BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019058
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
Length = 306
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 112 SYLKELLAKEGFLVISVPYNVTFDHANAANQVYERFNSCLDYVLS 156
++L E +A GF+VI++ N T D ++ + + N+ LDY+L+
Sbjct: 113 AWLGERIASHGFVVIAIDTNTTLDQPDSRAR---QLNAALDYMLT 154
>pdb|3SWG|A Chain A, Aquifex Aeolicus Mura In Complex With Udp-N-Acetylmuramic
Acid And Covalent Adduct Of Pep With Cys124
Length = 425
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 70 NNKIYQRL-GSCLIIPPLNGKKPRAIIKFLGGAFIGAVP-EVTYSYLKELLA----KEGF 123
N +I +R+ S L + PL G+ RA++ GG IGA P + + KE A +EG+
Sbjct: 92 NQEIIRRMRASVLSLGPLLGRFGRAVVGLPGGXSIGARPIDQHLKFFKEAGADVEVREGY 151
Query: 124 LVISV 128
+ +++
Sbjct: 152 VYVNL 156
>pdb|2YVW|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
1-Carboxyvinyltransferase From Aquifex Aeolicus Vf5
Length = 425
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 70 NNKIYQRL-GSCLIIPPLNGKKPRAIIKFLGGAFIGAVP-EVTYSYLKELLA----KEGF 123
N +I +R+ S L + PL G+ RA++ GG IGA P + + KE A +EG+
Sbjct: 92 NQEIIRRMRASVLSLGPLLGRFGRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREGY 151
Query: 124 LVISV 128
+ +++
Sbjct: 152 VYVNL 156
>pdb|3EOO|A Chain A, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|B Chain B, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|C Chain C, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|D Chain D, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|E Chain E, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|F Chain F, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|G Chain G, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|H Chain H, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|I Chain I, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|J Chain J, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|K Chain K, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|L Chain L, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|M Chain M, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|N Chain N, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|O Chain O, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|P Chain P, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
Length = 298
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 178 GHRPATEAVPYFEQLGPLVNQMMPIVEASPVYS---MARNASGDAWKLLLNTAEALI--- 231
GHRP E VP G +V+++ V+A + MAR + A + A+
Sbjct: 127 GHRPGKECVP----AGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVE 182
Query: 232 PGSDM---ESLVSLNNFVDQLPSVFGQVTEGISEFKPTPSENLDCFKKSYNVQHTLLVKF 288
G+DM E++ +L+++ +V + ++EF TP LD K + NV L
Sbjct: 183 AGADMIFPEAMKTLDDYRRFKEAVKVPILANLTEFGSTPLFTLDELKGA-NVDIALYCCG 241
Query: 289 SFDTIDQTDL 298
++ +++ L
Sbjct: 242 AYRAMNKAAL 251
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 252 VFGQVTEGISEFKPTPSENLDCFKKSYN---VQHTLLVK--FSFDTIDQTDLLEET 302
+ G T G+S F P P+E + + Y +++ L+ F FDT D TD L E
Sbjct: 137 LMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEA 192
>pdb|2YH2|A Chain A, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|B Chain B, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|C Chain C, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|D Chain D, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|3ZWQ|A Chain A, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
pdb|3ZWQ|B Chain B, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
Length = 313
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 85 PLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNVTFDH 136
P +G++ A++ + GG F+ E + L G +V+SV Y + +H
Sbjct: 70 PRDGERLPAVVYYHGGGFVLGSVETHDHVCRRLANLSGAVVVSVDYRLAPEH 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,870,757
Number of Sequences: 62578
Number of extensions: 398704
Number of successful extensions: 906
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 7
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)