Query 019057
Match_columns 346
No_of_seqs 141 out of 170
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13837 Myb_DNA-bind_4: Myb/S 99.6 2.2E-16 4.8E-21 124.5 6.3 75 46-127 2-78 (90)
2 KOG4282 Transcription factor G 99.4 9.9E-13 2.1E-17 128.1 12.4 73 45-126 54-126 (345)
3 PF13873 Myb_DNA-bind_5: Myb/S 98.3 2.4E-06 5.2E-11 66.5 6.4 75 44-120 1-76 (78)
4 PF00249 Myb_DNA-binding: Myb- 97.9 2.4E-05 5.3E-10 56.0 5.1 47 46-113 2-48 (48)
5 PF13921 Myb_DNA-bind_6: Myb-l 97.5 0.00023 4.9E-09 52.7 5.0 42 48-112 1-43 (60)
6 smart00717 SANT SANT SWI3, AD 97.3 0.00074 1.6E-08 46.1 5.4 47 46-114 2-48 (49)
7 cd00167 SANT 'SWI3, ADA2, N-Co 96.9 0.0021 4.6E-08 43.2 5.0 45 47-113 1-45 (45)
8 PLN03212 Transcription repress 96.8 0.0017 3.7E-08 62.3 5.0 50 44-114 24-73 (249)
9 PF12776 Myb_DNA-bind_3: Myb/S 96.8 0.0095 2.1E-07 47.4 8.4 73 47-126 1-75 (96)
10 PLN03091 hypothetical protein; 96.3 0.005 1.1E-07 63.4 5.2 52 41-113 10-61 (459)
11 smart00595 MADF subfamily of S 95.4 0.028 6.1E-07 44.3 4.8 38 83-125 27-64 (89)
12 PLN03212 Transcription repress 95.2 0.039 8.4E-07 53.3 6.0 52 42-116 75-126 (249)
13 PLN03091 hypothetical protein; 95.0 0.055 1.2E-06 56.0 6.7 53 43-118 65-117 (459)
14 PF10545 MADF_DNA_bdg: Alcohol 94.0 0.12 2.7E-06 39.4 5.1 40 82-124 25-64 (85)
15 KOG1279 Chromatin remodeling f 90.1 0.39 8.5E-06 50.7 4.7 50 41-113 249-298 (506)
16 KOG0048 Transcription factor, 90.0 0.36 7.8E-06 45.5 4.0 54 43-117 7-61 (238)
17 KOG0051 RNA polymerase I termi 80.1 3.7 7.9E-05 44.4 6.1 69 43-118 434-512 (607)
18 COG5259 RSC8 RSC chromatin rem 75.1 4.8 0.0001 42.5 5.0 46 44-112 278-323 (531)
19 KOG0457 Histone acetyltransfer 66.1 12 0.00026 39.1 5.6 46 45-112 72-117 (438)
20 KOG0051 RNA polymerase I termi 57.8 15 0.00033 39.9 4.8 47 44-114 383-429 (607)
21 KOG0049 Transcription factor, 47.4 25 0.00054 38.9 4.4 63 41-125 356-418 (939)
22 TIGR01557 myb_SHAQKYF myb-like 46.6 44 0.00096 25.3 4.5 44 44-108 2-49 (57)
23 KOG0049 Transcription factor, 46.1 47 0.001 36.9 6.2 55 40-115 248-302 (939)
24 PF09356 Phage_BR0599: Phage c 45.9 9.9 0.00021 30.6 0.9 20 95-114 50-69 (80)
25 PRK13923 putative spore coat p 42.2 59 0.0013 30.1 5.5 59 43-118 3-62 (170)
26 KOG0050 mRNA splicing protein 39.7 46 0.001 35.9 4.9 59 45-125 7-65 (617)
27 KOG0048 Transcription factor, 38.5 81 0.0018 29.8 6.0 50 41-113 58-107 (238)
28 COG4985 ABC-type phosphate tra 37.2 89 0.0019 30.8 6.0 47 285-335 173-226 (289)
29 PF02520 DUF148: Domain of unk 34.8 1.8E+02 0.0038 24.2 6.8 54 288-343 21-74 (113)
30 TIGR02894 DNA_bind_RsfA transc 33.2 86 0.0019 28.9 5.0 60 43-119 2-62 (161)
31 PF09141 Talin_middle: Talin, 33.1 1.2E+02 0.0027 27.8 6.0 45 286-343 88-132 (161)
32 PF12108 SF3a60_bindingd: Spli 32.2 46 0.00099 22.3 2.3 22 105-126 5-26 (28)
33 COG5147 REB1 Myb superfamily p 27.8 61 0.0013 34.7 3.5 101 41-165 68-204 (512)
34 PF10960 DUF2762: Protein of u 25.8 1.9E+02 0.004 23.1 5.1 20 326-345 42-61 (71)
35 PF08158 NUC130_3NT: NUC130/3N 24.0 1.1E+02 0.0025 22.9 3.4 34 283-329 11-44 (52)
No 1
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.65 E-value=2.2e-16 Score=124.46 Aligned_cols=75 Identities=32% Similarity=0.585 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHHH--HhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHHhhh
Q 019057 46 PRWTRQEILVLIQGKRV--AENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWE 123 (346)
Q Consensus 46 p~WT~~EtLvLI~arre--~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVkdwe 123 (346)
.+||.+||++||+++.+ ++..|..++.. .....|+.|++.|..+||.|++.||+.||+||.+.||+++++.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~-------~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~ 74 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKK-------RNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRN 74 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS---------HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccc-------cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999 55556432201 1245899999999999999999999999999999999999998
Q ss_pred hccC
Q 019057 124 SHVK 127 (346)
Q Consensus 124 r~~~ 127 (346)
...+
T Consensus 75 ~~~~ 78 (90)
T PF13837_consen 75 KKSG 78 (90)
T ss_dssp S---
T ss_pred CCCC
Confidence 7653
No 2
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=99.43 E-value=9.9e-13 Score=128.08 Aligned_cols=73 Identities=32% Similarity=0.564 Sum_probs=66.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHHhhhh
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWES 124 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVkdwer 124 (346)
.++|+.+||++||.+|.+++..|..++++ .+.|+.|+..|..+||.|++.||+.||+||.+.||+.+.-..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k---------~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~ 124 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLK---------GPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKE 124 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhc---------ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccC
Confidence 89999999999999999999999877633 459999999999999999999999999999999999998876
Q ss_pred cc
Q 019057 125 HV 126 (346)
Q Consensus 125 ~~ 126 (346)
..
T Consensus 125 ~~ 126 (345)
T KOG4282|consen 125 GS 126 (345)
T ss_pred CC
Confidence 53
No 3
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.26 E-value=2.4e-06 Score=66.47 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCC-CCChHHhhHHHHHHHHHHHHHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGV-NRGPVQCRKRWSNLAGDFKKIK 120 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv-~Rs~~QCr~KWeNLl~dYKkVk 120 (346)
|.++||.+|..+||+.-.....-. .++.... .........|+.|+..+...|. .|++.||+++|.||...-|+..
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il-~~k~~~~-~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~~ 76 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDIL-ENKFSDS-VSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKKL 76 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHH-hcccccH-HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999855543332 2321111 1111246699999999998777 8999999999999998777643
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.89 E-value=2.4e-05 Score=56.04 Aligned_cols=47 Identities=28% Similarity=0.539 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHH
Q 019057 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (346)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (346)
..||.+|...|+++.+.. |. ..|..|+.++- ..|++.||+.+|.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~------g~------------~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKY------GK------------DNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHS------TT------------THHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh------CC------------cHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 589999999999985543 11 15999999997 7899999999999974
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.47 E-value=0.00023 Score=52.70 Aligned_cols=42 Identities=38% Similarity=0.796 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHH-H
Q 019057 48 WTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN-L 112 (346)
Q Consensus 48 WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN-L 112 (346)
||.+|...|+.+.... | ..|..|+..|. +|++.||+.||.+ |
T Consensus 1 WT~eEd~~L~~~~~~~------g-------------~~W~~Ia~~l~----~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY------G-------------NDWKKIAEHLG----NRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHH------T-------------S-HHHHHHHST----TS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH------C-------------cCHHHHHHHHC----cCCHHHHHHHHHHHC
Confidence 9999999999986543 1 17999999984 8999999999999 5
No 6
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.27 E-value=0.00074 Score=46.08 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
..||..|...|+.+.... | ...|..|+.++. .|++.+|+.+|.++..
T Consensus 2 ~~Wt~~E~~~l~~~~~~~------g------------~~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKY------G------------KNNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHH------C------------cCCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 579999999999985433 1 027999999986 8999999999999763
No 7
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=96.93 E-value=0.0021 Score=43.21 Aligned_cols=45 Identities=33% Similarity=0.738 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHH
Q 019057 47 RWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (346)
Q Consensus 47 ~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (346)
.||..|...|+.+-... | ...|..|+..+. .|++.||+.+|.++.
T Consensus 1 ~Wt~eE~~~l~~~~~~~------g------------~~~w~~Ia~~~~----~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKY------G------------KNNWEKIAKELP----GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHH------C------------cCCHHHHHhHcC----CCCHHHHHHHHHHhC
Confidence 49999999999985533 1 027999999985 399999999999873
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.79 E-value=0.0017 Score=62.35 Aligned_cols=50 Identities=30% Similarity=0.546 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
+...||..|=-.|+++.... | ...|..|+.++ |..|+++|||.||.|.+.
T Consensus 24 KRg~WT~EEDe~L~~lV~ky------G------------~~nW~~IAk~~---g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKE------G------------EGRWRSLPKRA---GLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHh------C------------cccHHHHHHhh---hcCCCcchHHHHHHHhhc
Confidence 35679999999998863322 1 12799999764 567999999999999774
No 9
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=96.78 E-value=0.0095 Score=47.41 Aligned_cols=73 Identities=23% Similarity=0.450 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHHhHHhhhccc-CCCCCCCCCCcchHHHHHHHHHh-cCCCCChHHhhHHHHHHHHHHHHHHhhhh
Q 019057 47 RWTRQEILVLIQGKRVAENRVRRGRA-AGMGFGSGQIEPKWASVSSYCKR-HGVNRGPVQCRKRWSNLAGDFKKIKEWES 124 (346)
Q Consensus 47 ~WT~~EtLvLI~arre~e~r~~~g~~-~~~a~~s~q~~~kWe~Vs~~c~~-~Gv~Rs~~QCr~KWeNLl~dYKkVkdwer 124 (346)
+||...+..||++--+.-.. |.+ +...++ ..-|+.|...+.. .|...+..||+.||..|-+.|+-++.-..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~---g~~~~~~~fk----~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~~ 73 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINK---GNRPTNGGFK----KEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELRN 73 (96)
T ss_pred CCChHHHHHHHHHHHHHHHh---CCCCCCCCcC----HHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 69999999999996554333 332 233343 5589999999876 77788999999999999999999998887
Q ss_pred cc
Q 019057 125 HV 126 (346)
Q Consensus 125 ~~ 126 (346)
+.
T Consensus 74 ~s 75 (96)
T PF12776_consen 74 HS 75 (96)
T ss_pred CC
Confidence 65
No 10
>PLN03091 hypothetical protein; Provisional
Probab=96.34 E-value=0.005 Score=63.42 Aligned_cols=52 Identities=29% Similarity=0.491 Sum_probs=39.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHH
Q 019057 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (346)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (346)
.+.|+..||..|=..|+++... + | ...|..|+..+ |..|+++|||+||.|.+
T Consensus 10 qklrKg~WTpEEDe~L~~~V~k----y--G------------~~nWs~IAk~~---g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITK----Y--G------------HGCWSSVPKQA---GLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHH----h--C------------cCCHHHHhhhh---ccCcCcchHhHHHHhcc
Confidence 3456678999999999887432 1 2 12799999764 56899999999999744
No 11
>smart00595 MADF subfamily of SANT domain.
Probab=95.42 E-value=0.028 Score=44.29 Aligned_cols=38 Identities=18% Similarity=0.496 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHHhhhhc
Q 019057 83 EPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESH 125 (346)
Q Consensus 83 ~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVkdwer~ 125 (346)
...|..|+..|.. +..+|+.||.||...|.+...-...
T Consensus 27 ~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~r~~~ 64 (89)
T smart00595 27 RKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELKRLQN 64 (89)
T ss_pred HHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999965 9999999999999999987655443
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.25 E-value=0.039 Score=53.28 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=41.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHH
Q 019057 42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDF 116 (346)
Q Consensus 42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dY 116 (346)
.-....||.+|-..||+..... | .+|..|+.+|- .|+.+||+.+|.++++.+
T Consensus 75 ~I~kgpWT~EED~lLlel~~~~------G-------------nKWs~IAk~Lp----GRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 75 SVKRGGITSDEEDLILRLHRLL------G-------------NRWSLIAGRIP----GRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred hcccCCCChHHHHHHHHHHHhc------c-------------ccHHHHHhhcC----CCCHHHHHHHHHHHHhHH
Confidence 4566899999999998773321 2 28999999994 699999999999988754
No 13
>PLN03091 hypothetical protein; Provisional
Probab=95.02 E-value=0.055 Score=56.02 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKK 118 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKk 118 (346)
-....||.+|-..||+..+.. | .+|..|+.+|. .|+.+||+.+|..+++.|.+
T Consensus 65 IkKgpWT~EED~lLLeL~k~~------G-------------nKWskIAk~LP----GRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 65 LKRGTFSQQEENLIIELHAVL------G-------------NRWSQIAAQLP----GRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred ccCCCCCHHHHHHHHHHHHHh------C-------------cchHHHHHhcC----CCCHHHHHHHHHHHHHHHHH
Confidence 346789999999999885532 2 28999999984 69999999999999986544
No 14
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=94.03 E-value=0.12 Score=39.40 Aligned_cols=40 Identities=23% Similarity=0.482 Sum_probs=34.4
Q ss_pred CcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHHhhhh
Q 019057 82 IEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWES 124 (346)
Q Consensus 82 ~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVkdwer 124 (346)
....|..|+..| |..-+..+|+.+|.+|...|.+.+.-..
T Consensus 25 r~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~~~~~ 64 (85)
T PF10545_consen 25 REEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRRELKKIK 64 (85)
T ss_pred HHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366999999999 4345689999999999999999988876
No 15
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=90.11 E-value=0.39 Score=50.66 Aligned_cols=50 Identities=24% Similarity=0.482 Sum_probs=40.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHH
Q 019057 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (346)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (346)
...-.++||.+||+.|+++.- .| .+.|..|+.++. .|+..||-.|.=.|=
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie----~y---------------~ddW~kVa~hVg----~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIE----MY---------------GDDWNKVADHVG----TKSQEQCILKFLRLP 298 (506)
T ss_pred cccCCCCccHHHHHHHHHHHH----Hh---------------cccHHHHHhccC----CCCHHHHHHHHHhcC
Confidence 445678999999999999732 11 349999999998 899999999886653
No 16
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=89.97 E-value=0.36 Score=45.55 Aligned_cols=54 Identities=30% Similarity=0.521 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHH-HHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN-LAGDFK 117 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN-Ll~dYK 117 (346)
..++.||..|=..||+..+.. |. -.|..|+... |..|.+++||-+|-| |--+.|
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~------G~------------~~W~~i~k~~---gl~R~GKSCRlRW~NyLrP~ik 61 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSF------GK------------HNGTALPKLA---GLRRCGKSCRLRWTNYLRPDLK 61 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHh------CC------------CCcchhhhhc---CCCccchHHHHHhhcccCCCcc
Confidence 346999999999999974422 21 2799888764 558999999999999 444554
No 17
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=80.09 E-value=3.7 Score=44.43 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHH-hhhcccC---------CCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENR-VRRGRAA---------GMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNL 112 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r-~~~g~~~---------~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNL 112 (346)
-....||.+|.--||..-.++-.. ++.-.++ .+.+.+ .=-|-.|++.+. .|+..||+-||..|
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d---~I~Wt~vse~~~----TR~~~qCr~Kw~kl 506 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKD---DINWTLVSEMLG----TRSRIQCRYKWYKL 506 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccC---CcchhhhhHhhc----CCCcchHHHHHHHH
Confidence 466789999999999987655542 1110000 001111 126999999554 89999999999999
Q ss_pred HHHHHH
Q 019057 113 AGDFKK 118 (346)
Q Consensus 113 l~dYKk 118 (346)
+..+=.
T Consensus 507 ~~~~s~ 512 (607)
T KOG0051|consen 507 TTSPSF 512 (607)
T ss_pred HhhHHh
Confidence 987644
No 18
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=75.07 E-value=4.8 Score=42.50 Aligned_cols=46 Identities=28% Similarity=0.578 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNL 112 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNL 112 (346)
+-.+|+++|++.|+++..+ | .+.|..||.+-. +++..||--|+=+|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~----y---------------gDdW~kVA~HVg----tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEM----Y---------------GDDWDKVARHVG----TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHH----h---------------hhhHHHHHHHhC----CCCHHHHHHHHHcC
Confidence 6679999999999998542 2 348999998876 89999997655433
No 19
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=66.14 E-value=12 Score=39.09 Aligned_cols=46 Identities=20% Similarity=0.577 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHH
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNL 112 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNL 112 (346)
.|.||..|-+.||++- + .+. +| -|..||+++- .|+..+|++-..|.
T Consensus 72 ~~~WtadEEilLLea~--~--t~G--------~G------NW~dIA~hIG----tKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAA--E--TYG--------FG------NWQDIADHIG----TKTKEECKEHYLKH 117 (438)
T ss_pred CCCCChHHHHHHHHHH--H--HhC--------CC------cHHHHHHHHc----ccchHHHHHHHHHH
Confidence 4889999999999982 1 221 22 5999999987 89999998876553
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=57.78 E-value=15 Score=39.86 Aligned_cols=47 Identities=26% Similarity=0.531 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
-.+.||..|.-.|-..=.+ .| ..|..|...|. |.|.-|+++|.+.+.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~------~g-------------~~W~~Ig~~lg-----r~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVE------HG-------------NDWKEIGKALG-----RMPMDCRDRWRQYVK 429 (607)
T ss_pred ccCCCCcchHHHHHHHHHH------hc-------------ccHHHHHHHHc-----cCcHHHHHHHHHhhc
Confidence 4578999988777554111 12 27999999987 999999999999876
No 21
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=47.41 E-value=25 Score=38.93 Aligned_cols=63 Identities=30% Similarity=0.550 Sum_probs=45.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHH
Q 019057 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIK 120 (346)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVk 120 (346)
+.-..+.||.+|-+.|+.+-. ++. +..|--|-+.. =+||-.|||++.-|.+..-.|+-
T Consensus 356 Psikhg~wt~~ED~~L~~AV~----~Yg--------------~kdw~k~R~~v----PnRSdsQcR~RY~nvL~~s~K~~ 413 (939)
T KOG0049|consen 356 PSVKHGRWTDQEDVLLVCAVS----RYG--------------AKDWAKVRQAV----PNRSDSQCRERYTNVLNRSAKVE 413 (939)
T ss_pred ccccCCCCCCHHHHHHHHHHH----HhC--------------ccchhhHHHhc----CCccHHHHHHHHHHHHHHhhccC
Confidence 345678999999999998832 221 12565554332 27999999999999999888877
Q ss_pred hhhhc
Q 019057 121 EWESH 125 (346)
Q Consensus 121 dwer~ 125 (346)
.|.-.
T Consensus 414 rW~l~ 418 (939)
T KOG0049|consen 414 RWTLV 418 (939)
T ss_pred ceeec
Confidence 77543
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=46.58 E-value=44 Score=25.31 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchH---HHHHHHHHhcCCCC-ChHHhhHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKW---ASVSSYCKRHGVNR-GPVQCRKR 108 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kW---e~Vs~~c~~~Gv~R-s~~QCr~K 108 (346)
..-.||..|...++.+.... |. ..| +.|++.|. +.| +..||+..
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~------G~------------g~~a~pk~I~~~~~---~~~lT~~qV~SH 49 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKL------GG------------PDWATPKRILELMV---VDGLTRDQVASH 49 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHh------CC------------CcccchHHHHHHcC---CCCCCHHHHHHH
Confidence 34579999999999985543 21 157 88887765 456 88999864
No 23
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=46.06 E-value=47 Score=36.91 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=39.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
.+.-++-.|+..|.--|.++- .-++ ..-|..|+..+ |-+||..||-.|+..-++-
T Consensus 248 ~P~~nk~~WS~EE~E~L~AiA--~A~~----------------~~~W~~IA~~L---gt~RS~yQC~~kF~t~~~~ 302 (939)
T KOG0049|consen 248 NPKWNKEHWSNEEVEKLKALA--EAPK----------------FVSWPMIALNL---GTNRSSYQCMEKFKTEVSQ 302 (939)
T ss_pred CCccchhccChHHHHHHHHHH--hccc----------------cccHHHHHHHh---CCCcchHHHHHHHHHHHHH
Confidence 366778899999887776651 1111 23799999875 6789999998887654443
No 24
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=45.85 E-value=9.9 Score=30.59 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=18.2
Q ss_pred hcCCCCChHHhhHHHHHHHH
Q 019057 95 RHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 95 ~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
..||+++...|+.|+.|+++
T Consensus 50 ~~GCDkt~~tC~~kF~N~~N 69 (80)
T PF09356_consen 50 YPGCDKTFATCRAKFNNALN 69 (80)
T ss_pred EeCCCCCHHHHHHHhCCccc
Confidence 47999999999999999876
No 25
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=42.22 E-value=59 Score=30.09 Aligned_cols=59 Identities=24% Similarity=0.455 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHH-HHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN-LAGDFKK 118 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN-Ll~dYKk 118 (346)
.|..-||..|=+.|.+. .++ ....|. .| -.-.+.|..+|. |++.+|..+|.. +.+.|..
T Consensus 3 ~rqdawt~e~d~llae~--vl~-~i~eg~--------tq-l~afe~~g~~L~-----rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 3 TRQDAWTQERDGLLAEV--VLR-HIREGG--------TQ-LKAFEEVGDALK-----RTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred chhhhhhhHHHHHHHHH--HHH-HHhccc--------hH-HHHHHHHHHHHh-----hhHHHHHhHHHHHHHHHHHH
Confidence 46677999999888544 332 222222 11 235667777776 999999999965 4445543
No 26
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=39.75 E-value=46 Score=35.90 Aligned_cols=59 Identities=25% Similarity=0.514 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHHhhhh
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWES 124 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVkdwer 124 (346)
.+-|+..|--+|=.+ .+ . -| .+.|..|+..+. ..++.||+-+|+-.+.---+.-+|.+
T Consensus 7 ggvwrntEdeilkaa--v~--k--yg------------~nqws~i~sll~----~kt~rqC~~rw~e~ldp~i~~tews~ 64 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAA--VM--K--YG------------KNQWSRIASLLN----RKTARQCKARWEEWLDPAIKKTEWSR 64 (617)
T ss_pred cceecccHHHHHHHH--HH--H--cc------------hHHHHHHHHHHh----hcchhHHHHHHHHHhCHHHhhhhhhh
Confidence 356888887777554 11 1 11 458999999998 46899999999988887777777776
Q ss_pred c
Q 019057 125 H 125 (346)
Q Consensus 125 ~ 125 (346)
.
T Consensus 65 e 65 (617)
T KOG0050|consen 65 E 65 (617)
T ss_pred h
Confidence 4
No 27
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=38.55 E-value=81 Score=29.78 Aligned_cols=50 Identities=12% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHH
Q 019057 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (346)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (346)
+.-..+.||.+|..+||++-+.. | .+|..||.+|- -|+-+..+--|..-+
T Consensus 58 P~ikrg~fT~eEe~~Ii~lH~~~------G-------------NrWs~IA~~LP----GRTDNeIKN~Wnt~l 107 (238)
T KOG0048|consen 58 PDLKRGNFSDEEEDLIIKLHALL------G-------------NRWSLIAGRLP----GRTDNEVKNHWNTHL 107 (238)
T ss_pred CCccCCCCCHHHHHHHHHHHHHH------C-------------cHHHHHHhhCC----CcCHHHHHHHHHHHH
Confidence 44557899999999999984332 2 28999999997 688877776674433
No 28
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=37.18 E-value=89 Score=30.76 Aligned_cols=47 Identities=26% Similarity=0.313 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHh-------hhhhhhhHHHHhhhhhHHHHHHHHH
Q 019057 285 MSNMQYQLIDVLERNGKMLTAQLEAQ-------NNSFQLDREQRKDHADSLVAVLNKL 335 (346)
Q Consensus 285 ~~~lq~qlievL~rn~~ml~aQLeAQ-------n~n~qLdReqrkdq~~sLv~vL~kL 335 (346)
..+|-.|+-++-++--+|++.|||+= -+|-+||-+-+- .+++-++.|
T Consensus 173 v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~----~~~ae~seL 226 (289)
T COG4985 173 VETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQ----HYVAEKSEL 226 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHH----HHHHHHHHH
Confidence 46788999999999999999999992 367788877663 444444444
No 29
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=34.79 E-value=1.8e+02 Score=24.15 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 019057 288 MQYQLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLVAVLNKLADALGRIA 343 (346)
Q Consensus 288 lq~qlievL~rn~~ml~aQLeAQn~n~qLdReqrkdq~~sLv~vL~kLaDAl~rIA 343 (346)
+..+|.+..+.+| |.+++.+=+.+.+-..++-++.+.++|+-|..+=.-|..|.
T Consensus 21 ~~~~l~~Wa~~~~--v~~~~~~f~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~ 74 (113)
T PF02520_consen 21 IEEQLDEWAEKYG--VQDQYNEFKAQVQAQKEEVRKNVTAVISNLSSAFAKLSAIL 74 (113)
T ss_pred HHHHHHHHHHHCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556655 55555554444444444444444444444444444444443
No 30
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.17 E-value=86 Score=28.88 Aligned_cols=60 Identities=25% Similarity=0.493 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH-HHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG-DFKKI 119 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~-dYKkV 119 (346)
.|.--||..|=+.|.+. .+ ..++.|. .| -.-.++|...+. |++--|.=+|...+. .|+.-
T Consensus 2 ~RQDAWT~eeDlLLAEt--VL-rhIReG~--------TQ-L~AFeEvg~~L~-----RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAET--VL-RHIREGS--------TQ-LSAFEEVGRALN-----RTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred ccccccccHHHHHHHHH--HH-HHHhcch--------HH-HHHHHHHHHHHc-----ccHHHhcchHHHHHHHHHHHH
Confidence 35567999999999886 33 2333332 12 346788888885 999999999999654 56543
No 31
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle. It contains a Vinculin binding site (VBS) composed of a hydrophobic surface spanning five turns of helix four. Activation of the VBS causes subsequent recruitment of Vinculin, which enables maturation of small integrin/talin complexes into more stable adhesions. Formation of the complex between VBS and Vinculin requires prior unfolding of this middle domain: once released from the talin hydrophobic core, the VBS helix is then available to induce the 'bundle conversion' conformational change within the vinculin head domain thereby displacing the intramolecular interaction with the vinculin tail, allowing vinculin to bind actin []. ; GO: 0005200 structural constituent of cytoskeleton, 0007016 cytoskeletal anchoring at plasma membrane, 0001726 ruffle, 0005925 focal adhesion; PDB: 1SJ8_A 1T01_B 1SJ7_A 1SYQ_B.
Probab=33.08 E-value=1.2e+02 Score=27.81 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 019057 286 SNMQYQLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLVAVLNKLADALGRIA 343 (346)
Q Consensus 286 ~~lq~qlievL~rn~~ml~aQLeAQn~n~qLdReqrkdq~~sLv~vL~kLaDAl~rIA 343 (346)
++|-++|-|+ -++-|||++.++-++ +.+.|+.+..+|++|+..+.
T Consensus 88 ttIssnl~em-~k~vr~laaL~d~~~------------~~~~Ll~Aar~L~~A~sdll 132 (161)
T PF09141_consen 88 TTISSNLPEM-AKGVRMLAALMDDEG------------DGDKLLDAARKLCGAFSDLL 132 (161)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHTT--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHH-HHHHHHHHHhcCCcc------------cHHHHHHHHHHHHHHHHHHH
Confidence 3576666654 689999999977655 44689999999999987653
No 32
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=32.23 E-value=46 Score=22.26 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhcc
Q 019057 105 CRKRWSNLAGDFKKIKEWESHV 126 (346)
Q Consensus 105 Cr~KWeNLl~dYKkVkdwer~~ 126 (346)
..+-|++....+|.||++.++.
T Consensus 5 ~~d~f~eFY~rlk~Ike~Hrr~ 26 (28)
T PF12108_consen 5 GGDPFSEFYERLKEIKEYHRRY 26 (28)
T ss_dssp S--HHHHHHHHHHHHHHHHHS-
T ss_pred CCChHHHHHHHHHHHHHHHHhC
Confidence 4577999999999999999875
No 33
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=27.79 E-value=61 Score=34.74 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=67.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHH
Q 019057 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIK 120 (346)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVk 120 (346)
+..-..+|+..|--.||.+-.+. ..+|..|+.++-+ |++.||-.+|-+++.+|-+ +
T Consensus 68 p~lk~~~~~~eed~~li~l~~~~-------------------~~~wstia~~~d~----rt~~~~~ery~~~~~~~~s-~ 123 (512)
T COG5147 68 PQLKKKNWSEEEDEQLIDLDKEL-------------------GTQWSTIADYKDR----RTAQQCVERYVNTLEDLSS-T 123 (512)
T ss_pred hhcccccccHHHHHHHHHHHHhc-------------------CchhhhhccccCc----cchHHHHHHHHHHhhhhhc-c
Confidence 33456788999988888874332 2379999998863 9999999999999999888 2
Q ss_pred hhhhccC--------------------------CCCCCcc----------ccCHHHHHhcCCCCCchHHHHHHHHhhhcc
Q 019057 121 EWESHVK--------------------------DGTESFW----------VMRNDLRRERKLPGFFDREVYDILDGAATV 164 (346)
Q Consensus 121 dwer~~~--------------------------~g~~SYW----------~Ms~~eRke~~LP~~Fd~EVydaLd~~~~~ 164 (346)
+|-.... ....+.| ......+++.+++.+++.+.|..|.++..+
T Consensus 124 ~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~rv~~~~vk~~~~~~~~~~~~~~~qem~~~~~~ 203 (512)
T COG5147 124 HDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLRVPRVSKADVKPREKGEENNPDIEDLQEMKELKSA 203 (512)
T ss_pred ccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHHcccchHhhhhHHhhcccccccHHHHHHHhHHHHH
Confidence 2211110 0111222 112233446677789999999999988774
Q ss_pred c
Q 019057 165 A 165 (346)
Q Consensus 165 ~ 165 (346)
.
T Consensus 204 s 204 (512)
T COG5147 204 S 204 (512)
T ss_pred H
Confidence 4
No 34
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=25.84 E-value=1.9e+02 Score=23.13 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHhhhhc
Q 019057 326 DSLVAVLNKLADALGRIADK 345 (346)
Q Consensus 326 ~sLv~vL~kLaDAl~rIADK 345 (346)
+.+..+|.+|+|.+..|.|.
T Consensus 42 ~kyq~~I~~lte~~~~~~~~ 61 (71)
T PF10960_consen 42 EKYQEQIEKLTEKLNVIEEI 61 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888887764
No 35
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=23.96 E-value=1.1e+02 Score=22.89 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=26.9
Q ss_pred hhhhhhHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHhhhhhHHH
Q 019057 283 EEMSNMQYQLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLV 329 (346)
Q Consensus 283 e~~~~lq~qlievL~rn~~ml~aQLeAQn~n~qLdReqrkdq~~sLv 329 (346)
+++.++-.+|+++|+.+.. .|+.|.|+.-+.+||
T Consensus 11 ~~~~~Fp~~L~~lL~~~~~-------------~L~p~lR~~lv~aLi 44 (52)
T PF08158_consen 11 KETKDFPQELIDLLRNHHT-------------VLDPDLRMKLVKALI 44 (52)
T ss_pred HHHHHHHHHHHHHHHhccc-------------cCCHHHHHHHHHHHH
Confidence 4678899999999998875 788999985555554
Done!