Query 019058
Match_columns 346
No_of_seqs 105 out of 114
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:20:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07082 DUF1350: Protein of u 100.0 2.4E-74 5.1E-79 541.2 17.1 212 73-335 1-215 (250)
2 KOG1455 Lysophospholipase [Lip 96.8 0.0054 1.2E-07 60.7 8.8 96 76-200 39-146 (313)
3 PLN02385 hydrolase; alpha/beta 96.2 0.035 7.7E-07 53.3 9.8 44 86-131 81-124 (349)
4 PRK10566 esterase; Provisional 95.9 0.086 1.9E-06 47.3 10.2 87 90-199 25-123 (249)
5 PLN02298 hydrolase, alpha/beta 95.9 0.057 1.2E-06 51.1 9.5 81 89-180 56-142 (330)
6 TIGR03101 hydr2_PEP hydrolase, 95.3 0.15 3.2E-06 49.0 10.2 89 85-198 18-114 (266)
7 TIGR03100 hydr1_PEP hydrolase, 95.2 0.13 2.9E-06 48.1 9.3 93 76-180 13-108 (274)
8 COG4757 Predicted alpha/beta h 94.9 0.055 1.2E-06 52.6 5.8 75 106-191 41-124 (281)
9 PLN02652 hydrolase; alpha/beta 94.5 0.15 3.2E-06 51.3 8.1 84 83-180 127-216 (395)
10 PHA02857 monoglyceride lipase; 93.9 0.46 1E-05 43.3 9.4 39 90-131 23-61 (276)
11 PRK10162 acetyl esterase; Prov 93.6 0.42 9.1E-06 46.1 9.1 96 80-198 71-169 (318)
12 PLN00021 chlorophyllase 93.6 0.55 1.2E-05 45.9 9.9 33 94-129 54-86 (313)
13 PF12740 Chlorophyllase2: Chlo 93.4 0.36 7.7E-06 46.9 8.2 41 86-129 11-51 (259)
14 PRK05077 frsA fermentation/res 92.3 0.71 1.5E-05 46.6 8.9 92 76-180 180-273 (414)
15 PF12146 Hydrolase_4: Putative 92.2 0.37 8E-06 38.1 5.4 42 83-128 8-49 (79)
16 TIGR01607 PST-A Plasmodium sub 91.7 1.4 3.1E-05 42.7 10.0 45 282-329 272-317 (332)
17 PF07859 Abhydrolase_3: alpha/ 91.6 0.39 8.5E-06 42.0 5.5 76 94-180 1-79 (211)
18 PRK10749 lysophospholipase L2; 91.2 1.8 3.9E-05 41.5 10.0 39 90-131 52-90 (330)
19 PF02450 LCAT: Lecithin:choles 90.4 2.1 4.6E-05 43.0 10.0 96 74-198 34-134 (389)
20 COG1506 DAP2 Dipeptidyl aminop 90.0 2.2 4.8E-05 45.4 10.3 97 73-180 374-481 (620)
21 PRK13604 luxD acyl transferase 88.7 3.4 7.4E-05 41.1 9.9 98 74-198 19-123 (307)
22 PF00975 Thioesterase: Thioest 88.0 0.76 1.6E-05 40.6 4.4 36 91-132 2-37 (229)
23 COG2267 PldB Lysophospholipase 87.8 0.46 1E-05 46.0 3.2 74 91-180 33-115 (298)
24 PLN02733 phosphatidylcholine-s 86.3 1.4 3E-05 45.6 5.8 101 72-198 70-177 (440)
25 PLN02965 Probable pheophorbida 85.7 5.3 0.00012 36.2 8.7 37 91-130 2-38 (255)
26 PLN02211 methyl indole-3-aceta 85.3 6.1 0.00013 37.1 9.1 42 86-132 14-55 (273)
27 TIGR03502 lipase_Pla1_cef extr 85.1 4.6 9.9E-05 45.0 9.3 34 94-130 451-484 (792)
28 COG0657 Aes Esterase/lipase [L 85.0 4.9 0.00011 38.0 8.4 83 89-180 77-160 (312)
29 PF12695 Abhydrolase_5: Alpha/ 83.5 3.4 7.3E-05 33.3 5.8 62 109-198 13-76 (145)
30 PRK10985 putative hydrolase; P 82.9 5 0.00011 38.4 7.6 56 110-180 75-139 (324)
31 TIGR01836 PHA_synth_III_C poly 82.8 4 8.7E-05 39.5 7.0 59 111-180 83-144 (350)
32 TIGR03695 menH_SHCHC 2-succiny 82.3 5.5 0.00012 33.6 6.9 33 95-131 4-36 (251)
33 PF12697 Abhydrolase_6: Alpha/ 82.3 5.1 0.00011 33.2 6.6 22 109-131 12-33 (228)
34 PRK10673 acyl-CoA esterase; Pr 81.1 11 0.00023 33.4 8.6 46 82-131 6-51 (255)
35 TIGR02427 protocat_pcaD 3-oxoa 80.0 19 0.00041 30.5 9.3 32 94-129 15-46 (251)
36 PLN02517 phosphatidylcholine-s 75.5 7.8 0.00017 42.3 6.9 78 92-198 146-228 (642)
37 TIGR03056 bchO_mg_che_rel puta 72.8 32 0.00069 30.5 9.2 34 94-131 30-63 (278)
38 PF10230 DUF2305: Uncharacteri 72.5 15 0.00033 35.0 7.5 61 110-180 17-92 (266)
39 TIGR01840 esterase_phb esteras 71.1 12 0.00025 33.5 6.1 41 266-306 149-197 (212)
40 PRK10115 protease 2; Provision 70.7 89 0.0019 34.1 13.6 207 75-329 427-658 (686)
41 PF00326 Peptidase_S9: Prolyl 70.0 11 0.00024 33.3 5.7 70 111-200 3-81 (213)
42 KOG1515 Arylacetamide deacetyl 68.8 32 0.00069 34.6 9.1 81 92-182 91-176 (336)
43 TIGR01250 pro_imino_pep_2 prol 68.3 21 0.00046 31.1 7.0 42 282-329 233-275 (288)
44 PRK00870 haloalkane dehalogena 67.3 22 0.00047 33.2 7.2 24 108-131 59-82 (302)
45 PLN02511 hydrolase 66.9 23 0.00051 35.3 7.8 56 111-181 118-182 (388)
46 PF01738 DLH: Dienelactone hyd 66.5 55 0.0012 29.2 9.4 96 80-199 3-114 (218)
47 PLN02442 S-formylglutathione h 66.5 1.2E+02 0.0026 28.8 13.1 40 281-324 217-262 (283)
48 PF06821 Ser_hydrolase: Serine 64.2 5.9 0.00013 35.5 2.7 154 103-337 8-166 (171)
49 PF03583 LIP: Secretory lipase 63.5 17 0.00037 35.2 5.9 65 113-186 17-85 (290)
50 TIGR02240 PHA_depoly_arom poly 61.7 35 0.00075 31.3 7.4 37 88-131 24-60 (276)
51 TIGR01838 PHA_synth_I poly(R)- 61.0 19 0.00041 38.4 6.1 78 89-180 188-270 (532)
52 COG5423 Predicted metal-bindin 60.4 15 0.00033 33.7 4.6 32 263-297 54-85 (167)
53 PF07515 DUF1528: Protein of u 58.9 6.2 0.00013 33.4 1.8 28 90-117 5-32 (106)
54 TIGR02821 fghA_ester_D S-formy 55.1 91 0.002 29.2 9.1 42 281-326 211-258 (275)
55 KOG2369 Lecithin:cholesterol a 53.8 32 0.0007 36.5 6.3 67 110-198 125-197 (473)
56 TIGR03611 RutD pyrimidine util 53.0 1.3E+02 0.0029 25.8 9.1 22 109-131 27-48 (257)
57 PLN03087 BODYGUARD 1 domain co 52.8 1.8E+02 0.0038 30.8 11.5 41 282-327 420-461 (481)
58 PRK11126 2-succinyl-6-hydroxy- 48.9 61 0.0013 28.5 6.5 32 95-131 5-36 (242)
59 PF07224 Chlorophyllase: Chlor 47.8 1.1E+02 0.0024 30.8 8.6 91 83-184 37-132 (307)
60 KOG2029 Uncharacterized conser 46.7 37 0.00079 37.4 5.5 56 122-197 478-540 (697)
61 PLN02679 hydrolase, alpha/beta 46.0 69 0.0015 31.3 7.0 22 109-131 102-123 (360)
62 COG4822 CbiK Cobalamin biosynt 45.0 68 0.0015 31.4 6.5 108 113-228 64-229 (265)
63 PF10561 UPF0565: Uncharacteri 43.3 43 0.00094 33.5 5.1 65 91-158 233-300 (303)
64 PLN02578 hydrolase 43.2 97 0.0021 30.1 7.5 36 89-131 86-121 (354)
65 COG4138 BtuD ABC-type cobalami 42.9 70 0.0015 30.8 6.1 71 70-144 127-203 (248)
66 TIGR01738 bioH putative pimelo 38.3 99 0.0022 26.1 6.0 25 104-130 14-38 (245)
67 PRK14875 acetoin dehydrogenase 37.2 84 0.0018 29.7 5.9 39 282-328 316-355 (371)
68 KOG2800 Conserved developmenta 36.7 64 0.0014 33.1 5.1 63 92-154 294-359 (389)
69 PLN02872 triacylglycerol lipas 36.3 78 0.0017 32.2 5.8 19 112-130 97-115 (395)
70 COG0412 Dienelactone hydrolase 35.9 3.7E+02 0.0079 25.2 9.9 100 75-200 12-129 (236)
71 PRK09856 fructoselysine 3-epim 35.8 3.6E+02 0.0078 24.9 14.8 75 262-340 156-235 (275)
72 PLN02894 hydrolase, alpha/beta 35.3 3.8E+02 0.0083 26.9 10.5 35 93-131 106-140 (402)
73 COG1647 Esterase/lipase [Gener 35.2 3.8E+02 0.0083 26.3 9.9 73 102-200 24-102 (243)
74 cd03409 Chelatase_Class_II Cla 33.7 1.3E+02 0.0029 23.4 5.7 45 106-153 44-89 (101)
75 cd00419 Ferrochelatase_C Ferro 32.9 1E+02 0.0022 26.8 5.2 38 112-149 80-118 (135)
76 PF13377 Peripla_BP_3: Peripla 32.5 2.8E+02 0.0061 22.7 8.6 78 96-180 13-106 (160)
77 PF12048 DUF3530: Protein of u 32.3 4.2E+02 0.0091 26.1 10.0 55 73-128 65-123 (310)
78 COG0525 ValS Valyl-tRNA synthe 31.9 44 0.00096 38.0 3.5 53 79-143 35-88 (877)
79 PF08538 DUF1749: Protein of u 31.9 1.4E+02 0.003 30.1 6.6 84 91-182 32-118 (303)
80 cd02901 Macro_Poa1p_like Macro 31.6 2.6E+02 0.0057 23.5 7.5 70 76-147 57-137 (140)
81 PF04110 APG12: Ubiquitin-like 31.5 21 0.00045 29.6 0.7 30 261-290 53-82 (87)
82 PF03403 PAF-AH_p_II: Platelet 30.7 37 0.00081 34.3 2.5 21 108-128 113-133 (379)
83 PRK05855 short chain dehydroge 30.5 2.3E+02 0.005 28.5 8.1 33 94-130 27-59 (582)
84 cd00707 Pancreat_lipase_like P 29.8 2.7E+02 0.0058 26.6 8.0 85 91-199 38-128 (275)
85 PF05014 Nuc_deoxyrib_tr: Nucl 28.9 1E+02 0.0022 25.2 4.4 57 97-157 2-62 (113)
86 PF10881 DUF2726: Protein of u 28.5 2.6E+02 0.0056 23.3 6.9 63 82-145 61-124 (126)
87 TIGR03343 biphenyl_bphD 2-hydr 28.5 1.1E+02 0.0025 27.4 5.0 42 283-329 226-268 (282)
88 COG0549 ArcC Carbamate kinase 28.1 69 0.0015 32.3 3.8 44 70-136 155-203 (312)
89 TIGR00976 /NonD putative hydro 28.0 1.1E+02 0.0024 32.0 5.5 91 76-180 8-105 (550)
90 PRK03592 haloalkane dehalogena 26.2 1.8E+02 0.004 26.7 6.1 22 109-131 41-62 (295)
91 PRK00035 hemH ferrochelatase; 26.2 96 0.0021 30.3 4.4 37 110-146 249-286 (333)
92 PRK11071 esterase YqiA; Provis 26.1 1.8E+02 0.0039 26.0 5.8 66 103-200 10-78 (190)
93 PRK09411 carbamate kinase; Rev 25.1 99 0.0022 30.9 4.3 42 71-135 148-194 (297)
94 PF03969 AFG1_ATPase: AFG1-lik 24.9 1.2E+02 0.0027 30.6 5.0 39 111-157 147-192 (362)
95 PLN02824 hydrolase, alpha/beta 22.7 2.6E+02 0.0055 25.8 6.3 44 281-329 235-279 (294)
96 cd03109 DTBS Dethiobiotin synt 22.4 2E+02 0.0043 24.4 5.1 50 91-141 40-89 (134)
97 smart00506 A1pp Appr-1"-p proc 22.3 2.2E+02 0.0048 23.2 5.3 65 76-141 57-131 (133)
98 COG0429 Predicted hydrolase of 22.1 4.7E+02 0.01 26.9 8.4 93 71-182 48-158 (345)
99 KOG1502 Flavonol reductase/cin 22.0 75 0.0016 32.2 2.8 22 112-133 20-41 (327)
100 PRK10439 enterobactin/ferric e 21.9 5.3E+02 0.012 26.4 8.9 28 293-324 364-391 (411)
101 COG3458 Acetyl esterase (deace 20.9 87 0.0019 31.7 2.9 47 75-128 67-115 (321)
No 1
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=100.00 E-value=2.4e-74 Score=541.17 Aligned_cols=212 Identities=41% Similarity=0.716 Sum_probs=189.2
Q ss_pred cceEeccEEEeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCCCCChHHHHHHHHHHHHHHHH
Q 019058 73 IYQRLGSCLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNVTFDHANAANQVYERFNSCLD 152 (346)
Q Consensus 73 ~w~r~~~~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~tFDH~~iA~ev~~~F~~~~~ 152 (346)
+|++++++||+.|| +|+|||||||||||||+||||||+|||+|+++||+||||||++||||+++|++++++|++|++
T Consensus 1 ~w~~i~~~wvl~P~---~P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~A~~~~~~f~~~~~ 77 (250)
T PF07082_consen 1 DWQEISGSWVLIPP---RPKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAIAREVWERFERCLR 77 (250)
T ss_pred CcccccCcEEEeCC---CCCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence 69999999999996 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhhcccccccchhHHhhhcccchhHHHHhhhhhccCC
Q 019058 153 YVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQMMPIVEASPVYSMARNASGDAWKLLLNTAEALIP 232 (346)
Q Consensus 153 ~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~L~p~~~asp~~~~~R~~~~~~~k~l~n~ag~l~~ 232 (346)
.|.+++. + +.+++|+|||||| ||||||+|++ ..++..| +||
T Consensus 78 ~L~~~~~----~---~~~~lP~~~vGHS-----------lGcklhlLi~-----s~~~~~r-------------~gn--- 118 (250)
T PF07082_consen 78 ALQKRGG----L---DPAYLPVYGVGHS-----------LGCKLHLLIG-----SLFDVER-------------AGN--- 118 (250)
T ss_pred HHHHhcC----C---CcccCCeeeeecc-----------cchHHHHHHh-----hhccCcc-------------cce---
Confidence 9998742 2 3567999999999 9999999984 2333334 233
Q ss_pred CCchHHHHHhHHHH--hhhhhhhhhccCC-cccccCChHHHHHHHHhccCccceeeEEecCCCCCCcHHHHHHhchhccc
Q 019058 233 GSDMESLVSLNNFV--DQLPSVFGQVTEG-ISEFKPTPSENLDCFKKSYNVQHTLLVKFSFDTIDQTDLLEETLKPRMES 309 (346)
Q Consensus 233 ~~~~~i~~sf~nfv--dqLp~~~~~va~G-~~EF~PsPeET~~LI~~sY~v~rnLLIkF~dD~IDqT~~L~~~L~~r~~s 309 (346)
+++||||+- +.||. +.+++.. ++||+|||+||+++|+++|.++|||||||+||+||||+.|+++|++|.
T Consensus 119 -----iliSFNN~~a~~aIP~-~~~l~~~l~~EF~PsP~ET~~li~~~Y~~~rnLLIkF~~D~iDqt~~L~~~L~~r~-- 190 (250)
T PF07082_consen 119 -----ILISFNNFPADEAIPL-LEQLAPALRLEFTPSPEETRRLIRESYQVRRNLLIKFNDDDIDQTDELEQILQQRF-- 190 (250)
T ss_pred -----EEEecCChHHHhhCch-HhhhccccccCccCCHHHHHHHHHHhcCCccceEEEecCCCccchHHHHHHHhhhc--
Confidence 789999954 37775 5555543 789999999999999999999999999999999999999999999994
Q ss_pred cCCceeEEeecCCCcccCcccccchh
Q 019058 310 IGGTVEKVQLNGNHITPCIQVIHANS 335 (346)
Q Consensus 310 ~~~~v~~~~LpGnHLTPl~qd~~~~~ 335 (346)
++++++++|||||||||+||++|+.
T Consensus 191 -~~~~~~~~L~G~HLTPl~q~~~~~~ 215 (250)
T PF07082_consen 191 -PDMVSIQTLPGNHLTPLGQDLKWQV 215 (250)
T ss_pred -cccceEEeCCCCCCCcCcCCcCCcc
Confidence 4679999999999999999999997
No 2
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=96.82 E-value=0.0054 Score=60.73 Aligned_cols=96 Identities=26% Similarity=0.431 Sum_probs=71.0
Q ss_pred EeccEEEeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEe------------cCCCCCChHHHHHHH
Q 019058 76 RLGSCLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISV------------PYNVTFDHANAANQV 143 (346)
Q Consensus 76 r~~~~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAt------------Py~~tFDH~~iA~ev 143 (346)
++..++-+|- ++.+|+|+|-|+-|. |.-=..+|+.+-.+|++.||.|.|. .|+.+|||. .+.|
T Consensus 39 ~lft~~W~p~-~~~~pr~lv~~~HG~--g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl~~yi~~~d~~--v~D~ 113 (313)
T KOG1455|consen 39 KLFTQSWLPL-SGTEPRGLVFLCHGY--GEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHAYVPSFDLV--VDDV 113 (313)
T ss_pred EeEEEecccC-CCCCCceEEEEEcCC--cccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCCcccCCcHHHH--HHHH
Confidence 4444443321 335899999999995 4445579999999999999999997 678889874 6777
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhhcc
Q 019058 144 YERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQMM 200 (346)
Q Consensus 144 ~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~L~ 200 (346)
..-|+....+- +...+|.|-+||| ||..+.+++
T Consensus 114 ~~~~~~i~~~~-------------e~~~lp~FL~GeS-----------MGGAV~Ll~ 146 (313)
T KOG1455|consen 114 ISFFDSIKERE-------------ENKGLPRFLFGES-----------MGGAVALLI 146 (313)
T ss_pred HHHHHHHhhcc-------------ccCCCCeeeeecC-----------cchHHHHHH
Confidence 77777543221 2456899999999 888777765
No 3
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=96.18 E-value=0.035 Score=53.32 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=34.5
Q ss_pred CCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC
Q 019058 86 LNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 86 P~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
|...+|+++|-|+-|. |......|+.+.+.|+++||.|++.=|.
T Consensus 81 p~~~~~~~~iv~lHG~--~~~~~~~~~~~~~~l~~~g~~v~~~D~~ 124 (349)
T PLN02385 81 PENSRPKAAVCFCHGY--GDTCTFFFEGIARKIASSGYGVFAMDYP 124 (349)
T ss_pred cCCCCCCeEEEEECCC--CCccchHHHHHHHHHHhCCCEEEEecCC
Confidence 3344789999999993 4444566789999999999999998554
No 4
>PRK10566 esterase; Provisional
Probab=95.86 E-value=0.086 Score=47.26 Aligned_cols=87 Identities=23% Similarity=0.330 Sum_probs=55.3
Q ss_pred CCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCC-C----------CCh-HHHHHHHHHHHHHHHHHHHhc
Q 019058 90 KPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNV-T----------FDH-ANAANQVYERFNSCLDYVLST 157 (346)
Q Consensus 90 ~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~-t----------FDH-~~iA~ev~~~F~~~~~~L~~~ 157 (346)
++..+|-|+-| + +.. ...|+.+...|+++||.|++.-|.- + ++. +.......+.+...++.+.+.
T Consensus 25 ~~~p~vv~~HG-~-~~~-~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (249)
T PRK10566 25 TPLPTVFFYHG-F-TSS-KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREE 101 (249)
T ss_pred CCCCEEEEeCC-C-Ccc-cchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777777 3 332 2468999999999999999997752 1 111 122223345555566666654
Q ss_pred CCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhhc
Q 019058 158 GLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQM 199 (346)
Q Consensus 158 g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~L 199 (346)
+. ...-.++.+||| +|+-+.+.
T Consensus 102 ~~---------~~~~~i~v~G~S-----------~Gg~~al~ 123 (249)
T PRK10566 102 GW---------LLDDRLAVGGAS-----------MGGMTALG 123 (249)
T ss_pred CC---------cCccceeEEeec-----------ccHHHHHH
Confidence 21 233478999999 88877753
No 5
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=95.86 E-value=0.057 Score=51.07 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=50.5
Q ss_pred CCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCC-C-----CChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 019058 89 KKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNV-T-----FDHANAANQVYERFNSCLDYVLSTGLPDA 162 (346)
Q Consensus 89 ~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~-t-----FDH~~iA~ev~~~F~~~~~~L~~~g~~~~ 162 (346)
..|+++|-||=|.- ..-...|..+.+.|+++||.|++.=+.- | ..|..--+...+.....++.|..+.
T Consensus 56 ~~~~~~VvllHG~~--~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~---- 129 (330)
T PLN02298 56 SPPRALIFMVHGYG--NDISWTFQSTAIFLAQMGFACFALDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQRE---- 129 (330)
T ss_pred CCCceEEEEEcCCC--CCcceehhHHHHHHHhCCCEEEEecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcc----
Confidence 36899999999973 2224567888899999999999985541 1 1111111223344455555665431
Q ss_pred CCCCCCCCCCCeeEecCC
Q 019058 163 NLTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 163 gl~~~~~~~lPv~gVGHS 180 (346)
....+|++.+|||
T Consensus 130 -----~~~~~~i~l~GhS 142 (330)
T PLN02298 130 -----EFQGLPRFLYGES 142 (330)
T ss_pred -----cCCCCCEEEEEec
Confidence 1234689999999
No 6
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=95.30 E-value=0.15 Score=49.01 Aligned_cols=89 Identities=20% Similarity=0.248 Sum_probs=53.9
Q ss_pred CCCCCCCcEEEEeeccccccccc---hhhHHHHHHHHHhCCcEEEEecCCC-CC---ChHH-HHHHHHHHHHHHHHHHHh
Q 019058 85 PLNGKKPRAIIKFLGGAFIGAVP---EVTYSYLKELLAKEGFLVISVPYNV-TF---DHAN-AANQVYERFNSCLDYVLS 156 (346)
Q Consensus 85 PP~~~~P~gVIhFiGGAfvGa~P---qitYr~LLE~La~~Gy~ViAtPy~~-tF---DH~~-iA~ev~~~F~~~~~~L~~ 156 (346)
+|.+.+|+++|-|+-|. |.-- .-.++.+-+.|+++||.|++.=|.- +. ++.. --....+....+++.|.+
T Consensus 18 ~p~~~~~~~~VlllHG~--g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~ 95 (266)
T TIGR03101 18 PPVAVGPRGVVIYLPPF--AEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIE 95 (266)
T ss_pred cCCCCCCceEEEEECCC--cccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 34455678999999983 3211 2345667899999999999997753 11 1110 001122233344555554
Q ss_pred cCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhh
Q 019058 157 TGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQ 198 (346)
Q Consensus 157 ~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~ 198 (346)
.+. -|++.+||| ||+.+.+
T Consensus 96 ~~~------------~~v~LvG~S-----------mGG~vAl 114 (266)
T TIGR03101 96 QGH------------PPVTLWGLR-----------LGALLAL 114 (266)
T ss_pred cCC------------CCEEEEEEC-----------HHHHHHH
Confidence 321 489999999 8887765
No 7
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=95.19 E-value=0.13 Score=48.12 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=55.1
Q ss_pred EeccEEEeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCC-CCC-hH-HHHHHHHHHHHHHHH
Q 019058 76 RLGSCLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNV-TFD-HA-NAANQVYERFNSCLD 152 (346)
Q Consensus 76 r~~~~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~-tFD-H~-~iA~ev~~~F~~~~~ 152 (346)
++.+++..| ...++.+||.|.||.-.-....-.|..+.+.|+++||.|++.-+.- +.. .. .--....+....+++
T Consensus 13 ~l~g~~~~p--~~~~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~~~~~~~~~d~~~~~~ 90 (274)
T TIGR03100 13 TLVGVLHIP--GASHTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGENLGFEGIDADIAAAID 90 (274)
T ss_pred EEEEEEEcC--CCCCCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 355556553 3334678999999864322223346789999999999999986652 100 00 011233455566777
Q ss_pred HHHhcCCCCCCCCCCCCCCCCeeEecCC
Q 019058 153 YVLSTGLPDANLTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 153 ~L~~~g~~~~gl~~~~~~~lPv~gVGHS 180 (346)
.|.+. .+ |+ -+++.+|||
T Consensus 91 ~l~~~-~~--g~-------~~i~l~G~S 108 (274)
T TIGR03100 91 AFREA-AP--HL-------RRIVAWGLC 108 (274)
T ss_pred HHHhh-CC--CC-------CcEEEEEEC
Confidence 76543 10 11 247899999
No 8
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=94.86 E-value=0.055 Score=52.60 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=57.2
Q ss_pred cchhhHHHHHHHHHhCCcEEEEecCCC------CCCh---HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeE
Q 019058 106 VPEVTYSYLKELLAKEGFLVISVPYNV------TFDH---ANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYS 176 (346)
Q Consensus 106 ~PqitYr~LLE~La~~Gy~ViAtPy~~------tFDH---~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~g 176 (346)
.+|.+||+|-+.++++||.|...-|.- .--| +..++=....|..+++.+.+. ....|.|.
T Consensus 41 v~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~-----------~~~~P~y~ 109 (281)
T COG4757 41 VGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKA-----------LPGHPLYF 109 (281)
T ss_pred cchhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhhhhcchHHHHHHHHhh-----------CCCCceEE
Confidence 578999999999999999999888862 1222 444555677888888888763 23479999
Q ss_pred ecCCCCcCccchhhh
Q 019058 177 VGHRPATEAVPYFEQ 191 (346)
Q Consensus 177 VGHS~a~~AvP~f~~ 191 (346)
||||-+..++-++.+
T Consensus 110 vgHS~GGqa~gL~~~ 124 (281)
T COG4757 110 VGHSFGGQALGLLGQ 124 (281)
T ss_pred eeccccceeeccccc
Confidence 999977777766665
No 9
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=94.45 E-value=0.15 Score=51.35 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=51.9
Q ss_pred eCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCC-CC-C---h-HHHHHHHHHHHHHHHHHHHh
Q 019058 83 IPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNV-TF-D---H-ANAANQVYERFNSCLDYVLS 156 (346)
Q Consensus 83 l~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~-tF-D---H-~~iA~ev~~~F~~~~~~L~~ 156 (346)
.+.|....|+++|-|+=|..- . .-.|+.+.+.|+++||.|++.=+.- |. + + ..-.+...+..+..++.+..
T Consensus 127 ~~~p~~~~~~~~Vl~lHG~~~--~-~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~ 203 (395)
T PLN02652 127 SWAPAAGEMRGILIIIHGLNE--H-SGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRS 203 (395)
T ss_pred EecCCCCCCceEEEEECCchH--H-HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 334544568899999988532 2 2348999999999999999985541 11 1 1 11112233344555555543
Q ss_pred cCCCCCCCCCCCCCCCCeeEecCC
Q 019058 157 TGLPDANLTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 157 ~g~~~~gl~~~~~~~lPv~gVGHS 180 (346)
. ....|++.+|||
T Consensus 204 ~-----------~~~~~i~lvGhS 216 (395)
T PLN02652 204 E-----------NPGVPCFLFGHS 216 (395)
T ss_pred h-----------CCCCCEEEEEEC
Confidence 2 123589999999
No 10
>PHA02857 monoglyceride lipase; Provisional
Probab=93.87 E-value=0.46 Score=43.26 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=31.5
Q ss_pred CCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC
Q 019058 90 KPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 90 ~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
.|+++|-|+=|. |. ..-.|+.+.+.|+++||.|+|.=+.
T Consensus 23 ~~~~~v~llHG~--~~-~~~~~~~~~~~l~~~g~~via~D~~ 61 (276)
T PHA02857 23 YPKALVFISHGA--GE-HSGRYEELAENISSLGILVFSHDHI 61 (276)
T ss_pred CCCEEEEEeCCC--cc-ccchHHHHHHHHHhCCCEEEEccCC
Confidence 678999887774 33 3668999999999999999998444
No 11
>PRK10162 acetyl esterase; Provisional
Probab=93.63 E-value=0.42 Score=46.09 Aligned_cols=96 Identities=20% Similarity=0.263 Sum_probs=59.9
Q ss_pred EEEeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhC-CcEEEEecCCCCCChH--HHHHHHHHHHHHHHHHHHh
Q 019058 80 CLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKE-GFLVISVPYNVTFDHA--NAANQVYERFNSCLDYVLS 156 (346)
Q Consensus 80 ~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~-Gy~ViAtPy~~tFDH~--~iA~ev~~~F~~~~~~L~~ 156 (346)
..+..|..... ..||.|=||.|+.-.+. +++.+.+.|+++ |+.||+.=|...-+|- ..-+++.. +++.+.+
T Consensus 71 ~~~y~P~~~~~-p~vv~~HGGg~~~g~~~-~~~~~~~~la~~~g~~Vv~vdYrlape~~~p~~~~D~~~----a~~~l~~ 144 (318)
T PRK10162 71 TRLYYPQPDSQ-ATLFYLHGGGFILGNLD-THDRIMRLLASYSGCTVIGIDYTLSPEARFPQAIEEIVA----VCCYFHQ 144 (318)
T ss_pred EEEECCCCCCC-CEEEEEeCCcccCCCch-hhhHHHHHHHHHcCCEEEEecCCCCCCCCCCCcHHHHHH----HHHHHHH
Confidence 34444433333 47999999999866665 477899999974 9999999999877763 12233333 3333332
Q ss_pred cCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhh
Q 019058 157 TGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQ 198 (346)
Q Consensus 157 ~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~ 198 (346)
.. ..+| ...-.++.+||| +|.-+.+
T Consensus 145 ~~-~~~~-----~d~~~i~l~G~S-----------aGG~la~ 169 (318)
T PRK10162 145 HA-EDYG-----INMSRIGFAGDS-----------AGAMLAL 169 (318)
T ss_pred hH-HHhC-----CChhHEEEEEEC-----------HHHHHHH
Confidence 10 0111 122468999999 7766654
No 12
>PLN00021 chlorophyllase
Probab=93.55 E-value=0.55 Score=45.95 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=24.4
Q ss_pred EEEeeccccccccchhhHHHHHHHHHhCCcEEEEec
Q 019058 94 IIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVP 129 (346)
Q Consensus 94 VIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtP 129 (346)
+|-|+=|... ..-.|+++++.|+++||.|+|.=
T Consensus 54 vVv~lHG~~~---~~~~y~~l~~~Las~G~~VvapD 86 (313)
T PLN00021 54 VLLFLHGYLL---YNSFYSQLLQHIASHGFIVVAPQ 86 (313)
T ss_pred EEEEECCCCC---CcccHHHHHHHHHhCCCEEEEec
Confidence 4555545432 24579999999999999999963
No 13
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=93.40 E-value=0.36 Score=46.89 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=33.6
Q ss_pred CCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEec
Q 019058 86 LNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVP 129 (346)
Q Consensus 86 P~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtP 129 (346)
|+..-.--||-|++|.. ...-.|+.+|+++|..||+||+.=
T Consensus 11 P~~~g~yPVv~f~~G~~---~~~s~Ys~ll~hvAShGyIVV~~d 51 (259)
T PF12740_consen 11 PSSAGTYPVVLFLHGFL---LINSWYSQLLEHVASHGYIVVAPD 51 (259)
T ss_pred cCCCCCcCEEEEeCCcC---CCHHHHHHHHHHHHhCceEEEEec
Confidence 55555567899999988 344459999999999999999985
No 14
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=92.29 E-value=0.71 Score=46.64 Aligned_cols=92 Identities=15% Similarity=0.281 Sum_probs=51.6
Q ss_pred EeccEEEeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCC-CC-ChHHHHHHHHHHHHHHHHH
Q 019058 76 RLGSCLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNV-TF-DHANAANQVYERFNSCLDY 153 (346)
Q Consensus 76 r~~~~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~-tF-DH~~iA~ev~~~F~~~~~~ 153 (346)
++.+.+.+|. +..|..+|=+.|| +++.-.-.|+.+.+.|+++||+|++.=|.- |. ++.............+++.
T Consensus 180 ~l~g~l~~P~--~~~~~P~Vli~gG--~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~~~d~~~~~~avld~ 255 (414)
T PRK05077 180 PITGFLHLPK--GDGPFPTVLVCGG--LDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQAVLNA 255 (414)
T ss_pred EEEEEEEECC--CCCCccEEEEeCC--cccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCccccHHHHHHHHHHH
Confidence 5666666654 2344555556677 233223357888999999999999985542 11 1111111111122345666
Q ss_pred HHhcCCCCCCCCCCCCCCCCeeEecCC
Q 019058 154 VLSTGLPDANLTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 154 L~~~g~~~~gl~~~~~~~lPv~gVGHS 180 (346)
|.... .++.-++..+|||
T Consensus 256 l~~~~---------~vd~~ri~l~G~S 273 (414)
T PRK05077 256 LPNVP---------WVDHTRVAAFGFR 273 (414)
T ss_pred HHhCc---------ccCcccEEEEEEC
Confidence 65431 1334588999999
No 15
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=92.19 E-value=0.37 Score=38.15 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=34.4
Q ss_pred eCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEe
Q 019058 83 IPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISV 128 (346)
Q Consensus 83 l~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAt 128 (346)
.|+|... |||+|.++=|. .--.-.|..|.+.|+++||+|++.
T Consensus 8 ~w~p~~~-~k~~v~i~HG~---~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 8 RWKPENP-PKAVVVIVHGF---GEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EecCCCC-CCEEEEEeCCc---HHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3445544 89999999998 345558999999999999999975
No 16
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=91.70 E-value=1.4 Score=42.72 Aligned_cols=45 Identities=11% Similarity=0.001 Sum_probs=28.0
Q ss_pred ceeeEEecCCCCCCcHHHHHHhchhccccCCceeEEeecC-CCcccCcc
Q 019058 282 HTLLVKFSFDTIDQTDLLEETLKPRMESIGGTVEKVQLNG-NHITPCIQ 329 (346)
Q Consensus 282 rnLLIkF~dD~IDqT~~L~~~L~~r~~s~~~~v~~~~LpG-nHLTPl~q 329 (346)
-.|+|.=.+|.+-..+...+..+.. . ....++..++| .|......
T Consensus 272 P~Lii~G~~D~vv~~~~~~~~~~~~-~--~~~~~l~~~~g~~H~i~~E~ 317 (332)
T TIGR01607 272 PILFIHSKGDCVCSYEGTVSFYNKL-S--ISNKELHTLEDMDHVITIEP 317 (332)
T ss_pred CEEEEEeCCCCccCHHHHHHHHHhc-c--CCCcEEEEECCCCCCCccCC
Confidence 4778888999877665555444331 1 12356677886 68776543
No 17
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=91.58 E-value=0.39 Score=42.05 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=47.1
Q ss_pred EEEeeccccccccchhhHHHHHHHHHh-CCcEEEEecCCCC--CChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019058 94 IIKFLGGAFIGAVPEVTYSYLKELLAK-EGFLVISVPYNVT--FDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLV 170 (346)
Q Consensus 94 VIhFiGGAfvGa~PqitYr~LLE~La~-~Gy~ViAtPy~~t--FDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~ 170 (346)
||+|=||+|+.-.+... ..+.+.|++ .|++|+..=|... -.+-.+-+++...++-.++...+-+ ..
T Consensus 1 v~~~HGGg~~~g~~~~~-~~~~~~la~~~g~~v~~~~Yrl~p~~~~p~~~~D~~~a~~~l~~~~~~~~----------~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESH-WPFAARLAAERGFVVVSIDYRLAPEAPFPAALEDVKAAYRWLLKNADKLG----------ID 69 (211)
T ss_dssp EEEE--STTTSCGTTTH-HHHHHHHHHHHTSEEEEEE---TTTSSTTHHHHHHHHHHHHHHHTHHHHT----------EE
T ss_pred CEEECCcccccCChHHH-HHHHHHHHhhccEEEEEeeccccccccccccccccccceeeecccccccc----------cc
Confidence 78999999997777655 777888875 8999999978764 3444555555544444333332212 22
Q ss_pred CCCeeEecCC
Q 019058 171 NLPIYSVGHR 180 (346)
Q Consensus 171 ~lPv~gVGHS 180 (346)
.-.++-+|||
T Consensus 70 ~~~i~l~G~S 79 (211)
T PF07859_consen 70 PERIVLIGDS 79 (211)
T ss_dssp EEEEEEEEET
T ss_pred ccceEEeecc
Confidence 3478999999
No 18
>PRK10749 lysophospholipase L2; Provisional
Probab=91.23 E-value=1.8 Score=41.47 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=30.7
Q ss_pred CCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC
Q 019058 90 KPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 90 ~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
.|+++|-|+.|. +... ..|+.+.+.|+++||.|++.=+.
T Consensus 52 ~~~~~vll~HG~--~~~~-~~y~~~~~~l~~~g~~v~~~D~~ 90 (330)
T PRK10749 52 HHDRVVVICPGR--IESY-VKYAELAYDLFHLGYDVLIIDHR 90 (330)
T ss_pred CCCcEEEEECCc--cchH-HHHHHHHHHHHHCCCeEEEEcCC
Confidence 467789999994 3332 37999999999999999998554
No 19
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=90.36 E-value=2.1 Score=42.97 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=56.3
Q ss_pred ceEeccEEEeCCCCCCCCcEEEEeec-cccccccchhhHHHHHHHHHhCCc----EEEEecCCCCCChHHHHHHHHHHHH
Q 019058 74 YQRLGSCLIIPPLNGKKPRAIIKFLG-GAFIGAVPEVTYSYLKELLAKEGF----LVISVPYNVTFDHANAANQVYERFN 148 (346)
Q Consensus 74 w~r~~~~~vl~PP~~~~P~gVIhFiG-GAfvGa~PqitYr~LLE~La~~Gy----~ViAtPy~~tFDH~~iA~ev~~~F~ 148 (346)
.+...++-+.+ |.-+.-.| |+++- ..+.|.. .|..|+|.|.+.|| .+.|.||..-.... ..++...+..
T Consensus 34 ~~~~~gv~i~~-~~~g~~~~-i~~ld~~~~~~~~---~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~-~~~~~~~~lk 107 (389)
T PF02450_consen 34 YSNDPGVEIRV-PGFGGTSG-IEYLDPSFITGYW---YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA-ERDEYFTKLK 107 (389)
T ss_pred eecCCCceeec-CCCCceee-eeecccccccccc---hHHHHHHHHHhcCcccCCEEEEEeechhhchh-hHHHHHHHHH
Confidence 34455566664 34332233 35554 3333333 89999999999777 57999998766655 2222333333
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhh
Q 019058 149 SCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQ 198 (346)
Q Consensus 149 ~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~ 198 (346)
..++...+ ...-|+..|||| ||+.+.+
T Consensus 108 ~~ie~~~~------------~~~~kv~li~HS-----------mGgl~~~ 134 (389)
T PF02450_consen 108 QLIEEAYK------------KNGKKVVLIAHS-----------MGGLVAR 134 (389)
T ss_pred HHHHHHHH------------hcCCcEEEEEeC-----------CCchHHH
Confidence 33333322 124699999999 7776553
No 20
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=90.03 E-value=2.2 Score=45.36 Aligned_cols=97 Identities=20% Similarity=0.143 Sum_probs=57.5
Q ss_pred cceEeccEEEeCCCCCC--CCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCC-CCChHHHHH--------
Q 019058 73 IYQRLGSCLIIPPLNGK--KPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNV-TFDHANAAN-------- 141 (346)
Q Consensus 73 ~w~r~~~~~vl~PP~~~--~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~-tFDH~~iA~-------- 141 (346)
+=+++.+++++|+.... ++=.||..-||---.-. -+|..+.+.|+.+||+|++.=|.- +.-=+.-++
T Consensus 374 dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~--~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~ 451 (620)
T COG1506 374 DGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVG--YSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGG 451 (620)
T ss_pred CCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccc--cccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCC
Confidence 33467777776552211 12378999999522212 389999999999999999996663 221122222
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCC
Q 019058 142 QVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 142 ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS 180 (346)
.-++....+++.|.+.+. ...--+...|||
T Consensus 452 ~~~~D~~~~~~~l~~~~~---------~d~~ri~i~G~S 481 (620)
T COG1506 452 VDLEDLIAAVDALVKLPL---------VDPERIGITGGS 481 (620)
T ss_pred ccHHHHHHHHHHHHhCCC---------cChHHeEEeccC
Confidence 233334455665555433 222346789999
No 21
>PRK13604 luxD acyl transferase; Provisional
Probab=88.72 E-value=3.4 Score=41.06 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=61.6
Q ss_pred ceEeccEEEeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCC--C-----CChHHHHHHHHHH
Q 019058 74 YQRLGSCLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNV--T-----FDHANAANQVYER 146 (346)
Q Consensus 74 w~r~~~~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~--t-----FDH~~iA~ev~~~ 146 (346)
=.++.+||..|.-+...|+.+|=+.-|.-. . .-.|..+-+.|+++||.|+..=|.- | |.+...... ...
T Consensus 19 G~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~-~--~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t~s~g-~~D 94 (307)
T PRK13604 19 GQSIRVWETLPKENSPKKNNTILIASGFAR-R--MDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFTMSIG-KNS 94 (307)
T ss_pred CCEEEEEEEcCcccCCCCCCEEEEeCCCCC-C--hHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCccccc-HHH
Confidence 356777887764223456666666555433 2 3459999999999999999876431 2 211222222 345
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhh
Q 019058 147 FNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQ 198 (346)
Q Consensus 147 F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~ 198 (346)
-..+++.+.+.+. -+++.+||| ||.....
T Consensus 95 l~aaid~lk~~~~------------~~I~LiG~S-----------mGgava~ 123 (307)
T PRK13604 95 LLTVVDWLNTRGI------------NNLGLIAAS-----------LSARIAY 123 (307)
T ss_pred HHHHHHHHHhcCC------------CceEEEEEC-----------HHHHHHH
Confidence 5567777765321 268999999 8887753
No 22
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=88.00 E-value=0.76 Score=40.65 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=25.4
Q ss_pred CcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCC
Q 019058 91 PRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNV 132 (346)
Q Consensus 91 P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~ 132 (346)
|.=++|-.||.- ..|+.|.+.|.+.++.|.+..+..
T Consensus 2 ~lf~~p~~gG~~------~~y~~la~~l~~~~~~v~~i~~~~ 37 (229)
T PF00975_consen 2 PLFCFPPAGGSA------SSYRPLARALPDDVIGVYGIEYPG 37 (229)
T ss_dssp EEEEESSTTCSG------GGGHHHHHHHTTTEEEEEEECSTT
T ss_pred eEEEEcCCccCH------HHHHHHHHhCCCCeEEEEEEecCC
Confidence 445566677732 368999999988777788776654
No 23
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=87.82 E-value=0.46 Score=45.98 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=48.1
Q ss_pred CcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCCCCChHHHHHHH---------HHHHHHHHHHHHhcCCCC
Q 019058 91 PRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNVTFDHANAANQV---------YERFNSCLDYVLSTGLPD 161 (346)
Q Consensus 91 P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~tFDH~~iA~ev---------~~~F~~~~~~L~~~g~~~ 161 (346)
|+|+|..+=|. .=-...|.+|.+.|+.+||.|++. ||-...++- +..|..-++.+.+.-..
T Consensus 33 ~~g~Vvl~HG~---~Eh~~ry~~la~~l~~~G~~V~~~------D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~- 102 (298)
T COG2267 33 PKGVVVLVHGL---GEHSGRYEELADDLAARGFDVYAL------DLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAE- 102 (298)
T ss_pred CCcEEEEecCc---hHHHHHHHHHHHHHHhCCCEEEEe------cCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhc-
Confidence 44888777653 234567999999999999999874 444433332 45555555555443110
Q ss_pred CCCCCCCCCCCCeeEecCC
Q 019058 162 ANLTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 162 ~gl~~~~~~~lPv~gVGHS 180 (346)
...++|+|-+|||
T Consensus 103 ------~~~~~p~~l~gHS 115 (298)
T COG2267 103 ------PDPGLPVFLLGHS 115 (298)
T ss_pred ------cCCCCCeEEEEeC
Confidence 0245899999999
No 24
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=86.26 E-value=1.4 Score=45.58 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=56.0
Q ss_pred ccceEe-ccEEEeCCCCC-CCCcEEEEeeccc-cccccchhhHHHHHHHHHhCCcEE----EEecCCCCCChHHHHHHHH
Q 019058 72 KIYQRL-GSCLIIPPLNG-KKPRAIIKFLGGA-FIGAVPEVTYSYLKELLAKEGFLV----ISVPYNVTFDHANAANQVY 144 (346)
Q Consensus 72 ~~w~r~-~~~~vl~PP~~-~~P~gVIhFiGGA-fvGa~PqitYr~LLE~La~~Gy~V----iAtPy~~tFDH~~iA~ev~ 144 (346)
+..+.. .++-+.. |.. ..-.+| ++|-=. +++....-.|..+++.|.+.||.+ .+-||.... .....+..
T Consensus 70 ~~~~~~~~gv~i~v-p~~~~g~~~i-~~ldp~~~~~~~~~~~~~~li~~L~~~GY~~~~dL~g~gYDwR~--~~~~~~~~ 145 (440)
T PLN02733 70 GKTVSLDPKTEIVV-PDDRYGLYAI-DILDPDVIIRLDEVYYFHDMIEQLIKWGYKEGKTLFGFGYDFRQ--SNRLPETM 145 (440)
T ss_pred CceecCCCCceEEc-CCCCCCceee-EEecCccccCcchHHHHHHHHHHHHHcCCccCCCcccCCCCccc--cccHHHHH
Confidence 344555 3444443 321 113444 554332 234445578999999999999985 455665322 11112333
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhh
Q 019058 145 ERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQ 198 (346)
Q Consensus 145 ~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~ 198 (346)
+++...++.+.+. ....|++.|||| ||+.+.+
T Consensus 146 ~~Lk~lIe~~~~~-----------~g~~kV~LVGHS-----------MGGlva~ 177 (440)
T PLN02733 146 DGLKKKLETVYKA-----------SGGKKVNIISHS-----------MGGLLVK 177 (440)
T ss_pred HHHHHHHHHHHHH-----------cCCCCEEEEEEC-----------HhHHHHH
Confidence 4444444444432 122589999999 8887665
No 25
>PLN02965 Probable pheophorbidase
Probab=85.68 E-value=5.3 Score=36.25 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=27.9
Q ss_pred CcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecC
Q 019058 91 PRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPY 130 (346)
Q Consensus 91 P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy 130 (346)
|...|=||=|++.. +-.|+.+++.|+++||.|||.-+
T Consensus 2 ~~~~vvllHG~~~~---~~~w~~~~~~L~~~~~~via~Dl 38 (255)
T PLN02965 2 PEIHFVFVHGASHG---AWCWYKLATLLDAAGFKSTCVDL 38 (255)
T ss_pred CceEEEEECCCCCC---cCcHHHHHHHHhhCCceEEEecC
Confidence 33446677677643 34689999999999999999976
No 26
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=85.30 E-value=6.1 Score=37.09 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCC
Q 019058 86 LNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNV 132 (346)
Q Consensus 86 P~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~ 132 (346)
|++.+| .|-|+=|++-.+ -.|..+.+.|.++||.||+..+.-
T Consensus 14 ~~~~~p--~vvliHG~~~~~---~~w~~~~~~L~~~g~~vi~~dl~g 55 (273)
T PLN02211 14 PNRQPP--HFVLIHGISGGS---WCWYKIRCLMENSGYKVTCIDLKS 55 (273)
T ss_pred ccCCCC--eEEEECCCCCCc---CcHHHHHHHHHhCCCEEEEecccC
Confidence 544444 456676755433 378999999999999999987753
No 27
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=85.13 E-value=4.6 Score=45.01 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=26.3
Q ss_pred EEEeeccccccccchhhHHHHHHHHHhCCcEEEEecC
Q 019058 94 IIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPY 130 (346)
Q Consensus 94 VIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy 130 (346)
+|.|+=|..=.. -.|+.+.+.|+++||.||+.=+
T Consensus 451 ~VVllHG~~g~~---~~~~~lA~~La~~Gy~VIaiDl 484 (792)
T TIGR03502 451 VVIYQHGITGAK---ENALAFAGTLAAAGVATIAIDH 484 (792)
T ss_pred EEEEeCCCCCCH---HHHHHHHHHHHhCCcEEEEeCC
Confidence 666766654332 3789999999999999999865
No 28
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=84.98 E-value=4.9 Score=38.03 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=53.6
Q ss_pred CCCcEEEEeeccccccccchhhHHHHHHHHH-hCCcEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 019058 89 KKPRAIIKFLGGAFIGAVPEVTYSYLKELLA-KEGFLVISVPYNVTFDHANAANQVYERFNSCLDYVLSTGLPDANLTPD 167 (346)
Q Consensus 89 ~~P~gVIhFiGGAfvGa~PqitYr~LLE~La-~~Gy~ViAtPy~~tFDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~ 167 (346)
.....||++=||.|+.-.+.-. +.++..++ ..|+.|++.=|...=.| .....+.+-+ ++++.+.+... ++|
T Consensus 77 ~~~p~vly~HGGg~~~g~~~~~-~~~~~~~~~~~g~~vv~vdYrlaPe~-~~p~~~~d~~-~a~~~l~~~~~-~~g---- 148 (312)
T COG0657 77 ATAPVVLYLHGGGWVLGSLRTH-DALVARLAAAAGAVVVSVDYRLAPEH-PFPAALEDAY-AAYRWLRANAA-ELG---- 148 (312)
T ss_pred CCCcEEEEEeCCeeeecChhhh-HHHHHHHHHHcCCEEEecCCCCCCCC-CCCchHHHHH-HHHHHHHhhhH-hhC----
Confidence 3458899999999998877654 66777775 67999999988876666 2222232222 24444444321 222
Q ss_pred CCCCCCeeEecCC
Q 019058 168 DLVNLPIYSVGHR 180 (346)
Q Consensus 168 ~~~~lPv~gVGHS 180 (346)
.+.-.+...|||
T Consensus 149 -~dp~~i~v~GdS 160 (312)
T COG0657 149 -IDPSRIAVAGDS 160 (312)
T ss_pred -CCccceEEEecC
Confidence 233478999999
No 29
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=83.51 E-value=3.4 Score=33.33 Aligned_cols=62 Identities=26% Similarity=0.381 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhCCcEEEEecC--CCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCcc
Q 019058 109 VTYSYLKELLAKEGFLVISVPY--NVTFDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAV 186 (346)
Q Consensus 109 itYr~LLE~La~~Gy~ViAtPy--~~tFDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~Av 186 (346)
-.|..+.+.|+++||.|+..=| ...-++..-+.++++..+ .. . ...-+++-+|||
T Consensus 13 ~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~---------~~~~~i~l~G~S------ 69 (145)
T PF12695_consen 13 RDYQPLAEALAEQGYAVVAFDYPGHGDSDGADAVERVLADIR-------AG-Y---------PDPDRIILIGHS------ 69 (145)
T ss_dssp HHHHHHHHHHHHTTEEEEEESCTTSTTSHHSHHHHHHHHHHH-------HH-H---------CTCCEEEEEEET------
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCccchhHHHHHHHHHHH-------hh-c---------CCCCcEEEEEEc------
Confidence 3489999999999999998844 334433343333333332 11 0 122589999999
Q ss_pred chhhhhchhhhh
Q 019058 187 PYFEQLGPLVNQ 198 (346)
Q Consensus 187 P~f~~LGckL~~ 198 (346)
+|..+..
T Consensus 70 -----~Gg~~a~ 76 (145)
T PF12695_consen 70 -----MGGAIAA 76 (145)
T ss_dssp -----HHHHHHH
T ss_pred -----cCcHHHH
Confidence 8886554
No 30
>PRK10985 putative hydrolase; Provisional
Probab=82.90 E-value=5 Score=38.44 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCC---------ChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCC
Q 019058 110 TYSYLKELLAKEGFLVISVPYNVTF---------DHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 110 tYr~LLE~La~~Gy~ViAtPy~~tF---------DH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS 180 (346)
..+.+.+.|.++||.|++.-|.--- .|.. ..+....+++.+.+. ....|++.+|||
T Consensus 75 ~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~~~~~~----~~~D~~~~i~~l~~~-----------~~~~~~~~vG~S 139 (324)
T PRK10985 75 YAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHRIYHSG----ETEDARFFLRWLQRE-----------FGHVPTAAVGYS 139 (324)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcceECCC----chHHHHHHHHHHHHh-----------CCCCCEEEEEec
Confidence 3467899999999999998775210 1111 123344455556543 112489999999
No 31
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=82.80 E-value=4 Score=39.47 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCcEEEEecCCC-C--CChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCC
Q 019058 111 YSYLKELLAKEGFLVISVPYNV-T--FDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 111 Yr~LLE~La~~Gy~ViAtPy~~-t--FDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS 180 (346)
++.+.+.|+++||.|++.-|.. + -.+....+-+......+++.+.+.. ..-+++.+|||
T Consensus 83 ~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~-----------~~~~i~lvGhS 144 (350)
T TIGR01836 83 DRSLVRGLLERGQDVYLIDWGYPDRADRYLTLDDYINGYIDKCVDYICRTS-----------KLDQISLLGIC 144 (350)
T ss_pred CchHHHHHHHCCCeEEEEeCCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHh-----------CCCcccEEEEC
Confidence 3789999999999999986643 1 1122223333333556677776541 11478999999
No 32
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=82.33 E-value=5.5 Score=33.56 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=23.8
Q ss_pred EEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC
Q 019058 95 IKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 95 IhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
|-|+-|.. . ..-.|+.+.+.|+ +||.|++.-+.
T Consensus 4 vv~~hG~~--~-~~~~~~~~~~~L~-~~~~v~~~d~~ 36 (251)
T TIGR03695 4 LVFLHGFL--G-SGADWQALIELLG-PHFRCLAIDLP 36 (251)
T ss_pred EEEEcCCC--C-chhhHHHHHHHhc-ccCeEEEEcCC
Confidence 45555642 2 2337999999999 89999998664
No 33
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=82.31 E-value=5.1 Score=33.22 Aligned_cols=22 Identities=32% Similarity=0.461 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHhCCcEEEEecCC
Q 019058 109 VTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 109 itYr~LLE~La~~Gy~ViAtPy~ 131 (346)
-.|+.+.+.|+ +||.|++.=+.
T Consensus 12 ~~~~~~~~~l~-~~~~v~~~d~~ 33 (228)
T PF12697_consen 12 ESWDPLAEALA-RGYRVIAFDLP 33 (228)
T ss_dssp GGGHHHHHHHH-TTSEEEEEECT
T ss_pred HHHHHHHHHHh-CCCEEEEEecC
Confidence 67888999995 89999998554
No 34
>PRK10673 acyl-CoA esterase; Provisional
Probab=81.15 E-value=11 Score=33.44 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=30.2
Q ss_pred EeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC
Q 019058 82 IIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 82 vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
...+|++...+-.|-||-|. .|. .-.|..+++.|++ +|.||++-+.
T Consensus 6 ~~~~~~~~~~~~~iv~lhG~-~~~--~~~~~~~~~~l~~-~~~vi~~D~~ 51 (255)
T PRK10673 6 RAQTAQNPHNNSPIVLVHGL-FGS--LDNLGVLARDLVN-DHDIIQVDMR 51 (255)
T ss_pred eeccCCCCCCCCCEEEECCC-CCc--hhHHHHHHHHHhh-CCeEEEECCC
Confidence 33334443344457788785 232 2479999999975 6999998664
No 35
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=79.97 E-value=19 Score=30.55 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=23.2
Q ss_pred EEEeeccccccccchhhHHHHHHHHHhCCcEEEEec
Q 019058 94 IIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVP 129 (346)
Q Consensus 94 VIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtP 129 (346)
+|-|++|. |.. .-.|+.+++.|. +||.|++.=
T Consensus 15 ~li~~hg~--~~~-~~~~~~~~~~l~-~~~~v~~~d 46 (251)
T TIGR02427 15 VLVFINSL--GTD-LRMWDPVLPALT-PDFRVLRYD 46 (251)
T ss_pred eEEEEcCc--ccc-hhhHHHHHHHhh-cccEEEEec
Confidence 66788884 433 346788999886 589999863
No 36
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=75.54 E-value=7.8 Score=42.25 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=46.2
Q ss_pred cEEEEeeccccccccchhhHHHHHHHHHhCCc---EEEEecCCCCCC--hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 019058 92 RAIIKFLGGAFIGAVPEVTYSYLKELLAKEGF---LVISVPYNVTFD--HANAANQVYERFNSCLDYVLSTGLPDANLTP 166 (346)
Q Consensus 92 ~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy---~ViAtPy~~tFD--H~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~ 166 (346)
.++=.|+.|-| .+..|+|.|++.|| .+.+.||..-+- ....-++-..++....+...+.
T Consensus 146 ~AvD~f~pgY~-------vw~kLIe~L~~iGY~~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~--------- 209 (642)
T PLN02517 146 VAADYFAPGYF-------VWAVLIANLARIGYEEKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVAT--------- 209 (642)
T ss_pred heehhccccce-------eHHHHHHHHHHcCCCCCceeecccccccCccchhhhhHHHHHHHHHHHHHHHH---------
Confidence 34445666654 45889999999998 588889986322 2222233333333333333221
Q ss_pred CCCCCCCeeEecCCCCcCccchhhhhchhhhh
Q 019058 167 DDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQ 198 (346)
Q Consensus 167 ~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~ 198 (346)
-..-+++.|||| ||+.+.+
T Consensus 210 --nggkKVVLV~HS-----------MGglv~l 228 (642)
T PLN02517 210 --NGGKKVVVVPHS-----------MGVLYFL 228 (642)
T ss_pred --cCCCeEEEEEeC-----------CchHHHH
Confidence 113589999999 8776554
No 37
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=72.82 E-value=32 Score=30.52 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=24.6
Q ss_pred EEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC
Q 019058 94 IIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 94 VIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
+|-|+-|. |.. .-.|+.+.+.|++ +|.|++.-+.
T Consensus 30 ~vv~~hG~--~~~-~~~~~~~~~~l~~-~~~vi~~D~~ 63 (278)
T TIGR03056 30 LLLLLHGT--GAS-THSWRDLMPPLAR-SFRVVAPDLP 63 (278)
T ss_pred eEEEEcCC--CCC-HHHHHHHHHHHhh-CcEEEeecCC
Confidence 57777774 222 4468899999976 5999998665
No 38
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=72.54 E-value=15 Score=34.99 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhC---CcEEEEecCCC------------CCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCe
Q 019058 110 TYSYLKELLAKE---GFLVISVPYNV------------TFDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPI 174 (346)
Q Consensus 110 tYr~LLE~La~~---Gy~ViAtPy~~------------tFDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv 174 (346)
+|.-||+.|.++ .|.|.+..+.- .-+-..+.++|..+.+-..+.+...+ ..+.++
T Consensus 17 fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~----------~~~~~l 86 (266)
T PF10230_consen 17 FYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKN----------KPNVKL 86 (266)
T ss_pred HHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhc----------CCCCcE
Confidence 599999999955 78999987661 23456788888888874443333211 245799
Q ss_pred eEecCC
Q 019058 175 YSVGHR 180 (346)
Q Consensus 175 ~gVGHS 180 (346)
+-+|||
T Consensus 87 iLiGHS 92 (266)
T PF10230_consen 87 ILIGHS 92 (266)
T ss_pred EEEeCc
Confidence 999999
No 39
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=71.05 E-value=12 Score=33.52 Aligned_cols=41 Identities=10% Similarity=-0.013 Sum_probs=22.3
Q ss_pred ChHHHHHHHHhcc-----CccceeeEEecCCC---CCCcHHHHHHhchh
Q 019058 266 TPSENLDCFKKSY-----NVQHTLLVKFSFDT---IDQTDLLEETLKPR 306 (346)
Q Consensus 266 sPeET~~LI~~sY-----~v~rnLLIkF~dD~---IDqT~~L~~~L~~r 306 (346)
.+++-.++++..+ ..+..+++.=++|. ++....+.+.|+.-
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 149 TAASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CHHHHHHHHhccCCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 3445555554321 23444566666666 45556677777764
No 40
>PRK10115 protease 2; Provisional
Probab=70.69 E-value=89 Score=34.11 Aligned_cols=207 Identities=13% Similarity=0.146 Sum_probs=108.5
Q ss_pred eEeccEEEeCCCC--CCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCCCCCh----HHHHH-----HH
Q 019058 75 QRLGSCLIIPPLN--GKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNVTFDH----ANAAN-----QV 143 (346)
Q Consensus 75 ~r~~~~~vl~PP~--~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~tFDH----~~iA~-----ev 143 (346)
.+|..+++.+|+. ..++=.|++--||--....|...+.+ ..|+++||+|+..=|.=+-.+ ....+ ..
T Consensus 427 ~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~--~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~ 504 (686)
T PRK10115 427 VEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSR--LSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNT 504 (686)
T ss_pred CEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHH--HHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCc
Confidence 5566677776631 22334677777876565567655554 579999999988877654322 22111 23
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhhcccccccchhHHhhhcccchhHHHH
Q 019058 144 YERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQMMPIVEASPVYSMARNASGDAWKLL 223 (346)
Q Consensus 144 ~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~L~p~~~asp~~~~~R~~~~~~~k~l 223 (346)
++.|-.|.+.|.++|. ...--+...|-| -|..|...+ +...| +. |+..
T Consensus 505 ~~D~~a~~~~Lv~~g~---------~d~~rl~i~G~S-----------~GG~l~~~~--~~~~P--dl--------f~A~ 552 (686)
T PRK10115 505 FNDYLDACDALLKLGY---------GSPSLCYGMGGS-----------AGGMLMGVA--INQRP--EL--------FHGV 552 (686)
T ss_pred HHHHHHHHHHHHHcCC---------CChHHeEEEEEC-----------HHHHHHHHH--HhcCh--hh--------eeEE
Confidence 5677788999988765 222345677888 566554321 00000 11 1111
Q ss_pred hhhhhccCCCCchHHHHHhHHHH--hhhhhhhhhccCCcccccCChHHHHHHHHhc---cCc-----cceeeEEecCCC-
Q 019058 224 LNTAEALIPGSDMESLVSLNNFV--DQLPSVFGQVTEGISEFKPTPSENLDCFKKS---YNV-----QHTLLVKFSFDT- 292 (346)
Q Consensus 224 ~n~ag~l~~~~~~~i~~sf~nfv--dqLp~~~~~va~G~~EF~PsPeET~~LI~~s---Y~v-----~rnLLIkF~dD~- 292 (346)
...++ +..+..++ +++|....+..... .|.-+|..+.++++ .++ |-.|++.=.+|.
T Consensus 553 v~~vp----------~~D~~~~~~~~~~p~~~~~~~e~G---~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~R 619 (686)
T PRK10115 553 IAQVP----------FVDVVTTMLDESIPLTTGEFEEWG---NPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQ 619 (686)
T ss_pred EecCC----------chhHhhhcccCCCCCChhHHHHhC---CCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCC
Confidence 00011 11111222 34554333322211 35534455665532 222 445666888877
Q ss_pred --CCCcHHHHHHhchhccccCCcee-EEeecCCCcccCcc
Q 019058 293 --IDQTDLLEETLKPRMESIGGTVE-KVQLNGNHITPCIQ 329 (346)
Q Consensus 293 --IDqT~~L~~~L~~r~~s~~~~v~-~~~LpGnHLTPl~q 329 (346)
.-|+..+.+.|+.+-.. ...+. +....++|--.-++
T Consensus 620 V~~~~~~k~~a~Lr~~~~~-~~~vl~~~~~~~GHg~~~~r 658 (686)
T PRK10115 620 VQYWEPAKWVAKLRELKTD-DHLLLLCTDMDSGHGGKSGR 658 (686)
T ss_pred cCchHHHHHHHHHHhcCCC-CceEEEEecCCCCCCCCcCH
Confidence 67888899999986221 11122 23356999855444
No 41
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=69.96 E-value=11 Score=33.25 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCChHH---------HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCC
Q 019058 111 YSYLKELLAKEGFLVISVPYNVTFDHAN---------AANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRP 181 (346)
Q Consensus 111 Yr~LLE~La~~Gy~ViAtPy~~tFDH~~---------iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~ 181 (346)
|++-.+-|+++||+|+..=|.-+-.+-. ......+....+++.|.+.+. ++.--+..+|||
T Consensus 3 f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~---------iD~~ri~i~G~S- 72 (213)
T PF00326_consen 3 FNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYY---------IDPDRIGIMGHS- 72 (213)
T ss_dssp -SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTS---------EEEEEEEEEEET-
T ss_pred eeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhcccc---------ccceeEEEEccc-
Confidence 5577888999999999999997654222 223345556677888877532 333467899999
Q ss_pred CcCccchhhhhchhhhhcc
Q 019058 182 ATEAVPYFEQLGPLVNQMM 200 (346)
Q Consensus 182 a~~AvP~f~~LGckL~~L~ 200 (346)
.|.-+..++
T Consensus 73 ----------~GG~~a~~~ 81 (213)
T PF00326_consen 73 ----------YGGYLALLA 81 (213)
T ss_dssp ----------HHHHHHHHH
T ss_pred ----------ccccccchh
Confidence 877666543
No 42
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=68.83 E-value=32 Score=34.63 Aligned_cols=81 Identities=25% Similarity=0.435 Sum_probs=56.1
Q ss_pred cEEEEeecccc-ccccchhhHHHHHHHHHhC-CcEEEEecCCCCCChHHHH--HHHHHHHHHHHHH-HHhcCCCCCCCCC
Q 019058 92 RAIIKFLGGAF-IGAVPEVTYSYLKELLAKE-GFLVISVPYNVTFDHANAA--NQVYERFNSCLDY-VLSTGLPDANLTP 166 (346)
Q Consensus 92 ~gVIhFiGGAf-vGa~PqitYr~LLE~La~~-Gy~ViAtPy~~tFDH~~iA--~ev~~~F~~~~~~-L~~~g~~~~gl~~ 166 (346)
..||.|=||.| +|++..-.|..|+.+++++ +-+||++=|...=.|---| +.+|....-++.. +.+.|.
T Consensus 91 p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~------- 163 (336)
T KOG1515|consen 91 PVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFPAAYDDGWAALKWVLKNSWLKLGA------- 163 (336)
T ss_pred eEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCCccchHHHHHHHHHHHhHHHHhCC-------
Confidence 57888988888 5788999999999999755 9999999998765443222 3444444444443 444333
Q ss_pred CCCCCCCeeEecCCCC
Q 019058 167 DDLVNLPIYSVGHRPA 182 (346)
Q Consensus 167 ~~~~~lPv~gVGHS~a 182 (346)
|... +|..|=|.|
T Consensus 164 -D~~r--v~l~GDSaG 176 (336)
T KOG1515|consen 164 -DPSR--VFLAGDSAG 176 (336)
T ss_pred -Cccc--EEEEccCcc
Confidence 3333 899999854
No 43
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=68.28 E-value=21 Score=31.11 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=25.1
Q ss_pred ceeeEEecCCCCCCcHHHHHHhchhccccCCceeEEeec-CCCcccCcc
Q 019058 282 HTLLVKFSFDTIDQTDLLEETLKPRMESIGGTVEKVQLN-GNHITPCIQ 329 (346)
Q Consensus 282 rnLLIkF~dD~IDqT~~L~~~L~~r~~s~~~~v~~~~Lp-GnHLTPl~q 329 (346)
.+|+|.=++|.+. ....+.+... ++ ..+...++ ++|.....+
T Consensus 233 P~lii~G~~D~~~--~~~~~~~~~~---~~-~~~~~~~~~~gH~~~~e~ 275 (288)
T TIGR01250 233 PTLLTVGEFDTMT--PEAAREMQEL---IA-GSRLVVFPDGSHMTMIED 275 (288)
T ss_pred CEEEEecCCCccC--HHHHHHHHHh---cc-CCeEEEeCCCCCCcccCC
Confidence 4667777777663 3444445443 22 34566776 789877753
No 44
>PRK00870 haloalkane dehalogenase; Provisional
Probab=67.34 E-value=22 Score=33.16 Aligned_cols=24 Identities=25% Similarity=0.276 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHhCCcEEEEecCC
Q 019058 108 EVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 108 qitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
.-.|+.+++.|+++||.||+.=+.
T Consensus 59 ~~~w~~~~~~L~~~gy~vi~~Dl~ 82 (302)
T PRK00870 59 SYLYRKMIPILAAAGHRVIAPDLI 82 (302)
T ss_pred hhhHHHHHHHHHhCCCEEEEECCC
Confidence 346899999999999999998543
No 45
>PLN02511 hydrolase
Probab=66.86 E-value=23 Score=35.25 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCcEEEEecCCC---------CCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCC
Q 019058 111 YSYLKELLAKEGFLVISVPYNV---------TFDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRP 181 (346)
Q Consensus 111 Yr~LLE~La~~Gy~ViAtPy~~---------tFDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~ 181 (346)
++.+...+.++||.||+.=+.- .+.|...++++ +.+++.|... ....|++.||||.
T Consensus 118 ~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl----~~~i~~l~~~-----------~~~~~~~lvG~Sl 182 (388)
T PLN02511 118 VRHMLLRARSKGWRVVVFNSRGCADSPVTTPQFYSASFTGDL----RQVVDHVAGR-----------YPSANLYAAGWSL 182 (388)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCCCCCCCcCEEcCCchHHH----HHHHHHHHHH-----------CCCCCEEEEEech
Confidence 3678888889999999985532 23333333333 4455555543 1125899999993
No 46
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=66.51 E-value=55 Score=29.15 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=54.2
Q ss_pred EEEeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCCCC----ChHHHHH------------HH
Q 019058 80 CLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNVTF----DHANAAN------------QV 143 (346)
Q Consensus 80 ~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~tF----DH~~iA~------------ev 143 (346)
.++..|.++ .|+..|=+|=++| |-. -.++.+-++|+++||+|++-=+=.+- .....+. ++
T Consensus 3 ay~~~P~~~-~~~~~Vvv~~d~~-G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (218)
T PF01738_consen 3 AYVARPEGG-GPRPAVVVIHDIF-GLN--PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQV 78 (218)
T ss_dssp EEEEEETTS-SSEEEEEEE-BTT-BS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHH
T ss_pred EEEEeCCCC-CCCCEEEEEcCCC-CCc--hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHH
Confidence 456655444 4543333333332 333 56789999999999999998442221 2222222 33
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhhc
Q 019058 144 YERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQM 199 (346)
Q Consensus 144 ~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~L 199 (346)
.++...+++.|.+... ...-.+..+|.+ +|.++...
T Consensus 79 ~~~~~aa~~~l~~~~~---------~~~~kig~vGfc-----------~GG~~a~~ 114 (218)
T PF01738_consen 79 AADLQAAVDYLRAQPE---------VDPGKIGVVGFC-----------WGGKLALL 114 (218)
T ss_dssp HHHHHHHHHHHHCTTT---------CEEEEEEEEEET-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---------cCCCcEEEEEEe-----------cchHHhhh
Confidence 3444556777765421 234578889999 88887754
No 47
>PLN02442 S-formylglutathione hydrolase
Probab=66.50 E-value=1.2e+02 Score=28.77 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=26.3
Q ss_pred cceeeEEe-cCCCC-C---CcHHHHHHhchhccccCCceeEEeecC-CCc
Q 019058 281 QHTLLVKF-SFDTI-D---QTDLLEETLKPRMESIGGTVEKVQLNG-NHI 324 (346)
Q Consensus 281 ~rnLLIkF-~dD~I-D---qT~~L~~~L~~r~~s~~~~v~~~~LpG-nHL 324 (346)
...+||-- ++|.+ . ++..+.+.|+.. +..++...+|| +|-
T Consensus 217 ~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~----g~~~~~~~~pg~~H~ 262 (283)
T PLN02442 217 SATILIDQGEADKFLKEQLLPENFEEACKEA----GAPVTLRLQPGYDHS 262 (283)
T ss_pred CCCEEEEECCCCccccccccHHHHHHHHHHc----CCCeEEEEeCCCCcc
Confidence 33444444 55544 2 356788888874 45688999998 994
No 48
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=64.24 E-value=5.9 Score=35.54 Aligned_cols=154 Identities=19% Similarity=0.273 Sum_probs=77.3
Q ss_pred ccccchhhHHHHHHHHHhCCcEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCC
Q 019058 103 IGAVPEVTYSYLKELLAKEGFLVISVPYNVTFDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPA 182 (346)
Q Consensus 103 vGa~PqitYr~LLE~La~~Gy~ViAtPy~~tFDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a 182 (346)
=|+-|+=.|.+|=++|.+. +.|-. | ..|+-.+ +++...+++-.. ..+-|++-||||
T Consensus 8 ~~s~~~HW~~wl~~~l~~~-~~V~~-~---~~~~P~~-----~~W~~~l~~~i~------------~~~~~~ilVaHS-- 63 (171)
T PF06821_consen 8 GGSPPDHWQPWLERQLENS-VRVEQ-P---DWDNPDL-----DEWVQALDQAID------------AIDEPTILVAHS-- 63 (171)
T ss_dssp TSSTTTSTHHHHHHHHTTS-EEEEE-C-----TS--H-----HHHHHHHHHCCH------------C-TTTEEEEEET--
T ss_pred CCCCccHHHHHHHHhCCCC-eEEec-c---ccCCCCH-----HHHHHHHHHHHh------------hcCCCeEEEEeC--
Confidence 3566778999999999888 54443 2 2244433 223333322211 123479999999
Q ss_pred cCccchhhhhchhhhhcccccccchhHHhhhcccchhHHHHhhhhhc-cCCCCchHHHHHhHHHHhhhhhhhhhccCCcc
Q 019058 183 TEAVPYFEQLGPLVNQMMPIVEASPVYSMARNASGDAWKLLLNTAEA-LIPGSDMESLVSLNNFVDQLPSVFGQVTEGIS 261 (346)
Q Consensus 183 ~~AvP~f~~LGckL~~L~p~~~asp~~~~~R~~~~~~~k~l~n~ag~-l~~~~~~~i~~sf~nfvdqLp~~~~~va~G~~ 261 (346)
|||..-+-. ++ .....+. .|. |.++.+.+ +-....|. ..
T Consensus 64 ---------LGc~~~l~~--l~----~~~~~~v-----------~g~lLVAp~~~~------~~~~~~~~--------~~ 103 (171)
T PF06821_consen 64 ---------LGCLTALRW--LA----EQSQKKV-----------AGALLVAPFDPD------DPEPFPPE--------LD 103 (171)
T ss_dssp ---------HHHHHHHHH--HH----HTCCSSE-----------EEEEEES--SCG------CHHCCTCG--------GC
T ss_pred ---------HHHHHHHHH--Hh----hcccccc-----------cEEEEEcCCCcc------cccchhhh--------cc
Confidence 999765422 00 0000111 111 23333332 01122221 14
Q ss_pred cccCChHHHHHHHHhccCccceeeEEecCCCCC---CcHHHHHHhchhccccCCceeEEeec-CCCcccCcccccchhhh
Q 019058 262 EFKPTPSENLDCFKKSYNVQHTLLVKFSFDTID---QTDLLEETLKPRMESIGGTVEKVQLN-GNHITPCIQVIHANSIF 337 (346)
Q Consensus 262 EF~PsPeET~~LI~~sY~v~rnLLIkF~dD~ID---qT~~L~~~L~~r~~s~~~~v~~~~Lp-GnHLTPl~qd~~~~~~~ 337 (346)
.|.|-|.+...+.. .+|-=+||.+- .+..|++.|..+ +..++ |+|+..-..--+|+...
T Consensus 104 ~f~~~p~~~l~~~~--------~viaS~nDp~vp~~~a~~~A~~l~a~---------~~~~~~~GHf~~~~G~~~~p~~~ 166 (171)
T PF06821_consen 104 GFTPLPRDPLPFPS--------IVIASDNDPYVPFERAQRLAQRLGAE---------LIILGGGGHFNAASGFGPWPEGL 166 (171)
T ss_dssp CCTTSHCCHHHCCE--------EEEEETTBSSS-HHHHHHHHHHHT-E---------EEEETS-TTSSGGGTHSS-HHHH
T ss_pred ccccCcccccCCCe--------EEEEcCCCCccCHHHHHHHHHHcCCC---------eEECCCCCCcccccCCCchHHHH
Confidence 56776665443222 56666666644 344466666553 45555 99999988877887654
No 49
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=63.53 E-value=17 Score=35.16 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=41.9
Q ss_pred HHHHHHHhCCcEEEEecCCC---CC-ChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCcc
Q 019058 113 YLKELLAKEGFLVISVPYNV---TF-DHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAV 186 (346)
Q Consensus 113 ~LLE~La~~Gy~ViAtPy~~---tF-DH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~Av 186 (346)
.+|+.+.++||+|+++=|.= .| +....|..++..-+.++ .+.. ..|++ .+-+++.+|||.|.-|-
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Glg~~y~~~~~~a~avLD~vRAA~-~~~~----~~gl~----~~~~v~l~GySqGG~Aa 85 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGLGTPYLNGRSEAYAVLDAVRAAR-NLPP----KLGLS----PSSRVALWGYSQGGQAA 85 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCCCCcccCcHhHHHHHHHHHHHHH-hccc----ccCCC----CCCCEEEEeeCccHHHH
Confidence 46788889999999997631 22 55677777776655333 3222 12222 34689999999775543
No 50
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=61.73 E-value=35 Score=31.27 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=26.4
Q ss_pred CCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC
Q 019058 88 GKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 88 ~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
+.+|.=+||=+||.. -.|+.+++.|.+ +|.||+.=+.
T Consensus 24 ~~~plvllHG~~~~~------~~w~~~~~~L~~-~~~vi~~Dl~ 60 (276)
T TIGR02240 24 GLTPLLIFNGIGANL------ELVFPFIEALDP-DLEVIAFDVP 60 (276)
T ss_pred CCCcEEEEeCCCcch------HHHHHHHHHhcc-CceEEEECCC
Confidence 345777778555443 267889999876 6999998665
No 51
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=60.99 E-value=19 Score=38.36 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=46.7
Q ss_pred CCCcEEEEe-ecccccc-ccchhhHHHHHHHHHhCCcEEEEecCCC-CCChH--HHHHHHHHHHHHHHHHHHhcCCCCCC
Q 019058 89 KKPRAIIKF-LGGAFIG-AVPEVTYSYLKELLAKEGFLVISVPYNV-TFDHA--NAANQVYERFNSCLDYVLSTGLPDAN 163 (346)
Q Consensus 89 ~~P~gVIhF-iGGAfvG-a~PqitYr~LLE~La~~Gy~ViAtPy~~-tFDH~--~iA~ev~~~F~~~~~~L~~~g~~~~g 163 (346)
++|.=+||= |.+.|+= -.| .+.|.+.|.++||.|+++-+.. +..|. ...+-+.+....+++.+.+. .|
T Consensus 188 ~~PlLiVp~~i~k~yilDL~p---~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~----~g 260 (532)
T TIGR01838 188 KTPLLIVPPWINKYYILDLRP---QNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAI----TG 260 (532)
T ss_pred CCcEEEECcccccceeeeccc---chHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHh----cC
Confidence 456656652 3333332 122 3789999999999998887764 43332 22344444455667776642 11
Q ss_pred CCCCCCCCCCeeEecCC
Q 019058 164 LTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 164 l~~~~~~~lPv~gVGHS 180 (346)
.-++..+|||
T Consensus 261 -------~~kv~lvG~c 270 (532)
T TIGR01838 261 -------EKQVNCVGYC 270 (532)
T ss_pred -------CCCeEEEEEC
Confidence 1368999999
No 52
>COG5423 Predicted metal-binding protein [Function unknown]
Probab=60.37 E-value=15 Score=33.70 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=28.0
Q ss_pred ccCChHHHHHHHHhccCccceeeEEecCCCCCCcH
Q 019058 263 FKPTPSENLDCFKKSYNVQHTLLVKFSFDTIDQTD 297 (346)
Q Consensus 263 F~PsPeET~~LI~~sY~v~rnLLIkF~dD~IDqT~ 297 (346)
..||-+|.+++++.| ++-|||+|+-|+-+.-+
T Consensus 54 hvps~~EfreilkeY---r~alL~kfk~dt~~~ee 85 (167)
T COG5423 54 HVPSIEEFREILKEY---RRALLVKFKIDTSEDEE 85 (167)
T ss_pred CCCCHHHHHHHHHHH---hhhheEEEecCchhhHH
Confidence 479999999999986 57899999999987776
No 53
>PF07515 DUF1528: Protein of unknown function (DUF1528); InterPro: IPR011093 This entry contains proteins some of which are from pathogenic strains of Gammaproteobacteria. Though the function of these proteins is unknown, they could be involved in pathogenesis. This domain is found at the C terminus of proteins that contain a N-terminal metal-dependent phosphohydrolase (HD) region and are considered to be helicases/relaxases. ; PDB: 2IPQ_X 3KQ5_A.
Probab=58.92 E-value=6.2 Score=33.38 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=24.4
Q ss_pred CCcEEEEeeccccccccchhhHHHHHHH
Q 019058 90 KPRAIIKFLGGAFIGAVPEVTYSYLKEL 117 (346)
Q Consensus 90 ~P~gVIhFiGGAfvGa~PqitYr~LLE~ 117 (346)
.++|.||++-|..+=.+|.|+|+|+-|.
T Consensus 5 ~~~A~VH~V~~~vfLvsP~IF~~y~~e~ 32 (106)
T PF07515_consen 5 DPKAKVHIVAGGVFLVSPGIFQRYAQEH 32 (106)
T ss_dssp STT-SEEEETTEEEEETTCHHHHHHHH-
T ss_pred CCCCeEEEECCEEEEECHHHHHHHHHhc
Confidence 5789999999999999999999999886
No 54
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=55.14 E-value=91 Score=29.21 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=28.7
Q ss_pred cceeeEEec-CCC-CCC---cHHHHHHhchhccccCCceeEEeecC-CCccc
Q 019058 281 QHTLLVKFS-FDT-IDQ---TDLLEETLKPRMESIGGTVEKVQLNG-NHITP 326 (346)
Q Consensus 281 ~rnLLIkF~-dD~-IDq---T~~L~~~L~~r~~s~~~~v~~~~LpG-nHLTP 326 (346)
.-.++|-.. +|. +++ +..+.+.|+.. +..++....|| +|--.
T Consensus 211 ~~plli~~G~~D~~v~~~~~~~~~~~~l~~~----g~~v~~~~~~g~~H~f~ 258 (275)
T TIGR02821 211 HSTILIDQGTADQFLDEQLRPDAFEQACRAA----GQALTLRRQAGYDHSYY 258 (275)
T ss_pred CCCeeEeecCCCcccCccccHHHHHHHHHHc----CCCeEEEEeCCCCccch
Confidence 445666565 553 454 46799999875 35688899998 99643
No 55
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=53.85 E-value=32 Score=36.46 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhCCcE----EEEecCCC--CCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCc
Q 019058 110 TYSYLKELLAKEGFL----VISVPYNV--TFDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPAT 183 (346)
Q Consensus 110 tYr~LLE~La~~Gy~----ViAtPy~~--tFDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~ 183 (346)
..-.++|.|+.-||. +++.||.. ++--....++-+.++..-++...+. -..-|++.|+||
T Consensus 125 ~w~~~i~~lv~~GYe~~~~l~ga~YDwRls~~~~e~rd~yl~kLK~~iE~~~~~-----------~G~kkVvlisHS--- 190 (473)
T KOG2369|consen 125 YWHELIENLVGIGYERGKTLFGAPYDWRLSYHNSEERDQYLSKLKKKIETMYKL-----------NGGKKVVLISHS--- 190 (473)
T ss_pred HHHHHHHHHHhhCcccCceeeccccchhhccCChhHHHHHHHHHHHHHHHHHHH-----------cCCCceEEEecC---
Confidence 346789999988875 99999986 4433444444444444433333221 112599999999
Q ss_pred Cccchhhhhchhhhh
Q 019058 184 EAVPYFEQLGPLVNQ 198 (346)
Q Consensus 184 ~AvP~f~~LGckL~~ 198 (346)
||+.+-+
T Consensus 191 --------MG~l~~l 197 (473)
T KOG2369|consen 191 --------MGGLYVL 197 (473)
T ss_pred --------CccHHHH
Confidence 8876553
No 56
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=52.96 E-value=1.3e+02 Score=25.78 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHhCCcEEEEecCC
Q 019058 109 VTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 109 itYr~LLE~La~~Gy~ViAtPy~ 131 (346)
-.|..+++.|. +||.||+.-+.
T Consensus 27 ~~~~~~~~~l~-~~~~vi~~D~~ 48 (257)
T TIGR03611 27 SYWAPQLDVLT-QRFHVVTYDHR 48 (257)
T ss_pred hHHHHHHHHHH-hccEEEEEcCC
Confidence 35777777776 47999999654
No 57
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=52.78 E-value=1.8e+02 Score=30.77 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=26.4
Q ss_pred ceeeEEecCCCCCCcHHHHHHhchhccccCCceeEEeec-CCCcccC
Q 019058 282 HTLLVKFSFDTIDQTDLLEETLKPRMESIGGTVEKVQLN-GNHITPC 327 (346)
Q Consensus 282 rnLLIkF~dD~IDqT~~L~~~L~~r~~s~~~~v~~~~Lp-GnHLTPl 327 (346)
.+|+|-=++|.+= .....+.+..+ ++ ..++..++ .+|..++
T Consensus 420 PtLII~Ge~D~iv-P~~~~~~la~~---iP-~a~l~vI~~aGH~~~v 461 (481)
T PLN03087 420 DVAIFHGGDDELI-PVECSYAVKAK---VP-RARVKVIDDKDHITIV 461 (481)
T ss_pred CEEEEEECCCCCC-CHHHHHHHHHh---CC-CCEEEEeCCCCCcchh
Confidence 3677766666654 44455555555 33 35678888 5999996
No 58
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=48.92 E-value=61 Score=28.48 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=22.0
Q ss_pred EEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC
Q 019058 95 IKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 95 IhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
|-||=|.-- ....|+.+.+.| ++|.||+.=+.
T Consensus 5 vvllHG~~~---~~~~w~~~~~~l--~~~~vi~~D~~ 36 (242)
T PRK11126 5 LVFLHGLLG---SGQDWQPVGEAL--PDYPRLYIDLP 36 (242)
T ss_pred EEEECCCCC---ChHHHHHHHHHc--CCCCEEEecCC
Confidence 555555422 225889999988 37999998654
No 59
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=47.81 E-value=1.1e+02 Score=30.81 Aligned_cols=91 Identities=23% Similarity=0.272 Sum_probs=55.5
Q ss_pred eCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecC-----CCCCChHHHHHHHHHHHHHHHHHHHhc
Q 019058 83 IPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPY-----NVTFDHANAANQVYERFNSCLDYVLST 157 (346)
Q Consensus 83 l~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy-----~~tFDH~~iA~ev~~~F~~~~~~L~~~ 157 (346)
+..|...-.-=||-|+=|.++= .=.|..||.-++-.||.|||-=. ..+-|-...|-+|-+-...-++.++..
T Consensus 37 I~tP~~~G~yPVilF~HG~~l~---ns~Ys~lL~HIASHGfIVVAPQl~~~~~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~ 113 (307)
T PF07224_consen 37 IVTPSEAGTYPVILFLHGFNLY---NSFYSQLLAHIASHGFIVVAPQLYTLFPPDGQDEIKSAASVINWLPEGLQHVLPE 113 (307)
T ss_pred EecCCcCCCccEEEEeechhhh---hHHHHHHHHHHhhcCeEEEechhhcccCCCchHHHHHHHHHHHHHHhhhhhhCCC
Confidence 3334444445578888898887 67899999999999999999521 123444455555555544444444332
Q ss_pred CCCCCCCCCCCCCCCCeeEecCCCCcC
Q 019058 158 GLPDANLTPDDLVNLPIYSVGHRPATE 184 (346)
Q Consensus 158 g~~~~gl~~~~~~~lPv~gVGHS~a~~ 184 (346)
+. +.+.. -+--+|||-+.+
T Consensus 114 ~V------~~nl~--klal~GHSrGGk 132 (307)
T PF07224_consen 114 NV------EANLS--KLALSGHSRGGK 132 (307)
T ss_pred Cc------ccccc--eEEEeecCCccH
Confidence 21 11222 445789985543
No 60
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.73 E-value=37 Score=37.37 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=41.7
Q ss_pred CcEEEEecCCCCCChHHH-------HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhch
Q 019058 122 GFLVISVPYNVTFDHANA-------ANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGP 194 (346)
Q Consensus 122 Gy~ViAtPy~~tFDH~~i-------A~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGc 194 (346)
+..||+.=|....-||.- =+.+..+-+.-+++|+..|. -.+-|+.||||| ||.
T Consensus 478 ~~Rii~l~Y~Tsit~w~~~~p~e~~r~sl~~Rs~~lleql~~~~V---------G~~RPivwI~HS-----------mGG 537 (697)
T KOG2029|consen 478 KSRIIGLEYTTSITDWRARCPAEAHRRSLAARSNELLEQLQAAGV---------GDDRPIVWIGHS-----------MGG 537 (697)
T ss_pred cceEEEeecccchhhhcccCcccchhhHHHHHHHHHHHHHHHhcc---------CCCCceEEEecc-----------cch
Confidence 588999999988777765 44555666677778877554 125799999999 888
Q ss_pred hhh
Q 019058 195 LVN 197 (346)
Q Consensus 195 kL~ 197 (346)
+|.
T Consensus 538 Ll~ 540 (697)
T KOG2029|consen 538 LLA 540 (697)
T ss_pred HHH
Confidence 766
No 61
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=45.97 E-value=69 Score=31.33 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhCCcEEEEecCC
Q 019058 109 VTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 109 itYr~LLE~La~~Gy~ViAtPy~ 131 (346)
-.|+.+++.|++ +|.||+.=+.
T Consensus 102 ~~w~~~~~~L~~-~~~via~Dl~ 123 (360)
T PLN02679 102 PHWRRNIGVLAK-NYTVYAIDLL 123 (360)
T ss_pred HHHHHHHHHHhc-CCEEEEECCC
Confidence 478889999976 7999997444
No 62
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=45.00 E-value=68 Score=31.41 Aligned_cols=108 Identities=17% Similarity=0.274 Sum_probs=63.6
Q ss_pred HHHHHHHhCCcE--EEEec-CCCCCChHHHHHHHH-------------------HHHHHHHHHHHhcCCCCCCCCCCCCC
Q 019058 113 YLKELLAKEGFL--VISVP-YNVTFDHANAANQVY-------------------ERFNSCLDYVLSTGLPDANLTPDDLV 170 (346)
Q Consensus 113 ~LLE~La~~Gy~--ViAtP-y~~tFDH~~iA~ev~-------------------~~F~~~~~~L~~~g~~~~gl~~~~~~ 170 (346)
.-|.+|+++||- +|-.- ..+|-.+..+-++|. +.|+.|++++...-. .. -+
T Consensus 64 ~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~p-pl------~k 136 (265)
T COG4822 64 QALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIP-PL------NK 136 (265)
T ss_pred HHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcC-Cc------Cc
Confidence 457889999993 33332 345777777777774 356678888876522 21 12
Q ss_pred CCCeeEecCC--------------------------CCcCccchhhhhchhh-------hhcccccc-cc--hhHHhhhc
Q 019058 171 NLPIYSVGHR--------------------------PATEAVPYFEQLGPLV-------NQMMPIVE-AS--PVYSMARN 214 (346)
Q Consensus 171 ~lPv~gVGHS--------------------------~a~~AvP~f~~LGckL-------~~L~p~~~-as--p~~~~~R~ 214 (346)
+--+.-+||- .+.++-|.++++=-.| --|||++- ++ ..-+++-
T Consensus 137 ~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMas- 215 (265)
T COG4822 137 DEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMAS- 215 (265)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcc-
Confidence 3446789991 1245556666532222 12566552 22 1224443
Q ss_pred ccchhHHHHhhhhh
Q 019058 215 ASGDAWKLLLNTAE 228 (346)
Q Consensus 215 ~~~~~~k~l~n~ag 228 (346)
-+++.||.+++.+|
T Consensus 216 ddedswk~il~~~G 229 (265)
T COG4822 216 DDEDSWKNILEKNG 229 (265)
T ss_pred cchHHHHHHHHhCC
Confidence 26789999999888
No 63
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=43.32 E-value=43 Score=33.53 Aligned_cols=65 Identities=20% Similarity=0.175 Sum_probs=44.9
Q ss_pred CcEEEEeecccccc-ccchhhHHHHHHHHHhCCc--EEEEecCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 019058 91 PRAIIKFLGGAFIG-AVPEVTYSYLKELLAKEGF--LVISVPYNVTFDHANAANQVYERFNSCLDYVLSTG 158 (346)
Q Consensus 91 P~gVIhFiGGAfvG-a~PqitYr~LLE~La~~Gy--~ViAtPy~~tFDH~~iA~ev~~~F~~~~~~L~~~g 158 (346)
.+.=||||=|-.=| +-=-+|++..||.|++.|. .|+.|||.+.=.+-.- +.++++.-++.|++-|
T Consensus 233 ~I~~~~wLD~Gh~g~~~~w~T~~~~L~~l~~~~i~i~vH~TPyQv~D~~Rpw---I~~E~~~F~~~L~~~~ 300 (303)
T PF10561_consen 233 RISDMYWLDGGHNGGSNTWITDENVLKELAKLGIRIHVHVTPYQVSDPMRPW---IGKEEKKFVKLLKKLG 300 (303)
T ss_pred hhheEEEeccCCCCCCCceecCHHHHHHHHhcCcEEEEecCcccccCCCCcH---HHHHHHHHHHHHHHhC
Confidence 46668888877774 4556899999999999986 5889999997655332 2333444444554433
No 64
>PLN02578 hydrolase
Probab=43.18 E-value=97 Score=30.08 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=25.5
Q ss_pred CCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC
Q 019058 89 KKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 89 ~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
+.|.=+||=.|+. .-.|+++++.|++ +|.|++.=+.
T Consensus 86 g~~vvliHG~~~~------~~~w~~~~~~l~~-~~~v~~~D~~ 121 (354)
T PLN02578 86 GLPIVLIHGFGAS------AFHWRYNIPELAK-KYKVYALDLL 121 (354)
T ss_pred CCeEEEECCCCCC------HHHHHHHHHHHhc-CCEEEEECCC
Confidence 4577777744442 3667888999975 5999998554
No 65
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=42.89 E-value=70 Score=30.84 Aligned_cols=71 Identities=17% Similarity=0.329 Sum_probs=47.0
Q ss_pred CCccceEec---cEEEeCCCCCCCCcEEEEeeccccc--cccchhhHHHHHHHHHhCCcEEEEecCCCCCCh-HHHHHHH
Q 019058 70 NNKIYQRLG---SCLIIPPLNGKKPRAIIKFLGGAFI--GAVPEVTYSYLKELLAKEGFLVISVPYNVTFDH-ANAANQV 143 (346)
Q Consensus 70 ~~~~w~r~~---~~~vl~PP~~~~P~gVIhFiGGAfv--Ga~PqitYr~LLE~La~~Gy~ViAtPy~~tFDH-~~iA~ev 143 (346)
++..|+|+- .|.-++| ..+|.|-.-.+---+- --+-+..-.+||+.++.+|.+||--.- +++| +.-|+++
T Consensus 127 SGGEWQRVRLAav~LQv~P--d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~H--DLNhTLrhA~~~ 202 (248)
T COG4138 127 SGGEWQRVRLAAVVLQITP--DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSH--DLNHTLRHAHRA 202 (248)
T ss_pred CcccceeeEEeEEEEEecC--CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEecc--chhhHHHHHHHH
Confidence 578999874 4566666 2456665555544332 336688899999999999999887643 3444 2346666
Q ss_pred H
Q 019058 144 Y 144 (346)
Q Consensus 144 ~ 144 (346)
|
T Consensus 203 w 203 (248)
T COG4138 203 W 203 (248)
T ss_pred H
Confidence 5
No 66
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=38.28 E-value=99 Score=26.09 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=18.3
Q ss_pred cccchhhHHHHHHHHHhCCcEEEEecC
Q 019058 104 GAVPEVTYSYLKELLAKEGFLVISVPY 130 (346)
Q Consensus 104 Ga~PqitYr~LLE~La~~Gy~ViAtPy 130 (346)
|... -.|+.+.+.|++ +|.||+.=+
T Consensus 14 ~~~~-~~~~~~~~~l~~-~~~vi~~d~ 38 (245)
T TIGR01738 14 GMNA-EVFRCLDEELSA-HFTLHLVDL 38 (245)
T ss_pred CCch-hhHHHHHHhhcc-CeEEEEecC
Confidence 4443 368899999975 699998754
No 67
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=37.23 E-value=84 Score=29.74 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=24.0
Q ss_pred ceeeEEecCCCCCCcHHHHHHhchhccccCCceeEEeec-CCCcccCc
Q 019058 282 HTLLVKFSFDTIDQTDLLEETLKPRMESIGGTVEKVQLN-GNHITPCI 328 (346)
Q Consensus 282 rnLLIkF~dD~IDqT~~L~~~L~~r~~s~~~~v~~~~Lp-GnHLTPl~ 328 (346)
.+|+|.-++|.+--.+. .+. +...+++..++ |+|.-.+.
T Consensus 316 Pvlii~g~~D~~vp~~~-~~~-------l~~~~~~~~~~~~gH~~~~e 355 (371)
T PRK14875 316 PVLVIWGEQDRIIPAAH-AQG-------LPDGVAVHVLPGAGHMPQME 355 (371)
T ss_pred CEEEEEECCCCccCHHH-Hhh-------ccCCCeEEEeCCCCCChhhh
Confidence 38888888887543222 111 22356778889 89975543
No 68
>KOG2800 consensus Conserved developmentally regulated protein [General function prediction only]
Probab=36.73 E-value=64 Score=33.06 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=47.2
Q ss_pred cEEEEeecccccc-ccchhhHHHHHHHHHhCCc--EEEEecCCCCCChHHHHHHHHHHHHHHHHHH
Q 019058 92 RAIIKFLGGAFIG-AVPEVTYSYLKELLAKEGF--LVISVPYNVTFDHANAANQVYERFNSCLDYV 154 (346)
Q Consensus 92 ~gVIhFiGGAfvG-a~PqitYr~LLE~La~~Gy--~ViAtPy~~tFDH~~iA~ev~~~F~~~~~~L 154 (346)
+.-+|+|-|--=| +--=|||+.+||++++.|. .|+-|||.+-=+--.--+.=.++|-+.+++|
T Consensus 294 Is~mywlDgGh~g~sntwIT~~~vlq~~sq~gl~IhiH~TPyQv~D~~R~WIrKE~k~fv~lL~~l 359 (389)
T KOG2800|consen 294 ISEMYWLDGGHNGQSNTWITDHNVLQRISQDGLRIHIHGTPYQVCDELRGWIRKEKKEFVRLLKAL 359 (389)
T ss_pred hhheeEeecccCCCCCceeccHHHHHHHhhcceEEEEecCcchhcchhhhhhhHhHHHHHHHHHHh
Confidence 3457788666555 6778999999999999997 4678999997666555566667777666555
No 69
>PLN02872 triacylglycerol lipase
Probab=36.31 E-value=78 Score=32.24 Aligned_cols=19 Identities=32% Similarity=0.218 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCcEEEEecC
Q 019058 112 SYLKELLAKEGFLVISVPY 130 (346)
Q Consensus 112 r~LLE~La~~Gy~ViAtPy 130 (346)
+.|-..|+++||.|++.=.
T Consensus 97 ~sla~~La~~GydV~l~n~ 115 (395)
T PLN02872 97 QSLGFILADHGFDVWVGNV 115 (395)
T ss_pred cchHHHHHhCCCCcccccc
Confidence 4466679999999987644
No 70
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.93 E-value=3.7e+02 Score=25.25 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=61.3
Q ss_pred eEeccEEEeCCCCCCCC-cEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC----CCCC------hHHHH---
Q 019058 75 QRLGSCLIIPPLNGKKP-RAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN----VTFD------HANAA--- 140 (346)
Q Consensus 75 ~r~~~~~vl~PP~~~~P-~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~----~tFD------H~~iA--- 140 (346)
.++..-+..|...+..| .=|||=|.|- .| .++.+-++||++||+|++-=+- ..++ +....
T Consensus 12 ~~~~~~~a~P~~~~~~P~VIv~hei~Gl----~~--~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
T COG0412 12 GELPAYLARPAGAGGFPGVIVLHEIFGL----NP--HIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVE 85 (236)
T ss_pred ceEeEEEecCCcCCCCCEEEEEecccCC----ch--HHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhc
Confidence 55666565544333323 3345656554 34 7899999999999999875111 1111 22221
Q ss_pred ----HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCCcCccchhhhhchhhhhcc
Q 019058 141 ----NQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQMM 200 (346)
Q Consensus 141 ----~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~L~ 200 (346)
.+++..-+.+++.|..... ...--+..+|=+ +|-++..++
T Consensus 86 ~~~~~~~~~d~~a~~~~L~~~~~---------~~~~~ig~~GfC-----------~GG~~a~~~ 129 (236)
T COG0412 86 RVDPAEVLADIDAALDYLARQPQ---------VDPKRIGVVGFC-----------MGGGLALLA 129 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCC---------CCCceEEEEEEc-----------ccHHHHHHh
Confidence 4667777778888876421 223457888989 888887655
No 71
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=35.77 E-value=3.6e+02 Score=24.92 Aligned_cols=75 Identities=8% Similarity=0.077 Sum_probs=41.7
Q ss_pred cccCChHHHHHHHHhccCccceeeEEecCCCCCC--cHHHHHHhchhccccCCceeEEe---ecCCCcccCcccccchhh
Q 019058 262 EFKPTPSENLDCFKKSYNVQHTLLVKFSFDTIDQ--TDLLEETLKPRMESIGGTVEKVQ---LNGNHITPCIQVIHANSI 336 (346)
Q Consensus 262 EF~PsPeET~~LI~~sY~v~rnLLIkF~dD~IDq--T~~L~~~L~~r~~s~~~~v~~~~---LpGnHLTPl~qd~~~~~~ 336 (346)
.|.+|++++.++++.--.=+--+++-+..-.+.. .....+.|.+|+.. +-+.+ -.+.|+-|=..+++|..+
T Consensus 156 ~~~~t~~~~~~l~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~rI~~----vHi~D~~~~~~~~~~pG~G~id~~~i 231 (275)
T PRK09856 156 NVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRH----LHIVDSDGASDTHYIPGEGKMPLREL 231 (275)
T ss_pred cccCCHHHHHHHHHHcCCCcceeEEeecchhcCCCCHHHHHHHhCCcEEE----EEEEcCCCCCCCCcCCCCCCCCHHHH
Confidence 4578999999999864321112233333322222 22234445555322 11111 124588887789999999
Q ss_pred hhhh
Q 019058 337 FWAM 340 (346)
Q Consensus 337 ~~~~ 340 (346)
+-++
T Consensus 232 ~~~L 235 (275)
T PRK09856 232 MRDI 235 (275)
T ss_pred HHHH
Confidence 9876
No 72
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=35.34 E-value=3.8e+02 Score=26.93 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=22.1
Q ss_pred EEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCC
Q 019058 93 AIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 93 gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~ 131 (346)
..|=||-|. |.. .-.|...++.|++ +|.|++.-+.
T Consensus 106 p~vvllHG~--~~~-~~~~~~~~~~L~~-~~~vi~~D~r 140 (402)
T PLN02894 106 PTLVMVHGY--GAS-QGFFFRNFDALAS-RFRVIAIDQL 140 (402)
T ss_pred CEEEEECCC--Ccc-hhHHHHHHHHHHh-CCEEEEECCC
Confidence 345566663 332 2345566788876 5999998665
No 73
>COG1647 Esterase/lipase [General function prediction only]
Probab=35.23 E-value=3.8e+02 Score=26.34 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=50.2
Q ss_pred cccccchhhHHHHHHHHHhCCcEEEEecCCCCCChHH------HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCee
Q 019058 102 FIGAVPEVTYSYLKELLAKEGFLVISVPYNVTFDHAN------AANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIY 175 (346)
Q Consensus 102 fvGa~PqitYr~LLE~La~~Gy~ViAtPy~~tFDH~~------iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~ 175 (346)
|-|+.=.+ |.|=+.|.++||+|.|==|. |-+|.. -.+.=|++=..+++.|.+.|. --|+
T Consensus 24 FTGt~~Dv--r~Lgr~L~e~GyTv~aP~yp-GHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy------------~eI~ 88 (243)
T COG1647 24 FTGTPRDV--RMLGRYLNENGYTVYAPRYP-GHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGY------------DEIA 88 (243)
T ss_pred cCCCcHHH--HHHHHHHHHCCceEecCCCC-CCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCC------------CeEE
Confidence 66776665 67889999999999986665 222221 234445666678888887544 2568
Q ss_pred EecCCCCcCccchhhhhchhhhhcc
Q 019058 176 SVGHRPATEAVPYFEQLGPLVNQMM 200 (346)
Q Consensus 176 gVGHS~a~~AvP~f~~LGckL~~L~ 200 (346)
.+|=| ||..+.+.+
T Consensus 89 v~GlS-----------mGGv~alkl 102 (243)
T COG1647 89 VVGLS-----------MGGVFALKL 102 (243)
T ss_pred EEeec-----------chhHHHHHH
Confidence 89999 888877644
No 74
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=33.73 E-value=1.3e+02 Score=23.42 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHHHhCCc-EEEEecCCCCCChHHHHHHHHHHHHHHHHH
Q 019058 106 VPEVTYSYLKELLAKEGF-LVISVPYNVTFDHANAANQVYERFNSCLDY 153 (346)
Q Consensus 106 ~PqitYr~LLE~La~~Gy-~ViAtPy~~tFDH~~iA~ev~~~F~~~~~~ 153 (346)
.|.+ ...|+.|.++|+ .|+..|+-+. ++.....++.+.++..+..
T Consensus 44 ~P~i--~~~l~~l~~~g~~~vvvvPl~~~-~g~h~~~di~~~~~~~~~~ 89 (101)
T cd03409 44 GPDT--EEAIRELAEEGYQRVVIVPLAPV-SGDEVFYDIDSEIGLVRKQ 89 (101)
T ss_pred CCCH--HHHHHHHHHcCCCeEEEEeCccc-cChhhHHHHHHHHHHHHHh
Confidence 6654 478999999998 6999999988 8877777777776655543
No 75
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=32.86 E-value=1e+02 Score=26.79 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCc-EEEEecCCCCCChHHHHHHHHHHHHH
Q 019058 112 SYLKELLAKEGF-LVISVPYNVTFDHANAANQVYERFNS 149 (346)
Q Consensus 112 r~LLE~La~~Gy-~ViAtPy~~tFDH~~iA~ev~~~F~~ 149 (346)
..-|+.|+++|+ .|+..|+.+..||..+=.++-.+++.
T Consensus 80 ~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~ 118 (135)
T cd00419 80 DDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRE 118 (135)
T ss_pred HHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHH
Confidence 457888999998 69999999999999888877666554
No 76
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=32.47 E-value=2.8e+02 Score=22.73 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=51.1
Q ss_pred EeeccccccccchhhHHHHHHHHHhCCcEEEEecCCCCCChHHHHHHHHHHHH----------------HHHHHHHhcCC
Q 019058 96 KFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNVTFDHANAANQVYERFN----------------SCLDYVLSTGL 159 (346)
Q Consensus 96 hFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~tFDH~~iA~ev~~~F~----------------~~~~~L~~~g~ 159 (346)
-|||+.--....+.-+..+.+.+.+.|.......+...-++..........++ ..++.|.+.|.
T Consensus 13 ~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~~~~~~a~~~~~~l~~~g~ 92 (160)
T PF13377_consen 13 AFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIICSNDRLALGVLRALRELGI 92 (160)
T ss_dssp EEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEESSHHHHHHHHHHHHHTTS
T ss_pred EEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEEcCHHHHHHHHHHHHHcCC
Confidence 35565555566777788899999999998777777666665544433322111 25566666544
Q ss_pred CCCCCCCCCCCCCCeeEecCC
Q 019058 160 PDANLTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 160 ~~~gl~~~~~~~lPv~gVGHS 180 (346)
. -.+++.+.+++++
T Consensus 93 -----~--vP~di~vv~~~~~ 106 (160)
T PF13377_consen 93 -----R--VPQDISVVSFDDS 106 (160)
T ss_dssp -----C--TTTTSEEEEESSS
T ss_pred -----c--ccccccEEEecCc
Confidence 2 2567899999997
No 77
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=32.29 E-value=4.2e+02 Score=26.06 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=38.6
Q ss_pred cceEecc--EEEeCC-CCCCCCcEEEEeeccccccc-cchhhHHHHHHHHHhCCcEEEEe
Q 019058 73 IYQRLGS--CLIIPP-LNGKKPRAIIKFLGGAFIGA-VPEVTYSYLKELLAKEGFLVISV 128 (346)
Q Consensus 73 ~w~r~~~--~~vl~P-P~~~~P~gVIhFiGGAfvGa-~PqitYr~LLE~La~~Gy~ViAt 128 (346)
.|-..++ ...|+. -.+++++|+|=.|.|..--+ .|. .=..|=..|.+.|++.++.
T Consensus 65 ~~L~~~~~~flaL~~~~~~~~~~G~vIilp~~g~~~d~p~-~i~~LR~~L~~~GW~Tlsi 123 (310)
T PF12048_consen 65 QWLQAGEERFLALWRPANSAKPQGAVIILPDWGEHPDWPG-LIAPLRRELPDHGWATLSI 123 (310)
T ss_pred EEeecCCEEEEEEEecccCCCCceEEEEecCCCCCCCcHh-HHHHHHHHhhhcCceEEEe
Confidence 3444444 334444 55889999999999987655 344 3467788899999988775
No 78
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.94 E-value=44 Score=37.96 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=41.6
Q ss_pred cEEEeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHH-hCCcEEEEecCCCCCChHHHHHHH
Q 019058 79 SCLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLA-KEGFLVISVPYNVTFDHANAANQV 143 (346)
Q Consensus 79 ~~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La-~~Gy~ViAtPy~~tFDH~~iA~ev 143 (346)
-+.++||| ++.|..| +|-|| +.|+--.|=+-. -+||-|. |.+|+||..||-++
T Consensus 35 f~I~~PPP---NVTG~LH-mGHAl-----~~tl~D~l~RykRM~G~~vl---~~pG~DhAGIaTq~ 88 (877)
T COG0525 35 FSIDTPPP---NVTGSLH-MGHAL-----NYTLQDILARYKRMRGYNVL---WPPGTDHAGIATQV 88 (877)
T ss_pred cEEeCCCC---CCCCccc-chhhh-----hHHHHHHHHHHHHcCCCeee---cCCCCCCCCchHHH
Confidence 68899997 7889888 45555 677777777765 4599987 77899999999775
No 79
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=31.93 E-value=1.4e+02 Score=30.05 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=44.8
Q ss_pred CcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCC---CCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 019058 91 PRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNV---TFDHANAANQVYERFNSCLDYVLSTGLPDANLTPD 167 (346)
Q Consensus 91 P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~---tFDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~ 167 (346)
.+-+|=||||--=|=.--=....|-+.|.+.||.|+-.=... +|-...+.+.+. +...|++.|+.... |
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~~D~~-eI~~~v~ylr~~~~---g---- 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLDRDVE-EIAQLVEYLRSEKG---G---- 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HHHHHH-HHHHHHHHHHHHS---------
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhhhHHH-HHHHHHHHHHHhhc---c----
Confidence 455677999976433222245667788877899988774433 666777777763 44679999987610 0
Q ss_pred CCCCCCeeEecCCCC
Q 019058 168 DLVNLPIYSVGHRPA 182 (346)
Q Consensus 168 ~~~~lPv~gVGHS~a 182 (346)
....--|+-+|||-|
T Consensus 104 ~~~~~kIVLmGHSTG 118 (303)
T PF08538_consen 104 HFGREKIVLMGHSTG 118 (303)
T ss_dssp ----S-EEEEEECCH
T ss_pred ccCCccEEEEecCCC
Confidence 112247899999943
No 80
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=31.63 E-value=2.6e+02 Score=23.50 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=47.6
Q ss_pred EeccEEEeCCCCCCCCcEEEEeeccccccccchhhHHHH-------HHHHHhCCcEEEEecCCC----CCChHHHHHHHH
Q 019058 76 RLGSCLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYL-------KELLAKEGFLVISVPYNV----TFDHANAANQVY 144 (346)
Q Consensus 76 r~~~~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~L-------LE~La~~Gy~ViAtPy~~----tFDH~~iA~ev~ 144 (346)
.++++.++++......+-|||+++=-+-+ ++.+|..| ++...+++..-||.|-.- ++|...+++-+.
T Consensus 57 ~~G~~~~~~~~~~~~~~~I~~~~t~~~~~--~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~ 134 (140)
T cd02901 57 LLGGVAVLERGSSLVSRYIYNLPTKVHYG--PKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIE 134 (140)
T ss_pred CCCcEEEEecCCCCCceEEEEeeccCCCC--CCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHH
Confidence 36778888764444468999999766666 45566554 444445789999999653 578777766655
Q ss_pred HHH
Q 019058 145 ERF 147 (346)
Q Consensus 145 ~~F 147 (346)
+.+
T Consensus 135 ~~~ 137 (140)
T cd02901 135 KAL 137 (140)
T ss_pred HHh
Confidence 544
No 81
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=31.50 E-value=21 Score=29.61 Aligned_cols=30 Identities=23% Similarity=0.549 Sum_probs=23.1
Q ss_pred ccccCChHHHHHHHHhccCccceeeEEecC
Q 019058 261 SEFKPTPSENLDCFKKSYNVQHTLLVKFSF 290 (346)
Q Consensus 261 ~EF~PsPeET~~LI~~sY~v~rnLLIkF~d 290 (346)
.-|.|+|.|+-.-+-+.|.+.-.|+|.+..
T Consensus 53 ~sFaPspDe~vg~L~~~f~~~~~Liv~Ys~ 82 (87)
T PF04110_consen 53 NSFAPSPDETVGDLYRCFGTNGELIVSYSK 82 (87)
T ss_dssp EEE---TTSBHHHHHHHH-BTTBEEEEEES
T ss_pred CccCCCchhHHHHHHHHhCCCCEEEEEEec
Confidence 459999999999999999999999998754
No 82
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=30.71 E-value=37 Score=34.32 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHhCCcEEEEe
Q 019058 108 EVTYSYLKELLAKEGFLVISV 128 (346)
Q Consensus 108 qitYr~LLE~La~~Gy~ViAt 128 (346)
.-+|..+++.||-+||+|+|.
T Consensus 113 R~~yS~~~~eLAS~GyVV~ai 133 (379)
T PF03403_consen 113 RTSYSAICGELASHGYVVAAI 133 (379)
T ss_dssp TTTTHHHHHHHHHTT-EEEEE
T ss_pred hhhHHHHHHHHHhCCeEEEEe
Confidence 456999999999999999997
No 83
>PRK05855 short chain dehydrogenase; Validated
Probab=30.51 E-value=2.3e+02 Score=28.51 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=24.2
Q ss_pred EEEeeccccccccchhhHHHHHHHHHhCCcEEEEecC
Q 019058 94 IIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPY 130 (346)
Q Consensus 94 VIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy 130 (346)
.|=|+-|..-. .-.|+.+++.| .+||.||+.=+
T Consensus 27 ~ivllHG~~~~---~~~w~~~~~~L-~~~~~Vi~~D~ 59 (582)
T PRK05855 27 TVVLVHGYPDN---HEVWDGVAPLL-ADRFRVVAYDV 59 (582)
T ss_pred eEEEEcCCCch---HHHHHHHHHHh-hcceEEEEecC
Confidence 56677776432 35689999999 67899999844
No 84
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=29.78 E-value=2.7e+02 Score=26.58 Aligned_cols=85 Identities=22% Similarity=0.225 Sum_probs=43.8
Q ss_pred CcEEEEeeccccccccchhhHHHHHHHHH-hCCcEEEEecCCCC-CChHHHH----HHHHHHHHHHHHHHHhcCCCCCCC
Q 019058 91 PRAIIKFLGGAFIGAVPEVTYSYLKELLA-KEGFLVISVPYNVT-FDHANAA----NQVYERFNSCLDYVLSTGLPDANL 164 (346)
Q Consensus 91 P~gVIhFiGGAfvGa~PqitYr~LLE~La-~~Gy~ViAtPy~~t-FDH~~iA----~ev~~~F~~~~~~L~~~g~~~~gl 164 (346)
++=+||=.+| ..=...+..+.+.|. +++|.||+.=|... ..+...| +.+-+.....++.|.+.. |
T Consensus 38 ~vilIHG~~~----~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~----g- 108 (275)
T cd00707 38 TRFIIHGWTS----SGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNT----G- 108 (275)
T ss_pred cEEEEcCCCC----CCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHHHHhc----C-
Confidence 3555553333 221345666666554 46899998865432 1111111 222233344555554431 1
Q ss_pred CCCCCCCCCeeEecCCCCcCccchhhhhchhhhhc
Q 019058 165 TPDDLVNLPIYSVGHRPATEAVPYFEQLGPLVNQM 199 (346)
Q Consensus 165 ~~~~~~~lPv~gVGHS~a~~AvP~f~~LGckL~~L 199 (346)
...-+++.|||| ||.-+...
T Consensus 109 ----~~~~~i~lIGhS-----------lGa~vAg~ 128 (275)
T cd00707 109 ----LSLENVHLIGHS-----------LGAHVAGF 128 (275)
T ss_pred ----CChHHEEEEEec-----------HHHHHHHH
Confidence 111368999999 88766643
No 85
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=28.93 E-value=1e+02 Score=25.21 Aligned_cols=57 Identities=25% Similarity=0.395 Sum_probs=41.2
Q ss_pred eeccccccccchhhHHHHHHHHHhCCcEEEEecCCCCCC----hHHHHHHHHHHHHHHHHHHHhc
Q 019058 97 FLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNVTFD----HANAANQVYERFNSCLDYVLST 157 (346)
Q Consensus 97 FiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~tFD----H~~iA~ev~~~F~~~~~~L~~~ 157 (346)
+|+|.||...-+-.+.++.+.|.+.|+.|. .|.....+ ....++++ |++.++.+.+.
T Consensus 2 YlAgp~F~~~~~~~~~~~~~~L~~~g~~v~-~P~~~~~~~~~~~~~~~~~i---~~~d~~~i~~~ 62 (113)
T PF05014_consen 2 YLAGPFFSEEQKARVERLREALEKNGFEVY-SPQDNDENDEEDSQEWAREI---FERDLEGIREC 62 (113)
T ss_dssp EEESGGSSHHHHHHHHHHHHHHHTTTTEEE-GGCTCSSS--TTSHHCHHHH---HHHHHHHHHHS
T ss_pred EEeCCcCCHHHHHHHHHHHHHHHhCCCEEE-eccccccccccccchHHHHH---HHHHHHHHHHC
Confidence 578888877888889999999999999554 78855443 44455444 56677777765
No 86
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=28.50 E-value=2.6e+02 Score=23.33 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=42.5
Q ss_pred EeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHH-HhCCcEEEEecCCCCCChHHHHHHHHH
Q 019058 82 IIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELL-AKEGFLVISVPYNVTFDHANAANQVYE 145 (346)
Q Consensus 82 vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~L-a~~Gy~ViAtPy~~tFDH~~iA~ev~~ 145 (346)
|+.-+...+|++||++=|..-- ..-+..=..+.+.+ .+.|..++=++-...-+-..+.+.+.+
T Consensus 61 vv~d~~~~~p~~vIEld~~~h~-~~~~~~rD~~k~~~l~~agiplir~~~~~~~~~~~l~~~l~~ 124 (126)
T PF10881_consen 61 VVCDKRDGRPVAVIELDGSSHD-QEKRQERDEFKDRVLKKAGIPLIRISPKDSYSVEELRRDLRE 124 (126)
T ss_pred EEEECCCCcEEEEEEecCcccc-chhhHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 3334566789999999988433 22233334556666 566999999888877777777666543
No 87
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=28.47 E-value=1.1e+02 Score=27.44 Aligned_cols=42 Identities=12% Similarity=-0.122 Sum_probs=24.2
Q ss_pred eeeEEecCCCCCCcHHHHHHhchhccccCCceeEEeec-CCCcccCcc
Q 019058 283 TLLVKFSFDTIDQTDLLEETLKPRMESIGGTVEKVQLN-GNHITPCIQ 329 (346)
Q Consensus 283 nLLIkF~dD~IDqT~~L~~~L~~r~~s~~~~v~~~~Lp-GnHLTPl~q 329 (346)
+|+|.=++|.+--. ...+.+..+ ++ ..+...++ ++|.-+..+
T Consensus 226 vlli~G~~D~~v~~-~~~~~~~~~---~~-~~~~~~i~~agH~~~~e~ 268 (282)
T TIGR03343 226 TLVTWGRDDRFVPL-DHGLKLLWN---MP-DAQLHVFSRCGHWAQWEH 268 (282)
T ss_pred EEEEEccCCCcCCc-hhHHHHHHh---CC-CCEEEEeCCCCcCCcccC
Confidence 67777777775432 233333433 22 35567777 599976654
No 88
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=28.12 E-value=69 Score=32.32 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=32.2
Q ss_pred CCccceEeccEEEeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEe-----cCCCCCCh
Q 019058 70 NNKIYQRLGSCLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISV-----PYNVTFDH 136 (346)
Q Consensus 70 ~~~~w~r~~~~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAt-----Py~~tFDH 136 (346)
++++|||+ .|.| +|+.||+ ...++.|.++|.+|||. |-.-+=+|
T Consensus 155 ~~rG~RRV-----VpSP---~P~~IvE---------------~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~ 203 (312)
T COG0549 155 AGRGYRRV-----VPSP---KPVRIVE---------------AEAIKALLESGHVVIAAGGGGIPVVEEGAG 203 (312)
T ss_pred CCCCeeEe-----cCCC---CCccchh---------------HHHHHHHHhCCCEEEEeCCCCcceEecCCC
Confidence 46678884 4444 8999887 46789999999999985 55544444
No 89
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=28.03 E-value=1.1e+02 Score=31.98 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=45.3
Q ss_pred EeccEEEeCCCCCCCCcEEEEeeccccccccc-hhhHHHHHHHHHhCCcEEEEecCCCC------CChHHHHHHHHHHHH
Q 019058 76 RLGSCLIIPPLNGKKPRAIIKFLGGAFIGAVP-EVTYSYLKELLAKEGFLVISVPYNVT------FDHANAANQVYERFN 148 (346)
Q Consensus 76 r~~~~~vl~PP~~~~P~gVIhFiGGAfvGa~P-qitYr~LLE~La~~Gy~ViAtPy~~t------FDH~~iA~ev~~~F~ 148 (346)
++...+.+| .+..|..+|-++.|-.--... ...+....+.|+++||+||+.=+.-. +++.. . ...+...
T Consensus 8 ~L~~~~~~P--~~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~~-~-~~~~D~~ 83 (550)
T TIGR00976 8 RLAIDVYRP--AGGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLLG-S-DEAADGY 83 (550)
T ss_pred EEEEEEEec--CCCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEecC-c-ccchHHH
Confidence 454444443 233455555555543211110 01111234678999999999855532 11111 1 1223334
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCeeEecCC
Q 019058 149 SCLDYVLSTGLPDANLTPDDLVNLPIYSVGHR 180 (346)
Q Consensus 149 ~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS 180 (346)
.+++.+.++.. .+-++..+|||
T Consensus 84 ~~i~~l~~q~~----------~~~~v~~~G~S 105 (550)
T TIGR00976 84 DLVDWIAKQPW----------CDGNVGMLGVS 105 (550)
T ss_pred HHHHHHHhCCC----------CCCcEEEEEeC
Confidence 56666655311 12488999999
No 90
>PRK03592 haloalkane dehalogenase; Provisional
Probab=26.22 E-value=1.8e+02 Score=26.74 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhCCcEEEEecCC
Q 019058 109 VTYSYLKELLAKEGFLVISVPYN 131 (346)
Q Consensus 109 itYr~LLE~La~~Gy~ViAtPy~ 131 (346)
-.|+.+.+.|++++ .|||.-..
T Consensus 41 ~~w~~~~~~L~~~~-~via~D~~ 62 (295)
T PRK03592 41 YLWRNIIPHLAGLG-RCLAPDLI 62 (295)
T ss_pred HHHHHHHHHHhhCC-EEEEEcCC
Confidence 47889999999987 89987543
No 91
>PRK00035 hemH ferrochelatase; Reviewed
Probab=26.17 E-value=96 Score=30.34 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhCCc-EEEEecCCCCCChHHHHHHHHHH
Q 019058 110 TYSYLKELLAKEGF-LVISVPYNVTFDHANAANQVYER 146 (346)
Q Consensus 110 tYr~LLE~La~~Gy-~ViAtPy~~tFDH~~iA~ev~~~ 146 (346)
+-...|+.|+++|+ .|+..||-+.-||...-.++-.+
T Consensus 249 ~~~~~l~~l~~~g~k~V~v~P~~Fv~D~lEtl~ei~~e 286 (333)
T PRK00035 249 YTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEIDIE 286 (333)
T ss_pred CHHHHHHHHHHcCCCeEEEECCeeeccchhHHHHHHHH
Confidence 34678999999998 78889999988997655555333
No 92
>PRK11071 esterase YqiA; Provisional
Probab=26.06 E-value=1.8e+02 Score=26.03 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=36.4
Q ss_pred ccccchhhHHHHH-HHHHhC--CcEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecC
Q 019058 103 IGAVPEVTYSYLK-ELLAKE--GFLVISVPYNVTFDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGH 179 (346)
Q Consensus 103 vGa~PqitYr~LL-E~La~~--Gy~ViAtPy~~tFDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGH 179 (346)
+++.++-.+...+ +.|++. +|.|++.=.. + |- .+ ....+.++.+. .+ .-+++.+||
T Consensus 10 f~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~-g--~~---~~----~~~~l~~l~~~----~~-------~~~~~lvG~ 68 (190)
T PRK11071 10 FNSSPRSAKATLLKNWLAQHHPDIEMIVPQLP-P--YP---AD----AAELLESLVLE----HG-------GDPLGLVGS 68 (190)
T ss_pred CCCCcchHHHHHHHHHHHHhCCCCeEEeCCCC-C--CH---HH----HHHHHHHHHHH----cC-------CCCeEEEEE
Confidence 4667887775444 455543 7888765332 2 21 11 22233333332 11 127899999
Q ss_pred CCCcCccchhhhhchhhhhcc
Q 019058 180 RPATEAVPYFEQLGPLVNQMM 200 (346)
Q Consensus 180 S~a~~AvP~f~~LGckL~~L~ 200 (346)
| ||..+.+.+
T Consensus 69 S-----------~Gg~~a~~~ 78 (190)
T PRK11071 69 S-----------LGGYYATWL 78 (190)
T ss_pred C-----------HHHHHHHHH
Confidence 9 888777543
No 93
>PRK09411 carbamate kinase; Reviewed
Probab=25.12 E-value=99 Score=30.92 Aligned_cols=42 Identities=36% Similarity=0.484 Sum_probs=31.1
Q ss_pred CccceEeccEEEeCCCCCCCCcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEe-----cCCCCCC
Q 019058 71 NKIYQRLGSCLIIPPLNGKKPRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISV-----PYNVTFD 135 (346)
Q Consensus 71 ~~~w~r~~~~~vl~PP~~~~P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAt-----Py~~tFD 135 (346)
++.|+|+ .|.| +|+.+|+ ...|+.|.++|+.||+. |-..+.|
T Consensus 148 g~g~rrV-----VpSP---~P~~iVe---------------~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~ 194 (297)
T PRK09411 148 GKYLRRV-----VASP---QPRKILD---------------SEAIELLLKEGHVVICSGGGGVPVTEDGA 194 (297)
T ss_pred CCceEEE-----ccCC---CCcceEC---------------HHHHHHHHHCCCEEEecCCCCCCeEEcCC
Confidence 4455553 4444 8999886 57899999999999997 7665554
No 94
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=24.89 E-value=1.2e+02 Score=30.64 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCcEEEEec-------CCCCCChHHHHHHHHHHHHHHHHHHHhc
Q 019058 111 YSYLKELLAKEGFLVISVP-------YNVTFDHANAANQVYERFNSCLDYVLST 157 (346)
Q Consensus 111 Yr~LLE~La~~Gy~ViAtP-------y~~tFDH~~iA~ev~~~F~~~~~~L~~~ 157 (346)
=..|++.|.++|.++|||. |..++.| +.|.-+.+.|.+.
T Consensus 147 l~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r--------~~Flp~I~~l~~~ 192 (362)
T PF03969_consen 147 LKRLFEALFKRGVVLVATSNRPPEDLYKNGLQR--------ERFLPFIDLLKRR 192 (362)
T ss_pred HHHHHHHHHHCCCEEEecCCCChHHHcCCcccH--------HHHHHHHHHHHhc
Confidence 4689999999999999995 7788887 4566666666554
No 95
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=22.74 E-value=2.6e+02 Score=25.77 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=27.5
Q ss_pred cceeeEEecCCCCCCcHHHHHHhchhccccCCceeEEeec-CCCcccCcc
Q 019058 281 QHTLLVKFSFDTIDQTDLLEETLKPRMESIGGTVEKVQLN-GNHITPCIQ 329 (346)
Q Consensus 281 ~rnLLIkF~dD~IDqT~~L~~~L~~r~~s~~~~v~~~~Lp-GnHLTPl~q 329 (346)
--+|+|.=++|.+-..+. .+.+..+ ++ ..++..++ ++|+-++.+
T Consensus 235 ~P~lvi~G~~D~~~~~~~-~~~~~~~---~~-~~~~~~i~~~gH~~~~e~ 279 (294)
T PLN02824 235 CPVLIAWGEKDPWEPVEL-GRAYANF---DA-VEDFIVLPGVGHCPQDEA 279 (294)
T ss_pred CCeEEEEecCCCCCChHH-HHHHHhc---CC-ccceEEeCCCCCChhhhC
Confidence 367888888888755443 3335554 22 34567886 699876643
No 96
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=22.36 E-value=2e+02 Score=24.42 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=39.6
Q ss_pred CcEEEEeeccccccccchhhHHHHHHHHHhCCcEEEEecCCCCCChHHHHH
Q 019058 91 PRAIIKFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYNVTFDHANAAN 141 (346)
Q Consensus 91 P~gVIhFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~~tFDH~~iA~ 141 (346)
=.-+|+=.||.+++..-+.++-.+...| +.-..+|++|..-+.+|.....
T Consensus 40 d~vliEGaGg~~~p~~~~~~~~d~~~~~-~~~vllV~~~~~g~i~~a~~~~ 89 (134)
T cd03109 40 DFVLVEGAGGLCVPLKEDFTNADVAKEL-NLPAILVTSAGLGSINHAFLTI 89 (134)
T ss_pred CEEEEECCCccccCCCCCCCHHHHHHHh-CCCEEEEEcCCCCcHhHHHHHH
Confidence 3567888899999999999988888777 4456888888888888864443
No 97
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=22.30 E-value=2.2e+02 Score=23.21 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=40.8
Q ss_pred EeccEEEeCCCCCCCCcEEEEeeccccccc---cc---hhhHHHHHHHHHhCCcEEEEecCCC----CCChHHHHH
Q 019058 76 RLGSCLIIPPLNGKKPRAIIKFLGGAFIGA---VP---EVTYSYLKELLAKEGFLVISVPYNV----TFDHANAAN 141 (346)
Q Consensus 76 r~~~~~vl~PP~~~~P~gVIhFiGGAfvGa---~P---qitYr~LLE~La~~Gy~ViAtPy~~----tFDH~~iA~ 141 (346)
+.+++.+.+ ....+++-|||.++=-+-+. .. .-+|+.+|+...+.+..-||.|=.- ++|....|+
T Consensus 57 ~~G~~~~~~-~~~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~ 131 (133)
T smart00506 57 PVGTAVVTE-GGNLPAKYVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQ 131 (133)
T ss_pred CCccEEEec-CCCCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHh
Confidence 344555554 33445789999987544432 11 4467777777778899999999532 455555443
No 98
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=22.07 E-value=4.7e+02 Score=26.95 Aligned_cols=93 Identities=25% Similarity=0.363 Sum_probs=60.2
Q ss_pred CccceEecc--------EEEeCCCCCCCCcEEE-EeeccccccccchhhHHHHHHHHHhCCcEEEEecCC---------C
Q 019058 71 NKIYQRLGS--------CLIIPPLNGKKPRAII-KFLGGAFIGAVPEVTYSYLKELLAKEGFLVISVPYN---------V 132 (346)
Q Consensus 71 ~~~w~r~~~--------~~vl~PP~~~~P~gVI-hFiGGAfvGa~PqitYr~LLE~La~~Gy~ViAtPy~---------~ 132 (346)
.+.||++.- +|+-.|-+..+|.-|+ |=|=|.. -.| .=|.|.+.|.++||.||..=+. +
T Consensus 48 ~~~re~v~~pdg~~~~ldw~~~p~~~~~P~vVl~HGL~G~s--~s~--y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p 123 (345)
T COG0429 48 AYTRERLETPDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSS--NSP--YARGLMRALSRRGWLVVVFHFRGCSGEANTSP 123 (345)
T ss_pred ccceEEEEcCCCCEEEEeeccCccccCCceEEEEeccCCCC--cCH--HHHHHHHHHHhcCCeEEEEecccccCCcccCc
Confidence 566777654 6777664455564433 4333332 234 6688999999999999986443 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeeEecCCCC
Q 019058 133 TFDHANAANQVYERFNSCLDYVLSTGLPDANLTPDDLVNLPIYSVGHRPA 182 (346)
Q Consensus 133 tFDH~~iA~ev~~~F~~~~~~L~~~g~~~~gl~~~~~~~lPv~gVGHS~a 182 (346)
.+=|..-- +.+.-+++.|+..+.+ -|++-||=|.|
T Consensus 124 ~~yh~G~t----~D~~~~l~~l~~~~~~-----------r~~~avG~SLG 158 (345)
T COG0429 124 RLYHSGET----EDIRFFLDWLKARFPP-----------RPLYAVGFSLG 158 (345)
T ss_pred ceecccch----hHHHHHHHHHHHhCCC-----------CceEEEEeccc
Confidence 44454443 5567788888776442 49999999944
No 99
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=22.02 E-value=75 Score=32.22 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCcEEEEecCCCC
Q 019058 112 SYLKELLAKEGFLVISVPYNVT 133 (346)
Q Consensus 112 r~LLE~La~~Gy~ViAtPy~~t 133 (346)
+|++++|-++||.|+||=-.++
T Consensus 20 swivk~LL~rGY~V~gtVR~~~ 41 (327)
T KOG1502|consen 20 SWIVKLLLSRGYTVRGTVRDPE 41 (327)
T ss_pred HHHHHHHHhCCCEEEEEEcCcc
Confidence 5999999999999999966654
No 100
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=21.88 E-value=5.3e+02 Score=26.45 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCCcHHHHHHhchhccccCCceeEEeecCCCc
Q 019058 293 IDQTDLLEETLKPRMESIGGTVEKVQLNGNHI 324 (346)
Q Consensus 293 IDqT~~L~~~L~~r~~s~~~~v~~~~LpGnHL 324 (346)
++.+..|.+.|+.. +..+.+++.+|+|=
T Consensus 364 ~~~~~~l~~~L~~~----G~~~~~~~~~GGHd 391 (411)
T PRK10439 364 MRANQALYAQLHPA----GHSVFWRQVDGGHD 391 (411)
T ss_pred HHHHHHHHHHHHHC----CCcEEEEECCCCcC
Confidence 45667788999885 45689999999993
No 101
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.89 E-value=87 Score=31.67 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=30.6
Q ss_pred eEeccEEEeCCCCCCCCcEEEEeecccccc--ccchhhHHHHHHHHHhCCcEEEEe
Q 019058 75 QRLGSCLIIPPLNGKKPRAIIKFLGGAFIG--AVPEVTYSYLKELLAKEGFLVISV 128 (346)
Q Consensus 75 ~r~~~~~vl~PP~~~~P~gVIhFiGGAfvG--a~PqitYr~LLE~La~~Gy~ViAt 128 (346)
-||.+|+++|.-...+=-+||||+|=--=| ..+++.| +-.||+|.+.
T Consensus 67 ~rI~gwlvlP~~~~~~~P~vV~fhGY~g~~g~~~~~l~w-------a~~Gyavf~M 115 (321)
T COG3458 67 ARIKGWLVLPRHEKGKLPAVVQFHGYGGRGGEWHDMLHW-------AVAGYAVFVM 115 (321)
T ss_pred ceEEEEEEeecccCCccceEEEEeeccCCCCCccccccc-------cccceeEEEE
Confidence 579999999764334446999999822112 2344433 5789998875
Done!