Query 019056
Match_columns 346
No_of_seqs 164 out of 964
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 100.0 1.7E-38 3.7E-43 295.4 13.0 171 159-329 46-220 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.8 5.1E-22 1.1E-26 152.6 4.6 68 255-322 1-68 (68)
3 KOG1944 Peroxisomal membrane p 58.4 14 0.0003 34.8 4.2 50 103-152 48-98 (222)
4 cd07215 Pat17_PNPLA8_PNPLA9_li 23.4 89 0.0019 30.7 3.6 51 126-176 1-55 (329)
5 PF10929 DUF2811: Protein of u 22.6 1.1E+02 0.0024 23.3 3.2 28 180-209 13-40 (57)
6 PF03818 MadM: Malonate/sodium 22.3 2E+02 0.0043 22.3 4.5 37 153-189 2-38 (60)
7 COG0534 NorM Na+-driven multid 21.2 8.4E+02 0.018 25.0 10.4 93 167-262 66-163 (455)
8 PLN02953 phosphatidate cytidyl 17.0 1.2E+03 0.026 24.4 14.6 52 99-160 91-143 (403)
9 PF03988 DUF347: Repeat of Unk 16.5 4.5E+02 0.0098 19.3 5.3 38 165-210 5-42 (55)
10 COG1284 Uncharacterized conser 16.4 4E+02 0.0086 26.3 6.4 56 161-218 110-184 (289)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=295.42 Aligned_cols=171 Identities=32% Similarity=0.660 Sum_probs=162.2
Q ss_pred HHhCChhHHHHHHHHHH-HHHHHHHhhhcCCC---CCCCcHHHHHHHHHHhhhhhchhhhHHHHHhhhhcCCCCcccchh
Q 019056 159 LKANPVLAKMAISGIVY-FIGDWIAQCYEGKP---LFDFDLQRMFRSGLVGFTLHGSLSHYYYKFCEALFPFQDWWVVPA 234 (346)
Q Consensus 159 L~~~PLlTKavTSGvL~-~lGD~iAQ~ie~k~---~~~~D~~Rtlrfal~G~l~~GPl~H~WY~~LdrlfP~~~~~~vl~ 234 (346)
...+|+++++++++.+. ..||+++|.++++. ...+|+.|++||+++|+++.||.+|+||++||+++|.+...++++
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~ 125 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVK 125 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccCccHHHHHH
Confidence 56799999999999999 99999999998765 578999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhHHHHhhccchhhHHHhhhheeccCCchhhhhhHHHHHHHH
Q 019056 235 KVAFDQTVWAAVWNSIYFVVLGFLRFESAANIFSELKSTFWPMLTAGWKLWPFAHLVTYSVIPVEQRLLWVDCVELIWVT 314 (346)
Q Consensus 235 KVllDQlV~aPi~~~~Ff~~~~lLeG~s~~~i~~klk~~~~ptl~asw~vWPpaq~INF~fVP~~~RvLfvn~V~l~Wnt 314 (346)
|+++||++++|+++.+||.+|++++|++.++++++++++++|+++++|++||++|++||+|||+++|++|+|+++++|++
T Consensus 126 kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~~ 205 (222)
T KOG1944|consen 126 KVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVWNT 205 (222)
T ss_pred HHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCcchhhhhh
Q 019056 315 ILSTYSNEKSEARIL 329 (346)
Q Consensus 315 yLS~~~n~~~e~r~~ 329 (346)
|||++++++.+.+.+
T Consensus 206 ~Ls~~~~~~~~~~~~ 220 (222)
T KOG1944|consen 206 YLSYKNASLVELAGA 220 (222)
T ss_pred HHHHHhhcccccccc
Confidence 999999887544433
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.85 E-value=5.1e-22 Score=152.65 Aligned_cols=68 Identities=38% Similarity=0.792 Sum_probs=66.1
Q ss_pred HHHhcCCCHHHHHHHHHhhhHHHHhhccchhhHHHhhhheeccCCchhhhhhHHHHHHHHHHhhccCc
Q 019056 255 LGFLRFESAANIFSELKSTFWPMLTAGWKLWPFAHLVTYSVIPVEQRLLWVDCVELIWVTILSTYSNE 322 (346)
Q Consensus 255 ~~lLeG~s~~~i~~klk~~~~ptl~asw~vWPpaq~INF~fVP~~~RvLfvn~V~l~WntyLS~~~n~ 322 (346)
|+++||++++++++++|++|+++++++|++|||+|++||.|||+++|++|+|+|+++||+|||+++|+
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=58.37 E-value=14 Score=34.84 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=44.3
Q ss_pred chhhhhhHHHHHHHHhhhhhheeeeeeecccc-cchhhHHHHHHhhHHHHH
Q 019056 103 NDKLISRAINATIVLGAGTFAVTRLLTIDHDY-WHGWTLYEILRYVPEHNW 152 (346)
Q Consensus 103 ~~~~~~~~~n~~~~~~~~~~~~~~~~~id~~~-~~gwt~~eilr~~p~~lw 152 (346)
....+.+.++..++...++-++.+.+++++++ +++|.+.++||..+-+.+
T Consensus 48 ~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~ 98 (222)
T KOG1944|consen 48 LYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFL 98 (222)
T ss_pred hhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhh
Confidence 45678888999999889999999999999999 899999999999998743
No 4
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=23.37 E-value=89 Score=30.70 Aligned_cols=51 Identities=24% Similarity=0.161 Sum_probs=36.0
Q ss_pred eeeeecccccchhhHHHHHHhhHHHHHHHH----HHHHHhCChhHHHHHHHHHHH
Q 019056 126 RLLTIDHDYWHGWTLYEILRYVPEHNWIAY----EQALKANPVLAKMAISGIVYF 176 (346)
Q Consensus 126 ~~~~id~~~~~gwt~~eilr~~p~~lw~~Y----~~~L~~~PLlTKavTSGvL~~ 176 (346)
|+|.+|.|=.||-....||+++-.++-..+ ....+.-.+++-.-|+|++.+
T Consensus 1 rILslDGGGirG~~~~~iL~~le~~l~~~~g~~~~~i~~~fDli~GTStGgiia~ 55 (329)
T cd07215 1 RILSIDGGGIRGIIPATILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTC 55 (329)
T ss_pred CEEEEcCChHHHHHHHHHHHHHHHHHhhhcCCCCCcHhhccCeeeccCHHHHHHH
Confidence 689999999999999999998776653221 123344457777777776654
No 5
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=22.63 E-value=1.1e+02 Score=23.35 Aligned_cols=28 Identities=32% Similarity=0.655 Sum_probs=19.0
Q ss_pred HHHhhhcCCCCCCCcHHHHHHHHHHhhhhh
Q 019056 180 WIAQCYEGKPLFDFDLQRMFRSGLVGFTLH 209 (346)
Q Consensus 180 ~iAQ~ie~k~~~~~D~~Rtlrfal~G~l~~ 209 (346)
.+.+.+|..| ++|-.|.+..++.||++.
T Consensus 13 ~m~~fie~hP--~WDQ~Rl~~aALa~FL~Q 40 (57)
T PF10929_consen 13 AMKDFIETHP--NWDQYRLFQAALAGFLLQ 40 (57)
T ss_pred HHHHHHHcCC--CchHHHHHHHHHHHHHHH
Confidence 3444455443 688888888888888763
No 6
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=22.34 E-value=2e+02 Score=22.27 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=32.5
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHHhhhcCCC
Q 019056 153 IAYEQALKANPVLAKMAISGIVYFIGDWIAQCYEGKP 189 (346)
Q Consensus 153 ~~Y~~~L~~~PLlTKavTSGvL~~lGD~iAQ~ie~k~ 189 (346)
+.....+++|.|+|.-+.-|+++.++-+++-++.+.+
T Consensus 2 e~i~~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~Gr 38 (60)
T PF03818_consen 2 EMIEKVLTKNGLITAFAVVGIIMWVSYWLSKKLTRGR 38 (60)
T ss_pred hHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456789999999999999999999999999987654
No 7
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=21.23 E-value=8.4e+02 Score=25.00 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHHhhhhhc-hhhhHHHHHhhhhc---CC-CCcccchhhhhhhhH
Q 019056 167 KMAISGIVYFIGDWIAQCYEGKPLFDFDLQRMFRSGLVGFTLHG-SLSHYYYKFCEALF---PF-QDWWVVPAKVAFDQT 241 (346)
Q Consensus 167 KavTSGvL~~lGD~iAQ~ie~k~~~~~D~~Rtlrfal~G~l~~G-Pl~H~WY~~Ldrlf---P~-~~~~~vl~KVllDQl 241 (346)
-++..|+..+.+=++||.+-.++ .-+.+++++.+++-.++.| ++.-..+-+.|.++ .. .... -..+--+--.
T Consensus 66 ~~~~~gl~~g~~~liaq~~Ga~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~-~~a~~Yl~i~ 142 (455)
T COG0534 66 IAIFIGLGTGTTVLVAQAIGAGD--RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVL-ELAAEYLRII 142 (455)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHH-HHHHHHHHHH
Confidence 46777888899999999985442 3567888888888666666 55544455555444 22 2211 1122222223
Q ss_pred hHHHHHHHHHHHHHHHhcCCC
Q 019056 242 VWAAVWNSIYFVVLGFLRFES 262 (346)
Q Consensus 242 V~aPi~~~~Ff~~~~lLeG~s 262 (346)
.++-.....++...+++++..
T Consensus 143 ~~~~~~~~~~~~~~~~lr~~G 163 (455)
T COG0534 143 LLGAPFALLSFVLSGILRGLG 163 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 344445556667777777653
No 8
>PLN02953 phosphatidate cytidylyltransferase
Probab=17.00 E-value=1.2e+03 Score=24.43 Aligned_cols=52 Identities=15% Similarity=0.033 Sum_probs=31.5
Q ss_pred ccCcchhhhhhHHHHHHHHhhhhhheeeeeeecccccchhhHHHHHHhhH-HHHHHHHHHHHH
Q 019056 99 VVGDNDKLISRAINATIVLGAGTFAVTRLLTIDHDYWHGWTLYEILRYVP-EHNWIAYEQALK 160 (346)
Q Consensus 99 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~id~~~~~gwt~~eilr~~p-~~lw~~Y~~~L~ 160 (346)
.+++..++..|.+-+++++.++..++ +.-||...-.+--+. ...|+ |-+..+
T Consensus 91 ~~~~~~~l~~RIiSglvl~~l~l~vV---------~~GGw~F~~~va~iv~lg~~E-~frmv~ 143 (403)
T PLN02953 91 KQKKASQLKKRVIFGIGIGLPVGCVV---------LAGGWFFTVALAASVFIGSRE-YFELVR 143 (403)
T ss_pred cccccccHHHHHHHHHHHHHHHHhee---------eeCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34456667899999888877777766 346676644444333 34444 444444
No 9
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=16.46 E-value=4.5e+02 Score=19.32 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHHhhhhhc
Q 019056 165 LAKMAISGIVYFIGDWIAQCYEGKPLFDFDLQRMFRSGLVGFTLHG 210 (346)
Q Consensus 165 lTKavTSGvL~~lGD~iAQ~ie~k~~~~~D~~Rtlrfal~G~l~~G 210 (346)
+++.++..+--++||.++|. .++....-..+++.++..
T Consensus 5 ~a~ilt~~lGt~~~D~l~~~--------lglg~~~~~~~~~~~l~~ 42 (55)
T PF03988_consen 5 IAKILTTTLGTTAGDFLSKT--------LGLGYLISTLIFAALLAV 42 (55)
T ss_pred HHHHHHHHhHHHHHHHHHhc--------cCccHHHHHHHHHHHHHH
Confidence 57889999999999999994 234444444455554433
No 10
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=16.41 E-value=4e+02 Score=26.31 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=35.7
Q ss_pred hCChhHHHHHHHHHHHHH--------------HHHHhhhcCCCCCCCcHHHHHHH-----HHHhhhhhchhhhHHHH
Q 019056 161 ANPVLAKMAISGIVYFIG--------------DWIAQCYEGKPLFDFDLQRMFRS-----GLVGFTLHGSLSHYYYK 218 (346)
Q Consensus 161 ~~PLlTKavTSGvL~~lG--------------D~iAQ~ie~k~~~~~D~~Rtlrf-----al~G~l~~GPl~H~WY~ 218 (346)
.++.+-.++.+|++.|+| |++||.++++. .++..+++-+ .+.++++.+++-+.+|.
T Consensus 110 ~~~~ll~aifgG~l~G~G~glv~r~ggStGGtdIlA~~l~kk~--g~~iG~~ll~vd~~i~~~a~~~~~~~~~~lyt 184 (289)
T COG1284 110 IIDPLLAALFGGLLLGIGLGLVFRHGGSTGGTDILALILNKKF--GISVGKILLLVDGFILLIAALVFGPLPNALYT 184 (289)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHc--CCChhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 377778899999999887 99999998774 3444444221 22333333455555554
Done!