Query 019056
Match_columns 346
No_of_seqs 164 out of 964
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 10:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xrd_A LH-1, light-harvesting 10.4 2.8E+02 0.0095 19.8 3.6 30 192-221 7-42 (52)
2 1p58_D Envelope protein M; fla 7.3 4.2E+02 0.014 20.0 3.7 33 152-185 29-61 (75)
3 2kua_A BCL-2-like protein 10; 5.6 6.2E+02 0.021 21.6 4.4 60 139-208 42-105 (170)
4 4aw6_A CAAX prenyl protease 1 4.8 9.2E+02 0.031 24.0 5.7 50 202-252 131-187 (482)
5 1q9j_A PAPA5, polyketide synth 4.6 6.5E+02 0.022 22.7 4.2 31 126-160 118-148 (422)
6 1l5a_A Amide synthase, VIBH; n 4.6 6.8E+02 0.023 22.8 4.3 33 127-163 121-153 (436)
7 4hw4_A Induced myeloid leukemi 4.5 9.5E+02 0.032 20.1 4.7 16 193-208 89-104 (157)
8 1rh5_B Preprotein translocase 3.9 6.1E+02 0.021 19.0 2.7 26 192-217 31-56 (74)
9 3ech_C 25-MER fragment of prot 3.7 4.4E+02 0.015 15.8 1.4 16 142-157 6-22 (25)
10 2xhg_A Tyrocidine synthetase A 3.7 7.8E+02 0.027 22.7 3.9 32 127-162 142-173 (466)
No 1
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=10.44 E-value=2.8e+02 Score=19.82 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=21.4
Q ss_pred CCcHHHHHHHHHHhhhhhchhhhHH------HHHhh
Q 019056 192 DFDLQRMFRSGLVGFTLHGSLSHYY------YKFCE 221 (346)
Q Consensus 192 ~~D~~Rtlrfal~G~l~~GPl~H~W------Y~~Ld 221 (346)
-+|.+|++--.....+..+-+.|+- |++||
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~ 42 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Confidence 4799999876655555667777775 66666
No 2
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=7.30 E-value=4.2e+02 Score=20.03 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHhhh
Q 019056 152 WIAYEQALKANPVLAKMAISGIVYFIGDWIAQCY 185 (346)
Q Consensus 152 w~~Y~~~L~~~PLlTKavTSGvL~~lGD~iAQ~i 185 (346)
..+-+++.-|||..+-++. .+.+.+|+-..|++
T Consensus 29 l~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrv 61 (75)
T 1p58_D 29 AQRIETWILRHPGFTIMAA-ILAYTIGTTHFQRV 61 (75)
T ss_pred HHHHHHHHHHChHHHHHHH-HHHHHHcCChHHHH
Confidence 4466788899999998888 88889999888874
No 3
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=5.64 E-value=6.2e+02 Score=21.56 Aligned_cols=60 Identities=13% Similarity=-0.049 Sum_probs=35.7
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHhh----hcCCCCCCCcHHHHHHHHHHhhhh
Q 019056 139 TLYEILRYVPEHNWIAYEQALKANPVLAKMAISGIVYFIGDWIAQC----YEGKPLFDFDLQRMFRSGLVGFTL 208 (346)
Q Consensus 139 t~~eilr~~p~~lw~~Y~~~L~~~PLlTKavTSGvL~~lGD~iAQ~----ie~k~~~~~D~~Rtlrfal~G~l~ 208 (346)
...++||++...+-..|.+.++.-.. .--..-+.+.|. ++.. ..++|.|.+.+..||..+
T Consensus 42 ~~~~~Lr~v~~ele~~~~~~f~~~~~--------~~~~a~~~f~~Va~elF~dd--g~iNWGRIVaLfaF~g~L 105 (170)
T 2kua_A 42 VEAALLRSVTRQIQQEHQEFFSSFCE--------SRGNRLELVKQMADKLLSKD--QDFSWSQLVMLLAFAGTL 105 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--------TTSCHHHHHHHHHHHSCCSS--SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC--------CcchHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHH
Confidence 45678888877777776666555431 111112223333 2322 258999999999888764
No 4
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=4.81 E-value=9.2e+02 Score=23.99 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=29.5
Q ss_pred HHHhhhhhchhhhHHHH-HhhhhcCCCC------cccchhhhhhhhHhHHHHHHHHHH
Q 019056 202 GLVGFTLHGSLSHYYYK-FCEALFPFQD------WWVVPAKVAFDQTVWAAVWNSIYF 252 (346)
Q Consensus 202 al~G~l~~GPl~H~WY~-~LdrlfP~~~------~~~vl~KVllDQlV~aPi~~~~Ff 252 (346)
.+++.++.=|+.. |.. .+|+.++.+. +...++..++.+++..|+....++
T Consensus 131 ~l~~~l~~LP~~~-Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ 187 (482)
T 4aw6_A 131 TLFSALAGLPWSL-YNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLY 187 (482)
T ss_dssp HHHHHHHHHHHHH-HHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHH-HHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544445443 323 5788886532 345667788888888887655444
No 5
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=4.63 E-value=6.5e+02 Score=22.69 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=25.0
Q ss_pred eeeeecccccchhhHHHHHHhhHHHHHHHHHHHHH
Q 019056 126 RLLTIDHDYWHGWTLYEILRYVPEHNWIAYEQALK 160 (346)
Q Consensus 126 ~~~~id~~~~~gwt~~eilr~~p~~lw~~Y~~~L~ 160 (346)
=+++++|-+..||+..-+++ ++...|.....
T Consensus 118 l~l~~hH~i~Dg~S~~~l~~----~l~~~Y~~~~~ 148 (422)
T 1q9j_A 118 LTLYLHHCMADGHHGAVLVD----ELFSRYTDAVT 148 (422)
T ss_dssp EEEEEEGGGCCHHHHHHHHH----HHHHHHHHHHH
T ss_pred EEEEeceEEEchhhHHHHHH----HHHHHHHHhhc
Confidence 36899999999999987776 66778887665
No 6
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=4.59 E-value=6.8e+02 Score=22.79 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=26.3
Q ss_pred eeeecccccchhhHHHHHHhhHHHHHHHHHHHHHhCC
Q 019056 127 LLTIDHDYWHGWTLYEILRYVPEHNWIAYEQALKANP 163 (346)
Q Consensus 127 ~~~id~~~~~gwt~~eilr~~p~~lw~~Y~~~L~~~P 163 (346)
+++++|-+..||+..-+++ ++...|.......|
T Consensus 121 ~~~~HH~i~Dg~S~~~l~~----~l~~~Y~~~~~g~~ 153 (436)
T 1l5a_A 121 YTRAHHIVLDGYGMMLFEQ----RLSQHYQSLLSGQT 153 (436)
T ss_dssp EEEEETTTCCHHHHHHHHH----HHHHHHHHHHHTCC
T ss_pred EEeehhheecHhHHHHHHH----HHHHHHHHHhcCCC
Confidence 6889999999999998887 55677887665544
No 7
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=4.45 E-value=9.5e+02 Score=20.07 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=13.8
Q ss_pred CcHHHHHHHHHHhhhh
Q 019056 193 FDLQRMFRSGLVGFTL 208 (346)
Q Consensus 193 ~D~~Rtlrfal~G~l~ 208 (346)
++|.|.+.+..||..+
T Consensus 89 ~NWGRIVaLfaFgg~l 104 (157)
T 4hw4_A 89 TNWGRIVTLISFGAFV 104 (157)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 6999999999888764
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=3.85 E-value=6.1e+02 Score=19.05 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=20.2
Q ss_pred CCcHHHHHHHHHHhhhhhchhhhHHH
Q 019056 192 DFDLQRMFRSGLVGFTLHGSLSHYYY 217 (346)
Q Consensus 192 ~~D~~Rtlrfal~G~l~~GPl~H~WY 217 (346)
.=++.+.++.+..|+++.|-+.+.-+
T Consensus 31 r~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 31 KDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999998888776554
No 9
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=3.72 E-value=4.4e+02 Score=15.80 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=10.9
Q ss_pred HHHHhhHHH-HHHHHHH
Q 019056 142 EILRYVPEH-NWIAYEQ 157 (346)
Q Consensus 142 eilr~~p~~-lw~~Y~~ 157 (346)
|-||++.++ .|..|.+
T Consensus 6 e~lrr~arrnawdly~e 22 (25)
T 3ech_C 6 EQLRRAARRNAWDLYGE 22 (26)
T ss_dssp HHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 667777765 4877753
No 10
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=3.69 E-value=7.8e+02 Score=22.65 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=25.0
Q ss_pred eeeecccccchhhHHHHHHhhHHHHHHHHHHHHHhC
Q 019056 127 LLTIDHDYWHGWTLYEILRYVPEHNWIAYEQALKAN 162 (346)
Q Consensus 127 ~~~id~~~~~gwt~~eilr~~p~~lw~~Y~~~L~~~ 162 (346)
+++++|-+..||++.-+++ ++...|.....-.
T Consensus 142 ~l~~HH~i~Dg~S~~~l~~----el~~~Y~~~~~g~ 173 (466)
T 2xhg_A 142 FLAIHHLVVDGISWRILFE----DLATGYAQALAGQ 173 (466)
T ss_dssp EEEEEGGGCCHHHHHHHHH----HHHHHHHHHHTTC
T ss_pred EEEeeeeeechhhHHHHHH----HHHHHHHHHHcCC
Confidence 5889999999999988777 5667787765433
Done!