCCCCcCCCeEEEEEEEC
Confidence 99888999999999999763
No 31
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=312.26 Aligned_cols=158 Identities=40% Similarity=0.727 Sum_probs=147.6
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
++.|+|+|+ .|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+|
T Consensus 24 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~g 86 (185)
T 2hq6_A 24 NGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCLEA-----------YYDNTIFHRVVPGFIVQGGDPT-GTGSG 86 (185)
T ss_dssp BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred CCEEEEEeC-----CccEEEEEeCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence 678999997 799999999999999999999999987 8999999999999999999986 78999
Q ss_pred CCcccCCCCCCCcc-ccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCCCCceeeEEEeChHHH--HHHhcccCCCCC
Q 019054 83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVV--RSIEHVMTGDND 159 (347)
Q Consensus 83 ~~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~vl--~~I~~~~~~~~~ 159 (347)
++++||.+|+||+. .++|+++|+|||||.+||+++|||||++++.|+||++|+|||+|+ |++++ .+|+.++++.++
T Consensus 87 g~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~ 165 (185)
T 2hq6_A 87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDE 165 (185)
T ss_dssp CCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTS
T ss_pred CCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCC
Confidence 99999999999986 688999999999999999999999999999999999999999999 88774 678899888889
Q ss_pred ccccceEeccceecCCCCC
Q 019054 160 CPIADVTITDCGEIPEGAD 178 (347)
Q Consensus 160 ~P~~~v~I~~~g~~~~~~~ 178 (347)
+|..+|+|.+|+++..+++
T Consensus 166 ~P~~~v~I~~~~v~~~Pf~ 184 (185)
T 2hq6_A 166 RPHNPHKIKSCEVLFNPFD 184 (185)
T ss_dssp CBSSCCEEEEEEEEECTTC
T ss_pred CCCCCeEEEEEEEeCCCCC
Confidence 9999999999999976654
No 32
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=2.6e-45 Score=300.52 Aligned_cols=153 Identities=31% Similarity=0.502 Sum_probs=138.3
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (347)
.||.|+|+++ .|+|+||||++.||+||+||++||+.+ ||+||.||||+|+|||||||++...
T Consensus 3 ~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~-- 64 (166)
T 1v9t_A 3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQM-- 64 (166)
T ss_dssp CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEESSBCTTC--
T ss_pred CCeEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCcEEEcCCcCcCC--
Confidence 4899999987 799999999999999999999999886 8999999999999999999987433
Q ss_pred CCCcccCCCCCCCccccCCCCccEEEeeeC-CCCCCCceEEEecCCCCCCCCC-----CceeeEEEeChHHHHHHhcccC
Q 019054 82 GGESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK-----HVVFGRVIKGMGVVRSIEHVMT 155 (347)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~-~~~~~~sqF~i~~~~~~~l~~~-----~~vfG~v~~g~~vl~~I~~~~~ 155 (347)
+.+.+|.+|+||+....|+++|+|||||. +|||++|||||++.+.|+||++ |+|||+|++||++|++|+++++
T Consensus 65 -~~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~ 143 (166)
T 1v9t_A 65 -QQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 143 (166)
T ss_dssp -CBCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred -CCCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCC
Confidence 23346888999998766778999999997 5999999999999999999998 9999999999999999999998
Q ss_pred CC----CCccccceEeccceec
Q 019054 156 GD----NDCPIADVTITDCGEI 173 (347)
Q Consensus 156 ~~----~~~P~~~v~I~~~g~~ 173 (347)
+. .+.|..+|.|.+|.++
T Consensus 144 ~~~~~~~~~P~~~v~I~~~~v~ 165 (166)
T 1v9t_A 144 HDVGPYQNVPSKPVVILSATVL 165 (166)
T ss_dssp EEETTEEEEESSCCBEEEEEEC
T ss_pred CCCCccCCCcCCCeEEEEEEEe
Confidence 75 3689999999999875
No 33
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=3.9e-45 Score=312.75 Aligned_cols=160 Identities=34% Similarity=0.577 Sum_probs=147.6
Q ss_pred CCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCC
Q 019054 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (347)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (347)
++.|+|+|+ .|+|+||||++.||+||+||++||+.+ ||+||.||||+|+|||||||++ ++|+|
T Consensus 21 ~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydgt~FhRVi~~FmiQgGdp~-~~G~G 83 (232)
T 3bkp_A 21 RGKVVLHTS-----LGDLDVELWARECPLACRNFVQLCLEG-----------YYVNTIFHRVVKDFIVQGGDPT-GTGRG 83 (232)
T ss_dssp BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHHT-----------TTTTCBEEEEETTTEEEECCTT-SSSSC
T ss_pred CCEEEEEEC-----CCcEEEEEcCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEeCCCEEEcCCCC-CCCCC
Confidence 568999987 799999999999999999999999987 8999999999999999999997 78999
Q ss_pred CCccc--CCCCCCCcc-ccCCCCccEEEeeeCCC--------------CCCCceEEEecCCCCCCCCCCceeeEEEeChH
Q 019054 83 GESIY--GLKFEDENF-ELKHERKGMLSMANAGP--------------NTNGSQFFITTTRTSHLDGKHVVFGRVIKGMG 145 (347)
Q Consensus 83 ~~~~~--~~~~~~e~~-~~~~~~~g~~~~~~~~~--------------~~~~sqF~i~~~~~~~l~~~~~vfG~v~~g~~ 145 (347)
++++| |.+|+||+. .++|+++|+||||+.++ ++++|||||++.+.|+||++|+|||+|+ |++
T Consensus 84 g~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~ 162 (232)
T 3bkp_A 84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHT 162 (232)
T ss_dssp CCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGG
T ss_pred CCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCc
Confidence 99999 999999986 78899999999999996 6999999999999999999999999999 776
Q ss_pred H--HHHHhcccCCCCCccccceEeccceecCCCCCCC
Q 019054 146 V--VRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180 (347)
Q Consensus 146 v--l~~I~~~~~~~~~~P~~~v~I~~~g~~~~~~~~~ 180 (347)
+ +++|+.++++.+++|..+|.|.+|+++..++++.
T Consensus 163 v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dPf~d~ 199 (232)
T 3bkp_A 163 LYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFEDL 199 (232)
T ss_dssp HHHHHHHTTSCBCGGGCBSSCCBEEEEEEEECCCTTC
T ss_pred hHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCChhhh
Confidence 6 7899999998889999999999999998777654
No 34
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=3.1e-44 Score=294.96 Aligned_cols=153 Identities=33% Similarity=0.502 Sum_probs=137.1
Q ss_pred CCCeEEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCC
Q 019054 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (347)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (347)
.+|.|.|+++ .|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++...
T Consensus 2 p~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~-- 63 (167)
T 3s6m_A 2 PGSMVELHTN-----HGVIKLELDEAKAPKTVENFLNYVKKG-----------HYDGTIFHRVINGFMIQGGGFEPGL-- 63 (167)
T ss_dssp CCCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEESSEETTT--
T ss_pred CCcEEEEEeC-----CceEEEEEeCCCCcHHHHHHHHHhhhc-----------ccCCCEeEEecCCcEEEeccccCCC--
Confidence 4788999887 799999999999999999999999987 8999999999999999999987433
Q ss_pred CCCcccCCCCCCCccccCCCCccEEEeee-CCCCCCCceEEEecCCCCCCCCC--------CceeeEEEeChHHHHHHhc
Q 019054 82 GGESIYGLKFEDENFELKHERKGMLSMAN-AGPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEH 152 (347)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~-~~~~~~~sqF~i~~~~~~~l~~~--------~~vfG~v~~g~~vl~~I~~ 152 (347)
+.+.++.+|++|.....++++|+||||| .+|||++|||||++.+.++||++ |+|||+|++||+++++|++
T Consensus 64 -~~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~ 142 (167)
T 3s6m_A 64 -KQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKA 142 (167)
T ss_dssp -EECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTT
T ss_pred -CCCCCCCccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHc
Confidence 2345688899997654556899999999 57999999999999999999998 9999999999999999999
Q ss_pred ccCCC----CCccccceEeccceec
Q 019054 153 VMTGD----NDCPIADVTITDCGEI 173 (347)
Q Consensus 153 ~~~~~----~~~P~~~v~I~~~g~~ 173 (347)
++++. +++|..+|.|.++.++
T Consensus 143 ~~t~~~~~~~~~P~~~v~I~~~~il 167 (167)
T 3s6m_A 143 VKTGSKGFHQDVPNDDVVIEKAVVV 167 (167)
T ss_dssp SCBBC---CBTCBSSCCEEEEEEEC
T ss_pred CCcCCCcccCCCcCCCeEEEEEEEC
Confidence 99987 5899999999988764
No 35
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=2.4e-44 Score=294.16 Aligned_cols=149 Identities=32% Similarity=0.546 Sum_probs=133.3
Q ss_pred EEEEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCc
Q 019054 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES 85 (347)
Q Consensus 6 v~~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (347)
|.|+++ .|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++.+. +.+
T Consensus 2 v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~ 62 (164)
T 1lop_A 2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGM---KQK 62 (164)
T ss_dssp EEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEESSEETTT---EEC
T ss_pred EEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCceEecCCcccCC---CcC
Confidence 455555 799999999999999999999999987 8999999999999999999997433 456
Q ss_pred ccCCCCCCCccccCCCCccEEEeeeC-CCCCCCceEEEecCCCCCCCCC--------CceeeEEEeChHHHHHHhcccCC
Q 019054 86 IYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEHVMTG 156 (347)
Q Consensus 86 ~~~~~~~~e~~~~~~~~~g~~~~~~~-~~~~~~sqF~i~~~~~~~l~~~--------~~vfG~v~~g~~vl~~I~~~~~~ 156 (347)
++|.+|+||+....++++|+||||+. +|||++|||||++.+.|+||++ |+|||+|++||++|++|++++++
T Consensus 63 ~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~ 142 (164)
T 1lop_A 63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATG 142 (164)
T ss_dssp CCCCCBCCCCCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEE
T ss_pred CCCCccccccccccccCccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcC
Confidence 78999999987544447999999975 6999999999999999999998 99999999999999999999987
Q ss_pred C----CCccccceEeccceec
Q 019054 157 D----NDCPIADVTITDCGEI 173 (347)
Q Consensus 157 ~----~~~P~~~v~I~~~g~~ 173 (347)
. .++|..+|.|.+|.++
T Consensus 143 ~~~~~~~~P~~~v~I~~~~v~ 163 (164)
T 1lop_A 143 RSGMHQDVPKEDVIIESVTVS 163 (164)
T ss_dssp EETTEEEEESSCCEEEEEEEC
T ss_pred CccccCCCcCCCeEEEEEEEe
Confidence 5 4789999999999875
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=3e-39 Score=291.57 Aligned_cols=137 Identities=25% Similarity=0.402 Sum_probs=123.4
Q ss_pred CCeEEEEEEECC---eeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCC
Q 019054 3 RPRCFLDISIGV---ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGD 79 (347)
Q Consensus 3 ~~~v~~~~~~~~---~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~ 79 (347)
++.|.|+|++++ ++.|+|+|+||++.||+||+||++||+.+ ||+|+.|||| |||||||||++ ++
T Consensus 170 ra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~G-----------fYdGt~FHRV-~gFmIQgGDp~-g~ 236 (369)
T 3rfy_A 170 RASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERH-----------FYDGMEIQRS-DGFVVQTGDPE-GP 236 (369)
T ss_dssp EEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTT-----------TTTTEECEEE-EEEEECCCCCC-CC
T ss_pred CeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCeeeee-CCeeEecCCCC-CC
Confidence 567888888664 36899999999999999999999999987 9999999999 99999999997 56
Q ss_pred CCC---------------------CCcccCCCCCCCcc-----ccCCCCccEEEeeeC--CCCCCCceEEEec-------
Q 019054 80 GTG---------------------GESIYGLKFEDENF-----ELKHERKGMLSMANA--GPNTNGSQFFITT------- 124 (347)
Q Consensus 80 ~~~---------------------~~~~~~~~~~~e~~-----~~~~~~~g~~~~~~~--~~~~~~sqF~i~~------- 124 (347)
|+| +.++|+..|++|++ .++|+++|+|||||. +|||+||||||++
T Consensus 237 G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~ 316 (369)
T 3rfy_A 237 AEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTP 316 (369)
T ss_dssp CSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECS
T ss_pred CCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCC
Confidence 655 46789999999865 789999999999998 7999999999999
Q ss_pred CCCCCCCCCCceeeEEEeChHHHHHHhc
Q 019054 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (347)
Q Consensus 125 ~~~~~l~~~~~vfG~v~~g~~vl~~I~~ 152 (347)
.+.++||++|+|||+|++||++|++|++
T Consensus 317 ~~~~~LDgkytVFG~VveGmdVVdkI~~ 344 (369)
T 3rfy_A 317 SNSNILDGRYAVFGYVTDNEDFLADLKV 344 (369)
T ss_dssp CCCSSSCSCEEEEEEEEESTTGGGGCCT
T ss_pred CCCcccCCCeeEEEEEecCHHHHHHHhC
Confidence 4689999999999999999999999987
No 37
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=1.1e-21 Score=154.24 Aligned_cols=116 Identities=25% Similarity=0.426 Sum_probs=111.9
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
++.+..+++.|+.+++.|+|++|+..|+++|+ .+|....+|.++|.||.++|++++|+.+|+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 71 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK------------------RDPENAILYSNRAACLTKLMEFQRALDDCD 71 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHhhHHHhhccHHHHHHHHH
Confidence 45788999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+||+++|+++++|+++|.+|..+|++++|+.+|+++++++|++.+++..|+.+.
T Consensus 72 ~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 72 TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998764
No 38
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.85 E-value=7.4e-21 Score=155.56 Aligned_cols=140 Identities=28% Similarity=0.427 Sum_probs=125.5
Q ss_pred HHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHH
Q 019054 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (347)
Q Consensus 207 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~ 286 (347)
+.++.+..++..|+.+++.|+|++|+..|.+++++++.......+.++++....|....++.|+|.||+++|+|++|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44567899999999999999999999999999998776655555555555667899999999999999999999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhc
Q 019054 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKKKVS 346 (347)
Q Consensus 287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~ 346 (347)
|++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|+++ .+...|..++++++
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 78889988887654
No 39
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.83 E-value=9.5e-21 Score=152.93 Aligned_cols=132 Identities=12% Similarity=0.064 Sum_probs=116.3
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
...+..+++.|+.+++.|+|++|+..|++||++.+..... +.....|....+|.|+|.|+.++|+|++|+.+|+
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5578899999999999999999999999999965542110 1222455667799999999999999999999999
Q ss_pred HHhhc-------CCCChhHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 289 FAMRD-------GDDNVKAL----FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 289 ~al~~-------~p~~~~a~----~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+||++ +|+++++| +++|.++..+|++++|+.+|+++++++|++..+...+..+++.++
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999 99999999 999999999999999999999999999999999998888887764
No 40
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.79 E-value=3.9e-19 Score=139.69 Aligned_cols=116 Identities=26% Similarity=0.353 Sum_probs=106.6
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
..+.|.+++++|+.+++.|+|++|+.+|++||+ ++|....+|.|+|.||.++|+|++|+.+|
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~------------------~~p~~~~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE------------------LDPSNITFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 345788999999999999999999999999999 88999999999999999999999999999
Q ss_pred HHHhhcCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 288 EFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 288 ~~al~~~p~~-------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+++|+++|++ +++|+++|.++..+|++++|++.|+++++++| +++....|..++
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~~le 126 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVKELE 126 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHHHHHH
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHHHHhC
Confidence 9999998876 46899999999999999999999999999988 577777777665
No 41
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.7e-18 Score=135.14 Aligned_cols=117 Identities=20% Similarity=0.315 Sum_probs=113.0
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..++..|..+++.|+|++|+..|+++++ ..|....++.++|.|+.++|++++|+.+++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 577899999999999999999999999999 88888999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHh
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE------PNDGGIKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~------P~~~~~~~~l~~~~~~~ 345 (347)
++++|+++.+++.+|.++..+|++++|+..|+++++++ |.+..+...+..+++++
T Consensus 65 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999 99999999999998775
No 42
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.75 E-value=8.1e-18 Score=136.27 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=105.7
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
.++.+..+..+|..+++.|+|++|+..|++++. .+|.++.+|.++|.|+..+|+|++|+..|
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~------------------~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI------------------YDFYNVDYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence 345678899999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
++|++++|+++.+|+++|.+|..+|++++|+..|++++++.|+++ +.......
T Consensus 94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~-~~~~A~~l 146 (151)
T 3gyz_A 94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK-LKIKAQSY 146 (151)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-HHHHHHHH
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 999999999999999999999999999999999999999999765 44443333
No 43
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.72 E-value=2.3e-17 Score=134.94 Aligned_cols=117 Identities=28% Similarity=0.392 Sum_probs=109.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|+++++ ..|....+++++|.||.++|+|++|+.+++++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS------------------IAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 678899999999999999999999999999 88889999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHh
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG--IKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~l~~~~~~~ 345 (347)
++++|+++.+|+++|.+|..+|++++|+..|+++++++|++.. +...+..+++++
T Consensus 72 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 128 (164)
T 3sz7_A 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128 (164)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887 666666666654
No 44
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.72 E-value=1.3e-17 Score=134.76 Aligned_cols=120 Identities=10% Similarity=0.011 Sum_probs=109.1
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
.+.+..++.+|..+++.|+|++|+..|+++++ .+|..+.+|.++|.+|.++|++++|+.+++
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN------------------VQERDPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 34556678899999999999999999999999 899999999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVES-FEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~-~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++++++|+++.+++++|.+|..+|++++|... +++|++++|+++.+...+..+....+
T Consensus 90 ~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 90 RSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999887766 58999999999999988888766544
No 45
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.72 E-value=5.9e-17 Score=136.70 Aligned_cols=151 Identities=25% Similarity=0.245 Sum_probs=122.2
Q ss_pred CCCCCCCCcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHH
Q 019054 194 WPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC 273 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~ 273 (347)
++...+.+..+.....+.+..++..|+.++..|+|++|+..|.+++++.+...... ..............++.++|.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~ 97 (198)
T 2fbn_A 20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNLNLATC 97 (198)
T ss_dssp --CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc--hhhHHHHHHHHHHHHHHHHHHH
Confidence 33344445566777788899999999999999999999999999998543211000 0001111223345899999999
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+.++|+|++|+.+|+++++++|++.++++++|.+|..+|++++|+..|+++++++|.+..++..+..+...++
T Consensus 98 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887653
No 46
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=6.9e-17 Score=130.28 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=109.0
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
..+.+..+..+|..++..|+|++|+..|++++. .+|....+|+++|.++..+|++++|+..|
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------------------LDHYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------cCcccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345677889999999999999999999999999 88999999999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++........+...
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 135 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM 135 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887765555555443
No 47
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.71 E-value=1.3e-16 Score=128.88 Aligned_cols=112 Identities=16% Similarity=0.076 Sum_probs=103.0
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~ 296 (347)
.+|..+..+|++++|+..|++++. ..|....+++++|.+|+++|+|++|+.+++++++++|+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~------------------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~ 63 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP------------------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER 63 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC------------------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 378899999999999999999999 88999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 297 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++.+|+.+|.+|..+|++++|+..|+++++++|++..++..++.+....+
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998876554
No 48
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.71 E-value=4.6e-17 Score=155.57 Aligned_cols=143 Identities=24% Similarity=0.376 Sum_probs=121.6
Q ss_pred CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (347)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (347)
+.......++.+..++.+|+.+++.|+|++|+..|++|+++.+... ....+......+....+|+|+|.||+++++|
T Consensus 257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~---~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 333 (457)
T 1kt0_A 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY---GLSEKESKASESFLLAAFLNLAMCYLKLREY 333 (457)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC---SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc---cCChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3455666778899999999999999999999999999999654321 1233444556777789999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++|+.+|++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..+..+...++
T Consensus 334 ~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877653
No 49
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.70 E-value=9e-17 Score=147.38 Aligned_cols=143 Identities=26% Similarity=0.371 Sum_probs=124.9
Q ss_pred CcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh
Q 019054 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (347)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (347)
+...+...++.+..++.+|+.+++.|+|++|+..|++|+++.+.... .+.+......+....+++|+|.||+++|+|
T Consensus 136 ~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 212 (336)
T 1p5q_A 136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS---FSNEEAQKAQALRLASHLNLAMCHLKLQAF 212 (336)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC---CCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc---CChHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 34456667778999999999999999999999999999996543211 223444557777789999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++|+.+|++|++++|+++++++++|.+|..+|++++|+.+|+++++++|++..++..++.+...++
T Consensus 213 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988876653
No 50
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.70 E-value=9.9e-17 Score=128.06 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=109.0
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
.+.+..+..+|..+++.|+|++|+..|++++. .+|....+|.++|.++..+|++++|+..++
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 76 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCM------------------LDHYDARYFLGLGACRQSLGLYEQALQSYS 76 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34567788999999999999999999999999 889999999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+++.++|+++.+++.+|.+|..+|++++|+..|+++++++|.++........+...+
T Consensus 77 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887666655555443
No 51
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.68 E-value=1.2e-16 Score=146.79 Aligned_cols=146 Identities=25% Similarity=0.363 Sum_probs=103.8
Q ss_pred CCCCcchhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc
Q 019054 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (347)
Q Consensus 198 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (347)
...+.......++.+..++..|+.+++.|+|++|+..|++|+++.+....... ..............+|+|+|.||+++
T Consensus 165 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~l~~~~~~nla~~~~~~ 243 (338)
T 2if4_A 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQL-YGKYQDMALAVKNPCHLNIAACLIKL 243 (338)
T ss_dssp BTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTC-CHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhh-cccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677788889999999999999999999999999999995432110000 00000111222335899999999999
Q ss_pred CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
++|++|+.+|++||+++|++.++|+++|.+|..+|+|++|+.+|+++++++|++..++..|..+...
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998887543
No 52
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.65 E-value=6e-16 Score=121.83 Aligned_cols=117 Identities=27% Similarity=0.384 Sum_probs=110.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|.++++ ..|....++.++|.|+..+|++++|+.+++++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh------------------hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 467889999999999999999999999999 78888999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHh
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-----DGGIKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-----~~~~~~~l~~~~~~~ 345 (347)
++++|+++.+++.+|.++..+|++++|+..|+++++++|+ +..+...+..++.+.
T Consensus 70 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 888888888887654
No 53
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.65 E-value=1.3e-15 Score=115.83 Aligned_cols=116 Identities=27% Similarity=0.306 Sum_probs=110.0
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
+.+..+...|..++..|+|++|+..|++++. ..|....++.++|.++..+|++++|+..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIK------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3567889999999999999999999999999 7777889999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
++.++|++..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+.+
T Consensus 64 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999988765
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=6.6e-16 Score=154.92 Aligned_cols=87 Identities=21% Similarity=0.187 Sum_probs=50.4
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
++|....+|+|+|.++.++|++++|+..|++|++++|+++.+|+++|.+|..+|++++|++.|++|++++|++..++..|
T Consensus 72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L 151 (723)
T 4gyw_A 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 019054 339 AVAKKKV 345 (347)
Q Consensus 339 ~~~~~~~ 345 (347)
+.+...+
T Consensus 152 ~~~l~~~ 158 (723)
T 4gyw_A 152 AHCLQIV 158 (723)
T ss_dssp HHHHHHT
T ss_pred hhHHHhc
Confidence 5555443
No 55
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.64 E-value=2.2e-15 Score=128.36 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=107.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHH----------------HHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN----------------SSACK 274 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n----------------la~~~ 274 (347)
.+..+...|..++..|+|++|+..|+++++ .+|....++++ +|.+|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA------------------LNIDRTEMYYWTNVDKNSEISSKLATELALAY 64 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence 356778899999999999999999999999 88888888888 99999
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
.++|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888764
No 56
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.63 E-value=5.1e-15 Score=114.44 Aligned_cols=122 Identities=32% Similarity=0.409 Sum_probs=114.3
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
....+..+..+|..++..|+|++|+..|++++. ..|....++.++|.++..+|++++|+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 69 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE------------------LNPANAVYFCNRAAAYSKLGNYAGAVQDC 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhhchHHHHHHH
Confidence 345678899999999999999999999999999 67777889999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347 (347)
Q Consensus 288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (347)
++++.++|++..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+...+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998877653
No 57
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=117.47 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=111.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+.++..+|..++..|+|++|+..|+++++ ..|....++.++|.++..++++++|+..++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK------------------RNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 577889999999999999999999999999 67777899999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++++|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+....+
T Consensus 77 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 77 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998887664
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.62 E-value=2e-15 Score=151.37 Aligned_cols=121 Identities=22% Similarity=0.308 Sum_probs=116.0
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
++.+.++.++|+.+.+.|+|++|+..|++||+ ++|....+++|+|.+|.++|++++|+.+|+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~------------------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~ 67 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALE------------------VFPEFAAAHSNLASVLQQQGKLQEALMHYK 67 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45788999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVSR 347 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (347)
+|++++|+++.+|+++|.+|..+|++++|++.|++|++++|++..++.+|+.+...+++
T Consensus 68 ~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999877653
No 59
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=118.40 Aligned_cols=116 Identities=33% Similarity=0.478 Sum_probs=107.8
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH---HHHHHHHHHHHHHcCChHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
.+..+...|..++..|+|++|+..|+++++ ..|.. ..++.++|.++..++++++|+.++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 88 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG------------------LDATPQDQAVLHRNRAACHLKLEDYDKAETEA 88 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------HcccchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 567789999999999999999999999998 44443 889999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+++++++|++..+++.+|.++..+|++++|+..|+++++++|++..++..+..+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999888654
No 60
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.61 E-value=2e-15 Score=121.56 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=98.0
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHh
Q 019054 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL----------KGALLDTEFAM 291 (347)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~----------~~A~~~~~~al 291 (347)
.-+.++|++|+..|+++++ ++|..+.+|+|+|.++..++++ ++|+..|++||
T Consensus 12 ~~r~~~feeA~~~~~~Ai~------------------l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL 73 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYK------------------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL 73 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999999999876 59999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 292 RDGDDNVKALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~-----------~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+++|++..+|+++|.+|..+| +|++|+++|++|++++|++...+..+..+.+.
T Consensus 74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence 999999999999999999885 89999999999999999999999999887765
No 61
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.61 E-value=1.2e-15 Score=118.59 Aligned_cols=101 Identities=10% Similarity=0.006 Sum_probs=91.5
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+..+|..+++.|++++|+..|+++++ .+|....+++++|.++..+|++++|+..+++|++++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 81 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 57788899999999999999999999 899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
|++..+++.+|.+|..+|++++|+..|+++++++|.+..
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999999999999999999998754
No 62
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=2.5e-15 Score=128.81 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=61.6
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+..+|..+++.|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+..++++++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALK------------------ENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555 4555555555555555555555555555555555
Q ss_pred cCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 293 DGDDNVKALFRQGQAYMAL-----------NDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~-----------~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
++|+++.+++.+|.++..+ |++++|+..|+++++++|++..++..++.+..
T Consensus 68 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5555555555555555555 55555555555555555555555555544443
No 63
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.59 E-value=1.9e-14 Score=116.53 Aligned_cols=117 Identities=24% Similarity=0.362 Sum_probs=109.4
Q ss_pred HHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHH
Q 019054 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (347)
Q Consensus 207 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~ 286 (347)
...+.+..+..+|..++..|+|++|+..|.++++ ..|....++.++|.++..+|++++|+..
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456788999999999999999999999999999 7788889999999999999999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 287 ~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
++++++++|.++.+++.+|.++..+|++++|+..|+++++++|.+..+...+..+
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888666555
No 64
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.59 E-value=8.6e-15 Score=113.84 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=102.1
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHH---HHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS---QIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+...|..++..|+|++|+..|+++++ ..|... .+++++|.++.++|++++|+..++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 65 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLE------------------LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH------------------HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 357788899999999999999999998 444444 79999999999999999999999999
Q ss_pred hhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 291 MRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 291 l~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+..+|++ +.+++.+|.++..+|++++|+..|+++++..|+++.+...+..+...
T Consensus 66 ~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 66 VSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999 88999999999999999999999999999999999888777666544
No 65
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.59 E-value=8.3e-15 Score=113.39 Aligned_cols=117 Identities=29% Similarity=0.370 Sum_probs=108.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|.+++. ..|....++.++|.++..+|++++|+.+++++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKE------------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 567789999999999999999999999999 67778899999999999999999999999999
Q ss_pred hhcCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 291 MRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~-------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+.+.|.+ ..+++.+|.++..+|++++|+..|++++++.| ++.+...+..+.+.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 9998877 89999999999999999999999999999999 7888888888877654
No 66
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=6.9e-15 Score=137.09 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=46.0
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
++|....+|+++|.++..+|++++|+.+|++||+++|++..+|+++|.++..+|++++|+.+|+++++++|.+..++..+
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l 240 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHH
Q 019054 339 AVAKKK 344 (347)
Q Consensus 339 ~~~~~~ 344 (347)
+.+...
T Consensus 241 g~~l~~ 246 (382)
T 2h6f_A 241 YFVISN 246 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 67
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.58 E-value=9.9e-15 Score=112.30 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=90.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhH---HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhH
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL---RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a 300 (347)
..|+|++|+..|+++++ . +|....++.++|.+|..+|+|++|+..++++++++|+++.+
T Consensus 2 ~~g~~~~A~~~~~~al~------------------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 63 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA------------------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63 (117)
T ss_dssp -----CCCHHHHHHHHS------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHH------------------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence 36899999999999999 6 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
++.+|.++..+|++++|+..|++++++.|+++.+......+.
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999998876655443
No 68
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=1.9e-14 Score=123.34 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=110.7
Q ss_pred HHhhHHHHHHcCccccch-----------hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKK-----------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK 276 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~-----------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 276 (347)
.++.+..+..+|..+... |++++|+..|+++++ .+|....++.++|.++..
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER------------------VNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHH
Confidence 344567788999999999 999999999999999 899999999999999999
Q ss_pred cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 277 l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+|++++|+..++++++++ +++.+++.+|.+|..+|++++|+..|+++++++|++..+...++.+...+
T Consensus 131 ~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLK 198 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred cCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 999999999999999999 99999999999999999999999999999999999999999998876544
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=3.8e-14 Score=121.71 Aligned_cols=105 Identities=20% Similarity=0.338 Sum_probs=99.2
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHh-hHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
+..+...|..++..|+|++|+..|+++++ ..| ....+++++|.|+..+|++++|+.+++++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 68 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLK------------------LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIA 68 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 46789999999999999999999999999 665 66688999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
++++|++..+++.+|.+|..+|++++|+..|+++++++|+++..
T Consensus 69 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 112 (228)
T 4i17_A 69 IKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI 112 (228)
T ss_dssp HHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 99999999999999999999999999999999999999999954
No 70
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.55 E-value=7.6e-14 Score=106.82 Aligned_cols=117 Identities=32% Similarity=0.485 Sum_probs=109.3
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|++++|+..|+++++ ..|....++.++|.++...|++++|+..++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356788899999999999999999999998 66677789999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+....
T Consensus 70 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998887654
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=5.1e-14 Score=116.64 Aligned_cols=136 Identities=17% Similarity=0.229 Sum_probs=89.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-----------ccCCCCh-----hhhhhHHhhHHHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGIDE-----GKSSSLRKTKSQIFTNSSACK 274 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~nla~~~ 274 (347)
.+..+.++|+.++++|+|++|+..|+++++.-+... .....+. .......+....++.++|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 466788999999999999999999999998322100 0000000 000112233334444444555
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
...++++.|+..+.+++.++|.+..+++.+|.+|..+|++++|+..|+++++++|.+..++..++.+...++
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 555555555555555556677777788888888888888888888888888888888888888888776654
No 72
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=9.3e-15 Score=136.18 Aligned_cols=124 Identities=10% Similarity=0.064 Sum_probs=111.2
Q ss_pred hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC-hHHH
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGA 283 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A 283 (347)
+....+.+..+..+|..+.+.|+|++|+..|+++|+ ++|....+|+++|.++..+|+ +++|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~------------------l~P~~~~a~~~~g~~l~~~g~d~~eA 151 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------LNAANYTVWHFRRVLLKSLQKDLHEE 151 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------hCccCHHHHHHHHHHHHHcccCHHHH
Confidence 334455677888899999999999999999999999 889999999999999999997 9999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 284 LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 284 ~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+.++++||+++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.+...++
T Consensus 152 l~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g 214 (382)
T 2h6f_A 152 MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK 214 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999988877664
No 73
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.54 E-value=2.3e-14 Score=137.50 Aligned_cols=115 Identities=24% Similarity=0.384 Sum_probs=109.3
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
+.+..+..+|+.+++.|+|++|+..|++|++ ..|....++.++|.+|.++|+|++|+.++++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 65 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATR 65 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3566788999999999999999999999999 8888899999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
|++++|+++.+++++|.+|..+|++++|++.|+++++++|++..++..++.+.
T Consensus 66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 118 (477)
T 1wao_1 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118 (477)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888774
No 74
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.53 E-value=2.6e-14 Score=127.59 Aligned_cols=103 Identities=25% Similarity=0.373 Sum_probs=99.1
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..++.+|+.+++.|+|++|+..|+++++ ..|....++.++|.+|.++|++++|+.++++|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 64 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 467789999999999999999999999999 88888999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 331 (347)
++++|+++++++++|.+|..+|++++|+..|+++++++|++
T Consensus 65 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999976
No 75
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.51 E-value=2.5e-14 Score=115.60 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=85.8
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
++|....+++++|.++.++|+|++|+..|++++.++|.++.+|+.+|.+|..+|+|++|+..|+++++++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 019054 339 AVAKKKVSR 347 (347)
Q Consensus 339 ~~~~~~~~~ 347 (347)
+.+...+++
T Consensus 111 g~~~~~lg~ 119 (151)
T 3gyz_A 111 GQCQLRLKA 119 (151)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999877653
No 76
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=1.8e-13 Score=113.23 Aligned_cols=125 Identities=17% Similarity=0.116 Sum_probs=98.1
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-----------ccCCCC-----hhhhhhHHhhHHHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGID-----EGKSSSLRKTKSQIFTNSSA 272 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~nla~ 272 (347)
++.+..+..+|..+++.|++++|+..+.+++...+... .....+ -.......|....++..+|.
T Consensus 36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~ 115 (184)
T 3vtx_A 36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL 115 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34456677777777777888888877777766443110 000000 01122367778899999999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 273 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
++.++|++++|+..++++++++|.++.+++.+|.+|..+|++++|+..|++|++++|+++.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999999999999999999999999999999999999997653
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.50 E-value=9.4e-14 Score=118.11 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=94.0
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
+|..+++.|+|++|+..|+++++ .+|....++.++|.++..+|++++|+..|+++++++|++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ------------------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHh-----------------------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 298 VKALFRQGQAYMA-----------------------------------LNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 298 ~~a~~~~g~~~~~-----------------------------------~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+.+++.+|.+|.. +|+|++|+.+|+++++++|+. .+...|..+.
T Consensus 122 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~ 200 (208)
T 3urz_A 122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKIL 200 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 9888888777643 357899999999999999964 4555555543
No 78
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.50 E-value=7.9e-14 Score=114.92 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=106.5
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHH-HHHcCCh--HHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC-KLKLGDL--KGALL 285 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~~l~~~--~~A~~ 285 (347)
...+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.+ +...|++ ++|+.
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ------------------LRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44577899999999999999999999999999 888889999999999 8899999 99999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 286 ~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
.++++++++|++..+++.+|.+|..+|++++|+..|+++++++|.+......+..+.+
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765555554443
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=5.8e-14 Score=120.54 Aligned_cols=126 Identities=13% Similarity=0.146 Sum_probs=108.2
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
++.+..+..+|..++..|+|++|+..|+++++..+. ..........++.++|.++..+|++++|+..++
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-----------NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----------cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 345677889999999999999999999999982210 001222233779999999999999999999999
Q ss_pred HHhhcCCC--ChhHHHHHHHHHHhcCCH---------------------------HHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 289 FAMRDGDD--NVKALFRQGQAYMALNDV---------------------------DAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 289 ~al~~~p~--~~~a~~~~g~~~~~~~~~---------------------------~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
++++++|+ ++.+++.+|.+|..+|+. ++|+..|+++++++|++..+...+.
T Consensus 142 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 142 HATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 99999999 999999999999999998 9999999999999999999999999
Q ss_pred HHHHHh
Q 019054 340 VAKKKV 345 (347)
Q Consensus 340 ~~~~~~ 345 (347)
.++..+
T Consensus 222 ~i~~~~ 227 (228)
T 4i17_A 222 QVKAMI 227 (228)
T ss_dssp HHHTTC
T ss_pred HHHHhh
Confidence 987654
No 80
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.48 E-value=2.8e-13 Score=105.84 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=84.8
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
++|..+..+.++|.+|++.|+|++|+..|++||+++|.++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
+.+...++
T Consensus 88 g~~~~~~~ 95 (126)
T 4gco_A 88 AACLVAMR 95 (126)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 99887665
No 81
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.46 E-value=5.7e-14 Score=105.58 Aligned_cols=102 Identities=14% Similarity=0.128 Sum_probs=95.2
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQ------------------LDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456788889999999999999999999 7777788999999999999999999999999999
Q ss_pred cCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCH
Q 019054 293 DGDD--NVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 293 ~~p~--~~~a~~~~g~~~~~~-~~~~~A~~~~~~al~l~P~~~ 332 (347)
++|. +..+++.+|.++..+ |++++|++.++++++..|.+.
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999 999999999999999 999999999999999999763
No 82
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.45 E-value=4.1e-13 Score=113.64 Aligned_cols=116 Identities=19% Similarity=0.147 Sum_probs=104.1
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..++..|..++..|+|++|+..|++++. . ...+++++|.+|..+|++++|+.++++
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------------------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~ 62 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD------------------P---HSRICFNIGCMYTILKNMTEAEKAFTR 62 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------------------C---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------------------C---ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3566788999999999999999999999864 1 356899999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhc
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG----------------GIKKELAVAKKKVS 346 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~----------------~~~~~l~~~~~~~~ 346 (347)
++.++|.++.+++.+|.+|..+|++++|+..|++++++.|.+. .++..++.+...++
T Consensus 63 al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 135 (213)
T 1hh8_A 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135 (213)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred HHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999877 78888877765543
No 83
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=4.6e-13 Score=131.06 Aligned_cols=120 Identities=12% Similarity=0.110 Sum_probs=112.0
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
..+.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.+|..+|++++|+..+
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA------------------LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------------------TSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 334567889999999999999999999999999 78888999999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+++++++|++..+++.+|.+|..+|++++|++.|+++++++|++..++..++.+...+
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998887665
No 84
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.8e-13 Score=114.86 Aligned_cols=114 Identities=20% Similarity=0.323 Sum_probs=104.5
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..++..|+|++|+..|++++. ..|....++.++|.++..+|++++|+..+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3566788899999999999999999999998 7777788999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE------PNDGGIKKELAVA 341 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~------P~~~~~~~~l~~~ 341 (347)
+++++|+++.+++.+|.++..+|++++|+..|+++++++ |.+..+...+..+
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999999999999999999 9888888887765
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.42 E-value=2e-12 Score=99.82 Aligned_cols=115 Identities=30% Similarity=0.400 Sum_probs=102.4
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+..+|..++..|++++|+..|+++++ ..+....++.++|.++...|++++|+..+++++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 63 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3567788889999999999999999998 6666778899999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
..|.+..+++.+|.++...|++++|+..+++++++.|.+..+...++.+....
T Consensus 64 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 116 (136)
T 2fo7_A 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888877765443
No 86
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.42 E-value=6.4e-13 Score=106.80 Aligned_cols=88 Identities=9% Similarity=0.050 Sum_probs=84.4
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
.+|....+++++|.++...|+|++|+..+++++.++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
+.+...++
T Consensus 96 g~~~~~~g 103 (148)
T 2vgx_A 96 AECLLQXG 103 (148)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 98876654
No 87
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.41 E-value=1.5e-12 Score=110.03 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=97.0
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+..+|..++..|+|++|+..|.++++ ..|....+++++|.++..+|++++|+.++++++
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 98 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSIN------------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL 98 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45789999999999999999999999999 778888999999999999999999999999999
Q ss_pred hcCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054 292 RDGDDNV----------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 292 ~~~p~~~----------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 332 (347)
++.|.+. .+++.+|.+|..+|++++|+..|+++++++|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 99 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9888776 9999999999999999999999999999999754
No 88
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=8e-13 Score=126.71 Aligned_cols=117 Identities=14% Similarity=0.041 Sum_probs=109.3
Q ss_pred HHHHHHcCccccch---------hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-----
Q 019054 212 VDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----- 277 (347)
Q Consensus 212 a~~~~~~g~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----- 277 (347)
+..+..+|..+... |+|++|+..|+++++ ..|....+|+++|.+|..+
T Consensus 170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ------------------MDVLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHHHhhc
Confidence 35677888899998 999999999999999 8889999999999999999
Q ss_pred ---CChHHHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 278 ---GDLKGALLDTEFAMRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 278 ---~~~~~A~~~~~~al~~~p---~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
|++++|+..+++|++++| .++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+...++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999988888776553
No 89
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=2.9e-12 Score=112.20 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=103.2
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..+++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 102 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3577889999999999999999999999999 7788889999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
+++++|.+..+++.+|.+|..+|++++|+..|+++++++|.+......+
T Consensus 103 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (275)
T 1xnf_A 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151 (275)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999998544433
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=4.5e-12 Score=103.66 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=106.6
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+..+|..++..|++++|+..|.++++ ..|....++.++|.++...|++++|+..+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLA------------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45678889999999999999999999998 667778899999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+....+
T Consensus 104 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 104 EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998888887765543
No 91
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=3.3e-12 Score=109.68 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=76.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|++++|+..|+++++ ..+....++.++|.++..+|++++|+..++++
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALE------------------LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456677778888888888888888888877 44555556666666666666666666666666
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
++++|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+...
T Consensus 118 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666655555554433
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.38 E-value=5.7e-13 Score=133.39 Aligned_cols=117 Identities=11% Similarity=-0.013 Sum_probs=105.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|+++++ .+|....+++++|.++..+|++++|+.+|++|
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 493 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAE------------------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEV 493 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhc------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346788889999999999999999999999 88888999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++++|+++.+++++|.+|..+|++++ +..|+++++++|++..++..++.+...++
T Consensus 494 l~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g 548 (681)
T 2pzi_A 494 LDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEG 548 (681)
T ss_dssp HHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999 99999999999999999988888876654
No 93
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=5.8e-14 Score=105.95 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=82.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.|+.++|++++|+.+++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT------------------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 466788889999999999999999999998 77778888999999999999999999999999
Q ss_pred hhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 291 l~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
++++|++ ..+++++|.++..+|++++|+..+++
T Consensus 65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999988 88899999999998888888766554
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=1.6e-12 Score=113.92 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=99.1
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH---HHHHHHHHHHHHHcCChHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
.+..++..|..+++.|+|++|+..|+++++ ..|.. ..+++++|.||.++|+|++|+..+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 75 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFT------------------YGRTHEWAADAQFYLARAYYQNKEYLLAASEY 75 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGG------------------GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 467889999999999999999999999998 54444 889999999999999999999999
Q ss_pred HHHhhcCCCC---hhHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054 288 EFAMRDGDDN---VKALFRQGQAYMA--------LNDVDAAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 288 ~~al~~~p~~---~~a~~~~g~~~~~--------~~~~~~A~~~~~~al~l~P~~~~~~~~ 337 (347)
++++++.|++ ..+++.+|.++.. +|++++|+..|+++++++|++..+...
T Consensus 76 ~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 136 (261)
T 3qky_A 76 ERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA 136 (261)
T ss_dssp HHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence 9999998855 6799999999999 999999999999999999998776633
No 95
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.37 E-value=4.6e-12 Score=116.22 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=98.7
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
..+|..+...|++++|+..|+++++ ..|. ...++.++|.++..+|++++|+..+++++++
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 181 RRMSKSPVDSSVLEGVKELYLEAAH------------------QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp --------CCHHHHHHHHHHHHHHH------------------HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH------------------hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3458899999999999999999999 6666 7789999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+...++
T Consensus 243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999988876654
No 96
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.37 E-value=3.1e-12 Score=97.65 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 019054 230 MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYM 309 (347)
Q Consensus 230 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 309 (347)
.|+..|+++++ ..|....+++++|.++..+|++++|+..++++++++|++..+++.+|.+|.
T Consensus 3 ~a~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLA------------------QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHT------------------TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 57889999998 788888999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHh
Q 019054 310 ALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKV 345 (347)
Q Consensus 310 ~~~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~ 345 (347)
.+|++++|+..|+++++++|. +......+....+.+
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence 999999999999999999984 555566665555444
No 97
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.36 E-value=3.3e-12 Score=116.86 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=106.3
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|++++|+..|+++++ ..|....++.++|.++..+|++++|+..++++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALS------------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356678889999999999999999999998 77777889999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHhc
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-----------GGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-----------~~~~~~l~~~~~~~~ 346 (347)
++++|++..+++.+|.+|..+|++++|+..|+++++++|.+ ..++..++.+...++
T Consensus 278 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988 788888888876654
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=4.1e-13 Score=134.43 Aligned_cols=113 Identities=14% Similarity=0.016 Sum_probs=107.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|+++++ ++|....+++++|.++.++|++++ +.+|++|
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLD------------------TFPGELAPKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 356688899999999999999999999999 899999999999999999999999 9999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..++.+.
T Consensus 527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988887764
No 99
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.36 E-value=4.9e-12 Score=114.68 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=104.9
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.....|..+++.|++++|+..|++++...+. .......++.++|.++.++|++++|+..+++++++
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS--------------VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3456688999999999999999999983211 12233466889999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+..++..++
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887764
No 100
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.36 E-value=1.7e-12 Score=106.78 Aligned_cols=113 Identities=16% Similarity=0.115 Sum_probs=99.5
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
...+..++..|+|++|+..|++++. ..|....++.++|.+|..+|++++|+..++++++++|
T Consensus 14 ~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 75 (177)
T 2e2e_A 14 RDPLHQFASQQNPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG 75 (177)
T ss_dssp STTTCCCC-----CCCCHHHHHHHH------------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhccCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3456678899999999999999999 7888889999999999999999999999999999999
Q ss_pred CChhHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 296 DNVKALFRQGQA-YMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 296 ~~~~a~~~~g~~-~~~~~~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+++.+++.+|.+ +...|++ ++|+..|+++++++|.+..++..++.+....+
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 129 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQA 129 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc
Confidence 999999999999 8899999 99999999999999999999999988766543
No 101
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.36 E-value=2.3e-12 Score=118.27 Aligned_cols=118 Identities=18% Similarity=0.197 Sum_probs=108.2
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..+...|+|++|+..|+++++ ..|....++.++|.++.++|++++|+..++++
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALT------------------VRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788899999999999999999999999 77888899999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHhc
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------------GGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------------~~~~~~l~~~~~~~~ 346 (347)
++++|+++.+++.+|.+|..+|++++|+..|+++++++|.+ ..++..++.+...++
T Consensus 274 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 274 LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999873 567777777766554
No 102
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.36 E-value=3.1e-12 Score=118.44 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=90.7
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+..+|..+.+.|++++|+..|+++++ ..|....++.++|.++.++|++++|+..++++++
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALR------------------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555666666666666655 5666777888888888888888888888888888
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.+...++
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 888888888888888888888888888888888888888888888888777654
No 103
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=1.2e-12 Score=125.56 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=112.3
Q ss_pred hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-------
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL------- 277 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l------- 277 (347)
+....+.+..+..+|..++..|+|++|+..|+++++ ..|. ..++.++|.++..+
T Consensus 130 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~-~~~~~~lg~~~~~~~~~~~~~ 190 (474)
T 4abn_A 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT------------------HCKN-KVSLQNLSMVLRQLQTDSGDE 190 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------------------TCCC-HHHHHHHHHHHTTCCCSCHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCC-HHHHHHHHHHHHHhccCChhh
Confidence 333444577889999999999999999999999999 6666 58999999999999
Q ss_pred --CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHH
Q 019054 278 --GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL--------NDVDAAVESFEKALKLEP---NDGGIKKELAVAKKK 344 (347)
Q Consensus 278 --~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~--------~~~~~A~~~~~~al~l~P---~~~~~~~~l~~~~~~ 344 (347)
|++++|+..+++|++++|+++.+|+.+|.+|..+ |++++|+..|+++++++| .+..++..++.+...
T Consensus 191 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~ 270 (474)
T 4abn_A 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY 270 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999 999999999988776
Q ss_pred hc
Q 019054 345 VS 346 (347)
Q Consensus 345 ~~ 346 (347)
++
T Consensus 271 ~g 272 (474)
T 4abn_A 271 EE 272 (474)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 104
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=4.3e-12 Score=103.78 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=108.7
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|++++|+..|+++++ ..|....++..+|.++...|++++|+..++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 68 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD------------------ADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC------------------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466788899999999999999999999998 66667889999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++.+|.+..+++.+|.++...|++++|+..|+++++++|.+..+...++.+....+
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 124 (186)
T 3as5_A 69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999888887765543
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.35 E-value=4.5e-12 Score=113.25 Aligned_cols=118 Identities=10% Similarity=0.064 Sum_probs=103.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH---
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT--- 287 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~--- 287 (347)
.+..+...|..+...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+..+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ------------------LSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH------------------hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 456678899999999999999999999999 88888899999999999999888876554
Q ss_pred -------------------------------HHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHH
Q 019054 288 -------------------------------EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGI 334 (347)
Q Consensus 288 -------------------------------~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~ 334 (347)
+++++++|++..+++.+|.+|...|++++|+..|+++++++|++ ..+
T Consensus 178 ~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 178 PLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred chhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 44567789999999999999999999999999999999999998 888
Q ss_pred HHHHHHHHHHhc
Q 019054 335 KKELAVAKKKVS 346 (347)
Q Consensus 335 ~~~l~~~~~~~~ 346 (347)
+..+..+...++
T Consensus 258 ~~~l~~~~~~~g 269 (287)
T 3qou_A 258 RXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC
Confidence 999988877765
No 106
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=7e-12 Score=107.63 Aligned_cols=113 Identities=22% Similarity=0.206 Sum_probs=64.2
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+..+|..+...|++++|+..|+++++ ..+....++.++|.++..+|++++|+..+++++
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALR------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45556667777777777777777777776 333444455555555555555555555555555
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
++.|.+..+++.+|.++...|++++|+..|+++++++|.+..+...++.+.
T Consensus 153 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555554444443
No 107
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.34 E-value=5e-12 Score=100.47 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=83.9
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
.+|.....++++|.++++.|+|++|+..+++++.++|+++.+|+.+|.+|..+|++++|+..|+++++++|+++.++..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
+.+...++
T Consensus 93 g~~~~~~g 100 (142)
T 2xcb_A 93 AECHLQLG 100 (142)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 88876654
No 108
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.34 E-value=1.8e-11 Score=107.07 Aligned_cols=117 Identities=17% Similarity=0.094 Sum_probs=104.5
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
..++..+...++|++|+..|+++++... ...+....++.++|.++..+|++++|+..++++++++|
T Consensus 9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 74 (275)
T 1xnf_A 9 EVLAVPLQPTLQQEVILARMEQILASRA--------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 74 (275)
T ss_dssp GGSCCCCCCCHHHHHHHHHHHHHHTSSC--------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cceeeccCccchHHHHHHHHHHHHhccc--------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC
Confidence 3466677888999999999999998210 12577889999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
.++.+++.+|.+|..+|++++|+..|+++++++|.+..++..++.+...++
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999988876554
No 109
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.33 E-value=8.4e-12 Score=109.27 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=102.0
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+..+|..+...|++++|+..|+++++ ..|....++.++|.+|..+|++++|+..+++++
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVD------------------RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 45678899999999999999999999999 778888899999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+++|.++.+++.+|...+..+++++|+..|+++++++|.+..+...++.+...+
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 189 (272)
T 3u4t_A 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ 189 (272)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 999999999999994444456999999999999999999988888887776554
No 110
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.9e-11 Score=105.64 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=111.2
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcccc---CCCC-----hhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK---EGID-----EGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (347)
+..+..+|..+...|++++|+..|++++++.+..... .... -+......|....++.++|.++..+|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 6788899999999999999999999999843210000 0000 0001114567788999999999999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 284 LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 284 ~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+..+++++.++|.++.+++.+|.++..+|++++|+..|+++++++|.+..+...++.+...++
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999988876654
No 111
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.32 E-value=9.3e-12 Score=115.22 Aligned_cols=135 Identities=17% Similarity=0.130 Sum_probs=90.2
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc-----------ccCCCCh-----hhhhhHHhhHHHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGIDE-----GKSSSLRKTKSQIFTNSSACK 274 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~nla~~~ 274 (347)
.+..+..+|..+...|++++|+..|+++++.-+... .....+. .......|....++.++|.++
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence 355667777788888888888888888877322100 0001111 011124556667777777777
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
.++|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|.+..+...++.+....
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777777777777777777777777777777777665544
No 112
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.32 E-value=1.4e-11 Score=106.67 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=63.4
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc-----------cccCCCCh-----hhhhh--HHhhHHHHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC-----------WEKEGIDE-----GKSSS--LRKTKSQIFTNSSAC 273 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~-----------~~~~~~~~-----~~~~~--~~~~~~~~~~nla~~ 273 (347)
+..+..+|..++..|++++|+..|+++++..+.. ......+. +.... ..+....++.++|.+
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 4556667777777777777777777777621100 00000000 00000 223344444555555
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+..+|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|++++++.|.+..+...+..+.
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555544444444443
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.32 E-value=6.9e-12 Score=107.70 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=95.9
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+..+|..+++.|+|++|+..|+++++..+ ..+....+++++|.+|.++|+|++|+..+++++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 68 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 56788899999999999999999999998211 123345789999999999999999999999999
Q ss_pred hcCCCChh---HHHHHHHHHHh------------------cCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054 292 RDGDDNVK---ALFRQGQAYMA------------------LNDVDAAVESFEKALKLEPNDGGIKK 336 (347)
Q Consensus 292 ~~~p~~~~---a~~~~g~~~~~------------------~~~~~~A~~~~~~al~l~P~~~~~~~ 336 (347)
+.+|++.. +++.+|.++.. +|++++|+..|+++++..|+++.+..
T Consensus 69 ~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 134 (225)
T 2yhc_A 69 RLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD 134 (225)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred HHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 99999875 89999999986 57999999999999999999886554
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.32 E-value=7.9e-12 Score=103.04 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=83.5
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHH----------
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL---------- 284 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~---------- 284 (347)
+...|..++..|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 70 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD------------------ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH------------------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc
Confidence 34455555666666666666666666 55666666666666666666655554
Q ss_pred ------------------------HHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHH
Q 019054 285 ------------------------LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKEL 338 (347)
Q Consensus 285 ------------------------~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~~l 338 (347)
..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|.. ..++..+
T Consensus 71 p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 44555566788889999999999999999999999999999999975 5688888
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
..+...++
T Consensus 151 ~~~~~~~g 158 (176)
T 2r5s_A 151 MDILSALG 158 (176)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 88776654
No 115
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.32 E-value=4.9e-12 Score=98.77 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=69.9
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
..+..+.++.++|.++++.|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|.+..
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 345667889999999999999999999999999999999999999999999999999999999999999987653
No 116
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.32 E-value=4.6e-12 Score=110.94 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
..++.++|.++..+|++++|+.+++++++++|.++.++..+|.+|..+|++++|+..|+++++++|.+..++..++
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 3345555555555555555555555555555555555555555555555555555555555555555555555554
No 117
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.31 E-value=1.5e-11 Score=104.07 Aligned_cols=116 Identities=16% Similarity=0.028 Sum_probs=83.7
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEFA 290 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~A~~~~~~a 290 (347)
+..+..+|..+...|++++|+..|.++++ ..|....++.++|.++..+ |++++|+..++++
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALS------------------IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA 103 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44455566666666666666666666666 5566667777788888888 8888888888888
Q ss_pred hh--cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 291 MR--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 291 l~--~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
++ .+|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+....
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 104 LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 77 55666777788888888888888888888888888887777777777665544
No 118
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.31 E-value=1.9e-11 Score=103.30 Aligned_cols=118 Identities=14% Similarity=-0.034 Sum_probs=87.8
Q ss_pred hHHHHHHcCccccch-hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
.+..+..+|..++.. |++++|+..|+++++ .+ ..+....++.++|.++..+|++++|+..+++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 138 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DP---------------TYPTPYIANLNKGICSAKQGQFGLAEAYLKR 138 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST---------------TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc---------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345566777777777 888888888887775 10 3345567777888888888888888888888
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP-NDGGIKKELAVAKKK 344 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P-~~~~~~~~l~~~~~~ 344 (347)
+++.+|.+..+++.+|.++..+|++++|+..|+++++++| .+......+..+...
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (225)
T 2vq2_A 139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA 194 (225)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888 777777666655444
No 119
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.31 E-value=9.7e-12 Score=112.68 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=105.0
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..++++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 457789999999999999999999999999 78888899999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP---NDGGIKKELA 339 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P---~~~~~~~~l~ 339 (347)
++++|++..+++.+|.++..+|++++|+..|+++++++| .+..+...+.
T Consensus 64 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 999999999999999999999999999999999999999 8888877764
No 120
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.31 E-value=5.6e-12 Score=113.15 Aligned_cols=123 Identities=17% Similarity=0.097 Sum_probs=105.8
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|++++|+..|+++++..+..... ...+....++.++|.++..+|++++|+..++++
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE---------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS---------CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc---------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35667888888889999999999999998843221100 011455679999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...++.+.
T Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876
No 121
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=1.2e-11 Score=108.26 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=101.7
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH--------cCChHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--------LGDLKGA 283 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------l~~~~~A 283 (347)
+..+..+|..+++.|+|++|+..|+++++..+ ..+....+++++|.|+.. +|++++|
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A 116 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---------------IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKA 116 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC---------------CCchhHHHHHHHHHHHHHhcccccccchhHHHH
Confidence 67789999999999999999999999999321 123567889999999999 9999999
Q ss_pred HHHHHHHhhcCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 019054 284 LLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVAKK 343 (347)
Q Consensus 284 ~~~~~~al~~~p~~~~a~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~ 343 (347)
+..++++++.+|++..+. +.+|.+|..+|+|++|+..|+++++..|++ +.+...++.+..
T Consensus 117 ~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 117 IEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 999999999999986665 899999999999999999999999999984 456666666554
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.8e-11 Score=93.67 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
..+..+.++|.++++.|+|++|+..++++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhc
Q 019054 342 KKKVS 346 (347)
Q Consensus 342 ~~~~~ 346 (347)
...++
T Consensus 82 ~~~~~ 86 (126)
T 3upv_A 82 QIAVK 86 (126)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 76654
No 123
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.30 E-value=1.3e-11 Score=110.56 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=107.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|++++|+..|+++++ ..|....++.++|.++..+|++++|+..++++
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVE------------------LRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356778889999999999999999999998 77777889999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHhc
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN------------DGGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~------------~~~~~~~l~~~~~~~~ 346 (347)
++++|++..+++.+|.++..+|++++|+..|++++++.|. +..++..++.+...++
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999 6888888888776654
No 124
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.30 E-value=3.9e-11 Score=86.76 Aligned_cols=85 Identities=31% Similarity=0.435 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
+....++.++|.++..++++++|+.+++++++++|++..+++.+|.++..+|++++|+..|+++++++|.+..+...++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHh
Q 019054 341 AKKKV 345 (347)
Q Consensus 341 ~~~~~ 345 (347)
+...+
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87654
No 125
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=2e-11 Score=109.23 Aligned_cols=122 Identities=9% Similarity=-0.083 Sum_probs=100.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-CChHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEF 289 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~A~~~~~~ 289 (347)
.+..+.++|..+.+.|+|++|+.+|++|+.+.... ........++.++|.+|..+ |++++|+.+|++
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR------------GQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 46788999999999999999999999999954321 01123467899999999995 999999999999
Q ss_pred HhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHH
Q 019054 290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-------IKKELAVAKKK 344 (347)
Q Consensus 290 al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~-------~~~~l~~~~~~ 344 (347)
|+++.|.. ..++.++|.+|..+|+|++|+..|++++++.|.+.. +...++.+...
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 99998754 578999999999999999999999999999998654 34555555443
No 126
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.28 E-value=2e-11 Score=114.87 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=102.4
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
...|..+++.|++++|+..|+++++..+. .......++.++|.++.++|++++|+..++++++++|
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPS--------------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 44599999999999999999999982210 1112256899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+++.+|+.+|.++..+|++++|+..|+++++++|+++.+...+..++..+
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998776554
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=2.2e-11 Score=93.83 Aligned_cols=102 Identities=30% Similarity=0.462 Sum_probs=94.9
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
...+..+|..++..|++++|+..|++++. ..+....++.++|.++..+|++++|+..+++++
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 96 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45677789999999999999999999998 666677889999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 331 (347)
...|.+..+++.+|.++..+|++++|+..|+++++++|.+
T Consensus 97 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 97 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999863
No 128
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.28 E-value=1.9e-11 Score=114.97 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=106.2
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
+..+..+..+|..+++.|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34678899999999999999999999999999 778889999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAV 340 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~l~~ 340 (347)
++++++|++..+++.+|.+|..+|++++|+..|+++++++|.+. .++..+..
T Consensus 85 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 139 (450)
T 2y4t_A 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 76665543
No 129
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.28 E-value=1.4e-11 Score=106.67 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=65.1
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|++++|+..|+++++. .|....++.++|.++..+|++++|+..++++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI------------------DPSSADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4778899999999999999999999999983 3333444444444444444444444444444
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK--LEPNDGGIKKELAV 340 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~~l~~ 340 (347)
++++|.+..+++.+|.++..+|++++|+..|+++++ ..|.+..+...++.
T Consensus 98 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 444444444444444444444444444444444444 34444444443333
No 130
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.27 E-value=5.3e-11 Score=89.39 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKK 336 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~ 336 (347)
...++.++|.++..+|+|++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999998 77777
Q ss_pred HHHHHHHHhc
Q 019054 337 ELAVAKKKVS 346 (347)
Q Consensus 337 ~l~~~~~~~~ 346 (347)
.++.+...++
T Consensus 83 ~~~~~~~~~~ 92 (111)
T 2l6j_A 83 RLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 131
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.27 E-value=2.3e-11 Score=109.15 Aligned_cols=118 Identities=19% Similarity=0.065 Sum_probs=105.7
Q ss_pred hHHHHHHcCccccchh-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
.+..+..+|..++..| ++++|+..|+++++ ..|....++.++|.++..+|++++|+..+++
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 150 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATT------------------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFT 150 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHT------------------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4567788888999999 89999999999998 6777788899999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++++.|.+..+++.+|.+|..+|++++|+..|+++++++|.+..+...++.+....+
T Consensus 151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999998888887765543
No 132
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.26 E-value=2.8e-11 Score=103.91 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=98.8
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH---HHHHHHHHHHHHH------------
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLK------------ 276 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~------------ 276 (347)
...+..+|..+++.|+|++|+..|+++++ ..|.. ..+++.+|.++.+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~------------------~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 102 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIR------------------LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGV 102 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCTTHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 46788899999999999999999999999 44433 3478888988876
Q ss_pred ------cCChHHHHHHHHHHhhcCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-
Q 019054 277 ------LGDLKGALLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPNDG- 332 (347)
Q Consensus 277 ------l~~~~~A~~~~~~al~~~p~~~~a~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~- 332 (347)
+|++++|+..++++++.+|++..++ +.+|.+|...|++++|+..|+++++..|+++
T Consensus 103 ~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 182 (225)
T 2yhc_A 103 DRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA 182 (225)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred chhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence 5789999999999999999987654 6789999999999999999999999999987
Q ss_pred --HHHHHHHHHHHHhc
Q 019054 333 --GIKKELAVAKKKVS 346 (347)
Q Consensus 333 --~~~~~l~~~~~~~~ 346 (347)
.++..++.+..+++
T Consensus 183 ~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 183 TRDALPLMENAYRQMQ 198 (225)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcC
Confidence 45667777665554
No 133
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.4e-11 Score=115.98 Aligned_cols=106 Identities=24% Similarity=0.306 Sum_probs=99.3
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
.+.+..++..|+.+++.|+|++|+..|+++++ ..| ...++.++|.|+.++|++++|+..++
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 63 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALE------------------LKE-DPVFYSNLSACYVSVGDLKKVVEMST 63 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH------------------HCC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHh------------------cCc-cHHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 35788999999999999999999999999999 556 47899999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
++++++|++..+++.+|.+|..+|++++|+..|+++++++|.+..
T Consensus 64 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999996544
No 134
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.26 E-value=2.3e-11 Score=90.69 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=74.8
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKK 336 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~ 336 (347)
.+|....+++++|.+|..+|++++|+..++++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 356778899999999999999999999999999999999999999999999999999999999999999874 555666
Q ss_pred HHHHHHHH
Q 019054 337 ELAVAKKK 344 (347)
Q Consensus 337 ~l~~~~~~ 344 (347)
.+..+...
T Consensus 82 ~l~~~l~~ 89 (100)
T 3ma5_A 82 ELQDAKLK 89 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 135
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=3.5e-11 Score=105.18 Aligned_cols=128 Identities=17% Similarity=0.109 Sum_probs=107.8
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
...+..+..+|..++..|+|++|+..|.+++++...... ...+....++.++|.++..+|++++|+.+++
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 109 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 109 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC----------CcchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 345778899999999999999999999999984321100 1246778899999999999999999999999
Q ss_pred HHhhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhc
Q 019054 289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 289 ~al~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--------~P~~~~~~~~l~~~~~~~~ 346 (347)
+++.+ +|....+++.+|.+|..+|++++|+..|++++++ .|....+...++.+....+
T Consensus 110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 99988 5777899999999999999999999999999999 6666677777777765543
No 136
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.24 E-value=5.4e-11 Score=106.52 Aligned_cols=128 Identities=11% Similarity=0.054 Sum_probs=87.6
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc---------cc----CCCCh-----hhhhhHHhhHHHHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW---------EK----EGIDE-----GKSSSLRKTKSQIFTNSSAC 273 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~---------~~----~~~~~-----~~~~~~~~~~~~~~~nla~~ 273 (347)
...+..+|..+.+.|++++|+..|+++++.-+... .. ..... ++.....|..+.+++++|.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~ 209 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC 209 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44556667777777777777777777766322100 00 00000 00112456667788888888
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCHHHHHHHH
Q 019054 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA-AVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~-A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
++++|++++|+..++++++++|+++.+++++|.++..+|++++ |.+.++++++++|+++.+.....
T Consensus 210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~ 276 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 8888888888888888888888888888888888888888865 45777888888888887776543
No 137
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.23 E-value=7.9e-11 Score=107.59 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=102.0
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
..|..+ ..|++++|+..|+++++ ..|. ...++.++|.++..+|++++|+..+++++.++
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVR------------------LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHH------------------HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHh-hcccHHHHHHHHHHHHH------------------hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344444 89999999999999999 6677 78899999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
|+++.+++.+|.++..+|++++|+..|+++++++|.+..+...++.+...++
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999988876654
No 138
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.22 E-value=8.5e-11 Score=105.23 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 278 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++.++..+.
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555554443
No 139
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=6.5e-11 Score=112.26 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=101.4
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|.+++..|+|++|+++|++|+++.+.... ...++.....|.|+|.+|..+|++++|+.+++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~---------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA---------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG---------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc---------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3567788999999999999999999999996543211 1134556778999999999999999999999999
Q ss_pred hhcC--------CCChhHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 291 MRDG--------DDNVKALFRQGQAYMAL--NDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 291 l~~~--------p~~~~a~~~~g~~~~~~--~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+++. +..+.++..+|.++... ++|++|+.+|+++++++|+++.+...++.+.
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9763 34578888888887665 5799999999999999999999888877664
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.21 E-value=9.2e-11 Score=90.64 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
..++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999998887665
Q ss_pred hc
Q 019054 345 VS 346 (347)
Q Consensus 345 ~~ 346 (347)
.+
T Consensus 98 ~g 99 (121)
T 1hxi_A 98 EH 99 (121)
T ss_dssp HH
T ss_pred cC
Confidence 43
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.21 E-value=1.1e-10 Score=94.71 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=81.9
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
.+..+..+.++|.++++.|+|++|+..|+++++++|+++.+|+.+|.+|..+|+|++|+.+|+++++++|.+..++..++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 019054 340 VAKKKVS 346 (347)
Q Consensus 340 ~~~~~~~ 346 (347)
.+...++
T Consensus 87 ~~~~~~g 93 (164)
T 3sz7_A 87 LARFDMA 93 (164)
T ss_dssp HHHHHTT
T ss_pred HHHHHcc
Confidence 8877654
No 142
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=6.2e-11 Score=105.97 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=89.7
Q ss_pred hHHHHHHcCccccch-hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
.+..+..+|..+... |+|++|+.+|++|+++.+.. ........++.++|.++.++|+|++|+.++++
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD------------QSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC------------CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 356788999999996 99999999999999943211 01112357899999999999999999999999
Q ss_pred HhhcCCCChh-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 290 AMRDGDDNVK-------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 290 al~~~p~~~~-------a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
++++.|++.. +++++|.++..+|++++|+..|+++++++|....
T Consensus 184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 9999987643 6899999999999999999999999999998654
No 143
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.20 E-value=9.6e-11 Score=94.34 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-------Chh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-------NVK-----ALFRQGQAYMALNDVDAAVESFEKALKL-- 327 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~-------~~~-----a~~~~g~~~~~~~~~~~A~~~~~~al~l-- 327 (347)
..+..+.++|..++++|+|++|+..|++||+++|+ +.. +|+++|.++..+|+|++|+.+|++|+++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 35667899999999999999999999999999999 443 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHhcC
Q 019054 328 -----EPNDGGIK----KELAVAKKKVSR 347 (347)
Q Consensus 328 -----~P~~~~~~----~~l~~~~~~~~~ 347 (347)
+|++..++ .+++.+...+++
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr 117 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGR 117 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCC
Confidence 99999999 998888877654
No 144
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=6.4e-11 Score=115.77 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHH
Q 019054 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (347)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~ 304 (347)
.|++++|+..|+++++ ..|....++.++|.++..+|++++|+..++++++++|++..+++.+
T Consensus 2 ~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 63 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR------------------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63 (568)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4789999999999999 8888899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 305 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
|.+|..+|++++|++.|+++++++|++..++..++.+...++
T Consensus 64 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999998876654
No 145
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.20 E-value=2.2e-10 Score=102.54 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=101.8
Q ss_pred Cc-cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 019054 219 GN-EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (347)
Q Consensus 219 g~-~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~ 297 (347)
|. .+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+..++++++++|++
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 205 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALE------------------MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhHHHHHcccHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 44 58899999999999999999 777788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
..+++.+|.++..+|++++|+..|+++++++|.+..+...++.+...++
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998888776554
No 146
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.19 E-value=1.1e-10 Score=112.20 Aligned_cols=88 Identities=14% Similarity=0.035 Sum_probs=74.6
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
..|....++.++|.++..+|++++|+..++++++++|++..+++.+|.++..+|++++|+..|+++++++|.+..++..+
T Consensus 305 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 384 (537)
T 3fp2_A 305 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 56677788888888888889999999999999888888888888889999888999999999999988888888888888
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
+.+....+
T Consensus 385 ~~~~~~~g 392 (537)
T 3fp2_A 385 AEILTDRG 392 (537)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 77765543
No 147
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.17 E-value=1.1e-11 Score=91.74 Aligned_cols=89 Identities=18% Similarity=0.121 Sum_probs=48.8
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHH-HHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
..|..++..|+|++|+..|+++++ ..|.... +++++|.++..+|++++|+.+++++++++|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ------------------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH------------------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344455555555555555555555 4444555 555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (347)
Q Consensus 296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 331 (347)
++..++++ +.+.+|+..|+++..++|++
T Consensus 67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 67 DSPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp TSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred CcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 55555433 34455555555555555543
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.17 E-value=2.9e-11 Score=110.54 Aligned_cols=105 Identities=20% Similarity=0.195 Sum_probs=96.8
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------ 297 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------ 297 (347)
..+++++|+..|++++. ..+..+.++.++|.+++++|+|++|+..|++|+.++|.+
T Consensus 125 ~L~~~~~A~~~~~~a~~------------------~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~ 186 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSE------------------EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE 186 (336)
T ss_dssp EEEEEECCCCGGGCCHH------------------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH
T ss_pred EEeecccccchhcCCHH------------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChH
Confidence 45677778888888887 889999999999999999999999999999999999998
Q ss_pred ---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 298 ---------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 298 ---------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
..+++++|.+|..+|+|++|+.+|+++++++|++..++..++.+...++
T Consensus 187 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 244 (336)
T 1p5q_A 187 EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 6999999999999999999999999999999999999999998876654
No 149
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.16 E-value=1e-10 Score=84.48 Aligned_cols=84 Identities=26% Similarity=0.323 Sum_probs=78.3
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++.++|++++|+.+++++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 466788999999999999999999999999 77778889999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcC
Q 019054 291 MRDGDDNVKALFRQGQAYMALN 312 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~ 312 (347)
++++|++..++..+|.++..+|
T Consensus 70 ~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 70 LELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998764
No 150
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=1.4e-10 Score=101.24 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=95.5
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
...+..+..+|..++..|+|++|+..|.+++++...... ...+....++.++|.++..+|++++|+.+++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 151 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345778899999999999999999999999995432100 0146788999999999999999999999999
Q ss_pred HHhhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 289 ~al~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+++++ .|....++..+|.+|..+|++++|+..|++++++
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998 7777899999999999999999999999999987
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.15 E-value=3.3e-10 Score=88.47 Aligned_cols=88 Identities=10% Similarity=0.056 Sum_probs=81.1
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
..+..+..+.++|.+++..|+|++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|.+..++..+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
+.+...++
T Consensus 84 ~~~~~~~~ 91 (137)
T 3q49_B 84 GQCQLEME 91 (137)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 98876654
No 152
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.15 E-value=2.2e-10 Score=111.76 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=98.0
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhH-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
+..+..+|..+.+.|++++|+..|+++++..+.. ..+|.. ..+|.++|.+|.++|++++|+..++++
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT------------QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------------CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc------------ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3445666666777777777777777776622110 013332 679999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
++++|+++.+|+.+|.+|...|++++|++.|+++++++|+++.++..|+.+.
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888764
No 153
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.14 E-value=4.1e-10 Score=82.99 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHH
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK--KELAVAKK 343 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~-a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~--~~l~~~~~ 343 (347)
.+++|.++.+.|++++|+..++++++++|++.. +++.+|.+|..+|++++|+..|+++++++|++..++ ..+..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999 999999999999999999999999999999999887 55555544
Q ss_pred H
Q 019054 344 K 344 (347)
Q Consensus 344 ~ 344 (347)
.
T Consensus 83 ~ 83 (99)
T 2kc7_A 83 F 83 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 154
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.14 E-value=2.6e-10 Score=109.60 Aligned_cols=118 Identities=20% Similarity=0.166 Sum_probs=109.4
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..++..|++++|+..|+++++ ..|. ..++.++|.++..+|++++|+..+++
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~------------------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESIN------------------LHPT-PNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHh------------------cCCC-chHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3466788899999999999999999999999 6677 78999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++.++|+++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....+
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999998888876543
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.13 E-value=1.3e-10 Score=86.86 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHH
Q 019054 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKEL 338 (347)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~~l 338 (347)
|....++.++|.++...|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|. +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3455678999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHh
Q 019054 339 AVAKKKV 345 (347)
Q Consensus 339 ~~~~~~~ 345 (347)
+.+...+
T Consensus 83 ~~~~~~~ 89 (112)
T 2kck_A 83 ADALRYI 89 (112)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 8887654
No 156
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.13 E-value=2.9e-10 Score=105.22 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=92.3
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..++..|++++|+.+|.+|+++.+... ...+....++.++|.+|..+|++++|+.++++
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 209 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE-----------AYNIRLLQCHSLFATNFLDLKQYEDAISHFQK 209 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3677889999999999999999999999999654320 01445567788888888888888888888888
Q ss_pred HhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----C-CCCHHHHHHHHHHHHHh
Q 019054 290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKL-----E-PNDGGIKKELAVAKKKV 345 (347)
Q Consensus 290 al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~-P~~~~~~~~l~~~~~~~ 345 (347)
|+++.+.. +.+++++|.+|..+|++++|+..|++++++ + |....+...++.+...+
T Consensus 210 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (383)
T 3ulq_A 210 AYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL 277 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence 88765433 357788888888888888888888888873 4 55556666666665443
No 157
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.12 E-value=1.5e-10 Score=103.44 Aligned_cols=107 Identities=10% Similarity=0.079 Sum_probs=92.8
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+.+|+++++.+... ....+....+++|+|.+|.++|+|++|+.++++|
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-----------HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----------ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45678999999999999999999999999865432 0145567789999999999999999999999999
Q ss_pred hhcCCCC------hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhC
Q 019054 291 MRDGDDN------VKALFRQGQAYMALN-DVDAAVESFEKALKLE 328 (347)
Q Consensus 291 l~~~p~~------~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~ 328 (347)
+++.+.. +.+++++|.+|..+| .+++|+..|++|+.+.
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9886543 789999999999999 5799999999999874
No 158
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.12 E-value=3.7e-10 Score=89.82 Aligned_cols=106 Identities=13% Similarity=0.178 Sum_probs=94.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcC-C-CC
Q 019054 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDTEFAMRDG-D-DN 297 (347)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~~~~al~~~-p-~~ 297 (347)
........+.+.|.+.+. ..+....+.+++|.|+.+.+ +.++++..++.+++.+ | .+
T Consensus 9 l~~~~l~~~~~~y~~e~~------------------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~ 70 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ 70 (152)
T ss_dssp CCHHHHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch
Confidence 345667778888888877 55677889999999999988 6779999999999998 7 56
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
.+++|++|.+|+.+++|++|.++++++++++|++.++......++++++
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888764
No 159
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.11 E-value=4.5e-10 Score=89.30 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=90.2
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..++..|+|++|+.+|.+++++.+.. ........++.++|.++..+|++++|+.++++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367788999999999999999999999999854321 12234456899999999999999999999999
Q ss_pred HhhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 290 al~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
++.+.+.. ..+++.+|.++..+|++++|+..+++++++.+
T Consensus 75 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99876543 67899999999999999999999999998854
No 160
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.10 E-value=2.8e-10 Score=108.53 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=95.8
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHH------HHHHHHHHHHH---cCChHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ------IFTNSSACKLK---LGDLKG 282 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~nla~~~~~---l~~~~~ 282 (347)
+..+..+|..++..|++++|+..|+++++ ..|.... ++.++|.++.. +|++++
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIE------------------LENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 34455666666666677777777776666 5555533 89999999999 999999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 283 A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
|+..+++++.++|++..+++.+|.+|..+|++++|+..|+++++++|.++.+...+...+.
T Consensus 434 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887665543
No 161
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.10 E-value=5.4e-10 Score=109.02 Aligned_cols=118 Identities=16% Similarity=0.032 Sum_probs=104.2
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..+.+.|++++|+..|+++++ ..|....+|.+++.+|.+.|++++|+..++++
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSST------------------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 355677788888999999999999999988 67777889999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++..|++..+++.+|.+|...|++++|++.|+++++++|.+..++..+..+....+
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999988888877765443
No 162
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.09 E-value=2.7e-10 Score=91.67 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=89.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|.++++ ..|....++.++|.++..+|++++|+.+++++
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 466788899999999999999999999999 77888899999999999999999999999999
Q ss_pred hhcCCCChhHHHH--HHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 291 MRDGDDNVKALFR--QGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 291 l~~~p~~~~a~~~--~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
++++|.+..++.. ++..+..+|++++|+..++++..+.
T Consensus 108 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999999888855 4555888999999999999887653
No 163
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.09 E-value=5.2e-10 Score=103.52 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=95.3
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..+...|+|++|+.+|.+|+++.+.. ...+....++.|+|.+|..+|++++|+.++++
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE------------KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 356778899999999999999999999999965432 12455667999999999999999999999999
Q ss_pred Hhh-----cC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 290 AMR-----DG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 290 al~-----~~-p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
|++ .+ |..+.+++.+|.+|..+|++++|+..+++++++.+
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 998 46 77899999999999999999999999999999864
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.08 E-value=8.5e-11 Score=112.06 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=95.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC------
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------ 297 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------ 297 (347)
..++|++|+..|.+++. ..+..+.++.++|.+++++++|++|+..|++|++++|.+
T Consensus 246 ~l~~~~~A~~~~~~~~~------------------~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~ 307 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTK------------------EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK 307 (457)
T ss_dssp EEEEEECCCCGGGSCHH------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH
T ss_pred hhhhcccCcchhhcCHH------------------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChH
Confidence 45667777777777777 788899999999999999999999999999999999998
Q ss_pred ---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 298 ---------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 298 ---------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
..+|+++|.+|..+++|++|+.+|+++++++|++..++..++.+...++
T Consensus 308 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g 365 (457)
T 1kt0_A 308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN 365 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 6999999999999999999999999999999999999999998876654
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.08 E-value=3.4e-10 Score=94.80 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=87.8
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh--
Q 019054 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV-- 298 (347)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~-- 298 (347)
.....++|+.|.+.|..... ..+.....+.++|.+++..|+|++|+..+++++.+.|.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 74 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDE------------------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW 74 (198)
T ss_dssp ---------CCCSGGGCCHH------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC
T ss_pred hhhhhhhccccCchhhCCHH------------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 33445556666655554444 6677788999999999999999999999999999999887
Q ss_pred --------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 299 --------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 299 --------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
.+++++|.+|..+|+|++|+.+|+++++++|.+..+...++.+...++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 136 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG 136 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999999988876554
No 166
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=7.8e-10 Score=102.25 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=96.6
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..+...|+|++|+.+|.+|+++.+.. ...+....++.|+|.+|..+|++++|+.++++
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI------------QNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 357778899999999999999999999999965322 12345678899999999999999999999999
Q ss_pred Hhh-----cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 290 AMR-----DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 290 al~-----~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
|+. .+|..+.+++.+|.+|..+|++++|+..+++++++.+.
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999 78888999999999999999999999999999999664
No 167
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.07 E-value=2e-10 Score=103.41 Aligned_cols=105 Identities=13% Similarity=0.015 Sum_probs=50.8
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+.++|..+...|+|++|+.+|++|+.+.... ........++.++|.+|.. |++++|+.++++|+
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN------------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 4455556666666666666666666666643211 0011223444445555544 55555555555554
Q ss_pred hcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 292 RDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 292 ~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
.+.|.. ..++.++|.+|..+|+|++|+..|++++++.|
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 443322 34444445555555555555555555554443
No 168
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.07 E-value=4.6e-10 Score=99.63 Aligned_cols=127 Identities=17% Similarity=0.114 Sum_probs=105.3
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..++..|++++|+..|++++++...... ...+....++.++|.++..+|++++|+..+++
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 136 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 136 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC----------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 34667888999999999999999999999985422100 02467788999999999999999999999999
Q ss_pred HhhcC--------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhc
Q 019054 290 AMRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 290 al~~~--------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--------~P~~~~~~~~l~~~~~~~~ 346 (347)
++++. |....+++.+|.++..+|++++|+..|++++++ .|....+...++.+....+
T Consensus 137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 209 (311)
T 3nf1_A 137 ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 99874 566889999999999999999999999999998 6666667777777665543
No 169
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.06 E-value=7.3e-10 Score=98.33 Aligned_cols=109 Identities=12% Similarity=0.057 Sum_probs=94.1
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
...+..+..+|..++..|++++|+..|++++++...... ...+....++.++|.++..+|++++|+.+++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345677889999999999999999999999984321100 0236778899999999999999999999999
Q ss_pred HHhhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 289 ~al~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+++.+ .|....+++.+|.+|..+|++++|+..|++++++
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99988 6777889999999999999999999999999985
No 170
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-09 Score=83.66 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=82.0
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
..+....+++++|.++...|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
+.+...++
T Consensus 91 a~~~~~~~ 98 (133)
T 2lni_A 91 AAALEAMK 98 (133)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88876554
No 171
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.06 E-value=5.6e-10 Score=100.42 Aligned_cols=116 Identities=10% Similarity=0.051 Sum_probs=76.8
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHH-HHHHHHHHHHHcCChHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
.+..+...|..+.+.|++++|...|+++++ ..|.... +|.++|.++.++|++++|+..+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLA------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------ccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344566777777777888888888888887 4444443 677777777777777777777777
Q ss_pred HhhcCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYM-ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~-~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
|++.+|.+..+|...+.... .+|++++|+..|+++++++|++..++..+..+...
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 77776666666655544432 25677777777777777777666666666555443
No 172
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=6.2e-10 Score=100.18 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=91.8
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+.++|..+.. |+|++|+.+|++|+++.+.. ........++.++|.+|.++|+|++|+.+++++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE------------ERLRQAAELIGKASRLLVRQQKFDEAAASLQKE 181 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC------------CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788899999998 99999999999999954321 012234678999999999999999999999999
Q ss_pred hhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054 291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 291 l~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 332 (347)
+.+.|.+ ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus 182 l~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 9987654 3588999999999999999999999999 999644
No 173
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=9.7e-10 Score=101.59 Aligned_cols=126 Identities=16% Similarity=0.038 Sum_probs=103.2
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..++..|+++.|+.+|.+|+++.+.. ....+..+.++.++|.+|..+|+|++|+.++++
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 207 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-----------PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEA 207 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-----------CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 356778888888889999999999999998865422 001345678999999999999999999999999
Q ss_pred HhhcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHhc
Q 019054 290 AMRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALK-----LEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 290 al~~~p------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~-----l~P~~~~~~~~l~~~~~~~~ 346 (347)
|+++.+ ..+.+++++|.+|..+|++++|+..|+++++ .+|....+...++.+...++
T Consensus 208 al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 275 (378)
T 3q15_A 208 ALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC
Confidence 998743 1257899999999999999999999999999 77777777888877765543
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.04 E-value=1.2e-09 Score=88.46 Aligned_cols=85 Identities=18% Similarity=0.134 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------------------CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD------------------GDDNVKALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~------------------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
..+..+.++|..+++.|+|++|+..|++|+.+ +|.+..+|+++|.+|..+|+|++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35678999999999999999999999999999 777889999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhc
Q 019054 324 ALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 324 al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+++++|.+..++..++.+...++
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g 111 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAW 111 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HHhcCCcchHHHHHHHHHHHHHh
Confidence 99999999999999998877654
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.03 E-value=8.8e-10 Score=91.81 Aligned_cols=107 Identities=9% Similarity=0.029 Sum_probs=92.0
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+.+|.+++++.... ...+....++.++|.++..+|++++|+.+++++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 92 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS------------GDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56778899999999999999999999999965432 235567788999999999999999999999999
Q ss_pred hhc---CC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 291 MRD---GD----DNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 291 l~~---~p----~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
+.+ .+ ....+++.+|.++..+|++++|+..+++++++.+
T Consensus 93 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 988 33 2367899999999999999999999999998753
No 176
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.02 E-value=3.8e-09 Score=79.33 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
.+..++++|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++++|.+..+...++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHhc
Q 019054 343 KKVS 346 (347)
Q Consensus 343 ~~~~ 346 (347)
...+
T Consensus 83 ~~~~ 86 (118)
T 1elw_A 83 EFLN 86 (118)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6543
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.02 E-value=1.1e-09 Score=104.89 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=101.0
Q ss_pred hhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (347)
Q Consensus 204 ~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (347)
........+....+.+..+..+|+|++|+..|+++|++....... ..|..+..+.|+|.+|..+|+|++|
T Consensus 301 ~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~----------~Hp~~a~~~~nLa~~y~~~g~~~eA 370 (490)
T 3n71_A 301 VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFAD----------TNLYVLRLLSIASEVLSYLQAYEEA 370 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCT----------TSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 344455566667777777888999999999999999965543222 4677889999999999999999999
Q ss_pred HHHHHHHhhc-----CCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHH
Q 019054 284 LLDTEFAMRD-----GDD---NVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKKE 337 (347)
Q Consensus 284 ~~~~~~al~~-----~p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~P~~~~~~~~ 337 (347)
+.+++++|++ .|+ -+..+.++|.+|..+|+|++|+..|++|+++ -|+++.....
T Consensus 371 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 437 (490)
T 3n71_A 371 SHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDL 437 (490)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999965 233 4678999999999999999999999999986 4677765543
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.01 E-value=1.3e-10 Score=106.28 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=59.0
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+.++|..+++.|+|++|+.+|+++|+ ++|.+..+++++|.+|..+|+|++|+.++++++++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLT------------------EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678899999999999999999999999 88889999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 294 GDDNVKALFRQGQAY-MALNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~-~~~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
+|++..++..++.+. ...+..++|...|++++.+.|.++..
T Consensus 294 ~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 294 APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp ------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 999999999999984 45567888999999999999987654
No 179
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.01 E-value=5.7e-09 Score=79.79 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=82.2
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
..+....++..+|.++...+++++|+..+++++..+|++..+++.+|.++..+|++++|+..++++++++|.+..+...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
+.+...++
T Consensus 87 ~~~~~~~~ 94 (131)
T 2vyi_A 87 GLALSSLN 94 (131)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 88766543
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.00 E-value=8.3e-11 Score=112.75 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=93.2
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
..+.+..+..+|..+++.|+|++|+..|++|++ .+|....+++++|.+|..+|++++|+..+
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 97 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDY 97 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344577889999999999999999999999999 78888999999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhhCCCC
Q 019054 288 EFAMRDGDDNVKALFRQGQA--YMALNDVDAAVESFE-----------KALKLEPND 331 (347)
Q Consensus 288 ~~al~~~p~~~~a~~~~g~~--~~~~~~~~~A~~~~~-----------~al~l~P~~ 331 (347)
++|++++|++..++..++.+ +..+|++++|++.++ ++++++|..
T Consensus 98 ~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 98 ETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999 889999999999999 888888753
No 181
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=9.4e-10 Score=98.14 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=94.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+.+|++|+.+..... ........+++|+|.+|.++|+|++|+.+++++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~-----------~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-----------ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 467889999999999999999999999997543210 011123378999999999999999999999999
Q ss_pred hhcCCC------ChhHHHHHHHHHHhcCCHHHH-HHHHHHHHhhCC--CCHHHHHHHHHH
Q 019054 291 MRDGDD------NVKALFRQGQAYMALNDVDAA-VESFEKALKLEP--NDGGIKKELAVA 341 (347)
Q Consensus 291 l~~~p~------~~~a~~~~g~~~~~~~~~~~A-~~~~~~al~l~P--~~~~~~~~l~~~ 341 (347)
+++.+. -+.+++++|.+|..+|++++| ...|++|+.+.. ++......+...
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~ 282 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNK 282 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHH
Confidence 987643 278999999999999999999 788999988753 344444444433
No 182
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.99 E-value=4.6e-09 Score=92.21 Aligned_cols=76 Identities=22% Similarity=0.058 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 263 KSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 263 ~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
...+++++|.+|.. .+++++|+.+++++++.+ ++.+++.+|.+|.. .+++++|+..|++++++. +..+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 148 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG 148 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence 45566666666666 666666666666666653 56666666666666 666666666666666654 4455
Q ss_pred HHHHHHHH
Q 019054 335 KKELAVAK 342 (347)
Q Consensus 335 ~~~l~~~~ 342 (347)
...++.+.
T Consensus 149 ~~~lg~~~ 156 (273)
T 1ouv_A 149 CTILGSLY 156 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.99 E-value=3e-09 Score=81.92 Aligned_cols=82 Identities=20% Similarity=0.156 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKEL 338 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~l 338 (347)
.+++++|.+++..|+|++|+..++++++.+|++. .+++.+|.++..+|++++|+..|+++++++|++ +.+...+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999998 899999999999999999999999999999999 7888888
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
+.+...++
T Consensus 83 a~~~~~~g 90 (129)
T 2xev_A 83 GLSQYGEG 90 (129)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 88766544
No 184
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.99 E-value=8.4e-10 Score=104.53 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=96.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc--CChHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDLKGALLDTE 288 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~~~A~~~~~ 288 (347)
.+..+.++|.+++..|+|++|+.+|++++++.+..... ..+..+.++.++|.++.++ ++|++|+.+|+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ 162 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP----------YRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS----------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc----------cchhhHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 35567889999999999999999999999865433111 1223456788888777765 46999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 289 FAMRDGDDNVKALFRQGQAYMA---LNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~---~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+|++++|+++.+++.+|.++.. .+++++|++.|+++++++|.+..+...++...
T Consensus 163 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 9999999999999998888554 56778899999999999999988887776543
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.99 E-value=1.9e-09 Score=85.56 Aligned_cols=107 Identities=21% Similarity=0.170 Sum_probs=91.0
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+..+|..++..|+|++|+.+|++++++.+.. ...+....++.++|.++..+|++++|+.++++++
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4578889999999999999999999999965432 1233457789999999999999999999999999
Q ss_pred hcCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 292 RDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 292 ~~~p~------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
.+.+. ...+++.+|.++..+|++++|+..+++++++...
T Consensus 117 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 117 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 77432 2678999999999999999999999999988654
No 186
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.99 E-value=4.4e-09 Score=99.14 Aligned_cols=124 Identities=12% Similarity=0.090 Sum_probs=97.5
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
....+......+......|+|++|+..|+++|++....... ..|..+..+.|+|.+|..+|+|++|+.++
T Consensus 294 ~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~----------~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~ 363 (433)
T 3qww_A 294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFED----------SNVYMLHMMYQAMGVCLYMQDWEGALKYG 363 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCT----------TSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccCh----------hchHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 33344444444555556789999999999999965543222 46778889999999999999999999999
Q ss_pred HHHhhc--------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHH
Q 019054 288 EFAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKKELAVA 341 (347)
Q Consensus 288 ~~al~~--------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~P~~~~~~~~l~~~ 341 (347)
+++|++ .|+-+..+.++|.+|..+|+|++|+..|++|+++ -|+++.+......+
T Consensus 364 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 364 QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 999965 2344678999999999999999999999999987 47788776654444
No 187
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.99 E-value=6.4e-10 Score=99.25 Aligned_cols=122 Identities=15% Similarity=0.067 Sum_probs=95.9
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+..+|..++..++|++|+.+|++++.+.... . .......++.++|.+|..+|+|++|+.++++|++
T Consensus 116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~------~------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------I------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC------S------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc------c------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344568888888999999999999999832211 0 1123456899999999999999999999999994
Q ss_pred c-------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhc
Q 019054 293 D-------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKVS 346 (347)
Q Consensus 293 ~-------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~ 346 (347)
. .+....+++++|.+|..+|+|++|+..+++++++.+.. ..+...++.+...++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 250 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence 2 22336799999999999999999999999999987644 567777777766554
No 188
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.97 E-value=6.7e-10 Score=103.17 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=100.2
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..++..|+|++|+..|+++++..+ ........++.++|.+|..+|++++|+.++++
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGT--------------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc--------------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4677788999999999999999999999999311 01223446899999999999999999999999
Q ss_pred Hhhc------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHH
Q 019054 290 AMRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPNDGGIKKELAVAKKK 344 (347)
Q Consensus 290 al~~------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l------~P~~~~~~~~l~~~~~~ 344 (347)
++++ .|....+++.+|.+|..+|++++|+..|++++++ .|....+...++.+...
T Consensus 112 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 9988 5777899999999999999999999999999999 44444566666655443
No 189
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.97 E-value=2.9e-09 Score=94.91 Aligned_cols=121 Identities=17% Similarity=0.076 Sum_probs=91.1
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh-
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM- 291 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al- 291 (347)
..+..+|..+...|+|++|+.+|.+++...... ........++.++|.+|..+|+|++|+.++++|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------------IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS------------SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC------------CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334556777777788888888888888732211 0112246689999999999999999999999999
Q ss_pred --hcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHh
Q 019054 292 --RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKV 345 (347)
Q Consensus 292 --~~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~ 345 (347)
+..|++ ..+++++|.+|..+|+|++|+..|++++++.+.. ..+...++.+...+
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~ 249 (293)
T 2qfc_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT
T ss_pred HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 445553 3699999999999999999999999999986431 45666666665544
No 190
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=4.6e-09 Score=89.19 Aligned_cols=132 Identities=17% Similarity=0.056 Sum_probs=89.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhh--------hccccCC--CChhhh-----hhHHhhHHHHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD--------ICWEKEG--IDEGKS-----SSLRKTKSQIFTNSSACKL 275 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~--------~~~~~~~--~~~~~~-----~~~~~~~~~~~~nla~~~~ 275 (347)
.+.++..+|..++..+++++|+.+|+++++.=. .+..... .+.++. ....+..+.+++++|.+|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLV 96 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355566666666666666666666666654211 0000000 011110 1234556778888999988
Q ss_pred H----cCChHHHHHHHHHHhhcCC--CChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 276 K----LGDLKGALLDTEFAMRDGD--DNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 276 ~----l~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
. .+++++|+.++++|++..+ .++.+++++|.+|.. .+++++|+.+|+++.++ |.++.+...|+.+..
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 7 8889999999999998887 358899999999988 88899999999999888 667777777777653
No 191
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.96 E-value=2.8e-09 Score=94.10 Aligned_cols=108 Identities=11% Similarity=-0.018 Sum_probs=93.4
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh-HHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+..|..+++.++|++|+.+|++++.. .++. ...+++++|.++..+|++++|+.+|++++.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~-----------------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKW-----------------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGC-----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcc-----------------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6688888999999999999999877661 1222 246899999999999999999999999996
Q ss_pred cC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 293 DG--DD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 293 ~~--p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
.. |. ...+++++|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus 200 g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 200 SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 54 65 6789999999999999999999999999999999 88877764
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.95 E-value=5.4e-10 Score=89.78 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=67.5
Q ss_pred hHHHHhhHHHHHHcCccccchhhH----------HHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHH
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQDY----------KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK 274 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g~y----------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~ 274 (347)
.+..++.+..+.+.|.++...+++ ++|+..|++||+ ++|....+|+|+|.+|
T Consensus 29 i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~------------------ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 29 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHH
Confidence 333455678899999999998876 599999999999 9999999999999999
Q ss_pred HHcC-----------ChHHHHHHHHHHhhcCCCCh
Q 019054 275 LKLG-----------DLKGALLDTEFAMRDGDDNV 298 (347)
Q Consensus 275 ~~l~-----------~~~~A~~~~~~al~~~p~~~ 298 (347)
..+| ++++|+.+|++|++++|++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 9985 89999999999999999874
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=3.2e-09 Score=103.78 Aligned_cols=119 Identities=6% Similarity=-0.088 Sum_probs=109.5
Q ss_pred HhhHHHHHHcCccccchhh----------HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC
Q 019054 209 MNAVDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~ 278 (347)
++...++...+..+...++ |++|+..|.++++ .+|....+|..++.+..+++
T Consensus 60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~------------------~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTCS
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcc
Confidence 4446677888888888888 9999999999999 99999999999999999999
Q ss_pred --ChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 279 --DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 279 --~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
++++|+..|+++++++|.|..||..|+.++..++ .+++|++++.++++++|.|..++.....+...+
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 7799999999999999999999999999999999 999999999999999999999999888876553
No 194
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.95 E-value=2.5e-09 Score=98.54 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=96.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|++++++.+.. ...+....++.++|.++..+|++++|+.+++++
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34567889999999999999999999999955422 123344568899999999999999999999999
Q ss_pred hhcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHh
Q 019054 291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKV 345 (347)
Q Consensus 291 l~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~ 345 (347)
+.+.+.. ..+++.+|.+|..+|++++|+..|++++++.+.. ..+...++.+....
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9877655 6788899999999999999999999999886543 34555555554443
No 195
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=6e-09 Score=81.91 Aligned_cols=88 Identities=18% Similarity=0.114 Sum_probs=81.0
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 335 (347)
..+.....++.+|.+++..|+|++|+..++++++++|++ ..+++.+|.+|..++++++|+..|+++++++|.+..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 445677889999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 019054 336 KELAVAKKKVS 346 (347)
Q Consensus 336 ~~l~~~~~~~~ 346 (347)
..++.+...++
T Consensus 103 ~~~a~~~~~~~ 113 (148)
T 2dba_A 103 YRRSQALEKLG 113 (148)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 88888776554
No 196
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.93 E-value=1.2e-08 Score=77.25 Aligned_cols=84 Identities=29% Similarity=0.368 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
...++.++|.++...+++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++++|.+..+...++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999888888776
Q ss_pred HHhc
Q 019054 343 KKVS 346 (347)
Q Consensus 343 ~~~~ 346 (347)
...+
T Consensus 88 ~~~~ 91 (125)
T 1na0_A 88 YKQG 91 (125)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 5543
No 197
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.92 E-value=1.2e-08 Score=91.58 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHhh-c
Q 019054 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-------LGDL-------KGALLDTEFAMR-D 293 (347)
Q Consensus 229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~-------~~A~~~~~~al~-~ 293 (347)
+.|+..|++++. ..|..+.+|+++|..+.. +|++ ++|+..+++|++ +
T Consensus 33 ~~a~~~~~~al~------------------~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~ 94 (308)
T 2ond_A 33 KRVMFAYEQCLL------------------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 94 (308)
T ss_dssp HHHHHHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH------------------HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh
Confidence 789999999999 889999999999998874 5886 899999999999 7
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHh
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-IKKELAVAKKKV 345 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~-~~~~l~~~~~~~ 345 (347)
+|++..+|..+|.++..+|++++|...|+++++++|.+.. ++..++.+..+.
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 147 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876 777777765543
No 198
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=5e-09 Score=93.06 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
.+..+.++|.++++.|+|++|+..++++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..+...++.+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHhc
Q 019054 343 KKVS 346 (347)
Q Consensus 343 ~~~~ 346 (347)
..++
T Consensus 83 ~~~g 86 (281)
T 2c2l_A 83 LEME 86 (281)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6654
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=2.3e-09 Score=104.70 Aligned_cols=120 Identities=10% Similarity=-0.046 Sum_probs=109.1
Q ss_pred HHHhhHHHHHHcCccccchh--hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHH
Q 019054 207 WWMNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGA 283 (347)
Q Consensus 207 ~~~~~a~~~~~~g~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A 283 (347)
..++...++...+..+.+.+ +|++|++.+.++++ .++.+..+|.+++.+..+++ .++++
T Consensus 102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~------------------~d~~N~~aW~~R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE------------------ADERNFHCWDYRRFVAAQAAVAPAEE 163 (567)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh------------------hccccccHHHHHHHHHHHcCCChHHH
Confidence 34455667888888888888 77999999999999 99999999999999999999 99999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 284 LLDTEFAMRDGDDNVKALFRQGQAYMAL--------------NDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 284 ~~~~~~al~~~p~~~~a~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+++++++|+.+|.+..||+.++.++..+ +.+++|++++.+|++++|++..++..++-+...
T Consensus 164 l~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 9999999999999999999999999986 568999999999999999999999998877654
No 200
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.91 E-value=5e-09 Score=96.54 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=101.3
Q ss_pred hHHHHHHcCccccchhh--------------------HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQD--------------------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~--------------------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl 270 (347)
.+..+..+|..++..|+ |++|+..|.+++.+.... ...+....++.++
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l 193 (406)
T 3sf4_A 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL------------GDRAAQGRAFGNL 193 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------------cCcHHHHHHHHHH
Confidence 35678899999999999 999999999999854332 1256677899999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 019054 271 SACKLKLGDLKGALLDTEFAMRDGDDNV------KALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKEL 338 (347)
Q Consensus 271 a~~~~~l~~~~~A~~~~~~al~~~p~~~------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l 338 (347)
|.++..+|++++|+..+++++++.+... .+++.+|.+|..+|++++|+..|++++++.|.. ..+...+
T Consensus 194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 273 (406)
T 3sf4_A 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 273 (406)
T ss_dssp HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH
Confidence 9999999999999999999998876553 399999999999999999999999999998765 4455556
Q ss_pred HHHHHH
Q 019054 339 AVAKKK 344 (347)
Q Consensus 339 ~~~~~~ 344 (347)
+.+...
T Consensus 274 a~~~~~ 279 (406)
T 3sf4_A 274 GNTYTL 279 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 201
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.91 E-value=4.4e-09 Score=97.60 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=95.0
Q ss_pred hhHHHHHHcCccccchhh-----------------HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQD-----------------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~-----------------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~ 272 (347)
..+..+..+|..+...|+ |++|+.+|.+++++.... ...+....++.++|.
T Consensus 164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL------------GDRGAQGRACGNLGN 231 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHH
Confidence 346678899999999999 999999999998854322 123556678888999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChh------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHH
Q 019054 273 CKLKLGDLKGALLDTEFAMRDGDDNVK------ALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAV 340 (347)
Q Consensus 273 ~~~~l~~~~~A~~~~~~al~~~p~~~~------a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l~~ 340 (347)
++..+|++++|+.++++++++.+.... +++.+|.+|..+|++++|+..|++++++.|.. ..+...++.
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999887765433 88889999999999999999999998887743 344555555
Q ss_pred HHHH
Q 019054 341 AKKK 344 (347)
Q Consensus 341 ~~~~ 344 (347)
+...
T Consensus 312 ~~~~ 315 (411)
T 4a1s_A 312 TYTL 315 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 202
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=6.2e-09 Score=93.58 Aligned_cols=119 Identities=7% Similarity=-0.072 Sum_probs=106.6
Q ss_pred hhHHHHHHcCccc----cch---hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH-
Q 019054 210 NAVDSIKVFGNEH----YKK---QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK- 281 (347)
Q Consensus 210 ~~a~~~~~~g~~~----~~~---g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~- 281 (347)
+....+...+..+ ... +++++++..+.++++ .+|.+..+|..++.+..+++.++
T Consensus 101 k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~------------------~~pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 101 KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS------------------SDPKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcccCh
Confidence 3445556666666 444 789999999999999 99999999999999999999999
Q ss_pred -HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 282 -GALLDTEFAMRDGDDNVKALFRQGQAYMALND------VDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 282 -~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
++++.++++|+.+|.|..||..|+.++..+++ ++++++.++++++++|+|..++..+..+....+
T Consensus 163 ~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 163 AKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998 999999999999999999999999988876654
No 203
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.91 E-value=1.1e-08 Score=89.68 Aligned_cols=78 Identities=18% Similarity=0.052 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 263 KSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 263 ~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
...++.++|.+|.. .+++++|+.+++++++.+ +..+++++|.+|.. .+++++|+..|++++++. +..+
T Consensus 109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 184 (273)
T 1ouv_A 109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPG 184 (273)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHH
Confidence 45667777777777 777777777777777765 56677777777776 777777777777777663 4566
Q ss_pred HHHHHHHHHH
Q 019054 335 KKELAVAKKK 344 (347)
Q Consensus 335 ~~~l~~~~~~ 344 (347)
...++.+...
T Consensus 185 ~~~lg~~~~~ 194 (273)
T 1ouv_A 185 CFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666655443
No 204
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.91 E-value=1.7e-09 Score=96.50 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=91.3
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+...|..++..|+|++|+..|+++++..+ ........++.++|.++..+|++++|+..++++
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 69 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT--------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 69 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc--------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345678889999999999999999999999311 012234678999999999999999999999999
Q ss_pred hhc------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 019054 291 MRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (347)
Q Consensus 291 l~~------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 331 (347)
+.+ .|....+++.+|.++..+|++++|+..+++++++.|..
T Consensus 70 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 977 45558899999999999999999999999999997753
No 205
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.90 E-value=7.5e-09 Score=79.24 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-------GGIK 335 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-------~~~~ 335 (347)
.+..++++|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..|++++++.|.+ ..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999877 7777
Q ss_pred HHHHHHHHHhc
Q 019054 336 KELAVAKKKVS 346 (347)
Q Consensus 336 ~~l~~~~~~~~ 346 (347)
..++.+...++
T Consensus 83 ~~la~~~~~~~ 93 (131)
T 1elr_A 83 ARIGNSYFKEE 93 (131)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 77777765543
No 206
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.88 E-value=3.7e-09 Score=94.25 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=98.3
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+..+|..++..|++++|+..|++++++.+.. ...+....++.++|.++..+|++++|+..+++++
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567889999999999999999999999854321 1233445689999999999999999999999999
Q ss_pred hcCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHh
Q 019054 292 RDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKV 345 (347)
Q Consensus 292 ~~~p~~------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~ 345 (347)
.+.+.. ..+++.+|.++..+|++++|+..|++++++.|.. ..+...++.+....
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 887655 7889999999999999999999999999987642 22455555554443
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.88 E-value=1.4e-08 Score=74.39 Aligned_cols=83 Identities=16% Similarity=0.053 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---H
Q 019054 261 KTKSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG---I 334 (347)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~---~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~---~ 334 (347)
|.++.++..+|.+++..++ .++|...+++||+++|+++++++.+|.+++..|+|++|+..|+++++.+|.++. +
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i 82 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTI 82 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Confidence 4567788999999987666 799999999999999999999999999999999999999999999999998543 4
Q ss_pred HHHHHHHHH
Q 019054 335 KKELAVAKK 343 (347)
Q Consensus 335 ~~~l~~~~~ 343 (347)
...+..++.
T Consensus 83 ~~~I~~A~~ 91 (93)
T 3bee_A 83 IESINKAKK 91 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.88 E-value=1.7e-08 Score=75.62 Aligned_cols=82 Identities=21% Similarity=0.104 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDG-------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 336 (347)
+.-++.+|..+++.++|..|+.++++|++.. +....++..+|.++..+|++++|+..++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4557899999999999999999999999763 345789999999999999999999999999999999999988
Q ss_pred HHHHHHHHh
Q 019054 337 ELAVAKKKV 345 (347)
Q Consensus 337 ~l~~~~~~~ 345 (347)
++..+++.+
T Consensus 85 n~~~~~~~~ 93 (104)
T 2v5f_A 85 NLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 888776654
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.88 E-value=5.7e-09 Score=98.41 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=95.9
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+...-..+.++|+|++|+..|+++++...... ....+.....+.|+|.+|..+|+|++|+.+++++|.
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l----------g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERL----------PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC----------CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC----------CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444444556678899999999999998433221 125677889999999999999999999999999995
Q ss_pred c-----CCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHH---HHHHHHHHh
Q 019054 293 D-----GDD---NVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKK---ELAVAKKKV 345 (347)
Q Consensus 293 ~-----~p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-----~P~~~~~~~---~l~~~~~~~ 345 (347)
+ .|+ -+..++++|.+|..+|++++|+..|++|+++ -|+++.... .|+.++..+
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 5 233 3678999999999999999999999999987 467776554 455555544
No 210
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=1.7e-08 Score=85.64 Aligned_cols=111 Identities=10% Similarity=-0.107 Sum_probs=95.8
Q ss_pred hHHHHHHcCccccc----hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHh--hHHHHHHHHHHHHHH----cCCh
Q 019054 211 AVDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK--TKSQIFTNSSACKLK----LGDL 280 (347)
Q Consensus 211 ~a~~~~~~g~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~----l~~~ 280 (347)
.+.++..+|..+.. .+++++|+.+|+++++ ..+ ..+.+++++|.+|.. .+++
T Consensus 84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------------------~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR------------------DSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------------------STTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------------------cCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 45678888888887 8899999999999988 444 458899999999999 8999
Q ss_pred HHHHHHHHHHhhcCCCChhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMAL-N-----DVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 281 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~-~-----~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
++|+.++++|+++ |.++.+++++|.+|..- + ++++|+.+|+++.+.. ++.+...|..+.
T Consensus 146 ~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l~ 210 (212)
T 3rjv_A 146 VKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRIS 210 (212)
T ss_dssp HHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhh
Confidence 9999999999999 77888999999999864 3 8999999999999984 677777777665
No 211
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.87 E-value=2.8e-09 Score=81.33 Aligned_cols=76 Identities=8% Similarity=0.030 Sum_probs=70.7
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
...+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.|+..+|++++|+..++
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVK------------------QFPNHQALRVFYAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45678899999999999999999999999999 888889999999999999999999999999
Q ss_pred HHhhcCCCChhHHH
Q 019054 289 FAMRDGDDNVKALF 302 (347)
Q Consensus 289 ~al~~~p~~~~a~~ 302 (347)
+++...|+++....
T Consensus 86 ~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 86 KIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHCCCHHHHH
T ss_pred HHHHhCCCcHHHHH
Confidence 99999999987654
No 212
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=8.6e-09 Score=84.55 Aligned_cols=121 Identities=7% Similarity=-0.070 Sum_probs=95.9
Q ss_pred HHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhh--h-------c--cccCCCC-----hhhhhhHHhhHHHHHHH
Q 019054 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD--I-------C--WEKEGID-----EGKSSSLRKTKSQIFTN 269 (347)
Q Consensus 206 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~--~-------~--~~~~~~~-----~~~~~~~~~~~~~~~~n 269 (347)
...++.+..+..+|..+...|++++|+..|+++++.-+ . + ....... -+......|....++++
T Consensus 34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~ 113 (176)
T 2r5s_A 34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE 113 (176)
T ss_dssp HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHH
Confidence 34455677889999999999999999999988876432 0 0 0000000 01112456778899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 270 SSACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 270 la~~~~~l~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
+|.++..+|++++|+..++++++++|+. ..+++.+|.++..+|++++|+..|++++.
T Consensus 114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999976 66999999999999999999999999875
No 213
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.85 E-value=4.2e-09 Score=97.51 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=86.9
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+.++|..+++.|+|++|+.+|+++++ .+|....+++++|.+|..++++++|+.++++
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALE------------------IDPSNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3467788999999999999999999999999 7888899999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVES 320 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~ 320 (347)
|++++|++..++..++.++..++++++|.+.
T Consensus 333 Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 333 AQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888754
No 214
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=1.3e-08 Score=91.55 Aligned_cols=118 Identities=7% Similarity=-0.155 Sum_probs=105.5
Q ss_pred HhhHHHHHHcCccccchh--hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHH----HHc---CC
Q 019054 209 MNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK----LKL---GD 279 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~l---~~ 279 (347)
++...++...|..+...+ ++++|+..+.++|. ..|....+|+.++.+. ..+ ++
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~------------------~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL------------------DNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------------------HCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH------------------HCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 334566777888888777 89999999999998 8999999999999999 777 89
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD--AAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~--~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+++++..++++++.+|.|..+|+.|+.++..++.++ ++++.+.++++.+|.|-.++.....+...
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 99999999999999999998877666543
No 215
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.84 E-value=1.2e-08 Score=84.88 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=90.7
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+..+|..+...|+|++|+..|.+++++..... ........++.++|.++..+|++++|+.++++
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP-----------EDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-----------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3567789999999999999999999999999654220 01225677899999999999999999999999
Q ss_pred HhhcCCC--C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 290 AMRDGDD--N----VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 290 al~~~p~--~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
++.+.+. + ..++..+|.++..+|++++|+..+++++++..
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 9976422 1 45678999999999999999999999999864
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.79 E-value=4.9e-09 Score=77.80 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=69.0
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|+++++ .+|....+|.++|.+|..+|++++|+..++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE------------------TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567789999999999999999999999999 88899999999999999999999999999999
Q ss_pred hhcCCCC--hhHHHHHHHHHH
Q 019054 291 MRDGDDN--VKALFRQGQAYM 309 (347)
Q Consensus 291 l~~~p~~--~~a~~~~g~~~~ 309 (347)
+++.|.+ ..+...+..++.
T Consensus 68 l~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 68 IEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHSCHHHHHHHHHHHH
T ss_pred HhhhhcCCchhHHHHHHHHHH
Confidence 9987643 333333444333
No 217
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.78 E-value=7e-08 Score=87.39 Aligned_cols=116 Identities=6% Similarity=-0.090 Sum_probs=101.7
Q ss_pred HHHHHHcCccccchhh----------HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC--
Q 019054 212 VDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-- 279 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-- 279 (347)
..++...+..+...++ +++++..+.+++. .+|.+..+|..++.+...+++
T Consensus 64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~------------------~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHhccCccc
Confidence 4445555555554444 7899999999998 899999999999999999994
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 019054 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALND-VDAAVESFEKALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 280 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+++++..|+++++++|.|..||..++.++..++. ++++++++.++++.+|.|..++.....+...+
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999 69999999999999999999998888776554
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.77 E-value=2.5e-08 Score=74.65 Aligned_cols=83 Identities=23% Similarity=0.150 Sum_probs=70.2
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+...+.+|..+++.++|..|+..|++|++....-. ........++.++|.|+.++|++++|+..+++|+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-----------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-----------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-----------CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 56678999999999999999999999998432100 0123466889999999999999999999999999
Q ss_pred hcCCCChhHHHHHH
Q 019054 292 RDGDDNVKALFRQG 305 (347)
Q Consensus 292 ~~~p~~~~a~~~~g 305 (347)
+++|++..++.+++
T Consensus 74 ~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 74 ELDPEHQRANGNLK 87 (104)
T ss_dssp HHCTTCHHHHHHHH
T ss_pred hcCCCCHHHHhhHH
Confidence 99999999988876
No 219
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.74 E-value=4.5e-08 Score=88.64 Aligned_cols=115 Identities=10% Similarity=-0.037 Sum_probs=102.4
Q ss_pred HhhHHHHHHcCccccchh--hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC-hHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALL 285 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A~~ 285 (347)
++...++...+..+...+ ++++++..+.+++. .+|.+..+|..++.+...++. ++++++
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~------------------~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE------------------ADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 344566677777777767 49999999999999 999999999999999999999 699999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 286 DTEFAMRDGDDNVKALFRQGQAYMAL--------------NDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 286 ~~~~al~~~p~~~~a~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
+++++|+.+|.|..||..++.++..+ +.++++++++.+++.++|+|..++..+.-+
T Consensus 167 ~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 167 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 236 (331)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999988 569999999999999999999999866543
No 220
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.73 E-value=8.8e-08 Score=75.52 Aligned_cols=98 Identities=17% Similarity=0.069 Sum_probs=86.1
Q ss_pred cCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHhhc
Q 019054 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRD 293 (347)
Q Consensus 218 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~ 293 (347)
+|..+...+.+++|+.+|++|.+ . ..+.+++++|.+|.. .+++++|+.++++|.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~------------------~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE------------------L--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc------------------C--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 78888888888999999999987 2 567899999999999 89999999999999987
Q ss_pred CCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 294 GDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
.++.+++++|.+|.. .+++++|+.+|++|.++. ++.+...|.
T Consensus 91 --g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 91 --NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred --CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 689999999999999 999999999999999984 566655544
No 221
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=2e-08 Score=89.40 Aligned_cols=122 Identities=9% Similarity=-0.086 Sum_probs=95.4
Q ss_pred hHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhh-----------ccccCCCCh-----hhhhhHHhhHHHHHH
Q 019054 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI-----------CWEKEGIDE-----GKSSSLRKTKSQIFT 268 (347)
Q Consensus 205 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~-----------~~~~~~~~~-----~~~~~~~~~~~~~~~ 268 (347)
+...++.+..+..+|..+...|++++|+..|+++++.-+. ......... .......|.+..+++
T Consensus 144 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~ 223 (287)
T 3qou_A 144 WQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALAT 223 (287)
T ss_dssp HHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHH
Confidence 3344456777888888888888888888888877653220 000000110 111346788899999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 269 NSSACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 269 nla~~~~~l~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
++|.++..+|++++|+..+.++++.+|++ ..++.+++.++..+|+.++|+..|++++.
T Consensus 224 ~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 224 QLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999998 89999999999999999999999999875
No 222
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=3.3e-08 Score=90.03 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCChhHHHHHHH
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~~p~~~~a~~~~g~ 306 (347)
.++|+..+.++|. ++|....+|+.++.+...++ .+++++..++++|..+|.+..+|+.|+.
T Consensus 70 se~AL~lt~~~L~------------------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 70 SERALELTEIIVR------------------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp SHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3456666666666 56666666666666666666 3666666666666666666666666666
Q ss_pred HHHhc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 307 AYMAL-N-DVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 307 ~~~~~-~-~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
++..+ + +++++++.+.++++++|.|..++....-+
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wv 168 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWL 168 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 66665 5 56666666666666666666655544443
No 223
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=9.3e-08 Score=87.06 Aligned_cols=87 Identities=7% Similarity=-0.090 Sum_probs=75.5
Q ss_pred hHHHHHHcCccccchh-hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc-C-ChHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-G-DLKGALLDT 287 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~-~~~~A~~~~ 287 (347)
....+...+..+...+ .+++++..+.++|. .+|.+..+|..++.+...+ + ++++++..+
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~------------------~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAV------------------QNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3555677788887778 59999999999998 8889999999999999988 7 899999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhcCCHH
Q 019054 288 EFAMRDGDDNVKALFRQGQAYMALNDVD 315 (347)
Q Consensus 288 ~~al~~~p~~~~a~~~~g~~~~~~~~~~ 315 (347)
+++|+.+|.|..||+.|+.++..++.++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999988877655
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.70 E-value=1.3e-07 Score=72.45 Aligned_cols=103 Identities=13% Similarity=0.148 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHH---HHHHHHHHhhcC-C-CChhH
Q 019054 226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG---ALLDTEFAMRDG-D-DNVKA 300 (347)
Q Consensus 226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~---A~~~~~~al~~~-p-~~~~a 300 (347)
.....+.+.|.+.+. ..+....+.+++|.|+.+..+... +|..++..++.+ | ..-.+
T Consensus 15 ~~l~~~~~~y~~e~~------------------~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~ 76 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDY 76 (126)
T ss_dssp HHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 455566677777766 455677889999999999888777 999999999987 5 56899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
+|.+|.+++.+|+|++|.+.++.+++.+|+|.++......+++++.
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888764
No 225
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=3.2e-08 Score=87.32 Aligned_cols=116 Identities=14% Similarity=-0.014 Sum_probs=96.1
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
......+..+...|+|++|.+.|...+. ..|... +.+.+|.++++.++|++|+..+++++.
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~------------------~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPV------------------AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCC------------------TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 3445567778889999999999998887 667777 899999999999999999999998887
Q ss_pred cCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHhcC
Q 019054 293 DGDDN--VKALFRQGQAYMALNDVDAAVESFEKALKLE--PN-DGGIKKELAVAKKKVSR 347 (347)
Q Consensus 293 ~~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~-~~~~~~~l~~~~~~~~~ 347 (347)
..+.. ..+++.+|.++..+|++++|+..|++++.-. |. ..++...++.+...+++
T Consensus 164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN 223 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC
T ss_pred cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC
Confidence 64222 4689999999999999999999999998654 55 55677777777776653
No 226
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.65 E-value=3.8e-08 Score=94.22 Aligned_cols=115 Identities=10% Similarity=-0.031 Sum_probs=95.2
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+.++|..|..+|+|++|+.+|+++|.+....... ..|..+..++|+|.+|..+|+|++|+..+++
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH----------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT----------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 457788999999999999999999999999976544222 5678889999999999999999999999999
Q ss_pred Hhhc-----CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 019054 290 AMRD-----GDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (347)
Q Consensus 290 al~~-----~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 334 (347)
|+++ .|++ .+.+-.++.++..++.|++|...|+++.+-.-++..+
T Consensus 419 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~ 471 (490)
T 3n71_A 419 AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPM 471 (490)
T ss_dssp HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9965 4554 5677889999999999999999999998755344443
No 227
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.64 E-value=6.6e-08 Score=93.43 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=71.3
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHH-HHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS-QIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
.+..+...|..+.+.|++++|...|+++++ ..|... .+|.+++.++.++|++++|+..+++
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLA------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC------------------ccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345566677777788899999999999988 333322 3566666666666666666666666
Q ss_pred HhhcCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 290 AMRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 290 al~~~p~~~~a~~~~g~~-~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
|++..|.+...+...+.. +...|++++|...|+++++.+|+++.++..+..+.
T Consensus 382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~ 435 (530)
T 2ooe_A 382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL 435 (530)
T ss_dssp HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 666666555555544433 23456666666666666666666666555555443
No 228
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.62 E-value=2.6e-08 Score=75.41 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=69.6
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..++++
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALD------------------FDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466789999999999999999999999999 78888999999999999999999999999999
Q ss_pred hhcCCCC--hhHHHHHHHHHHh
Q 019054 291 MRDGDDN--VKALFRQGQAYMA 310 (347)
Q Consensus 291 l~~~p~~--~~a~~~~g~~~~~ 310 (347)
++++|.. ..++..+...+..
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHH
Confidence 9998854 3444444444333
No 229
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.62 E-value=2.4e-07 Score=84.93 Aligned_cols=108 Identities=14% Similarity=0.023 Sum_probs=79.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+..+..+|..++..|+|++|+..|++++++.+.. ........++.++|.++..+|++++|+..++++
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 119 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH------------DVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34567778888888999999999999998854321 011223455778888888888888888888888
Q ss_pred hhcC--------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 291 l~~~--------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
+.+. |....++..+|.++..+|++++|...+++++++.|.
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 7664 334566777888888888888888888888888764
No 230
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.52 E-value=5e-07 Score=82.72 Aligned_cols=108 Identities=12% Similarity=0.010 Sum_probs=89.5
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+..+..+|..++..|+|++|+..|+++++........ ..+....++.++|.++..+|++++|+..+++++
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE----------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT----------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc----------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3446788999999999999999999999954321000 014566788999999999999999999999999
Q ss_pred hcCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 292 RDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 292 ~~~p~~-----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
.+.+.. ..++..+|.++...|++++|...+++++.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 163 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 887652 46889999999999999999999999998843
No 231
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.49 E-value=4e-07 Score=86.99 Aligned_cols=77 Identities=18% Similarity=0.047 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---
Q 019054 262 TKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPN--- 330 (347)
Q Consensus 262 ~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~--- 330 (347)
..+.+++++|.+|.. .+++++|+.++++|++.. ++.+++++|.+|.. .+++++|+..|++|++..|+
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 438 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFG 438 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcC
Confidence 456789999999998 899999999999998864 68899999999998 89999999999999999854
Q ss_pred CHHHHHHHHH
Q 019054 331 DGGIKKELAV 340 (347)
Q Consensus 331 ~~~~~~~l~~ 340 (347)
++.+...++.
T Consensus 439 ~~~a~~~l~~ 448 (490)
T 2xm6_A 439 TENRNITEKK 448 (490)
T ss_dssp HHHHHHHHTT
T ss_pred CHHHHHHHHh
Confidence 6666665543
No 232
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.48 E-value=1.5e-06 Score=83.93 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHhh-
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-------LGDLK-------GALLDTEFAMR- 292 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~~-------~A~~~~~~al~- 292 (347)
...|+..|++++. ..|....+|.++|..+.. +|+++ +|+..+++|++
T Consensus 254 ~~~a~~~y~~al~------------------~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 254 TKRVMFAYEQCLL------------------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 3578899999999 888999999999999986 79987 99999999997
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q 019054 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKK 343 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~ 343 (347)
+.|++..+|+.+|.++...|++++|...|++++++.|.++ .++..+..+..
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR 367 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999886 46666665543
No 233
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.42 E-value=2.8e-06 Score=66.75 Aligned_cols=94 Identities=21% Similarity=0.074 Sum_probs=81.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHH
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~ 303 (347)
-.+++++|+.+|+++.+ .. ...+. +|.+|...+..++|+.++++|.+. .++.++++
T Consensus 7 ~~~d~~~A~~~~~~aa~------------------~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~ 62 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACE------------------LN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRF 62 (138)
T ss_dssp HHHHHHHHHHHHHHHHH------------------TT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred CccCHHHHHHHHHHHHc------------------CC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHH
Confidence 35799999999999987 32 23344 999999999999999999999987 68999999
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 304 QGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 304 ~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
+|.+|.. .+++++|+.+|++|.+. .++.+...|+.+..
T Consensus 63 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 63 LGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQY 104 (138)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 9999999 89999999999999987 67888888887754
No 234
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.41 E-value=1.3e-06 Score=82.94 Aligned_cols=105 Identities=14% Similarity=0.032 Sum_probs=57.9
Q ss_pred HHHHHcCccccchh---hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc----CChHHHHH
Q 019054 213 DSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----GDLKGALL 285 (347)
Q Consensus 213 ~~~~~~g~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~~~~~A~~ 285 (347)
.++..+|..+.+.| ++++|+.+|+++++ ..+.....++++|.+|... +++++|+.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~------------------~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVS------------------RGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 36778888888888 99999999999987 3333333334444444333 34444444
Q ss_pred HHHHHhhcCCCChhHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 286 DTEFAMRDGDDNVKALFRQGQA-Y--MALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 286 ~~~~al~~~p~~~~a~~~~g~~-~--~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
+++++. |.++.+++++|.+ | ...+++++|+.+|+++.+. .++.+...|+.
T Consensus 239 ~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~ 291 (452)
T 3e4b_A 239 LLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK 291 (452)
T ss_dssp HHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 444444 4444444444444 2 2344444444444444432 24444444433
No 235
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.40 E-value=1.9e-06 Score=78.53 Aligned_cols=119 Identities=11% Similarity=0.068 Sum_probs=88.3
Q ss_pred HHHHcCcccc---chhhHHHHHHHHHHHHHHhhhc--------------cccCCCChhh------------hhhHHhhHH
Q 019054 214 SIKVFGNEHY---KKQDYKMALRKYRKALRYLDIC--------------WEKEGIDEGK------------SSSLRKTKS 264 (347)
Q Consensus 214 ~~~~~g~~~~---~~g~y~~A~~~y~~al~~~~~~--------------~~~~~~~~~~------------~~~~~~~~~ 264 (347)
.++-.|..++ ...++.+|+.+|++|+++-+.. .......... .....+..+
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a 277 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS 277 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence 3344444443 3567899999999999865520 0011111100 113445666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 333 (347)
.++.-+|.++...|++++|+..+++|+.++| ++.+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 7777788888889999999999999999997 5788999999999999999999999999999998764
No 236
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.36 E-value=3.5e-06 Score=80.42 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=64.6
Q ss_pred hHHHHHHcCccccc----hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH----cCChHH
Q 019054 211 AVDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKG 282 (347)
Q Consensus 211 ~a~~~~~~g~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~ 282 (347)
.+.++..+|..++. .+++++|+.+|+++++. ..+.+++++|.+|.. .+++++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--------------------GYTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 46677778887777 78888888888888761 234455555555555 555555
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 019054 283 ALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (347)
Q Consensus 283 A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (347)
|+.++++|++. .++.+++.+|.+|.. .+++++|+..|+++.+. .++.+...|+.+
T Consensus 98 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 156 (490)
T 2xm6_A 98 AVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDA 156 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 55555555543 345555555555555 55555555555555543 344444444443
No 237
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=1.8e-06 Score=68.56 Aligned_cols=79 Identities=10% Similarity=0.010 Sum_probs=68.5
Q ss_pred hHHHHHHcCccccchh---hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHH-h-hHHHHHHHHHHHHHHcCChHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALL 285 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~A~~ 285 (347)
..+..++.|..+.+.+ ++++++..++..++ .+ | ...++++++|..|+++++|++|+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~------------------~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3567888888888866 88899999999998 54 5 678999999999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHH
Q 019054 286 DTEFAMRDGDDNVKALFRQGQA 307 (347)
Q Consensus 286 ~~~~al~~~p~~~~a~~~~g~~ 307 (347)
+++++|+++|+|.+|...+-.+
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999998887665443
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.33 E-value=2.6e-06 Score=74.65 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=83.9
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh--HHHHHHHHHHHHHHc-----CChHHHHHHHHHHhhc
Q 019054 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKL-----GDLKGALLDTEFAMRD 293 (347)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l-----~~~~~A~~~~~~al~~ 293 (347)
.+-..+....|...+++|++ ++|. ...+|..+|..|.+. |+.++|..++++||++
T Consensus 172 g~~Al~~l~~A~a~lerAle------------------LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L 233 (301)
T 3u64_A 172 GSALPDTVHAAVMMLERACD------------------LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY 233 (301)
T ss_dssp TSCCHHHHHHHHHHHHHHHH------------------HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH
T ss_pred ChHHHHhHHHHHHHHHHHHH------------------hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh
Confidence 35567788999999999999 8888 667999999999996 9999999999999999
Q ss_pred CCCC-hhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCC
Q 019054 294 GDDN-VKALFRQGQAYMAL-NDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 294 ~p~~-~~a~~~~g~~~~~~-~~~~~A~~~~~~al~l~P~ 330 (347)
+|+. ..+++..|..+... +++++|.+.+++++..+|.
T Consensus 234 nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 234 CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9975 99999999999885 9999999999999999886
No 239
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.24 E-value=4.9e-06 Score=78.81 Aligned_cols=107 Identities=15% Similarity=0.021 Sum_probs=78.7
Q ss_pred hhHHHHHHcCcc-c--cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-----ChH
Q 019054 210 NAVDSIKVFGNE-H--YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK 281 (347)
Q Consensus 210 ~~a~~~~~~g~~-~--~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~ 281 (347)
..+.++..+|.. + ...+++++|+.+|+++++ ...+.+++++|.+|. .| +++
T Consensus 246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--------------------~g~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--------------------ADQPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHH-cCCCCCCCHH
Confidence 345667777776 3 467788888888888865 235677888888887 44 888
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 282 GALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+|+.++++|+ +.++.+++++|.+|.. ..++++|+.+|+++.+. .++.+...|+.+.
T Consensus 305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 305 AAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLF 364 (452)
T ss_dssp HHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 8888888888 7788888888888876 44888888888888764 4555666665553
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.23 E-value=1.7e-05 Score=61.70 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHcCCh---HHHHHHHHHHhhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 019054 262 TKSQIFTNSSACKLKLGDL---KGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~---~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 337 (347)
......+++|.|+.+-.+. .+++..++..++..|. .-.++|.+|..++.+|+|++|.++.+.+|+.+|+|.++...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3456788888898887764 5789999999998884 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 019054 338 LAVAKKKVS 346 (347)
Q Consensus 338 l~~~~~~~~ 346 (347)
...+++++.
T Consensus 117 k~~Ie~~i~ 125 (144)
T 1y8m_A 117 KSMVEDKIQ 125 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988888764
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.21 E-value=1.1e-05 Score=61.95 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHcCC---hHHHHHHHHHHhhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 263 KSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~---~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
.....+++|.|+.+-.+ ..++|..++..++.+|. .-.++|.+|.+++.+|+|++|.++.+.+++.+|+|.++....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 44677888888888765 45789999999998884 578999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 019054 339 AVAKKKVS 346 (347)
Q Consensus 339 ~~~~~~~~ 346 (347)
..+++++.
T Consensus 119 ~~Ie~ki~ 126 (134)
T 3o48_A 119 SMVEDKIQ 126 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 242
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.19 E-value=5e-06 Score=86.96 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=88.0
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+...|..++..|+|++|+..|.+|- .|..+|.|+.++|++++|++.+.+|...
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~--------------------------ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS--------------------------NFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh--------------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 46679999999999999999998873 4888999999999999999999988554
Q ss_pred CC-------------------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 294 GD-------------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 294 ~p-------------------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
++ .++..+..++..|..+|.|++|+..+++++.++|.+..+..+|..+..+
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 43 1344566778889999999999999999999999999988888776543
No 243
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.18 E-value=4.4e-06 Score=78.07 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=61.5
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+...|..++..|.|++|+.+|.++- .|.++|.|+.++|+|++|++.+.+|.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~--------------------------n~~~LA~~L~~Lg~yq~AVea~~KA~-- 175 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVS--------------------------NFGRLASTLVHLGEYQAAVDGARKAN-- 175 (449)
T ss_dssp -------------CTTTHHHHHHHTT--------------------------CHHHHHHHHHTTTCHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh--------------------------hHHHHHHHHHHhccHHHHHHHHHHcC--
Confidence 45666666666666666666666441 25555666666666666666655552
Q ss_pred CC---------------------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 294 GD---------------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 294 ~p---------------------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+| .++.-+..+...|...|++++|+..+++++.+++.+..+..+|+.+..+
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 11 1122233455789999999999999999999999999999998877543
No 244
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.1e-05 Score=74.96 Aligned_cols=120 Identities=11% Similarity=0.013 Sum_probs=89.5
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc---------------cCCCChhhh-------------hhHHhh
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------------KEGIDEGKS-------------SSLRKT 262 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~---------------~~~~~~~~~-------------~~~~~~ 262 (347)
...++..+|..+++.|+|++|++.|.+++.+...... ...-..+.. ......
T Consensus 54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 4567889999999999999999999999886653210 000011110 011223
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
...++.++|.+|..+|+|.+|+..+++++.. .+....++..+|.+|..+|+|++|...|++++.+.+.
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 4567889999999999999999999998754 2333678999999999999999999999999999654
No 245
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=7.5e-06 Score=76.20 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=81.9
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
+.....+|..++..|+|.+|+..+.+++...... ...+....++.+++.+|..+|+|++|...+++++
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKL------------DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS------------SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc------------ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4456778888888888999988888888743211 2346678899999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.+.+.........+..+...|.+..+...|.+|...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 203 TAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 887655555566778888888887777778777754
No 246
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.02 E-value=6.2e-06 Score=60.14 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=60.8
Q ss_pred hHHHHHHcCccccchhh---HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQD---YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~---y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
.+..+...|..++-.++ .++|...++++|+ .+|.+..++..+|..+++.|+|++|+.++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~------------------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ------------------LEPYNEAALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH------------------HCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34556667777754444 7999999999999 99999999999999999999999999999
Q ss_pred HHHhhcCCCCh
Q 019054 288 EFAMRDGDDNV 298 (347)
Q Consensus 288 ~~al~~~p~~~ 298 (347)
+++++.+|.++
T Consensus 67 ~~~l~~~p~~~ 77 (93)
T 3bee_A 67 VLLLDSNDPNL 77 (93)
T ss_dssp HHHHTCCCTTC
T ss_pred HHHHhhCCCCc
Confidence 99999999853
No 247
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.02 E-value=1.7e-05 Score=70.88 Aligned_cols=99 Identities=13% Similarity=0.022 Sum_probs=79.7
Q ss_pred Cccccchh--hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhh--HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-
Q 019054 219 GNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRD- 293 (347)
Q Consensus 219 g~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~- 293 (347)
|.+.+..| ++++|+..|+++.. ..|. ...+++| |++++|++++|...++.+++.
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~------------------~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQ------------------TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHT------------------TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHH------------------hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 43344445 89999999998766 3332 3345555 899999999999999988876
Q ss_pred ---------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 294 ---------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 294 ---------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
+|+++.++.++..+...+|+ +|.+.++++.+++|+++-+......
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k 295 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI 295 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH
Confidence 58899999999999999998 8999999999999999988765543
No 248
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.98 E-value=4.1e-05 Score=68.35 Aligned_cols=126 Identities=7% Similarity=0.028 Sum_probs=83.3
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhh-------------hccccCCCChhhh-----hhHHhh----HHHHHHHHH
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLD-------------ICWEKEGIDEGKS-----SSLRKT----KSQIFTNSS 271 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~-------------~~~~~~~~~~~~~-----~~~~~~----~~~~~~nla 271 (347)
.+...|.++...|++++|++.+.++|..-+ -.....+.+.... ...+|. .-.+..+++
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence 345777788888888888888888744210 0011122211111 112331 224445555
Q ss_pred HH--HHHcC--ChHHHHHHHHHHhhcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh----------CCCCHHHH
Q 019054 272 AC--KLKLG--DLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKL----------EPNDGGIK 335 (347)
Q Consensus 272 ~~--~~~l~--~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l----------~P~~~~~~ 335 (347)
.. .+..| ++++|...|+++....|+ +...+++ +++.+|++++|.+.+++++++ +|+|+...
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 44 66666 999999999999988887 3445555 899999999999999988887 48899988
Q ss_pred HHHHHHH
Q 019054 336 KELAVAK 342 (347)
Q Consensus 336 ~~l~~~~ 342 (347)
.++..+-
T Consensus 259 aN~i~l~ 265 (310)
T 3mv2_B 259 ANQITLA 265 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765443
No 249
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.97 E-value=5.5e-05 Score=79.30 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=85.5
Q ss_pred HHcCccccchhhHHHHHHHHHHHHHHhhhcccc----CCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEK----EGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 216 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
...|..+...|+|++|+..|+++-.....+... ...+.............+|.++|.++...|++++|+..|.+|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 446889999999999999999886543321111 111111111123456789999999999999999999999886
Q ss_pred hcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 292 ~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
+++.+|++.|.++..+|+|++|++.|+.|.+..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 88999999999999999999999999999998854
No 250
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.93 E-value=1.2e-05 Score=75.68 Aligned_cols=91 Identities=9% Similarity=0.046 Sum_probs=73.8
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+.++|..+..+|+|++|+.+|+++|......... ..|..+..++|+|.+|..+|++++|+..+++
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~----------~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG----------SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC----------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 357788999999999999999999999999976654332 5678889999999999999999999999999
Q ss_pred Hhhc-----CCCC---hhHHHHHHHHHHh
Q 019054 290 AMRD-----GDDN---VKALFRQGQAYMA 310 (347)
Q Consensus 290 al~~-----~p~~---~~a~~~~g~~~~~ 310 (347)
|+++ .|++ .+.+.+++.+...
T Consensus 397 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 397 AFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9965 4555 3455556666544
No 251
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.92 E-value=1.3e-05 Score=75.44 Aligned_cols=74 Identities=9% Similarity=-0.006 Sum_probs=64.6
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
..+..+.++|.+|..+|+|++|+.+|+++|.+....... ..|..+..++|+|.+|..+|+|++|+..+++
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV----------YSLNVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC----------CChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 357778999999999999999999999999976654322 5678888999999999999999999999999
Q ss_pred Hhhc
Q 019054 290 AMRD 293 (347)
Q Consensus 290 al~~ 293 (347)
|+++
T Consensus 408 Al~i 411 (433)
T 3qww_A 408 AIAI 411 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 252
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.87 E-value=9.3e-05 Score=64.90 Aligned_cols=114 Identities=16% Similarity=0.054 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHhhhccccC---------CCC----hhhhhhHHhhHHHHHHHHHHHHHH---c--C------ChHH
Q 019054 227 DYKMALRKYRKALRYLDICWEKE---------GID----EGKSSSLRKTKSQIFTNSSACKLK---L--G------DLKG 282 (347)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~nla~~~~~---l--~------~~~~ 282 (347)
++..|...|.++.++........ ..+ .+......+..+.+++-.|..... + + ....
T Consensus 102 ~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~ 181 (301)
T 3u64_A 102 AYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHA 181 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHH
Confidence 56778888888887765432211 111 111234456667777777766644 2 2 2578
Q ss_pred HHHHHHHHhhcCCC--ChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHH
Q 019054 283 ALLDTEFAMRDGDD--NVKALFRQGQAYMAL-----NDVDAAVESFEKALKLEPND-GGIKKELAV 340 (347)
Q Consensus 283 A~~~~~~al~~~p~--~~~a~~~~g~~~~~~-----~~~~~A~~~~~~al~l~P~~-~~~~~~l~~ 340 (347)
|...+++|++++|+ +..+|..+|..|... |+.++|.+.|++|++++|+. ..+....+.
T Consensus 182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~ 247 (301)
T 3u64_A 182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 89999999999999 677999999999996 99999999999999999974 665555444
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.82 E-value=7.6e-05 Score=59.63 Aligned_cols=118 Identities=9% Similarity=0.026 Sum_probs=83.7
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+++....++..+.|+.|+..+..++.+.+.- .+ .-.......++..+|.+++..++|.+|...|++||.+.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~-----~~----~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN-----PE----LFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-----TT----SSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC-----cc----cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4556667788899999999999988843210 00 00122445688999999999999999999999997432
Q ss_pred ------C-------------------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 295 ------D-------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 295 ------p-------------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
+ ...+..|+++.||..++++++|+..++..-. .-..+.+...|+++.
T Consensus 94 k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 94 KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp HCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1 1136889999999999999999988764211 113556666666553
No 254
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.60 E-value=0.00022 Score=54.45 Aligned_cols=78 Identities=9% Similarity=-0.030 Sum_probs=59.7
Q ss_pred HHHHHHcCccccchhhH---HHHHHHHHHHHHHhhhccccCCCChhhhhhHH-h-hHHHHHHHHHHHHHHcCChHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDY---KMALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALLD 286 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~A~~~ 286 (347)
.+..++.|..+.+..+- ..++..++..++ .. | ..-.+++.+|..++++|+|.+|+.+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------------------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------------------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44556666666654443 447777777766 22 3 5678899999999999999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHH
Q 019054 287 TEFAMRDGDDNVKALFRQGQA 307 (347)
Q Consensus 287 ~~~al~~~p~~~~a~~~~g~~ 307 (347)
++.+|+++|+|.+|.-.+..+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 999999999998887665443
No 255
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.59 E-value=6.3e-05 Score=70.30 Aligned_cols=113 Identities=13% Similarity=0.049 Sum_probs=42.2
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc----------cCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~ 281 (347)
...+...+..+...|+|++|+.++..+++..+.... ..+..+.+ .-.......+|.++|.++...|+|+
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e-~f~~~pn~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELE-EFINGPNNAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp ------------------------------------------------CHHHHT-TTTTCC----------------CTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHH-HHHcCCcHHHHHHHHHHHHHcCCHH
Confidence 345677777888899999999988888874321100 00001111 1111223358999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 282 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
+|+.+|+++ ..|.++|.++..+|+|++|++.|+++ .++..++.+
T Consensus 140 eA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v 183 (449)
T 1b89_A 140 AAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEV 183 (449)
T ss_dssp THHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHH
T ss_pred HHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHH
Confidence 999999977 58899999999999999999999999 355555543
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.43 E-value=0.00084 Score=51.45 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=59.8
Q ss_pred HHHHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHh-hHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 212 a~~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
++..++.|..+.+ ..+...++..++..++ ..+ ..-.+++.+|..+.++|+|++|+.++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~------------------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH------------------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445555555543 3456677777777776 334 56788999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHH
Q 019054 288 EFAMRDGDDNVKALFRQGQA 307 (347)
Q Consensus 288 ~~al~~~p~~~~a~~~~g~~ 307 (347)
+.+|+++|+|.+|.-.+..+
T Consensus 102 d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 102 DTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHhhCCCCHHHHHHHHHH
Confidence 99999999998887665544
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.36 E-value=0.0019 Score=59.72 Aligned_cols=113 Identities=14% Similarity=0.045 Sum_probs=88.6
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhc--ccc-CCCC-hhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDIC--WEK-EGID-EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~--~~~-~~~~-~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
+...|......++...|...+.+|+.++.-- ... ...+ ......+......+...++.++..+|++.+|+..+..+
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444455678999999999999976421 111 1111 12234567777788889999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 291 l~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+..+|-+..+|..+-.+|...|+..+|++.|+++.+.
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987653
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.35 E-value=0.00027 Score=56.46 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=66.8
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCC-------ChhhhhhHHhhHHHHHHHHHHHHHHcCChHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI-------DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (347)
.++.+...|+.+|..++|..|...|++||.+-+.+...... +.-......+...++.+.+|.||.+++++++|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 56788999999999999999999999999876643222110 00000001123457889999999999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHH
Q 019054 284 LLDTEFAMRDGDDNVKALFRQGQAY 308 (347)
Q Consensus 284 ~~~~~~al~~~p~~~~a~~~~g~~~ 308 (347)
+..++.+-. .-..++....+|..|
T Consensus 142 i~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 998755432 235678888787765
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.23 E-value=0.0015 Score=50.64 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=57.8
Q ss_pred HHHHHHcCccccc---hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHh-hHHHHHHHHHHHHHHcCChHHHHHHH
Q 019054 212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDT 287 (347)
Q Consensus 212 a~~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~A~~~~ 287 (347)
.+..++.|..+.+ ..+-.+++..++..++ ..| ..-.+++.+|..+.++|+|.+|+.++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~------------------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYV 100 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH------------------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445555555544 3345567777777666 233 46678999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHH
Q 019054 288 EFAMRDGDDNVKALFRQGQA 307 (347)
Q Consensus 288 ~~al~~~p~~~~a~~~~g~~ 307 (347)
+.+|+++|+|.+|.-.+..+
T Consensus 101 d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 101 DTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHH
Confidence 99999999998876655443
No 260
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.20 E-value=0.017 Score=45.15 Aligned_cols=111 Identities=10% Similarity=-0.003 Sum_probs=88.0
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+-..|+-+.. +-.+.-++.|++|+..++-. . .......+.+|.+.|.. ..+++.++|.+.|+.++.+
T Consensus 22 llE~~g~p~~d-~~l~rlrd~YerAia~~Pp~---------k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 22 KLEKNSVPLSD-ALLNKLIGRYSQAIEALPPD---------K-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp HHHHHTCSCCH-HHHHHHHHHHHHHHHHSCGG---------G-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred HHHHcCCCchh-hHHHHHHHHHHHHHHcCCcc---------c-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 33333655544 55578889999999854321 1 23556677888888855 6789999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 336 (347)
....++.|...|+--..+|+...|.+.+.+|+.+.|...+...
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 8888999999999999999999999999999999998776544
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0062 Score=60.72 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324 (347)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 324 (347)
+....++.--+.-++..|+|+-|+..+++|+...|+...+|++++.+|..+|+|+.|+-.+..+
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3334455556777788999999999999999999999999999999999999999999776655
No 262
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.73 E-value=0.0055 Score=60.81 Aligned_cols=112 Identities=12% Similarity=0.090 Sum_probs=73.9
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHhhc
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEFAMRD 293 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A~~~~~~al~~ 293 (347)
+...++...+.+..+.|...|.+|+... .+....+|...|....+.++ ++.|...|+.+++.
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~-----------------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLK-----------------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTG-----------------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4444455556778889999999998721 22234455555666555543 77888888888877
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHH
Q 019054 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKELAVAKK 343 (347)
Q Consensus 294 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~---~~~~~~~l~~~~~ 343 (347)
.|+++..+...+......|+.+.|...|++|++..|. ...++......+.
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 7777777767777777777888888888888877763 3344444444443
No 263
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.69 E-value=0.012 Score=58.47 Aligned_cols=127 Identities=9% Similarity=0.009 Sum_probs=87.2
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccc----cCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWE----KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+....+.|+++.|...|++++..+..... ..+...+...........+|...+....+.+..+.|...+.+|++
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445567777777778777764321100 000011111112223556788888888899999999999999998
Q ss_pred c-CCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 293 D-GDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 293 ~-~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
. .+...+.|...|..-...+ +++.|...|+++++..|+++.++......+.
T Consensus 463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 8 5556788887787777765 4999999999999999999998766555443
No 264
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.48 E-value=0.0042 Score=56.55 Aligned_cols=67 Identities=7% Similarity=-0.135 Sum_probs=57.1
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+..+|..++..|++++|+..+++|+. +++. ..+|..+|.++...|++++|++.+++|+.
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~------------------Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGID------------------LEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------cCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444566667778999999999999999 6653 56788899999999999999999999999
Q ss_pred cCCCCh
Q 019054 293 DGDDNV 298 (347)
Q Consensus 293 ~~p~~~ 298 (347)
++|...
T Consensus 339 L~P~~~ 344 (372)
T 3ly7_A 339 LRPGAN 344 (372)
T ss_dssp HSCSHH
T ss_pred cCCCcC
Confidence 999764
No 265
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.98 E-value=0.047 Score=51.89 Aligned_cols=81 Identities=9% Similarity=-0.088 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
..++..+|........+..|..+|.+|+.+.|++..+|..+|.+....++.-+|+-.|-+++......+.+..+|..+.+
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999988778888888887765
Q ss_pred H
Q 019054 344 K 344 (347)
Q Consensus 344 ~ 344 (347)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.84 E-value=0.036 Score=50.98 Aligned_cols=100 Identities=17% Similarity=0.009 Sum_probs=80.3
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-- 294 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~-- 294 (347)
.+|..|+..|+|.+|+..+.+.++.+... + .......++.....+|..++++.++...+++|....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~------d------d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKL------D------DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTS------S------CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcc------c------cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 68899999999999999999999855432 1 135677889999999999999999999999986442
Q ss_pred --C-C--ChhHHHHHHHHHH-hcCCHHHHHHHHHHHHhhC
Q 019054 295 --D-D--NVKALFRQGQAYM-ALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 295 --p-~--~~~a~~~~g~~~~-~~~~~~~A~~~~~~al~l~ 328 (347)
+ . .+.....-|.++. ..++|..|..+|-++++-.
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 2 1 2455666799999 8999999999999987543
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.03 E-value=0.13 Score=44.32 Aligned_cols=67 Identities=19% Similarity=0.068 Sum_probs=59.9
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 019054 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (347)
Q Consensus 273 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (347)
-.++.++.++|+..+...++.+|.+++.-..+-+.+.-.|+|+.|..-++.+.+++|........+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999998766554433
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.038 Score=51.66 Aligned_cols=101 Identities=12% Similarity=-0.026 Sum_probs=79.3
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
.+..+|..+++.|++++|++.|.++..+.. .......++.+...+++..++|..+..++.+|-.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---------------~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAI---------------STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---------------CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356788999999999999999999887432 22356678889999999999999999999998654
Q ss_pred CC--CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 294 GD--DN----VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 294 ~p--~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
.. .+ .+.....|.++...++|.+|...|..++.-..
T Consensus 198 ~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 198 IEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 21 12 24455668888899999999999988876543
No 269
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.66 E-value=0.2 Score=47.52 Aligned_cols=126 Identities=9% Similarity=-0.063 Sum_probs=85.9
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc-------cCCCChhhhhh----------------HHhhHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-------KEGIDEGKSSS----------------LRKTKSQIFT 268 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~----------------~~~~~~~~~~ 268 (347)
...+...+..+...|+.+.|...|++|+.. +.... ...... .... .......+|.
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEA-VYGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTH-HHHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhH-HHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 344566666777788999999999999986 43110 000000 0000 1122346677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 019054 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAV 340 (347)
Q Consensus 269 nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (347)
..+....+.+..+.|...+.+| ...+.....|...|..-...+ +.+.|...|+++++..|+++..+.....
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 8888887888999999999999 443345667766676666666 6999999999999999998876544433
No 270
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.37 E-value=0.3 Score=38.99 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHh--hcC---------------CCChh-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAM--RDG---------------DDNVK-ALFRQGQAYMALNDVDAAVESFEKAL 325 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al--~~~---------------p~~~~-a~~~~g~~~~~~~~~~~A~~~~~~al 325 (347)
+...+--+.||.++++|.+|+...+..| .++ |.+-+ .+..+|....+.|+-+||+..|....
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 3445567899999999999999999998 232 33333 34557999999999999999999999
Q ss_pred hhCCCCHHHHH
Q 019054 326 KLEPNDGGIKK 336 (347)
Q Consensus 326 ~l~P~~~~~~~ 336 (347)
..+|--+.+.+
T Consensus 142 ~~~~lf~~vEn 152 (242)
T 3kae_A 142 GKSFLFSPVEN 152 (242)
T ss_dssp HHCCCHHHHHH
T ss_pred CCccccchHHH
Confidence 99886555543
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.07 E-value=0.31 Score=41.96 Aligned_cols=92 Identities=12% Similarity=0.036 Sum_probs=72.8
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhH
Q 019054 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (347)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a 300 (347)
.+++.|+.++|++.....++ ..|.+......+-..+.-.|+|++|...++.+.+++|.....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR------------------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 46788999999999999999 889999999999999999999999999999999999987432
Q ss_pred --HHH---------------------------------HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 019054 301 --LFR---------------------------------QGQAYMALNDVDAAVESFEKALKLEPN 330 (347)
Q Consensus 301 --~~~---------------------------------~g~~~~~~~~~~~A~~~~~~al~l~P~ 330 (347)
.|+ .+......|+.++|.+.-.+|++..|.
T Consensus 68 a~~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 68 ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 222 223344456777777777777776654
No 272
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.70 E-value=0.29 Score=46.49 Aligned_cols=106 Identities=8% Similarity=-0.053 Sum_probs=75.0
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHhh
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMR 292 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~ 292 (347)
.+...+....+.++.+.|...|.+| + ..+....+|...|......+ +++.|...++.+++
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~------------------~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-G------------------NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-T------------------TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-h------------------CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 3444455555667788899999888 4 11112345666676666666 69999999999999
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 019054 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (347)
..|+++..+...+......|+.+.|...|+++ +....++......+
T Consensus 349 ~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE 394 (493)
T 2uy1_A 349 KHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYE 394 (493)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 99998888777788788899999999888886 23444444444433
No 273
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.23 E-value=0.081 Score=52.77 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=53.1
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
-+...+..+..+|+|+-|+..-++|+. ..|.....|..||.||.++|+|+.|+-.++-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~------------------~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTE------------------LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHh------------------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 456678888899999999999999999 88889999999999999999999999876665
No 274
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=92.59 E-value=0.65 Score=44.11 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=76.9
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..+..+-..+.+.|++++|.+.|.+..+. ...| +...|..+-.+|.+.|+.++|...+++..+
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----------------g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAF----------------GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34555666788899999999999877651 0222 345677788889999999999999999876
Q ss_pred cC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 293 DG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 293 ~~-p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.. ..+...|..+-.+|...|+.++|.+.|++..+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 53 236677888889999999999999999998664
No 275
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=92.46 E-value=0.71 Score=36.82 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=67.8
Q ss_pred EEEEEEECCeeee-eEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCce--EEeccCCCCCCCC
Q 019054 6 CFLDISIGVELEG-RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFM--IQGGDISAGDGTG 82 (347)
Q Consensus 6 v~~~~~~~~~~~G-~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~--iq~G~~~~~~~~~ 82 (347)
-|+.|++... | .++.+|..+.||+||+.|.++-= |.+-.+|-..-|.- +--|++..
T Consensus 22 r~i~itl~~~--g~~~~A~Lldd~APkTcaA~~~~LP--------------~~~~viHarwSGeeVy~~lp~f~~----- 80 (188)
T 3kop_A 22 RYINITLEKR--GVTCKALLLDDVAPRTSKAVWDALP--------------QSSQVFHGKYARNEIYNLVPAFAP----- 80 (188)
T ss_dssp CEEEEEETTT--TEEEEEEECTTTSHHHHHHHHHHCC--------------EEEECEECSSSSSEEEEEEECCSS-----
T ss_pred eEEEEEEecC--CeEEEEEEccccChHHHHHHHHhCC--------------CCcceEEEEEecceEEEECCcccc-----
Confidence 4778887533 4 47889999999999999999641 44445554444432 22333220
Q ss_pred CCcccCCCCCCCccccCCCCccEEEeeeC----------C--C------CCCCceEEEecCCC--------CCCCCCCce
Q 019054 83 GESIYGLKFEDENFELKHERKGMLSMANA----------G--P------NTNGSQFFITTTRT--------SHLDGKHVV 136 (347)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~----------~--~------~~~~sqF~i~~~~~--------~~l~~~~~v 136 (347)
...+.||... +..+|-|.+-.- | + .+....+.|..+.. .++-| .+
T Consensus 81 ------~~~g~EN~T~-~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpG--N~ 151 (188)
T 3kop_A 81 ------KEPGAENTTV-TPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPG--NV 151 (188)
T ss_dssp ------SCCCSCSEES-SCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCE--EE
T ss_pred ------cCCCcCCCCC-CCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecC--cE
Confidence 1134566543 344677776311 1 1 11124566655543 24444 68
Q ss_pred eeEEEeChHHHHHHh
Q 019054 137 FGRVIKGMGVVRSIE 151 (347)
Q Consensus 137 fG~v~~g~~vl~~I~ 151 (347)
|++|++|+|-+.++-
T Consensus 152 F~TIveGle~la~~c 166 (188)
T 3kop_A 152 FATIVEGLDEMAAAC 166 (188)
T ss_dssp EEEEEESHHHHHHHH
T ss_pred EEEEecCHHHHHHHH
Confidence 999999998876553
No 276
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.81 E-value=0.32 Score=46.14 Aligned_cols=80 Identities=14% Similarity=0.033 Sum_probs=69.7
Q ss_pred HHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 213 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
.-+..+|....-+..+..|..+|.+|+. ..|.....|+.+|.++...++.-+|+-+|.+++.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~------------------~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQ------------------LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHH------------------hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 4567788888778889999999999999 8999999999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHh
Q 019054 293 DGDDNVKALFRQGQAYMA 310 (347)
Q Consensus 293 ~~p~~~~a~~~~g~~~~~ 310 (347)
.....+.|.-++...+..
T Consensus 215 ~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 215 VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp SSBCCHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHH
Confidence 776677777777766654
No 277
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.70 E-value=1.4 Score=41.11 Aligned_cols=105 Identities=7% Similarity=-0.080 Sum_probs=79.1
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.+.....++..++..|+|.+|.........-.... ........++......|...++|.+|...++++
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~------------~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGS------------MEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45556778889999999999999988876511100 123456778888899999999999999999887
Q ss_pred hh---cCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 291 MR---DGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 291 l~---~~p~~----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.. -.+.. ...+...|..+...++|.+|..+|..+++.
T Consensus 204 ~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 204 LKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 42 12222 345666799999999999999999999875
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=90.43 E-value=4.1 Score=35.93 Aligned_cols=119 Identities=14% Similarity=0.065 Sum_probs=66.0
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc--CCh--HHHHHHHHHH
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL--KGALLDTEFA 290 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~--~~A~~~~~~a 290 (347)
....|-.++..|+|++|+..|+..|..+.-.....+.+.++ .......+..-+-.+-+++ +.. +...+.++-|
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e---~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA 193 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKL---AHKILETAREYILGLSIELERRSLKEGNTVRMLELA 193 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHH---HHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 45578889999999999999999998766543332222222 2222222211111111111 110 1111122222
Q ss_pred -----hhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 019054 291 -----MRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (347)
Q Consensus 291 -----l~~~p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 336 (347)
..+.|.. .-++..--...++.++|..|...-++.+++.|..+.+.+
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q 245 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ 245 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2344433 234444444566789999999999999999997554433
No 279
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=90.38 E-value=4.7 Score=38.10 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=68.7
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCChhHH
Q 019054 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-DDNVKAL 301 (347)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~-p~~~~a~ 301 (347)
.+.+..+.|.+.|.+-.+. ...| +...|..+-.+|.+.|++++|+..+++..+.. ..+...|
T Consensus 81 ~~~~~l~~A~~lf~~M~~~----------------G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVD----------------KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHT----------------TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred hhcchHHHHHHHHHHHHHh----------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 3456778888888766541 0222 34568888899999999999999999987653 2367788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 302 FRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 302 ~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
..+-.+|...|+.++|.+.|++..+.
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88889999999999999999998765
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.27 E-value=0.68 Score=43.84 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--CC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD--DN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p--~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 332 (347)
..+.+++.+-..|+..+.|+.|....+++.-... .+ ...+|..|.++...++|.+|.+++..|++..|.+.
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 3456777888999999999999999999853221 12 45678889999999999999999999999998754
No 281
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.24 E-value=3.8 Score=37.35 Aligned_cols=81 Identities=16% Similarity=0.054 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--------C--------------hhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--------N--------------VKALFRQGQAYMALNDVDAAVESFE 322 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~--------~--------------~~a~~~~g~~~~~~~~~~~A~~~~~ 322 (347)
..+...|......++.+.|+..+.+|+.+... . ..++..++.++...|++++|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444455555678999999999999977421 1 1355667888999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHh
Q 019054 323 KALKLEPNDGGIKKELAVAKKKV 345 (347)
Q Consensus 323 ~al~l~P~~~~~~~~l~~~~~~~ 345 (347)
+++..+|-+..++..|-.+....
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~ 218 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLS 218 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999888877766544
No 282
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=90.09 E-value=4.2 Score=35.87 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=65.6
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHc--CCh-----HHHHHHH
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL-----KGALLDT 287 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~-----~~A~~~~ 287 (347)
....|-.++..|++++|+..|+..|..+.-.... +.++..........+..-+-.+-+++ ++. +.....+
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~---~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~l 181 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVD---NKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRIC 181 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeec---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHH
Confidence 4567888899999999999999999866543222 22222223322222222221111222 221 2323333
Q ss_pred HHH-----hhcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054 288 EFA-----MRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 288 ~~a-----l~~~p~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 332 (347)
+-| ..+.|.+ .-++..--...++.++|..|...-++.+++.|..+
T Consensus 182 ELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 182 EMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 333 2444444 23444444456678999999999999999988533
No 283
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=89.61 E-value=0.85 Score=31.74 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=35.0
Q ss_pred HHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (347)
Q Consensus 206 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (347)
....+.|..+...|...-+.|+|++|+.+|.+|++++..+.
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999999999999999999999876653
No 284
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=88.80 E-value=0.7 Score=32.15 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=33.5
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (347)
..+.|..+...|...-+.|+|++|+.+|..||+++..+.
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 456788888889899999999999999999999876553
No 285
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.45 E-value=1 Score=44.89 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
..|.++|..+++.++++.|+..|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45666777777777777776666654
No 286
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.88 E-value=1.9 Score=34.68 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=17.8
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~ 240 (347)
...++.+|......|+++-|.++|.++-.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 34466666666666666666666665533
No 287
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.30 E-value=0.85 Score=45.40 Aligned_cols=45 Identities=24% Similarity=0.205 Sum_probs=24.5
Q ss_pred HHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324 (347)
Q Consensus 275 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 324 (347)
+.+|++++|.+.++ ..++...|.++|..+...++++.|+++|.++
T Consensus 663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44566666655432 1134555566666666666666666665553
No 288
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=86.24 E-value=1.8 Score=32.20 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~ 247 (347)
.++.|..+...|...-+.++|++|+.+|..|++++..+..
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk 53 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVK 53 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 4557777888888888899999999999999998766533
No 289
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=85.84 E-value=2.2 Score=34.26 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=40.8
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 274 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.+++|+++.|.+.+++. ++...|.++|.+-...|+++-|.++|+++-.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 45789999999988765 57888999999999999999999998876433
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.23 E-value=3.2 Score=40.43 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=46.8
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 019054 272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 272 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 326 (347)
...++.++++.|..++...-.......+..|.+|.++..+|+.++|...|+++.+
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3455779999999999876664446688999999999999999999999999876
No 291
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=84.11 E-value=2.4 Score=30.05 Aligned_cols=39 Identities=18% Similarity=0.081 Sum_probs=32.5
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (347)
..+.|..+...|...-+.|+|++|+.+|..|++++..+.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~al 49 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVL 49 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 344677788888888899999999999999999876553
No 292
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=83.73 E-value=4.3 Score=31.73 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=57.9
Q ss_pred HHhhHHHHHHHHHHHHHHcCCh------HHHHHHHHHHhhcCCCC--------hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 019054 259 LRKTKSQIFTNSSACKLKLGDL------KGALLDTEFAMRDGDDN--------VKALFRQGQAYMALNDVDAAVESFEKA 324 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~------~~A~~~~~~al~~~p~~--------~~a~~~~g~~~~~~~~~~~A~~~~~~a 324 (347)
+.|.+.+.|.+.....-+.|+. ++-++.|++|+..-|.. +..|.+.|.- ..+++.++|.+.|+.|
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5677778888888888888998 89999999999766543 3455566644 6679999999999999
Q ss_pred HhhCCCCHHHHHHHH
Q 019054 325 LKLEPNDGGIKKELA 339 (347)
Q Consensus 325 l~l~P~~~~~~~~l~ 339 (347)
+.++..-.-++-..+
T Consensus 87 ~~~hKkFAKiwi~~A 101 (161)
T 4h7y_A 87 RANCKKFAFVHISFA 101 (161)
T ss_dssp HHHCTTBHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 988554434443333
No 293
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.24 E-value=14 Score=33.79 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=78.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhh---------------ccccCCCChhh----------hhhH-Hhh--
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI---------------CWEKEGIDEGK----------SSSL-RKT-- 262 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~---------------~~~~~~~~~~~----------~~~~-~~~-- 262 (347)
.-.+...+|..|.+.|++++-.+.......++.. .....+...+. |... ...
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999988887555444431 11111111111 1111 111
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~----~p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
...+-.++|..|+..|+|.+|+..+.+.++- +.. -.+.+..-.++|..++++..+.+.|.+|....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 2224458899999999999999988888753 211 14677778889999999999999999988763
No 294
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=81.59 E-value=2.5 Score=29.32 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=30.5
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (347)
++.|..+...|...-+.|+|++|+.+|..|++++...
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4467777778878888999999999999999977654
No 295
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.04 E-value=3.8 Score=30.21 Aligned_cols=80 Identities=10% Similarity=-0.058 Sum_probs=59.1
Q ss_pred hhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccC----CCChhhhhhHHhhHHHHHHHHHHHHHHcCC
Q 019054 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE----GIDEGKSSSLRKTKSQIFTNSSACKLKLGD 279 (347)
Q Consensus 204 ~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~nla~~~~~l~~ 279 (347)
.+....+.|-.+.+.|-..-..|+-+.|+++|.++|..+......+ ....+.|.....+......|+..+-.+++.
T Consensus 14 ~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~ 93 (116)
T 2dl1_A 14 IIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEI 93 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888777778999999999999999887644322 245667777788888888888888877765
Q ss_pred hHHH
Q 019054 280 LKGA 283 (347)
Q Consensus 280 ~~~A 283 (347)
.+..
T Consensus 94 Le~~ 97 (116)
T 2dl1_A 94 LEKG 97 (116)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 296
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.90 E-value=2.1 Score=44.97 Aligned_cols=108 Identities=12% Similarity=-0.030 Sum_probs=73.5
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhh------HHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSS------LRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
-+-+|..++..|++++|..+|.+|..-+..-...... ...... ........|..+...+.+.+.++.+++.+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV-LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSS-HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhh-hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4778999999999999999999885422110000000 000000 111233567888889999999999999999
Q ss_pred HHhhcCCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 289 FAMRDGDDN-V----KALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 289 ~al~~~p~~-~----~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
.||+..+.+ . ..|.++=..+..+++|++|...+..
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 999865433 2 2577888899999999999776643
No 297
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=79.67 E-value=18 Score=33.71 Aligned_cols=105 Identities=8% Similarity=0.010 Sum_probs=66.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhh-hhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------C
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKS-SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--------G 294 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~--------~ 294 (347)
+....++|.....++..... .....+.++. ..-.....-+.+++-.+|+++++..-|...+...-.. .
T Consensus 138 ~~~~le~~a~~i~k~F~~cl---~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~ 214 (455)
T 3t5v_B 138 SHQFLSHISSILSRLFNSIK---PPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEY 214 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHCC---CC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGS
T ss_pred chhHHHHHHHHHHHHHHHhc---ccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhC
Confidence 34556666666666655221 1111111111 1123334445667789999999999887776443221 1
Q ss_pred CC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC
Q 019054 295 DD--NVKALFRQGQAYMALNDVDAAVESFEKALKL-EPND 331 (347)
Q Consensus 295 p~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l-~P~~ 331 (347)
|. .+.-+|.+|..+...++|.+|.+++..|++. .|.+
T Consensus 215 p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 215 QLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred CccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 21 1567899999999999999999999999999 8865
No 298
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.37 E-value=3.3 Score=38.35 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHH
Q 019054 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD---NVKALFRQGQAYMALNDVDAAVESFEKALKLE--PNDGGIKKEL 338 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~~l 338 (347)
..++..+|..|.+.|++++|+..+.++...... -...++..-.++...++|..|...+.++..+- ..++..+..+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346778999999999999999999998865432 26788888899999999999999999997663 3455555554
Q ss_pred HHH
Q 019054 339 AVA 341 (347)
Q Consensus 339 ~~~ 341 (347)
..+
T Consensus 211 k~~ 213 (429)
T 4b4t_R 211 KTY 213 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 299
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=79.22 E-value=1.3 Score=31.14 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=32.7
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccc
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~ 247 (347)
+..|..+-..+..+.+.|+|++||++.++|..++.++..
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 346777788899999999999999999999998876533
No 300
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=79.07 E-value=3.2 Score=29.14 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
.+..+..+|..+++.|+|++||.+..+|.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 45556666666666677777666654443
No 301
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=79.00 E-value=15 Score=28.25 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=37.4
Q ss_pred cCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 277 l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+|+-++--..+...+.-.+-++..++.+|.||..+|+..+|.+.+.+|.+.
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344444333444444555667999999999999999999999999999875
No 302
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=77.78 E-value=2.5 Score=29.28 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=9.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 019054 267 FTNSSACKLKLGDLKGALLDTEF 289 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~ 289 (347)
+...|.-.-+.|+|++|+..|..
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~ 44 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKK 44 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 33444444444444444444333
No 303
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=76.86 E-value=2.8 Score=29.06 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
+...|.-.-+.|+|++|+..|..+
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 333444444444444444444333
No 304
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=75.84 E-value=17 Score=37.50 Aligned_cols=102 Identities=7% Similarity=-0.038 Sum_probs=76.5
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
...+..+=+.+.+.|+.++|...+....++... --..+...|+-+-..|.+.|+.++|+..+++-.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k--------------G~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK--------------RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH--------------HTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc--------------CCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 345677778899999999999999765431100 112345678888899999999999999999987
Q ss_pred hcC-CCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhh
Q 019054 292 RDG-DDNVKALFRQGQAYMALND-VDAAVESFEKALKL 327 (347)
Q Consensus 292 ~~~-p~~~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l 327 (347)
+.. ..+.-.|..+-.++...|+ .++|.+.|++..+.
T Consensus 193 ~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 643 2366677777778888887 57888999888765
No 305
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=75.63 E-value=3.8 Score=28.59 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=28.9
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (347)
.|..+...|...-+.|+|++|+.+|..|++++...
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 56667777777788999999999999999977544
No 306
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.50 E-value=35 Score=30.28 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHH
Q 019054 296 DNVKALFRQGQAYMALNDVDAAVESF 321 (347)
Q Consensus 296 ~~~~a~~~~g~~~~~~~~~~~A~~~~ 321 (347)
.++..+..+|..|...++|.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45788889999999999999998877
No 307
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=75.20 E-value=17 Score=32.94 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=67.6
Q ss_pred HhhHHHHHHcCccccch------------hhHHHHHHHHHHHHHHhhhcccc--CCC--ChhhhhhHHhhHHHHHHHHHH
Q 019054 209 MNAVDSIKVFGNEHYKK------------QDYKMALRKYRKALRYLDICWEK--EGI--DEGKSSSLRKTKSQIFTNSSA 272 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~------------g~y~~A~~~y~~al~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~nla~ 272 (347)
.+.+..++++|..+... ...+.|..+|++|..++.++... ... ..+....+.+....++..++.
T Consensus 111 fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~~~~~~~~~~~~~~Dls~~~l~~L~~l~L 190 (376)
T 3r9m_A 111 FELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQCQ 190 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTGGGCSSCCCTTSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCHHHHHHHHHHHH
Confidence 44556666666555432 24788999999999888765431 110 111122245555555555544
Q ss_pred HHHHcCChH-----------------HHHHHHHHHhhc-CCC--C-----------------hhHHHHHHHHHHhcCCHH
Q 019054 273 CKLKLGDLK-----------------GALLDTEFAMRD-GDD--N-----------------VKALFRQGQAYMALNDVD 315 (347)
Q Consensus 273 ~~~~l~~~~-----------------~A~~~~~~al~~-~p~--~-----------------~~a~~~~g~~~~~~~~~~ 315 (347)
+..+.--+. ++..+|++|... ... . +.++|+.|..+...+++-
T Consensus 191 AQAQE~~~~Kai~~~~k~~liAKLa~q~~~~Y~~a~~~l~~~~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~k~G 270 (376)
T 3r9m_A 191 AEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCG 270 (376)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 433221122 223355555432 110 0 457888888888899999
Q ss_pred HHHHHHHHHHhh
Q 019054 316 AAVESFEKALKL 327 (347)
Q Consensus 316 ~A~~~~~~al~l 327 (347)
+|+..++.|.+.
T Consensus 271 eaIa~L~~A~~~ 282 (376)
T 3r9m_A 271 EAIRSLQEAEKL 282 (376)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 308
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.65 E-value=10 Score=25.45 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=16.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 019054 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (347)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 335 (347)
+|..+...|++++|...|-+|+...|+=.++.
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 45555555555555555555555555443333
No 309
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=73.72 E-value=16 Score=34.11 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 019054 228 YKMALRKYRKALRYLDIC 245 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~ 245 (347)
-++|+++|++|+.+++.+
T Consensus 448 A~kAi~~Y~~Ai~~L~k~ 465 (526)
T 2wb7_A 448 AQGAIDEYKAAINDLQKA 465 (526)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345677777777765544
No 310
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.24 E-value=51 Score=28.86 Aligned_cols=27 Identities=15% Similarity=-0.032 Sum_probs=22.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054 296 DNVKALFRQGQAYMALNDVDAAVESFE 322 (347)
Q Consensus 296 ~~~~a~~~~g~~~~~~~~~~~A~~~~~ 322 (347)
.++..|..+|..|..-+++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 356788889999999999999988774
No 311
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.23 E-value=43 Score=27.30 Aligned_cols=87 Identities=7% Similarity=-0.099 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChhHHHHHHHHHHh
Q 019054 233 RKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--DGDDNVKALFRQGQAYMA 310 (347)
Q Consensus 233 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~ 310 (347)
..++++++.+... +.-..++....+|...+.++ ..++..++...|..... +.-..+..|-..|..+..
T Consensus 58 ~lLErc~~~F~~~---------~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~ 127 (202)
T 3esl_A 58 STMERCLIYIQDM---------ETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN 127 (202)
T ss_dssp HHHHHHHHHHTTC---------GGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc---------ccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 4667777655321 22236777788888777765 22336688888877764 445667888888999999
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 019054 311 LNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 311 ~~~~~~A~~~~~~al~l~P 329 (347)
.|+|.+|.+.|++.++..-
T Consensus 128 ~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 128 AQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999763
No 312
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=69.81 E-value=3 Score=32.65 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=63.0
Q ss_pred EEEEECCeeeeeEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCcccccCCeeEEEecCceEEeccCCCCCCCCCCccc
Q 019054 8 LDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIY 87 (347)
Q Consensus 8 ~~~~~~~~~~G~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~ 87 (347)
+.+++++ ..++++|+++.||+||+-|+++-= +.++. .+- -+ -+.+ ++...
T Consensus 32 I~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~LP--------------l~~~~-~~~-g~-E~y~-~lp~~--------- 81 (153)
T 2nnz_A 32 LRIRFES---AECEVELYEEWAPETVRAIADALP--------------IKSTA-NRW-GD-EIYF-TTQVA--------- 81 (153)
T ss_dssp EEEEETT---EEEEECCCTTSCHHHHHHHHHTCS--------------EEEEE-EEE-TT-EEEE-CCSCC---------
T ss_pred EEEEECC---EEEEEEEcCCCCHHHHHHHHHhCC--------------cEEEH-Hhh-CC-cEEE-ECCCC---------
Confidence 5667765 579999999999999999999752 22221 111 11 1111 11100
Q ss_pred CCCCCCCccccCCCCccEEEeeeCCCCCCCceEEEecCCCCCCCC------CCceeeEEEeChHHHHHH
Q 019054 88 GLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG------KHVVFGRVIKGMGVVRSI 150 (347)
Q Consensus 88 ~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~------~~~vfG~v~~g~~vl~~I 150 (347)
... +|+. .....+|-|+....+. .+.|..++.|...+ .-.+||+|.+|++.+..+
T Consensus 82 -l~~-~en~-~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~ 142 (153)
T 2nnz_A 82 -VEK-EENS-KDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV 142 (153)
T ss_dssp -CCC-SSCC-BCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred -CCC-CCCC-cccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence 001 1222 2345689999886543 38888888753222 247899999998776554
No 313
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=68.60 E-value=30 Score=31.09 Aligned_cols=118 Identities=14% Similarity=0.042 Sum_probs=67.6
Q ss_pred HHhhHHHHHHcCccccch---------hhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcC
Q 019054 208 WMNAVDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~ 278 (347)
..+.+..++++|..+... ...+.|..+|++|.-++.++...-.. .....+.+....++..++.+..+.-
T Consensus 113 ~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~l~~~~~~--~~~~Dls~~~l~~L~~l~LAQAQE~ 190 (363)
T 3rau_A 113 KYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQ--AYSVDMSRQILTLNVNLMLGQAQEC 190 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCS--CSSGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 445666777777666443 35788999999999888776432111 1112245555555555544443322
Q ss_pred ChHHH-----------------HHHHHHHhhc---CC---------C-------------ChhHHHHHHHHHHhcCCHHH
Q 019054 279 DLKGA-----------------LLDTEFAMRD---GD---------D-------------NVKALFRQGQAYMALNDVDA 316 (347)
Q Consensus 279 ~~~~A-----------------~~~~~~al~~---~p---------~-------------~~~a~~~~g~~~~~~~~~~~ 316 (347)
-+.+| ..+|++|... .+ . .+.|+|+.|......+++-+
T Consensus 191 ~~~Kai~~~~k~~liAkLa~q~~~~Y~~a~~~l~~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~Ge 270 (363)
T 3rau_A 191 LLEKSMLDNRKSFLVARISAQVVDYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGE 270 (363)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHH
Confidence 22222 2344444321 01 0 13467778888888899999
Q ss_pred HHHHHHHHHhh
Q 019054 317 AVESFEKALKL 327 (347)
Q Consensus 317 A~~~~~~al~l 327 (347)
|+..++.|.+.
T Consensus 271 aIa~L~~A~~~ 281 (363)
T 3rau_A 271 RVAYFQSALDK 281 (363)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877766543
No 314
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=67.83 E-value=39 Score=30.30 Aligned_cols=79 Identities=15% Similarity=0.020 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHcCCh--HHHHHHHHHHhhc-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCC
Q 019054 264 SQIFTNSSACKLKLGDL--KGALLDTEFAMRD-----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPN 330 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~--~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l------~P~ 330 (347)
+.++.|||.+--..-.. ..++..|.+|+.. .....-.|..+|-.+++.+++.+|++.+..|-.. .-+
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~re 334 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKD 334 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCcc
Confidence 44555666555433222 2267777777643 2345677888888999999999999999887654 234
Q ss_pred CHHHHHHHHHHH
Q 019054 331 DGGIKKELAVAK 342 (347)
Q Consensus 331 ~~~~~~~l~~~~ 342 (347)
|.++.+++-++-
T Consensus 335 DeEIYKEf~eIA 346 (472)
T 3re2_A 335 DEEMYKEFHEIA 346 (472)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766553
No 315
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=67.61 E-value=6.2 Score=27.44 Aligned_cols=22 Identities=5% Similarity=0.110 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 019054 305 GQAYMALNDVDAAVESFEKALK 326 (347)
Q Consensus 305 g~~~~~~~~~~~A~~~~~~al~ 326 (347)
|.-....|+|++|+..|..+++
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3333455555555555555544
No 316
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=66.15 E-value=58 Score=29.77 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCCh--HHHHHHHHHHhhc-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCC
Q 019054 264 SQIFTNSSACKLKLGDL--KGALLDTEFAMRD-----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPN 330 (347)
Q Consensus 264 ~~~~~nla~~~~~l~~~--~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l------~P~ 330 (347)
+.++.|||.+---.-.. ..++..+++||.. .....-.|..+|-.++..++|.+|++.+..|-.. .-+
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~re 341 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRE 341 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccc
Confidence 34555555554332221 2355666666643 2345677888888899999999999999888654 345
Q ss_pred CHHHHHHHHHHH
Q 019054 331 DGGIKKELAVAK 342 (347)
Q Consensus 331 ~~~~~~~l~~~~ 342 (347)
|.++.+++..+-
T Consensus 342 DeEiYke~~eIa 353 (489)
T 4gq4_A 342 DEEIYKEFFEVA 353 (489)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 788888776553
No 317
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=64.81 E-value=12 Score=30.69 Aligned_cols=55 Identities=15% Similarity=0.015 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhH-----HHHHHHHHHhcCCHH
Q 019054 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA-----LFRQGQAYMALNDVD 315 (347)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a-----~~~~g~~~~~~~~~~ 315 (347)
...+..++-+|..++..++|.+|..++.+|++..|..... +..+-.+-+-+|+..
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456677888888888899999999999999888766433 223333344566654
No 318
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=64.54 E-value=30 Score=24.05 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHh
Q 019054 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGG----IKKELAVAKKKV 345 (347)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~----~~~~l~~~~~~~ 345 (347)
+..-|.-++..++|.+|+..|+++..+.. ++. +...+.+|++++
T Consensus 56 ~i~eak~~y~~~ny~ea~~l~~k~~n~te-n~~i~ki~~fyl~ec~kkl 103 (106)
T 2vkj_A 56 LIAEGKDLFETANYGEALVFFEKALNLSD-NEEIKKIASFYLEECRKKL 103 (106)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHcccc-CHHHHHHHHHHHHHHHHHh
Confidence 33444555566666666666666655432 222 224455555544
No 319
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=62.88 E-value=19 Score=30.16 Aligned_cols=54 Identities=15% Similarity=-0.006 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHh
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al 291 (347)
-+.|...|++|+.++..- ....+|....+..|.+..|.. +++.++|+..+.+|+
T Consensus 146 ~e~a~~aY~~A~~iA~~~----------L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTE----------LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc----------CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356788899999866421 112567777788888888876 799999999888876
No 320
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=61.10 E-value=11 Score=26.29 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=28.0
Q ss_pred hhHHHHHHcCccccchhhHHHHHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~ 240 (347)
+.++.+...|..+|+.++|.+|+..++++..
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 4678888899999999999999999999986
No 321
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=59.96 E-value=38 Score=28.13 Aligned_cols=58 Identities=9% Similarity=-0.031 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHhh
Q 019054 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMR 292 (347)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al~ 292 (347)
.|+-+.|...|+.|..++..- ....+|....+.+|.+..|.. +++.++|+..+.+|+.
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~----------L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEH----------PDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC----------GGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhh----------CCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344788999999999876532 122566667778888887775 6899999999999975
No 322
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=59.53 E-value=63 Score=29.55 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHhhc-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q 019054 283 ALLDTEFAMRD-----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPNDGGIKKELAVAK 342 (347)
Q Consensus 283 A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l------~P~~~~~~~~l~~~~ 342 (347)
++..|.+|+.. .....-.|..+|-.|++.+++.+|++.+..|-.. .-+|.++.+++-++-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 368 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVA 368 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 56666666643 2344667888888999999999999999887654 245778877766553
No 323
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=59.49 E-value=26 Score=28.57 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 332 (347)
..-+|.+|..+...++|.+|.+++..|++..|.+.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45678899999999999999999999999988654
No 324
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=59.27 E-value=13 Score=36.39 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA 316 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~ 316 (347)
......|...+..|+|..|.+.++.++..+|+|.+|...++.+|.++|.-.+
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3455667777778888888888888888888888888888888887775443
No 325
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=58.22 E-value=43 Score=33.06 Aligned_cols=119 Identities=9% Similarity=-0.023 Sum_probs=66.4
Q ss_pred HhhHHHHHHcCccccc---------hhhHHHHHHHHHHHHHHhhhccccC--CCChhhhhhHHhhHHHHHHHHHHHHHHc
Q 019054 209 MNAVDSIKVFGNEHYK---------KQDYKMALRKYRKALRYLDICWEKE--GIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~---------~g~y~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (347)
.+.+..++++|..+.. ....+.|..+|.+|..++.++...- .........+.+....++.+++.+..+.
T Consensus 124 fE~a~vLfNlaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l~LAQAQE 203 (704)
T 2xs1_A 124 YEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQE 203 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 3455556665555433 2347889999999998887653321 0011112225555566666555443322
Q ss_pred CChHH-----------------HHHHHHHHhhc---C---CCC-------------hhHHHHHHHHHHhcCCHHHHHHHH
Q 019054 278 GDLKG-----------------ALLDTEFAMRD---G---DDN-------------VKALFRQGQAYMALNDVDAAVESF 321 (347)
Q Consensus 278 ~~~~~-----------------A~~~~~~al~~---~---p~~-------------~~a~~~~g~~~~~~~~~~~A~~~~ 321 (347)
=-+.+ +..+|+.|... . |.. +.|+|..|......+++-+|+..+
T Consensus 204 ~~~~Kai~~~~k~~liAkLa~~~~~~Y~~A~~~l~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L 283 (704)
T 2xs1_A 204 VFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARL 283 (704)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHH
Confidence 22222 22234444322 1 122 346777788888889999999998
Q ss_pred HHHHhh
Q 019054 322 EKALKL 327 (347)
Q Consensus 322 ~~al~l 327 (347)
+.|..+
T Consensus 284 ~~A~~~ 289 (704)
T 2xs1_A 284 QHAAEL 289 (704)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 326
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=57.90 E-value=44 Score=30.15 Aligned_cols=119 Identities=9% Similarity=-0.015 Sum_probs=65.0
Q ss_pred HhhHHHHHHcCccccch---------hhHHHHHHHHHHHHHHhhhccccC--CCChhhhhhHHhhHHHHHHHHHHHHHHc
Q 019054 209 MNAVDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKE--GIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (347)
.+.+..++++|..+... ...+.|..+|.+|..++.++...- .........+.+....++.+++.+..+.
T Consensus 139 fE~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~AAG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l~LAQAQE 218 (380)
T 3c3r_A 139 YEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQE 218 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 34555566655554332 236889999999988887653311 0001111224555555555554443322
Q ss_pred CChHH-----------------HHHHHHHHhhc---C---CCC-------------hhHHHHHHHHHHhcCCHHHHHHHH
Q 019054 278 GDLKG-----------------ALLDTEFAMRD---G---DDN-------------VKALFRQGQAYMALNDVDAAVESF 321 (347)
Q Consensus 278 ~~~~~-----------------A~~~~~~al~~---~---p~~-------------~~a~~~~g~~~~~~~~~~~A~~~~ 321 (347)
=-+.+ +..+|++|.+. . +.. +.|+|..|......+++-+|+..+
T Consensus 219 ~~~~Kai~~~~k~~liAkLa~~~~~~Y~~A~~~l~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L 298 (380)
T 3c3r_A 219 VFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARL 298 (380)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 22222 22344444321 1 122 346777888888889999999988
Q ss_pred HHHHhh
Q 019054 322 EKALKL 327 (347)
Q Consensus 322 ~~al~l 327 (347)
+.|.+.
T Consensus 299 ~~A~~~ 304 (380)
T 3c3r_A 299 QHAAEL 304 (380)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 327
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=57.85 E-value=26 Score=29.78 Aligned_cols=54 Identities=15% Similarity=-0.006 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHh
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al 291 (347)
-+.|...|++|..++..- .....|....+.+|.+..|.. +++.++|+..+++|+
T Consensus 172 ~e~a~~aY~~A~~iA~~~----------L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTE----------LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----------CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356778899998865321 112567777788888888777 699999999888876
No 328
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=57.54 E-value=27 Score=29.71 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHhh
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMR 292 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al~ 292 (347)
-+.|...|++|+.++ .- ....+|....+.+|.+..|.. +++.++|+..+.+|+.
T Consensus 172 ~e~a~~aY~~A~~iA-~~----------L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KD----------LEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHH-TT----------SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-Hh----------CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356788899999865 21 112567777888888888887 7999999999888773
No 329
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=57.44 E-value=27 Score=29.48 Aligned_cols=54 Identities=11% Similarity=-0.020 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHh
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al 291 (347)
-+.|...|++|..++..- ....+|....+.+|.+..|.. ++++++|+..+++|+
T Consensus 147 ~~~a~~aY~~A~~iA~~~----------L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEH----------MQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----------CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356788899998865421 112567777788888888776 699999999888876
No 330
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=57.05 E-value=27 Score=29.73 Aligned_cols=54 Identities=15% Similarity=0.026 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHh
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al 291 (347)
-+.|...|++|..++..- ....+|....+.+|.+..|.. +++.++|+..+.+|+
T Consensus 151 ~e~a~~aY~~A~~iA~~~----------L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTE----------LAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----------CCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 356888899999866421 112567777888888888887 699999999988877
No 331
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=55.26 E-value=17 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.007 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 019054 268 TNSSACKLKLGDLKGALLDTEFAMRDGD 295 (347)
Q Consensus 268 ~nla~~~~~l~~~~~A~~~~~~al~~~p 295 (347)
..+|..++..|+++.|+.++-+||.+.|
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 4566666666666666666666666554
No 332
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.12 E-value=10 Score=35.88 Aligned_cols=70 Identities=14% Similarity=-0.003 Sum_probs=47.7
Q ss_pred HHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 215 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
+..+=..|...+.|+.|.....++.- + .. ...+...+..++.+|.++.-.++|.+|.+++..|++..
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~f--P--------~~---~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLEY--P--------HT---DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHCS--C--------TT---TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCcC--C--------cc---cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 33334445555666666666666531 0 00 01234457788889999999999999999999999988
Q ss_pred CCC
Q 019054 295 DDN 297 (347)
Q Consensus 295 p~~ 297 (347)
|.+
T Consensus 301 p~~ 303 (523)
T 4b4t_S 301 PHN 303 (523)
T ss_dssp SCS
T ss_pred Ccc
Confidence 754
No 333
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=52.92 E-value=30 Score=33.79 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKVS 346 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (347)
..+...+|+..+..|+|.-|.+....++..+|+|.+++..++.+.++++
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999998887764
No 334
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.04 E-value=1.3e+02 Score=27.54 Aligned_cols=76 Identities=16% Similarity=0.078 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhh-c---CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCCH
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMR-D---GDDN--VKALFRQGQAYMALNDVDAAVESFEKALK---LEPNDG 332 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~-~---~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~ 332 (347)
..+.+...+|..|...|++.+|......... . .+.. ...+......+...++|..|...+.++.. -.+.++
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 3556778899999999999999999888752 2 2111 46788889999999999999999998742 234455
Q ss_pred HHHHH
Q 019054 333 GIKKE 337 (347)
Q Consensus 333 ~~~~~ 337 (347)
.....
T Consensus 215 ~lk~~ 219 (445)
T 4b4t_P 215 SLKLE 219 (445)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.12 E-value=23 Score=36.28 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=40.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325 (347)
Q Consensus 270 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 325 (347)
++..+...+.++-| .+.+..-|.++-.-|-+|.+|...|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44445556666644 34567778887778999999999999999999999875
No 336
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=50.91 E-value=44 Score=21.05 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChh-HHHHHHHHHHhcCCHHHHH
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK-ALFRQGQAYMALNDVDAAV 318 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~-a~~~~g~~~~~~~~~~~A~ 318 (347)
.+..+|.+-.-....++|....+- |...+...+ +-.-+...+...|+|++|+
T Consensus 8 lLAe~AL~~TG~HcH~EA~tIA~~-L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 8 QLAELALAGTGHHCHQEAASIADW-LAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHH-HHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHccchHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 344456666667778888666543 445554433 3444667888999999986
No 337
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=50.82 E-value=68 Score=28.96 Aligned_cols=116 Identities=12% Similarity=0.053 Sum_probs=64.3
Q ss_pred hhHHHHHHcCccccchh------hHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChH--
Q 019054 210 NAVDSIKVFGNEHYKKQ------DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK-- 281 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~g------~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~-- 281 (347)
+.+..++++|..+...+ ..+.|..+|++|..++.++...-.. .....+.+....++.+++.+..+.=-+.
T Consensus 121 E~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~--~~~~Dls~~~l~~L~~l~LAQAQE~~~~Ka 198 (392)
T 1zb1_A 121 EKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLN--SPSVDLQSENTRFLANICHAEAQELFVLKL 198 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCC--CSSGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544443322 5889999999999888876432111 1112255555555555444433211122
Q ss_pred ------------------HHHHHHHHHhh---cCC--------CC-------------hhHHHHHHHHHHhcCCHHHHHH
Q 019054 282 ------------------GALLDTEFAMR---DGD--------DN-------------VKALFRQGQAYMALNDVDAAVE 319 (347)
Q Consensus 282 ------------------~A~~~~~~al~---~~p--------~~-------------~~a~~~~g~~~~~~~~~~~A~~ 319 (347)
++..+|++|.+ ..+ .. +.|+|..|......+++-+|+.
T Consensus 199 i~~~~~~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa 278 (392)
T 1zb1_A 199 LNDQISSKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIA 278 (392)
T ss_dssp TTSTTGGGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HhccccCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 22234444432 121 11 2367777888888889999998
Q ss_pred HHHHHHhh
Q 019054 320 SFEKALKL 327 (347)
Q Consensus 320 ~~~~al~l 327 (347)
.++.|.+.
T Consensus 279 ~L~~A~~~ 286 (392)
T 1zb1_A 279 FLDFSMQQ 286 (392)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877643
No 338
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=50.52 E-value=61 Score=25.91 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 325 (347)
..-.-++....-.|.|..|+-++. .-+..-+.|..+.||..+++|..|+.++++.+
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888899999877652 23457788889999999999999999999999
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.44 E-value=38 Score=34.75 Aligned_cols=71 Identities=10% Similarity=-0.138 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh-cCC--------------------C--ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMR-DGD--------------------D--NVKALFRQGQAYMALNDVDAAVESFEK 323 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~-~~p--------------------~--~~~a~~~~g~~~~~~~~~~~A~~~~~~ 323 (347)
-+-+|.+|+..|++++|..++++|-. +.. . ....|......+...+-|+-+++..+.
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 46799999999999999999998741 111 1 123566678889999999999999999
Q ss_pred HHhhC-CCCHHHHHH
Q 019054 324 ALKLE-PNDGGIKKE 337 (347)
Q Consensus 324 al~l~-P~~~~~~~~ 337 (347)
|++.. ++++.....
T Consensus 923 AI~~~~~dd~~l~~~ 937 (950)
T 4gq2_M 923 ADASKETDDEDLSIA 937 (950)
T ss_dssp HHHTCCSCCHHHHHH
T ss_pred HHhhcccCCccchHH
Confidence 99754 456654443
No 340
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=50.11 E-value=25 Score=24.70 Aligned_cols=10 Identities=20% Similarity=0.052 Sum_probs=3.9
Q ss_pred HHHHHHhhCC
Q 019054 320 SFEKALKLEP 329 (347)
Q Consensus 320 ~~~~al~l~P 329 (347)
.|..+++..|
T Consensus 44 ~l~~alk~e~ 53 (93)
T 1wfd_A 44 MLLQVLKGTK 53 (93)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHCC
Confidence 3333344343
No 341
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=49.66 E-value=34 Score=22.86 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCChh
Q 019054 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299 (347)
Q Consensus 268 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~ 299 (347)
..+|..+...|++++|+.++-+|+...|.-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45788899999999999999999999886543
No 342
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=48.71 E-value=54 Score=22.19 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
...+|.=|..+|+|+.|+.+|+.++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 56677888888888888888888774
No 343
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=48.57 E-value=18 Score=24.59 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHh
Q 019054 303 RQGQAYMALNDVDAAVESFEKALKLE------PNDGGIKKELAVAKKKV 345 (347)
Q Consensus 303 ~~g~~~~~~~~~~~A~~~~~~al~l~------P~~~~~~~~l~~~~~~~ 345 (347)
.+|.=|..+|+|+.|+.+|+-+++.- =.|+..+..-..+++.+
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei 65 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEI 65 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHH
Confidence 45667778889999999888887651 12555554444444443
No 344
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=48.51 E-value=45 Score=28.43 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHhhc
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMRD 293 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al~~ 293 (347)
-+.|...|++|..++..-. +.....|....+.+|.+..|.. ++++++|+..+++|+.-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L--------~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFL--------EKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------TTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--------CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567888999988653211 0023667777888888888875 69999999998888753
No 345
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=47.94 E-value=47 Score=27.78 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHH-cCChHHHHHHHHHHh
Q 019054 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (347)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al 291 (347)
-+.|...|++|..++..- ....+|....+.+|.+..|.. ++++++|+..+++|+
T Consensus 149 ~e~a~~aY~~A~~iA~~~----------L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKE----------MPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----------CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788899998865421 112567777788888888775 589999999888876
No 346
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.62 E-value=98 Score=24.13 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=43.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCC------hhHHHH-HHHH--HHhcCCHHHHHHHHHHHHhh
Q 019054 270 SSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFR-QGQA--YMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 270 la~~~~~l~~~~~A~~~~~~al~~~p~~------~~a~~~-~g~~--~~~~~~~~~A~~~~~~al~l 327 (347)
.+..++..|+|-+|-+.++.+-...+.. .+.+.+ +|.+ +...|+..-|...+.+++..
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666799999999999988776544 455555 5444 45579999999999999873
No 347
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=47.59 E-value=29 Score=23.73 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=7.5
Q ss_pred hcCCHHHHHHHHHHHHh
Q 019054 310 ALNDVDAAVESFEKALK 326 (347)
Q Consensus 310 ~~~~~~~A~~~~~~al~ 326 (347)
..|+|++|+..|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34444444444444433
No 348
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.45 E-value=60 Score=25.39 Aligned_cols=69 Identities=7% Similarity=0.044 Sum_probs=46.6
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHH-HHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIF-TNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
.....|..+|+.|+|-+|.+.++.+-.-. ...+.+ ..-....+. ...|..+.+.|+...|...+.+|+.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~------~~~~~e----r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNY------GRGNTE----SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTT------CSSSHH----HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhc------CCCchH----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34667778888999999999998776511 011001 222333444 5566667778999999999999975
No 349
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=47.20 E-value=21 Score=33.52 Aligned_cols=34 Identities=9% Similarity=-0.026 Sum_probs=29.1
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
......++.-+|.+|+.+++|++|+..++++|..
T Consensus 199 r~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 199 KIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455678888999999999999999999999864
No 350
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=46.12 E-value=26 Score=25.84 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=6.4
Q ss_pred HHHHHHHcCChHHHHHH
Q 019054 270 SSACKLKLGDLKGALLD 286 (347)
Q Consensus 270 la~~~~~l~~~~~A~~~ 286 (347)
.|.-.-..++|++|+.+
T Consensus 24 ~Ave~D~ag~y~eAl~l 40 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQL 40 (117)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHccCHHHHHHH
Confidence 33333333444444333
No 351
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=44.36 E-value=35 Score=31.58 Aligned_cols=33 Identities=15% Similarity=-0.016 Sum_probs=28.1
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
......++.-+|.+|+.+++|++|+..++++|.
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 344556788899999999999999999999985
No 352
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.21 E-value=12 Score=27.54 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFA 290 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~a 290 (347)
.|.+.|.-.-..|+-+.|+.+|++.
T Consensus 24 ~~Is~AL~~DE~g~k~~Al~lYk~G 48 (116)
T 2dl1_A 24 LFVNKGLNTDELGQKEEAKNYYKQG 48 (116)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 3445555555555555555544443
No 353
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=42.66 E-value=36 Score=31.49 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=28.3
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
......++.-+|.+|+.+++|++|+..++++|.
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 345567788899999999999999999999985
No 354
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.73 E-value=1.5e+02 Score=24.40 Aligned_cols=65 Identities=9% Similarity=0.048 Sum_probs=47.6
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
.++....+|...+.+ .+.+...|..... +.-..+..|-..|..+...|+|.+|.+.|++.++..-
T Consensus 115 nD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 115 DDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp TCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 455666666665543 2455566666554 4455677888889999999999999999999999763
No 355
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=40.60 E-value=39 Score=31.40 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=28.8
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
......++.-+|.+|+.+++|++|+..++++|..
T Consensus 198 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 198 YINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3445667888999999999999999999999864
No 356
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=40.18 E-value=32 Score=30.81 Aligned_cols=48 Identities=10% Similarity=-0.051 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
++..|.+|+...+.. ......--|.-+|.++.+.+++.+|+..+..|-
T Consensus 276 ~l~L~~~AI~sa~~y-------------Y~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKRE-------------YSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHH-------------STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------hccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 677888888855543 333344557788999999999999999887764
No 357
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=39.60 E-value=1e+02 Score=22.11 Aligned_cols=51 Identities=10% Similarity=-0.020 Sum_probs=21.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 019054 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVES 320 (347)
Q Consensus 269 nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A~~~ 320 (347)
.+|.+-.-...+++|....+- |...++..-+-.-|...++..|+|++|+..
T Consensus 12 E~AL~gTG~H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l 62 (116)
T 2p58_C 12 EIALIGTGNHYHEEANCIAEW-LHLKGEEEAVQLIRLSSLMNRGDYASALQQ 62 (116)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHh
Confidence 334444444455555443322 222222222222334455555666665544
No 358
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=39.41 E-value=45 Score=23.21 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=34.6
Q ss_pred hhHHHHHHcCccccch---hhHHHHHHHHHHHHHHhhhccccCC-CChhhhhhHHhhHHHHHHHHHHHHHH
Q 019054 210 NAVDSIKVFGNEHYKK---QDYKMALRKYRKALRYLDICWEKEG-IDEGKSSSLRKTKSQIFTNSSACKLK 276 (347)
Q Consensus 210 ~~a~~~~~~g~~~~~~---g~y~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~nla~~~~~ 276 (347)
+.|-.+.+.|-..-.. |+-+.|+.+|.+++.-+..-...+- -..+.|.....+......|+..+-.+
T Consensus 14 ~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~R 84 (89)
T 3eab_A 14 KQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDR 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444 6666777777777765544222111 13344445555555555666555433
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.21 E-value=53 Score=34.38 Aligned_cols=69 Identities=10% Similarity=-0.151 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh-c--C--------------------CCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 019054 266 IFTNSSACKLKLGDLKGALLDTEFAMR-D--G--------------------DDNVKALFRQGQAYMALNDVDAAVESFE 322 (347)
Q Consensus 266 ~~~nla~~~~~l~~~~~A~~~~~~al~-~--~--------------------p~~~~a~~~~g~~~~~~~~~~~A~~~~~ 322 (347)
..+-+|.+++..|++++|..+|.+|-. + + ..-+..|+.....+...+.++.+++.-+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 346789999999999999999988731 1 1 0113456666778889999999999999
Q ss_pred HHHhhCCC-CHHH
Q 019054 323 KALKLEPN-DGGI 334 (347)
Q Consensus 323 ~al~l~P~-~~~~ 334 (347)
.|++..+. ++..
T Consensus 924 lAi~~~~~~~~~~ 936 (1139)
T 4fhn_B 924 LADASKETDDEDL 936 (1139)
T ss_dssp HHHHHCCSCCHHH
T ss_pred HHHHhccCCChhh
Confidence 99988754 4443
No 360
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=39.00 E-value=64 Score=29.74 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCC--------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 281 KGALLDTEFAMRDGD--------DNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 281 ~~A~~~~~~al~~~p--------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+..+.+++.|+..=| +-.-|+..+|++|+.+++|++|+...++++..
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 455666666654433 22567888999999999999999999998853
No 361
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=38.41 E-value=33 Score=31.57 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
......++.-+|.+|+.+++|++|+..++++|
T Consensus 197 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 197 HATQAAANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp SCBHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 34556778889999999999999999999987
No 362
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=38.07 E-value=3.7e+02 Score=28.01 Aligned_cols=65 Identities=9% Similarity=-0.138 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
....|+.+-.+|.+.|+.++|...+.+.-+. -..+.-.|..+-..|...|+.++|.+.|++..+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3445777788999999999999999765432 2347788888999999999999999999998764
No 363
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=37.74 E-value=36 Score=31.10 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
++..|.+|+...+.. ......--|.-+|.++++.+++.+|+..+..|-
T Consensus 298 ~~~L~~~AI~sa~~~-------------Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTY-------------YRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHH-------------STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------hccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 567788888755443 333444567788999999999999999887664
No 364
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=43.69 E-value=7 Score=38.42 Aligned_cols=53 Identities=15% Similarity=0.038 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCHHHH
Q 019054 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317 (347)
Q Consensus 265 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~~~~A 317 (347)
......|...+..|+|+.|.+.++.++..+|+|.+|...++.+|.++|.-.+.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 45667788888899999999999999999999999999999999999977664
No 365
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=37.16 E-value=40 Score=25.95 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~ 294 (347)
..+.++..+|.+|.++|+-.+|-+...+|.+..
T Consensus 123 ~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 123 VSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 347889999999999999999999999998653
No 366
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=37.01 E-value=66 Score=22.52 Aligned_cols=62 Identities=11% Similarity=-0.021 Sum_probs=33.9
Q ss_pred HcCccccchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 217 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
..|..+|+.|+|-+|.+.++..-.-.+ . ....-....+....|..+.+.|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~---------~---~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKAT---------G---EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC---------H---HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCC---------C---chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 345567777888888888777665110 0 001112233334444445556666 7777777654
No 367
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=36.61 E-value=80 Score=29.25 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhhcCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 280 LKGALLDTEFAMRDGDD--------NVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 280 ~~~A~~~~~~al~~~p~--------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
|+..+.+++.|+..=|. -.-|+..+|++|+.+++|++|+...++++...
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 45667777777764332 24578889999999999999999999998753
No 368
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=35.69 E-value=40 Score=30.77 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 019054 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (347)
Q Consensus 231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al 291 (347)
++..|.+||+..+.. ......--|.-+|.++.+.++|.+|+..+..|-
T Consensus 283 ~~~Lf~~AI~~ar~~-------------Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 283 PLTLYHKGIASAKTY-------------YRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HHHHHHHHHHHHHHH-------------STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------------cccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 567788888755543 333445567888999999999999999988774
No 369
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.61 E-value=1.5e+02 Score=26.72 Aligned_cols=103 Identities=14% Similarity=-0.031 Sum_probs=62.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-------CCC
Q 019054 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD-------GDD 296 (347)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~-------~p~ 296 (347)
...+.++|++..++....+............ ..........+...++..|+..++.++|....+++-.. +|.
T Consensus 88 ~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~-~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~ 166 (393)
T 4b4t_O 88 DSKDFDESLKYLDDLKAQFQELDSKKQRNNG-SKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLR 166 (393)
T ss_dssp HTTCHHHHHHHHHHHTTTSHHHHSSCCCCCC-SSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSH
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhhhcccc-hhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHH
Confidence 3457788888887765543322111000000 00011123445667888999999999998888887532 221
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 297 -NVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 297 -~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
..+.|...+..|...++|.++....-.++..
T Consensus 167 v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 167 ITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2455566777888899999988887777753
No 370
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=35.50 E-value=43 Score=31.52 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=28.3
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
......++.-+|.+|+.+++|++|+..++++|..
T Consensus 178 r~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 178 RATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445567888899999999999999999999863
No 371
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.45 E-value=1.1e+02 Score=29.97 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=21.0
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHhhCCCC
Q 019054 301 LFRQGQAY--MALNDVDAAVESFEKALKLEPND 331 (347)
Q Consensus 301 ~~~~g~~~--~~~~~~~~A~~~~~~al~l~P~~ 331 (347)
+..+..++ +..|+|+.|++.+++ +.+-|-+
T Consensus 539 Ll~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 539 LLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 34444444 788999999998887 6677866
No 372
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=34.60 E-value=74 Score=29.37 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcCC--------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 281 KGALLDTEFAMRDGD--------DNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 281 ~~A~~~~~~al~~~p--------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
+..+.+++.|+..=| +-.-|+..+|++|+.+++|++|+...++++..
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 445555666554323 22557888999999999999999999998863
No 373
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=34.47 E-value=8.3 Score=32.81 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=0.0
Q ss_pred hHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (347)
Q Consensus 211 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (347)
.|..+...|..+-+.|+|++|+.+|..|++++..+.
T Consensus 22 ~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~al 57 (257)
T 2ymb_A 22 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL 57 (257)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 566778888888999999999999999999876543
No 374
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=34.19 E-value=2.5e+02 Score=29.91 Aligned_cols=86 Identities=13% Similarity=-0.011 Sum_probs=54.5
Q ss_pred HHhhHHHHHHHHHHHHHHc----CChHHH----HHHHHHHhh-cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 259 LRKTKSQIFTNSSACKLKL----GDLKGA----LLDTEFAMR-DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l----~~~~~A----~~~~~~al~-~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
......++++..|.++.++ ...++. .+.|.+.++ .++.+.|++.....-....++|-.|++.+.++++-.|
T Consensus 1236 ~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~ 1315 (1354)
T 3lxu_X 1236 QKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKR 1315 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445566777755555543 222222 333444444 3567777766555555678999999999999999887
Q ss_pred CCHHHHHHHHHHHHHh
Q 019054 330 NDGGIKKELAVAKKKV 345 (347)
Q Consensus 330 ~~~~~~~~l~~~~~~~ 345 (347)
..+....+..+.+.+
T Consensus 1316 -~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1316 -TRDHFVELAAINGAL 1330 (1354)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHc
Confidence 556666666665544
No 375
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=33.88 E-value=63 Score=29.88 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=29.0
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
......++.-+|.+|+.+++|++|+..+++++..
T Consensus 187 r~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 187 KPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3445678888999999999999999999999854
No 376
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.50 E-value=1.6e+02 Score=24.22 Aligned_cols=43 Identities=12% Similarity=-0.153 Sum_probs=31.0
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 019054 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALND 313 (347)
Q Consensus 271 a~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~~~ 313 (347)
-.++++.|.|++|.+.+++.+.-++++-+.-..+..+-.....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 3566889999999999999998777766665555555444443
No 377
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=33.17 E-value=1.3e+02 Score=21.50 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=5.7
Q ss_pred HHHHhcCCHHHHH
Q 019054 306 QAYMALNDVDAAV 318 (347)
Q Consensus 306 ~~~~~~~~~~~A~ 318 (347)
..++..|+|++|+
T Consensus 47 sSLmNrG~Yq~Al 59 (115)
T 2uwj_G 47 SSLANQGRYQEAL 59 (115)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHcchhHHHHH
Confidence 3444444444444
No 378
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=31.44 E-value=95 Score=28.95 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 328 (347)
.-|+..+|++|+.+++|++|+...++++...
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4578889999999999999999999998753
No 379
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=31.24 E-value=59 Score=29.96 Aligned_cols=97 Identities=10% Similarity=-0.018 Sum_probs=53.8
Q ss_pred HHHHcCccccchhhHHHHHHHHHHHHHHhhhcccc--CCCCh---hhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 019054 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK--EGIDE---GKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (347)
Q Consensus 214 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~ 288 (347)
-+..+++.+.+.++|.+|--.+.....++..-... +.... -...........++...+..+.+-+.|+.|+..|+
T Consensus 37 ~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k 116 (436)
T 2yin_A 37 YLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCK 116 (436)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35677888899999999998886555544321110 00000 00011111223456666666777788999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHh
Q 019054 289 FAMRDGDDNVKALFRQGQAYMA 310 (347)
Q Consensus 289 ~al~~~p~~~~a~~~~g~~~~~ 310 (347)
.++.....+..-|-.++.++..
T Consensus 117 ~L~~~yE~~~~Dy~~Ls~~~~~ 138 (436)
T 2yin_A 117 ELAEQYEMEIFDYELLSQNLIQ 138 (436)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9886543332333344444433
No 380
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=30.60 E-value=29 Score=17.74 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=12.7
Q ss_pred eeeCCCCCCCceEEEecCCC
Q 019054 108 MANAGPNTNGSQFFITTTRT 127 (347)
Q Consensus 108 ~~~~~~~~~~sqF~i~~~~~ 127 (347)
|+...+....|..|||+.+.
T Consensus 1 ma~kpeKR~aSSvFITLapp 20 (26)
T 2k9u_B 1 MASKPEKRVASSVFITLAPP 20 (26)
T ss_dssp CCCCSSSSCEEEEEEEECCS
T ss_pred CCCcchhheeeeEEEEecCc
Confidence 34434445567889999763
No 381
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.11 E-value=2e+02 Score=22.46 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=49.2
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
.++....+|...+.+. +.+...|..... +.-..+..|-..|..+...|++.+|.+.|+.+++...
T Consensus 61 nD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp TCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 6677777777777653 335556666554 4456677888889999999999999999999999763
No 382
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.73 E-value=61 Score=30.11 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=29.3
Q ss_pred HhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 019054 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (347)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~ 293 (347)
......++.-+|.+|+.+++|++|+..++++|..
T Consensus 193 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 193 LFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 4456678888999999999999999999999854
No 383
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=29.60 E-value=1.3e+02 Score=22.35 Aligned_cols=38 Identities=3% Similarity=0.007 Sum_probs=32.5
Q ss_pred HHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (347)
.++.+......+..+...++++++.....||+.++.++
T Consensus 32 Lydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L 69 (131)
T 3iqc_A 32 LYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTEL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 56677788888888999999999999999999988764
No 384
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.35 E-value=49 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 019054 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (347)
Q Consensus 302 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (347)
..+|..+...|+++.|+..|-+|+...|+=.++..-+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578888888899999998889999888644444433
No 385
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.09 E-value=2e+02 Score=22.14 Aligned_cols=65 Identities=8% Similarity=-0.050 Sum_probs=48.4
Q ss_pred HHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh--cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 019054 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (347)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 329 (347)
.++....+|...+.. .+++...|..... +.-..+..|-..|..+...|++.+|.+.|+..++...
T Consensus 66 nD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 66 NDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp TCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 566666666666544 2446677766664 4455677788889999999999999999999998753
No 386
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=28.81 E-value=1e+02 Score=23.47 Aligned_cols=40 Identities=10% Similarity=0.012 Sum_probs=33.1
Q ss_pred HHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhc
Q 019054 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (347)
Q Consensus 206 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (347)
.-.++.+......+..+...++++++-....||+.++.++
T Consensus 27 ~mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL 66 (145)
T 1vh6_A 27 LMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQEL 66 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888899999999999999999987654
No 387
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=28.20 E-value=44 Score=30.69 Aligned_cols=99 Identities=11% Similarity=0.002 Sum_probs=54.8
Q ss_pred HHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc--------ccC---CCCh---hh-hhh----------HHhhHHHH
Q 019054 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW--------EKE---GIDE---GK-SSS----------LRKTKSQI 266 (347)
Q Consensus 212 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~--------~~~---~~~~---~~-~~~----------~~~~~~~~ 266 (347)
..-+..+++.+.+.++|.+|.-++..+..++-++. ... .+.. ++ .-. .......+
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~l 90 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMEL 90 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHH
Confidence 34567788888899999999998875554332210 000 0000 00 000 11122335
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHHHHHHHHHhc
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 311 (347)
+...+..+.+-+.|+.|+..|+.++...... .-|-.++.+|..+
T Consensus 91 l~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~-~dy~~Ls~~~~~~ 134 (428)
T 2wm9_A 91 LEQCADGLWKAERYELIADIYKLIIPIYEKR-RDFERLAHLYDTL 134 (428)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHTTTHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 5555666667788999999998877553322 3344455555544
No 388
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=27.49 E-value=2.5e+02 Score=27.03 Aligned_cols=107 Identities=7% Similarity=-0.133 Sum_probs=58.3
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCChhHHH
Q 019054 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (347)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~ 302 (347)
..+.+.+.|...+.+..+. ...+ ..........+|.-.+..+...++...+.++.....++...-.
T Consensus 225 lar~d~~~A~~~~~~~~~~-------~~~~-------~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 290 (618)
T 1qsa_A 225 VARQDAENARLMIPSLAQA-------QQLN-------EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER 290 (618)
T ss_dssp HHHHCHHHHHHHHHHHHHH-------TTCC-------HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHhcCHHHHHHHHHhhhhc-------cCCC-------HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHH
Confidence 3455667777777655431 0111 1122233334444444455466777777777665554444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 019054 303 RQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (347)
Q Consensus 303 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (347)
+.+.++ ..++++.|...|++.-.-..........++++...
T Consensus 291 ~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~ 331 (618)
T 1qsa_A 291 RVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE 331 (618)
T ss_dssp HHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH
T ss_pred HHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHH
Confidence 444444 56999999998876544323345555566655443
No 389
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=26.51 E-value=51 Score=24.95 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=32.5
Q ss_pred CCccEEEeeeCCCCCCCceEEEecCCCCCCCC------CCceeeEEEeChHHHHHH
Q 019054 101 ERKGMLSMANAGPNTNGSQFFITTTRTSHLDG------KHVVFGRVIKGMGVVRSI 150 (347)
Q Consensus 101 ~~~g~~~~~~~~~~~~~sqF~i~~~~~~~l~~------~~~vfG~v~~g~~vl~~I 150 (347)
..+|-|+....+. -|.|..++.|...+ .-.++|+|.+|++.+..+
T Consensus 73 ~~~GDIaYw~pgg-----~LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v 123 (136)
T 1zx8_A 73 VEIGDVGYWPPGK-----ALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKI 123 (136)
T ss_dssp BCTTEEEEEGGGT-----EEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGC
T ss_pred CCCCcEEEeCCCC-----EEEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhC
Confidence 4579999886654 48888888764332 358899999998776543
No 390
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=25.72 E-value=75 Score=29.53 Aligned_cols=31 Identities=10% Similarity=-0.005 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
....++.-+|.+|+.+++|++|+..+++++.
T Consensus 178 tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 178 TQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3446788899999999999999999999884
No 391
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=25.64 E-value=67 Score=24.59 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=37.2
Q ss_pred hhHHHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (347)
Q Consensus 204 ~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (347)
.+......+..+...|..+...|+++.|.-.|.++..++-...
T Consensus 32 ~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~I 74 (146)
T 2xze_A 32 PPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKL 74 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTG
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc
Confidence 4667788899999999999999999999999999988775433
No 392
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=24.68 E-value=82 Score=19.53 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=27.7
Q ss_pred HHHhhHHHHHHcCccccchhhHHHHHHHHHHHHHHh
Q 019054 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242 (347)
Q Consensus 207 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~ 242 (347)
..+..|+.+-..+.....-.+...|++.+++||+++
T Consensus 15 ~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL 50 (53)
T 2rkl_A 15 SKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLL 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 345567777777777778888999999999998854
No 393
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=24.52 E-value=16 Score=33.83 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=0.0
Q ss_pred HhhHHHHHHcCccccchhhHHHHHHHHHHHHHHhhhcc
Q 019054 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (347)
Q Consensus 209 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (347)
.+.|..+...|..+-+.|+|++|+.+|.+|++++..+.
T Consensus 8 ~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~ 45 (444)
T 2zan_A 8 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV 45 (444)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34667777888888899999999999999999887653
No 394
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=24.43 E-value=2.2e+02 Score=21.15 Aligned_cols=41 Identities=5% Similarity=-0.051 Sum_probs=33.1
Q ss_pred HHhhHHHHHHcCccccchhhH-HHH---HHHHHHHHHHhhhcccc
Q 019054 208 WMNAVDSIKVFGNEHYKKQDY-KMA---LRKYRKALRYLDICWEK 248 (347)
Q Consensus 208 ~~~~a~~~~~~g~~~~~~g~y-~~A---~~~y~~al~~~~~~~~~ 248 (347)
.++.+......+......|++ +++ -....||+.++.++...
T Consensus 25 Lydgai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~s 69 (130)
T 1orj_A 25 LYDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSF 69 (130)
T ss_dssp HHHHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888888899999999 888 88899999988765443
No 395
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=24.23 E-value=3.5e+02 Score=23.44 Aligned_cols=108 Identities=9% Similarity=-0.014 Sum_probs=59.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccccCCCChhhhhhHHhhHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----CCCC
Q 019054 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD-----GDDN 297 (347)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~-----~p~~ 297 (347)
...|+|.+|.+.|+......... +....-..+++.-|..+++.|++..|.+.+...++. .|-+
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~------------~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~ 91 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRS------------KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD 91 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred hhccChHHHHHHHHHHHHHHHHh------------cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence 45677888888776655422100 122345566777788888888888887766555433 2334
Q ss_pred hhHHHHHHHHHHhcCCHH-HHHHHHHHHHhhC------C-CCHHHHHHHHHHH
Q 019054 298 VKALFRQGQAYMALNDVD-AAVESFEKALKLE------P-NDGGIKKELAVAK 342 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~-~A~~~~~~al~l~------P-~~~~~~~~l~~~~ 342 (347)
....-++..++.....-+ +=.+..++|++.. | .+++++..++...
T Consensus 92 ~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~ 144 (312)
T 2wpv_A 92 DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKL 144 (312)
T ss_dssp HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence 445555665555433211 1123334444332 1 3777777766553
No 396
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=24.09 E-value=2e+02 Score=22.90 Aligned_cols=26 Identities=12% Similarity=-0.105 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 267 FTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 267 ~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
....=.-+.++|+|++|..+..+...
T Consensus 35 kLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 35 KLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444567789999999999888763
No 397
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=23.41 E-value=1.7e+02 Score=25.26 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHh----------cCCHHHHHHHHHHHHhhC
Q 019054 295 DDNVKALFRQGQAYMA----------LNDVDAAVESFEKALKLE 328 (347)
Q Consensus 295 p~~~~a~~~~g~~~~~----------~~~~~~A~~~~~~al~l~ 328 (347)
|+...+.+.-+..+-. ..+-+.-+++++||+++.
T Consensus 182 ~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA 225 (298)
T 2r17_C 182 PDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIA 225 (298)
T ss_dssp HHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHH
Confidence 6667777777777653 257778899999998874
No 398
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=22.45 E-value=1.6e+02 Score=27.44 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.-|+..+|++|+..++|++|+...++++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888999999999999999999999864
No 399
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=22.43 E-value=82 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.007 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 019054 226 QDYKMALRKYRKALRY 241 (347)
Q Consensus 226 g~y~~A~~~y~~al~~ 241 (347)
++.+++..++.+|.+.
T Consensus 4 ~~~ee~~~wl~~A~~d 19 (141)
T 3o10_A 4 GNPVEARRWLRQARAN 19 (141)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhh
Confidence 4566777777777663
No 400
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=21.70 E-value=0.12 Score=48.50 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=28.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 019054 308 YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (347)
Q Consensus 308 ~~~~~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (347)
|...|.|++=+..++.++.+.-.+-.+-.+|+.+..
T Consensus 239 YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 239 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp SSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 677888888888888888887777777777776643
No 401
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=21.56 E-value=1.4e+02 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.004 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 019054 298 VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (347)
Q Consensus 298 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 327 (347)
.-|+-.+|++|+.+++|++|+...++++..
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 457888999999999999999999999864
No 402
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=21.08 E-value=98 Score=29.16 Aligned_cols=32 Identities=13% Similarity=-0.044 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 019054 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (347)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~ 292 (347)
.....++.-+|.+|+.+++|++|+..++++|.
T Consensus 195 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 195 ACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44556788889999999999999999999985
No 403
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=20.24 E-value=1.3e+02 Score=20.58 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHHhhcCCCChhHH
Q 019054 279 DLKGALLDTEFAMRDGDDNVKAL 301 (347)
Q Consensus 279 ~~~~A~~~~~~al~~~p~~~~a~ 301 (347)
...+++....++|+.+|+++..+
T Consensus 25 ~~~~~v~~Ai~~L~~~PsnPa~L 47 (85)
T 2ca5_A 25 TLQGELTLALDKLAKNPSNPQLL 47 (85)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHH
Confidence 34555666666666666666553
Done!