Query 019057
Match_columns 346
No_of_seqs 141 out of 170
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.8 4.1E-21 1.4E-25 152.2 7.6 84 42-134 1-84 (86)
2 3sjm_A Telomeric repeat-bindin 98.3 1E-06 3.4E-11 66.7 5.7 52 43-114 9-60 (64)
3 1ity_A TRF1; helix-turn-helix, 98.1 5.1E-06 1.7E-10 62.9 6.8 55 40-115 5-60 (69)
4 1w0t_A Telomeric repeat bindin 98.1 4.5E-06 1.5E-10 60.2 6.1 49 45-114 2-51 (53)
5 2d9a_A B-MYB, MYB-related prot 98.0 6.9E-06 2.4E-10 60.4 5.4 52 41-114 4-55 (60)
6 1guu_A C-MYB, MYB proto-oncoge 98.0 1.1E-05 3.8E-10 57.6 5.7 48 45-114 3-50 (52)
7 1x41_A Transcriptional adaptor 98.0 1.6E-05 5.5E-10 58.8 6.4 51 42-114 5-55 (60)
8 2dim_A Cell division cycle 5-l 97.9 1.2E-05 4.2E-10 60.9 5.4 53 40-114 4-56 (70)
9 2elk_A SPCC24B10.08C protein; 97.9 3.1E-05 1.1E-09 57.0 7.1 48 45-113 9-56 (58)
10 2din_A Cell division cycle 5-l 97.9 3.1E-05 1.1E-09 58.0 6.9 52 43-118 7-58 (66)
11 1gvd_A MYB proto-oncogene prot 97.8 1.4E-05 4.9E-10 57.1 4.3 49 44-114 2-50 (52)
12 2roh_A RTBP1, telomere binding 97.8 6.3E-05 2.2E-09 63.9 8.1 62 36-115 22-83 (122)
13 2yum_A ZZZ3 protein, zinc fing 97.8 4.1E-05 1.4E-09 58.6 6.4 59 40-115 3-61 (75)
14 2cu7_A KIAA1915 protein; nucle 97.8 6.5E-05 2.2E-09 57.3 7.1 53 41-116 5-57 (72)
15 2juh_A Telomere binding protei 97.7 0.0001 3.6E-09 62.5 7.7 59 39-115 11-69 (121)
16 2aje_A Telomere repeat-binding 97.7 4.6E-05 1.6E-09 63.2 5.4 84 38-157 6-89 (105)
17 2yus_A SWI/SNF-related matrix- 97.7 6.8E-05 2.3E-09 58.9 6.1 48 42-112 15-62 (79)
18 2cjj_A Radialis; plant develop 97.6 0.00011 3.7E-09 59.6 6.5 59 45-122 8-66 (93)
19 2ckx_A NGTRF1, telomere bindin 97.6 7.1E-05 2.4E-09 59.5 5.1 51 47-115 2-52 (83)
20 2cqr_A RSGI RUH-043, DNAJ homo 97.5 0.00015 5.1E-09 56.3 5.3 53 44-115 17-69 (73)
21 2llk_A Cyclin-D-binding MYB-li 97.5 0.00026 8.9E-09 55.0 6.6 49 42-114 20-68 (73)
22 2cqq_A RSGI RUH-037, DNAJ homo 97.4 0.00031 1.1E-08 54.4 6.9 51 45-115 8-58 (72)
23 3osg_A MYB21; transcription-DN 97.2 0.00044 1.5E-08 57.8 5.5 51 41-114 7-57 (126)
24 2k9n_A MYB24; R2R3 domain, DNA 97.1 0.00098 3.3E-08 54.1 6.9 49 44-115 52-100 (107)
25 2k9n_A MYB24; R2R3 domain, DNA 97.1 0.00053 1.8E-08 55.7 5.0 47 46-114 2-48 (107)
26 3osg_A MYB21; transcription-DN 97.0 0.00078 2.7E-08 56.2 5.7 51 43-116 60-110 (126)
27 1gv2_A C-MYB, MYB proto-oncoge 97.0 0.00056 1.9E-08 55.0 4.3 49 44-114 3-51 (105)
28 2ltp_A Nuclear receptor corepr 96.0 0.00012 4E-09 58.4 0.0 54 40-116 11-64 (89)
29 1gv2_A C-MYB, MYB proto-oncoge 96.9 0.00095 3.2E-08 53.6 5.0 49 43-114 54-102 (105)
30 1h8a_C AMV V-MYB, MYB transfor 96.7 0.0014 4.8E-08 54.5 4.9 50 43-114 25-74 (128)
31 3zqc_A MYB3; transcription-DNA 96.5 0.0021 7.3E-08 53.8 4.1 50 43-115 52-101 (131)
32 1h8a_C AMV V-MYB, MYB transfor 96.5 0.0024 8.1E-08 53.2 4.3 49 43-114 77-125 (128)
33 3zqc_A MYB3; transcription-DNA 96.3 0.001 3.5E-08 55.8 1.5 48 45-114 2-49 (131)
34 1h89_C C-MYB, MYB proto-oncoge 96.1 0.0056 1.9E-07 52.6 4.9 50 43-114 56-105 (159)
35 1h89_C C-MYB, MYB proto-oncoge 95.7 0.0087 3E-07 51.4 4.4 49 43-114 108-156 (159)
36 1wgx_A KIAA1903 protein; MYB D 95.3 0.013 4.6E-07 45.6 3.8 52 45-115 8-59 (73)
37 2eqr_A N-COR1, N-COR, nuclear 95.0 0.065 2.2E-06 39.5 6.5 49 40-111 7-55 (61)
38 1ign_A Protein (RAP1); RAP1,ye 94.6 0.018 6.1E-07 54.1 3.1 56 43-115 6-61 (246)
39 1x58_A Hypothetical protein 49 94.2 0.15 5.1E-06 38.7 6.8 51 44-114 7-57 (62)
40 2iw5_B Protein corest, REST co 92.6 0.19 6.5E-06 46.9 6.3 46 43-111 131-176 (235)
41 3hm5_A DNA methyltransferase 1 85.9 1.7 5.7E-05 35.2 6.2 56 46-120 31-87 (93)
42 1ug2_A 2610100B20RIK gene prod 82.3 17 0.00057 29.6 10.5 63 38-120 26-88 (95)
43 2xag_B REST corepressor 1; ami 81.7 1.8 6.2E-05 44.1 5.9 44 43-109 378-421 (482)
44 4iej_A DNA methyltransferase 1 66.6 12 0.00041 30.2 5.9 57 46-121 31-88 (93)
45 2yqk_A Arginine-glutamic acid 48.6 35 0.0012 24.9 5.3 45 40-107 4-49 (63)
46 1fex_A TRF2-interacting telome 40.6 26 0.00089 25.5 3.5 53 46-112 3-56 (59)
47 2lr8_A CAsp8-associated protei 45.2 6.4 0.00022 30.4 0.0 56 44-120 13-68 (70)
48 4eef_G F-HB80.4, designed hema 35.0 2.4 8.1E-05 33.2 -3.0 45 45-108 20-64 (74)
49 4a69_C Nuclear receptor corepr 26.9 60 0.0021 25.6 3.8 42 43-107 41-82 (94)
50 2c9l_Y EB1, zebra, BZLF1 trans 24.1 43 0.0015 24.9 2.2 22 103-124 14-35 (63)
51 4b4c_A Chromodomain-helicase-D 23.5 1.3E+02 0.0046 25.9 5.9 67 41-125 3-70 (211)
52 2dt7_A Splicing factor 3A subu 22.2 58 0.002 22.0 2.5 21 108-128 11-31 (38)
53 2kwv_A RAD30 homolog B, DNA po 22.1 9.3 0.00032 27.5 -1.6 16 144-159 10-25 (48)
54 2jr2_A UPF0352 protein CPS_261 21.5 1.9E+02 0.0067 22.5 5.6 47 285-332 12-64 (76)
55 1ign_A Protein (RAP1); RAP1,ye 21.1 2.2E+02 0.0076 26.6 7.0 36 84-124 172-207 (246)
56 2crg_A Metastasis associated p 20.4 1.8E+02 0.006 21.6 5.1 43 42-107 5-48 (70)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.83 E-value=4.1e-21 Score=152.23 Aligned_cols=84 Identities=25% Similarity=0.495 Sum_probs=73.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHHh
Q 019057 42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKE 121 (346)
Q Consensus 42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVkd 121 (346)
++|.++||.+||++||+++++++.+|..+.+ ...+|++||+.|..+||+||+.||+.||+||.+.||+|++
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~---------~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKS---------NKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSC---------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHcccc---------chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999876541 3679999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCcc
Q 019057 122 WESHVKDGTESFW 134 (346)
Q Consensus 122 wer~~~~g~~SYW 134 (346)
+++.++.+.-+||
T Consensus 72 ~~~~sG~~~~~yf 84 (86)
T 2ebi_A 72 HDRGNGSAKMSYY 84 (86)
T ss_dssp CCCCCCCCCCCCC
T ss_pred hcccCCCCCCCCC
Confidence 9987644444555
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.28 E-value=1e-06 Score=66.69 Aligned_cols=52 Identities=27% Similarity=0.500 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
.+...||.+|-..|+++-... |. -.|..|+.++-- ..|++.||++||.||++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~------G~------------~~W~~Ia~~~~~--~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKY------GE------------GNWAAISKNYPF--VNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHH------CT------------TCHHHHHHHSCC--SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHcc------CC------------CchHHHHhhcCC--CCCCHHHHHHHHHHHhc
Confidence 345679999999999984422 21 179999987521 15999999999999975
No 3
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.13 E-value=5.1e-06 Score=62.93 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=43.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCC-CCChHHhhHHHHHHHHH
Q 019057 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGV-NRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv-~Rs~~QCr~KWeNLl~d 115 (346)
.++.+...||..|-..|+++-... |. .+|..|+.++. + .|+++||+.+|.|++.-
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~------G~------------~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKY------GE------------GNWSKILLHYK---FNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHH------CS------------SCHHHHHHHSC---CSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH------CC------------CcHHHHHHHcC---cCCCCHHHHHHHHHHHcCC
Confidence 345667889999999999984422 21 28999999983 4 79999999999999863
No 4
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.13 E-value=4.5e-06 Score=60.19 Aligned_cols=49 Identities=29% Similarity=0.475 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCC-CCChHHhhHHHHHHHH
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGV-NRGPVQCRKRWSNLAG 114 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv-~Rs~~QCr~KWeNLl~ 114 (346)
...||..|-..|+++-... | ...|..|+.++. + .|++.||+++|.||++
T Consensus 2 r~~WT~eEd~~L~~~v~~~------G------------~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKY------G------------EGNWSKILLHYK---FNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHH------C------------TTCHHHHHHHSC---CSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------C------------cCCHHHHHHHcC---CCCCCHHHHHHHHHHHHc
Confidence 4689999999999984432 2 127999999973 4 5999999999999975
No 5
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.02 E-value=6.9e-06 Score=60.43 Aligned_cols=52 Identities=27% Similarity=0.430 Sum_probs=41.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
+......||.+|-..|+++.... | ..+|..|+.+|- .|++.||+.+|.|++.
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~------G------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQF------G------------QQDWKFLASHFP----NRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHT------C------------TTCHHHHHHHCS----SSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh------C------------CCCHHHHHHHcc----CCCHHHHHHHHHHHcC
Confidence 44566799999999999984432 2 127999999984 5999999999999764
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.98 E-value=1.1e-05 Score=57.59 Aligned_cols=48 Identities=33% Similarity=0.654 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
...||.+|-..|+++.... |. ..|..||.+|- .|++.||+.+|.|++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~------G~------------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN------GT------------DDWKVIANYLP----NRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH------CS------------SCHHHHHHTST----TCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHh------CC------------CCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 5789999999999985432 21 27999999984 6999999999999874
No 7
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.95 E-value=1.6e-05 Score=58.78 Aligned_cols=51 Identities=22% Similarity=0.424 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
.-....||.+|-..|+++-... | ...|..||.+|- .|++.||+.+|.|++.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~------G------------~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDC------G------------FGNWQDVANQMC----TKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHT------C------------TTCHHHHHHHHT----TSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------C------------cCcHHHHHHHhC----CCCHHHHHHHHHHHcc
Confidence 3455689999999999984321 2 127999999994 5999999999999764
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=1.2e-05 Score=60.89 Aligned_cols=53 Identities=19% Similarity=0.411 Sum_probs=42.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
++..+...||..|-..|+.+.... | ...|..|+.+|- .|+++||+.+|.|.+.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~------G------------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKY------G------------KNQWSRIASLLH----RKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHT------C------------SSCHHHHHHHST----TCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH------C------------cCCHHHHHHHhc----CCCHHHHHHHHHHHcC
Confidence 345667899999999999884421 2 128999999985 7999999999999765
No 9
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.90 E-value=3.1e-05 Score=57.03 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHH
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (346)
...||.+|-..|+++-... | ...|..||.+|- ..|++.||+.+|.|+.
T Consensus 9 ~~~WT~eED~~L~~~v~~~------G------------~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETL------G------------LGNWADIADYVG---NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT------T------------TTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------C------------cCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence 4569999999999984322 2 127999999983 3699999999999864
No 10
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=3.1e-05 Score=58.02 Aligned_cols=52 Identities=19% Similarity=0.460 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKK 118 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKk 118 (346)
.....||..|-..|+++... + | .+|..||. +- | |++.||+.+|.+++..-.+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~----~--g-------------~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKL----M--P-------------TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHH----C--T-------------TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----c--C-------------CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhc
Confidence 45568999999999998221 1 1 28999999 53 4 9999999999999986544
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.84 E-value=1.4e-05 Score=57.09 Aligned_cols=49 Identities=31% Similarity=0.507 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
+...||.+|-..|+++.... |. ..|..|+.+|- .|+++||+.+|.|.+.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~------G~------------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKY------GP------------KRWSVIAKHLK----GRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHH------CT------------TCHHHHHTTST----TCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHH------Cc------------ChHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 35789999999999985432 21 16999999984 6999999999999763
No 12
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.79 E-value=6.3e-05 Score=63.95 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 36 GDDGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 36 g~~~~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
....+++.....||..|...|++.-... |. -+|..|+......=-.|+.+||++||.||++.
T Consensus 22 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~------G~------------g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 22 RPDFGQRRIRRPFTVAEVELLVEAVEHL------GT------------GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCCCCCHHHHHHHHHHHHHH------SS------------SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHHHH------CC------------CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3445566677899999999999984432 21 18999999764311379999999999999873
No 13
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=4.1e-05 Score=58.59 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=42.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
.+......||..|-..|+++-... ..+. . ...+|..||.+|- .|+..||+.+|.|++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~----g~~~-------~--~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKY----PPEE-------V--ESRRWQKIADELG----NRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHS----CCCS-------C--HHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHh----CCCC-------C--CcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 344556789999999999984322 1100 0 0248999999995 59999999999887753
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.77 E-value=6.5e-05 Score=57.33 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=42.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHH
Q 019057 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDF 116 (346)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dY 116 (346)
+......||..|-..|+++-... | .+|..|+.+|- .|+..||+.+|.+++...
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~------G-------------~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKF------G-------------RRWTKISKLIG----SRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHT------C-------------SCHHHHHHHHS----SSCHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHcC----CCCHHHHHHHHHHHHHHH
Confidence 34556789999999999974432 2 28999999885 699999999999988753
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.68 E-value=0.0001 Score=62.51 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 39 GCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 39 ~~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
..++.....||..|...||+.-... |. -+|..|+......--.|+.+||++||.||+..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~------G~------------G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHL------GT------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHH------GG------------GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHH------CC------------CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3456667799999999999985432 21 18999999875422379999999999999974
No 16
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.67 E-value=4.6e-05 Score=63.20 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHH
Q 019057 38 DGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFK 117 (346)
Q Consensus 38 ~~~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYK 117 (346)
...++.....||..|...|++.-... |. -+|..|+..+...=-.|+.+||++||.||++.-.
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~------G~------------g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKL------GT------------GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHH------CS------------SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHh------CC------------CChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34566777899999999999984432 21 1899999854211137999999999999997311
Q ss_pred HHHhhhhccCCCCCCccccCHHHHHhcCCCCCchHHHHHH
Q 019057 118 KIKEWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYDI 157 (346)
Q Consensus 118 kVkdwer~~~~g~~SYW~Ms~~eRke~~LP~~Fd~EVyda 157 (346)
+++..|+..-+|..|-..|-++
T Consensus 68 ------------------~~p~~~rg~~~P~~~l~rv~~~ 89 (105)
T 2aje_A 68 ------------------ISPQQRRGEPVPQELLNRVLNA 89 (105)
T ss_dssp ------------------CCTTTTTCCSCCCHHHHHHHHH
T ss_pred ------------------CCcccccCCCCCHHHHHHHHHH
Confidence 1222355677888777766663
No 17
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.67 E-value=6.8e-05 Score=58.90 Aligned_cols=48 Identities=27% Similarity=0.455 Sum_probs=39.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHH
Q 019057 42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNL 112 (346)
Q Consensus 42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNL 112 (346)
......||.+|.+.|+++... | | ..|..|+.++- .|++.||+.+|.+|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~----~--G-------------~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEM----Y--K-------------DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHH----S--S-------------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHH----h--C-------------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 344679999999999998432 1 1 17999999985 69999999999987
No 18
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.61 E-value=0.00011 Score=59.65 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHHhh
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEW 122 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVkdw 122 (346)
...||..|-..|+++-... ..+ . ..+|..||.++- .|+.+||+.+|.+|+.+.+.|...
T Consensus 8 ~~~WT~eEd~~L~~al~~~----~~~--------~---~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVY----DKD--------T---PDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHS----CTT--------C---TTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHc----CCC--------C---CchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhcC
Confidence 4579999999999985432 111 1 249999999985 499999999999999998877544
No 19
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.59 E-value=7.1e-05 Score=59.51 Aligned_cols=51 Identities=18% Similarity=0.369 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 47 RWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 47 ~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
.||..|...|++.-... |. -+|..|+..-...=-.|+.+||++||.||++.
T Consensus 2 ~WT~eEd~~L~~gv~k~------G~------------g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL------GT------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHH------CS------------SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH------CC------------CCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 69999999999984432 21 17999998622111279999999999999873
No 20
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.46 E-value=0.00015 Score=56.33 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
....||..|-..|+++-... ..+ ...+|..||.++- .|+.+||+.+|.+|+.+
T Consensus 17 ~~~~WT~eEd~~L~~al~~~----g~~-----------~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQY----PRG-----------SSDCWDKIARCVP----SKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHS----CSS-----------SHHHHHHHGGGCS----SSCHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHc----CCC-----------CCchHHHHHHHcC----CCCHHHHHHHHHHHHHc
Confidence 45679999999999985432 111 1359999999985 59999999999999875
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.46 E-value=0.00026 Score=55.04 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=39.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
.-....||.+|-..||++..+. | .+|..||.+| .|+.+||+.+|..|..
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~------G-------------~kW~~IA~~l-----gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKH------G-------------NDWATIGAAL-----GRSASSVKDRCRLMKD 68 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHH------S-------------SCHHHHHHHH-----TSCHHHHHHHHHHCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------C-------------CCHHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence 4456789999999999985432 2 2799999999 4999999999998754
No 22
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.45 E-value=0.00031 Score=54.38 Aligned_cols=51 Identities=18% Similarity=0.434 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
.+.||..|-..|+++-. .|-.+. ..+|+.|+.++ | |+..||+.+|..|..+
T Consensus 8 ~~~WT~eE~k~fe~al~----~~p~~t-----------~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMV----KFPGGT-----------PGRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHH----HSCTTC-----------TTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHH----HCCCCC-----------CcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 56799999999999854 222121 24999999998 4 9999999999999877
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.19 E-value=0.00044 Score=57.78 Aligned_cols=51 Identities=29% Similarity=0.551 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
+..+...||..|-..|+.+.... | . .|..|+.+|- .|++.||+++|.|.+.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~------G------------~-~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQH------G------------S-DWKMIAATFP----NRNARQCRDRWKNYLA 57 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHH------T------------T-CHHHHHHTCT----TCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh------C------------C-CHHHHHHHcC----CCCHHHHHHHHhhhcc
Confidence 45567789999999999885432 2 1 7999999874 6999999999999763
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.13 E-value=0.00098 Score=54.05 Aligned_cols=49 Identities=35% Similarity=0.628 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
....||.+|-..|+.+.... | .+|..|+.+|- .|+.+||+.+|.+|+..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEY------G-------------PKWNKISKFLK----NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHT------C-------------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHh------C-------------cCHHHHHHHCC----CCCHHHHHHHHHHHHhh
Confidence 45789999999999984432 2 28999999884 69999999999999875
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.09 E-value=0.00053 Score=55.66 Aligned_cols=47 Identities=34% Similarity=0.569 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
..||..|-..|+.+.... |. ..|..|+.+|- .|++.||+.+|.|.+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~------g~------------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY------GA------------KDWIRISQLMI----TRNPRQCRERWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH------CS------------SCHHHHHHHTT----TSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHH------CC------------CCHHHHhhhcC----CCCHHHHHHHHHHHHc
Confidence 579999999999985432 21 27999999985 6999999999999764
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.05 E-value=0.00078 Score=56.21 Aligned_cols=51 Identities=22% Similarity=0.536 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDF 116 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dY 116 (346)
.....||..|-..|+++..+. | .+|..|+.++- .|+..||+.+|.+|++.+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEY------G-------------RQWAIIAKFFP----GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------C-------------SCHHHHHTTST----TCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHcC----CCCHHHHHHHHHHHHHhc
Confidence 345689999999999985443 2 17999998764 699999999999998753
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.00 E-value=0.00056 Score=54.96 Aligned_cols=49 Identities=29% Similarity=0.492 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
....||..|-..|+.+.... |. ..|..|+.+|- .|++.||+.+|.|.+.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~------g~------------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKY------GP------------KRWSVIAKHLK----GRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------CT------------TCHHHHHTTST----TCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHh------CC------------CcHHHHhhhhc----CCCHHHHHHHHHhccC
Confidence 45789999999999884322 21 16999999884 6999999999999753
No 28
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.02 E-value=0.00012 Score=58.39 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=42.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHH
Q 019057 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDF 116 (346)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dY 116 (346)
.+.-....||.+|-..||++.... | .+|..||.+|- .|+..||+.+|.|++..+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~------G-------------~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEH------G-------------RNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 344456789999999999984332 2 27999999985 699999999999988764
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.92 E-value=0.00095 Score=53.59 Aligned_cols=49 Identities=18% Similarity=0.463 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
-....||..|-..|+.+.... | .+|..|+.++- .|+..||+.+|.+|++
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH------S-------------SCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred ccccCCCHHHHHHHHHHHHHh------C-------------CCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 346789999999999985432 2 27999998763 5999999999999876
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.75 E-value=0.0014 Score=54.54 Aligned_cols=50 Identities=28% Similarity=0.519 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
.....||..|-..|+.+.... | ...|..|+.+|- .|++.||+.+|.|++.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~------g------------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKY------G------------PKRWSDIAKHLK----GRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHT------C------------SCCHHHHHHHSS----SCCHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHH------C------------CCCHHHHHHHhc----CCcHHHHHHHHHHhcc
Confidence 345789999999999874321 1 126999999984 6999999999999764
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.47 E-value=0.0021 Score=53.81 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
.....||..|-..|+.+.... | .+|..|+.+|- .|+.+||+.+|.+++..
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKL------G-------------SKWSVIAKLIP----GRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHS------C-------------SCHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred ccCCCCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 345689999999999874322 2 27999998764 69999999999998874
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.45 E-value=0.0024 Score=53.16 Aligned_cols=49 Identities=18% Similarity=0.470 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
-....||.+|-..|+++.... | .+|..|+.++- .|+..||+.+|.+|++
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------C-------------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred cccccCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 345789999999999985432 2 27999998763 6999999999999886
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.35 E-value=0.001 Score=55.81 Aligned_cols=48 Identities=29% Similarity=0.548 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
.+.||..|-..|+.+.... | ...|..|+.+|- .|++.||+++|.|.+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~------g------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKEN------G------------PQNWPRITSFLP----NRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHH------C------------SCCGGGGTTSCT----TSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHh------C------------cCCHHHHHHHHC----CCCHHHHHHHHhhccC
Confidence 4679999999999874422 2 127999998884 6999999999999774
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.09 E-value=0.0056 Score=52.59 Aligned_cols=50 Identities=28% Similarity=0.467 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
.....||..|-..|+.+.... |. ..|..|+.+|- .|++.||+.+|.|++.
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~------g~------------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKY------GP------------KRWSVIAKHLK----GRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------CS------------CCHHHHHHTST----TCCHHHHHHHHHHTTC
T ss_pred cCCCCCChHHHHHHHHHHHHh------Cc------------ccHHHHHHHcC----CCCHHHHHHHHHHHhC
Confidence 356789999999999885432 21 16999999884 6999999999999763
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.71 E-value=0.0087 Score=51.40 Aligned_cols=49 Identities=18% Similarity=0.463 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
-....||..|-..|+++.... | .+|..|+.++- .|+.+||+.+|..|++
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~------g-------------~~W~~Ia~~l~----gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 156 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------C-------------SCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred ccccCCChHHHHHHHHHHHHH------C-------------CCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 456789999999999985532 2 28999998763 6999999999999875
No 36
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.35 E-value=0.013 Score=45.59 Aligned_cols=52 Identities=15% Similarity=0.350 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
...||..|...|.++..... .+ . ..+|+.|++++- .|+..+|+.+|.-|...
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~----~~--------t---p~rWe~IA~~V~----gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLP----KH--------K---PGFWSEVAAAVG----SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSC----SS--------S---SSHHHHHHHHTT----TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCC----CC--------C---ccHHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 35799999999999854321 11 1 249999999885 39999999999988544
No 37
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.99 E-value=0.065 Score=39.50 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=38.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHH
Q 019057 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN 111 (346)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN 111 (346)
..++....||.+|...|+++.... |+ .|..|+.++- .|+..||...|-.
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~------gk-------------~w~~Ia~~l~----~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQH------PK-------------NFGLIASYLE----RKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHS------TT-------------CHHHHHHHCT----TSCHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHh------CC-------------CHHHHHHHcC----CCCHHHHHHHHHH
Confidence 344677999999999999984432 22 7999998775 6999999988753
No 38
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=94.57 E-value=0.018 Score=54.09 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (346)
-....||..|-..||++-+..-.+ +.+ ...|..||.+|- .|+.+||+.+|.+++..
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~-----r~g--------hk~W~~IAk~Lp----GRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTR-----RTT--------HTLYDEISHYVP----NHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGG-----TTC--------SHHHHHHTTTST----TSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcC-----ccc--------cccHHHHHHHcC----CCCHHHHHHHHHHHHhh
Confidence 345589999999999985543111 010 224999999876 69999999999997753
No 39
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=94.17 E-value=0.15 Score=38.67 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (346)
....||..|...|++.-+.. | . +|..|...-. .=-.|+...-++||.||++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~------G------------~-~W~~I~~~y~-f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTM------G------------N-HWNSILWSFP-FQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHH------C------------S-CHHHHHHHSC-CCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH------h------------H-hHHHHHHhCC-CccCcccchHHHHHHHHHh
Confidence 45689999999999984432 2 2 8999996432 1227999999999999986
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=92.58 E-value=0.19 Score=46.90 Aligned_cols=46 Identities=30% Similarity=0.475 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN 111 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN 111 (346)
....+||.+|.+.|+++-+.. |+ .|..|+..+. .|+..||+.-|-|
T Consensus 131 k~s~~WTeEE~~lFleAl~kY------GK-------------DW~~IAk~Vg----TKT~~QcKnfY~~ 176 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKY------GR-------------DFQAISDVIG----NKSVVQVKNFFVN 176 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHH------SS-------------CHHHHHHHHS----SCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH------Cc-------------CHHHHHHHcC----CCCHHHHHHHHHH
Confidence 456799999999999984432 32 6999999975 6999999998853
No 41
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=85.93 E-value=1.7 Score=35.19 Aligned_cols=56 Identities=13% Similarity=0.307 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCC-CCChHHhhHHHHHHHHHHHHHH
Q 019057 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGV-NRGPVQCRKRWSNLAGDFKKIK 120 (346)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv-~Rs~~QCr~KWeNLl~dYKkVk 120 (346)
+.||..||.-|+++-+.- ..+|-.|++...-.++ .||..+-+.++-.+++...+.+
T Consensus 31 ~~WTkEETd~Lf~L~~~f-------------------dlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRF-------------------DLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHT-------------------TTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh-------------------CCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999983322 2389999999865553 6999999999999999887776
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=82.29 E-value=17 Score=29.59 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHH
Q 019057 38 DGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFK 117 (346)
Q Consensus 38 ~~~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYK 117 (346)
-+......--||+.|=.+++.+.++. |. + ...|..|+..|. +|+++|-..|+.-|++=|.
T Consensus 26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~------G~-------s---~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 26 VSSTGEKVVLWTREADRVILTMCQEQ------GA-------Q---PHTFSVISQQLG----NKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHT------TS-------C---TTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEeccccCHHHHHHHHhc------CC-------C---hhHHHHHHHHHc----cCCHHHHHHHHHHHHHHHH
Confidence 45566677899999988888875432 21 1 348999999997 7999999999999999988
Q ss_pred HHH
Q 019057 118 KIK 120 (346)
Q Consensus 118 kVk 120 (346)
+-.
T Consensus 86 ~~~ 88 (95)
T 1ug2_A 86 TAC 88 (95)
T ss_dssp HCS
T ss_pred HHh
Confidence 743
No 43
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=81.72 E-value=1.8 Score=44.10 Aligned_cols=44 Identities=30% Similarity=0.484 Sum_probs=35.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRW 109 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KW 109 (346)
....+||.+|++.|+++.+. | |+ .|..|+..+. .|+..||+.-+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~----y--Gk-------------dw~~IA~~Vg----TKT~~Qvk~fy 421 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRK----Y--GR-------------DFQAISDVIG----NKSVVQVKNFF 421 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHH----H--TT-------------CHHHHHHHHS----SCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHH----H--Cc-------------CHHHHHHHhC----CCCHHHHHHHH
Confidence 45789999999999998543 2 32 6999999976 79999999744
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=66.63 E-value=12 Score=30.23 Aligned_cols=57 Identities=12% Similarity=0.267 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhc-CCCCChHHhhHHHHHHHHHHHHHHh
Q 019057 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRH-GVNRGPVQCRKRWSNLAGDFKKIKE 121 (346)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~-Gv~Rs~~QCr~KWeNLl~dYKkVkd 121 (346)
+.||..||.-|..+=+.- ..+|-.|.++-.-. ...|+..+-+.++-.++...-+++.
T Consensus 31 ~~WT~eETd~LfdLc~~f-------------------dlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRF-------------------DLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHT-------------------TTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHc-------------------CCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 689999999999983322 34899999986433 3479999999999999988777764
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.57 E-value=35 Score=24.92 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=31.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHH-HHhcCCCCChHHhhH
Q 019057 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSY-CKRHGVNRGPVQCRK 107 (346)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~-c~~~Gv~Rs~~QCr~ 107 (346)
.++...+.||.+|...+.++-... |+ .|..|+.. +. .|+..||-.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~y------GK-------------df~~I~~~~v~----~Kt~~~~v~ 49 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQY------GK-------------NFFRIRKELLP----NKETGELIT 49 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHT------CS-------------CHHHHHHHSCT----TSCHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHh------Cc-------------cHHHHHHHHcC----CCcHHHHHH
Confidence 345556899999999988873321 22 59999874 33 699999953
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=40.62 E-value=26 Score=25.51 Aligned_cols=53 Identities=8% Similarity=0.124 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHH-HHHhcCCCCChHHhhHHHHHH
Q 019057 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSS-YCKRHGVNRGPVQCRKRWSNL 112 (346)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~-~c~~~Gv~Rs~~QCr~KWeNL 112 (346)
-.+|.+|=.+|+..-.+.... .+. ..+ ...|+.+++ .+ -.|+..+||++|-+=
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~--~~~----~~G----n~iwk~la~~~~----~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARS--PSS----VTG----NALWKAMEKSSL----TQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCS--TTT----TTS----SHHHHHHHHSCS----SSCCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccc--cCC----Ccc----HHHHHHHHHhHC----CCCCHHHHHHHHHHH
Confidence 468999999999985544321 111 111 459999998 43 379999999999763
No 47
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=45.25 E-value=6.4 Score=30.43 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHH
Q 019057 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIK 120 (346)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVk 120 (346)
..--||+.|=.+++.+-++ +|. + ...|..||..+ +|+++|-..+..-|+.=|++-+
T Consensus 13 ~vvlWTReeDR~IL~~cq~------~G~-------s---~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQK------RGP-------S---SKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 3456999888777765221 121 1 34899999877 4999999999999999998755
No 48
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=35.03 E-value=2.4 Score=33.16 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHH
Q 019057 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKR 108 (346)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~K 108 (346)
...||..|-..|-++-.. |-.+ . ..+|+.|++.+- .|+..+|+..
T Consensus 20 s~~WT~eE~K~FE~ALa~----yp~~--------t---pdRWekIA~~Vp----GKT~eEVk~h 64 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSF----TNKD--------T---PDRWKKVAQYVK----GRTPEEVKKH 64 (74)
T ss_dssp --CCCTTHHHHHHHHTSS----SCSS--------C---CSSSTTTGGGSC----SSCHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHH----CCCC--------C---CcHHHHHHHHcC----CCCHHHHHHH
Confidence 457999999999887332 1111 1 359999998875 3999999754
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=26.91 E-value=60 Score=25.60 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=31.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhH
Q 019057 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRK 107 (346)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~ 107 (346)
+....||.+|.-.+.++.... |+ .|-.|+.++. .|+..||-.
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~------gK-------------~F~~Ia~~l~----~Kt~~~cV~ 82 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQH------PK-------------NFGLIASFLE----RKTVAECVL 82 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHS------TT-------------CHHHHHHTCT----TCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHc------CC-------------CHHHHHHHcC----CCCHHHHHH
Confidence 456889999999888873321 22 6999987764 799999963
No 50
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=24.05 E-value=43 Score=24.86 Aligned_cols=22 Identities=14% Similarity=0.376 Sum_probs=18.6
Q ss_pred HHhhHHHHHHHHHHHHHHhhhh
Q 019057 103 VQCRKRWSNLAGDFKKIKEWES 124 (346)
Q Consensus 103 ~QCr~KWeNLl~dYKkVkdwer 124 (346)
-.||-|+.||+..|+.|-.-..
T Consensus 14 rk~rakfkn~lqh~r~vaaaks 35 (63)
T 2c9l_Y 14 RKSRAKFKQLLQHYREVAAAKS 35 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4699999999999999876544
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=23.52 E-value=1.3e+02 Score=25.91 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=40.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHH-H
Q 019057 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKK-I 119 (346)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKk-V 119 (346)
++.....||..|+..||.+-. +| |.. ..+|+.|.....=. .++...-++=.+.++..+.+ +
T Consensus 3 p~~~~~~~t~~E~r~fira~~----kf----------G~~--~~r~~~I~~da~L~--~Ks~~~v~~y~~~f~~~c~~~~ 64 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYK----KF----------GGP--LERLDAIARDAELV--DKSETDLRRLGELVHNGCIKAL 64 (211)
T ss_dssp -----CCSCHHHHHHHHHHHT----TC----------SSG--GGCHHHHHHHTTCT--TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHH----HH----------CCc--hhHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 556678999999999999722 32 211 35899998864322 57888888777777777655 5
Q ss_pred Hhhhhc
Q 019057 120 KEWESH 125 (346)
Q Consensus 120 kdwer~ 125 (346)
.++++.
T Consensus 65 ~~~~~~ 70 (211)
T 4b4c_A 65 KDSSSG 70 (211)
T ss_dssp C-----
T ss_pred HHHhhh
Confidence 566553
No 52
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.17 E-value=58 Score=21.99 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhhccCC
Q 019057 108 RWSNLAGDFKKIKEWESHVKD 128 (346)
Q Consensus 108 KWeNLl~dYKkVkdwer~~~~ 128 (346)
-|++....+|.||++.++.++
T Consensus 11 ~f~~FY~rlk~Ike~Hrr~P~ 31 (38)
T 2dt7_A 11 EFAEFYNRLKQIKEFHRKHPN 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 599999999999999998643
No 53
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=22.06 E-value=9.3 Score=27.47 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.7
Q ss_pred cCCCCCchHHHHHHHH
Q 019057 144 RKLPGFFDREVYDILD 159 (346)
Q Consensus 144 ~~LP~~Fd~EVydaLd 159 (346)
..||.+.|.|||..|=
T Consensus 10 ~~lP~~VD~eVF~~LP 25 (48)
T 2kwv_A 10 QALPEGVDQEVFKQLP 25 (48)
T ss_dssp TSSCTTCCGGGTTTSC
T ss_pred ccCCCCCCHHHHHHCc
Confidence 5899999999997663
No 54
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=21.45 E-value=1.9e+02 Score=22.47 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHhh------hHHHHHHHHHhhhhhhhhHHHHhhhhhHHHHHH
Q 019057 285 MSNMQYQLIDVLERN------GKMLTAQLEAQNNSFQLDREQRKDHADSLVAVL 332 (346)
Q Consensus 285 ~~~lq~qlievL~rn------~~ml~aQLeAQn~n~qLdReqrkdq~~sLv~vL 332 (346)
-+.|=..||.|||.+ |=|+--=+-.-.+| +..-.||+.-+++...+|
T Consensus 12 vE~ll~eli~VLEKH~Ap~DLSLMvLGN~vTnlln-~V~~~qR~~iAe~Fa~AL 64 (76)
T 2jr2_A 12 VEKIIQDLLDVLVKEEVTPDLALMCLGNAVTNIIA-QVPESKRVAVVDNFTKAL 64 (76)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 456778999999999 44444444445667 889999997666665555
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=21.09 E-value=2.2e+02 Score=26.56 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=31.4
Q ss_pred chHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHHhhhh
Q 019057 84 PKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWES 124 (346)
Q Consensus 84 ~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVkdwer 124 (346)
..|+.|++++- .|+...-|++|..++..| .|.++..
T Consensus 172 ~~fk~ia~~~P----~HT~~SWRdRyrKfl~~~-gi~~yi~ 207 (246)
T 1ign_A 172 EFFKHFAEEHA----AHTENAWRDRFRKFLLAY-GIDDYIS 207 (246)
T ss_dssp THHHHHHHHTT----TSCHHHHHHHHHHTHHHH-CHHHHHH
T ss_pred HHHHHHHHHCC----CCChhhHHHHHHHHHhhc-ChHHHHH
Confidence 48999999976 689999999999999999 7776654
No 56
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=20.38 E-value=1.8e+02 Score=21.56 Aligned_cols=43 Identities=7% Similarity=0.191 Sum_probs=31.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHH-HHhcCCCCChHHhhH
Q 019057 42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSY-CKRHGVNRGPVQCRK 107 (346)
Q Consensus 42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~-c~~~Gv~Rs~~QCr~ 107 (346)
+.....||.+|...+.++-... |+ .|..|+.. +. .|+..||-.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~y------GK-------------df~~I~~~~v~----~Kt~~~~v~ 48 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKY------GK-------------DFNDIRQDFLP----WKSLTSIIE 48 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHT------CS-------------CHHHHHHTTCS----SSCHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHh------Cc-------------cHHHHHHHHcC----CCCHHHHHH
Confidence 3677899999998888763221 22 58899863 33 699999975
Done!