BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019057
         (346 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JMW|A Chain A, Structure Of Dna-Binding Domain Of Arabidopsis Gt-1
          Length = 86

 Score = 35.8 bits (81), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 44  RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPV 103
           R   W + E   LI          RRG   G+   S   +  W  +SS  +  G +R P 
Sbjct: 3   RAETWVQDETRSLIM--------FRRG-MDGLFNTSKSNKHLWEQISSKMREKGFDRSPT 53

Query: 104 QCRKRWSNLAGDFKKIKE 121
            C  +W NL  +FKK K 
Sbjct: 54  MCTDKWRNLLKEFKKAKH 71


>pdb|2EBI|A Chain A, Arabidopsis Gt-1 Dna-Binding Domain With T133d
           Phosphomimetic Mutation
          Length = 86

 Score = 34.7 bits (78), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 44  RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPV 103
           R   W + E   LI          RRG   G+   S   +  W  +SS  +  G +R P 
Sbjct: 3   RAETWVQDETRSLIM--------FRRG-MDGLFNTSKSNKHLWEQISSKMREKGFDRSPD 53

Query: 104 QCRKRWSNLAGDFKKIKE 121
            C  +W NL  +FKK K 
Sbjct: 54  MCTDKWRNLLKEFKKAKH 71


>pdb|1T5G|A Chain A, Arginase-F2-L-Arginine Complex
 pdb|1T5G|B Chain B, Arginase-F2-L-Arginine Complex
 pdb|1T5G|C Chain C, Arginase-F2-L-Arginine Complex
 pdb|1T5F|A Chain A, Arginase I-Aoh Complex
 pdb|1T5F|B Chain B, Arginase I-Aoh Complex
 pdb|1T5F|C Chain C, Arginase I-Aoh Complex
          Length = 314

 Score = 33.9 bits (76), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 82  IEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKD-GTESFWVMRND 139
           IE   A  S  C R GV +GP   RK     AG  +K+KE E +V+D G  +F  + ND
Sbjct: 3   IEIIGAPFSKGCPRGGVEKGPAALRK-----AGLVEKLKETEYNVRDHGDLAFVDVPND 56


>pdb|3E78|A Chain A, Structure Determination Of The Cancer-Associated
           Mycoplasma Hyorhinis Protein Mh-P37
 pdb|3E79|A Chain A, Structure Determination Of The Cancer-Associated
           Mycoplasma Hyorhinis Protein Mh-P37
 pdb|3EKI|A Chain A, Structural Insights Of The Mycoplasma Hyorhinis Protein
           Mh-P37: A Putative Thiamine Pyrophosphate Transporter
          Length = 403

 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 291 QLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHAD 326
           +L++ L+ N  ++T  LE   NSF  D+E+ K + D
Sbjct: 129 KLVEFLKNNPGIITPALETTTNSFVFDKEKDKFYVD 164


>pdb|1ZPE|A Chain A, Arginase I Covalently Modified With Butylamine At Q19c
 pdb|1ZPE|B Chain B, Arginase I Covalently Modified With Butylamine At Q19c
 pdb|1ZPE|C Chain C, Arginase I Covalently Modified With Butylamine At Q19c
 pdb|1ZPG|A Chain A, Arginase I Covalently Modified With Propylamine At Q19c
 pdb|1ZPG|B Chain B, Arginase I Covalently Modified With Propylamine At Q19c
 pdb|1ZPG|C Chain C, Arginase I Covalently Modified With Propylamine At Q19c
          Length = 314

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 82  IEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKD-GTESFWVMRND 139
           IE   A  S    R GV +GP   RK     AG  +K+KE E +V+D G  +F  + ND
Sbjct: 3   IEIIGAPFSKGXPRGGVEKGPAALRK-----AGLVEKLKETEYNVRDHGDLAFVDVPND 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,822,801
Number of Sequences: 62578
Number of extensions: 390801
Number of successful extensions: 675
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 5
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)