Query 019056
Match_columns 346
No_of_seqs 164 out of 964
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 10:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019056.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019056hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 13.8 89 0.0065 20.7 3.6 30 192-221 7-42 (52)
2 d1l5aa1 c.43.1.2 (A:1-174) Vib 12.4 1E+02 0.0074 23.2 4.3 32 127-162 121-152 (174)
3 d1q9ja1 c.43.1.2 (A:1-175) Pol 8.7 1.6E+02 0.012 21.8 4.2 32 126-161 118-149 (175)
4 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 7.5 2.4E+02 0.017 21.8 4.8 30 176-208 68-97 (146)
5 d1xmea1 f.24.1.1 (A:14-562) Ba 6.2 7.3E+02 0.054 22.6 8.5 27 302-328 463-489 (549)
6 d2gena2 a.121.1.1 (A:76-193) P 6.0 4E+02 0.029 17.9 9.3 69 150-224 9-96 (118)
7 d1e58a_ c.60.1.1 (A:) Phosphog 4.8 1.3E+02 0.0095 24.4 1.7 32 126-157 85-116 (247)
8 d1rzhh2 f.23.10.1 (H:11-35) Ph 4.6 87 0.0063 17.8 0.2 15 280-294 6-20 (26)
9 d2vqca1 a.4.5.78 (A:4-73) F-11 4.4 94 0.0068 21.2 0.3 27 176-203 22-48 (70)
10 d2g7ga2 a.121.1.1 (A:74-205) P 4.3 3.3E+02 0.024 19.1 3.6 39 150-188 9-52 (132)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=13.84 E-value=89 Score=20.69 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHhhhhhchhhhHH------HHHhh
Q 019056 192 DFDLQRMFRSGLVGFTLHGSLSHYY------YKFCE 221 (346)
Q Consensus 192 ~~D~~Rtlrfal~G~l~~GPl~H~W------Y~~Ld 221 (346)
-+|.+|++.-.....+..+-+.|+- |++||
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWle 42 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 4899999876666666667777765 66666
No 2
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=12.36 E-value=1e+02 Score=23.18 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=26.2
Q ss_pred eeeecccccchhhHHHHHHhhHHHHHHHHHHHHHhC
Q 019056 127 LLTIDHDYWHGWTLYEILRYVPEHNWIAYEQALKAN 162 (346)
Q Consensus 127 ~~~id~~~~~gwt~~eilr~~p~~lw~~Y~~~L~~~ 162 (346)
+++++|-+..||+...+++ ++...|++.+...
T Consensus 121 ~~~~hHii~Dg~S~~~l~~----el~~~Y~~~~~g~ 152 (174)
T d1l5aa1 121 YTRAHHIVLDGYGMMLFEQ----RLSQHYQSLLSGQ 152 (174)
T ss_dssp EEEEETTTCCHHHHHHHHH----HHHHHHHHHHHTC
T ss_pred eeecccEEEcHhHHHHHHH----HHHHHHHHHhCCC
Confidence 5789999999999998887 5678888766654
No 3
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.65 E-value=1.6e+02 Score=21.85 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=26.0
Q ss_pred eeeeecccccchhhHHHHHHhhHHHHHHHHHHHHHh
Q 019056 126 RLLTIDHDYWHGWTLYEILRYVPEHNWIAYEQALKA 161 (346)
Q Consensus 126 ~~~~id~~~~~gwt~~eilr~~p~~lw~~Y~~~L~~ 161 (346)
=+++++|-+..||++.-+++ ++.+.|.+.+..
T Consensus 118 l~l~~HH~i~Dg~S~~~ll~----el~~~Y~~~~~~ 149 (175)
T d1q9ja1 118 LTLYLHHCMADGHHGAVLVD----ELFSRYTDAVTT 149 (175)
T ss_dssp EEEEEEGGGCCHHHHHHHHH----HHHHHHHHHHHS
T ss_pred EEEEccccccCHhHHHHHHH----HHHHHHHHHHhC
Confidence 35789999999999988877 677888877654
No 4
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=7.52 E-value=2.4e+02 Score=21.80 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=21.4
Q ss_pred HHHHHHHhhhcCCCCCCCcHHHHHHHHHHhhhh
Q 019056 176 FIGDWIAQCYEGKPLFDFDLQRMFRSGLVGFTL 208 (346)
Q Consensus 176 ~lGD~iAQ~ie~k~~~~~D~~Rtlrfal~G~l~ 208 (346)
.++.++.+.++.. .++|.|.+.+..||..+
T Consensus 68 ~f~~V~~elF~DG---~~NWGRIVaLfaFg~~l 97 (146)
T d1k3ka_ 68 QLGLSMLQVSGDG---NMNWGRALAILTFGSFV 97 (146)
T ss_dssp HHHTHHHHHCSSC---SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CCCHHHHHHHHHHHHHH
Confidence 4466666665543 47999999999988754
No 5
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=6.20 E-value=7.3e+02 Score=22.60 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=20.8
Q ss_pred hhhhhHHHHHHHHHHhhccCcchhhhh
Q 019056 302 LLWVDCVELIWVTILSTYSNEKSEARI 328 (346)
Q Consensus 302 vLfvn~V~l~WntyLS~~~n~~~e~r~ 328 (346)
+++...+-+++|.+.+..+.++..+..
T Consensus 463 i~~~g~l~f~~nl~~s~~~~~~~~~~~ 489 (549)
T d1xmea1 463 VLLVALLLFIYGLFSVLLSRERKPELA 489 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 577888999999999998776644433
No 6
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.01 E-value=4e+02 Score=17.92 Aligned_cols=69 Identities=13% Similarity=0.012 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHH-------------------HHHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHHhhhhhc
Q 019056 150 HNWIAYEQALKANPVLAKMAIS-------------------GIVYFIGDWIAQCYEGKPLFDFDLQRMFRSGLVGFTLHG 210 (346)
Q Consensus 150 ~lw~~Y~~~L~~~PLlTKavTS-------------------GvL~~lGD~iAQ~ie~k~~~~~D~~Rtlrfal~G~l~~G 210 (346)
.+...|.+....||-..+.+.. ...-.+.|++.|.++.....+.|..-. ..+ +.|
T Consensus 9 ~~v~~~~~~v~~~p~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~g~~~G~~r~~~~~~~-~~~-----i~G 82 (118)
T d2gena2 9 LLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFREMPDDCF-ASV-----VIG 82 (118)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCHHHH-HHH-----HHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHH-HHH-----HHH
Confidence 5567777888888866554431 233335555555554443333444322 222 346
Q ss_pred hhhhHHHHHhhhhc
Q 019056 211 SLSHYYYKFCEALF 224 (346)
Q Consensus 211 Pl~H~WY~~Ldrlf 224 (346)
|..+....++....
T Consensus 83 ~~~~~~~~wl~~~~ 96 (118)
T d2gena2 83 PAHDLARQWLAGRT 96 (118)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 66665555555443
No 7
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli [TaxId: 562]}
Probab=4.81 E-value=1.3e+02 Score=24.37 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=25.6
Q ss_pred eeeeecccccchhhHHHHHHhhHHHHHHHHHH
Q 019056 126 RLLTIDHDYWHGWTLYEILRYVPEHNWIAYEQ 157 (346)
Q Consensus 126 ~~~~id~~~~~gwt~~eilr~~p~~lw~~Y~~ 157 (346)
++-.+|.|.|.|.+..||...++.....+...
T Consensus 85 ~L~E~~~G~~eG~~~~ei~~~~~~e~~~~~~~ 116 (247)
T d1e58a_ 85 KLNERHYGALQGLNKAETAEKYGDEQVKQWRR 116 (247)
T ss_dssp GGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHH
T ss_pred chhhccccccCCCcHHHHHHHhHHHHHHHHhc
Confidence 57789999999999999999888755444444
No 8
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.59 E-value=87 Score=17.75 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=10.2
Q ss_pred hccchhhHHHhhhhe
Q 019056 280 AGWKLWPFAHLVTYS 294 (346)
Q Consensus 280 asw~vWPpaq~INF~ 294 (346)
+-|.||.+.-++.|+
T Consensus 6 aiw~fw~ffalli~y 20 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYY 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457778777766655
No 9
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=4.37 E-value=94 Score=21.18 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=17.3
Q ss_pred HHHHHHHhhhcCCCCCCCcHHHHHHHHH
Q 019056 176 FIGDWIAQCYEGKPLFDFDLQRMFRSGL 203 (346)
Q Consensus 176 ~lGD~iAQ~ie~k~~~~~D~~Rtlrfal 203 (346)
.+-|++||.--..+ ..++..|++++..
T Consensus 22 ~ledilaqfeis~~-~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVP-SAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHH-HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc-hHhHHHHHHHHHH
Confidence 36799999732221 2477888888753
No 10
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=4.29 E-value=3.3e+02 Score=19.14 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCChhHHHHHHH-----HHHHHHHHHHhhhcCC
Q 019056 150 HNWIAYEQALKANPVLAKMAISG-----IVYFIGDWIAQCYEGK 188 (346)
Q Consensus 150 ~lw~~Y~~~L~~~PLlTKavTSG-----vL~~lGD~iAQ~ie~k 188 (346)
.+...|.+.+.+||.+...+.+. -....-|.+.+.+...
T Consensus 9 ~~a~~~r~~~~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~a 52 (132)
T d2g7ga2 9 EWARSYRAAFSRHPTAIRLLATETVRDPGSLSVYHSAAAGLRGA 52 (132)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHhhcCCCCChhHHHHHHHHHHHHHHC
Confidence 55667788889999998877653 2345555555555543
Done!