BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019056
         (346 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
           Features Of The Mammalian Exocyst
          Length = 571

 Score = 32.3 bits (72), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 104 DKLISRAINATIVLGAGTFAVTRLLTIDHDYWHGWTLYEILRYVPEHNWIAYEQALKANP 163
           D LI  A++  ++ G    +  R   I HD+    T++ ILR++ +     ++Q L+   
Sbjct: 232 DSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHL-KQTKPEFDQVLQGTA 290

Query: 164 VLAKMAISGIV 174
              K  + G++
Sbjct: 291 ASTKNKLPGLI 301


>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
           Plasmodium Falciparum
 pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
           Plasmodium Falciparum
          Length = 556

 Score = 31.2 bits (69), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 227 QDWWVVPA-KVAFDQTVWAAVWNSIY-------FVVLGFLRFESAANIFSELKSTFWPM 277
            D +V+ A     D TV AA  + I+       F+  G LR   A N+++ LKSTF  M
Sbjct: 254 HDHYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLLRKNEAENVYTFLKSTFPDM 312


>pdb|3ZS6|A Chain A, The Structural Characterization Of Burkholderia
           Pseudomallei Oppa
          Length = 506

 Score = 28.9 bits (63), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 133 DYWHGWTLYEILRYVPEHNWIAY------EQALKANPVLAKMAISGIVYFIGDWIAQCYE 186
           DY    T ++++R     N + Y          +AN  L   A + ++    D     Y 
Sbjct: 409 DYNDAMTFFDLIRCGSSQNTVGYCNPKVDSLVAEANQKLDDGARAALLTQAHDLAMNDYP 468

Query: 187 GKPLFDFDLQRMFRSGLVGFTL 208
             PLF +   R+ +S + G+TL
Sbjct: 469 MVPLFQYSADRLVKSYVGGYTL 490


>pdb|1DLC|A Chain A, Crystal Structure Of Insecticidal Delta-Endotoxin From
           Bacillus Thuringiensis At 2.5 Angstroms Resolution
          Length = 584

 Score = 28.1 bits (61), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 202 GLVGFTLHGSLSHYYYKFCEALFPFQDWW 230
           G+VGF   G+L  +Y  F   ++P +D W
Sbjct: 18  GVVGFPFGGALVSFYTNFLNTIWPSEDPW 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,475,704
Number of Sequences: 62578
Number of extensions: 369614
Number of successful extensions: 580
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 6
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)