Query 019059
Match_columns 346
No_of_seqs 508 out of 2096
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 06:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1007 WD repeat protein TSSC 100.0 1.4E-46 2.9E-51 285.4 27.7 340 3-344 1-360 (370)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-47 4.1E-52 303.8 21.1 280 15-343 174-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.4E-44 3E-49 284.3 25.3 286 12-345 111-439 (480)
4 KOG0271 Notchless-like WD40 re 100.0 2.8E-44 6E-49 282.6 24.5 285 9-343 150-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 2E-44 4.3E-49 286.6 19.2 243 62-345 172-418 (459)
6 KOG0286 G-protein beta subunit 100.0 4.5E-40 9.8E-45 250.3 28.8 287 12-343 51-343 (343)
7 KOG0264 Nucleosome remodeling 100.0 3.4E-40 7.4E-45 265.1 29.1 310 27-345 61-404 (422)
8 KOG0315 G-protein beta subunit 100.0 7.7E-40 1.7E-44 243.7 26.5 264 39-345 17-288 (311)
9 KOG0279 G protein beta subunit 100.0 9.6E-39 2.1E-43 241.6 30.4 288 11-345 10-313 (315)
10 KOG0277 Peroxisomal targeting 100.0 9E-40 1.9E-44 244.0 24.0 281 28-344 21-308 (311)
11 KOG0284 Polyadenylation factor 100.0 9.1E-41 2E-45 264.8 18.1 276 18-343 98-378 (464)
12 KOG0279 G protein beta subunit 100.0 4.5E-39 9.7E-44 243.4 26.3 254 56-346 6-263 (315)
13 KOG0263 Transcription initiati 100.0 6E-40 1.3E-44 280.2 24.0 252 61-346 374-650 (707)
14 KOG0286 G-protein beta subunit 100.0 1.7E-38 3.6E-43 241.8 26.9 248 59-345 49-303 (343)
15 KOG0263 Transcription initiati 100.0 9.4E-38 2E-42 266.8 25.8 299 7-333 369-703 (707)
16 KOG0284 Polyadenylation factor 100.0 3.9E-39 8.4E-44 255.5 15.4 238 66-345 97-337 (464)
17 KOG0293 WD40 repeat-containing 100.0 1.4E-37 3E-42 247.2 23.7 286 16-345 224-513 (519)
18 KOG0265 U5 snRNP-specific prot 100.0 1.5E-36 3.2E-41 232.0 26.6 282 15-344 46-337 (338)
19 KOG0273 Beta-transducin family 100.0 2.8E-36 6.1E-41 243.4 28.3 279 16-346 235-524 (524)
20 KOG0295 WD40 repeat-containing 100.0 5.8E-37 1.3E-41 239.9 22.5 263 39-344 127-405 (406)
21 KOG0315 G-protein beta subunit 100.0 4.9E-36 1.1E-40 223.5 25.9 274 4-323 28-309 (311)
22 KOG0282 mRNA splicing factor [ 100.0 4.3E-37 9.2E-42 248.9 20.8 290 9-343 207-503 (503)
23 KOG0291 WD40-repeat-containing 100.0 1.7E-35 3.7E-40 251.6 31.4 311 6-345 297-612 (893)
24 KOG0295 WD40 repeat-containing 100.0 4.4E-37 9.5E-42 240.6 18.5 246 59-345 102-364 (406)
25 KOG0273 Beta-transducin family 100.0 3.2E-36 6.9E-41 243.1 23.2 281 17-345 179-482 (524)
26 KOG0276 Vesicle coat complex C 100.0 2.1E-36 4.4E-41 252.2 22.5 246 59-344 7-256 (794)
27 KOG0313 Microtubule binding pr 100.0 2.1E-35 4.5E-40 232.5 25.4 284 18-343 107-416 (423)
28 KOG0318 WD40 repeat stress pro 100.0 3E-34 6.6E-39 234.8 32.2 291 13-346 144-561 (603)
29 KOG0285 Pleiotropic regulator 100.0 6.3E-36 1.4E-40 233.8 21.4 243 58-345 144-389 (460)
30 KOG0645 WD40 repeat protein [G 100.0 6.1E-34 1.3E-38 214.8 30.8 294 11-346 9-312 (312)
31 cd00200 WD40 WD40 domain, foun 100.0 6.9E-34 1.5E-38 235.8 32.5 281 14-343 7-289 (289)
32 KOG0265 U5 snRNP-specific prot 100.0 3.6E-35 7.8E-40 224.4 22.5 251 58-345 40-296 (338)
33 KOG0266 WD40 repeat-containing 100.0 2E-34 4.3E-39 251.4 29.5 284 16-345 159-454 (456)
34 KOG0291 WD40-repeat-containing 100.0 5.4E-34 1.2E-38 242.6 30.3 281 17-345 266-550 (893)
35 KOG0319 WD40-repeat-containing 100.0 2.8E-34 6E-39 243.7 25.8 279 24-343 332-617 (775)
36 PLN00181 protein SPA1-RELATED; 100.0 5.8E-33 1.3E-37 259.4 35.6 294 16-344 483-792 (793)
37 KOG0296 Angio-associated migra 100.0 1.9E-33 4.1E-38 220.4 26.7 283 12-345 60-398 (399)
38 KOG0277 Peroxisomal targeting 100.0 3.5E-34 7.5E-39 214.2 21.3 246 69-345 12-265 (311)
39 KOG0292 Vesicle coat complex C 100.0 9.7E-35 2.1E-39 251.1 20.7 246 61-346 5-281 (1202)
40 KOG0316 Conserved WD40 repeat- 100.0 7.9E-34 1.7E-38 210.1 22.0 241 59-345 11-257 (307)
41 KOG0266 WD40 repeat-containing 100.0 2.9E-33 6.2E-38 244.1 27.4 246 59-345 152-409 (456)
42 KOG0285 Pleiotropic regulator 100.0 3E-33 6.5E-38 218.9 24.4 290 12-344 147-438 (460)
43 KOG0643 Translation initiation 100.0 2.2E-33 4.9E-38 211.4 22.4 263 60-345 5-317 (327)
44 KOG0278 Serine/threonine kinas 100.0 4E-34 8.7E-39 213.5 16.6 244 58-345 52-297 (334)
45 KOG0772 Uncharacterized conser 100.0 4.2E-33 9.1E-38 227.7 23.5 302 11-342 162-484 (641)
46 KOG0319 WD40-repeat-containing 100.0 6.2E-33 1.4E-37 235.5 24.1 264 40-345 301-577 (775)
47 KOG0276 Vesicle coat complex C 100.0 2.3E-32 4.9E-37 228.2 26.7 277 17-341 14-295 (794)
48 KOG0281 Beta-TrCP (transducin 100.0 5.5E-34 1.2E-38 222.4 15.4 260 40-345 215-477 (499)
49 KOG0292 Vesicle coat complex C 100.0 1E-32 2.3E-37 238.6 24.8 279 18-345 11-321 (1202)
50 cd00200 WD40 WD40 domain, foun 100.0 9.7E-32 2.1E-36 222.9 29.0 243 60-345 4-249 (289)
51 PLN00181 protein SPA1-RELATED; 100.0 6.8E-32 1.5E-36 252.2 30.6 256 61-344 479-737 (793)
52 KOG0645 WD40 repeat protein [G 100.0 3E-31 6.5E-36 200.3 27.8 247 56-344 5-260 (312)
53 KOG0282 mRNA splicing factor [ 100.0 3.3E-33 7.2E-38 226.5 16.8 249 58-345 207-462 (503)
54 KOG0281 Beta-TrCP (transducin 100.0 3.2E-33 6.8E-38 218.2 15.1 228 64-345 196-428 (499)
55 KOG1407 WD40 repeat protein [F 100.0 4.5E-32 9.7E-37 203.7 20.6 247 59-345 14-261 (313)
56 KOG0318 WD40 repeat stress pro 100.0 1.5E-30 3.3E-35 213.3 31.0 288 12-345 99-392 (603)
57 KOG0283 WD40 repeat-containing 100.0 1.3E-31 2.8E-36 231.2 24.0 251 60-345 261-576 (712)
58 KOG0305 Anaphase promoting com 100.0 3.8E-31 8.2E-36 222.4 26.0 259 40-344 195-460 (484)
59 KOG0306 WD40-repeat-containing 100.0 3.6E-31 7.7E-36 225.4 25.8 263 40-345 392-664 (888)
60 KOG0302 Ribosome Assembly prot 100.0 4.5E-31 9.8E-36 208.0 22.9 281 55-341 141-435 (440)
61 KOG1407 WD40 repeat protein [F 100.0 1.8E-30 3.9E-35 195.1 24.7 279 17-345 21-311 (313)
62 KOG0288 WD40 repeat protein Ti 100.0 1.7E-32 3.7E-37 218.2 13.6 259 39-343 194-459 (459)
63 KOG0316 Conserved WD40 repeat- 100.0 2.3E-30 4.9E-35 191.9 23.9 275 17-342 18-296 (307)
64 PTZ00420 coronin; Provisional 100.0 8.2E-30 1.8E-34 222.7 31.5 229 43-284 52-294 (568)
65 KOG0640 mRNA cleavage stimulat 100.0 3.9E-31 8.3E-36 203.6 20.3 280 52-343 99-424 (430)
66 KOG0268 Sof1-like rRNA process 100.0 1.5E-31 3.4E-36 209.6 17.6 280 11-344 61-344 (433)
67 KOG0973 Histone transcription 100.0 3.2E-30 7E-35 228.2 27.6 300 12-345 9-355 (942)
68 PTZ00420 coronin; Provisional 100.0 1.7E-29 3.7E-34 220.7 31.0 228 87-345 50-293 (568)
69 KOG0313 Microtubule binding pr 100.0 3E-30 6.4E-35 203.5 23.5 250 17-284 148-419 (423)
70 KOG0641 WD40 repeat protein [G 100.0 1.2E-28 2.6E-33 181.9 29.1 294 15-346 31-350 (350)
71 KOG0264 Nucleosome remodeling 100.0 2.1E-30 4.6E-35 208.9 20.8 278 50-346 23-348 (422)
72 PTZ00421 coronin; Provisional 100.0 9.2E-30 2E-34 221.4 26.5 233 60-325 70-314 (493)
73 KOG0275 Conserved WD40 repeat- 100.0 5.9E-31 1.3E-35 203.9 16.7 278 20-343 217-507 (508)
74 PTZ00421 coronin; Provisional 100.0 7.4E-29 1.6E-33 215.7 30.4 252 66-345 21-290 (493)
75 KOG0289 mRNA splicing factor [ 100.0 2.3E-29 5E-34 201.8 24.9 281 19-345 222-506 (506)
76 KOG0310 Conserved WD40 repeat- 100.0 9.6E-30 2.1E-34 206.8 22.8 242 59-342 62-306 (487)
77 KOG0310 Conserved WD40 repeat- 100.0 7E-30 1.5E-34 207.5 21.1 240 64-345 25-268 (487)
78 KOG0294 WD40 repeat-containing 100.0 1.1E-28 2.3E-33 190.4 26.1 266 30-345 3-281 (362)
79 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-28 3.6E-33 189.6 27.2 244 61-345 10-262 (311)
80 KOG0306 WD40-repeat-containing 100.0 2.9E-28 6.3E-33 207.8 28.8 262 40-346 342-623 (888)
81 KOG0641 WD40 repeat protein [G 100.0 7.2E-28 1.6E-32 177.9 26.1 262 54-346 21-304 (350)
82 KOG0307 Vesicle coat complex C 100.0 4E-30 8.6E-35 228.7 16.7 278 41-346 40-328 (1049)
83 KOG0293 WD40 repeat-containing 100.0 6.4E-29 1.4E-33 198.1 21.8 248 59-345 218-470 (519)
84 KOG0268 Sof1-like rRNA process 100.0 5E-30 1.1E-34 201.2 15.0 241 59-345 60-302 (433)
85 KOG0274 Cdc4 and related F-box 100.0 1.4E-28 3.1E-33 214.3 25.5 253 40-345 226-482 (537)
86 KOG0296 Angio-associated migra 100.0 8.5E-29 1.8E-33 194.4 21.6 243 58-345 57-356 (399)
87 KOG0290 Conserved WD40 repeat- 100.0 1E-27 2.2E-32 183.1 25.8 307 8-341 39-361 (364)
88 KOG0289 mRNA splicing factor [ 100.0 3.7E-28 8.1E-33 194.9 23.0 236 66-343 220-460 (506)
89 KOG0269 WD40 repeat-containing 100.0 5.1E-29 1.1E-33 213.0 19.2 241 67-341 89-336 (839)
90 KOG1446 Histone H3 (Lys4) meth 100.0 1.1E-26 2.3E-31 179.7 29.7 278 16-344 14-302 (311)
91 KOG0275 Conserved WD40 repeat- 100.0 1.1E-28 2.4E-33 191.4 17.1 253 59-345 207-467 (508)
92 KOG0647 mRNA export protein (c 100.0 2.6E-27 5.6E-32 181.8 24.1 269 15-332 26-310 (347)
93 KOG0308 Conserved WD40 repeat- 100.0 1.2E-28 2.5E-33 207.0 17.5 286 21-345 29-327 (735)
94 KOG1332 Vesicle coat complex C 100.0 4.2E-28 9E-33 180.8 18.5 253 61-344 7-285 (299)
95 KOG0639 Transducin-like enhanc 100.0 3.8E-28 8.3E-33 198.4 20.0 264 40-345 438-704 (705)
96 KOG0278 Serine/threonine kinas 100.0 6.2E-29 1.3E-33 185.9 13.9 201 61-284 96-298 (334)
97 KOG0772 Uncharacterized conser 100.0 8.1E-28 1.8E-32 197.0 20.3 254 59-344 161-444 (641)
98 KOG0647 mRNA export protein (c 100.0 2.3E-27 4.9E-32 182.1 21.3 243 64-345 26-281 (347)
99 KOG1036 Mitotic spindle checkp 100.0 1.3E-26 2.8E-31 178.5 25.2 266 16-335 13-294 (323)
100 KOG0643 Translation initiation 100.0 3.3E-27 7.2E-32 178.2 21.4 246 11-284 5-318 (327)
101 KOG0288 WD40 repeat protein Ti 100.0 6.7E-29 1.4E-33 197.9 12.8 245 59-346 169-418 (459)
102 KOG0300 WD40 repeat-containing 100.0 6.9E-28 1.5E-32 186.5 17.9 252 57-346 140-429 (481)
103 KOG0308 Conserved WD40 repeat- 100.0 5.7E-28 1.2E-32 202.9 17.9 248 64-345 20-285 (735)
104 KOG0299 U3 snoRNP-associated p 100.0 9.1E-27 2E-31 188.2 23.9 284 15-342 141-453 (479)
105 KOG4283 Transcription-coupled 100.0 2.9E-27 6.2E-32 181.1 19.8 284 42-343 25-363 (397)
106 KOG0301 Phospholipase A2-activ 100.0 7.2E-27 1.6E-31 197.7 23.8 253 39-346 32-289 (745)
107 KOG2445 Nuclear pore complex c 100.0 5.9E-26 1.3E-30 174.8 25.6 270 62-343 10-316 (361)
108 KOG1036 Mitotic spindle checkp 100.0 2E-26 4.3E-31 177.5 22.6 239 65-345 13-262 (323)
109 KOG2096 WD40 repeat protein [G 100.0 1.3E-26 2.9E-31 179.3 21.6 274 56-343 77-400 (420)
110 KOG0300 WD40 repeat-containing 100.0 9.6E-27 2.1E-31 180.2 20.6 269 40-345 168-476 (481)
111 KOG0270 WD40 repeat-containing 100.0 2.4E-26 5.1E-31 185.1 23.5 278 42-345 150-449 (463)
112 KOG1408 WD40 repeat protein [F 100.0 9.4E-27 2E-31 197.9 22.3 242 64-345 458-713 (1080)
113 KOG0299 U3 snoRNP-associated p 100.0 1.9E-26 4.2E-31 186.4 22.0 252 58-345 135-410 (479)
114 KOG0274 Cdc4 and related F-box 100.0 1.4E-26 3E-31 201.9 22.8 230 64-345 207-441 (537)
115 KOG0321 WD40 repeat-containing 100.0 3.2E-26 6.9E-31 192.1 23.7 284 25-345 61-391 (720)
116 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2E-25 4.4E-30 186.9 28.6 263 39-346 8-280 (300)
117 KOG0973 Histone transcription 100.0 2.3E-26 5E-31 203.9 22.0 252 64-344 12-311 (942)
118 KOG0646 WD40 repeat protein [G 100.0 1.4E-26 3.1E-31 187.4 18.7 248 42-327 61-332 (476)
119 KOG0283 WD40 repeat-containing 100.0 3.1E-26 6.6E-31 198.2 21.6 242 15-283 266-576 (712)
120 KOG0640 mRNA cleavage stimulat 99.9 2.8E-26 6.1E-31 176.9 18.7 242 22-284 118-427 (430)
121 KOG0305 Anaphase promoting com 99.9 9.9E-26 2.1E-30 189.9 22.5 238 17-284 218-462 (484)
122 KOG0294 WD40 repeat-containing 99.9 3.4E-25 7.3E-30 171.2 23.1 218 39-284 60-282 (362)
123 KOG0269 WD40 repeat-containing 99.9 1.4E-26 3.1E-31 198.2 16.8 230 39-284 107-341 (839)
124 KOG2055 WD40 repeat protein [G 99.9 4.4E-25 9.6E-30 178.6 24.2 286 16-345 213-512 (514)
125 KOG0302 Ribosome Assembly prot 99.9 7.1E-26 1.5E-30 178.9 17.4 211 117-345 148-378 (440)
126 KOG0267 Microtubule severing p 99.9 3.1E-27 6.8E-32 200.7 9.7 233 60-335 23-258 (825)
127 KOG1539 WD repeat protein [Gen 99.9 2.9E-24 6.4E-29 185.5 27.4 293 6-343 192-646 (910)
128 KOG0267 Microtubule severing p 99.9 3.6E-27 7.9E-32 200.4 9.1 213 88-345 11-226 (825)
129 KOG0639 Transducin-like enhanc 99.9 8.9E-26 1.9E-30 184.7 16.5 245 59-344 413-662 (705)
130 KOG4283 Transcription-coupled 99.9 2.5E-25 5.4E-30 170.6 17.5 224 117-346 40-277 (397)
131 KOG4328 WD40 protein [Function 99.9 1.2E-24 2.7E-29 175.9 21.6 259 59-345 180-450 (498)
132 KOG0301 Phospholipase A2-activ 99.9 9.5E-25 2.1E-29 185.0 21.6 240 57-345 6-249 (745)
133 KOG2919 Guanine nucleotide-bin 99.9 2.9E-24 6.3E-29 166.7 21.8 253 67-346 51-328 (406)
134 KOG1332 Vesicle coat complex C 99.9 2.5E-24 5.5E-29 160.8 20.2 245 23-284 18-287 (299)
135 KOG1274 WD40 repeat protein [G 99.9 5.9E-24 1.3E-28 185.5 25.6 240 62-345 10-262 (933)
136 KOG0650 WD40 repeat nucleolar 99.9 2.2E-24 4.9E-29 179.9 20.3 258 59-343 394-733 (733)
137 KOG0646 WD40 repeat protein [G 99.9 1.3E-23 2.7E-28 170.5 23.7 278 39-345 15-307 (476)
138 KOG2048 WD40 repeat protein [G 99.9 5.1E-23 1.1E-27 174.1 28.1 282 16-343 25-317 (691)
139 KOG2106 Uncharacterized conser 99.9 1.2E-22 2.6E-27 166.5 29.3 260 41-343 221-519 (626)
140 KOG1273 WD40 repeat protein [G 99.9 1E-23 2.2E-28 163.2 21.4 279 20-344 27-321 (405)
141 KOG2055 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 170.7 21.0 248 66-344 214-466 (514)
142 KOG4378 Nuclear protein COP1 [ 99.9 6.1E-24 1.3E-28 173.8 19.2 268 41-346 11-281 (673)
143 KOG2048 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 171.9 27.0 239 64-345 24-275 (691)
144 KOG0307 Vesicle coat complex C 99.9 6.4E-25 1.4E-29 195.9 12.9 253 70-345 11-284 (1049)
145 KOG1539 WD repeat protein [Gen 99.9 5.2E-22 1.1E-26 171.8 29.7 296 24-345 168-606 (910)
146 KOG0270 WD40 repeat-containing 99.9 4.3E-23 9.4E-28 166.4 21.0 234 27-284 191-450 (463)
147 KOG1063 RNA polymerase II elon 99.9 6.4E-22 1.4E-26 168.0 28.7 306 7-345 182-648 (764)
148 KOG2106 Uncharacterized conser 99.9 9.4E-22 2E-26 161.3 27.7 307 17-345 105-477 (626)
149 KOG1188 WD40 repeat protein [G 99.9 3.3E-23 7.2E-28 161.9 18.1 245 88-344 47-345 (376)
150 KOG4378 Nuclear protein COP1 [ 99.9 4.3E-23 9.3E-28 168.9 19.4 218 69-325 83-304 (673)
151 KOG1063 RNA polymerase II elon 99.9 5.6E-22 1.2E-26 168.3 26.5 278 42-345 169-602 (764)
152 KOG4328 WD40 protein [Function 99.9 2.8E-23 6E-28 168.2 17.8 218 109-344 175-398 (498)
153 KOG2919 Guanine nucleotide-bin 99.9 1.3E-21 2.7E-26 152.2 23.7 277 18-335 51-360 (406)
154 KOG1274 WD40 repeat protein [G 99.9 2.1E-21 4.6E-26 169.8 27.0 255 19-327 16-283 (933)
155 KOG1445 Tumor-specific antigen 99.9 4.3E-22 9.3E-27 167.8 21.9 137 189-345 602-750 (1012)
156 KOG0290 Conserved WD40 repeat- 99.9 1.2E-21 2.6E-26 150.2 21.7 258 62-345 41-318 (364)
157 KOG2096 WD40 repeat protein [G 99.9 3.4E-22 7.3E-27 155.1 18.3 212 114-345 80-308 (420)
158 KOG1273 WD40 repeat protein [G 99.9 6.1E-22 1.3E-26 153.4 19.3 248 63-344 22-279 (405)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3E-21 6.5E-26 161.6 25.1 220 87-345 7-237 (300)
160 KOG1007 WD repeat protein TSSC 99.9 9.1E-22 2E-26 150.7 19.1 229 89-344 38-288 (370)
161 KOG2445 Nuclear pore complex c 99.9 1.2E-20 2.5E-25 145.9 25.1 257 18-284 15-319 (361)
162 KOG1009 Chromatin assembly com 99.9 2.1E-21 4.6E-26 155.1 21.6 292 17-345 14-372 (434)
163 PRK11028 6-phosphogluconolacto 99.9 9.6E-20 2.1E-24 154.2 32.3 277 39-345 9-304 (330)
164 KOG1587 Cytoplasmic dynein int 99.9 6.8E-21 1.5E-25 165.3 25.1 227 91-345 222-472 (555)
165 KOG0321 WD40 repeat-containing 99.9 5E-21 1.1E-25 161.2 23.0 259 16-285 100-393 (720)
166 KOG4227 WD40 repeat protein [G 99.9 8.5E-22 1.8E-26 157.1 17.3 277 54-344 45-386 (609)
167 KOG1587 Cytoplasmic dynein int 99.9 2.2E-20 4.7E-25 162.2 27.1 275 43-345 223-516 (555)
168 KOG0642 Cell-cycle nuclear pro 99.9 5.2E-22 1.1E-26 164.9 16.1 257 60-345 289-561 (577)
169 KOG1408 WD40 repeat protein [F 99.9 1.2E-21 2.6E-26 167.2 18.5 245 19-284 462-714 (1080)
170 KOG1034 Transcriptional repres 99.9 3.2E-21 6.9E-26 150.2 19.2 265 41-344 63-382 (385)
171 KOG1538 Uncharacterized conser 99.9 5.8E-21 1.3E-25 162.0 21.2 272 16-344 12-292 (1081)
172 KOG0303 Actin-binding protein 99.9 1E-20 2.2E-25 150.8 20.8 231 40-284 55-295 (472)
173 KOG0303 Actin-binding protein 99.9 2.1E-20 4.6E-25 149.0 20.1 245 76-345 42-294 (472)
174 KOG0322 G-protein beta subunit 99.9 1.2E-20 2.5E-25 142.8 15.4 246 61-344 10-322 (323)
175 KOG1034 Transcriptional repres 99.9 2.9E-20 6.3E-25 144.9 15.7 224 41-284 114-384 (385)
176 KOG0649 WD40 repeat protein [G 99.9 3.1E-19 6.6E-24 133.8 20.3 243 66-346 11-275 (325)
177 KOG0642 Cell-cycle nuclear pro 99.8 9.5E-20 2.1E-24 151.6 16.1 258 11-284 289-562 (577)
178 KOG1517 Guanine nucleotide bin 99.8 7.6E-19 1.7E-23 156.2 22.7 248 67-346 1066-1334(1387)
179 COG2319 FOG: WD40 repeat [Gene 99.8 5.2E-17 1.1E-21 142.5 33.5 284 18-345 67-359 (466)
180 KOG2110 Uncharacterized conser 99.8 1.9E-17 4.1E-22 131.4 24.6 234 66-346 6-249 (391)
181 KOG1523 Actin-related protein 99.8 4.6E-18 9.9E-23 132.4 20.7 204 64-284 9-237 (361)
182 COG2319 FOG: WD40 repeat [Gene 99.8 2.6E-17 5.6E-22 144.4 27.9 244 60-345 60-314 (466)
183 KOG0650 WD40 repeat nucleolar 99.8 3.3E-18 7.2E-23 143.5 20.0 201 60-280 516-732 (733)
184 KOG1523 Actin-related protein 99.8 8.8E-18 1.9E-22 130.8 19.9 223 116-345 6-236 (361)
185 KOG1445 Tumor-specific antigen 99.8 1.3E-18 2.7E-23 147.2 16.3 244 74-344 588-843 (1012)
186 PRK01742 tolB translocation pr 99.8 1.1E-17 2.3E-22 146.1 22.9 211 90-344 183-400 (429)
187 PF10282 Lactonase: Lactonase, 99.8 1.2E-15 2.7E-20 129.3 34.6 294 31-345 2-322 (345)
188 KOG1310 WD40 repeat protein [G 99.8 1.9E-18 4E-23 143.7 16.4 224 114-345 44-303 (758)
189 KOG1538 Uncharacterized conser 99.8 3.4E-18 7.4E-23 145.4 18.1 233 67-345 14-252 (1081)
190 PRK11028 6-phosphogluconolacto 99.8 8.3E-17 1.8E-21 136.3 26.6 233 87-345 8-258 (330)
191 PRK01742 tolB translocation pr 99.8 1E-17 2.3E-22 146.1 21.5 240 41-325 183-426 (429)
192 KOG1517 Guanine nucleotide bin 99.8 2.4E-17 5.1E-22 146.9 23.4 272 40-346 1084-1382(1387)
193 KOG4497 Uncharacterized conser 99.8 1.5E-17 3.3E-22 130.1 19.6 245 61-346 44-392 (447)
194 KOG1009 Chromatin assembly com 99.8 1.8E-17 4E-22 132.9 20.5 169 65-239 13-195 (434)
195 KOG1334 WD40 repeat protein [G 99.8 1.9E-18 4.1E-23 141.6 15.2 298 9-344 135-465 (559)
196 KOG1188 WD40 repeat protein [G 99.8 6.7E-18 1.5E-22 132.5 17.4 188 136-345 43-242 (376)
197 KOG2111 Uncharacterized conser 99.8 6.1E-17 1.3E-21 126.1 22.3 233 68-345 8-256 (346)
198 KOG0649 WD40 repeat protein [G 99.8 2.3E-16 5.1E-21 118.5 24.6 273 21-342 15-313 (325)
199 KOG2394 WD40 protein DMR-N9 [G 99.8 9.7E-18 2.1E-22 139.1 18.8 245 67-345 125-452 (636)
200 KOG0771 Prolactin regulatory e 99.8 4.1E-18 8.9E-23 137.3 15.2 193 124-344 148-353 (398)
201 KOG0771 Prolactin regulatory e 99.8 3.2E-18 6.9E-23 137.9 14.5 196 69-284 148-355 (398)
202 KOG1272 WD40-repeat-containing 99.8 5.7E-19 1.2E-23 143.8 9.7 228 67-343 131-360 (545)
203 KOG3881 Uncharacterized conser 99.8 4.6E-17 1E-21 130.0 19.6 253 62-345 52-320 (412)
204 KOG0644 Uncharacterized conser 99.8 5.7E-19 1.2E-23 153.4 9.6 237 59-345 184-426 (1113)
205 PRK03629 tolB translocation pr 99.8 1.9E-16 4.1E-21 137.9 25.1 239 42-325 179-428 (429)
206 KOG1310 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 137.4 16.6 214 59-286 44-306 (758)
207 COG2706 3-carboxymuconate cycl 99.8 8.5E-15 1.8E-19 116.7 30.2 296 29-346 3-322 (346)
208 KOG0322 G-protein beta subunit 99.8 3.8E-17 8.3E-22 124.0 15.9 258 10-282 8-322 (323)
209 KOG2139 WD40 repeat protein [G 99.8 5.7E-16 1.2E-20 122.8 21.8 248 66-334 99-364 (445)
210 KOG1524 WD40 repeat-containing 99.8 6.1E-17 1.3E-21 134.5 16.7 198 88-341 82-282 (737)
211 KOG1524 WD40 repeat-containing 99.7 6.5E-17 1.4E-21 134.3 16.1 226 63-335 12-246 (737)
212 KOG1963 WD40 repeat protein [G 99.7 4.9E-15 1.1E-19 130.0 27.6 294 21-345 210-538 (792)
213 KOG2139 WD40 repeat protein [G 99.7 3.2E-15 6.9E-20 118.6 22.6 243 24-284 106-384 (445)
214 KOG4497 Uncharacterized conser 99.7 2.9E-17 6.2E-22 128.6 10.2 221 70-343 13-238 (447)
215 PF02239 Cytochrom_D1: Cytochr 99.7 2.4E-14 5.2E-19 121.3 28.7 268 40-345 14-347 (369)
216 PRK05137 tolB translocation pr 99.7 3.9E-15 8.4E-20 130.5 24.5 228 78-345 166-412 (435)
217 PRK05137 tolB translocation pr 99.7 5.5E-15 1.2E-19 129.5 25.3 218 42-284 182-413 (435)
218 PRK03629 tolB translocation pr 99.7 4.5E-15 9.7E-20 129.4 24.4 215 91-346 179-407 (429)
219 KOG2110 Uncharacterized conser 99.7 1E-13 2.2E-18 110.5 29.3 231 24-286 13-251 (391)
220 KOG1240 Protein kinase contain 99.7 6.9E-15 1.5E-19 133.4 25.0 280 56-345 1039-1334(1431)
221 PRK04922 tolB translocation pr 99.7 4.9E-15 1.1E-19 129.7 23.9 237 43-324 185-432 (433)
222 PF08662 eIF2A: Eukaryotic tra 99.7 1.9E-15 4.2E-20 116.5 18.0 152 124-284 9-180 (194)
223 KOG2111 Uncharacterized conser 99.7 1.2E-13 2.5E-18 108.1 27.4 234 22-285 11-258 (346)
224 PRK04922 tolB translocation pr 99.7 6.5E-15 1.4E-19 128.9 23.3 214 91-345 184-411 (433)
225 PRK02889 tolB translocation pr 99.7 8.8E-15 1.9E-19 127.7 23.5 240 42-325 176-425 (427)
226 KOG2321 WD40 repeat protein [G 99.7 3.1E-15 6.7E-20 125.4 19.0 239 60-344 46-301 (703)
227 KOG1963 WD40 repeat protein [G 99.7 6.2E-15 1.3E-19 129.4 21.3 236 70-344 21-321 (792)
228 KOG0644 Uncharacterized conser 99.7 1.7E-16 3.7E-21 138.3 11.4 273 18-343 192-466 (1113)
229 KOG1272 WD40-repeat-containing 99.7 6.4E-17 1.4E-21 132.0 8.0 193 121-345 130-323 (545)
230 PF08662 eIF2A: Eukaryotic tra 99.7 6.7E-15 1.4E-19 113.5 18.2 148 172-346 9-180 (194)
231 KOG1240 Protein kinase contain 99.7 6.1E-14 1.3E-18 127.4 26.7 294 39-343 1068-1431(1431)
232 PRK02889 tolB translocation pr 99.7 1.9E-14 4.2E-19 125.5 23.2 209 91-338 176-394 (427)
233 KOG0280 Uncharacterized conser 99.7 2.7E-14 5.8E-19 110.4 20.6 301 16-343 12-331 (339)
234 KOG1334 WD40 repeat protein [G 99.7 4.3E-15 9.3E-20 122.2 15.9 262 59-344 136-423 (559)
235 KOG1354 Serine/threonine prote 99.7 5.1E-14 1.1E-18 111.2 21.2 314 16-342 25-431 (433)
236 KOG4227 WD40 repeat protein [G 99.7 3.9E-15 8.5E-20 119.4 14.5 168 115-284 51-226 (609)
237 KOG3881 Uncharacterized conser 99.7 1.7E-14 3.7E-19 115.6 18.0 205 66-284 106-321 (412)
238 KOG2394 WD40 protein DMR-N9 [G 99.6 5.7E-15 1.2E-19 122.9 15.1 199 123-345 126-362 (636)
239 PF10282 Lactonase: Lactonase, 99.6 1.8E-12 3.9E-17 110.0 30.4 256 20-284 40-323 (345)
240 PRK04792 tolB translocation pr 99.6 2.6E-13 5.5E-18 118.9 24.9 238 43-325 199-447 (448)
241 KOG1354 Serine/threonine prote 99.6 3.7E-14 7.9E-19 112.0 17.3 251 64-344 24-358 (433)
242 TIGR02800 propeller_TolB tol-p 99.6 2.4E-13 5.2E-18 119.2 24.1 216 42-283 170-397 (417)
243 PRK01029 tolB translocation pr 99.6 9.8E-13 2.1E-17 114.4 24.9 232 77-345 146-403 (428)
244 PRK00178 tolB translocation pr 99.6 9.6E-13 2.1E-17 115.6 25.0 225 60-325 193-428 (430)
245 TIGR02800 propeller_TolB tol-p 99.6 8.4E-13 1.8E-17 115.8 24.4 228 77-344 155-396 (417)
246 KOG0280 Uncharacterized conser 99.6 4.8E-13 1E-17 103.6 19.6 211 89-326 44-265 (339)
247 PRK04792 tolB translocation pr 99.6 9.3E-13 2E-17 115.4 23.3 214 92-345 199-425 (448)
248 PF02239 Cytochrom_D1: Cytochr 99.6 3.2E-12 7E-17 108.4 25.6 240 88-345 13-302 (369)
249 KOG1409 Uncharacterized conser 99.6 1E-12 2.2E-17 104.0 19.4 227 37-285 41-272 (404)
250 COG2706 3-carboxymuconate cycl 99.6 7E-11 1.5E-15 94.7 29.4 252 20-284 43-322 (346)
251 PRK00178 tolB translocation pr 99.6 2.2E-12 4.7E-17 113.4 23.1 213 92-345 180-406 (430)
252 KOG2321 WD40 repeat protein [G 99.5 3E-12 6.5E-17 107.8 21.7 266 22-342 57-340 (703)
253 KOG2315 Predicted translation 99.5 9.6E-12 2.1E-16 104.6 21.5 223 41-284 145-391 (566)
254 PRK01029 tolB translocation pr 99.5 3.8E-11 8.3E-16 104.5 25.5 243 42-326 165-426 (428)
255 KOG4547 WD40 repeat-containing 99.5 2.8E-12 6.1E-17 108.4 17.5 185 136-346 8-221 (541)
256 KOG0309 Conserved WD40 repeat- 99.5 6.9E-13 1.5E-17 114.9 13.7 298 18-345 26-339 (1081)
257 KOG2315 Predicted translation 99.5 2.6E-11 5.6E-16 102.0 22.2 235 69-346 129-391 (566)
258 KOG0974 WD-repeat protein WDR6 99.5 1.9E-12 4.2E-17 116.0 16.2 197 121-345 88-288 (967)
259 KOG1409 Uncharacterized conser 99.5 5.8E-12 1.3E-16 99.8 15.9 254 55-345 14-270 (404)
260 KOG2041 WD40 repeat protein [G 99.4 2.9E-11 6.2E-16 104.8 20.7 274 21-344 19-336 (1189)
261 KOG1064 RAVE (regulator of V-A 99.4 2.7E-12 5.8E-17 121.0 13.9 186 64-284 2207-2399(2439)
262 KOG4547 WD40 repeat-containing 99.4 1.1E-10 2.4E-15 99.0 21.8 181 88-284 12-221 (541)
263 PLN02919 haloacid dehalogenase 99.4 3E-10 6.5E-15 108.8 26.7 255 69-345 571-888 (1057)
264 PRK04043 tolB translocation pr 99.4 1E-09 2.2E-14 95.0 25.7 197 66-284 188-401 (419)
265 COG5170 CDC55 Serine/threonine 99.4 7.1E-11 1.5E-15 92.6 15.4 250 64-343 25-365 (460)
266 TIGR02658 TTQ_MADH_Hv methylam 99.3 4E-09 8.7E-14 87.8 26.7 271 27-345 11-330 (352)
267 KOG0309 Conserved WD40 repeat- 99.3 7.6E-12 1.7E-16 108.6 10.9 213 109-346 14-233 (1081)
268 PRK04043 tolB translocation pr 99.3 1.5E-09 3.3E-14 94.0 25.0 191 122-345 189-400 (419)
269 KOG0974 WD-repeat protein WDR6 99.3 1.2E-10 2.6E-15 104.8 18.4 151 170-345 89-246 (967)
270 KOG4714 Nucleoporin [Nuclear s 99.3 3.8E-11 8.2E-16 91.7 12.7 221 113-343 82-316 (319)
271 KOG4532 WD40-like repeat conta 99.3 1.5E-09 3.3E-14 83.5 20.9 184 87-284 90-283 (344)
272 KOG4190 Uncharacterized conser 99.3 2.7E-11 5.9E-16 102.1 11.7 214 55-284 725-949 (1034)
273 PF08450 SGL: SMP-30/Gluconola 99.3 1.7E-08 3.6E-13 81.9 27.7 224 70-334 4-245 (246)
274 KOG1064 RAVE (regulator of V-A 99.3 2.1E-11 4.5E-16 115.3 11.6 187 118-345 2206-2398(2439)
275 KOG2041 WD40 repeat protein [G 99.3 1.7E-10 3.7E-15 100.1 16.1 241 65-336 14-279 (1189)
276 COG4946 Uncharacterized protei 99.3 9.9E-09 2.2E-13 85.3 24.7 146 61-226 355-506 (668)
277 KOG2314 Translation initiation 99.3 2.6E-09 5.6E-14 90.2 21.2 237 69-346 214-574 (698)
278 PLN02919 haloacid dehalogenase 99.2 3.4E-08 7.4E-13 95.0 27.4 202 67-286 625-891 (1057)
279 KOG1832 HIV-1 Vpr-binding prot 99.2 3.5E-11 7.5E-16 106.7 5.7 213 59-327 1095-1314(1516)
280 PF04762 IKI3: IKI3 family; I 99.2 1E-07 2.2E-12 90.1 29.0 247 64-344 74-378 (928)
281 PF15492 Nbas_N: Neuroblastoma 99.2 8.5E-08 1.9E-12 75.0 23.4 215 126-345 3-259 (282)
282 COG5354 Uncharacterized protei 99.2 3.4E-08 7.3E-13 82.8 22.1 200 66-284 174-396 (561)
283 KOG3914 WD repeat protein WDR4 99.1 1.5E-09 3.3E-14 88.1 13.1 152 171-346 65-224 (390)
284 PF04762 IKI3: IKI3 family; I 99.1 4.5E-07 9.9E-12 85.9 30.1 289 40-344 95-455 (928)
285 KOG3914 WD repeat protein WDR4 99.1 3.1E-09 6.8E-14 86.3 13.5 154 124-286 66-226 (390)
286 KOG4714 Nucleoporin [Nuclear s 99.1 1.1E-09 2.3E-14 84.0 10.2 147 179-345 100-254 (319)
287 KOG4532 WD40-like repeat conta 99.1 6E-08 1.3E-12 75.0 18.2 189 136-344 87-281 (344)
288 KOG2695 WD40 repeat protein [G 99.0 9.6E-10 2.1E-14 87.5 8.5 139 184-345 228-376 (425)
289 KOG4190 Uncharacterized conser 99.0 5.5E-10 1.2E-14 94.4 7.2 170 111-285 726-908 (1034)
290 KOG1008 Uncharacterized conser 99.0 4.2E-10 9.1E-15 96.6 6.5 208 66-284 57-276 (783)
291 COG5170 CDC55 Serine/threonine 99.0 9.3E-09 2E-13 81.0 13.0 256 16-284 26-368 (460)
292 PF00930 DPPIV_N: Dipeptidyl p 99.0 4.8E-07 1E-11 77.3 24.3 258 42-335 23-348 (353)
293 KOG2695 WD40 repeat protein [G 99.0 1.9E-09 4.1E-14 85.9 8.0 148 127-284 218-377 (425)
294 TIGR02658 TTQ_MADH_Hv methylam 99.0 2.5E-06 5.3E-11 71.4 26.7 241 24-284 53-331 (352)
295 PF15492 Nbas_N: Neuroblastoma 99.0 7E-07 1.5E-11 70.0 21.4 190 67-284 45-260 (282)
296 KOG1645 RING-finger-containing 99.0 1.1E-07 2.4E-12 77.5 17.0 247 60-345 188-461 (463)
297 COG5354 Uncharacterized protei 98.9 1.8E-07 3.9E-12 78.6 18.0 237 64-345 31-306 (561)
298 PF07433 DUF1513: Protein of u 98.9 3.7E-06 8E-11 68.0 23.2 225 66-335 5-276 (305)
299 TIGR03300 assembly_YfgL outer 98.9 2.6E-06 5.7E-11 73.8 24.1 212 88-342 152-376 (377)
300 PF00400 WD40: WD domain, G-be 98.9 4.6E-09 9.9E-14 58.1 4.6 38 305-343 2-39 (39)
301 KOG1912 WD40 repeat protein [G 98.9 4.6E-07 9.9E-12 80.1 18.9 238 66-343 16-302 (1062)
302 COG4946 Uncharacterized protei 98.9 1.2E-05 2.7E-10 67.5 26.1 192 127-346 273-478 (668)
303 PF00400 WD40: WD domain, G-be 98.9 8.6E-09 1.9E-13 57.0 5.3 38 243-281 2-39 (39)
304 PF08450 SGL: SMP-30/Gluconola 98.8 2.4E-06 5.3E-11 69.2 21.2 195 125-346 4-214 (246)
305 KOG1008 Uncharacterized conser 98.8 2.9E-09 6.2E-14 91.6 3.8 200 121-345 57-275 (783)
306 KOG2114 Vacuolar assembly/sort 98.8 2.6E-06 5.5E-11 76.4 20.8 196 72-284 30-244 (933)
307 KOG2314 Translation initiation 98.8 2.3E-06 5E-11 73.0 19.2 114 169-284 446-574 (698)
308 COG0823 TolB Periplasmic compo 98.8 1.3E-06 2.8E-11 75.6 18.2 166 111-284 183-359 (425)
309 KOG1912 WD40 repeat protein [G 98.7 1.4E-06 3E-11 77.3 17.6 221 42-284 35-305 (1062)
310 KOG1920 IkappaB kinase complex 98.7 1.3E-05 2.7E-10 74.8 24.3 201 66-284 69-323 (1265)
311 COG0823 TolB Periplasmic compo 98.7 2E-06 4.4E-11 74.4 17.6 200 19-239 195-400 (425)
312 PF06977 SdiA-regulated: SdiA- 98.7 4.5E-05 9.8E-10 60.8 23.8 203 59-280 15-247 (248)
313 PF07433 DUF1513: Protein of u 98.6 1.7E-05 3.7E-10 64.2 20.0 204 122-345 6-247 (305)
314 KOG1275 PAB-dependent poly(A) 98.6 1.1E-06 2.4E-11 79.1 13.8 182 135-343 149-340 (1118)
315 TIGR03300 assembly_YfgL outer 98.6 8.5E-05 1.9E-09 64.4 25.5 223 76-345 104-338 (377)
316 PF08553 VID27: VID27 cytoplas 98.6 1E-05 2.2E-10 74.3 19.6 143 131-284 491-648 (794)
317 PF13360 PQQ_2: PQQ-like domai 98.6 2.8E-05 6.2E-10 62.7 20.5 209 90-345 2-230 (238)
318 KOG1275 PAB-dependent poly(A) 98.6 3.1E-06 6.7E-11 76.4 14.7 175 87-281 153-340 (1118)
319 KOG0882 Cyclophilin-related pe 98.5 1.1E-06 2.4E-11 73.0 11.0 208 62-287 6-235 (558)
320 PF11768 DUF3312: Protein of u 98.5 1.1E-05 2.3E-10 69.9 17.3 69 211-284 262-330 (545)
321 PF11768 DUF3312: Protein of u 98.5 1.1E-05 2.3E-10 69.9 16.9 116 121-240 206-330 (545)
322 PF00930 DPPIV_N: Dipeptidyl p 98.5 4.4E-05 9.6E-10 65.4 20.6 231 74-335 1-301 (353)
323 KOG2066 Vacuolar assembly/sort 98.5 1.2E-05 2.5E-10 71.8 16.9 143 120-284 39-188 (846)
324 PF04053 Coatomer_WDAD: Coatom 98.5 7.7E-05 1.7E-09 65.0 21.9 227 59-345 26-262 (443)
325 PF02897 Peptidase_S9_N: Proly 98.5 0.0004 8.6E-09 61.1 26.9 201 67-283 125-357 (414)
326 KOG0882 Cyclophilin-related pe 98.5 3.6E-06 7.9E-11 70.0 12.4 218 118-345 7-231 (558)
327 KOG1645 RING-finger-containing 98.5 8.6E-06 1.9E-10 66.9 14.3 156 109-273 182-351 (463)
328 PRK02888 nitrous-oxide reducta 98.5 2.1E-05 4.6E-10 69.7 17.5 172 90-284 214-405 (635)
329 KOG2066 Vacuolar assembly/sort 98.4 2.5E-05 5.5E-10 69.8 16.9 174 28-240 49-234 (846)
330 PF06977 SdiA-regulated: SdiA- 98.4 0.00026 5.6E-09 56.6 20.9 200 115-342 16-247 (248)
331 KOG1832 HIV-1 Vpr-binding prot 98.4 6.1E-07 1.3E-11 80.6 6.3 193 110-344 1091-1290(1516)
332 PF13360 PQQ_2: PQQ-like domai 98.4 0.00023 5E-09 57.3 20.8 182 76-284 35-231 (238)
333 PRK11138 outer membrane biogen 98.4 0.00047 1E-08 60.2 23.4 180 136-344 208-393 (394)
334 COG3386 Gluconolactonase [Carb 98.3 0.00061 1.3E-08 56.5 22.5 227 70-336 29-277 (307)
335 KOG1920 IkappaB kinase complex 98.3 0.00013 2.8E-09 68.4 19.8 198 120-345 68-322 (1265)
336 COG3391 Uncharacterized conser 98.3 0.0012 2.6E-08 57.2 24.6 238 67-343 32-281 (381)
337 PF14583 Pectate_lyase22: Olig 98.3 0.0016 3.6E-08 54.8 24.7 284 24-345 43-381 (386)
338 KOG3617 WD40 and TPR repeat-co 98.3 0.00016 3.6E-09 65.4 18.2 111 22-151 21-131 (1416)
339 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0011 2.3E-08 57.9 23.2 168 92-284 62-247 (410)
340 PRK02888 nitrous-oxide reducta 98.2 7.1E-05 1.5E-09 66.5 14.5 198 127-345 199-404 (635)
341 KOG2114 Vacuolar assembly/sort 98.2 0.00068 1.5E-08 61.6 20.5 215 24-256 31-260 (933)
342 PF08553 VID27: VID27 cytoplas 98.2 4.1E-05 8.9E-10 70.4 13.0 134 188-344 502-646 (794)
343 PF04053 Coatomer_WDAD: Coatom 98.1 0.00089 1.9E-08 58.5 19.1 144 118-284 30-174 (443)
344 PF03178 CPSF_A: CPSF A subuni 98.1 0.003 6.5E-08 53.5 21.6 189 28-236 42-262 (321)
345 COG3391 Uncharacterized conser 98.0 0.0062 1.3E-07 52.8 22.8 196 122-344 32-238 (381)
346 PF08596 Lgl_C: Lethal giant l 98.0 0.0025 5.5E-08 54.9 19.8 242 19-284 4-291 (395)
347 PF06433 Me-amine-dh_H: Methyl 98.0 0.0038 8.2E-08 51.7 19.7 198 70-284 99-321 (342)
348 KOG3617 WD40 and TPR repeat-co 98.0 2.1E-05 4.6E-10 70.8 7.0 108 173-284 20-132 (1416)
349 PF02897 Peptidase_S9_N: Proly 97.9 0.0076 1.7E-07 53.0 22.0 197 123-345 126-357 (414)
350 COG3204 Uncharacterized protei 97.9 0.005 1.1E-07 49.3 18.3 164 61-239 81-263 (316)
351 KOG2395 Protein involved in va 97.9 0.00016 3.5E-09 62.0 10.7 141 180-343 345-498 (644)
352 KOG2444 WD40 repeat protein [G 97.8 2.9E-05 6.3E-10 59.3 4.7 141 183-345 33-177 (238)
353 PF06433 Me-amine-dh_H: Methyl 97.8 0.014 3E-07 48.5 26.2 274 28-345 2-320 (342)
354 PRK11138 outer membrane biogen 97.8 0.006 1.3E-07 53.3 19.2 183 77-284 120-313 (394)
355 COG3204 Uncharacterized protei 97.8 0.0048 1E-07 49.5 16.3 170 165-345 82-263 (316)
356 PF03178 CPSF_A: CPSF A subuni 97.8 0.0094 2E-07 50.4 19.7 135 143-284 62-203 (321)
357 KOG4640 Anaphase-promoting com 97.8 0.00015 3.3E-09 63.3 8.6 91 170-262 22-115 (665)
358 smart00320 WD40 WD40 repeats. 97.8 8.6E-05 1.9E-09 40.0 4.9 37 244-281 4-40 (40)
359 KOG4640 Anaphase-promoting com 97.7 0.00021 4.5E-09 62.5 9.0 70 211-284 23-93 (665)
360 KOG3621 WD40 repeat-containing 97.7 0.00037 7.9E-09 61.8 10.5 113 170-284 35-155 (726)
361 smart00320 WD40 WD40 repeats. 97.7 7.2E-05 1.6E-09 40.3 4.2 38 305-343 3-40 (40)
362 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0058 1.2E-07 41.6 13.5 99 215-341 9-110 (111)
363 PF15390 DUF4613: Domain of un 97.7 0.0018 3.8E-08 56.8 13.8 150 120-283 19-186 (671)
364 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.003 6.6E-08 49.5 13.7 113 128-249 18-132 (354)
365 KOG3621 WD40 repeat-containing 97.6 0.00049 1.1E-08 61.0 10.0 118 211-345 36-154 (726)
366 PRK13616 lipoprotein LpqB; Pro 97.6 0.011 2.4E-07 53.9 18.5 188 66-277 350-562 (591)
367 PF00780 CNH: CNH domain; Int 97.6 0.034 7.4E-07 45.9 25.0 227 25-284 4-256 (275)
368 KOG2395 Protein involved in va 97.5 0.0077 1.7E-07 52.1 15.4 145 128-284 341-501 (644)
369 PRK10115 protease 2; Provision 97.5 0.081 1.8E-06 49.7 27.8 200 66-283 127-344 (686)
370 PF15390 DUF4613: Domain of un 97.5 0.0062 1.4E-07 53.5 14.1 149 169-343 20-184 (671)
371 PF05694 SBP56: 56kDa selenium 97.5 0.057 1.2E-06 46.3 19.5 205 136-345 90-342 (461)
372 PF14583 Pectate_lyase22: Olig 97.5 0.012 2.7E-07 49.7 15.3 166 59-239 181-381 (386)
373 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.012 2.5E-07 40.2 12.1 101 123-234 2-109 (111)
374 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.015 3.1E-07 45.9 13.8 100 181-284 24-124 (354)
375 PRK13616 lipoprotein LpqB; Pro 97.4 0.01 2.2E-07 54.2 15.0 101 170-279 351-472 (591)
376 COG3490 Uncharacterized protei 97.4 0.052 1.1E-06 43.5 21.1 203 59-283 113-348 (366)
377 COG3490 Uncharacterized protei 97.3 0.06 1.3E-06 43.2 23.1 225 39-284 44-311 (366)
378 COG3386 Gluconolactonase [Carb 97.3 0.041 8.9E-07 45.8 16.5 145 126-283 30-193 (307)
379 PF04841 Vps16_N: Vps16, N-ter 97.3 0.11 2.4E-06 45.5 27.3 197 50-264 67-271 (410)
380 PF10647 Gmad1: Lipoprotein Lp 97.3 0.058 1.3E-06 43.8 17.1 150 170-334 25-184 (253)
381 PF05694 SBP56: 56kDa selenium 97.2 0.11 2.4E-06 44.7 24.1 232 41-284 36-343 (461)
382 PF07995 GSDH: Glucose / Sorbo 97.2 0.11 2.3E-06 44.2 25.0 242 67-340 3-330 (331)
383 PF14870 PSII_BNR: Photosynthe 97.0 0.14 3.1E-06 42.4 26.7 190 123-342 106-301 (302)
384 KOG2444 WD40 repeat protein [G 97.0 0.0022 4.8E-08 49.3 6.0 140 135-284 32-178 (238)
385 KOG2079 Vacuolar assembly/sort 96.9 0.003 6.4E-08 59.1 6.9 99 223-344 101-202 (1206)
386 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0057 1.2E-07 34.7 5.2 30 315-345 12-41 (47)
387 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0056 1.2E-07 34.7 5.1 31 252-283 11-41 (47)
388 PF08596 Lgl_C: Lethal giant l 96.8 0.03 6.6E-07 48.4 11.8 146 170-344 3-172 (395)
389 KOG2247 WD40 repeat-containing 96.7 0.0002 4.2E-09 61.0 -1.9 144 171-339 37-182 (615)
390 KOG4499 Ca2+-binding protein R 96.7 0.22 4.7E-06 38.9 16.0 142 66-218 109-263 (310)
391 PF05096 Glu_cyclase_2: Glutam 96.6 0.27 5.9E-06 39.6 17.8 127 89-229 108-251 (264)
392 KOG2079 Vacuolar assembly/sort 96.6 0.012 2.5E-07 55.4 8.5 98 180-282 99-202 (1206)
393 KOG4441 Proteins containing BT 96.6 0.23 5E-06 45.6 16.7 207 91-338 301-534 (571)
394 KOG4499 Ca2+-binding protein R 96.5 0.27 5.8E-06 38.4 17.2 144 169-334 109-274 (310)
395 cd00216 PQQ_DH Dehydrogenases 96.4 0.72 1.6E-05 41.7 20.7 105 142-247 174-326 (488)
396 cd00216 PQQ_DH Dehydrogenases 96.4 0.75 1.6E-05 41.5 26.8 133 144-284 257-425 (488)
397 PF00780 CNH: CNH domain; Int 96.2 0.56 1.2E-05 38.7 23.9 144 76-240 6-166 (275)
398 PF05096 Glu_cyclase_2: Glutam 96.1 0.55 1.2E-05 37.9 20.4 183 67-273 46-251 (264)
399 KOG3630 Nuclear pore complex, 96.0 0.064 1.4E-06 51.1 9.7 113 170-284 102-229 (1405)
400 PHA02713 hypothetical protein; 95.9 0.54 1.2E-05 43.2 15.2 182 134-345 305-533 (557)
401 PHA02713 hypothetical protein; 95.9 1.1 2.5E-05 41.1 17.3 89 191-284 433-534 (557)
402 COG5167 VID27 Protein involved 95.8 0.23 5E-06 43.4 11.5 142 179-344 478-631 (776)
403 PRK10115 protease 2; Provision 95.8 1.9 4E-05 40.9 27.7 246 19-284 129-395 (686)
404 PF12234 Rav1p_C: RAVE protein 95.7 0.5 1.1E-05 43.3 13.8 117 211-343 32-154 (631)
405 KOG2377 Uncharacterized conser 95.6 1.3 2.9E-05 38.3 18.3 155 69-239 26-185 (657)
406 TIGR02604 Piru_Ver_Nterm putat 95.5 0.76 1.7E-05 39.8 14.1 143 121-274 14-204 (367)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 95.4 1.6 3.6E-05 38.1 25.1 43 253-315 308-350 (415)
408 PF12234 Rav1p_C: RAVE protein 95.4 0.63 1.4E-05 42.7 13.6 105 176-284 37-157 (631)
409 COG3823 Glutamine cyclotransfe 95.4 0.87 1.9E-05 35.1 12.1 163 91-272 68-248 (262)
410 KOG2280 Vacuolar assembly/sort 95.4 2.3 4.9E-05 39.4 19.4 177 90-284 63-247 (829)
411 TIGR02604 Piru_Ver_Nterm putat 95.3 1.7 3.8E-05 37.6 15.6 151 67-228 15-202 (367)
412 KOG4460 Nuclear pore complex, 95.1 0.4 8.6E-06 42.1 10.7 91 254-346 105-199 (741)
413 PF10647 Gmad1: Lipoprotein Lp 94.9 1.7 3.6E-05 35.4 22.2 145 122-275 25-187 (253)
414 PF10313 DUF2415: Uncharacteri 94.9 0.16 3.4E-06 28.0 5.2 32 121-152 1-34 (43)
415 KOG3630 Nuclear pore complex, 94.8 0.22 4.8E-06 47.7 9.0 151 66-225 101-260 (1405)
416 PF10313 DUF2415: Uncharacteri 94.7 0.14 3.1E-06 28.2 4.7 32 253-284 1-34 (43)
417 PF10168 Nup88: Nuclear pore c 94.7 1.7 3.7E-05 41.0 14.6 90 253-345 85-179 (717)
418 PF10168 Nup88: Nuclear pore c 94.6 4.2 9.1E-05 38.5 21.9 80 120-201 84-182 (717)
419 PHA03098 kelch-like protein; P 94.5 2.7 5.8E-05 38.6 15.7 60 179-240 342-415 (534)
420 PF08728 CRT10: CRT10; InterP 94.4 4.4 9.4E-05 38.0 16.5 116 211-344 103-245 (717)
421 KOG2377 Uncharacterized conser 94.3 1.4 3.1E-05 38.2 12.0 136 125-268 27-168 (657)
422 PF07995 GSDH: Glucose / Sorbo 94.2 3.2 6.9E-05 35.4 15.9 55 122-179 3-59 (331)
423 COG5167 VID27 Protein involved 94.0 4.2 9.1E-05 36.0 15.8 150 74-239 475-632 (776)
424 PF12657 TFIIIC_delta: Transcr 93.9 1.1 2.3E-05 34.1 9.9 29 316-344 87-120 (173)
425 PRK13684 Ycf48-like protein; P 93.8 3.7 8.1E-05 35.0 16.1 150 120-282 172-330 (334)
426 PF08728 CRT10: CRT10; InterP 93.8 5.9 0.00013 37.1 17.0 112 170-282 102-245 (717)
427 KOG2247 WD40 repeat-containing 93.8 0.021 4.6E-07 49.2 0.5 145 68-235 37-184 (615)
428 PF07676 PD40: WD40-like Beta 93.5 0.3 6.6E-06 26.2 4.7 31 118-148 6-38 (39)
429 KOG1900 Nuclear pore complex, 93.2 2.4 5.2E-05 41.8 12.6 163 111-284 70-273 (1311)
430 PF07569 Hira: TUP1-like enhan 93.0 0.88 1.9E-05 36.0 8.4 74 260-345 18-95 (219)
431 PHA03098 kelch-like protein; P 93.0 7.2 0.00016 35.8 15.5 139 134-284 344-512 (534)
432 PF14761 HPS3_N: Hermansky-Pud 92.8 3.7 8.1E-05 32.0 13.5 116 223-344 31-162 (215)
433 PF07569 Hira: TUP1-like enhan 92.7 0.79 1.7E-05 36.3 7.7 61 177-239 19-95 (219)
434 KOG4460 Nuclear pore complex, 92.5 3.8 8.3E-05 36.4 11.9 74 211-285 106-200 (741)
435 KOG1897 Damage-specific DNA bi 92.3 11 0.00024 36.3 25.3 177 136-341 686-894 (1096)
436 TIGR02276 beta_rpt_yvtn 40-res 92.1 0.62 1.4E-05 25.3 4.8 39 178-216 1-41 (42)
437 PF14781 BBS2_N: Ciliary BBSom 91.8 3.5 7.6E-05 29.4 12.0 107 174-284 4-126 (136)
438 KOG1916 Nuclear protein, conta 91.8 0.27 5.8E-06 46.0 4.6 135 140-284 108-266 (1283)
439 PF07676 PD40: WD40-like Beta 91.6 0.69 1.5E-05 24.8 4.5 28 315-342 9-38 (39)
440 PF02333 Phytase: Phytase; In 91.5 8.4 0.00018 33.2 19.6 126 121-248 156-299 (381)
441 COG4590 ABC-type uncharacteriz 91.5 2.4 5.2E-05 36.9 9.5 153 168-345 220-386 (733)
442 PF12657 TFIIIC_delta: Transcr 91.5 1.6 3.5E-05 33.1 8.0 31 254-284 87-122 (173)
443 PF03022 MRJP: Major royal jel 91.5 6.1 0.00013 32.9 11.9 147 191-346 35-216 (287)
444 KOG4441 Proteins containing BT 91.2 13 0.00027 34.6 17.5 141 135-284 383-547 (571)
445 PF13449 Phytase-like: Esteras 91.2 8.6 0.00019 32.7 21.4 214 120-337 19-310 (326)
446 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.1 12 0.00026 34.3 23.1 51 191-241 272-335 (527)
447 PF14781 BBS2_N: Ciliary BBSom 91.0 4.3 9.4E-05 29.0 11.5 69 213-284 3-82 (136)
448 PF14655 RAB3GAP2_N: Rab3 GTPa 91.0 5.3 0.00012 35.0 11.4 83 59-154 301-401 (415)
449 TIGR03118 PEPCTERM_chp_1 conse 90.9 8.3 0.00018 31.9 23.8 207 67-284 24-280 (336)
450 PF08801 Nucleoporin_N: Nup133 90.8 9.4 0.0002 33.8 13.2 31 253-284 190-220 (422)
451 PHA02790 Kelch-like protein; P 90.6 10 0.00022 34.3 13.4 59 179-240 318-385 (480)
452 TIGR03118 PEPCTERM_chp_1 conse 89.3 11 0.00025 31.2 19.3 200 122-345 24-279 (336)
453 PF11635 Med16: Mediator compl 88.8 23 0.00051 34.1 20.1 84 253-340 260-345 (753)
454 KOG1916 Nuclear protein, conta 88.7 0.37 8.1E-06 45.2 2.8 132 189-344 110-264 (1283)
455 PF02333 Phytase: Phytase; In 88.3 16 0.00035 31.6 20.9 191 135-345 70-290 (381)
456 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.3 21 0.00044 32.8 26.3 60 144-203 272-338 (527)
457 COG1770 PtrB Protease II [Amin 88.2 22 0.00047 33.0 22.6 203 67-285 130-350 (682)
458 PF14727 PHTB1_N: PTHB1 N-term 88.1 18 0.00038 31.9 30.1 155 27-197 36-203 (418)
459 PF10395 Utp8: Utp8 family; I 87.9 23 0.00051 33.0 22.6 195 72-284 34-260 (670)
460 PF11715 Nup160: Nucleoporin N 87.8 4 8.7E-05 37.6 9.0 37 170-206 216-256 (547)
461 PF07250 Glyoxal_oxid_N: Glyox 87.6 12 0.00026 30.1 10.4 131 145-284 48-198 (243)
462 PF14870 PSII_BNR: Photosynthe 87.5 16 0.00034 30.7 26.6 188 122-339 63-255 (302)
463 TIGR02276 beta_rpt_yvtn 40-res 87.4 3.1 6.8E-05 22.4 5.3 32 218-250 1-32 (42)
464 COG4590 ABC-type uncharacteriz 86.9 2.4 5.2E-05 36.9 6.3 165 111-284 211-387 (733)
465 KOG1900 Nuclear pore complex, 86.6 31 0.00067 34.7 13.9 152 39-199 96-273 (1311)
466 PF14727 PHTB1_N: PTHB1 N-term 86.3 23 0.00049 31.3 20.2 149 130-284 34-205 (418)
467 TIGR03606 non_repeat_PQQ dehyd 86.1 25 0.00053 31.5 18.9 113 64-188 28-165 (454)
468 PF11715 Nup160: Nucleoporin N 85.4 4.5 9.7E-05 37.3 8.0 32 254-286 216-251 (547)
469 PF03088 Str_synth: Strictosid 84.9 8.9 0.00019 25.3 7.5 47 188-234 35-82 (89)
470 COG5290 IkappaB kinase complex 84.8 37 0.00081 32.3 14.0 96 172-270 250-354 (1243)
471 PF10433 MMS1_N: Mono-function 84.5 32 0.0007 31.4 23.6 234 24-284 218-477 (504)
472 COG3823 Glutamine cyclotransfe 84.1 18 0.00039 28.2 13.6 99 134-240 57-159 (262)
473 PF14761 HPS3_N: Hermansky-Pud 84.1 18 0.0004 28.3 15.5 101 181-284 29-164 (215)
474 PF13449 Phytase-like: Esteras 84.1 25 0.00055 29.9 21.0 101 123-226 87-231 (326)
475 PF03022 MRJP: Major royal jel 83.9 24 0.00051 29.4 17.2 174 144-332 35-252 (287)
476 PLN00033 photosystem II stabil 83.7 30 0.00065 30.4 16.3 152 120-280 238-396 (398)
477 COG5290 IkappaB kinase complex 82.2 48 0.001 31.7 18.0 30 168-197 112-141 (1243)
478 KOG2280 Vacuolar assembly/sort 82.2 46 0.00099 31.5 14.1 52 169-220 217-271 (829)
479 KOG0985 Vesicle coat protein c 81.8 19 0.00041 35.3 10.1 231 25-284 30-288 (1666)
480 PF10214 Rrn6: RNA polymerase 80.3 60 0.0013 31.6 26.7 171 63-240 77-277 (765)
481 PF03088 Str_synth: Strictosid 79.6 15 0.00032 24.3 6.9 54 271-344 33-86 (89)
482 KOG1897 Damage-specific DNA bi 79.5 66 0.0014 31.6 28.0 106 177-284 496-614 (1096)
483 PRK13613 lipoprotein LpqB; Pro 78.9 57 0.0012 30.5 14.0 146 170-333 364-524 (599)
484 KOG1896 mRNA cleavage and poly 78.0 81 0.0018 31.8 14.3 140 91-239 1065-1213(1366)
485 KOG1520 Predicted alkaloid syn 77.7 45 0.00098 28.7 14.2 98 170-271 116-236 (376)
486 PF12768 Rax2: Cortical protei 77.7 40 0.00086 28.0 12.0 92 190-284 16-124 (281)
487 TIGR03606 non_repeat_PQQ dehyd 77.2 54 0.0012 29.4 14.3 107 120-229 29-165 (454)
488 PF11635 Med16: Mediator compl 77.2 74 0.0016 30.9 20.7 194 39-234 69-345 (753)
489 PF01731 Arylesterase: Arylest 76.7 13 0.00028 24.4 5.6 30 317-346 56-85 (86)
490 PF01731 Arylesterase: Arylest 76.3 16 0.00035 23.9 5.9 48 190-240 36-85 (86)
491 KOG3616 Selective LIM binding 74.4 62 0.0013 30.7 10.9 187 68-277 17-238 (1636)
492 PLN02193 nitrile-specifier pro 73.7 70 0.0015 28.9 14.6 193 132-346 175-411 (470)
493 PF12768 Rax2: Cortical protei 73.6 51 0.0011 27.4 9.9 51 231-284 16-73 (281)
494 PRK13684 Ycf48-like protein; P 73.4 58 0.0013 27.9 27.3 149 170-343 174-329 (334)
495 PHA02790 Kelch-like protein; P 73.3 73 0.0016 28.9 13.6 137 131-284 318-471 (480)
496 PF01436 NHL: NHL repeat; Int 73.1 9.4 0.0002 18.6 3.7 23 212-235 5-27 (28)
497 TIGR03548 mutarot_permut cycli 73.1 57 0.0012 27.6 17.1 101 179-284 72-195 (323)
498 smart00564 PQQ beta-propeller 72.3 7.4 0.00016 19.6 3.1 24 182-205 8-31 (33)
499 TIGR02171 Fb_sc_TIGR02171 Fibr 71.9 44 0.00096 32.5 9.8 80 189-268 328-414 (912)
500 TIGR02171 Fb_sc_TIGR02171 Fibr 71.4 42 0.00092 32.6 9.5 54 229-284 327-386 (912)
No 1
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=100.00 E-value=1.4e-46 Score=285.44 Aligned_cols=340 Identities=54% Similarity=0.916 Sum_probs=283.9
Q ss_pred CCcceeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEE
Q 019059 3 GGSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFS 82 (346)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 82 (346)
|++.+++|||++++|+++....+.+..+|++|+.+++.+|+|.++++++++..+..+.++.|.++|+.++-+|..+.+++
T Consensus 1 ~~s~~liyGle~qAR~lT~qtad~d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ila 80 (370)
T KOG1007|consen 1 GDSSGLIYGLEYQARCLTPQTADRDHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILA 80 (370)
T ss_pred CCcccceeeeeeeeeecCccccCccceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCc----ceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC-C
Q 019059 83 TVFSTGES----YGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-N 156 (346)
Q Consensus 83 ~~~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-~ 156 (346)
+++..-.| ..+.||.++++.+.....+.+.+..+. .+-+.|.|+.|.|++.. +++-.|..|.+|+++.+.. .
T Consensus 81 T~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k--lasm~dn~i~l~~l~ess~~v 158 (370)
T KOG1007|consen 81 TVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK--LASMDDNNIVLWSLDESSKIV 158 (370)
T ss_pred EEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe--eEEeccCceEEEEcccCcchh
Confidence 98763333 357899999887776666777777776 56679999999998884 5555699999999998765 3
Q ss_pred ceeeecccCCCceeeEEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCe
Q 019059 157 AQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESG 232 (346)
Q Consensus 157 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~ 232 (346)
..+......++....++-+|+| .....+.+..|+++..||+|+..+...+..+| +..+.|+|+..++|+++++||.
T Consensus 159 aev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy 238 (370)
T KOG1007|consen 159 AEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY 238 (370)
T ss_pred eeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence 3444444445667888999999 33345555679999999999999998888777 9999999999999999999999
Q ss_pred EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC-------CcccccCCcc---cc
Q 019059 233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL-------PSESLVESPN---QR 302 (346)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~---~~ 302 (346)
|++||.|+.+.|+.++.+|..+|.+|.|+|...++|.+|+.|..|.+|....-..+.. .......+.. ..
T Consensus 239 vriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL 318 (370)
T KOG1007|consen 239 VRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL 318 (370)
T ss_pred EEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence 9999999999999999999999999999999889999999999999998876542211 0000011111 12
Q ss_pred ccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
....+.++..|...|++++|+.-.++++|+-+.||++.|=.+
T Consensus 319 ~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 319 QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 344567888999999999999999999999999999988654
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-47 Score=303.81 Aligned_cols=280 Identities=21% Similarity=0.339 Sum_probs=251.3
Q ss_pred eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCC--CCceEEEEeecCCcce
Q 019059 15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGESYG 92 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~~~~~d~~ 92 (346)
..|++..+.++.++..++.|+. .|.+.+|.....+ ....+.+|.+.|.++.|+|. +..++++ +.||+
T Consensus 174 d~rPis~~~fS~ds~~laT~sw----sG~~kvW~~~~~~---~~~~l~gH~~~v~~~~fhP~~~~~~lat~----s~Dgt 242 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSW----SGLVKVWSVPQCN---LLQTLRGHTSRVGAAVFHPVDSDLNLATA----SADGT 242 (459)
T ss_pred CCCcceeeEeecCCCeEEEeec----CCceeEeecCCcc---eeEEEeccccceeeEEEccCCCccceeee----ccCCc
Confidence 4688999999999999999864 5788999888762 34678899999999999997 3456554 79999
Q ss_pred EEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059 93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS 172 (346)
Q Consensus 93 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 172 (346)
+++|+++ ...++..+.+|...|..++|+|+|++ +.+++.|.+-++||++++.... ...+|...|.
T Consensus 243 vklw~~~---------~e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL-----~QEGHs~~v~ 307 (459)
T KOG0272|consen 243 VKLWKLS---------QETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELL-----LQEGHSKGVF 307 (459)
T ss_pred eeeeccC---------CCcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhH-----hhcccccccc
Confidence 9999998 56889999999999999999999995 6777899999999999765332 2357888999
Q ss_pred EEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059 173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (346)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (346)
+++|+|||..+++|+.|..-+|||+++++++..+. +| |.+|+|+|+|- .++||+.|++++|||+|. ...+.++.
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~-r~~ly~ip 384 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRM-RSELYTIP 384 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECCCce-EEeecCCCCcEEEeeecc-cccceecc
Confidence 99999999999999999999999999999999887 68 99999999996 999999999999999998 66799999
Q ss_pred CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcE
Q 019059 250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329 (346)
Q Consensus 250 ~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 329 (346)
+|.+-|+.|+|+|....+|+|++.|++++||..++ +.+++++.||.+.|.+++.+|++. .
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-------------------~~~~ksLaGHe~kV~s~Dis~d~~-~ 444 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-------------------WSPLKSLAGHEGKVISLDISPDSQ-A 444 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCC-------------------cccchhhcCCccceEEEEeccCCc-e
Confidence 99999999999995549999999999999999998 999999999999999999999998 8
Q ss_pred EEEeecCCeEEEee
Q 019059 330 FASLSYDGRVRNHM 343 (346)
Q Consensus 330 l~s~~~d~~v~vw~ 343 (346)
+++++.|+++++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-44 Score=284.32 Aligned_cols=286 Identities=20% Similarity=0.300 Sum_probs=243.0
Q ss_pred ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (346)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~ 91 (346)
+..+..++-++.++|++.+++.|. .+..+++|++..+.+. .+..+|...|.|++|+||++.|+++ +.||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGs----GD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk~iASG----~~dg 179 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGS----GDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGKKIASG----SKDG 179 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecC----CCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcchhhcc----ccCC
Confidence 344455667778888888998873 6788999998887543 4556899999999999999999984 6999
Q ss_pred eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeec-----CCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS-----SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (346)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 166 (346)
.|++||... ..+.-..+.+|...|++++|.| ..+ .+++++.||.|+|||+..+... ....+
T Consensus 180 ~I~lwdpkt--------g~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~-----~~lsg 245 (480)
T KOG0271|consen 180 SIRLWDPKT--------GQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCV-----RTLSG 245 (480)
T ss_pred eEEEecCCC--------CCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEE-----EEecc
Confidence 999999762 2345567899999999999975 344 4667788999999999854422 22357
Q ss_pred CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeC-----------CCCC-----------
Q 019059 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD-----------TKKK----------- 221 (346)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~-----------~~~~----------- 221 (346)
|..+|+++.|--+ .++++++.|++|++|+...|.+.+.+. +| |+.++.+ |.+.
T Consensus 246 HT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 246 HTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred CccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 8899999999753 578899999999999999999988887 55 8888877 2222
Q ss_pred -------------cEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059 222 -------------HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288 (346)
Q Consensus 222 -------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 288 (346)
..+++|++|.++.+|+....++++..+.+|..-|+.+.||||+ +++|++|.|.+|++||.++
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~t---- 398 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRT---- 398 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCC----
Confidence 2599999999999999988788999999999999999999999 9999999999999999999
Q ss_pred CCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++.+.++.+|-.+|+.++|+.|.+ +|++||.|.++++|++.
T Consensus 399 ---------------Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 399 ---------------GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVR 439 (480)
T ss_pred ---------------cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEee
Confidence 999999999999999999999986 99999999999999985
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-44 Score=282.63 Aligned_cols=285 Identities=19% Similarity=0.306 Sum_probs=243.3
Q ss_pred eecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecC-----CCCceEEE
Q 019059 9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP-----FDQRIFST 83 (346)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~~~ 83 (346)
++.++.+..|+.++.++|++.+++.|. .+|.|.+|+ +......-+.+.+|...|++++|.| ..++|++
T Consensus 150 ~~t~KgH~~WVlcvawsPDgk~iASG~----~dg~I~lwd--pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las- 222 (480)
T KOG0271|consen 150 LFTCKGHKNWVLCVAWSPDGKKIASGS----KDGSIRLWD--PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS- 222 (480)
T ss_pred ceeecCCccEEEEEEECCCcchhhccc----cCCeEEEec--CCCCCcccccccCcccceeEEeecccccCCCccceec-
Confidence 455666778999999999999999885 689999995 3344456688999999999999976 3455555
Q ss_pred EeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc
Q 019059 84 VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ 163 (346)
Q Consensus 84 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 163 (346)
++.||.++|||+. .+.++..+.+|+.+|+|++|--+| ++++++.|++|++|+...+.....+
T Consensus 223 ---~skDg~vrIWd~~---------~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~l---- 284 (480)
T KOG0271|consen 223 ---SSKDGSVRIWDTK---------LGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCREL---- 284 (480)
T ss_pred ---ccCCCCEEEEEcc---------CceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhh----
Confidence 4899999999998 678999999999999999997555 4888899999999999876543333
Q ss_pred cCCCceeeEEEEeC-----------CCCC-------------------------cEEEEecCCeEEEEEccCCC-cccee
Q 019059 164 SSGMLHYLSGGAWD-----------PHDV-------------------------NAVAATCESSVQFWDLRSMG-KTNSI 206 (346)
Q Consensus 164 ~~~~~~~v~~~~~~-----------~~~~-------------------------~l~~~~~d~~i~i~d~~~~~-~~~~~ 206 (346)
.+|...|+.++.+ |.++ .+++++.|.++.+|+....+ ++..+
T Consensus 285 -kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm 363 (480)
T KOG0271|consen 285 -KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM 363 (480)
T ss_pred -cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh
Confidence 4566677777655 3333 49999999999999987655 44444
Q ss_pred eccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059 207 EHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS 283 (346)
Q Consensus 207 ~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~ 283 (346)
. +| |+.+.|+||+. ++++++.|+.|++||.++ ++.+.+|++|-..|+.++|+.|. ++|++||.|.++++||++
T Consensus 364 t-gHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 364 T-GHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred h-chhhheeeEEECCCcc-EEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEee
Confidence 4 67 99999999999 999999999999999998 66899999999999999999999 999999999999999999
Q ss_pred CCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
+ .++...+.+|...|.+++|+|||. .+++|+.|+.+++|.
T Consensus 440 t-------------------kKl~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 440 T-------------------KKLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred e-------------------eeecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 9 889999999999999999999998 899999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-44 Score=286.62 Aligned_cols=243 Identities=20% Similarity=0.299 Sum_probs=218.9
Q ss_pred eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCC-CCcEEEEe
Q 019059 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG-RHDKLVSI 140 (346)
Q Consensus 62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 140 (346)
.+-..+|..+.|++++..++++ +-+|.++||+.+ +...+.++.+|.+.|.++.|+|.. ...+++++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~----swsG~~kvW~~~---------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s 238 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATG----SWSGLVKVWSVP---------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS 238 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEe----ecCCceeEeecC---------CcceeEEEeccccceeeEEEccCCCccceeeec
Confidence 3556899999999999998885 799999999998 788999999999999999999983 43477778
Q ss_pred cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeC
Q 019059 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD 217 (346)
Q Consensus 141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~ 217 (346)
.||++++|++.+.... ....+|...|..++|+|+|++|.+++.|.+-++||+++++.+.... +| |.+++|+
T Consensus 239 ~Dgtvklw~~~~e~~l-----~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~ 312 (459)
T KOG0272|consen 239 ADGTVKLWKLSQETPL-----QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQ 312 (459)
T ss_pred cCCceeeeccCCCcch-----hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEec
Confidence 9999999999865433 3345678899999999999999999999999999999998877655 77 9999999
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (346)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 297 (346)
|+|. ++++|+.|..-+|||+|+ ..++..+.+|..+|.+|.|+|+| ..|||||.|++++|||++.
T Consensus 313 ~DGS-L~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~------------- 376 (459)
T KOG0272|consen 313 PDGS-LAATGGLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRM------------- 376 (459)
T ss_pred CCCc-eeeccCccchhheeeccc-CcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecc-------------
Confidence 9999 999999999999999998 66899999999999999999999 9999999999999999998
Q ss_pred CccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
..++.++.+|..-|+.|.|+|....+|++++.|++++||.-+
T Consensus 377 ------r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 377 ------RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ------cccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 788999999999999999999666699999999999999754
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.5e-40 Score=250.31 Aligned_cols=287 Identities=16% Similarity=0.227 Sum_probs=244.6
Q ss_pred ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (346)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~ 91 (346)
|+.+...|.++.+.++..+++.+ +.++.+.+|+....++.-.+. -....|..++|+|.++.+++ ||-|.
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSa----SqDGklIvWDs~TtnK~haip---l~s~WVMtCA~sPSg~~VAc----GGLdN 119 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSA----SQDGKLIVWDSFTTNKVHAIP---LPSSWVMTCAYSPSGNFVAC----GGLDN 119 (343)
T ss_pred ecccccceeeeEecCCcCeEEee----ccCCeEEEEEcccccceeEEe---cCceeEEEEEECCCCCeEEe----cCcCc
Confidence 34445567888899999888876 478999999988876543332 24578999999999988777 58999
Q ss_pred eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (346)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 171 (346)
...||++..+.. ....+..+.+.+|++-+.|+.|-+|+. +++++.|.+..+||++++++...+ .+|...|
T Consensus 120 ~Csiy~ls~~d~---~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f-----~GH~gDV 189 (343)
T KOG0286|consen 120 KCSIYPLSTRDA---EGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVF-----HGHTGDV 189 (343)
T ss_pred eeEEEecccccc---cccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEe-----cCCcccE
Confidence 999999984321 123356677899999999999999776 888888999999999987754433 4688899
Q ss_pred EEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059 172 SGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247 (346)
Q Consensus 172 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 247 (346)
.++.++| +++.+++++.|+..++||+|.+.++.+|. +| |+++.|.|+|. -|++|++|++.++||+|. .+.+..
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRa-D~~~a~ 266 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGD-AFATGSDDATCRLYDLRA-DQELAV 266 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCC-eeeecCCCceeEEEeecC-CcEEee
Confidence 9999999 88999999999999999999999999998 67 99999999998 999999999999999997 555666
Q ss_pred ecC--CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059 248 LPG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 248 ~~~--~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (346)
+.. -..+|++++||..| ++|++|..|..+.+||.-. ++.+..+.+|...|+++..+||
T Consensus 267 ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk-------------------~e~vg~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 267 YSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLK-------------------GERVGVLAGHENRVSCLGVSPD 326 (343)
T ss_pred eccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccc-------------------cceEEEeeccCCeeEEEEECCC
Confidence 652 33689999999999 9999999999999999988 8999999999999999999999
Q ss_pred CCcEEEEeecCCeEEEee
Q 019059 326 EPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 326 ~~~~l~s~~~d~~v~vw~ 343 (346)
|- .+++||+|.++|||.
T Consensus 327 G~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 327 GM-AVATGSWDSTLRIWA 343 (343)
T ss_pred Cc-EEEecchhHheeecC
Confidence 97 999999999999995
No 7
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.4e-40 Score=265.06 Aligned_cols=310 Identities=21% Similarity=0.349 Sum_probs=247.9
Q ss_pred CcceEEEeecccC-CCCeEEEEEec--CC----------------------CCeEEEeeeeccccceEEeeecCCCCceE
Q 019059 27 DHTSFLTGTLSLK-EENEVHLLRLS--SG----------------------GTELICEGLFSHPNEIWDLSSCPFDQRIF 81 (346)
Q Consensus 27 ~~~~~~~g~~~~~-~~~~i~~~~~~--~~----------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 81 (346)
..+||+.|+.+.+ .++.+.+-++. .. ...+.....+.|.++|+.++..|+.+.++
T Consensus 61 ~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iV 140 (422)
T KOG0264|consen 61 SKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIV 140 (422)
T ss_pred eeEEEEEEeecCCCCccEEEEEeecCCCcccccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEE
Confidence 4579999999988 66777776532 10 11455566788999999999999999999
Q ss_pred EEEeecCCcceEEEEecCcccCCCC-CccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC--ce
Q 019059 82 STVFSTGESYGAAIWQIPELYGQLN-SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN--AQ 158 (346)
Q Consensus 82 ~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~--~~ 158 (346)
++ .+..+.|.|||..+...... .....+-.++.+|+..-++++|++.....+++++.|+.|++||+...... ..
T Consensus 141 At---~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~ 217 (422)
T KOG0264|consen 141 AT---KTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV 217 (422)
T ss_pred Ee---cCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc
Confidence 97 47778999999875422211 11445556888999888999999998877888899999999999865442 12
Q ss_pred eeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccC--CCccceeeccc---eeEEEeCCCCCcEEEEecCCCe
Q 019059 159 VQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRS--MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESG 232 (346)
Q Consensus 159 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~--~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~ 232 (346)
.......+|...|..++|++.... +.+++.|+.+.|||+|+ .++..... +| ++|++|+|.+.++||+|+.|++
T Consensus 218 ~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 218 DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEeCCCCCceEEeccCCCc
Confidence 222335678889999999996655 55667899999999995 33333333 55 9999999999999999999999
Q ss_pred EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc
Q 019059 233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD 312 (346)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (346)
|.+||+|+...++.++.+|...|.+|.|+|.....||+++.|+.+.|||+.....+.. .+... ....++++...|
T Consensus 297 V~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~-~eda~----dgppEllF~HgG 371 (422)
T KOG0264|consen 297 VALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS-PEDAE----DGPPELLFIHGG 371 (422)
T ss_pred EEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-hhhhc----cCCcceeEEecC
Confidence 9999999999999999999999999999999989999999999999999987433322 11111 123678899999
Q ss_pred ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 313 YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 313 ~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
|...|.++.|+|+.++.++++++|+.+.||.+.
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999999999999999999999999999999864
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.7e-40 Score=243.71 Aligned_cols=264 Identities=13% Similarity=0.259 Sum_probs=223.6
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
+.+..|++|+.... +...++....+.|+.+...|+++.|+++ ....|++||+.. ....++.++.+
T Consensus 17 ~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa-----~~qhvRlyD~~S-------~np~Pv~t~e~ 81 (311)
T KOG0315|consen 17 GYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAA-----GNQHVRLYDLNS-------NNPNPVATFEG 81 (311)
T ss_pred cCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhc-----cCCeeEEEEccC-------CCCCceeEEec
Confidence 56777877776654 3444444444899999999999999886 445899999982 34458899999
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (346)
|...|.++.|..+|+. ++++++||.++|||++.......+ .+..+|+++..+|+...|+++..+|.|++||+.
T Consensus 82 h~kNVtaVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred cCCceEEEEEeecCeE-EEecCCCceEEEEeccCcccchhc------cCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 9999999999999996 888899999999999964332222 245699999999999999999999999999999
Q ss_pred CCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-----cceeeecCCCcceEEEEeCCCCCcEEEE
Q 019059 199 SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-----APIQELPGHTHWTWAVCCNPEYDGFILS 270 (346)
Q Consensus 199 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~v~~~~~~~~~l~s 270 (346)
+..+...+.++. |.++...|+|. +++.+...|..++|++-... .|+..++.|+.-+..+.+||++ ++||+
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat 232 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLAT 232 (311)
T ss_pred CCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEEe
Confidence 988877766444 99999999998 88888899999999986521 3778889999999999999999 99999
Q ss_pred ecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+|.|.+++||+... ..+.-..+.+|..++++.+||.++. +|++++.|+.+++|+++
T Consensus 233 ~ssdktv~iwn~~~------------------~~kle~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDD------------------FFKLELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLS 288 (311)
T ss_pred ecCCceEEEEecCC------------------ceeeEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccc
Confidence 99999999999997 1366677889999999999999997 99999999999999985
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-39 Score=241.58 Aligned_cols=288 Identities=15% Similarity=0.268 Sum_probs=230.4
Q ss_pred cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC--eEEEeeeeccccceEEeeecCCCCceEEEEeecC
Q 019059 11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG 88 (346)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~ 88 (346)
.++.+..++..+...+....+++. ...+-.+.+|++..+.. ....+.+.+|...|..+..++++++.+++ +
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~s---asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~----s 82 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVS---ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA----S 82 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEE---cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec----c
Confidence 355566777777766654444443 24567888999876532 23457889999999999999999998885 8
Q ss_pred CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
.|+++++||+. .+++.+.|.+|...|.+++|++|+++ +++++.|.+|++|+.-... ..+. .. ..+.
T Consensus 83 wD~~lrlWDl~---------~g~~t~~f~GH~~dVlsva~s~dn~q-ivSGSrDkTiklwnt~g~c-k~t~--~~-~~~~ 148 (315)
T KOG0279|consen 83 WDGTLRLWDLA---------TGESTRRFVGHTKDVLSVAFSTDNRQ-IVSGSRDKTIKLWNTLGVC-KYTI--HE-DSHR 148 (315)
T ss_pred ccceEEEEEec---------CCcEEEEEEecCCceEEEEecCCCce-eecCCCcceeeeeeecccE-EEEE--ec-CCCc
Confidence 99999999999 77899999999999999999999996 8888999999999987533 2222 21 1236
Q ss_pred eeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059 169 HYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243 (346)
Q Consensus 169 ~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 243 (346)
..|.++.|+|+ ...|+.++.|+++++||+++.+....+. +| ++.++++|||. +.++|+.||.+.+||++. ++
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~-~k 225 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNE-GK 225 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCC-EEecCCCCceEEEEEccC-Cc
Confidence 68999999998 6778899999999999999988777776 56 99999999998 999999999999999998 54
Q ss_pred ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc---------cc
Q 019059 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD---------YE 314 (346)
Q Consensus 244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 314 (346)
.+..+. |...|.+++|+|+. ..|+.+. +..|+|||+.+ ..++..+.. ..
T Consensus 226 ~lysl~-a~~~v~sl~fspnr-ywL~~at-~~sIkIwdl~~-------------------~~~v~~l~~d~~g~s~~~~~ 283 (315)
T KOG0279|consen 226 NLYSLE-AFDIVNSLCFSPNR-YWLCAAT-ATSIKIWDLES-------------------KAVVEELKLDGIGPSSKAGD 283 (315)
T ss_pred eeEecc-CCCeEeeEEecCCc-eeEeecc-CCceEEEeccc-------------------hhhhhhccccccccccccCC
Confidence 566664 78999999999997 5555554 55699999998 444443321 12
Q ss_pred ceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 315 DSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 315 ~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
-...+++|+++|. .|++|-.|+.|++|.+.
T Consensus 284 ~~clslaws~dG~-tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 284 PICLSLAWSADGQ-TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEEEEEcCCCc-EEEeeecCCcEEEEEee
Confidence 2357889999998 88899999999999875
No 10
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-40 Score=244.05 Aligned_cols=281 Identities=22% Similarity=0.322 Sum_probs=236.8
Q ss_pred cceEEEeec---ccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC
Q 019059 28 HTSFLTGTL---SLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ 104 (346)
Q Consensus 28 ~~~~~~g~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~ 104 (346)
..|+++++. .+...+.++++++.+.++... -.-+.-.+.+.+++|++.....+.++ ..||.+++||+..
T Consensus 21 ~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e-~~s~d~~D~LfdV~Wse~~e~~~~~a---~GDGSLrl~d~~~---- 92 (311)
T KOG0277|consen 21 ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE-CQSYDTEDGLFDVAWSENHENQVIAA---SGDGSLRLFDLTM---- 92 (311)
T ss_pred cchhheeehhhcccccCceEEEEecCCCCCeEE-EEeeecccceeEeeecCCCcceEEEE---ecCceEEEeccCC----
Confidence 345555542 345679999999986544443 44455678999999999887777764 6899999999763
Q ss_pred CCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-E
Q 019059 105 LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-A 183 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l 183 (346)
...+++.++.|+.+|.++.|++..++.+++++.|++|++|+...++.... ..+|...|+..+|+|.... +
T Consensus 93 ----~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-----f~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 93 ----PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT-----FNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred ----CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe-----ecCCccEEEEEecCCCCCCeE
Confidence 55789999999999999999999888899999999999999986554333 4568889999999997655 5
Q ss_pred EEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEe
Q 019059 184 VAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC 260 (346)
Q Consensus 184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~ 260 (346)
++++.|+++++||++.......+. .| +.++.|+..++++++||+.|+.|+.||+|+.+.|+..+.+|.-.|..++|
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF 242 (311)
T ss_pred EEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec
Confidence 666789999999999765555555 45 99999999998899999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEE
Q 019059 261 NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVR 340 (346)
Q Consensus 261 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~ 340 (346)
||....+||+++.|=+++|||... ....+.+...|+.-|..++|++..+..+|+++.|..++
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~------------------~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~ 304 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPER------------------QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY 304 (311)
T ss_pred CcchhhHhhhccccceEEeccccc------------------chhhhhhhhccceEEeccccccccCceeeeccccccee
Confidence 999888999999999999999986 25667778889999999999998777999999999999
Q ss_pred Eeee
Q 019059 341 NHML 344 (346)
Q Consensus 341 vw~~ 344 (346)
||+.
T Consensus 305 Vw~p 308 (311)
T KOG0277|consen 305 VWNP 308 (311)
T ss_pred eecc
Confidence 9983
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.1e-41 Score=264.76 Aligned_cols=276 Identities=19% Similarity=0.285 Sum_probs=234.9
Q ss_pred EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ 97 (346)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~ 97 (346)
.|..+.+.+++.|+++|+. .|++.+|+...- -....+..|..+|.++.|++++..+++ |+.+|.|++|+
T Consensus 98 ~V~~v~WtPeGRRLltgs~----SGEFtLWNg~~f---nFEtilQaHDs~Vr~m~ws~~g~wmiS----gD~gG~iKyWq 166 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ----SGEFTLWNGTSF---NFETILQAHDSPVRTMKWSHNGTWMIS----GDKGGMIKYWQ 166 (464)
T ss_pred ceeeEEEcCCCceeEeecc----cccEEEecCcee---eHHHHhhhhcccceeEEEccCCCEEEE----cCCCceEEecc
Confidence 5666778999999999964 467777765332 223456689999999999999999998 48999999999
Q ss_pred cCcccCCCCCccceeeeeeeccC-CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059 98 IPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 176 (346)
.. ...++.+..|. ..|++++|+|.... ++++++||.|+|||....+....+ .+|--.|.+++|
T Consensus 167 pn----------mnnVk~~~ahh~eaIRdlafSpnDsk-F~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksvdW 230 (464)
T KOG0284|consen 167 PN----------MNNVKIIQAHHAEAIRDLAFSPNDSK-FLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSVDW 230 (464)
T ss_pred cc----------hhhhHHhhHhhhhhhheeccCCCCce-eEEecCCCeEEEEeccCCchhhee-----ccCCCCcceecc
Confidence 75 45556666664 89999999997774 888899999999999876544444 356668999999
Q ss_pred CCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc
Q 019059 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH 253 (346)
Q Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 253 (346)
+|....+++++.|..|++||.++++++.++. +| |..+.|+|+++ +|++++.|..++++|+|. .+.+..+++|+.
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkk 307 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRT-MKELFTYRGHKK 307 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCC-eeEEccCCceEEEEehhH-hHHHHHhhcchh
Confidence 9999999999999999999999999999887 55 99999999996 999999999999999996 446889999999
Q ss_pred ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc-cccccceeeEEEeCCCCCcEEEE
Q 019059 254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFAS 332 (346)
Q Consensus 254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s 332 (346)
.++++.|+|-.+.+|.+|+.||.|..|.+.. .+++.. -.+|...|++++|+|-|. +|++
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~-------------------~~p~~~i~~AHd~~iwsl~~hPlGh-il~t 367 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGL-------------------EEPLGEIPPAHDGEIWSLAYHPLGH-ILAT 367 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccc-------------------cccccCCCcccccceeeeeccccce-eEee
Confidence 9999999999989999999999999999985 334333 346999999999999996 9999
Q ss_pred eecCCeEEEee
Q 019059 333 LSYDGRVRNHM 343 (346)
Q Consensus 333 ~~~d~~v~vw~ 343 (346)
|+.|.++++|.
T Consensus 368 gsnd~t~rfw~ 378 (464)
T KOG0284|consen 368 GSNDRTVRFWT 378 (464)
T ss_pred cCCCcceeeec
Confidence 99999999995
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-39 Score=243.38 Aligned_cols=254 Identities=17% Similarity=0.268 Sum_probs=213.7
Q ss_pred EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCc
Q 019059 56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD 135 (346)
Q Consensus 56 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 135 (346)
.....+.+|++.|..++..+.+..++.. .+.|.++.+|++.. .+...+.+++.+++|...|..+..+++|++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~s---asrDk~ii~W~L~~----dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~- 77 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVS---ASRDKTIIVWKLTS----DDIKYGVPVRRLTGHSHFVSDVVLSSDGNF- 77 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEE---cccceEEEEEEecc----CccccCceeeeeeccceEecceEEccCCce-
Confidence 3446788999999999999988877776 48999999999973 244567889999999999999999999995
Q ss_pred EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc-c--ee
Q 019059 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H--VR 212 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~--v~ 212 (346)
+++++.|+.+++||+.+++....+ .+|...|.+++|+||.+.+++++.|.+|.+|+............. . |.
T Consensus 78 alS~swD~~lrlWDl~~g~~t~~f-----~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTRRF-----VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred EEeccccceEEEEEecCCcEEEEE-----EecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 778899999999999987654444 357789999999999999999999999999999855443333333 2 99
Q ss_pred EEEeCCCC-CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059 213 NVDYDTKK-KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP 291 (346)
Q Consensus 213 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 291 (346)
|+.|+|+. +..+++++.|++|++||+++ -+....+.+|++.++.+++|||| .++++|+.||.+.+||++.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~------- 223 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNE------- 223 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccC-------
Confidence 99999994 33899999999999999998 45778899999999999999999 9999999999999999998
Q ss_pred cccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
++.+..+ +|...|.+++|+|+.- .| ....+..|+|||++.
T Consensus 224 ------------~k~lysl-~a~~~v~sl~fspnry-wL-~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 224 ------------GKNLYSL-EAFDIVNSLCFSPNRY-WL-CAATATSIKIWDLES 263 (315)
T ss_pred ------------CceeEec-cCCCeEeeEEecCCce-eE-eeccCCceEEEeccc
Confidence 7777766 4677899999999864 33 444456699999863
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-40 Score=280.16 Aligned_cols=252 Identities=17% Similarity=0.268 Sum_probs=218.0
Q ss_pred eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCccc----------C------------CCCCccceeeeeeec
Q 019059 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY----------G------------QLNSPQLERIAALDA 118 (346)
Q Consensus 61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~----------~------------~~~~~~~~~~~~~~~ 118 (346)
+..-...++|..|++++..++. |-.|..|++|.+.... . ..+.......+++.+
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~----Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLAC----GFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEcCCcceeEeecCCcchhhc----cccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 3334467999999999986666 4588899999998311 0 011122334456889
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (346)
|.++|..+.|+|+.+. ++++++|+++++|.+.+......+ .+|..+|..+.|+|.|-++++++.|++-++|...
T Consensus 450 H~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred CCCceeeeeecccccc-eeeccCCcceeeeecccceeEEEe-----cCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 9999999999999994 888899999999999965433222 3688899999999999999999999999999999
Q ss_pred CCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC
Q 019059 199 SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS 275 (346)
Q Consensus 199 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~ 275 (346)
...+.+.+. +| |.|+.|+|+.. ++++|+.|.+|++||+.+ +..++.|.+|.++|.+++|||+| ++|++|+.|+
T Consensus 524 ~~~PlRifa-ghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~ 599 (707)
T KOG0263|consen 524 HNKPLRIFA-GHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCG-RYLASGDEDG 599 (707)
T ss_pred cCCchhhhc-ccccccceEEECCccc-ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCC-ceEeecccCC
Confidence 988888777 77 99999999998 899999999999999998 66899999999999999999999 9999999999
Q ss_pred eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
.|++||+.. +.++..+.+|.+.|.++.|+.+|. +||+++.|.+|++||+.+
T Consensus 600 ~I~iWDl~~-------------------~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 600 LIKIWDLAN-------------------GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTK 650 (707)
T ss_pred cEEEEEcCC-------------------CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchh
Confidence 999999998 899999999999999999999997 999999999999999864
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=241.83 Aligned_cols=248 Identities=17% Similarity=0.220 Sum_probs=215.7
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
+.+.+|.+.|.++.|+++.++++++ +.||.+.|||.- +....+.++-....|..++|+|.|+. +++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSa----SqDGklIvWDs~---------TtnK~haipl~s~WVMtCA~sPSg~~-VAc 114 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSA----SQDGKLIVWDSF---------TTNKVHAIPLPSSWVMTCAYSPSGNF-VAC 114 (343)
T ss_pred EEecccccceeeeEecCCcCeEEee----ccCCeEEEEEcc---------cccceeEEecCceeEEEEEECCCCCe-EEe
Confidence 7788999999999999999999996 799999999987 56677778778889999999999993 555
Q ss_pred EecCCeEEEEEcCCCCC-CceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059 139 SIDEENIFLWSLDCSNK-NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~ 214 (346)
++-|+...||++.+... ..........+|...+.++.|.+ +.+|++++.|.+..+||+++++....+. +| |.++
T Consensus 115 GGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~sl 192 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSL 192 (343)
T ss_pred cCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-CCcccEEEE
Confidence 57899999999985421 12223344678899999999997 6679999999999999999999999887 78 9999
Q ss_pred EeCC-CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059 215 DYDT-KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE 293 (346)
Q Consensus 215 ~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 293 (346)
+++| +++ .+++|+-|+..++||+|. ...+++|.+|+..|++|+|.|+| .-|++|++|++.++||++.
T Consensus 193 sl~p~~~n-tFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRa--------- 260 (343)
T KOG0286|consen 193 SLSPSDGN-TFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRA--------- 260 (343)
T ss_pred ecCCCCCC-eEEecccccceeeeeccC-cceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecC---------
Confidence 9999 555 999999999999999998 57999999999999999999999 9999999999999999998
Q ss_pred cccCCccccccccccccccc--cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 294 SLVESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
...+..+... ..+|++++||..|+ +|.+|..|.++.+||.-
T Consensus 261 ----------D~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 261 ----------DQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTL 303 (343)
T ss_pred ----------CcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecc
Confidence 6666666532 34799999999997 99999999999999963
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.4e-38 Score=266.81 Aligned_cols=299 Identities=18% Similarity=0.311 Sum_probs=239.3
Q ss_pred eeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCC----------------------------CCeEEE
Q 019059 7 GIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG----------------------------GTELIC 58 (346)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~----------------------------~~~~~~ 58 (346)
-|.|..-.....+.+..++.+...++.|. .+..|++|.+.+. ......
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf----~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGF----VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccc----cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 35555555556677777888888777773 3557777777642 122233
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
+.+.+|.++|..+.|+|+.++|+++ ++|+++++|.+. +...+..+++|..+|+++.|+|-|-+ +++
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlSc----SED~svRLWsl~---------t~s~~V~y~GH~~PVwdV~F~P~GyY-Fat 510 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSC----SEDSSVRLWSLD---------TWSCLVIYKGHLAPVWDVQFAPRGYY-FAT 510 (707)
T ss_pred EEeecCCCceeeeeecccccceeec----cCCcceeeeecc---------cceeEEEecCCCcceeeEEecCCceE-EEe
Confidence 6689999999999999999999995 799999999999 78888889999999999999999986 777
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD 215 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~ 215 (346)
++.|++-++|..+....... ..+|...|.++.|+|+..++++|+.|.++++||..+|..++.|. +| |.+++
T Consensus 511 as~D~tArLWs~d~~~PlRi-----faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~ 584 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHNKPLRI-----FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALA 584 (707)
T ss_pred cCCCceeeeeecccCCchhh-----hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEE
Confidence 78899999999886443222 34678899999999999999999999999999999999999887 77 99999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC--C--
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL--P-- 291 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~-- 291 (346)
|+|+|. .|++|+.|+.|.+||+.. +.++..+.+|++.|.++.|+.+| ..||+|+.|++|++||+........ .
T Consensus 585 ~Sp~Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~ 661 (707)
T KOG0263|consen 585 FSPCGR-YLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHIS 661 (707)
T ss_pred EcCCCc-eEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccc
Confidence 999998 899999999999999998 66899999999999999999999 9999999999999999987533300 0
Q ss_pred -cccccCCccccccccccccccccceeeEEEeCCCCCcEEEEe
Q 019059 292 -SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL 333 (346)
Q Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 333 (346)
..+....+......++..+.....+|..+.|...+ ..|+.|
T Consensus 662 ~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN-l~L~~g 703 (707)
T KOG0263|consen 662 TSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN-LLLAVG 703 (707)
T ss_pred cccccccccCCCCcceeeeeeecCceEEEEEEeccc-eeEEec
Confidence 00011111112345566666677789999999865 355554
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.9e-39 Score=255.55 Aligned_cols=238 Identities=21% Similarity=0.372 Sum_probs=211.0
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI 145 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i 145 (346)
..|..++|.|+|+.|+++ +..|.+.+|+.. .......+..|+++|.++.|++++.+ ++++..+|.|
T Consensus 97 c~V~~v~WtPeGRRLltg----s~SGEFtLWNg~---------~fnFEtilQaHDs~Vr~m~ws~~g~w-miSgD~gG~i 162 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTG----SQSGEFTLWNGT---------SFNFETILQAHDSPVRTMKWSHNGTW-MISGDKGGMI 162 (464)
T ss_pred cceeeEEEcCCCceeEee----cccccEEEecCc---------eeeHHHHhhhhcccceeEEEccCCCE-EEEcCCCceE
Confidence 589999999999999996 588899999986 44555567899999999999999995 7777789999
Q ss_pred EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCc
Q 019059 146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKH 222 (346)
Q Consensus 146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~ 222 (346)
++|+..-.. ..... ..|...|++++|+|++..+++++.||+|+|||....+....+. +| |.+++|+|...
T Consensus 163 KyWqpnmnn-Vk~~~----ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kg- 235 (464)
T KOG0284|consen 163 KYWQPNMNN-VKIIQ----AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKG- 235 (464)
T ss_pred Eecccchhh-hHHhh----HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccc-
Confidence 999987432 11111 1234689999999999999999999999999999988877775 66 99999999988
Q ss_pred EEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059 223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR 302 (346)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (346)
++++|+.|..|++||.++ +.++.++..|+..|..+.|+|++ ++|+++|.|..++++|+++
T Consensus 236 LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~------------------ 295 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT------------------ 295 (464)
T ss_pred eeEEccCCceeEeecCCC-cchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhH------------------
Confidence 999999999999999998 66899999999999999999999 9999999999999999997
Q ss_pred ccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
-+.++++.+|...|+++.|+|-...+|++|+.||.|..|.+.
T Consensus 296 -mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 296 -MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred -hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 788999999999999999999887899999999999999864
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=247.21 Aligned_cols=286 Identities=16% Similarity=0.249 Sum_probs=237.3
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v 95 (346)
+..+--+.+++++..++.++ .+....+|.+..+.......++.+|..+|..+.||||.++|+++ |.+..+.+
T Consensus 224 tdEVWfl~FS~nGkyLAsaS----kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC----g~~e~~~l 295 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASAS----KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC----GFDEVLSL 295 (519)
T ss_pred CCcEEEEEEcCCCeeEeecc----CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec----CchHheee
Confidence 34455577888888888764 56778889888887766778999999999999999999999996 67888999
Q ss_pred EecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059 96 WQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (346)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (346)
||+. ++.....+. ++...+.+++|.|||.+ +++|+.|+.+..||++.... ..-.. -....|.++
T Consensus 296 wDv~---------tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~-~~W~g----vr~~~v~dl 360 (519)
T KOG0293|consen 296 WDVD---------TGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNIL-GNWEG----VRDPKVHDL 360 (519)
T ss_pred ccCC---------cchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchh-hcccc----cccceeEEE
Confidence 9998 666665553 23578999999999997 88889999999999985431 11100 011369999
Q ss_pred EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc
Q 019059 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH 253 (346)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 253 (346)
+..+||+++++.+.|..|++++..+......+...+ ++++..+.+++ ++++.-.+..+++||+.. ...++.+.+|..
T Consensus 361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq 438 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE-NKLVRKYFGHKQ 438 (519)
T ss_pred EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch-hhHHHHhhcccc
Confidence 999999999999999999999999887776666555 99999999998 777888889999999996 668888999886
Q ss_pred ceEE--EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEE
Q 019059 254 WTWA--VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA 331 (346)
Q Consensus 254 ~v~~--v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 331 (346)
.-.- -+|-.....++++||+|+.|+||+..+ ++++.++.||...|++++|+|..+.++|
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-------------------gkll~~LsGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-------------------GKLLAVLSGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred cceEEEeccCCCCcceEEecCCCceEEEEEccC-------------------CceeEeecCCcceeeEEecCCCCHHHhh
Confidence 5333 345444448999999999999999999 9999999999999999999999999999
Q ss_pred EeecCCeEEEeeec
Q 019059 332 SLSYDGRVRNHMLE 345 (346)
Q Consensus 332 s~~~d~~v~vw~~~ 345 (346)
++|.||+||||.+.
T Consensus 500 SasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 500 SASDDGTIRIWGPS 513 (519)
T ss_pred ccCCCCeEEEecCC
Confidence 99999999999764
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=231.98 Aligned_cols=282 Identities=17% Similarity=0.279 Sum_probs=241.0
Q ss_pred eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEE
Q 019059 15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA 94 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~ 94 (346)
+...|..+.+.|++..|+.| +.+.+|.+|++..+.++. ..+.+|.++|..+.|.+++..++++ |.|.+|+
T Consensus 46 h~geI~~~~F~P~gs~~aSg----G~Dr~I~LWnv~gdceN~--~~lkgHsgAVM~l~~~~d~s~i~S~----gtDk~v~ 115 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASG----GSDRAIVLWNVYGDCENF--WVLKGHSGAVMELHGMRDGSHILSC----GTDKTVR 115 (338)
T ss_pred CcceEEEEEECCCCCeEeec----CCcceEEEEeccccccce--eeeccccceeEeeeeccCCCEEEEe----cCCceEE
Confidence 44566677888999999887 578999999976654433 3445999999999999999999996 7999999
Q ss_pred EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059 95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (346)
Q Consensus 95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (346)
.||++ +++..+.++.|..-|+.+.-+.-|..++.+++.|+++++||+++......+..+. +++++
T Consensus 116 ~wD~~---------tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky------qltAv 180 (338)
T KOG0265|consen 116 GWDAE---------TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY------QLTAV 180 (338)
T ss_pred EEecc---------cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce------eEEEE
Confidence 99999 8999999999999999999777788655566889999999999766554444333 89999
Q ss_pred EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---cceeee
Q 019059 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQEL 248 (346)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~ 248 (346)
.|..++..+++|+-|+.|++||++.......+. +| |+.+..+|+|. .+.+-+-|.++++||+|... +++..+
T Consensus 181 ~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 181 GFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred EecccccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEEEe
Confidence 999999999999999999999999999888887 77 99999999998 88899999999999998532 246667
Q ss_pred cCCCc----ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059 249 PGHTH----WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (346)
Q Consensus 249 ~~~~~----~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (346)
.+|.. ....++|+|++ ..+.+|+.|..+++||... ...+..+.+|.+.|.+++|+|
T Consensus 259 ~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~-------------------r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTS-------------------RRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred ecchhhhhhhcceeeccCCC-CccccccccceEEEeeccc-------------------ccEEEEcCCcceeEEEeeecC
Confidence 66543 34577899999 9999999999999999998 789999999999999999999
Q ss_pred CCCcEEEEeecCCeEEEeee
Q 019059 325 REPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 325 ~~~~~l~s~~~d~~v~vw~~ 344 (346)
..+ +|.+++.|.+|++=.+
T Consensus 319 ~e~-iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 319 TEP-IILSCSSDKTIYLGEI 337 (338)
T ss_pred CCc-EEEEeccCceeEeecc
Confidence 998 9999999999987443
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-36 Score=243.44 Aligned_cols=279 Identities=19% Similarity=0.336 Sum_probs=243.1
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v 95 (346)
.+-++.+.++.++.-+++|. .++.+++|+.... ....+..|.++|.++.|+..|.+|+++ +.|+++.+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~----~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~----~vD~ttil 302 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGS----EDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSG----GVDGTTIL 302 (524)
T ss_pred cCCcceEEecCCCCeEEEee----cCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEec----cCCccEEE
Confidence 35678888999999999885 6789999977664 346777899999999999999999995 89999999
Q ss_pred EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (346)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (346)
||.- .+...+.+..|..+-..+.|-.+.. +++++.|+.|+|+.+....+...+ .+|..+|.++.
T Consensus 303 wd~~---------~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk 366 (524)
T KOG0273|consen 303 WDAH---------TGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALK 366 (524)
T ss_pred Eecc---------CceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEEecCCCcceee-----ecccCceEEEE
Confidence 9987 6778888888988888999988877 788888999999999865544333 34778999999
Q ss_pred eCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCC--------cEEEEecCCCeEEEEEcccCCcc
Q 019059 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK--------HLLVTAADESGIHLWDLRMLKAP 244 (346)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~~~ 244 (346)
|+|.+..|++++.|++++||.+........+. +| |..+.|+|.++ ..+++++.|++|++||+.. ..+
T Consensus 367 ~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~ 444 (524)
T KOG0273|consen 367 WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVP 444 (524)
T ss_pred ECCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-Cce
Confidence 99999999999999999999999888888777 55 99999998764 3688999999999999997 679
Q ss_pred eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (346)
Q Consensus 245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (346)
+..|..|+.+|++++|+|+| .++|+|+.||.|.||++++ ++.++.+.+.. .|..++|+.
T Consensus 445 i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~-------------------~~l~~s~~~~~-~Ifel~Wn~ 503 (524)
T KOG0273|consen 445 IHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKT-------------------GKLVKSYQGTG-GIFELCWNA 503 (524)
T ss_pred eEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccc-------------------hheeEeecCCC-eEEEEEEcC
Confidence 99999999999999999999 9999999999999999999 88888887654 499999999
Q ss_pred CCCcEEEEeecCCeEEEeeecC
Q 019059 325 REPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 325 ~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
+|. .|..+-.|+.+++-|+.+
T Consensus 504 ~G~-kl~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 504 AGD-KLGACASDGSVCVLDLRK 524 (524)
T ss_pred CCC-EEEEEecCCCceEEEecC
Confidence 997 788888899999998853
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-37 Score=239.92 Aligned_cols=263 Identities=18% Similarity=0.338 Sum_probs=231.0
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
.++..+++|++.... + ...+.+|.+.|.+++|+..|+.++++ +.|-.+++||.+. ..++++.+.+
T Consensus 127 s~d~tikv~D~~tg~--~-e~~LrGHt~sv~di~~~a~Gk~l~tc----SsDl~~~LWd~~~--------~~~c~ks~~g 191 (406)
T KOG0295|consen 127 SEDATIKVFDTETGE--L-ERSLRGHTDSVFDISFDASGKYLATC----SSDLSAKLWDFDT--------FFRCIKSLIG 191 (406)
T ss_pred cCCceEEEEEccchh--h-hhhhhccccceeEEEEecCccEEEec----CCccchhheeHHH--------HHHHHHHhcC
Confidence 467889999877643 3 67889999999999999999888885 6887899999983 3678888889
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (346)
|+..|.+++|-|.|.+ +++++.|.+|+.|++.++.....+ .+|...+..++.+.||..+++++.|.+|++|-+.
T Consensus 192 h~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~t~-----~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 192 HEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVKTF-----PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred cccceeeEEEEecCCe-eeecccccceeEEecccceeEEec-----cCchHhEEEEEecCCeeEEEecCCCceEEEEEec
Confidence 9999999999999985 777789999999999987654443 4577789999999999999999999999999999
Q ss_pred CCCccceee-ccc-eeEEEeCCCC--------------CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059 199 SMGKTNSIE-HAH-VRNVDYDTKK--------------KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP 262 (346)
Q Consensus 199 ~~~~~~~~~-~~~-v~~~~~~~~~--------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 262 (346)
++++...+. .+| |.+++|.|.. ..++.+++.|++|++||+.. ..++.++.+|.++|..++|+|
T Consensus 266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p 344 (406)
T KOG0295|consen 266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSP 344 (406)
T ss_pred cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcC
Confidence 998777666 233 9999997741 13789999999999999998 668999999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059 263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 263 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw 342 (346)
.| +||+++.+|+++++||++. .++++++..|..-|++++|+.+.+ ++++|+-|..+++|
T Consensus 345 ~G-kyi~ScaDDktlrvwdl~~-------------------~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 345 GG-KYILSCADDKTLRVWDLKN-------------------LQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVW 403 (406)
T ss_pred CC-eEEEEEecCCcEEEEEecc-------------------ceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeee
Confidence 99 9999999999999999998 899999999999999999999888 99999999999999
Q ss_pred ee
Q 019059 343 ML 344 (346)
Q Consensus 343 ~~ 344 (346)
.-
T Consensus 404 Ec 405 (406)
T KOG0295|consen 404 EC 405 (406)
T ss_pred ec
Confidence 63
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.9e-36 Score=223.49 Aligned_cols=274 Identities=15% Similarity=0.264 Sum_probs=227.3
Q ss_pred CcceeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEE
Q 019059 4 GSSGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFST 83 (346)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 83 (346)
-++.|...+..+..-+..+...++...++++ ....|+++++...+.. ....+.+|...|.++.|.-+|+.+.+
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-----~~qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyT- 100 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAA-----GNQHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYT- 100 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhc-----cCCeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEe-
Confidence 3456777777777777778888888888876 3568999999987654 44788899999999999999999888
Q ss_pred EeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc
Q 019059 84 VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ 163 (346)
Q Consensus 84 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 163 (346)
||+||+++|||++ ...+.+.+ .|.++|+++..+|+... ++++..+|.|++||+.......++.+..
T Consensus 101 ---gseDgt~kIWdlR---------~~~~qR~~-~~~spVn~vvlhpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 101 ---GSEDGTVKIWDLR---------SLSCQRNY-QHNSPVNTVVLHPNQTE-LISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred ---cCCCceEEEEecc---------Ccccchhc-cCCCCcceEEecCCcce-EEeecCCCcEEEEEccCCccccccCCCC
Confidence 5899999999998 44444444 67899999999999885 8888889999999999776555555433
Q ss_pred cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-----ccc---eeEEEeCCCCCcEEEEecCCCeEEE
Q 019059 164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-----HAH---VRNVDYDTKKKHLLVTAADESGIHL 235 (346)
Q Consensus 164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~---v~~~~~~~~~~~~l~~~~~dg~i~i 235 (346)
...+.++...|+|.+++++...|..++|++-+.+....+. ..| +..+.++|+++ +|++++.|.+++|
T Consensus 167 ----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~i 241 (311)
T KOG0315|consen 167 ----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKI 241 (311)
T ss_pred ----CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEE
Confidence 2489999999999999999999999999998765332222 133 99999999998 8999999999999
Q ss_pred EEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc
Q 019059 236 WDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED 315 (346)
Q Consensus 236 ~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (346)
|+....-+....+++|+.++..++||.+| .||++|+.|+.+++||+.. ++.+....+|-.
T Consensus 242 wn~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~-------------------~k~v~qy~gh~K 301 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSA-------------------GKEVRQYQGHHK 301 (311)
T ss_pred EecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeeccccc-------------------CceeeecCCccc
Confidence 99987534566788999999999999999 9999999999999999998 899999999988
Q ss_pred eeeEEEeC
Q 019059 316 SVYGLAWS 323 (346)
Q Consensus 316 ~v~~~~~~ 323 (346)
...+++..
T Consensus 302 ~~vc~~ln 309 (311)
T KOG0315|consen 302 AAVCVALN 309 (311)
T ss_pred ccEEEEee
Confidence 77777653
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.3e-37 Score=248.95 Aligned_cols=290 Identities=15% Similarity=0.208 Sum_probs=243.4
Q ss_pred eecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC
Q 019059 9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG 88 (346)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~ 88 (346)
++.+..++..++++.+-+-...|+++ .+.++.|++|++.++.. ..+++.+|..+|.+++|++++..++++ +
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS---~gmD~~vklW~vy~~~~--~lrtf~gH~k~Vrd~~~s~~g~~fLS~----s 277 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLS---GGMDGLVKLWNVYDDRR--CLRTFKGHRKPVRDASFNNCGTSFLSA----S 277 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEe---cCCCceEEEEEEecCcc--eehhhhcchhhhhhhhccccCCeeeee----e
Confidence 34445556677777777744444443 25789999999999644 447889999999999999999999996 7
Q ss_pred CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
-|+.|++||++ +++++..+. ....++|+.|.|++.+++++|+.|+.|+.||+++++...++ ..|.
T Consensus 278 fD~~lKlwDtE---------TG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hL 342 (503)
T KOG0282|consen 278 FDRFLKLWDTE---------TGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHL 342 (503)
T ss_pred cceeeeeeccc---------cceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-----Hhhh
Confidence 99999999999 888888883 35678999999999888999999999999999987744333 2366
Q ss_pred eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc--c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC--c
Q 019059 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--A 243 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~ 243 (346)
..+..+.|-++++.+++++.|++++||+.+.+-.+..+... | ..++..+|+++ .+++-+.|..|.+|.+...- .
T Consensus 343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccC
Confidence 78999999999999999999999999999988776655433 3 88999999998 89999999999999876421 1
Q ss_pred ceeeecCCC--cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEE
Q 019059 244 PIQELPGHT--HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA 321 (346)
Q Consensus 244 ~~~~~~~~~--~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 321 (346)
..+.+++|. +.-..+.||||| .+|++|+.||.+.+||.++ .+++..++.|.+++..+.
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt-------------------~kl~~~lkah~~~ci~v~ 481 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKT-------------------TKLVSKLKAHDQPCIGVD 481 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechh-------------------hhhhhccccCCcceEEEE
Confidence 345577776 445678899999 9999999999999999999 899999999999999999
Q ss_pred eCCCCCcEEEEeecCCeEEEee
Q 019059 322 WSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 322 ~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
|+|.....+|+++.||.|++|+
T Consensus 482 wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCcceeEecccCceeEecC
Confidence 9999888999999999999996
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=251.64 Aligned_cols=311 Identities=14% Similarity=0.138 Sum_probs=247.8
Q ss_pred ceeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEe
Q 019059 6 SGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 85 (346)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 85 (346)
..++|.+......|..+.++..+..+++|+. .-+++.+|+...+.. .....+|...+++++++|||+.+++
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsY---VlKQQgH~~~i~~l~YSpDgq~iaT--- 367 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESY---VLKQQGHSDRITSLAYSPDGQLIAT--- 367 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccce---eeeccccccceeeEEECCCCcEEEe---
Confidence 4567777777778888889888999999863 467999999888643 2344589999999999999999888
Q ss_pred ecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC
Q 019059 86 STGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS 165 (346)
Q Consensus 86 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 165 (346)
|++|+.|+|||.. .+-+..++..|++.|+.+.|+..++ .+++++-||+|+.||+........+..+.
T Consensus 368 -G~eDgKVKvWn~~---------SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~-- 434 (893)
T KOG0291|consen 368 -GAEDGKVKVWNTQ---------SGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPE-- 434 (893)
T ss_pred -ccCCCcEEEEecc---------CceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCC--
Confidence 4799999999988 7889999999999999999999998 47777889999999998766554444332
Q ss_pred CCceeeEEEEeCCCCCcEEEEecCC-eEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059 166 GMLHYLSGGAWDPHDVNAVAATCES-SVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (346)
Q Consensus 166 ~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (346)
..+..+++..|.|..+.+|+.|. .|++|++++|+.+-.+. +| |.+++|+|.+. .|++++.|.+|++||+-..
T Consensus 435 --p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 435 --PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred --ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccC-eEEeccccceEEEEEeecc
Confidence 33678999999999888888764 79999999999888777 77 99999999998 9999999999999999875
Q ss_pred CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc-cccccccccccccccceeeEE
Q 019059 242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP-NQRANSLLNSYSDYEDSVYGL 320 (346)
Q Consensus 242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~ 320 (346)
...+.++. +...+..++|.|+| ..||+++.||.|.+||.................+ .+................+.+
T Consensus 511 ~~~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti 588 (893)
T KOG0291|consen 511 SGTVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI 588 (893)
T ss_pred CceeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence 55666665 67889999999999 9999999999999999987322211111100000 011112222222344678999
Q ss_pred EeCCCCCcEEEEeecCCeEEEeeec
Q 019059 321 AWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 321 ~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++++||. .+++||..+.|++|++.
T Consensus 589 ~ySaDG~-~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 589 CYSADGK-CILAGGESNSICIYDVP 612 (893)
T ss_pred EEcCCCC-EEEecCCcccEEEEECc
Confidence 9999998 88999999999999974
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-37 Score=240.58 Aligned_cols=246 Identities=19% Similarity=0.256 Sum_probs=218.1
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
..+.+|..+|+.+-|+|+...++++ +.|++|++||.. +++....+++|...+..++|+..|++ +++
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~a----s~d~tikv~D~~---------tg~~e~~LrGHt~sv~di~~~a~Gk~-l~t 167 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSA----SEDATIKVFDTE---------TGELERSLRGHTDSVFDISFDASGKY-LAT 167 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEe----cCCceEEEEEcc---------chhhhhhhhccccceeEEEEecCccE-EEe
Confidence 5567899999999999977666654 699999999998 78889999999999999999999984 666
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD 215 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~ 215 (346)
++.|-.+++||.++.... .....+|...|.++.|-|.|.++++++.|.+|+.|++.++.++.++. +| +..++
T Consensus 168 cSsDl~~~LWd~~~~~~c----~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~ 242 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRC----IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVR 242 (406)
T ss_pred cCCccchhheeHHHHHHH----HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEE
Confidence 677888999999853221 12234577799999999999999999999999999999999999998 55 99999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCC--------------CcEEEEecCCCeEEEEe
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY--------------DGFILSAGTDSTVNLWL 281 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~--------------~~~l~s~~~d~~i~iwd 281 (346)
.+.||. ++++++.|.++++|-+.+ +++...++.|+.+|.+++|.|.. ..++.+++.|++|++||
T Consensus 243 v~~DGt-i~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 243 VNQDGT-IIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred ecCCee-EEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 999998 999999999999999987 66788899999999999998732 25899999999999999
Q ss_pred cCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 282 VSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+.+ +.++.++.+|..+|.+++|+|.|+ +|+++.+|+++++||+.
T Consensus 321 v~t-------------------g~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 321 VST-------------------GMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLK 364 (406)
T ss_pred ccC-------------------CeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEec
Confidence 999 999999999999999999999997 99999999999999985
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-36 Score=243.14 Aligned_cols=281 Identities=17% Similarity=0.250 Sum_probs=227.3
Q ss_pred eEeeeccCCCCcc-eEEEeecccCCCCeEEEEEecCCCCeEEE----e-------eeeccccceEEeeecCCCCceEEEE
Q 019059 17 RCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGGTELIC----E-------GLFSHPNEIWDLSSCPFDQRIFSTV 84 (346)
Q Consensus 17 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~~~~~~----~-------~~~~h~~~v~~~~~~~~~~~l~~~~ 84 (346)
..+....++|... -++.|. .+-..++|++......... + .-......|++++|+.+|..|+++
T Consensus 179 ~~V~~~~WnP~~~~llasg~----~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG- 253 (524)
T KOG0273|consen 179 SEVFICAWNPLRDGLLASGS----GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG- 253 (524)
T ss_pred CceEEEecCchhhhhhhccC----CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe-
Confidence 3455556666665 444443 3344567776642111111 0 111123689999999999988884
Q ss_pred eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059 85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS 164 (346)
Q Consensus 85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 164 (346)
..||.+++|+.. +..+.++..|+++|.++.|+..|++ +++++-|+++.+||..++.....+..
T Consensus 254 ---~~~G~~riw~~~----------G~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~--- 316 (524)
T KOG0273|consen 254 ---SEDGEARIWNKD----------GNLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEF--- 316 (524)
T ss_pred ---ecCcEEEEEecC----------chhhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeee---
Confidence 799999999985 6788899999999999999999997 77778899999999987664444333
Q ss_pred CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059 165 SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (346)
Q Consensus 165 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (346)
|..+...+.|-. ...+++.+.|+.|+++.+....++.++. +| |.++.|+|.+. +|++++.|++++||....
T Consensus 317 --~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~- 390 (524)
T KOG0273|consen 317 --HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQ- 390 (524)
T ss_pred --ccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCc-eEEEecCCCeeEeeecCC-
Confidence 333446678874 4558888899999999999999999998 46 99999999998 999999999999999887
Q ss_pred CcceeeecCCCcceEEEEeCCCCC--------cEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc
Q 019059 242 KAPIQELPGHTHWTWAVCCNPEYD--------GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY 313 (346)
Q Consensus 242 ~~~~~~~~~~~~~v~~v~~~~~~~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (346)
....+.+..|...|..+.|+|.|+ ..+++++.|++|++||+.. +.+++++..|
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-------------------gv~i~~f~kH 451 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-------------------GVPIHTLMKH 451 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-------------------CceeEeeccC
Confidence 557889999999999999999773 5789999999999999999 9999999999
Q ss_pred cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 314 EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 314 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+.+|.+++|+|+++ ++|+|+.||.|.+|++.
T Consensus 452 ~~pVysvafS~~g~-ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGR-YLASGSLDGCVHIWSTK 482 (524)
T ss_pred CCceEEEEecCCCc-EEEecCCCCeeEecccc
Confidence 99999999999997 99999999999999864
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-36 Score=252.24 Aligned_cols=246 Identities=16% Similarity=0.255 Sum_probs=219.9
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
+.+..+...|.++.++|..+.++++. -.|.|.|||.+ +...++.+....-+|++..|-+..++ +++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~L----ynG~V~IWnye---------tqtmVksfeV~~~PvRa~kfiaRknW-iv~ 72 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAAL----YNGDVQIWNYE---------TQTMVKSFEVSEVPVRAAKFIARKNW-IVT 72 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEee----ecCeeEEEecc---------cceeeeeeeecccchhhheeeeccce-EEE
Confidence 34455889999999999999999975 77899999998 77888899888999999999988886 888
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD 215 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~ 215 (346)
+++|..|++|+.++.++...+. .|...+.+++.+|..+++++++.|-.|++||-+..-.......+| |.+++
T Consensus 73 GsDD~~IrVfnynt~ekV~~Fe-----AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFE-----AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred ecCCceEEEEecccceeeEEee-----ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 8999999999999887655443 477899999999999999999999999999998765444444477 99999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCC-CcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEY-DGFILSAGTDSTVNLWLVSTSNHDELPSES 294 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 294 (346)
|+|.+++.+++++-|++|++|.+.+ ..+..++++|...|+|+.+-+.| ..+|++|++|.+|+|||.++
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt---------- 216 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT---------- 216 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch----------
Confidence 9999999999999999999999998 55899999999999999998765 36999999999999999999
Q ss_pred ccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
..+++++.||...|..+.|+|.-+ ++++||+||+||||+-
T Consensus 217 ---------k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 217 ---------KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNS 256 (794)
T ss_pred ---------HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecC
Confidence 899999999999999999999998 9999999999999974
No 27
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.1e-35 Score=232.46 Aligned_cols=284 Identities=19% Similarity=0.321 Sum_probs=226.6
Q ss_pred EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCc---eEEEEeecCCcceEE
Q 019059 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR---IFSTVFSTGESYGAA 94 (346)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---l~~~~~~~~~d~~i~ 94 (346)
|++++... ...++.| ..++.+++|+.... ....+.+|.++|.+++|.-.+.. ++++ +.|.+++
T Consensus 107 WVSsv~~~--~~~Iltg----sYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa----s~Dqtl~ 172 (423)
T KOG0313|consen 107 WVSSVKGA--SKWILTG----SYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSA----SMDQTLR 172 (423)
T ss_pred hhhhhccc--CceEEEe----ecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEe----cCCceEE
Confidence 44444433 3344444 46788999977664 45677899999999998543333 5554 8999999
Q ss_pred EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC-------------------
Q 019059 95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK------------------- 155 (346)
Q Consensus 95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~------------------- 155 (346)
+|.++.... ..+.+....+|...|-+++..++|.. +++++.|..|.+|+......
T Consensus 173 Lw~~~~~~~-----~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~ 246 (423)
T KOG0313|consen 173 LWKWNVGEN-----KVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE 246 (423)
T ss_pred EEEecCchh-----hhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence 999873211 23344455699999999999999995 78889999999999332110
Q ss_pred -CceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeE
Q 019059 156 -NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGI 233 (346)
Q Consensus 156 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i 233 (346)
..+.......+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+.... +++++.+|... +|++|+.|..+
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~-Ll~~gssdr~i 324 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK-LLASGSSDRHI 324 (423)
T ss_pred ccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccc-eeeecCCCCce
Confidence 00011112468999999999997 7789999999999999999999998888666 99999999887 99999999999
Q ss_pred EEEEcccCCc--ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc
Q 019059 234 HLWDLRMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS 311 (346)
Q Consensus 234 ~i~d~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (346)
++||.|+... +.++|.+|++.|.++.|+|..+..|++++.|+++++||+|+ ...++..+.
T Consensus 325 rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS------------------~k~plydI~ 386 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS------------------TKAPLYDIA 386 (423)
T ss_pred eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc------------------CCCcceeec
Confidence 9999997543 55778899999999999999988999999999999999998 244899999
Q ss_pred cccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 312 DYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 312 ~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
+|...|.++.|+..+ ++++||.|.+|+++.
T Consensus 387 ~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 387 GHNDKVLSVDWNEGG--LIVSGGADNKLRIFK 416 (423)
T ss_pred cCCceEEEEeccCCc--eEEeccCcceEEEec
Confidence 999999999999743 799999999999985
No 28
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3e-34 Score=234.76 Aligned_cols=291 Identities=17% Similarity=0.224 Sum_probs=227.8
Q ss_pred cceeeEeeeccCCCCc-ceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059 13 KYQARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (346)
Q Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~ 91 (346)
..+.|.+.++.+.|.. -|++.| ++++.+.+++=++ ......+..|..-|+|++|+|||.+++++ |.|+
T Consensus 144 ~GhSr~ins~~~KpsRPfRi~T~----sdDn~v~ffeGPP---FKFk~s~r~HskFV~~VRysPDG~~Fat~----gsDg 212 (603)
T KOG0318|consen 144 TGHSRRINSVDFKPSRPFRIATG----SDDNTVAFFEGPP---FKFKSSFREHSKFVNCVRYSPDGSRFATA----GSDG 212 (603)
T ss_pred eccceeEeeeeccCCCceEEEec----cCCCeEEEeeCCC---eeeeecccccccceeeEEECCCCCeEEEe----cCCc
Confidence 3456777777766644 455554 4667666664333 33446677899999999999999998887 7999
Q ss_pred eEEEEecCcccCCCCCccceeeeeee---ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee-------
Q 019059 92 GAAIWQIPELYGQLNSPQLERIAALD---AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS------- 161 (346)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~------- 161 (346)
++.+||=. +++.+..+. +|++.|++++|+||+++ +++++.|.+++|||+.+.....+...
T Consensus 213 ki~iyDGk---------tge~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dq 282 (603)
T KOG0318|consen 213 KIYIYDGK---------TGEKVGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQ 282 (603)
T ss_pred cEEEEcCC---------CccEEEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhce
Confidence 99999976 677777776 89999999999999997 77777899999999987643221110
Q ss_pred -------------------------------cccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce-----
Q 019059 162 -------------------------------KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS----- 205 (346)
Q Consensus 162 -------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----- 205 (346)
....+|...|+++..+|++.+|++++.||.|.-||..++..-+.
T Consensus 283 qvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h 362 (603)
T KOG0318|consen 283 QVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH 362 (603)
T ss_pred EEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc
Confidence 12368899999999999999999999999999998765432100
Q ss_pred --------------------------e-------------e------------c--------------------------
Q 019059 206 --------------------------I-------------E------------H-------------------------- 208 (346)
Q Consensus 206 --------------------------~-------------~------------~-------------------------- 208 (346)
+ . .
T Consensus 363 ~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~ 442 (603)
T KOG0318|consen 363 TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPI 442 (603)
T ss_pred cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecc
Confidence 0 0 0
Q ss_pred cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059 209 AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286 (346)
Q Consensus 209 ~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 286 (346)
+. ..+++++|++. .+++|+.|+.|++|.+.... .....+..|..+|+++++||++ .+||++...+.+.+||+.+
T Consensus 443 ~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s-- 518 (603)
T KOG0318|consen 443 GYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVAS-- 518 (603)
T ss_pred ccccceEEEcCCCC-EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEccc--
Confidence 00 56788899998 89999999999999988533 2333556799999999999999 9999999999999999998
Q ss_pred CCCCCcccccCCcccccccc-ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 287 HDELPSESLVESPNQRANSL-LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
.+. .....-|...|.+++|+|+.. ++|+|+.|..|.||++++
T Consensus 519 -----------------~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 519 -----------------REVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKK 561 (603)
T ss_pred -----------------CceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccC
Confidence 333 233345899999999999997 999999999999999874
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.3e-36 Score=233.82 Aligned_cols=243 Identities=17% Similarity=0.279 Sum_probs=219.8
Q ss_pred EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (346)
Q Consensus 58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 137 (346)
.+.+.+|.+.|.|+++.|.++.+++ |+.|++++|||+. +++...++.+|...|..+++|+-..| ++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~t----gs~DrtikIwDla---------tg~LkltltGhi~~vr~vavS~rHpY-lF 209 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFAT----GSADRTIKIWDLA---------TGQLKLTLTGHIETVRGVAVSKRHPY-LF 209 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEe----cCCCceeEEEEcc---------cCeEEEeecchhheeeeeeecccCce-EE
Confidence 3678899999999999998777776 5899999999999 88999999999999999999999997 77
Q ss_pred EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (346)
Q Consensus 138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~ 214 (346)
+++.|+.|+.||++.++.... ..+|...|++++.+|.-..|++++.|.++++||+++...+..+. +| |.++
T Consensus 210 s~gedk~VKCwDLe~nkvIR~-----YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V 283 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRH-----YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASV 283 (460)
T ss_pred EecCCCeeEEEechhhhhHHH-----hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeE
Confidence 778999999999996553333 35688899999999999999999999999999999999999887 77 9999
Q ss_pred EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES 294 (346)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 294 (346)
.+.|.++ .+++|+.|++|++||++. ++...++..|...|.+++.+|.. ..||+++.|. |+-|++..
T Consensus 284 ~~~~~dp-qvit~S~D~tvrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~---------- 349 (460)
T KOG0285|consen 284 MCQPTDP-QVITGSHDSTVRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPE---------- 349 (460)
T ss_pred EeecCCC-ceEEecCCceEEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCc----------
Confidence 9999888 899999999999999998 55778888899999999999998 8999999885 99999998
Q ss_pred ccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 295 LVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+..+..+.+|...|.+++.+.|+ ++++|++.|.+.+||.+
T Consensus 350 ---------g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 350 ---------GEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred ---------cchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecC
Confidence 89999999999999999999987 68999999999999964
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=214.80 Aligned_cols=294 Identities=19% Similarity=0.314 Sum_probs=225.7
Q ss_pred cccceeeEeeeccCCCC-cceEEEeecccCCCCeEEEEEecCCCCeEEEee--eeccccceEEeeecCCCCceEEEEeec
Q 019059 11 GLKYQARCISDVKADTD-HTSFLTGTLSLKEENEVHLLRLSSGGTELICEG--LFSHPNEIWDLSSCPFDQRIFSTVFST 87 (346)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~~~~~~~ 87 (346)
.++.+...+-.+.++|. +..|+.+ +.+..|++|..... ....++. -.+|+..|.+++|+|.|++|+++
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAsc----g~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a---- 79 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASC----GTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA---- 79 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEee----cCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEe----
Confidence 34444444555666666 3334333 57889999998852 2233332 24799999999999999988875
Q ss_pred CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (346)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 167 (346)
+.|.++.||.-. ....+++..+.+|...|.|++|+++|.+ +++++.|+.|-||.+..+.... ...-...|
T Consensus 80 SFD~t~~Iw~k~-------~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfe--c~aVL~~H 149 (312)
T KOG0645|consen 80 SFDATVVIWKKE-------DGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFE--CIAVLQEH 149 (312)
T ss_pred eccceEEEeecC-------CCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEE--EEeeeccc
Confidence 799999999865 3467899999999999999999999995 7777899999999998544322 12234568
Q ss_pred ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC---Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM---GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (346)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (346)
...|..+.|+|....|++++.|.+|++|+-..+ .+..++. +| |.+++|++.|. .++++++|++++||-...
T Consensus 150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~- 226 (312)
T KOG0645|consen 150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYT- 226 (312)
T ss_pred cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCc-eEEEecCCcceEeeeecc-
Confidence 889999999999999999999999999987732 3566666 45 99999999997 899999999999998663
Q ss_pred CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccc-ccccccceeeEE
Q 019059 242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGL 320 (346)
Q Consensus 242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~ 320 (346)
. +. ..|...++.+.|. + ..|++++.|+.|++|.-.... ..+..+++. .-..|...|+++
T Consensus 227 ~--~~--~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~-------------d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 227 D--LS--GMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSP-------------DEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred C--cc--hhcccceEeeeec-c--cceEeccCCCEEEEEEecCCC-------------CCchHHHHHhhhcccccccceE
Confidence 1 11 1377899999999 4 589999999999999766410 011123332 445688899999
Q ss_pred EeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 321 AWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 321 ~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
.|+|..+.+|++++.||.|++|.++.
T Consensus 287 ~w~p~~~~~L~s~~DDG~v~~W~l~~ 312 (312)
T KOG0645|consen 287 QWNPKVSNRLASGGDDGIVNFWELEI 312 (312)
T ss_pred EEcCCCCCceeecCCCceEEEEEecC
Confidence 99996556899999999999999863
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.9e-34 Score=235.84 Aligned_cols=281 Identities=21% Similarity=0.361 Sum_probs=232.4
Q ss_pred ceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceE
Q 019059 14 YQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA 93 (346)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i 93 (346)
.+...+..+.+++++..++++. .++.+.+|++.... ....+..|...+..+.|+|+++.++++ +.++.|
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~----~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~~~~i 75 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGS----GDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASG----SSDKTI 75 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEee----cCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEE----cCCCeE
Confidence 3456677888888888888774 47899999998754 234556788999999999999777775 679999
Q ss_pred EEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059 94 AIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG 173 (346)
Q Consensus 94 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 173 (346)
++|++. ..+.+..+..|...|.++.|++++. ++++++.++.|.+||+.+.+....+. .|...+.+
T Consensus 76 ~i~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~i~~ 140 (289)
T cd00200 76 RLWDLE---------TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLR-----GHTDWVNS 140 (289)
T ss_pred EEEEcC---------cccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEec-----cCCCcEEE
Confidence 999998 4466777888988999999999966 35555559999999998554332222 35568999
Q ss_pred EEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC
Q 019059 174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH 251 (346)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 251 (346)
++|+|++..+++++.++.|++||+++++....+.... +.++.|+|++. .+++++.++.|++||++. ..++..+..|
T Consensus 141 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~ 218 (289)
T cd00200 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLST-GKCLGTLRGH 218 (289)
T ss_pred EEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCC-Cceecchhhc
Confidence 9999998777777779999999999888777776322 99999999997 777788899999999987 5567777788
Q ss_pred CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEE
Q 019059 252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA 331 (346)
Q Consensus 252 ~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 331 (346)
...+.++.|+|++ .++++++.|+.|++||+.. +.....+..|...|.+++|+|+++ +|+
T Consensus 219 ~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 277 (289)
T cd00200 219 ENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRT-------------------GECVQTLSGHTNSVTSLAWSPDGK-RLA 277 (289)
T ss_pred CCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC-------------------ceeEEEccccCCcEEEEEECCCCC-EEE
Confidence 9999999999997 8999998899999999997 677788888988999999999987 899
Q ss_pred EeecCCeEEEee
Q 019059 332 SLSYDGRVRNHM 343 (346)
Q Consensus 332 s~~~d~~v~vw~ 343 (346)
+++.|+.+++|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999996
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-35 Score=224.43 Aligned_cols=251 Identities=18% Similarity=0.284 Sum_probs=210.0
Q ss_pred EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (346)
Q Consensus 58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 137 (346)
...+.+|++.|+.+.|+|+|..+++ +|.|..|.+|+... ..+....+++|.+.|..+.|.+|+.. ++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aS----gG~Dr~I~LWnv~g--------dceN~~~lkgHsgAVM~l~~~~d~s~-i~ 106 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFAS----GGSDRAIVLWNVYG--------DCENFWVLKGHSGAVMELHGMRDGSH-IL 106 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEee----cCCcceEEEEeccc--------cccceeeeccccceeEeeeeccCCCE-EE
Confidence 3567899999999999999998888 58999999999752 45666678899999999999999995 77
Q ss_pred EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEE-EEecCCeEEEEEccCCCccceeeccc-eeEEE
Q 019059 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH-VRNVD 215 (346)
Q Consensus 138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~ 215 (346)
+++.|.+|+.||+++++...+. .+|...++.+.-+.-|..++ +++.|+++++||+|+..+++++.... ++++.
T Consensus 107 S~gtDk~v~~wD~~tG~~~rk~-----k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~ 181 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRIRKH-----KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVG 181 (338)
T ss_pred EecCCceEEEEecccceeeehh-----ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEE
Confidence 7788999999999988765544 34666788887554455544 55679999999999999998887555 99999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL 295 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 295 (346)
|..++. -+.+|+-|+.|++||+|+ ......+.+|..+|+.+..+|+| .++.+-+.|.++++||++....
T Consensus 182 f~d~s~-qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p-------- 250 (338)
T KOG0265|consen 182 FKDTSD-QVISGGIDNDIKVWDLRK-NDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAP-------- 250 (338)
T ss_pred eccccc-ceeeccccCceeeecccc-CcceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCC--------
Confidence 999998 789999999999999998 66899999999999999999999 9999999999999999996211
Q ss_pred cCCccccccccccccccccc----eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 296 VESPNQRANSLLNSYSDYED----SVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
...++..+.+|.. .....+|+|++. .+.+|+.|+.+++||..
T Consensus 251 -------~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 251 -------SQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTT 296 (338)
T ss_pred -------CCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecc
Confidence 1344666666543 356789999997 89999999999999964
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-34 Score=251.38 Aligned_cols=284 Identities=19% Similarity=0.339 Sum_probs=235.7
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v 95 (346)
.+.+..+.+.+++..++.+ ..++.+.+|....... .....+.+|...|.+++|+|++++++++ +.|++|++
T Consensus 159 ~~sv~~~~fs~~g~~l~~~----~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~----s~D~tiri 229 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAA----SSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSG----SDDKTLRI 229 (456)
T ss_pred cCceEEEEEcCCCCeEEEc----cCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEe----cCCceEEE
Confidence 4667777788888776665 3567788888844332 2334557899999999999999988875 79999999
Q ss_pred EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (346)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (346)
||+.. ....++++++|...|++++|+|++ .++++++.|++|++||+++++....+ .+|...|.+++
T Consensus 230 wd~~~--------~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l-----~~hs~~is~~~ 295 (456)
T KOG0266|consen 230 WDLKD--------DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKL-----KGHSDGISGLA 295 (456)
T ss_pred eeccC--------CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEee-----eccCCceEEEE
Confidence 99952 568889999999999999999999 46888899999999999975543333 45777999999
Q ss_pred eCCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059 176 WDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (346)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (346)
|++++..+++++.|+.|++||+.++. +...+.... ++++.|+|++. +++++..|+.+++||++. ...+..+.
T Consensus 296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~-~~~~~~~~ 373 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRS-GKSVGTYT 373 (456)
T ss_pred ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccC-Ccceeeec
Confidence 99999999999999999999999998 444444222 69999999998 899999999999999997 55778888
Q ss_pred CCCcce---EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc-cceeeEEEeCCC
Q 019059 250 GHTHWT---WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-EDSVYGLAWSSR 325 (346)
Q Consensus 250 ~~~~~v---~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 325 (346)
+|...+ .+...++.+ .++++|+.|+.|++||+.+ +..+..+.+| ...+..++|+|.
T Consensus 374 ~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s-------------------~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 374 GHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSS-------------------GGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred ccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCc-------------------cchhhhhcCCCCCceeccccCCC
Confidence 888753 334456778 9999999999999999998 8889999999 888999999999
Q ss_pred CCcEEEEee--cCCeEEEeeec
Q 019059 326 EPWIFASLS--YDGRVRNHMLE 345 (346)
Q Consensus 326 ~~~~l~s~~--~d~~v~vw~~~ 345 (346)
.+ ++++.+ .|+.+++|..+
T Consensus 434 ~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 434 EN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cC-eeeecCcCCCceEEEecCC
Confidence 87 888888 79999999754
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-34 Score=242.57 Aligned_cols=281 Identities=13% Similarity=0.230 Sum_probs=231.0
Q ss_pred eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (346)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw 96 (346)
--+.+..+.+....+++| ...+..+++.+++-+ ....+.--..+|..++|+..|..++.+ ++.-|.+-||
T Consensus 266 ~kvtaa~fH~~t~~lvvg----FssG~f~LyelP~f~---lih~LSis~~~I~t~~~N~tGDWiA~g---~~klgQLlVw 335 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVG----FSSGEFGLYELPDFN---LIHSLSISDQKILTVSFNSTGDWIAFG---CSKLGQLLVW 335 (893)
T ss_pred cceeeeeccCCceEEEEE----ecCCeeEEEecCCce---EEEEeecccceeeEEEecccCCEEEEc---CCccceEEEE
Confidence 345566667677667666 244667777777742 334444445689999999999999987 4677899999
Q ss_pred ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059 97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176 (346)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 176 (346)
++. ....+...++|...+.+++++|||+ +++++++||.|+|||...+-+...+ ..|...|+.+.|
T Consensus 336 eWq---------sEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTF-----teHts~Vt~v~f 400 (893)
T KOG0291|consen 336 EWQ---------SESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTF-----TEHTSGVTAVQF 400 (893)
T ss_pred Eee---------ccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEe-----ccCCCceEEEEE
Confidence 998 4456666779999999999999999 4777789999999999876544333 447889999999
Q ss_pred CCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCC-eEEEEEcccCCcceeeecCCC
Q 019059 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADES-GIHLWDLRMLKAPIQELPGHT 252 (346)
Q Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~ 252 (346)
+..++.+++.+-||+|+.||+...+..+++..+. ..|++..|.|. ++++|+.|. .|.+|++++ ++.+..+.+|+
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qT-GqllDiLsGHE 478 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQT-GQLLDILSGHE 478 (893)
T ss_pred EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeec-CeeeehhcCCC
Confidence 9999999999999999999999999999887555 88999999998 888888776 699999998 77899999999
Q ss_pred cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEE
Q 019059 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS 332 (346)
Q Consensus 253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 332 (346)
++|.+++|+|.+ ..|+++|.|.+||+||+-. ....+.++. +.+.+..++|+|+|+ -|++
T Consensus 479 gPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~------------------s~~~vEtl~-i~sdvl~vsfrPdG~-elaV 537 (893)
T KOG0291|consen 479 GPVSGLSFSPDG-SLLASGSWDKTVRIWDIFS------------------SSGTVETLE-IRSDVLAVSFRPDGK-ELAV 537 (893)
T ss_pred CcceeeEEcccc-CeEEeccccceEEEEEeec------------------cCceeeeEe-eccceeEEEEcCCCC-eEEE
Confidence 999999999999 9999999999999999976 122344443 455699999999998 8999
Q ss_pred eecCCeEEEeeec
Q 019059 333 LSYDGRVRNHMLE 345 (346)
Q Consensus 333 ~~~d~~v~vw~~~ 345 (346)
+..||.|.+||++
T Consensus 538 aTldgqItf~d~~ 550 (893)
T KOG0291|consen 538 ATLDGQITFFDIK 550 (893)
T ss_pred EEecceEEEEEhh
Confidence 9999999999974
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-34 Score=243.70 Aligned_cols=279 Identities=18% Similarity=0.277 Sum_probs=232.5
Q ss_pred CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG 103 (346)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~ 103 (346)
..++...+++++. ...++++++... .+..+.+|.+.|.++....+|-.|++ ++.|.++++|.+++.
T Consensus 332 lG~e~~~laVATN----s~~lr~y~~~~~----~c~ii~GH~e~vlSL~~~~~g~llat----~sKD~svilWr~~~~-- 397 (775)
T KOG0319|consen 332 LGPEESHLAVATN----SPELRLYTLPTS----YCQIIPGHTEAVLSLDVWSSGDLLAT----GSKDKSVILWRLNNN-- 397 (775)
T ss_pred cCCccceEEEEeC----CCceEEEecCCC----ceEEEeCchhheeeeeecccCcEEEE----ecCCceEEEEEecCC--
Confidence 3455566666653 345666655553 34577899999999995555644444 489999999988421
Q ss_pred CCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec----ccCCCceeeEEEEeCCC
Q 019059 104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK----QSSGMLHYLSGGAWDPH 179 (346)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~ 179 (346)
....-++....+|...|.+++++..+..++++++.|.++++|++...+........ ....|...|++++.+|+
T Consensus 398 ---~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 398 ---CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred ---cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence 11345666778999999999999888877777799999999999863322222111 23457789999999999
Q ss_pred CCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE
Q 019059 180 DVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW 256 (346)
Q Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 256 (346)
.+.+++++.|.+.++|+++......++. +| +.++.|+|.+. ++++++.|++|+||.+.+ ..++++|.+|...|.
T Consensus 475 dkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVl 551 (775)
T KOG0319|consen 475 DKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVL 551 (775)
T ss_pred CceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccc-eeEeccCCceEEEEEecc-ceeeeeecCccceeE
Confidence 9999999999999999999888888887 77 99999999998 999999999999999998 559999999999999
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059 257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336 (346)
Q Consensus 257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (346)
.+.|-.++ ..|++++.||-|++|++.+ .+++.++..|...|++++-+|... ++++|+.|
T Consensus 552 ra~F~~~~-~qliS~~adGliKlWnikt-------------------~eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~D 610 (775)
T KOG0319|consen 552 RASFIRNG-KQLISAGADGLIKLWNIKT-------------------NECEMTLDAHNDRVWALSVSPLLD-MFVTGGGD 610 (775)
T ss_pred eeeeeeCC-cEEEeccCCCcEEEEeccc-------------------hhhhhhhhhccceeEEEeecCccc-eeEecCCC
Confidence 99999999 9999999999999999999 999999999999999999999997 99999999
Q ss_pred CeEEEee
Q 019059 337 GRVRNHM 343 (346)
Q Consensus 337 ~~v~vw~ 343 (346)
|.|.+|.
T Consensus 611 g~i~~wk 617 (775)
T KOG0319|consen 611 GRIIFWK 617 (775)
T ss_pred eEEEEee
Confidence 9999994
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.8e-33 Score=259.37 Aligned_cols=294 Identities=13% Similarity=0.226 Sum_probs=218.5
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCC---CCeE-EEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG---GTEL-ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~---~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~ 91 (346)
...+..+.+++++..+++| +.++.|.+|++... .... .......+...|.+++|+|.....+++ ++.|+
T Consensus 483 ~~~V~~i~fs~dg~~latg----g~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las---~~~Dg 555 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATA----GVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVAS---SNFEG 555 (793)
T ss_pred CCcEEEEEECCCCCEEEEE----eCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEE---EeCCC
Confidence 3457778888888888876 46889999987531 1100 011122345689999999864444444 37899
Q ss_pred eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (346)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 171 (346)
.|++||+. ..+.+..+..|...|++++|+|....++++++.|+.|++||+.++.....+.. ...+
T Consensus 556 ~v~lWd~~---------~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------~~~v 620 (793)
T PLN00181 556 VVQVWDVA---------RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------KANI 620 (793)
T ss_pred eEEEEECC---------CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------CCCe
Confidence 99999998 66788888999999999999974433577888899999999987654333321 2368
Q ss_pred EEEEeC-CCCCcEEEEecCCeEEEEEccCCCc-cceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC-----
Q 019059 172 SGGAWD-PHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML----- 241 (346)
Q Consensus 172 ~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----- 241 (346)
.++.|+ +++..+++++.|+.|++||+++.+. ...+. +| |.++.|. ++. .+++++.|+.|++||++..
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccC
Confidence 889995 5688899999999999999997763 33443 55 9999997 555 7999999999999999742
Q ss_pred CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc--cccccccceeeE
Q 019059 242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL--NSYSDYEDSVYG 319 (346)
Q Consensus 242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~ 319 (346)
..++..+.+|...+.+++|+|++ .+|++|+.|+.|++|+........ ..... ....+ .....|...|.+
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~----s~~~~----~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVL----SYKFK----TIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceE----EEecc----cCCcccccccCCCCcEEEE
Confidence 24678899999999999999999 999999999999999987511000 00000 00000 112346678999
Q ss_pred EEeCCCCCcEEEEeecCCeEEEeee
Q 019059 320 LAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 320 ~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
++|+|++. +|++++.||.|+||++
T Consensus 769 v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCC-eEEEecCCCcEEEEec
Confidence 99999997 8999999999999986
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=220.41 Aligned_cols=283 Identities=15% Similarity=0.229 Sum_probs=229.3
Q ss_pred ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (346)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~ 91 (346)
+..++..+-++..+|+..-.+.| +.+..-++|+..... ..-.+.+|++.|.++.|+.++.+|++ |+-+|
T Consensus 60 F~~H~~svFavsl~P~~~l~aTG----GgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLAT----GdmsG 128 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATG----GGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLAT----GDMSG 128 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEec----CCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEe----cCCCc
Confidence 44455666677777755444444 578899999998865 44667899999999999999988888 58999
Q ss_pred eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (346)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 171 (346)
.|+||... ++.....+...-+.|.-+.|+|.+. ++++++.||.+.+|.+.+... .+-..+|..++
T Consensus 129 ~v~v~~~s---------tg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~-----~kv~~Gh~~~c 193 (399)
T KOG0296|consen 129 KVLVFKVS---------TGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQAL-----CKVMSGHNSPC 193 (399)
T ss_pred cEEEEEcc---------cCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcce-----eeEecCCCCCc
Confidence 99999998 5566566655567788899999776 688889999999999986422 22235688899
Q ss_pred EEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc------------------------------------------
Q 019059 172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA------------------------------------------ 209 (346)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------------------------ 209 (346)
++-.|.|+|+.++++..||+|++|++.++++...+...
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence 99999999999999999999999999998776554410
Q ss_pred --------c------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC
Q 019059 210 --------H------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS 275 (346)
Q Consensus 210 --------~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~ 275 (346)
+ |..+.|+..-+ +.++|+-||+|.|||+.. . .++..-.|..+|..+.|-+ . .+|++++.||
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~-~-~~R~~c~he~~V~~l~w~~-t-~~l~t~c~~g 348 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAA-S-TLRHICEHEDGVTKLKWLN-T-DYLLTACANG 348 (399)
T ss_pred CCccccccchhhhhhhhhcccccccc-hhhcccccceEEEEeccc-c-hhheeccCCCceEEEEEcC-c-chheeeccCc
Confidence 0 22223333334 778899999999999986 3 3445556999999999999 4 7899999999
Q ss_pred eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 276 TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.|+.||.++ +++++++.+|...|.+++++|+.+ +++++|.|++.+||++.
T Consensus 349 ~v~~wDaRt-------------------G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 349 KVRQWDART-------------------GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEeeeccc-------------------cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 999999999 999999999999999999999997 99999999999999875
No 38
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-34 Score=214.25 Aligned_cols=246 Identities=14% Similarity=0.256 Sum_probs=198.8
Q ss_pred EEeeecCCC-CceEEEE---eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059 69 WDLSSCPFD-QRIFSTV---FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (346)
Q Consensus 69 ~~~~~~~~~-~~l~~~~---~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 144 (346)
.++.|||-- .+|++++ +.=...|.+.|-++.. .+.......+ .-.+.+..++|++.....+++++.||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~------~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGS 84 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTD------PKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGS 84 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCC------CCCeEEEEee-ecccceeEeeecCCCcceEEEEecCce
Confidence 467888842 2333322 1112356788888751 1123444444 346789999999999888888888999
Q ss_pred EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCC
Q 019059 145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKK 220 (346)
Q Consensus 145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~ 220 (346)
+++||+..... .....+.|..+|.++.|++..+ .+++++-|++|++||...++.+.++. +| |...+|+|..
T Consensus 85 Lrl~d~~~~s~----Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 85 LRLFDLTMPSK----PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHI 159 (311)
T ss_pred EEEeccCCCCc----chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCC
Confidence 99999664332 2233456888999999998554 46677789999999999999998887 66 9999999999
Q ss_pred CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300 (346)
Q Consensus 221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (346)
++++++++.|+++++||+|..++.+. +..|...+.++.|+...+..|+||+.|+.|++||++.
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~---------------- 222 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN---------------- 222 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhh----------------
Confidence 98999999999999999998776555 8889999999999998889999999999999999998
Q ss_pred ccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
...++..+.+|.-.|+.++|||....+|++++.|-++||||.+
T Consensus 223 --~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 223 --LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred --ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 3678899999999999999999887899999999999999986
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-35 Score=251.08 Aligned_cols=246 Identities=18% Similarity=0.277 Sum_probs=214.5
Q ss_pred eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (346)
Q Consensus 61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 140 (346)
+......|..++|+|..+.++++. ..|.|++||.. -+.++..+..|+++|..++|+|+++ +++++|
T Consensus 5 fEskSsRvKglsFHP~rPwILtsl----HsG~IQlWDYR---------M~tli~rFdeHdGpVRgv~FH~~qp-lFVSGG 70 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSL----HSGVIQLWDYR---------MGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGG 70 (1202)
T ss_pred hhcccccccceecCCCCCEEEEee----cCceeeeehhh---------hhhHHhhhhccCCccceeeecCCCC-eEEecC
Confidence 334567899999999999999964 78899999998 7889999999999999999999999 577779
Q ss_pred cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeC
Q 019059 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYD 217 (346)
Q Consensus 141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~ 217 (346)
+|..|++|+..+.+....+ .+|...|..+.|++.-+.+++++.|.+|+||+..+++++..+. +| |.|..|+
T Consensus 71 DDykIkVWnYk~rrclftL-----~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFh 144 (1202)
T KOG0292|consen 71 DDYKIKVWNYKTRRCLFTL-----LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFH 144 (1202)
T ss_pred CccEEEEEecccceehhhh-----ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccC
Confidence 9999999999876554443 4688899999999999999999999999999999999998887 66 9999999
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCCc----------------------------ceeeecCCCcceEEEEeCCCCCcEEE
Q 019059 218 TKKKHLLVTAADESGIHLWDLRMLKA----------------------------PIQELPGHTHWTWAVCCNPEYDGFIL 269 (346)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~----------------------------~~~~~~~~~~~v~~v~~~~~~~~~l~ 269 (346)
|..+ ++++++-|.+||+||+.-.++ ..+.+.+|...|+-++|+|.- .+|+
T Consensus 145 ptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliV 222 (1202)
T KOG0292|consen 145 PTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIV 222 (1202)
T ss_pred Cccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEE
Confidence 9887 999999999999999752210 124567899999999999999 8999
Q ss_pred EecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 270 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
+|++|..|++|.++.. ..-.+.+..+|...|.++-|+|... ++++.|+|++|+|||+++
T Consensus 223 SG~DDRqVKlWrmnet-----------------KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 223 SGADDRQVKLWRMNET-----------------KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ecCCcceeeEEEeccc-----------------cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccc
Confidence 9999999999999861 1234567789999999999999876 999999999999999975
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-34 Score=210.14 Aligned_cols=241 Identities=17% Similarity=0.203 Sum_probs=205.5
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
..+..|+++|.++.|+-+|++.+++ |+|.+|++|+.- .+.+++++.+|..+|..++.+.|+.. +++
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltc----GsdrtvrLWNp~---------rg~liktYsghG~EVlD~~~s~Dnsk-f~s 76 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTC----GSDRTVRLWNPL---------RGALIKTYSGHGHEVLDAALSSDNSK-FAS 76 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEc----CCCceEEeeccc---------ccceeeeecCCCceeeeccccccccc-ccc
Confidence 4566799999999999999998885 899999999987 78999999999999999999999885 777
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc--eeEE
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH--VRNV 214 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~--v~~~ 214 (346)
++.|..+.+||+++++...++ .+|...|+.++|+.+...+++++-|.++++||-++.. ++..+.... |.++
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~-----rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRF-----RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred CCCCceEEEEEcccCeeeeec-----ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 788999999999998765544 4578899999999999999999999999999998654 555555444 9999
Q ss_pred EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES 294 (346)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 294 (346)
..+.. .+++|+.||+++.||+|. +.....+. ..+|++++|++++ +....++.|+++++.|-.+
T Consensus 152 ~v~~h---eIvaGS~DGtvRtydiR~-G~l~sDy~--g~pit~vs~s~d~-nc~La~~l~stlrLlDk~t---------- 214 (307)
T KOG0316|consen 152 DVAEH---EIVAGSVDGTVRTYDIRK-GTLSSDYF--GHPITSVSFSKDG-NCSLASSLDSTLRLLDKET---------- 214 (307)
T ss_pred Eeccc---EEEeeccCCcEEEEEeec-ceeehhhc--CCcceeEEecCCC-CEEEEeeccceeeecccch----------
Confidence 88642 689999999999999997 44444444 4589999999999 9999999999999999999
Q ss_pred ccCCccccccccccccccccceee--EEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 295 LVESPNQRANSLLNSYSDYEDSVY--GLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++++..+++|...=. ..+++.... .+++|++||.|++|||.
T Consensus 215 ---------GklL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 215 ---------GKLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLV 257 (307)
T ss_pred ---------hHHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEec
Confidence 999999999987544 344555554 89999999999999985
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=244.11 Aligned_cols=246 Identities=20% Similarity=0.353 Sum_probs=206.1
Q ss_pred eeeecc-ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccce--eeeeeeccCCceEEEEeecCCCCc
Q 019059 59 EGLFSH-PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE--RIAALDAHVGKINCVLWWSSGRHD 135 (346)
Q Consensus 59 ~~~~~h-~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~ 135 (346)
..+..| ...|.++.|+|+|+.++++ +.++.+++|+.. ..+ ..+.+.+|...|.+++|+|++++
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~----~~~~~i~~~~~~---------~~~~~~~~~l~~h~~~v~~~~fs~d~~~- 217 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAA----SSDGLIRIWKLE---------GIKSNLLRELSGHTRGVSDVAFSPDGSY- 217 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEc----cCCCcEEEeecc---------cccchhhccccccccceeeeEECCCCcE-
Confidence 334344 6889999999999997775 689999999996 333 56667899999999999999994
Q ss_pred EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---ee
Q 019059 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR 212 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~ 212 (346)
+++++.|++|++||+.......+. ..+|...|++++|+|+++.+++++.|++|++||++++++...+. +| |+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~~----l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLKT----LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEEE----ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceE
Confidence 777788999999999533222222 24688899999999999999999999999999999999999888 55 99
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEEcccCCc-ceeeecCCCcc--eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCC
Q 019059 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE 289 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~--v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 289 (346)
+++|++++. ++++++.|+.|++||+.+... ++..+..+... ++++.|+|++ .+|+++..|+.+++||++.
T Consensus 293 ~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~----- 365 (456)
T KOG0266|consen 293 GLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRS----- 365 (456)
T ss_pred EEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccC-----
Confidence 999999998 899999999999999997332 35666666655 9999999999 9999999999999999998
Q ss_pred CCcccccCCccccccccccccccccce---eeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 290 LPSESLVESPNQRANSLLNSYSDYEDS---VYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+..+..+.+|... +.+...++.+. ++++++.|+.|++|++.
T Consensus 366 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 366 --------------GKSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSS 409 (456)
T ss_pred --------------CcceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCC
Confidence 7888888888764 34445577786 89999999999999986
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3e-33 Score=218.91 Aligned_cols=290 Identities=17% Similarity=0.298 Sum_probs=239.4
Q ss_pred ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (346)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~ 91 (346)
++.+..|+.++..+|...-|+.|+ .++.+.+|++.... ....+.+|-..|..+++|+-.++++++ +.|+
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs----~DrtikIwDlatg~---LkltltGhi~~vr~vavS~rHpYlFs~----gedk 215 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGS----ADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSKRHPYLFSA----GEDK 215 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecC----CCceeEEEEcccCe---EEEeecchhheeeeeeecccCceEEEe----cCCC
Confidence 455678999999999999999884 68899999998853 335677899999999999999999996 7999
Q ss_pred eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (346)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 171 (346)
.|+-||++ ..+.++.+.+|-+.|.|++..|.-. .+++++.|..+++||+++..... ...+|..+|
T Consensus 216 ~VKCwDLe---------~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~-----~l~GH~~~V 280 (460)
T KOG0285|consen 216 QVKCWDLE---------YNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVH-----VLSGHTNPV 280 (460)
T ss_pred eeEEEech---------hhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEE-----EecCCCCcc
Confidence 99999999 6788999999999999999999887 47778899999999999754332 235688899
Q ss_pred EEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059 172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (346)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (346)
..+.+.|-+..+++++.|++|++||++.++...++.... +++++.+|... .|++++.| .|+-|++.. +..+..+.
T Consensus 281 ~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-~fASas~d-nik~w~~p~-g~f~~nls 357 (460)
T KOG0285|consen 281 ASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-LFASASPD-NIKQWKLPE-GEFLQNLS 357 (460)
T ss_pred eeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh-hhhccCCc-cceeccCCc-cchhhccc
Confidence 999999999999999999999999999999888877333 99999999986 89988886 799999987 55677799
Q ss_pred CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcE
Q 019059 250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWI 329 (346)
Q Consensus 250 ~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 329 (346)
+|..-|++++.+.|+ ++++|+++|.+.+||.+++........ ......+ .....|.+.+|...+. .
T Consensus 358 gh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t----------~vqpGSl-~sEagI~as~fDktg~-r 423 (460)
T KOG0285|consen 358 GHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQT----------IVQPGSL-ESEAGIFASCFDKTGS-R 423 (460)
T ss_pred cccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccc----------cccCCcc-ccccceeEEeecccCc-e
Confidence 999999999998886 889999999999999998322111000 0000011 1234689999999987 7
Q ss_pred EEEeecCCeEEEeee
Q 019059 330 FASLSYDGRVRNHML 344 (346)
Q Consensus 330 l~s~~~d~~v~vw~~ 344 (346)
|++|..|.+|++|.-
T Consensus 424 lit~eadKtIk~~ke 438 (460)
T KOG0285|consen 424 LITGEADKTIKMYKE 438 (460)
T ss_pred EEeccCCcceEEEec
Confidence 899999999999963
No 43
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-33 Score=211.39 Aligned_cols=263 Identities=16% Similarity=0.203 Sum_probs=214.8
Q ss_pred eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 139 (346)
.+.+|+.+++.+.++.+|..|+++ +.|.+..||-.. +++.+-++.+|++.|+|++.+-+.++ ++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFsc----aKD~~~~vw~s~---------nGerlGty~GHtGavW~~Did~~s~~-liTG 70 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSC----AKDSTPTVWYSL---------NGERLGTYDGHTGAVWCCDIDWDSKH-LITG 70 (327)
T ss_pred ccccCccccceEEecCCCcEEEEe----cCCCCceEEEec---------CCceeeeecCCCceEEEEEecCCcce-eeec
Confidence 456899999999999999999886 699999999876 68899999999999999999988885 8888
Q ss_pred ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----CCeEEEEEccC-------CCccceee
Q 019059 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFWDLRS-------MGKTNSIE 207 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~-------~~~~~~~~ 207 (346)
+.|.++++||+.++++........ +|..+.|++++..+++... .+.|.++|++. .++...+.
T Consensus 71 SAD~t~kLWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred cccceeEEEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 889999999999998766655433 8999999999988777654 47899999983 34455555
Q ss_pred ccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059 208 HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (346)
Q Consensus 208 ~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~ 285 (346)
... ++.+-|.|-++ .+++|.+||.|.+||+++....+..-+.|...|+.++++|+. .++++++.|.+-++||+++.
T Consensus 145 t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred CCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeeccce
Confidence 333 99999999998 899999999999999998667777778899999999999999 99999999999999999876
Q ss_pred CCCC-----CCcccccCCc----------------------cc---------cccccccccccccceeeEEEeCCCCCcE
Q 019059 286 NHDE-----LPSESLVESP----------------------NQ---------RANSLLNSYSDYEDSVYGLAWSSREPWI 329 (346)
Q Consensus 286 ~~~~-----~~~~~~~~~~----------------------~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 329 (346)
.... .+.......| .. ...+.+..+++|-++|++++|+|+|+ .
T Consensus 223 ~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-s 301 (327)
T KOG0643|consen 223 EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-S 301 (327)
T ss_pred eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-c
Confidence 3210 0000000000 00 12244566789999999999999998 8
Q ss_pred EEEeecCCeEEEeeec
Q 019059 330 FASLSYDGRVRNHMLE 345 (346)
Q Consensus 330 l~s~~~d~~v~vw~~~ 345 (346)
.++|++||.||+...+
T Consensus 302 YsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccCCCCceEEEEEec
Confidence 9999999999998665
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4e-34 Score=213.54 Aligned_cols=244 Identities=18% Similarity=0.284 Sum_probs=210.5
Q ss_pred EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (346)
Q Consensus 58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 137 (346)
+-++.+|.+.|+......+....+++ ..|-+.+|||.- ++..+.++ .|+..|.+++|+.|..+ ++
T Consensus 52 igtfeghkgavw~~~l~~na~~aasa----aadftakvw~a~---------tgdelhsf-~hkhivk~~af~~ds~~-ll 116 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASA----AADFTAKVWDAV---------TGDELHSF-EHKHIVKAVAFSQDSNY-LL 116 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhh----cccchhhhhhhh---------hhhhhhhh-hhhheeeeEEecccchh-hh
Confidence 46789999999999998866555553 689999999987 78888888 79999999999999986 88
Q ss_pred EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEe
Q 019059 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDY 216 (346)
Q Consensus 138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~ 216 (346)
+++.+..++|||++..+. ...+..+|...|..+-|....+.+++++.|++||+||.++++.+..+...+ |+++..
T Consensus 117 tgg~ekllrvfdln~p~A----pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEv 192 (334)
T KOG0278|consen 117 TGGQEKLLRVFDLNRPKA----PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEV 192 (334)
T ss_pred ccchHHHhhhhhccCCCC----CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceee
Confidence 888999999999985443 344456788899999999988999999999999999999999999998777 999999
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059 217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296 (346)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 296 (346)
+++|+ + ++....+.|.+||..+.+ +++.+. -...|.+..++|+. ..+++|++|..++.||..+
T Consensus 193 s~dG~-i-lTia~gssV~Fwdaksf~-~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~T------------ 255 (334)
T KOG0278|consen 193 SQDGR-I-LTIAYGSSVKFWDAKSFG-LLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNT------------ 255 (334)
T ss_pred ccCCC-E-EEEecCceeEEecccccc-ceeecc-CccccccccccCCC-ceEEecCcceEEEEEeccC------------
Confidence 99997 4 444556799999999855 566665 35678899999999 9999999999999999999
Q ss_pred CCcccccccccccc-ccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 297 ESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 297 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++.+..+ ++|.++|.++.|+|+|. +.++||+||+||+|...
T Consensus 256 -------geEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 256 -------GEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTT 297 (334)
T ss_pred -------CceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEec
Confidence 7777775 89999999999999998 99999999999999763
No 45
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=4.2e-33 Score=227.70 Aligned_cols=302 Identities=17% Similarity=0.288 Sum_probs=231.3
Q ss_pred cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEE-eeeec-cccceEEeeecCCCCceEEEEeecC
Q 019059 11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELIC-EGLFS-HPNEIWDLSSCPFDQRIFSTVFSTG 88 (346)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~-h~~~v~~~~~~~~~~~l~~~~~~~~ 88 (346)
.++..++.|+++..++.+.||+.|. .++.+.+|+|......+.. +.+.. ....|++++|++.+..++++.
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs---- 233 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGS----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS---- 233 (641)
T ss_pred eccCCceEEEEeeecCCCceeeecc----ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe----
Confidence 4555689999999999999999985 5789999999875432221 22222 225799999999999888873
Q ss_pred CcceEEEEecCccc-CCCCCcc--ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-cc
Q 019059 89 ESYGAAIWQIPELY-GQLNSPQ--LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QS 164 (346)
Q Consensus 89 ~d~~i~vw~~~~~~-~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~ 164 (346)
.....+|+|-+--. .+..... ..-+...++|...++|.+|+|+.+..+++++.||++++||++..+...++... ..
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 44578888865100 0000000 01122346899999999999999999999999999999999876544444332 23
Q ss_pred CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc-----eeEEEeCCCCCcEEEEecCCCeEEEEE
Q 019059 165 SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWD 237 (346)
Q Consensus 165 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d 237 (346)
.+..-.++.++|+|+++.+++++.||.|.+||..... +...+..+| |+||+|+++|+ .|++=+.|+++++||
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWD 392 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeee
Confidence 3445578999999999999999999999999986543 334444455 99999999998 899999999999999
Q ss_pred cccCCcceeeecCCC--cceEEEEeCCCCCcEEEEecC------CCeEEEEecCCCCCCCCCcccccCCccccccccccc
Q 019059 238 LRMLKAPIQELPGHT--HWTWAVCCNPEYDGFILSAGT------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS 309 (346)
Q Consensus 238 ~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (346)
+|+.++++....+-. .+-+.++|||+. ++|++|.. -|.+.+||..+ .+.+..
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t-------------------~d~v~k 452 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMT-------------------LDTVYK 452 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccc-------------------eeeEEE
Confidence 999998888776543 455788999999 99999864 46899999998 777777
Q ss_pred cccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059 310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 310 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw 342 (346)
+.-....|..+.|+|.-+ .+..++.||.+++|
T Consensus 453 i~i~~aSvv~~~WhpkLN-Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 453 IDISTASVVRCLWHPKLN-QIFAGSGDGTAHVY 484 (641)
T ss_pred ecCCCceEEEEeecchhh-heeeecCCCceEEE
Confidence 776677899999999876 67778889999876
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-33 Score=235.54 Aligned_cols=264 Identities=20% Similarity=0.330 Sum_probs=216.9
Q ss_pred CCCeEEEEEecCCCCeEEEeeeeccccceEEeeec-CCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC-PFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
.++++.+++... ....+.+.|..++|.+++|- |+.++|+++ .+.+.+++|++. ...+ ..+.+
T Consensus 301 aeQnl~l~d~~~---l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA----TNs~~lr~y~~~---------~~~c-~ii~G 363 (775)
T KOG0319|consen 301 AEQNLFLYDEDE---LTIVKQIVGYNDEILDMKFLGPEESHLAVA----TNSPELRLYTLP---------TSYC-QIIPG 363 (775)
T ss_pred ccceEEEEEccc---cEEehhhcCCchhheeeeecCCccceEEEE----eCCCceEEEecC---------CCce-EEEeC
Confidence 466777774443 34557888999999999995 566777776 477899999887 2233 37889
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDL 197 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~ 197 (346)
|++.|.+++...+|. ++++++.|.++++|.++++. ..........+|...|.+++++..+. .+++++.|+++++|++
T Consensus 364 H~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~-~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNC-SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred chhheeeeeecccCc-EEEEecCCceEEEEEecCCc-chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 999999999666664 57777999999999995443 33344444578999999999976554 5778889999999999
Q ss_pred cCCCcc---ce-----eeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc
Q 019059 198 RSMGKT---NS-----IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG 266 (346)
Q Consensus 198 ~~~~~~---~~-----~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 266 (346)
...+.. .. ....| |++++.+|++. +++||+.|++.++|++.+ .....++.+|+..|.+|.|+|.. +
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~d-q 518 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKND-Q 518 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccC-ceEEEEeeCCccceEEEEecccc-c
Confidence 863211 11 12234 99999999998 999999999999999996 56889999999999999999999 9
Q ss_pred EEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 267 FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 267 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.++|+|.|++|+||.+.+ ..+++++.||+..|..+.|-.++. .|++++.||.+++|++.
T Consensus 519 ~laT~SgD~TvKIW~is~-------------------fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSIST-------------------FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIK 577 (775)
T ss_pred eeEeccCCceEEEEEecc-------------------ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEecc
Confidence 999999999999999999 999999999999999999999997 89999999999999985
No 47
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-32 Score=228.24 Aligned_cols=277 Identities=22% Similarity=0.298 Sum_probs=233.7
Q ss_pred eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (346)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw 96 (346)
..+.++...|....++++- .+|.+.+|++... .+.+.+.-..-+|.+..|-+..+.+++ |+.|..|+||
T Consensus 14 dRVKsVd~HPtePw~la~L----ynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~----GsDD~~IrVf 82 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAAL----YNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVT----GSDDMQIRVF 82 (794)
T ss_pred CceeeeecCCCCceEEEee----ecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEE----ecCCceEEEE
Confidence 3466777888887777763 5789999988764 234555556679999999998888888 5799999999
Q ss_pred ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059 97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176 (346)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 176 (346)
++. +++.+..+..|.+-|++++.+|..++ ++++++|-.|++||.+..- .......+|...|.+++|
T Consensus 83 nyn---------t~ekV~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~w----a~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 83 NYN---------TGEKVKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEW----ACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred ecc---------cceeeEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCce----eeeeEEcCcceEEEEEEe
Confidence 998 89999999999999999999999996 8888999999999998543 233445688999999999
Q ss_pred CCCC-CcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCC-cEEEEecCCCeEEEEEcccCCcceeeecCC
Q 019059 177 DPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKK-HLLVTAADESGIHLWDLRMLKAPIQELPGH 251 (346)
Q Consensus 177 ~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 251 (346)
+|.+ +.+++++-|++|++|.+.+..+..++. +| |+|+.|-+.|+ ..+++|++|.+|++||.++ +.+++++.+|
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGH 226 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGH 226 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHHhhcc
Confidence 9965 457788889999999999999999998 77 99999987652 2799999999999999998 7799999999
Q ss_pred CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEE
Q 019059 252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFA 331 (346)
Q Consensus 252 ~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 331 (346)
...|+.+.|+|.- ..+++|++||++|||+..+ .++..++.-.-..|++++-.+.++ .++
T Consensus 227 t~Nvs~v~fhp~l-piiisgsEDGTvriWhs~T-------------------y~lE~tLn~gleRvW~I~~~k~~~-~i~ 285 (794)
T KOG0276|consen 227 TNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKT-------------------YKLEKTLNYGLERVWCIAAHKGDG-KIA 285 (794)
T ss_pred cccceEEEecCCC-cEEEEecCCccEEEecCcc-------------------eehhhhhhcCCceEEEEeecCCCC-eEE
Confidence 9999999999999 8999999999999999998 666677766667799999988776 678
Q ss_pred EeecCCeEEE
Q 019059 332 SLSYDGRVRN 341 (346)
Q Consensus 332 s~~~d~~v~v 341 (346)
.|.++|.|.+
T Consensus 286 vG~Deg~i~v 295 (794)
T KOG0276|consen 286 VGFDEGSVTV 295 (794)
T ss_pred EeccCCcEEE
Confidence 8877776643
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.5e-34 Score=222.40 Aligned_cols=260 Identities=16% Similarity=0.284 Sum_probs=212.0
Q ss_pred CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 119 (346)
.++.|.+|+..+ ......+.+|.+.|.|+.|.. +.+++ |++|.+|+|||+. +++++.++-.|
T Consensus 215 rDnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd~--rviis----GSSDsTvrvWDv~---------tge~l~tlihH 276 (499)
T KOG0281|consen 215 RDNTIKIWDKNS---LECLKILTGHTGSVLCLQYDE--RVIVS----GSSDSTVRVWDVN---------TGEPLNTLIHH 276 (499)
T ss_pred ccCceEEecccc---HHHHHhhhcCCCcEEeeeccc--eEEEe----cCCCceEEEEecc---------CCchhhHHhhh
Confidence 567777775554 234567889999999999964 34444 6899999999999 88999999999
Q ss_pred CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (346)
.+.|..+.|+.. .+++++.|.++.+||+.... ......-..+|...|+.+.|+ .+++++++.|.+|++|++.+
T Consensus 277 ceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 277 CEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST 349 (499)
T ss_pred cceeEEEEEeCC---EEEEecCCceeEEEeccCch--HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc
Confidence 999999999853 47888999999999998654 223333456788899999996 56999999999999999999
Q ss_pred CCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059 200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
++.++++. +| |.|+.+. ++ ++++|+.|.+|++||+.. +.+++.+++|+.-|.++.|.. +.+++|+.||+
T Consensus 350 ~efvRtl~-gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvRciRFd~---krIVSGaYDGk 421 (499)
T KOG0281|consen 350 CEFVRTLN-GHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFDN---KRIVSGAYDGK 421 (499)
T ss_pred eeeehhhh-cccccceehhcc--Ce-EEEecCCCceEEEEeccc-cHHHHHHhchHHhhhheeecC---ceeeeccccce
Confidence 99999987 77 7777664 44 899999999999999997 779999999999999999976 67999999999
Q ss_pred EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
|+|||+..+...... ...-++..+..|++.|..+.|.. ..+++++.|.+|.|||..
T Consensus 422 ikvWdl~aaldpra~----------~~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 422 IKVWDLQAALDPRAP----------ASTLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILIWDFL 477 (499)
T ss_pred EEEEecccccCCccc----------ccchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEEEEcC
Confidence 999999973211110 01235677778999999999965 478999999999999964
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=238.62 Aligned_cols=279 Identities=19% Similarity=0.354 Sum_probs=232.4
Q ss_pred EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ 97 (346)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~ 97 (346)
.+..+++.|....++++ -+.+.|.+|++--.. ....+.+|.++|..++|+|+.+.+++ ||.|..|+||+
T Consensus 11 RvKglsFHP~rPwILts----lHsG~IQlWDYRM~t---li~rFdeHdGpVRgv~FH~~qplFVS----GGDDykIkVWn 79 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTS----LHSGVIQLWDYRMGT---LIDRFDEHDGPVRGVDFHPTQPLFVS----GGDDYKIKVWN 79 (1202)
T ss_pred cccceecCCCCCEEEEe----ecCceeeeehhhhhh---HHhhhhccCCccceeeecCCCCeEEe----cCCccEEEEEe
Confidence 45667788888777776 467889999876532 44778899999999999999988887 58999999999
Q ss_pred cCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC
Q 019059 98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD 177 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 177 (346)
+. +.+++.++.+|-+-|..+.|++.-++ ++++++|.+|+||+..+.+....+ .+|...|.+.+|+
T Consensus 80 Yk---------~rrclftL~GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~iavl-----tGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 80 YK---------TRRCLFTLLGHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAVL-----TGHNHYVMCAQFH 144 (1202)
T ss_pred cc---------cceehhhhccccceeEEeeccCCCce-EEEccCCCeEEEEeccCCceEEEE-----ecCceEEEeeccC
Confidence 98 78999999999999999999999996 777789999999999976654333 4688899999999
Q ss_pred CCCCcEEEEecCCeEEEEEccCCC----------------------------ccceeeccc---eeEEEeCCCCCcEEEE
Q 019059 178 PHDVNAVAATCESSVQFWDLRSMG----------------------------KTNSIEHAH---VRNVDYDTKKKHLLVT 226 (346)
Q Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~----------------------------~~~~~~~~~---v~~~~~~~~~~~~l~~ 226 (346)
|....+++++-|.+|++||+..-+ .++.+-.+| |+-++|+|.-+ ++++
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVS 223 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVS 223 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEe
Confidence 999999999999999999986311 012222456 99999999998 9999
Q ss_pred ecCCCeEEEEEcccCCc-ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccc
Q 019059 227 AADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS 305 (346)
Q Consensus 227 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (346)
|++|..|++|.+...+. .+.+..+|.+.|+++-|+|.. .++++.|+|++|+|||+.. ..
T Consensus 224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~k-------------------Rt 283 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTK-------------------RT 283 (1202)
T ss_pred cCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEeccc-------------------cc
Confidence 99999999999875332 456678999999999999999 9999999999999999998 78
Q ss_pred cccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.++++....+..+.++-+|..+ +++ ++.|+-+.||.++
T Consensus 284 ~v~tfrrendRFW~laahP~lN-LfA-AgHDsGm~VFkle 321 (1202)
T KOG0292|consen 284 SVQTFRRENDRFWILAAHPELN-LFA-AGHDSGMIVFKLE 321 (1202)
T ss_pred ceeeeeccCCeEEEEEecCCcc-eee-eecCCceEEEEEc
Confidence 8888877667789999999987 555 4556667777664
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.7e-32 Score=222.93 Aligned_cols=243 Identities=23% Similarity=0.378 Sum_probs=205.7
Q ss_pred eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 139 (346)
.+.+|.++|.+++|+|+++.++++ +.++.+.+|++. ..+....+..|...+..+.|+|+++. ++++
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~----~~~g~i~i~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 69 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATG----SGDGTIKVWDLE---------TGELLRTLKGHTGPVRDVAASADGTY-LASG 69 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEe----ecCcEEEEEEee---------CCCcEEEEecCCcceeEEEECCCCCE-EEEE
Confidence 455899999999999998888875 579999999998 45566777889999999999999964 6777
Q ss_pred ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEe
Q 019059 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDY 216 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~ 216 (346)
+.++.|++|++.+++....+. .|...+.++.|+|++..+++++.++.|++||+++++....+. .+ +.+++|
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~ 143 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLT-----GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAF 143 (289)
T ss_pred cCCCeEEEEEcCcccceEEEe-----ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEE
Confidence 779999999998754333332 345589999999997777777779999999999887777666 33 999999
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059 217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296 (346)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 296 (346)
+|++. ++++++.++.|++||++. ..++..+..|...+.++.|+|++ ..+++++.|+.|++||++.
T Consensus 144 ~~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~------------ 208 (289)
T cd00200 144 SPDGT-FVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLST------------ 208 (289)
T ss_pred cCcCC-EEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCC------------
Confidence 99977 788888799999999986 55777888898999999999999 8899999899999999997
Q ss_pred CCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++.+..+..|...+.++.|+|++. ++++++.|+.|++|++.
T Consensus 209 -------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 209 -------GKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLR 249 (289)
T ss_pred -------CceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcC
Confidence 777788878888999999999975 88888889999999985
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.8e-32 Score=252.21 Aligned_cols=256 Identities=16% Similarity=0.162 Sum_probs=201.8
Q ss_pred eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (346)
Q Consensus 61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 140 (346)
+..|.+.|.+++|+|++..++++ +.|+.|+||++........ ....+...+ .+...+.+++|++.....+++++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latg----g~D~~I~iwd~~~~~~~~~-~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATA----GVNKKIKIFECESIIKDGR-DIHYPVVEL-ASRSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEE----eCCCEEEEEECCccccccc-ccccceEEe-cccCceeeEEeccCCCCEEEEEe
Confidence 45689999999999999888775 7999999999762110000 001122333 34568999999986554577778
Q ss_pred cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCC
Q 019059 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDT 218 (346)
Q Consensus 141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~ 218 (346)
.|+.|++||+.+++.... ..+|...|.+++|+| ++..|++++.|+.|++||++++.....+.... +.++.|++
T Consensus 553 ~Dg~v~lWd~~~~~~~~~-----~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~ 627 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTE-----MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPS 627 (793)
T ss_pred CCCeEEEEECCCCeEEEE-----ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence 899999999986543222 245777999999997 67889999999999999999988877776333 99999965
Q ss_pred -CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059 219 -KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (346)
Q Consensus 219 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 297 (346)
++. .+++|+.|+.|++||+++...++..+.+|...|.++.|. ++ .+|++++.|++|++||++.....
T Consensus 628 ~~g~-~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~--------- 695 (793)
T PLN00181 628 ESGR-SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISG--------- 695 (793)
T ss_pred CCCC-EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccc---------
Confidence 565 899999999999999997555677888999999999997 56 78999999999999999851100
Q ss_pred CccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
....++..+.+|...+..++|+|+++ +|++|+.|+.|++|+.
T Consensus 696 ----~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 696 ----INETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHK 737 (793)
T ss_pred ----cCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEEC
Confidence 01356778889999999999999997 9999999999999985
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3e-31 Score=200.30 Aligned_cols=247 Identities=18% Similarity=0.342 Sum_probs=199.3
Q ss_pred EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCCC
Q 019059 56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRH 134 (346)
Q Consensus 56 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 134 (346)
+....+.+|++.++.++|+|-...++++ +|.|+.|++|+... .....+...+ .+|+..|++++|+|.|++
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAs---cg~Dk~vriw~~~~------~~s~~ck~vld~~hkrsVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILAS---CGTDKAVRIWSTSS------GDSWTCKTVLDDGHKRSVRSVAWSPHGRY 75 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEe---ecCCceEEEEecCC------CCcEEEEEeccccchheeeeeeecCCCcE
Confidence 4557778999999999999973345554 48999999999872 1134444444 478999999999999994
Q ss_pred cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc---cceeeccc-
Q 019059 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK---TNSIEHAH- 210 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~- 210 (346)
+++++.|.++.||.-..+.-. . .....+|...|.+++|+++|.+|++++.|..|-||.+..+.. ...++ +|
T Consensus 76 -La~aSFD~t~~Iw~k~~~efe--c-v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~Ht 150 (312)
T KOG0645|consen 76 -LASASFDATVVIWKKEDGEFE--C-VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHT 150 (312)
T ss_pred -EEEeeccceEEEeecCCCcee--E-EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-ccc
Confidence 677788999999987644321 1 233567899999999999999999999999999999986543 33333 56
Q ss_pred --eeEEEeCCCCCcEEEEecCCCeEEEEEccc--CCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059 211 --VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286 (346)
Q Consensus 211 --v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 286 (346)
|..+.|+|... +|++++.|.+|++|+-.. .-.++.++.+|...|.+++|+|.| ..|++++.|++++||...+
T Consensus 151 qDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~-- 226 (312)
T KOG0645|consen 151 QDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYT-- 226 (312)
T ss_pred ccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeecc--
Confidence 99999999888 999999999999998652 124788999999999999999999 9999999999999998665
Q ss_pred CCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 287 HDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
.- -..|+..++.+.|. ++ .|++++.|+.|++|.-
T Consensus 227 -----------------~~----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 227 -----------------DL----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKE 260 (312)
T ss_pred -----------------Cc----chhcccceEeeeec-cc--ceEeccCCCEEEEEEe
Confidence 11 12367789999999 44 7999999999999864
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.3e-33 Score=226.49 Aligned_cols=249 Identities=12% Similarity=0.238 Sum_probs=206.7
Q ss_pred EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (346)
Q Consensus 58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 137 (346)
...+.+|...|.++.|.|...+|+.. +|.|+.|+||++.. ...+++++.+|..+|.+++|+++|.. ++
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS---~gmD~~vklW~vy~--------~~~~lrtf~gH~k~Vrd~~~s~~g~~-fL 274 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLS---GGMDGLVKLWNVYD--------DRRCLRTFKGHRKPVRDASFNNCGTS-FL 274 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEe---cCCCceEEEEEEec--------CcceehhhhcchhhhhhhhccccCCe-ee
Confidence 36788999999999999966666665 59999999999973 58999999999999999999999996 88
Q ss_pred EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceeeccc---eeE
Q 019059 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN 213 (346)
Q Consensus 138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~ 213 (346)
+++.|+.|++||.++++....+.... .++++.|+|++ +.+++|+.|+.|+.||+++++.+..+. .| |..
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~~~~------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~ 347 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFHLDK------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILD 347 (503)
T ss_pred eeecceeeeeeccccceEEEEEecCC------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheee
Confidence 88899999999999998766665433 78999999999 557777889999999999999888776 44 999
Q ss_pred EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059 214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS 292 (346)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 292 (346)
+.|-+++. .+++.++|+.+++|+.+.+- ++... ..+.....++..+|++ .++++-+.|+.|.++.+...
T Consensus 348 i~F~~~g~-rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~------- 417 (503)
T KOG0282|consen 348 ITFVDEGR-RFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPP------- 417 (503)
T ss_pred eEEccCCc-eEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCCCC-CeehhhccCceEEEEecccc-------
Confidence 99999998 89999999999999998733 33332 2334566789999999 99999999999999987641
Q ss_pred ccccCCcccccccccccccccc--ceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 293 ESLVESPNQRANSLLNSYSDYE--DSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
-.......+.+|. +.-..+.|||||. +|++|+.||.+.+||..
T Consensus 418 ---------~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 418 ---------FRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWK 462 (503)
T ss_pred ---------cccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeech
Confidence 0123345566775 3457799999997 99999999999999853
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=218.19 Aligned_cols=228 Identities=19% Similarity=0.345 Sum_probs=194.7
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE 143 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 143 (346)
....|.|+++. +..+++ |..|.+|+|||.. ...+++.+.+|++.|.|+.|... ++++|+.|.
T Consensus 196 ~skgVYClQYD--D~kiVS----GlrDnTikiWD~n---------~~~c~~~L~GHtGSVLCLqyd~r---viisGSSDs 257 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVS----GLRDNTIKIWDKN---------SLECLKILTGHTGSVLCLQYDER---VIVSGSSDS 257 (499)
T ss_pred cCCceEEEEec--chhhhc----ccccCceEEeccc---------cHHHHHhhhcCCCcEEeeeccce---EEEecCCCc
Confidence 34678999885 556766 5799999999988 78899999999999999999643 577888899
Q ss_pred eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc--ceeeccc---eeEEEeCC
Q 019059 144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIEHAH---VRNVDYDT 218 (346)
Q Consensus 144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~---v~~~~~~~ 218 (346)
+|++||.++++....+. .|...|..+.|+ ..++++++.|.++.+||+...... +..-.+| |+.+.|+.
T Consensus 258 TvrvWDv~tge~l~tli-----hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ 330 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLI-----HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 330 (499)
T ss_pred eEEEEeccCCchhhHHh-----hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence 99999999988665554 366789999997 478999999999999999977632 2222366 99999964
Q ss_pred CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCC
Q 019059 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES 298 (346)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 298 (346)
+ ++++++.|.+|++|++.+ ...++++.+|...|.|+.+ .+ +++++|+.|.+|++||+..
T Consensus 331 --k-yIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQY--r~-rlvVSGSSDntIRlwdi~~-------------- 389 (499)
T KOG0281|consen 331 --K-YIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQY--RD-RLVVSGSSDNTIRLWDIEC-------------- 389 (499)
T ss_pred --c-eEEEecCCceEEEEeccc-eeeehhhhcccccceehhc--cC-eEEEecCCCceEEEEeccc--------------
Confidence 3 899999999999999998 6689999999999999876 45 8999999999999999999
Q ss_pred ccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 299 PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+.++..+.||..-|.++.|.. + .+++|+.||+|++||+.
T Consensus 390 -----G~cLRvLeGHEeLvRciRFd~--k-rIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 390 -----GACLRVLEGHEELVRCIRFDN--K-RIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred -----cHHHHHHhchHHhhhheeecC--c-eeeeccccceEEEEecc
Confidence 999999999999999999974 3 68999999999999985
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.5e-32 Score=203.73 Aligned_cols=247 Identities=15% Similarity=0.245 Sum_probs=210.9
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
+.+.+|...|.+++|+-+|..|++ |+.|+++.+|+++. .....-...++|.+.|-.++|+|....++++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~las----gs~dktv~v~n~e~-------~r~~~~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLAS----GSFDKTVSVWNLER-------DRFRKELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeee----cccCCceEEEEecc-------hhhhhhhcccCCCcchhhheeCCCCCcceEE
Confidence 556789999999999999999998 47999999999982 1122223457899999999999998888888
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeC
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYD 217 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~ 217 (346)
++.|..|++||++.++....+.... .-.-+.|+|+|.+++++..|..|.+.|.++.+.+...+... +..++|+
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~ 156 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN 156 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeec
Confidence 8889999999999887666655433 44567899999999999999999999999988777666444 9999999
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (346)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 297 (346)
-++. +++.....|.|.|..... -+++..++.|.....||.|+|+| ++||+|+.|..+.+||+..
T Consensus 157 ~~nd-~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~E------------- 220 (313)
T KOG1407|consen 157 NSND-LFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDE------------- 220 (313)
T ss_pred CCCC-EEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhH-------------
Confidence 7776 666666679999999887 44899999999999999999999 9999999999999999998
Q ss_pred CccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
--++..+..+.=+|+.+.|+-+|+ +||++|+|..|-|-+++
T Consensus 221 ------LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 221 ------LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVE 261 (313)
T ss_pred ------hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecc
Confidence 788888888888999999999997 99999999998776553
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-30 Score=213.25 Aligned_cols=288 Identities=16% Similarity=0.229 Sum_probs=235.8
Q ss_pred ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcc
Q 019059 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESY 91 (346)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~ 91 (346)
++.-+.+|.++.++.++.|+++..- +.++..+++- |+.++ ..-.+.+|...|+++.|-|..++-+++ +++|+
T Consensus 99 f~v~aG~I~Di~Wd~ds~RI~avGE--Grerfg~~F~-~DSG~--SvGei~GhSr~ins~~~KpsRPfRi~T---~sdDn 170 (603)
T KOG0318|consen 99 FQVLAGPIKDISWDFDSKRIAAVGE--GRERFGHVFL-WDSGN--SVGEITGHSRRINSVDFKPSRPFRIAT---GSDDN 170 (603)
T ss_pred eeecccccccceeCCCCcEEEEEec--CccceeEEEE-ecCCC--ccceeeccceeEeeeeccCCCceEEEe---ccCCC
Confidence 3344568889999999999987532 2333222222 23222 225567999999999999999988877 59999
Q ss_pred eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (346)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 171 (346)
.|.+|+=+ +.+...+++.|..-|.|+.|+|||.. +++.+.||.|.+||=.+++....+.. ..+|...|
T Consensus 171 ~v~ffeGP---------PFKFk~s~r~HskFV~~VRysPDG~~-Fat~gsDgki~iyDGktge~vg~l~~--~~aHkGsI 238 (603)
T KOG0318|consen 171 TVAFFEGP---------PFKFKSSFREHSKFVNCVRYSPDGSR-FATAGSDGKIYIYDGKTGEKVGELED--SDAHKGSI 238 (603)
T ss_pred eEEEeeCC---------CeeeeecccccccceeeEEECCCCCe-EEEecCCccEEEEcCCCccEEEEecC--CCCccccE
Confidence 99999966 78888899999999999999999994 66668899999999988876665543 45788899
Q ss_pred EEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee
Q 019059 172 SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ 246 (346)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 246 (346)
++++|+||+..+++++.|.+++|||..+.+++.++..+. .-.+-|- .+ .|++.+.+|.|.+++..... +++
T Consensus 239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd--~lItVSl~G~in~ln~~d~~-~~~ 314 (603)
T KOG0318|consen 239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KD--HLITVSLSGTINYLNPSDPS-VLK 314 (603)
T ss_pred EEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CC--eEEEEEcCcEEEEecccCCC-hhh
Confidence 999999999999999999999999999999888887544 3444555 33 68888999999999999855 899
Q ss_pred eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-ccccceeeEEEeCCC
Q 019059 247 ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSR 325 (346)
Q Consensus 247 ~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~ 325 (346)
.+.+|...|+++..+|++ .+|++|+.||.|.-|+..+ +..-... .+|...|.+++-+..
T Consensus 315 ~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~-------------------g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 315 VISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGS-------------------GTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred eecccccceeEEEEcCCC-CEEEeeccCceEEEEecCC-------------------ccccccccccccceEEEEeecCC
Confidence 999999999999999999 9999999999999999998 4443322 679999999999886
Q ss_pred CCcEEEEeecCCeEEEeeec
Q 019059 326 EPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 326 ~~~~l~s~~~d~~v~vw~~~ 345 (346)
+. +++++.|.++++.++.
T Consensus 375 ~~--~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 375 GE--LFTIGWDDTLRVISLK 392 (603)
T ss_pred Cc--EEEEecCCeEEEEecc
Confidence 64 7899999999998764
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=231.17 Aligned_cols=251 Identities=16% Similarity=0.203 Sum_probs=200.2
Q ss_pred eee-ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc----------------------------cC-------
Q 019059 60 GLF-SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL----------------------------YG------- 103 (346)
Q Consensus 60 ~~~-~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~----------------------------~~------- 103 (346)
.+. .|.+.|+++.||++|++|+++ |.|+.|+||.+-+. ..
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsa----GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASA----GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeec----CCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 344 799999999999999999995 89999999998750 00
Q ss_pred -----C-----------CCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059 104 -----Q-----------LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (346)
Q Consensus 104 -----~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 167 (346)
. ......++++.+.+|.+.|..+.|+.++- |++++.|.+|++|++....+...+. |
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f--LLSSSMDKTVRLWh~~~~~CL~~F~------H 408 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF--LLSSSMDKTVRLWHPGRKECLKVFS------H 408 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCCe--eEeccccccEEeecCCCcceeeEEe------c
Confidence 0 00112355677889999999999998764 8888999999999998665443332 6
Q ss_pred ceeeEEEEeCC-CCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce
Q 019059 168 LHYLSGGAWDP-HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI 245 (346)
Q Consensus 168 ~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 245 (346)
...|++++|+| |.+++++|+-|+.|+||++...+.+.-..... |++++|.|+|+ ..++|+.+|.+++|+.+..+ ..
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk-~~ 486 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLK-LV 486 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCe-EE
Confidence 77999999999 67889999999999999999776654443223 99999999998 88999999999999988633 33
Q ss_pred eeec---------CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc-
Q 019059 246 QELP---------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED- 315 (346)
Q Consensus 246 ~~~~---------~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 315 (346)
..+. .|. .|+.+.|.|..+..+++.+.|..|||||.+. ..++..++++..
T Consensus 487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-------------------~~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-------------------KDLVHKFKGFRNT 546 (712)
T ss_pred EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-------------------hhhhhhhcccccC
Confidence 2221 123 7999999998866688888899999999987 788888887543
Q ss_pred -eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 316 -SVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 316 -~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.-....|+.+|+ .|+++++|..|++|+++
T Consensus 547 ~SQ~~Asfs~Dgk-~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 547 SSQISASFSSDGK-HIVSASEDSWVYIWKND 576 (712)
T ss_pred CcceeeeEccCCC-EEEEeecCceEEEEeCC
Confidence 235678999998 89999999999999974
No 58
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-31 Score=222.38 Aligned_cols=259 Identities=17% Similarity=0.232 Sum_probs=215.4
Q ss_pred CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-
Q 019059 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA- 118 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~- 118 (346)
....+++|+-....-... ..-+.+.|+++.|+++|.+|+++ -.+|.|.|||.. +.+.+..+..
T Consensus 195 lg~~vylW~~~s~~v~~l---~~~~~~~vtSv~ws~~G~~LavG----~~~g~v~iwD~~---------~~k~~~~~~~~ 258 (484)
T KOG0305|consen 195 LGQSVYLWSASSGSVTEL---CSFGEELVTSVKWSPDGSHLAVG----TSDGTVQIWDVK---------EQKKTRTLRGS 258 (484)
T ss_pred ecceEEEEecCCCceEEe---EecCCCceEEEEECCCCCEEEEe----ecCCeEEEEehh---------hccccccccCC
Confidence 445788888776541111 11238899999999999999996 489999999998 6677778888
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (346)
|...|-+++|+.. .+.+++.++.|..+|++..+.... ...+|...|..++|++++.++++++.|+.+.|||..
T Consensus 259 h~~rvg~laW~~~---~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 259 HASRVGSLAWNSS---VLSSGSRDGKILNHDVRISQHVVS----TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred cCceeEEEeccCc---eEEEecCCCcEEEEEEecchhhhh----hhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 9999999999832 467778899999999997665444 245688899999999999999999999999999998
Q ss_pred CCCccceeeccc---eeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe-c
Q 019059 199 SMGKTNSIEHAH---VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA-G 272 (346)
Q Consensus 199 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~-~ 272 (346)
...++..+. +| |..++|+|-...+||+|+ .|+.|++||..+ +..+..+. ....|.+|.|++...+++.+- -
T Consensus 332 ~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 332 SPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD-TGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred CccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc-cCCceeeEEEcCCCCEEEEecCC
Confidence 777777776 56 999999999888999865 689999999997 55566554 468899999999984444443 3
Q ss_pred CCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 273 TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 273 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
.++.|.||+..+ .+++..+.+|...|..++++|+|. .+++++.|.++++|++
T Consensus 409 s~n~i~lw~~ps-------------------~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 409 SENQITLWKYPS-------------------MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNL 460 (484)
T ss_pred CCCcEEEEeccc-------------------cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccc
Confidence 477999999998 788999999999999999999997 8999999999999987
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-31 Score=225.39 Aligned_cols=263 Identities=14% Similarity=0.195 Sum_probs=221.1
Q ss_pred CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 119 (346)
..+.+.+|+..... .++++ . .+.+.+..|.|.+++++.+ ...|.+.++|+. ....+.++++|
T Consensus 392 a~~SikiWn~~t~k---ciRTi-~-~~y~l~~~Fvpgd~~Iv~G----~k~Gel~vfdla---------S~~l~Eti~AH 453 (888)
T KOG0306|consen 392 AGESIKIWNRDTLK---CIRTI-T-CGYILASKFVPGDRYIVLG----TKNGELQVFDLA---------SASLVETIRAH 453 (888)
T ss_pred CCCcEEEEEccCcc---eeEEe-c-cccEEEEEecCCCceEEEe----ccCCceEEEEee---------hhhhhhhhhcc
Confidence 45677777766532 12222 2 2378899999988888884 688999999998 67788888899
Q ss_pred CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC-----CCCc--eeeecccCCCceeeEEEEeCCCCCcEEEEecCCeE
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS-----NKNA--QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV 192 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~-----~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 192 (346)
++.|..++.+||++. +++++.|.+|++||..-- .+.. .+.....-.....+.+++++||+++|+++--|.++
T Consensus 454 dgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTV 532 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTV 532 (888)
T ss_pred ccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeE
Confidence 999999999999997 788888999999997521 1111 01000111224489999999999999999999999
Q ss_pred EEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEE
Q 019059 193 QFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 269 (346)
Q Consensus 193 ~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 269 (346)
++|-+.+.+-...+. +| |.|+..+||+. +++||+.|+.|++|-+.- +.+-+.+.+|...|.++.|.|.. .++.
T Consensus 533 kVyflDtlKFflsLY-GHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~-~~FF 608 (888)
T KOG0306|consen 533 KVYFLDTLKFFLSLY-GHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKT-HLFF 608 (888)
T ss_pred EEEEecceeeeeeec-ccccceeEEeccCCcC-eEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccc-eeEE
Confidence 999999999888887 77 99999999998 999999999999999885 66888999999999999999988 9999
Q ss_pred EecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 270 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++|.|+.|+-||-.. .+.++.+.+|...|++++.+|+|. +++++|.|.+||+|.-+
T Consensus 609 t~gKD~kvKqWDg~k-------------------Fe~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 609 TCGKDGKVKQWDGEK-------------------FEEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERT 664 (888)
T ss_pred EecCcceEEeechhh-------------------hhhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeecc
Confidence 999999999999998 899999999999999999999997 99999999999999753
No 60
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=4.5e-31 Score=208.00 Aligned_cols=281 Identities=19% Similarity=0.344 Sum_probs=211.5
Q ss_pred eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC-------CCCccceeeeeeeccCCceEEEE
Q 019059 55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ-------LNSPQLERIAALDAHVGKINCVL 127 (346)
Q Consensus 55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~ 127 (346)
+........|.+.++.+.-++.++..++++ -+..|.|+||++...... ......+++.++.+|...=++++
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~as--wse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCAS--WSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred ccccccccccccccceeeecccCCcceeee--ecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence 333455678999999999999876555554 367899999999754222 12235678889999999999999
Q ss_pred eecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccce-
Q 019059 128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNS- 205 (346)
Q Consensus 128 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~- 205 (346)
|||-...-++++---+.|++|...++ ...+......+|...|..++|+|.... +++++.|++|+|||+|.+.....
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g--~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTG--SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred cccccccccccCccccceEeeeeccC--ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 99955443555533689999999874 355555566779999999999997665 55666799999999998843322
Q ss_pred eeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC--CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059 206 IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML--KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280 (346)
Q Consensus 206 ~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iw 280 (346)
+...| |+-|.|+..-+ +|++|+.||+++|||+|+. ++|+..|+-|..+|++|.|+|.....|++++.|.+|.||
T Consensus 297 ~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 297 STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 22355 99999999988 9999999999999999964 468889999999999999999887899999999999999
Q ss_pred ecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059 281 LVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRN 341 (346)
Q Consensus 281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~v 341 (346)
|+..-..++.........-.....++++..++.. .+..+.|+++-+.++++.+.||.-.+
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-e~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-EVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchh-HhhhheeccCCCCeEEEecccceeEE
Confidence 9987433222221111111122345566555543 48999999998889999999995433
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-30 Score=195.14 Aligned_cols=279 Identities=16% Similarity=0.213 Sum_probs=228.2
Q ss_pred eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (346)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw 96 (346)
..+.++.++-++.+++.|. .+..+.+|.+... .........+|.+.|-.++|+|..+.+++++ +.|.+|++|
T Consensus 21 ~~v~Sv~wn~~g~~lasgs----~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~ata---s~dk~ir~w 92 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGS----FDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATA---SGDKTIRIW 92 (313)
T ss_pred hcceEEEEcccCceeeecc----cCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEe---cCCceEEEE
Confidence 3455666777899999885 4678889988886 4445566789999999999999888777764 788899999
Q ss_pred ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059 97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176 (346)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 176 (346)
|+. ..++...+....+. .-+.|+|+|.+ ++++..|..|...|.++.+....... ...+..+.|
T Consensus 93 d~r---------~~k~~~~i~~~~en-i~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~------~~e~ne~~w 155 (313)
T KOG1407|consen 93 DIR---------SGKCTARIETKGEN-INITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQF------KFEVNEISW 155 (313)
T ss_pred Eec---------cCcEEEEeeccCcc-eEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcc------cceeeeeee
Confidence 999 78888877554444 46789999997 77778899999999986553333322 237888999
Q ss_pred CCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc
Q 019059 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH 253 (346)
Q Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 253 (346)
+-++..++.....|.|.|.....-+++..+. +| +.||+|+|+|+ .|++|+.|-.+.+||+.. -.+++.+..+.-
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~E-LiC~R~isRldw 232 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGR-YFATGSADALVSLWDVDE-LICERCISRLDW 232 (313)
T ss_pred cCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCCc-eEeeccccceeeccChhH-hhhheeeccccC
Confidence 9777777777778999999999999999888 66 88999999999 899999999999999987 447888999999
Q ss_pred ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEe
Q 019059 254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL 333 (346)
Q Consensus 254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 333 (346)
+|..+.|+.+| ++||++|+|..|-|=++++ +..+..++ +.++...++|+|... +||-+
T Consensus 233 pVRTlSFS~dg-~~lASaSEDh~IDIA~vet-------------------Gd~~~eI~-~~~~t~tVAWHPk~~-LLAyA 290 (313)
T KOG1407|consen 233 PVRTLSFSHDG-RMLASASEDHFIDIAEVET-------------------GDRVWEIP-CEGPTFTVAWHPKRP-LLAYA 290 (313)
T ss_pred ceEEEEeccCc-ceeeccCccceEEeEeccc-------------------CCeEEEee-ccCCceeEEecCCCc-eeeEE
Confidence 99999999999 9999999999999999998 78777775 567789999999886 77776
Q ss_pred ecC---------CeEEEeeec
Q 019059 334 SYD---------GRVRNHMLE 345 (346)
Q Consensus 334 ~~d---------~~v~vw~~~ 345 (346)
..| |.|++|-+.
T Consensus 291 ~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 291 CDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ecCCCCccccccceeEEecCC
Confidence 654 567887653
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=218.25 Aligned_cols=259 Identities=17% Similarity=0.252 Sum_probs=214.7
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
+.+..|.+|+....+. -....+.+..+.|+++.|.+++.+++++ +.|+.+++|+++ ..+...++.+
T Consensus 194 g~Dr~Ik~W~v~~~k~-~~~~tLaGs~g~it~~d~d~~~~~~iAa----s~d~~~r~Wnvd---------~~r~~~TLsG 259 (459)
T KOG0288|consen 194 GSDRIIKLWNVLGEKS-ELISTLAGSLGNITSIDFDSDNKHVIAA----SNDKNLRLWNVD---------SLRLRHTLSG 259 (459)
T ss_pred chhhhhhhhhcccchh-hhhhhhhccCCCcceeeecCCCceEEee----cCCCceeeeecc---------chhhhhhhcc
Confidence 4677888888887653 3346777888999999999999999986 799999999999 7899999999
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (346)
|++.|+++.|...... ++.++.|.+|++||+........+.... .+..+..+ ...++++..|++|++||.+
T Consensus 260 HtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S------~cnDI~~~--~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGS------QCNDIVCS--ISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred cccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccc------cccceEec--ceeeeecccccceEEEecc
Confidence 9999999999887765 7777889999999999766555554432 56666665 3557777789999999999
Q ss_pred CCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC----CcceEEEEeCCCCCcEEEEecC
Q 019059 199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH----THWTWAVCCNPEYDGFILSAGT 273 (346)
Q Consensus 199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~v~~~~~~~~~l~s~~~ 273 (346)
+..+...+..+. |+++..++++. -+.+.+.|.++.+.|++. ......+... ....+.+.|||++ .|+++||.
T Consensus 331 s~~~~~sv~~gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~ 407 (459)
T KOG0288|consen 331 SADKTRSVPLGGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSA 407 (459)
T ss_pred CCceeeEeecCcceeeEeeccCCe-EEeeecCCCceeeeeccc-ccEEEEeeccccccccccceeEECCCC-ceeeeccC
Confidence 999999888555 99999999998 677779999999999997 4455555431 2347889999999 99999999
Q ss_pred CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc--eeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 274 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
||.|+||++.+ +++.+.+..... .|++++|+|.|. .|++++.++.+.+|.
T Consensus 408 dgsv~iW~v~t-------------------gKlE~~l~~s~s~~aI~s~~W~~sG~-~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 408 DGSVYIWSVFT-------------------GKLEKVLSLSTSNAAITSLSWNPSGS-GLLSADKQKAVTLWT 459 (459)
T ss_pred CCcEEEEEccC-------------------ceEEEEeccCCCCcceEEEEEcCCCc-hhhcccCCcceEecC
Confidence 99999999998 787777765444 499999999997 788999999999994
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-30 Score=191.90 Aligned_cols=275 Identities=14% Similarity=0.193 Sum_probs=215.3
Q ss_pred eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (346)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw 96 (346)
.++..+..+.++.-.+. .+.+..+.+|+- .....+++..+|..+|.+++.+.|+..+++ +|.|..+.+|
T Consensus 18 gaV~avryN~dGnY~lt----cGsdrtvrLWNp---~rg~liktYsghG~EVlD~~~s~Dnskf~s----~GgDk~v~vw 86 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLT----CGSDRTVRLWNP---LRGALIKTYSGHGHEVLDAALSSDNSKFAS----CGGDKAVQVW 86 (307)
T ss_pred cceEEEEEccCCCEEEE----cCCCceEEeecc---cccceeeeecCCCceeeecccccccccccc----CCCCceEEEE
Confidence 34445555555544332 346667766643 334566889999999999999999999888 4899999999
Q ss_pred ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059 97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176 (346)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 176 (346)
|+. +++..+.+.+|.+.|+.++|+.+.. ++++++.|..+++||.++........... ....|.++..
T Consensus 87 DV~---------TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQilde---a~D~V~Si~v 153 (307)
T KOG0316|consen 87 DVN---------TGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDE---AKDGVSSIDV 153 (307)
T ss_pred Ecc---------cCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhh---hcCceeEEEe
Confidence 999 8999999999999999999998887 46666889999999998654322222222 3447888887
Q ss_pred CCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcce
Q 019059 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWT 255 (346)
Q Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 255 (346)
+ +..+++|+.||+++.||++.|+...... ++ |+++.|+++++ ..+.++-|+++++.|-.+ ++.+..+++|.+.-
T Consensus 154 ~--~heIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~n-c~La~~l~stlrLlDk~t-GklL~sYkGhkn~e 228 (307)
T KOG0316|consen 154 A--EHEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGN-CSLASSLDSTLRLLDKET-GKLLKSYKGHKNME 228 (307)
T ss_pred c--ccEEEeeccCCcEEEEEeecceeehhhc-CCcceeEEecCCCC-EEEEeeccceeeecccch-hHHHHHhcccccce
Confidence 5 4678899999999999999998776665 66 99999999998 788889999999999887 66889999998765
Q ss_pred EE--EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccce-eeEEEeCCCCCcEEEE
Q 019059 256 WA--VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDS-VYGLAWSSREPWIFAS 332 (346)
Q Consensus 256 ~~--v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s 332 (346)
.. .+++... ..+++|++||.|.+||+.. ...+..+..+... |.+++++|.-..++ +
T Consensus 229 ykldc~l~qsd-thV~sgSEDG~Vy~wdLvd-------------------~~~~sk~~~~~~v~v~dl~~hp~~~~f~-~ 287 (307)
T KOG0316|consen 229 YKLDCCLNQSD-THVFSGSEDGKVYFWDLVD-------------------ETQISKLSVVSTVIVTDLSCHPTMDDFI-T 287 (307)
T ss_pred eeeeeeecccc-eeEEeccCCceEEEEEecc-------------------ceeeeeeccCCceeEEeeecccCcccee-E
Confidence 43 3455555 8999999999999999998 7888888888877 89999999876444 4
Q ss_pred eecCCeEEEe
Q 019059 333 LSYDGRVRNH 342 (346)
Q Consensus 333 ~~~d~~v~vw 342 (346)
+. ++.+..|
T Consensus 288 A~-~~~~~~~ 296 (307)
T KOG0316|consen 288 AT-GHGDLFW 296 (307)
T ss_pred ec-CCceece
Confidence 43 3445555
No 64
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=8.2e-30 Score=222.73 Aligned_cols=229 Identities=16% Similarity=0.177 Sum_probs=164.5
Q ss_pred eEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc
Q 019059 43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK 122 (346)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (346)
.+.++.++..........+.+|.+.|.+++|+|+...++++ ++.|+.|+||++....... .....++..+.+|...
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLAS---gS~DgtIrIWDi~t~~~~~-~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILAS---GSEDLTIRVWEIPHNDESV-KEIKDPQCILKGHKKK 127 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEE---EeCCCeEEEEECCCCCccc-cccccceEEeecCCCc
Confidence 34444444433333456778999999999999974444444 4799999999997311000 0011345567899999
Q ss_pred eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc
Q 019059 123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK 202 (346)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (346)
|.+++|+|++..++++++.|+.|++||+.+++....+. +...+.+++|+|+|..+++++.|+.|++||+++++.
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence 99999999998756677889999999999765433221 234799999999999999999999999999999988
Q ss_pred cceeeccc---e-----eEEEeCCCCCcEEEEecCC----CeEEEEEcccCCcceeeecCC--CcceEEEEeCCCCCcEE
Q 019059 203 TNSIEHAH---V-----RNVDYDTKKKHLLVTAADE----SGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPEYDGFI 268 (346)
Q Consensus 203 ~~~~~~~~---v-----~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l 268 (346)
+..+. +| + ....|++++. .+++++.| +.|++||+++...++..+..+ .+.+......+++ .++
T Consensus 202 i~tl~-gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg-~l~ 278 (568)
T PTZ00420 202 ASSFH-IHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG-LIY 278 (568)
T ss_pred EEEEe-cccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC-CEE
Confidence 77765 44 2 2334568887 66666655 379999999766677665432 2333333334556 899
Q ss_pred EEecCCCeEEEEecCC
Q 019059 269 LSAGTDSTVNLWLVST 284 (346)
Q Consensus 269 ~s~~~d~~i~iwd~~~ 284 (346)
++|+.|+.|++|++..
T Consensus 279 lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEECCCeEEEEEccC
Confidence 9999999999999986
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.9e-31 Score=203.60 Aligned_cols=280 Identities=19% Similarity=0.199 Sum_probs=209.8
Q ss_pred CCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc------cC---CCCCccceeeeeeeccCCc
Q 019059 52 GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL------YG---QLNSPQLERIAALDAHVGK 122 (346)
Q Consensus 52 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~------~~---~~~~~~~~~~~~~~~~~~~ 122 (346)
+........+..|+.++.+.+|+|||..+++ |+.|..|+|.|++.. .+ .........++++..|.++
T Consensus 99 e~~~yEt~ylt~HK~~cR~aafs~DG~lvAT----GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de 174 (430)
T KOG0640|consen 99 EPSEYETKYLTSHKSPCRAAAFSPDGSLVAT----GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE 174 (430)
T ss_pred CCcccceEEEeecccceeeeeeCCCCcEEEc----cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc
Confidence 3344455677889999999999999987766 689999999999722 10 1111123567889999999
Q ss_pred eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc
Q 019059 123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK 202 (346)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (346)
|+++.|+|... ++++++.|+.|++||+.+........... ...+|.++.|+|.|.++++|.....+++||+++-++
T Consensus 175 vn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~q---d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 175 VNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQ---DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred ccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhh---ccceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence 99999999988 57777899999999997543211111111 233899999999999999999999999999999987
Q ss_pred cceeec--cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec-CCC-cceEEEEeCCCCCcEEEEecCCC
Q 019059 203 TNSIEH--AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHT-HWTWAVCCNPEYDGFILSAGTDS 275 (346)
Q Consensus 203 ~~~~~~--~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-~~v~~v~~~~~~~~~l~s~~~d~ 275 (346)
...-.+ +| |+++.+++.++ +.++++.||.|++||--+ .+++.++. .|. ..|.+..|..++ +++++.+.|.
T Consensus 251 fvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS 327 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDS 327 (430)
T ss_pred eeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCC-eEEeecCCcc
Confidence 655442 23 99999999998 999999999999999776 55777775 354 578999999999 9999999999
Q ss_pred eEEEEecCCCCCCCC-------------------Cccc----------ccCCcccccccc-ccccccccceeeEEEeCCC
Q 019059 276 TVNLWLVSTSNHDEL-------------------PSES----------LVESPNQRANSL-LNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 276 ~i~iwd~~~~~~~~~-------------------~~~~----------~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~ 325 (346)
.+++|.+.++..-.. ..+. ..-.+....... ...-.+|.+.++.+.-+|.
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC
Confidence 999999987521000 0000 000001111111 1122479999999999999
Q ss_pred CCcEEEEeecCCeEEEee
Q 019059 326 EPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 326 ~~~~l~s~~~d~~v~vw~ 343 (346)
++ -+.+|+.|.++|+|-
T Consensus 408 ~p-~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 408 EP-AFMTCSDDFRARFWY 424 (430)
T ss_pred CC-ceeeecccceeeeee
Confidence 98 899999999999994
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-31 Score=209.61 Aligned_cols=280 Identities=16% Similarity=0.220 Sum_probs=218.4
Q ss_pred cccceeeEeeeccCCCCc-ceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCC
Q 019059 11 GLKYQARCISDVKADTDH-TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE 89 (346)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~ 89 (346)
.|..+...+..+..+|.. ..++.| +.+|++.+|++..-+ ....+..|.+.|..|++.. ..++++ |+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSG----s~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~--~~~~tv----gd 127 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASG----SCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQ--TSFFTV----GD 127 (433)
T ss_pred hccccccccchhhcCcchhhhhhcc----ccCceEEEEehhhhh---hhheeecccCceeeEEecc--cceEEe----cC
Confidence 344444556666666655 344444 468999999998743 4567788999999999987 556664 79
Q ss_pred cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCce
Q 019059 90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH 169 (346)
Q Consensus 90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 169 (346)
|.+|+.|.++ +.+++++ ..++.+..++-+..+. .++++| ..|.|||.........+.... .
T Consensus 128 DKtvK~wk~~----------~~p~~ti-lg~s~~~gIdh~~~~~-~FaTcG--e~i~IWD~~R~~Pv~smswG~-----D 188 (433)
T KOG0268|consen 128 DKTVKQWKID----------GPPLHTI-LGKSVYLGIDHHRKNS-VFATCG--EQIDIWDEQRDNPVSSMSWGA-----D 188 (433)
T ss_pred Ccceeeeecc----------CCcceee-eccccccccccccccc-cccccC--ceeeecccccCCccceeecCC-----C
Confidence 9999999987 3466666 3356677777766665 244444 589999998766555555433 2
Q ss_pred eeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059 170 YLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 247 (346)
.+.++.|+|....+++++ .|+.|.+||+++.+++..+...- -+.|+|+|+.- .|++|++|..++.||+|....++..
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeaf-nF~~a~ED~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAF-NFVAANEDHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCcccc-ceeeccccccceehhhhhhcccchh
Confidence 789999999877665555 89999999999999988877555 89999999664 8999999999999999999999999
Q ss_pred ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc-cccceeeEEEeCCCC
Q 019059 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLAWSSRE 326 (346)
Q Consensus 248 ~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 326 (346)
+.+|.+.|.++.|||.| .-|++||.|.+|+||..+. +.....+. ..-..|.++.||.|.
T Consensus 268 ~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~-------------------~~SRdiYhtkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 268 HKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNH-------------------GHSRDIYHTKRMQHVFCVKYSMDS 327 (433)
T ss_pred hcccceeEEEeccCCCc-chhccccccceEEEeecCC-------------------CcchhhhhHhhhheeeEEEEeccc
Confidence 99999999999999999 9999999999999999987 32222111 112349999999999
Q ss_pred CcEEEEeecCCeEEEeee
Q 019059 327 PWIFASLSYDGRVRNHML 344 (346)
Q Consensus 327 ~~~l~s~~~d~~v~vw~~ 344 (346)
+ ++++||.|+.||+|.-
T Consensus 328 k-yi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 328 K-YIISGSDDGNVRLWKA 344 (433)
T ss_pred c-EEEecCCCcceeeeec
Confidence 7 9999999999999963
No 67
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.2e-30 Score=228.15 Aligned_cols=300 Identities=16% Similarity=0.219 Sum_probs=231.2
Q ss_pred ccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCC---------CeEEEeeeeccccceEEeeecCCCCceEE
Q 019059 12 LKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG---------TELICEGLFSHPNEIWDLSSCPFDQRIFS 82 (346)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 82 (346)
+......+-++...+++.+|+.|... .++.+.+|+..+.. .+....+...|.+.|+|+.|+|||++|++
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~--~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQV--LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCcc--ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 44455668888999999999998643 34445578765421 12233556789999999999999999998
Q ss_pred EEeecCCcceEEEEecCcc---------cCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC
Q 019059 83 TVFSTGESYGAAIWQIPEL---------YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS 153 (346)
Q Consensus 83 ~~~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~ 153 (346)
|++|+.|.||..... .+..+...++....+.+|+..|..++|+|++. ++++++.|++|.+|+..+-
T Consensus 87 ----GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 87 ----GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred ----ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccc
Confidence 589999999998731 22344556788899999999999999999988 3666688999999999876
Q ss_pred CCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--------eeEEEeCCCCCcEEE
Q 019059 154 NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--------VRNVDYDTKKKHLLV 225 (346)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~ 225 (346)
+.... ..+|...|.++.|.|-|+++++-+.|++|++|++.+-...+.+.... ...+.|+|||. +|+
T Consensus 162 ~~~~v-----l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~la 235 (942)
T KOG0973|consen 162 ELLKV-----LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLA 235 (942)
T ss_pred eeeee-----eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eec
Confidence 32222 24577899999999999999999999999999977655544443211 89999999999 666
Q ss_pred EecC----CCeEEEEEcccCCcceeeecCCCcceEEEEeCCC--------C----Cc----EEEEecCCCeEEEEecCCC
Q 019059 226 TAAD----ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE--------Y----DG----FILSAGTDSTVNLWLVSTS 285 (346)
Q Consensus 226 ~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~--------~----~~----~l~s~~~d~~i~iwd~~~~ 285 (346)
+... -..+.|.+-.+ -..-..+-+|..++.+++|+|. | +. .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~- 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL- 313 (942)
T ss_pred chhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC-
Confidence 6432 23677877654 3456678899999999999982 1 11 678999999999999987
Q ss_pred CCCCCCcccccCCcccccccccccccc-ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 286 NHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.+++..... ....|.+++|+|||- .|.++|.||+|.+..++
T Consensus 314 ------------------~RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 314 ------------------PRPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFE 355 (942)
T ss_pred ------------------CCchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcc
Confidence 555554432 355699999999996 88999999999998875
No 68
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=1.7e-29 Score=220.72 Aligned_cols=228 Identities=16% Similarity=0.181 Sum_probs=173.0
Q ss_pred cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce-e--eecc
Q 019059 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ-V--QSKQ 163 (346)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~-~--~~~~ 163 (346)
||.++.|++|+.. ...++..+.+|.+.|.+++|+|+...++++++.|+.|++||+.++..... . ....
T Consensus 50 GG~~gvI~L~~~~---------r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQM---------RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred CCceeEEEeeecC---------CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence 6778899999987 44677788999999999999998554677889999999999986432111 0 0112
Q ss_pred cCCCceeeEEEEeCCCCCcE-EEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059 164 SSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (346)
Q Consensus 164 ~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (346)
..+|...|.+++|+|++..+ ++++.|+.|++||+++++....+.... |.+++|+|+|. +|++++.|+.|++||+++
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs- 198 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK- 198 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC-
Confidence 34677799999999998875 577889999999999998776665333 99999999998 889999999999999998
Q ss_pred CcceeeecCCCcceEE-----EEeCCCCCcEEEEecCCC----eEEEEecCCCCCCCCCcccccCCccccccccccccc-
Q 019059 242 KAPIQELPGHTHWTWA-----VCCNPEYDGFILSAGTDS----TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS- 311 (346)
Q Consensus 242 ~~~~~~~~~~~~~v~~-----v~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (346)
...+..+.+|.+.+.. ..|++++ .+|++++.|+ +|+|||++. ...++....
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~------------------~~~pl~~~~l 259 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKN------------------TTSALVTMSI 259 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCC------------------CCCceEEEEe
Confidence 5577888899876543 3356888 7888877664 799999995 134444433
Q ss_pred -cccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 312 -DYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 312 -~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.+.+.+......+++. ++++|+.|+.|++|++.
T Consensus 260 d~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 260 DNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHS 293 (568)
T ss_pred cCCccceEEeeeCCCCC-EEEEEECCCeEEEEEcc
Confidence 2333333333344464 88999999999999974
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=3e-30 Score=203.52 Aligned_cols=250 Identities=18% Similarity=0.325 Sum_probs=202.5
Q ss_pred eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEE-eeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELIC-EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v 95 (346)
+.+.++..++...+|+.+ +.++.+++|.+......+.. ..-.||...|-+++..+++..++++ +.|..|.+
T Consensus 148 k~v~~v~~n~~~~~fvsa----s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg----S~D~~lki 219 (423)
T KOG0313|consen 148 KSVAWVIKNSSSCLFVSA----SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG----SWDTMLKI 219 (423)
T ss_pred eeeEEEecCCccceEEEe----cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee----cccceeee
Confidence 344455566666677765 47889999999876543332 2234999999999999999988884 79999999
Q ss_pred EecCccc----------------CCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCcee
Q 019059 96 WQIPELY----------------GQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV 159 (346)
Q Consensus 96 w~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~ 159 (346)
|+.+... .........++.++.+|.++|.++.|++.+. +++++.|.+|+.||+.+++....+
T Consensus 220 Ws~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v--~yS~SwDHTIk~WDletg~~~~~~ 297 (423)
T KOG0313|consen 220 WSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATV--IYSVSWDHTIKVWDLETGGLKSTL 297 (423)
T ss_pred cccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCc--eEeecccceEEEEEeecccceeee
Confidence 9933210 1123345677888999999999999998444 888899999999999998876666
Q ss_pred eecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc---eeEEEeCCCCCcEEEEecCCCeEE
Q 019059 160 QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIH 234 (346)
Q Consensus 160 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~ 234 (346)
.... .++++..+|....|++++.|..|++||.+++. .+..-..+| |.++.|+|...+.|++|+.|++++
T Consensus 298 ~~~k------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 298 TTNK------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred ecCc------ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 5543 89999999999999999999999999999875 233223467 999999999999999999999999
Q ss_pred EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+||+|....|+..+.+|...|.++.|+.. .++++|+.|++|+|+.-..
T Consensus 372 lWDvRS~k~plydI~~h~DKvl~vdW~~~--~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 372 LWDVRSTKAPLYDIAGHNDKVLSVDWNEG--GLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEEeccCCCcceeeccCCceEEEEeccCC--ceEEeccCcceEEEecccc
Confidence 99999977799999999999999999864 5899999999999987653
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.2e-28 Score=181.94 Aligned_cols=294 Identities=16% Similarity=0.215 Sum_probs=221.6
Q ss_pred eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCC------------CCeEEEeeeeccccceEEeeecCCCCceEE
Q 019059 15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG------------GTELICEGLFSHPNEIWDLSSCPFDQRIFS 82 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 82 (346)
..+++.++.+.|.+.-+++|+.+ ..++++.++.. .+.+.++.-..|.+.|.|.+|+|.|+.+++
T Consensus 31 dsqairav~fhp~g~lyavgsns----kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNS----KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred chhheeeEEecCCCceEEeccCC----ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 45677888899999999998643 34555544421 234555666789999999999999987777
Q ss_pred EEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC---CCCcEEEE-ecCCeEEEEEcCCCCCCce
Q 019059 83 TVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS---GRHDKLVS-IDEENIFLWSLDCSNKNAQ 158 (346)
Q Consensus 83 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~-~~d~~i~vwd~~~~~~~~~ 158 (346)
|++|.+|++..+..... +.. ..-..+.-|++.|..++|..+ +..+++++ ..|..|++-|...++....
T Consensus 107 ----gsndk~ik~l~fn~dt~---~~~-g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 107 ----GSNDKTIKVLPFNADTC---NAT-GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred ----cCCCceEEEEecccccc---ccc-CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 58999999987763211 111 222356779999999999643 33334333 3467777777776654332
Q ss_pred eeecccCCCceeeEEE-EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---------eeEEEeCCCCCcEEEEec
Q 019059 159 VQSKQSSGMLHYLSGG-AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDTKKKHLLVTAA 228 (346)
Q Consensus 159 ~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~ 228 (346)
+ .+|...|.++ .| ++-.+++++.|.+|++||++-..++.++.... |.+++..|.|+ +|++|.
T Consensus 179 ~-----sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~ 250 (350)
T KOG0641|consen 179 L-----SGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGH 250 (350)
T ss_pred e-----cCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeecc
Confidence 2 3455556555 45 47788999999999999999888887665221 99999999999 999999
Q ss_pred CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccc
Q 019059 229 DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN 308 (346)
Q Consensus 229 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (346)
.|....+||+|- +++++.+..|...|.|+.|+|.. .++.+++.|..|++=|++.. . ...-++.
T Consensus 251 ~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgd---l------------a~el~~~ 313 (350)
T KOG0641|consen 251 ADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGD---L------------AHELPIM 313 (350)
T ss_pred CCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccc---h------------hhcCceE
Confidence 999999999996 77999999999999999999998 99999999999999999840 0 0012233
Q ss_pred ccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
....|...+..+.|+|..- -+++.+.|.++.+|.+.+
T Consensus 314 vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALNG 350 (350)
T ss_pred EEEeccCceEEEEecCccc-eeeeccCcceEEEeccCC
Confidence 4456888888999999874 789999999999998764
No 71
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.1e-30 Score=208.87 Aligned_cols=278 Identities=17% Similarity=0.282 Sum_probs=208.6
Q ss_pred cCCCCeEEEeeeeccc--cceEEeeecCC--CC--------ceEEEEee-cCCcceEEEEecCcc--cC-----------
Q 019059 50 SSGGTELICEGLFSHP--NEIWDLSSCPF--DQ--------RIFSTVFS-TGESYGAAIWQIPEL--YG----------- 103 (346)
Q Consensus 50 ~~~~~~~~~~~~~~h~--~~v~~~~~~~~--~~--------~l~~~~~~-~~~d~~i~vw~~~~~--~~----------- 103 (346)
|..+.+..+..+..|. -+-..+.|-|+ .. +|+.+..+ ++....+.|=++.-+ ..
T Consensus 23 WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~ 102 (422)
T KOG0264|consen 23 WKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEER 102 (422)
T ss_pred HhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCcccccccccccccc
Confidence 4555555666666666 56677889886 22 45554433 446777777764311 00
Q ss_pred -C-----CCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceee-----ecccCCCceeeE
Q 019059 104 -Q-----LNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQ-----SKQSSGMLHYLS 172 (346)
Q Consensus 104 -~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~~~~~v~ 172 (346)
+ ......+... .-.|.+.|+.+.+.|+...++++.+..+.|.|||..+........ .....+|...-+
T Consensus 103 ~e~~g~~~~~~~v~i~~-~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~ 181 (422)
T KOG0264|consen 103 GEFGGFGAVSGKVEISQ-KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGY 181 (422)
T ss_pred cccCCccccccceEEEE-eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccc
Confidence 0 0001112222 237899999999999999744444778999999987643322211 012345666788
Q ss_pred EEEeCCCCC-cEEEEecCCeEEEEEccCCCc------cceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEccc-C
Q 019059 173 GGAWDPHDV-NAVAATCESSVQFWDLRSMGK------TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRM-L 241 (346)
Q Consensus 173 ~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~ 241 (346)
+++|++... .+++++.|+.|++||+..... .+....+| |..++|++....+|++++.|+.+.|||+|. .
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 899998654 477888899999999986543 23333466 999999999988999999999999999995 3
Q ss_pred CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEE
Q 019059 242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA 321 (346)
Q Consensus 242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 321 (346)
.++.+...+|..+|+|++|+|.+..+||+||.|++|++||+|. ..+++.++.+|...|..|.
T Consensus 262 ~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn------------------L~~~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 262 SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN------------------LNKPLHTFEGHEDEVFQVE 323 (422)
T ss_pred CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh------------------cccCceeccCCCcceEEEE
Confidence 5577778899999999999999989999999999999999998 3678999999999999999
Q ss_pred eCCCCCcEEEEeecCCeEEEeeecC
Q 019059 322 WSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 322 ~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
|+|+...+||+++.|+++.|||+.+
T Consensus 324 WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 324 WSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred eCCCCCceeEecccCCcEEEEeccc
Confidence 9999888999999999999999864
No 72
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=9.2e-30 Score=221.35 Aligned_cols=233 Identities=16% Similarity=0.230 Sum_probs=175.8
Q ss_pred eeeccccceEEeeecC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 60 GLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 60 ~~~~h~~~v~~~~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
.+.+|.+.|.+++|+| ++..|+++ +.|++|++||+..... ......++..+.+|...|.+++|+|++..++++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSg----S~DgtIkIWdi~~~~~--~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTA----SEDGTIMGWGIPEEGL--TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEE----eCCCEEEEEecCCCcc--ccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 4678999999999999 56666664 7999999999973210 001124567788999999999999987666778
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc----eeEE
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNV 214 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----v~~~ 214 (346)
++.|+.|++||+.++..... ..+|...|.+++|+|++..+++++.|+.|++||+++++.+..+. +| ...+
T Consensus 144 gs~DgtVrIWDl~tg~~~~~-----l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~ 217 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVEV-----IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRC 217 (493)
T ss_pred EeCCCEEEEEECCCCeEEEE-----EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEE
Confidence 88899999999987653222 23466789999999999999999999999999999998877665 44 5577
Q ss_pred EeCCCCCcEEEE-e---cCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEec-CCCeEEEEecCCCCCC
Q 019059 215 DYDTKKKHLLVT-A---ADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAG-TDSTVNLWLVSTSNHD 288 (346)
Q Consensus 215 ~~~~~~~~~l~~-~---~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~ 288 (346)
.|.+++. .+++ | +.|+.|++||+++...++.....+. ..+....|++++ .+|++++ .|+.|++||+..
T Consensus 218 ~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~---- 291 (493)
T PTZ00421 218 LWAKRKD-LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMN---- 291 (493)
T ss_pred EEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeC----
Confidence 8998887 4554 3 3578999999998666666554333 456667799999 7888777 599999999997
Q ss_pred CCCcccccCCcccccccccccccc-ccceeeEEEeCCC
Q 019059 289 ELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSR 325 (346)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 325 (346)
++++..... +..++..++|.|.
T Consensus 292 ---------------~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 292 ---------------ERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ---------------CceEEEeeccCCCCCcceEeccc
Confidence 444443322 3345667777763
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.9e-31 Score=203.94 Aligned_cols=278 Identities=13% Similarity=0.213 Sum_probs=237.9
Q ss_pred eeccCCCCcceEEEeecccCCCCeEEEEEecCCC-----CeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEE
Q 019059 20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG-----TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAA 94 (346)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~ 94 (346)
.+..++|+++-++.|+ .++.+-+|++-..+ +......+.-+..+|.|+.|+.|...+++ |+.||.|+
T Consensus 217 EcA~FSPDgqyLvsgS----vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs----GsqDGkIK 288 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGS----VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS----GSQDGKIK 288 (508)
T ss_pred hheeeCCCCceEeecc----ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc----cCcCCcEE
Confidence 3445788998888874 57889999987643 22233456668899999999999888777 58999999
Q ss_pred EEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059 95 IWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG 173 (346)
Q Consensus 95 vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 173 (346)
||.+. ++++++.+. .|...|+|+.|+.|+.+ +++++.|.++++.-+.+++...+ ..+|...|+.
T Consensus 289 vWri~---------tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKE-----frGHsSyvn~ 353 (508)
T KOG0275|consen 289 VWRIE---------TGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKE-----FRGHSSYVNE 353 (508)
T ss_pred EEEEe---------cchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHH-----hcCccccccc
Confidence 99999 899999986 89999999999999997 77778899999999998775443 4578889999
Q ss_pred EEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059 174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (346)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (346)
..|.++|.++++++.||+|++|+..+.+++.++.... |+++-.-|.++..++++....+|.+.++. ++.++.+.
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q--GQvVrsfs 431 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFS 431 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc--ceEEeeec
Confidence 9999999999999999999999999999999888554 88988888887788999999999999987 56777776
Q ss_pred CC---CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC
Q 019059 250 GH---THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE 326 (346)
Q Consensus 250 ~~---~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 326 (346)
.. .+...+...+|.| .++++.++|+.++.|...+ +++-.++.-|...|-.++-+|..
T Consensus 432 SGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~s-------------------G~LE~tl~VhEkdvIGl~HHPHq 491 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLS-------------------GKLERTLPVHEKDVIGLTHHPHQ 491 (508)
T ss_pred cCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeec-------------------CceeeeeecccccccccccCccc
Confidence 32 2455666799999 9999999999999999998 88889999999999999999988
Q ss_pred CcEEEEeecCCeEEEee
Q 019059 327 PWIFASLSYDGRVRNHM 343 (346)
Q Consensus 327 ~~~l~s~~~d~~v~vw~ 343 (346)
+ ++|+-++||.+++|.
T Consensus 492 N-llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 492 N-LLASYSEDGLLKLWK 507 (508)
T ss_pred c-hhhhhcccchhhhcC
Confidence 6 999999999999995
No 74
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.4e-29 Score=215.72 Aligned_cols=252 Identities=13% Similarity=0.156 Sum_probs=177.8
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC-CCCccce---eeeeeeccCCceEEEEeec-CCCCcEEEEe
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ-LNSPQLE---RIAALDAHVGKINCVLWWS-SGRHDKLVSI 140 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~---~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 140 (346)
..|.....++++..++++ +.+.....|+......- .....++ ....+.+|.+.|.+++|+| ++. ++++++
T Consensus 21 ~~i~~~~~~~d~~~~~~~----n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-~LaSgS 95 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIAC----NDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-KLFTAS 95 (493)
T ss_pred eccccccccCCCCCcEeE----CCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-EEEEEe
Confidence 445555566665666554 45555556654310000 0000111 1124678999999999999 555 577788
Q ss_pred cCCeEEEEEcCCCCCCce--eeecccCCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059 141 DEENIFLWSLDCSNKNAQ--VQSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (346)
Q Consensus 141 ~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~ 214 (346)
.|+.|++||+.+...... .......+|...|.+++|+|++ ..|++++.|+.|++||+++++....+. .| |.++
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sl 174 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSL 174 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEE
Confidence 999999999976432111 1112235678899999999986 578888999999999999998777765 44 9999
Q ss_pred EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcc-eEEEEeCCCCCcEEEEec----CCCeEEEEecCCCCCCC
Q 019059 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW-TWAVCCNPEYDGFILSAG----TDSTVNLWLVSTSNHDE 289 (346)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~v~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~ 289 (346)
+|+|++. +|++++.|+.|++||+++ ...+..+.+|... +..+.|.+++ ..+++++ .|+.|++||++..
T Consensus 175 a~spdG~-lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~---- 247 (493)
T PTZ00421 175 EWNLDGS-LLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKM---- 247 (493)
T ss_pred EEECCCC-EEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCC----
Confidence 9999998 999999999999999998 5577788888765 4567899988 5665543 4799999999861
Q ss_pred CCcccccCCccccccccccccccc-cceeeEEEeCCCCCcEEEEee-cCCeEEEeeec
Q 019059 290 LPSESLVESPNQRANSLLNSYSDY-EDSVYGLAWSSREPWIFASLS-YDGRVRNHMLE 345 (346)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~-~d~~v~vw~~~ 345 (346)
..++.....+ ...+....|++++. +|++++ .|+.|++|++.
T Consensus 248 --------------~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 248 --------------ASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELM 290 (493)
T ss_pred --------------CCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEee
Confidence 2233333222 33466678999997 666666 59999999986
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=201.77 Aligned_cols=281 Identities=19% Similarity=0.261 Sum_probs=224.5
Q ss_pred eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (346)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (346)
+.++...+.....++| +.+..+.+++.+.+. ....+.||...|+.+.++|+...++++ +.|..|+||..
T Consensus 222 i~ald~~~s~~~ilTG----G~d~~av~~d~~s~q---~l~~~~Gh~kki~~v~~~~~~~~v~~a----Sad~~i~vws~ 290 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTG----GEDKTAVLFDKPSNQ---ILATLKGHTKKITSVKFHKDLDTVITA----SADEIIRVWSV 290 (506)
T ss_pred eeEEeecCCCCcceec----CCCCceEEEecchhh---hhhhccCcceEEEEEEeccchhheeec----CCcceEEeecc
Confidence 3344444443344443 455566677666542 446788999999999999988877774 78999999998
Q ss_pred CcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC
Q 019059 99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP 178 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 178 (346)
. ..........|.++|+.+..+|.|.| +++++.|+...+.|++++.......... ..-.+++.+|+|
T Consensus 291 ~---------~~s~~~~~~~h~~~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~---s~v~~ts~~fHp 357 (506)
T KOG0289|consen 291 P---------LSSEPTSSRPHEEPVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQLTVVSDET---SDVEYTSAAFHP 357 (506)
T ss_pred c---------cccCccccccccccceeeeeccCCcE-EEEecCCceEEEEEccCCcEEEEEeecc---ccceeEEeeEcC
Confidence 7 34455667799999999999999998 7777889999999999887655544321 223689999999
Q ss_pred CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-CCcc
Q 019059 179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-HTHW 254 (346)
Q Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~ 254 (346)
||..+.++..|+.|++||+..+..+..|. +| |..++|+.+| |+++++.+|+.|++||+|+.. ...++.. ...+
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~-n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK-NFKTIQLDEKKE 434 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc-ccceeecccccc
Confidence 99999999999999999999999888887 57 9999999999 499999999999999999854 4555543 2347
Q ss_pred eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEee
Q 019059 255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLS 334 (346)
Q Consensus 255 v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 334 (346)
+.++.|.+.| .+|+.++.|=+|++++-.+ ..+.++..+..|.+..+.+.|....+ +++++|
T Consensus 435 v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~-----------------k~W~~~~~~~~~sg~st~v~Fg~~aq-~l~s~s 495 (506)
T KOG0289|consen 435 VNSLSFDQSG-TYLGIAGSDLQVYICKKKT-----------------KSWTEIKELADHSGLSTGVRFGEHAQ-YLASTS 495 (506)
T ss_pred ceeEEEcCCC-CeEEeecceeEEEEEeccc-----------------ccceeeehhhhcccccceeeecccce-EEeecc
Confidence 9999999999 9999998887777776544 23778888888998899999999886 999999
Q ss_pred cCCeEEEeeec
Q 019059 335 YDGRVRNHMLE 345 (346)
Q Consensus 335 ~d~~v~vw~~~ 345 (346)
.|..++++.++
T Consensus 496 md~~l~~~a~~ 506 (506)
T KOG0289|consen 496 MDAILRLYALT 506 (506)
T ss_pred chhheEEeecC
Confidence 99999998763
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.6e-30 Score=206.77 Aligned_cols=242 Identities=17% Similarity=0.260 Sum_probs=205.8
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
+.+......|.++.|..||+.+++ |+..|.|+|+|+. +...++.+.+|+.+|..+.|+|++..+++.
T Consensus 62 k~~srFk~~v~s~~fR~DG~Llaa----GD~sG~V~vfD~k---------~r~iLR~~~ah~apv~~~~f~~~d~t~l~s 128 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAA----GDESGHVKVFDMK---------SRVILRQLYAHQAPVHVTKFSPQDNTMLVS 128 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEc----cCCcCcEEEeccc---------cHHHHHHHhhccCceeEEEecccCCeEEEe
Confidence 445667789999999999987777 5899999999976 566788899999999999999999987777
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCC-Cccceeeccc-eeEEE
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSM-GKTNSIEHAH-VRNVD 215 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~-v~~~~ 215 (346)
+++|+.+++||+.+.. . .....+|...|.+.+|+|... .+++|+.||.|++||++.. ..+.++..++ |..+.
T Consensus 129 ~sDd~v~k~~d~s~a~----v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl 203 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTAY----V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVL 203 (487)
T ss_pred cCCCceEEEEEcCCcE----E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEE
Confidence 7889999999998654 1 334467888999999999766 5677788999999999987 6777777777 99999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL 295 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 295 (346)
+-|.|. ++++++. ..|++||+-..++.+..+..|...|+|+++..++ ..|++++.|+.|++||+..
T Consensus 204 ~lpsgs-~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~----------- 269 (487)
T KOG0310|consen 204 ALPSGS-LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTN----------- 269 (487)
T ss_pred EcCCCC-EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccc-----------
Confidence 999998 8888765 5899999997777777777799999999999999 9999999999999999877
Q ss_pred cCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059 296 VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw 342 (346)
.+.++.+. ..++|.+++.+|+++ .++.|..+|.+.+=
T Consensus 270 --------~Kvv~s~~-~~~pvLsiavs~dd~-t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 270 --------YKVVHSWK-YPGPVLSIAVSPDDQ-TVVIGMSNGLVSIR 306 (487)
T ss_pred --------eEEEEeee-cccceeeEEecCCCc-eEEEecccceeeee
Confidence 67777664 567899999999987 78889889987653
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7e-30 Score=207.54 Aligned_cols=240 Identities=21% Similarity=0.280 Sum_probs=195.9
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE 143 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 143 (346)
..+.|.+++|+|..++=++++ ..-.+.+|+.. .....+++...+..+++++|..||+ ++++|...|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt----~S~rvqly~~~---------~~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG 90 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVT----SSVRVQLYSSV---------TRSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESG 90 (487)
T ss_pred ccCcceeEecCCCCCCceEEe----cccEEEEEecc---------hhhhhhhHHhhccceeEEEeecCCe-EEEccCCcC
Confidence 447899999999988777664 44589999987 5667777777888999999999999 466667789
Q ss_pred eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEE-EEecCCeEEEEEccCCCccceeeccc---eeEEEeCCC
Q 019059 144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK 219 (346)
Q Consensus 144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~ 219 (346)
.|++||+.+ +.......+|..++..+.|+|++..++ ++++|+.+++||+.+......+. +| |+|.+|+|.
T Consensus 91 ~V~vfD~k~-----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 91 HVKVFDMKS-----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPA 164 (487)
T ss_pred cEEEecccc-----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccC
Confidence 999999653 122223346788999999999877655 55567889999999888533444 66 999999999
Q ss_pred CCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc
Q 019059 220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP 299 (346)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 299 (346)
.+.++++|+.||.|++||+|.....+.++. |..+|..+.+-|.| ..+++++. ..|+|||+.+
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~--------------- 226 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSG-SLIASAGG-NSVKVWDLTT--------------- 226 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecC---------------
Confidence 888999999999999999998655666664 99999999999999 89999885 4799999997
Q ss_pred cccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.++.+.....|...|+|+++..++. .|++++-|+.|++|++.
T Consensus 227 ---G~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 227 ---GGQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTT 268 (487)
T ss_pred ---CceehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEcc
Confidence 2566666666999999999999886 88999999999999964
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=190.37 Aligned_cols=266 Identities=14% Similarity=0.197 Sum_probs=207.6
Q ss_pred eEEEeecccCCCCeEEEEEecCCC-------Ce--EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCc
Q 019059 30 SFLTGTLSLKEENEVHLLRLSSGG-------TE--LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPE 100 (346)
Q Consensus 30 ~~~~g~~~~~~~~~i~~~~~~~~~-------~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~ 100 (346)
++++|++ +..|+.+.+.++. ++ ...-.+..|.+.|++++.+ ++++++ |+.|-+|+|||+.
T Consensus 3 ~iIvGtY----E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aS----GssDetI~IYDm~- 71 (362)
T KOG0294|consen 3 EIIVGTY----EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVAS----GSSDETIHIYDMR- 71 (362)
T ss_pred eEEEeee----eeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEec----cCCCCcEEEEecc-
Confidence 6777764 4556666666543 01 1123456788999999996 677777 5899999999998
Q ss_pred ccCCCCCccceeeeeeeccCCceEEEEeecCCC-CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC
Q 019059 101 LYGQLNSPQLERIAALDAHVGKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH 179 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 179 (346)
....+..+-.|.+.|+++.|.+.-. ..++++++||.|.+|+...- .......+|...|+.++.+|.
T Consensus 72 --------k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-----~~~~slK~H~~~Vt~lsiHPS 138 (362)
T KOG0294|consen 72 --------KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-----ELLKSLKAHKGQVTDLSIHPS 138 (362)
T ss_pred --------chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-----EEeeeecccccccceeEecCC
Confidence 6677777889999999999988753 12888899999999998742 223334567778999999999
Q ss_pred CCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEE
Q 019059 180 DVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV 258 (346)
Q Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v 258 (346)
++..++.+.|+.+++|++-.++.-......+ .+.+.|+|.|. .++.+..+ .|-+|.+.+ ......+. ....+.++
T Consensus 139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd-~F~v~~~~-~i~i~q~d~-A~v~~~i~-~~~r~l~~ 214 (362)
T KOG0294|consen 139 GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD-HFVVSGRN-KIDIYQLDN-ASVFREIE-NPKRILCA 214 (362)
T ss_pred CceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC-EEEEEecc-EEEEEeccc-HhHhhhhh-ccccceee
Confidence 9999999999999999999998777666566 77799999999 56666653 788998886 33333333 23456777
Q ss_pred EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEe--CCCCCcEEEEeecC
Q 019059 259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW--SSREPWIFASLSYD 336 (346)
Q Consensus 259 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d 336 (346)
.|-.. ..|++|+.|+.|++||... ..+...+.+|...|.++.+ .|++ .+|+++|.|
T Consensus 215 ~~l~~--~~L~vG~d~~~i~~~D~ds-------------------~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSD 272 (362)
T KOG0294|consen 215 TFLDG--SELLVGGDNEWISLKDTDS-------------------DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSD 272 (362)
T ss_pred eecCC--ceEEEecCCceEEEeccCC-------------------CccceeeecchhheeeeEEEecCCc-eEEEEeccC
Confidence 66543 6899999999999999998 7889999999999999984 4555 499999999
Q ss_pred CeEEEeeec
Q 019059 337 GRVRNHMLE 345 (346)
Q Consensus 337 ~~v~vw~~~ 345 (346)
|.|+|||++
T Consensus 273 G~I~vWd~~ 281 (362)
T KOG0294|consen 273 GFIKVWDID 281 (362)
T ss_pred ceEEEEEcc
Confidence 999999985
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-28 Score=189.64 Aligned_cols=244 Identities=15% Similarity=0.183 Sum_probs=203.7
Q ss_pred eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (346)
Q Consensus 61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 140 (346)
+..-.+.|+++.|+++|..++++ +.|.+++|||.. .++.++++..++..+..++|...... ++.++
T Consensus 10 f~~~~~~i~sl~fs~~G~~lits----s~dDsl~LYd~~---------~g~~~~ti~skkyG~~~~~Fth~~~~-~i~sS 75 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITS----SEDDSLRLYDSL---------SGKQVKTINSKKYGVDLACFTHHSNT-VIHSS 75 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEe----cCCCeEEEEEcC---------CCceeeEeecccccccEEEEecCCce-EEEcc
Confidence 33456899999999999999985 588899999998 78888999888888999999877665 44443
Q ss_pred --cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCC
Q 019059 141 --DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDT 218 (346)
Q Consensus 141 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~ 218 (346)
.|..|+..++.+++. .....||...|.+++.+|-+..+++++.|++|++||++..++...+....-..++|+|
T Consensus 76 tk~d~tIryLsl~dNky-----lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp 150 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKY-----LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDP 150 (311)
T ss_pred CCCCCceEEEEeecCce-----EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECC
Confidence 489999999986553 2345689999999999999999999999999999999988887777644466789999
Q ss_pred CCCcEEEEecCCCeEEEEEcccC-CcceeeecCC---CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059 219 KKKHLLVTAADESGIHLWDLRML-KAPIQELPGH---THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES 294 (346)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~---~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 294 (346)
+|- ++|++.....|++||+|.. +.|..++... ....+.+.|||+| ++|+.+...+.+++.|.-.
T Consensus 151 ~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~---------- 218 (311)
T KOG1446|consen 151 EGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFD---------- 218 (311)
T ss_pred CCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccC----------
Confidence 997 8888887779999999986 4466666543 5678999999999 8998889999999999998
Q ss_pred ccCCccccccccccccccccce---eeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 295 LVESPNQRANSLLNSYSDYEDS---VYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+....++.++... -.+..|.|+++ ++++|+.||+|.+|+++
T Consensus 219 ---------G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 219 ---------GTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLE 262 (311)
T ss_pred ---------CcEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcC
Confidence 7787777776542 25788999998 89999999999999985
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.9e-28 Score=207.79 Aligned_cols=262 Identities=18% Similarity=0.276 Sum_probs=214.7
Q ss_pred CCCeEEEEEecCCCC------eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceee
Q 019059 40 EENEVHLLRLSSGGT------ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERI 113 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 113 (346)
.+|.+..+.++...+ ......+.+|...|.++++|.+...+++ +..+.+++|+.. +.+++
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S-----ga~~SikiWn~~---------t~kci 407 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS-----GAGESIKIWNRD---------TLKCI 407 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee-----cCCCcEEEEEcc---------Cccee
Confidence 345555555554211 2223557799999999999987765555 466799999998 78999
Q ss_pred eeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEE
Q 019059 114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQ 193 (346)
Q Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 193 (346)
+++... .+.+..|.|.+++ ++.+...|.+.+||+......... ..|...+.+++.+||+..+++++.|.+|+
T Consensus 408 RTi~~~--y~l~~~Fvpgd~~-Iv~G~k~Gel~vfdlaS~~l~Eti-----~AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 408 RTITCG--YILASKFVPGDRY-IVLGTKNGELQVFDLASASLVETI-----RAHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred EEeccc--cEEEEEecCCCce-EEEeccCCceEEEEeehhhhhhhh-----hccccceeeeeecCCCCceEEecCCcEEE
Confidence 988543 7899999999886 777888999999999865533333 24777999999999999999999999999
Q ss_pred EEEccC-----CCcc--------ceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE
Q 019059 194 FWDLRS-----MGKT--------NSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC 259 (346)
Q Consensus 194 i~d~~~-----~~~~--------~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 259 (346)
+||..- +... +++.... |.|++++||+. +++++--|.+|++|-+.+.+ -...+.+|.-||.|+.
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMD 557 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEeccee-eeeeecccccceeEEe
Confidence 999752 2111 2222222 99999999999 89999999999999999855 5667889999999999
Q ss_pred eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059 260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339 (346)
Q Consensus 260 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v 339 (346)
.+|++ .+++|||.|..|+||-+.- +.+-+.+.+|...|.++.|.|... ++.++|.|+.|
T Consensus 558 IS~DS-klivTgSADKnVKiWGLdF-------------------GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kv 616 (888)
T KOG0306|consen 558 ISPDS-KLIVTGSADKNVKIWGLDF-------------------GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKV 616 (888)
T ss_pred ccCCc-CeEEeccCCCceEEecccc-------------------chhhhhhhcccCceeEEEEcccce-eEEEecCcceE
Confidence 99999 9999999999999999998 999999999999999999999875 99999999999
Q ss_pred EEeeecC
Q 019059 340 RNHMLEK 346 (346)
Q Consensus 340 ~vw~~~~ 346 (346)
+-||-++
T Consensus 617 KqWDg~k 623 (888)
T KOG0306|consen 617 KQWDGEK 623 (888)
T ss_pred Eeechhh
Confidence 9998553
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.2e-28 Score=177.88 Aligned_cols=262 Identities=15% Similarity=0.216 Sum_probs=198.4
Q ss_pred CeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCccc------CCCCCccceeeeeeeccCCceEEEE
Q 019059 54 TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY------GQLNSPQLERIAALDAHVGKINCVL 127 (346)
Q Consensus 54 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~ 127 (346)
+......+......|.+++|+|.|...++ |++..+++|...+... +....|+....+.-+.|++.|+|.+
T Consensus 21 ~~f~~i~~l~dsqairav~fhp~g~lyav----gsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHPAGGLYAV----GSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred cceEEEEEecchhheeeEEecCCCceEEe----ccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 33444455556678999999999887766 4788889888665331 1122222333344457899999999
Q ss_pred eecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC----CCcEEEEe-cCCeEEEEEccCCCc
Q 019059 128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH----DVNAVAAT-CESSVQFWDLRSMGK 202 (346)
Q Consensus 128 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i~i~d~~~~~~ 202 (346)
|+|+|. ++++++.|..|++..++.......-...+...|...|..++|..+ +..|++++ .|..|++-|-..++.
T Consensus 97 ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc
Confidence 999999 466668899999987765433322223334557778999999643 34455555 488899999999998
Q ss_pred cceeeccc---eeEE-EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--C-----CcceEEEEeCCCCCcEEEEe
Q 019059 203 TNSIEHAH---VRNV-DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--H-----THWTWAVCCNPEYDGFILSA 271 (346)
Q Consensus 203 ~~~~~~~~---v~~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----~~~v~~v~~~~~~~~~l~s~ 271 (346)
...+. +| |.++ .|+ +- ++++|+.|.+|++||+|- ..++.++.. | ...|.+++..|.| ++|++|
T Consensus 176 ~~a~s-ghtghilalyswn--~~-m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg 249 (350)
T KOG0641|consen 176 FHALS-GHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASG 249 (350)
T ss_pred ceeec-CCcccEEEEEEec--Cc-EEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCc-ceeeec
Confidence 88776 55 5554 443 43 899999999999999997 445665532 2 2578999999999 999999
Q ss_pred cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
-.|.+..+||++. +..++.+..|+..|.++.|+|.. .++.+++.|..|++=|+++
T Consensus 250 ~~dssc~lydirg-------------------~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 250 HADSSCMLYDIRG-------------------GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred cCCCceEEEEeeC-------------------CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeeccc
Confidence 9999999999998 89999999999999999999977 4999999999999999875
No 82
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-30 Score=228.67 Aligned_cols=278 Identities=18% Similarity=0.325 Sum_probs=224.0
Q ss_pred CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCc---eEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee
Q 019059 41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQR---IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD 117 (346)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 117 (346)
.-+++.+++.+....+....-..-...-+.++|.+.+.. |+++ |.+||.|.+||.... ..+.....+.+..
T Consensus 40 slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaG---G~edG~I~ly~p~~~---~~~~~~~~la~~~ 113 (1049)
T KOG0307|consen 40 SLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAG---GLEDGNIVLYDPASI---IANASEEVLATKS 113 (1049)
T ss_pred ccceeeecccCccccccccccccccccceeeeecccCCCccceeec---cccCCceEEecchhh---ccCcchHHHhhhc
Confidence 344555555555433333333344467889999998877 4665 689999999998732 1233456777888
Q ss_pred ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEE
Q 019059 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWD 196 (346)
Q Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d 196 (346)
.|++.|..++|++....++++|+.||.|.|||+.+.+....... ......|.+++|+..-.+ |++++.+|.+.|||
T Consensus 114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~---~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS---QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC---CCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 99999999999999987677778899999999997554444332 224558999999987666 45556688999999
Q ss_pred ccCCCccceeeccc----eeEEEeCCCCCcEEEEecCCC---eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEE
Q 019059 197 LRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADES---GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 269 (346)
Q Consensus 197 ~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 269 (346)
++..+++..+.... +..++|+|++...++++++|. .|.+||+|....+++++++|...|.++.|++.++.+|+
T Consensus 191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhh
Confidence 99988777665221 889999999987788877664 69999999988899999999999999999999989999
Q ss_pred EecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 270 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
+++.|+.|.+|+.++ ++.+..+.....++..+.|+|..+.+++..+-||.|.||++++
T Consensus 271 SsgkD~~ii~wN~~t-------------------gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 271 SSGKDNRIICWNPNT-------------------GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cccCCCCeeEecCCC-------------------ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 999999999999999 9999999988899999999999988999999999999999864
No 83
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.4e-29 Score=198.13 Aligned_cols=248 Identities=19% Similarity=0.264 Sum_probs=200.0
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
..+..|.++|+-+.||++|++|+++ +.|.+..+|.+.. ....+..+++.+|..+|..+.||||.++ +++
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsa----SkD~Taiiw~v~~------d~~~kl~~tlvgh~~~V~yi~wSPDdry-Lla 286 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASA----SKDSTAIIWIVVY------DVHFKLKKTLVGHSQPVSYIMWSPDDRY-LLA 286 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeec----cCCceEEEEEEec------CcceeeeeeeecccCceEEEEECCCCCe-EEe
Confidence 4567899999999999999999996 7999999999863 1135678899999999999999999997 677
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec---cceeEEE
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH---AHVRNVD 215 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~v~~~~ 215 (346)
++.+..+.+||+.++.....+.. ++...+.+++|.||+..+++|+.|+++..||+.... ...... +.|.+++
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~~----~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYPS----GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLA 361 (519)
T ss_pred cCchHheeeccCCcchhhhhccc----CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEE
Confidence 77788899999998875444432 234488999999999999999999999999998543 333331 1299999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL 295 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 295 (346)
..+||. .+++...|..|++++... ..... +..-..+|+++..|.++ +++.+.=.+..+++||+..
T Consensus 362 it~Dgk-~vl~v~~d~~i~l~~~e~-~~dr~-lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e----------- 426 (519)
T KOG0293|consen 362 ITYDGK-YVLLVTVDKKIRLYNREA-RVDRG-LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEE----------- 426 (519)
T ss_pred EcCCCc-EEEEEecccceeeechhh-hhhhc-cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecch-----------
Confidence 999999 566666899999999875 32232 33346799999999999 8999888999999999998
Q ss_pred cCCccccccccccccccccce--eeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 296 VESPNQRANSLLNSYSDYEDS--VYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
...+..+.||... +-.-+|-.....++++||+|+.|+||+..
T Consensus 427 --------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 427 --------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred --------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 8889999998754 33445655444599999999999999854
No 84
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5e-30 Score=201.19 Aligned_cols=241 Identities=20% Similarity=0.273 Sum_probs=199.0
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
..+.+|.+.|.+++=+|.....+++ |+.||.|++||+. +..+..++..|.+.|..+++.. +. +++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aS---Gs~DG~VkiWnls---------qR~~~~~f~AH~G~V~Gi~v~~-~~--~~t 124 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVAS---GSCDGEVKIWNLS---------QRECIRTFKAHEGLVRGICVTQ-TS--FFT 124 (433)
T ss_pred hhccccccccchhhcCcchhhhhhc---cccCceEEEEehh---------hhhhhheeecccCceeeEEecc-cc--eEE
Confidence 4568999999999999977444444 6899999999999 7889999999999999999987 33 788
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEe
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDY 216 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~ 216 (346)
++.|.+|+.|.++.. +...... ...+.++.-+..+..++++|. .|.|||.+...++..+.-+. +.++.|
T Consensus 125 vgdDKtvK~wk~~~~--p~~tilg-----~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGP--PLHTILG-----KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred ecCCcceeeeeccCC--cceeeec-----cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEec
Confidence 889999999998752 2222211 124566665555555665553 59999999988998888666 999999
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059 217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296 (346)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 296 (346)
+|....+|+++..|+.|.+||+|. ..|++.+. ....-+.|+|+|.. ..|.+|++|..++.||++.
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~------------ 260 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQ-ASPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRN------------ 260 (433)
T ss_pred CCCcchheeeeccCCceEEEeccc-CCccceee-eeccccceecCccc-cceeeccccccceehhhhh------------
Confidence 999988999999999999999998 55776654 34556889999977 8899999999999999998
Q ss_pred CCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
...++..+.+|.+.|.+++|||.|+ -+++||.|.+||||.+.
T Consensus 261 ------l~~p~~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 261 ------LSRPLNVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ------hcccchhhcccceeEEEeccCCCcc-hhccccccceEEEeecC
Confidence 4788899999999999999999998 89999999999999864
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.4e-28 Score=214.31 Aligned_cols=253 Identities=21% Similarity=0.330 Sum_probs=211.4
Q ss_pred CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 119 (346)
.++.+.+|+... .......+.+|.+.|+++++..-+..|++ |+.|.++++||.. ++++...+.+|
T Consensus 226 ~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~~~~~lvs----gS~D~t~rvWd~~---------sg~C~~~l~gh 290 (537)
T KOG0274|consen 226 DDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPSGGDKLVS----GSTDKTERVWDCS---------TGECTHSLQGH 290 (537)
T ss_pred CCceeEEeeccc--ceEEEeeccCCCCCceeEEEecCCCEEEE----EecCCcEEeEecC---------CCcEEEEecCC
Confidence 456676775555 34454559999999999999875556666 4789999999988 89999999999
Q ss_pred CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (346)
.+.|.++...+. .++.++.|.+|++|++.++...... .+|..+|.++..+ +..+++++.|++|++||+.+
T Consensus 291 ~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~-----~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 291 TSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLL-----RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred CceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEe-----ccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence 999999987654 2555688999999999966533222 2377799999997 78899999999999999999
Q ss_pred CCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059 200 MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 200 ~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
++++..+. +| |.++.+.+. . .+++|+.|++|++||+++..+++.++.+|..-+..+.+. + ++|++++.|++
T Consensus 361 ~~cl~sl~-gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 361 GKCLKSLS-GHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--D-NFLVSSSADGT 434 (537)
T ss_pred ceeeeeec-CCcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--c-ceeEecccccc
Confidence 99999998 57 999988876 4 799999999999999998437899999999999776654 4 78999999999
Q ss_pred EEEEecCCCCCCCCCcccccCCcccccccccccccc-ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
|++||... ++++.++.+ |...|+.+++. .. .+++.+.|+.+++||+.
T Consensus 435 Ik~WD~~~-------------------~~~~~~~~~~~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 435 IKLWDAEE-------------------GECLRTLEGRHVGGVSALALG--KE-EILCSSDDGSVKLWDLR 482 (537)
T ss_pred EEEeeccc-------------------CceeeeeccCCcccEEEeecC--cc-eEEEEecCCeeEEEecc
Confidence 99999998 899999988 66789988887 22 68889999999999985
No 86
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=8.5e-29 Score=194.40 Aligned_cols=243 Identities=16% Similarity=0.314 Sum_probs=192.0
Q ss_pred EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (346)
Q Consensus 58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 137 (346)
...+..|.+.|.+++.+| ...++++ ||.|....||++. ++.....+.+|++.|.++.|+.+|.+ ++
T Consensus 57 ~~tF~~H~~svFavsl~P-~~~l~aT---GGgDD~AflW~~~---------~ge~~~eltgHKDSVt~~~Fshdgtl-LA 122 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHP-NNNLVAT---GGGDDLAFLWDIS---------TGEFAGELTGHKDSVTCCSFSHDGTL-LA 122 (399)
T ss_pred eeehhhcCCceEEEEeCC-CCceEEe---cCCCceEEEEEcc---------CCcceeEecCCCCceEEEEEccCceE-EE
Confidence 367788999999999999 4455555 6888899999998 67788899999999999999999993 55
Q ss_pred EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (346)
Q Consensus 138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~ 214 (346)
++.-+|.|+||+..++.....+.. ....+.-+.|+|.+..+++|+.||.+-+|.+.++...+.+. +| +++=
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~-----e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G 196 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQ-----EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCG 196 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeec-----ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccc
Confidence 556799999999998776555541 23378888999999999999999999999999876655555 66 9999
Q ss_pred EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--------------------------------------------
Q 019059 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-------------------------------------------- 250 (346)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------------------------- 250 (346)
.|.|+|+ .++++..||+|++|++.+ .+|+..+..
T Consensus 197 ~f~pdGK-r~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 197 EFIPDGK-RILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred cccCCCc-eEEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence 9999998 899999999999999987 445544431
Q ss_pred -------CCcceEEEEe---CCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059 251 -------HTHWTWAVCC---NPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL 320 (346)
Q Consensus 251 -------~~~~v~~v~~---~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (346)
+...+.+|.+ +..- .+.|+|+.||+|.|||+.. ..+.+ .-.|..+|..+
T Consensus 275 ~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~-------------------~~~R~-~c~he~~V~~l 333 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAA-------------------STLRH-ICEHEDGVTKL 333 (399)
T ss_pred Cccccccchhhhhhhhhccccccc-chhhcccccceEEEEeccc-------------------chhhe-eccCCCceEEE
Confidence 1111222222 2233 5678899999999999987 44443 44688889999
Q ss_pred EeCCCCCcEEEEeecCCeEEEeeec
Q 019059 321 AWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 321 ~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.|-+ .. +|++++.+|.|+.||..
T Consensus 334 ~w~~-t~-~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 334 KWLN-TD-YLLTACANGKVRQWDAR 356 (399)
T ss_pred EEcC-cc-hheeeccCceEEeeecc
Confidence 9999 44 78899999999999964
No 87
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.97 E-value=1e-27 Score=183.14 Aligned_cols=307 Identities=16% Similarity=0.249 Sum_probs=228.9
Q ss_pred eeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCC----CceEEE
Q 019059 8 IGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD----QRIFST 83 (346)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~~~ 83 (346)
+-|.-.++.-++.|........|+++|++.-...|.|.++.+..+...+....-+.|+-+++.+.|.|+. +.|+++
T Consensus 39 y~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT 118 (364)
T KOG0290|consen 39 YTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT 118 (364)
T ss_pred EEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc
Confidence 3445555556666776666789999999988888999999999988888877778999999999999975 356664
Q ss_pred EeecCCcceEEEEecCcccCCCCCccceeeeee-----eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce
Q 019059 84 VFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-----DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ 158 (346)
Q Consensus 84 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 158 (346)
.+..+++|.+..... ...+...+ ..+..++++..|+.-...++.+++-|.+..|||++++.. .
T Consensus 119 -----s~D~LRlWri~~ee~-----~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--~ 186 (364)
T KOG0290|consen 119 -----SSDFLRLWRIGDEES-----RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--G 186 (364)
T ss_pred -----ccCeEEEEeccCcCC-----ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--c
Confidence 334899999873211 11221122 234678999999998888777778899999999998622 1
Q ss_pred eeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccceeecc---c--eeEEEeCCCCCcEEEEecCC-C
Q 019059 159 VQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHA---H--VRNVDYDTKKKHLLVTAADE-S 231 (346)
Q Consensus 159 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~---~--v~~~~~~~~~~~~l~~~~~d-g 231 (346)
......-.|..+|+.++|...+.. +++.+.||.+|++|+|..+....+... + ...++|+++..+++++-..| .
T Consensus 187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 111122347779999999986654 667788999999999987654444322 2 88999999998888876554 5
Q ss_pred eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc
Q 019059 232 GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS 311 (346)
Q Consensus 232 ~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (346)
.|.+.|+|.+..++..+++|.+.|+.++|.|.....|++++.|.++.|||+..-.. .....++..+.
T Consensus 267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~-------------~~~~dPilay~ 333 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR-------------ENGEDPILAYT 333 (364)
T ss_pred eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc-------------cCCCCchhhhh
Confidence 79999999999999999999999999999999989999999999999999987211 01123333343
Q ss_pred cccceeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059 312 DYEDSVYGLAWSSREPWIFASLSYDGRVRN 341 (346)
Q Consensus 312 ~~~~~v~~~~~~~~~~~~l~s~~~d~~v~v 341 (346)
-.+.|..+.|+|..+..++.+. ++.+.+
T Consensus 334 -a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 334 -AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred -ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 3456999999986655666655 444444
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.7e-28 Score=194.87 Aligned_cols=236 Identities=19% Similarity=0.274 Sum_probs=198.9
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI 145 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i 145 (346)
..+.++...|....+++ ||.|..+.++|.+ ..+.+..+++|.-.|+.+.++++... +++++.|..|
T Consensus 220 pgi~ald~~~s~~~ilT----GG~d~~av~~d~~---------s~q~l~~~~Gh~kki~~v~~~~~~~~-v~~aSad~~i 285 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILT----GGEDKTAVLFDKP---------SNQILATLKGHTKKITSVKFHKDLDT-VITASADEII 285 (506)
T ss_pred CCeeEEeecCCCCccee----cCCCCceEEEecc---------hhhhhhhccCcceEEEEEEeccchhh-eeecCCcceE
Confidence 46788888887566666 6899999999988 77899999999999999999999884 6666779999
Q ss_pred EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc-c---eeEEEeCCCCC
Q 019059 146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA-H---VRNVDYDTKKK 221 (346)
Q Consensus 146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~---v~~~~~~~~~~ 221 (346)
++|........... ..|..+|+.+..+|.+.++++++.|++..+.|++++..+...... . +++.+|+|||-
T Consensus 286 ~vws~~~~s~~~~~-----~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL 360 (506)
T KOG0289|consen 286 RVWSVPLSSEPTSS-----RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL 360 (506)
T ss_pred EeeccccccCcccc-----ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce
Confidence 99998765533322 236669999999999999999999999999999999987766642 2 99999999997
Q ss_pred cEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccc
Q 019059 222 HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ 301 (346)
Q Consensus 222 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (346)
+|.+|..|+.|++||+.+.. .+..|.+|.++|..++|+.+| .+|+++.+|+.|++||+|.
T Consensus 361 -ifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK----------------- 420 (506)
T KOG0289|consen 361 -IFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK----------------- 420 (506)
T ss_pred -EEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh-----------------
Confidence 99999999999999999844 788899999999999999999 9999999999999999998
Q ss_pred ccccccccccccc-ceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 302 RANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 302 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
.+...++.-.. ..|.++.|.+.|. +|+.++.|=+|+++.
T Consensus 421 --l~n~kt~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 421 --LKNFKTIQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICK 460 (506)
T ss_pred --hcccceeeccccccceeEEEcCCCC-eEEeecceeEEEEEe
Confidence 45555554322 3699999999997 788887776666654
No 89
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.1e-29 Score=212.98 Aligned_cols=241 Identities=17% Similarity=0.274 Sum_probs=192.3
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF 146 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~ 146 (346)
.+.++.|......+++++ +..|.|.+||+... ...+.+..+..|+..+++++|++...+++++|+.||.|+
T Consensus 89 S~~DVkW~~~~~NlIAT~---s~nG~i~vWdlnk~------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK 159 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATC---STNGVISVWDLNKS------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVK 159 (839)
T ss_pred ehhhcccccchhhhheee---cCCCcEEEEecCcc------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEE
Confidence 466788987666777764 78899999999821 123555678899999999999999999999999999999
Q ss_pred EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCc
Q 019059 147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKH 222 (346)
Q Consensus 147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~ 222 (346)
+||++.......... ....|..++|+|... .++++...|.+++||+|..........+| |.|+.|+|++.
T Consensus 160 ~~DlR~~~S~~t~~~-----nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~- 233 (839)
T KOG0269|consen 160 CWDLRSKKSKSTFRS-----NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE- 233 (839)
T ss_pred EEeeecccccccccc-----cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-
Confidence 999997665444433 344899999999654 46666678999999999876443333366 99999999887
Q ss_pred EEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCCCCcEEEEecC--CCeEEEEecCCCCCCCCCcccccCCc
Q 019059 223 LLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESP 299 (346)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~ 299 (346)
+||+|+.|+.|+|||+.... .++.++. ...+|.+|+|-|..+..||+++. |-.|+|||++.
T Consensus 234 ~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR--------------- 297 (839)
T KOG0269|consen 234 WLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR--------------- 297 (839)
T ss_pred eeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc---------------
Confidence 99999999999999988533 2444443 46789999999999788888775 77999999997
Q ss_pred cccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059 300 NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRN 341 (346)
Q Consensus 300 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~v 341 (346)
..-+..++..|...++.++|.......+.+++.|++|..
T Consensus 298 ---PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 298 ---PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ---ccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 356778899999999999998755568899999998753
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-26 Score=179.67 Aligned_cols=278 Identities=16% Similarity=0.202 Sum_probs=217.0
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v 95 (346)
...+.++.++.++..+++. .++..+.+++..... ..+.+..++-.|..++|-.....++.+. ...|.+|+.
T Consensus 14 ~~~i~sl~fs~~G~~lits----s~dDsl~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~~~~i~sS--tk~d~tIry 84 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITS----SEDDSLRLYDSLSGK---QVKTINSKKYGVDLACFTHHSNTVIHSS--TKEDDTIRY 84 (311)
T ss_pred CCceeEEEecCCCCEEEEe----cCCCeEEEEEcCCCc---eeeEeecccccccEEEEecCCceEEEcc--CCCCCceEE
Confidence 4567788889999888885 366788888877653 3355556667888999976666666542 245889999
Q ss_pred EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (346)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (346)
-++. +.+.++.+.+|...|..++.+|-+. .+++++.|++|++||++..+....+... .-..++
T Consensus 85 Lsl~---------dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~-------~~pi~A 147 (311)
T KOG1446|consen 85 LSLH---------DNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS-------GRPIAA 147 (311)
T ss_pred EEee---------cCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC-------CCccee
Confidence 9998 7799999999999999999999987 4888899999999999965544333321 334568
Q ss_pred eCCCCCcEEEEecCCeEEEEEccCC--Cccceeecc---c--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee
Q 019059 176 WDPHDVNAVAATCESSVQFWDLRSM--GKTNSIEHA---H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL 248 (346)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~---~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 248 (346)
|.|+|-.+|++.....|++||+|.- .+..++... + .+.|.|+|+|+ .++.+...+.+++.|.-. +....++
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~-G~~~~tf 225 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFD-GTVKSTF 225 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccC-CcEeeeE
Confidence 9999988888887779999999964 344444433 2 99999999999 566667778999999887 5577777
Q ss_pred cCCCcce---EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc-ccceeeEEEeCC
Q 019059 249 PGHTHWT---WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSS 324 (346)
Q Consensus 249 ~~~~~~v---~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 324 (346)
..+...- ....|+|++ +++++|+.||+|.+|++++ +..+..+.+ +.+++.++.|+|
T Consensus 226 s~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~t-------------------g~~v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLET-------------------GKKVAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred eeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCC-------------------CcEeeEecCCCCCCccccccCC
Confidence 7665433 567899999 9999999999999999998 888888888 688899999999
Q ss_pred CCCcEEEEeecCCeEEEeee
Q 019059 325 REPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 325 ~~~~~l~s~~~d~~v~vw~~ 344 (346)
.-. +++++ +..+.+|-.
T Consensus 286 ~~~-mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 286 RYA-MFVSA--SSNLVFWLP 302 (311)
T ss_pred cee-eeeec--CceEEEEec
Confidence 764 55544 467777754
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=191.44 Aligned_cols=253 Identities=10% Similarity=0.127 Sum_probs=206.0
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
...++...-+.|..|+||+++|++ |+.||-|.|||.....-.+ .-..+....+.-++.+|.|++|+.|.. .+++
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvs----gSvDGFiEVWny~~GKlrK-DLkYQAqd~fMMmd~aVlci~FSRDsE-MlAs 280 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVS----GSVDGFIEVWNYTTGKLRK-DLKYQAQDNFMMMDDAVLCISFSRDSE-MLAS 280 (508)
T ss_pred heecccccchhheeeCCCCceEee----ccccceeeeehhccchhhh-hhhhhhhcceeecccceEEEeecccHH-Hhhc
Confidence 335667788899999999999998 5899999999987211000 001122223445788999999999988 4666
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEE
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVD 215 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~ 215 (346)
++.||.|++|.+.++.+..++.. .|...|+++.|+.|+..+++++.|.++++.-+.+|++++.+. +| |+...
T Consensus 281 GsqDGkIKvWri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ 355 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEAT 355 (508)
T ss_pred cCcCCcEEEEEEecchHHHHhhh----hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceE
Confidence 68899999999999887666543 467789999999999999999999999999999999999998 77 99999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE 293 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 293 (346)
|.++|. .+++++.||+|++|+.++ ..++.+++. ...+|+++-.-|.++..++.+...++|.|.+++
T Consensus 356 ft~dG~-~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q---------- 423 (508)
T KOG0275|consen 356 FTDDGH-HIISASSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ---------- 423 (508)
T ss_pred EcCCCC-eEEEecCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc----------
Confidence 999998 899999999999999997 667877764 446789999999888999999999999999998
Q ss_pred cccCCccccccccccccccc---cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 294 SLVESPNQRANSLLNSYSDY---EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++.+..+... .+...+...+|.|. .+...++|+.++.|.+.
T Consensus 424 ----------GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 424 ----------GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVL 467 (508)
T ss_pred ----------ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEee
Confidence 4777666532 23456778999998 67788899999988763
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.6e-27 Score=181.76 Aligned_cols=269 Identities=17% Similarity=0.235 Sum_probs=208.4
Q ss_pred eeeEeeeccCCCCcceEE-EeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceE
Q 019059 15 QARCISDVKADTDHTSFL-TGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA 93 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i 93 (346)
+...|..+.++|...-++ .| +-++.|++|++...+ ....+....|.++|.+++|+.+|..++++ +.|+.+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~----SWD~tVR~wevq~~g-~~~~ka~~~~~~PvL~v~WsddgskVf~g----~~Dk~~ 96 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAG----SWDGTVRIWEVQNSG-QLVPKAQQSHDGPVLDVCWSDDGSKVFSG----GCDKQA 96 (347)
T ss_pred cccchheeEeccccCceEEec----ccCCceEEEEEecCC-cccchhhhccCCCeEEEEEccCCceEEee----ccCCce
Confidence 345677888888554444 44 358999999999873 34447778899999999999999888874 799999
Q ss_pred EEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC-cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059 94 AIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH-DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS 172 (346)
Q Consensus 94 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 172 (346)
++||+. +. .+..+..|.++|.++.|-+...+ +++++++|.+|+.||.+.......+...+ .++
T Consensus 97 k~wDL~---------S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe------RvY 160 (347)
T KOG0647|consen 97 KLWDLA---------SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE------RVY 160 (347)
T ss_pred EEEEcc---------CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc------eee
Confidence 999998 45 44566799999999999876553 46667999999999999766555554433 666
Q ss_pred EEEeCCCCCcEEEEecCCeEEEEEccCCCccc-eeec--cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-cceee
Q 019059 173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-SIEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-APIQE 247 (346)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~ 247 (346)
++..- ...++++..+..|.+|+++.+.... .+.. .. ++||+..++.+ ..+.|+-+|.+.+..+.... ..-.+
T Consensus 161 a~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~~~nFt 237 (347)
T KOG0647|consen 161 AADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNPKDNFT 237 (347)
T ss_pred ehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCccCcee
Confidence 66543 4678888889999999998765332 2221 11 99999999988 67999999999999887632 22334
Q ss_pred ecCCC---------cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceee
Q 019059 248 LPGHT---------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY 318 (346)
Q Consensus 248 ~~~~~---------~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (346)
|+.|. ..|++|+|+|.. ..|+|++.||++.+||-.. ...++....|..+|+
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkda-------------------r~kLk~s~~~~qpIt 297 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDA-------------------RTKLKTSETHPQPIT 297 (347)
T ss_pred EEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchh-------------------hhhhhccCcCCCccc
Confidence 45454 257889999988 8999999999999999987 777888888999999
Q ss_pred EEEeCCCCCcEEEE
Q 019059 319 GLAWSSREPWIFAS 332 (346)
Q Consensus 319 ~~~~~~~~~~~l~s 332 (346)
+.+|+.+|. ++|-
T Consensus 298 cc~fn~~G~-ifaY 310 (347)
T KOG0647|consen 298 CCSFNRNGS-IFAY 310 (347)
T ss_pred eeEecCCCC-EEEE
Confidence 999999998 5543
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=207.05 Aligned_cols=286 Identities=16% Similarity=0.286 Sum_probs=220.6
Q ss_pred eccCCCCcce-EEEeecccCCCCeEEEEEecCCCCe---EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEE
Q 019059 21 DVKADTDHTS-FLTGTLSLKEENEVHLLRLSSGGTE---LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIW 96 (346)
Q Consensus 21 ~~~~~~~~~~-~~~g~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw 96 (346)
.+..+....+ |..| +.++.|.+|.+...... .....+..|.+.|+++....+++.|+++ +.|.+|++|
T Consensus 29 ~Lq~da~~~ryLfTg----GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~----SsDtTVK~W 100 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTG----GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA----SSDTTVKVW 100 (735)
T ss_pred hccccCCCCceEEec----CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe----cCCceEEEe
Confidence 3444444555 4443 67899999998876542 2245677899999999999999999886 799999999
Q ss_pred ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC-----CceeeecccC-CCcee
Q 019059 97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK-----NAQVQSKQSS-GMLHY 170 (346)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~-~~~~~ 170 (346)
+... ...-++.++..|++-|.|+++-.....+++++|-|+.|.+||++++.. .......... ++...
T Consensus 101 ~~~~-------~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 101 NAHK-------DNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred eccc-------CcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 9872 112577788999999999999444444566668899999999997632 1111112222 77889
Q ss_pred eEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247 (346)
Q Consensus 171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 247 (346)
+++++.++.+..+++|+..+.|++||.++.+.+..+. +| |+.+..+++|. .+++++.||+|++||+.. .+++.+
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgq-QrCl~T 250 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQ-QRCLAT 250 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCC-eEeecCCCceEEeeeccc-cceeee
Confidence 9999999999888999999999999999999999998 88 99999999998 899999999999999998 668999
Q ss_pred ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCC
Q 019059 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP 327 (346)
Q Consensus 248 ~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 327 (346)
+..|...|+++..+|+- ..+++|+.|+.|..=|++. ......+-....+|..+..+.+..
T Consensus 251 ~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n-------------------~~~~tlick~daPv~~l~~~~~~~ 310 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRN-------------------PAKSTLICKEDAPVLKLHLHEHDN 310 (735)
T ss_pred EEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCC-------------------chhheEeecCCCchhhhhhccccC
Confidence 99999999999999998 9999999999999999987 222222222334566666654333
Q ss_pred cEEEEeecCCeEEEeeec
Q 019059 328 WIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 328 ~~l~s~~~d~~v~vw~~~ 345 (346)
-+-++..|+.|+-|.++
T Consensus 311 -~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 311 -SVWVTTTDSSIKRWKLE 327 (735)
T ss_pred -CceeeeccccceecCCc
Confidence 23455667777777543
No 94
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.2e-28 Score=180.83 Aligned_cols=253 Identities=21% Similarity=0.328 Sum_probs=195.1
Q ss_pred eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeec--CCCCcEEE
Q 019059 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWS--SGRHDKLV 138 (346)
Q Consensus 61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~ 138 (346)
...|.+.|.++...-.|++|+++ ++|++|+|+..+. +...+++.++.+|.++|..++|.. .|. ++++
T Consensus 7 dt~H~D~IHda~lDyygkrlATc----sSD~tVkIf~v~~------n~~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAS 75 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATC----SSDGTVKIFEVRN------NGQSKLLAELTGHSGPVWKVAWAHPKFGT-ILAS 75 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeee----cCCccEEEEEEcC------CCCceeeeEecCCCCCeeEEeecccccCc-EeeE
Confidence 34688999998888789999886 6999999999983 122478889999999999999975 565 4566
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC--CcEEEEecCCeEEEEEccCC--Cccceeeccc---e
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD--VNAVAATCESSVQFWDLRSM--GKTNSIEHAH---V 211 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~---v 211 (346)
++.||.|.||.-+++. ..+ ......|...|++++|.|.+ -.|++++.||.|.+.+.+.. -....+...| |
T Consensus 76 csYDgkVIiWke~~g~-w~k--~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGR-WTK--AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred eecCceEEEEecCCCc-hhh--hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 6889999999987663 222 23345688899999999864 55788889999999988754 2334444566 9
Q ss_pred eEEEeCCC---C----------CcEEEEecCCCeEEEEEcccCC-cceeeecCCCcceEEEEeCCCC---CcEEEEecCC
Q 019059 212 RNVDYDTK---K----------KHLLVTAADESGIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEY---DGFILSAGTD 274 (346)
Q Consensus 212 ~~~~~~~~---~----------~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~---~~~l~s~~~d 274 (346)
++++|.|. | .+.|++|+.|..|+||+..+.. ..-+++.+|...|+.++|.|.- ..+||+++.|
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 99999986 3 1259999999999999988632 2334588999999999999964 3689999999
Q ss_pred CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 275 STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 275 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
|++.||..+. +.++ -..+++. .....++.+.||+.|. +|+.++.|+.|.+|.-
T Consensus 233 g~viIwt~~~-e~e~------------wk~tll~---~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 233 GTVIIWTKDE-EYEP------------WKKTLLE---EFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKE 285 (299)
T ss_pred CcEEEEEecC-ccCc------------ccccccc---cCCcceEEEEEecccc-EEEEecCCcEEEEEEe
Confidence 9999998774 1000 0022333 3456799999999997 8999999999999953
No 95
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=3.8e-28 Score=198.41 Aligned_cols=264 Identities=16% Similarity=0.179 Sum_probs=215.4
Q ss_pred CCCeEEEEEecCCCCeEEEeee--eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee
Q 019059 40 EENEVHLLRLSSGGTELICEGL--FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD 117 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 117 (346)
..+-|.+|++...+.+.....+ .....-|.++..+||++.|++ ||.-.++.|||+.. ++......+.
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv----GGeastlsiWDLAa-------pTprikaelt 506 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV----GGEASTLSIWDLAA-------PTPRIKAELT 506 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe----ccccceeeeeeccC-------CCcchhhhcC
Confidence 3567899999865443333332 234478999999999999999 47888999999983 3444444555
Q ss_pred ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (346)
Q Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (346)
...-...+++.+||.+ +.++++.||.|.|||+.+.. ....+.+|...+.++..+++|..|-+|+-|++|+.||+
T Consensus 507 ssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~-----~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 507 SSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT-----LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred CcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce-----eeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 5455678899999998 57777889999999998533 33445678889999999999999999999999999999
Q ss_pred cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059 198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
++++.+....... |.++.++|.++ ++++|.+++.+.+..... .....+..|+..|.++.|.+.| +++++.+.|+.
T Consensus 581 regrqlqqhdF~SQIfSLg~cP~~d-WlavGMens~vevlh~sk--p~kyqlhlheScVLSlKFa~cG-kwfvStGkDnl 656 (705)
T KOG0639|consen 581 REGRQLQQHDFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSK--PEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNL 656 (705)
T ss_pred hhhhhhhhhhhhhhheecccCCCcc-ceeeecccCcEEEEecCC--ccceeecccccEEEEEEecccC-ceeeecCchhh
Confidence 9998776554334 99999999999 899999999998888764 3456677799999999999999 99999999999
Q ss_pred EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+..|.+.. +..++..+.. +.|.+.+.+.+++ ++++|+.|....||.+.
T Consensus 657 LnawrtPy-------------------GasiFqskE~-SsVlsCDIS~ddk-yIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 657 LNAWRTPY-------------------GASIFQSKES-SSVLSCDISFDDK-YIVTGSGDKKATVYEVI 704 (705)
T ss_pred hhhccCcc-------------------ccceeecccc-CcceeeeeccCce-EEEecCCCcceEEEEEe
Confidence 99999988 7778777654 4599999999987 99999999999998763
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=6.2e-29 Score=185.90 Aligned_cols=201 Identities=19% Similarity=0.320 Sum_probs=173.3
Q ss_pred eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (346)
Q Consensus 61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 140 (346)
.+.|..-|.+++|+.|..+|++ ||.+..++|+|++. ...+...+.+|.+.|..+-|....+. +++++
T Consensus 96 sf~hkhivk~~af~~ds~~llt----gg~ekllrvfdln~--------p~App~E~~ghtg~Ir~v~wc~eD~~-iLSSa 162 (334)
T KOG0278|consen 96 SFEHKHIVKAVAFSQDSNYLLT----GGQEKLLRVFDLNR--------PKAPPKEISGHTGGIRTVLWCHEDKC-ILSSA 162 (334)
T ss_pred hhhhhheeeeEEecccchhhhc----cchHHHhhhhhccC--------CCCCchhhcCCCCcceeEEEeccCce-EEeec
Confidence 3568889999999999999998 58999999999983 23455678899999999999987775 77778
Q ss_pred cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCC
Q 019059 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTK 219 (346)
Q Consensus 141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~ 219 (346)
+|+.|++||.+++.....+.... +|+++..+++|++ ++....+.|.+||..+-..++.+..+. |.+.+++|+
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s------~VtSlEvs~dG~i-lTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~ 235 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNS------PVTSLEVSQDGRI-LTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK 235 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCC------CCcceeeccCCCE-EEEecCceeEEeccccccceeeccCccccccccccCC
Confidence 89999999999988766665433 8999999998874 555567889999999999988888666 999999999
Q ss_pred CCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 220 KKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.. .+++|++|..++.||..+ +..+..+ ++|.++|.|+.|+|+| .+.++||+||+|+||.+..
T Consensus 236 k~-~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 236 KE-FFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred Cc-eEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecC
Confidence 97 999999999999999998 4455554 8999999999999999 9999999999999999876
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=8.1e-28 Score=196.96 Aligned_cols=254 Identities=16% Similarity=0.277 Sum_probs=187.6
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKL 137 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~ 137 (346)
..+.+|...|.++++.|.|.++++ |+-|..|++||+..... ..+..+.+. .....|.++.|++.+..+++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~s----Gs~Dy~v~~wDf~gMda-----s~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVS----GSLDYTVKFWDFQGMDA-----SMRSFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred EeccCCceEEEEeeecCCCceeee----ccccceEEEEecccccc-----cchhhhccCcccccccceeeecCCCCeEEE
Confidence 456678899999999999999998 58999999999973211 111122222 22457999999999997555
Q ss_pred EEecCCeEEEEEcCCCCCCceeee--------cccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCcc-ceee
Q 019059 138 VSIDEENIFLWSLDCSNKNAQVQS--------KQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKT-NSIE 207 (346)
Q Consensus 138 ~~~~d~~i~vwd~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~-~~~~ 207 (346)
++ .....+++|-+... ..+... ....+|...+++.+|+|+.+. +++++.||++++||+...+.. ..+.
T Consensus 232 vs-g~aqakl~DRdG~~-~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 232 VS-GSAQAKLLDRDGFE-IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred Ee-cCcceeEEccCCce-eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 54 47889999966322 222221 224689999999999997654 778888999999999866532 2232
Q ss_pred c----cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-c-eeeecCCCc--ceEEEEeCCCCCcEEEEecCCCe
Q 019059 208 H----AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-P-IQELPGHTH--WTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 208 ~----~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~-~~~~~~~~~--~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
. +. ++.++|+|+++ ++++|+.||.|.+|+.+.... + ...-..|.. .|+||.||++| ++|++-+.|++
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~t 387 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDT 387 (641)
T ss_pred eccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCc
Confidence 1 11 99999999999 899999999999999865321 2 233346776 89999999999 99999999999
Q ss_pred EEEEecCCCCCCCCCcccccCCcccccccccccccccc--ceeeEEEeCCCCCcEEEEeec------CCeEEEeee
Q 019059 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE--DSVYGLAWSSREPWIFASLSY------DGRVRNHML 344 (346)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~------d~~v~vw~~ 344 (346)
+++||++. ..+++.+..+-. -+-+.++|||+.+ ++++|.. .+.+.+||-
T Consensus 388 LKvWDLrq------------------~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 388 LKVWDLRQ------------------FKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred eeeeeccc------------------cccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEec
Confidence 99999997 356666655532 2357899999997 8888763 455777663
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=182.10 Aligned_cols=243 Identities=17% Similarity=0.234 Sum_probs=186.6
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE 143 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 143 (346)
-.+.|.+|+|||....++++ ++.|++||+|+++.. ....+ +....|.++|.+++|+.||.. +++++-|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A---~SWD~tVR~wevq~~------g~~~~-ka~~~~~~PvL~v~Wsddgsk-Vf~g~~Dk 94 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAA---GSWDGTVRIWEVQNS------GQLVP-KAQQSHDGPVLDVCWSDDGSK-VFSGGCDK 94 (347)
T ss_pred cccchheeEeccccCceEEe---cccCCceEEEEEecC------Ccccc-hhhhccCCCeEEEEEccCCce-EEeeccCC
Confidence 45789999999977777766 689999999999831 11222 445678999999999999985 67777799
Q ss_pred eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC--cEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCC
Q 019059 144 NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV--NAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKK 220 (346)
Q Consensus 144 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~ 220 (346)
.+++||+.+++ ...+. .|..+|..+.|-+... .|++|+.|.+|+.||+|...++.++..+. +.++..- .
T Consensus 95 ~~k~wDL~S~Q-~~~v~-----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~ 166 (347)
T KOG0647|consen 95 QAKLWDLASGQ-VSQVA-----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--Y 166 (347)
T ss_pred ceEEEEccCCC-eeeee-----ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--C
Confidence 99999999874 33333 3667899999977555 68999999999999999999998887665 7777654 3
Q ss_pred CcEEEEecCCCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc
Q 019059 221 KHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP 299 (346)
Q Consensus 221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 299 (346)
+ +++++..+..|.+|++++.....+... .....+.||+..++. ...+.|+-+|.+.|..+..+.
T Consensus 167 p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~------------- 231 (347)
T KOG0647|consen 167 P-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPN------------- 231 (347)
T ss_pred c-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCC-------------
Confidence 3 788888899999999986332222221 223457899988888 667999999999999998611
Q ss_pred cccccccccccccccc---------eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 300 NQRANSLLNSYSDYED---------SVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 300 ~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.+.-++++.|+. .|++|+|+|... .|+++|.||++.+||-+
T Consensus 232 ----~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 232 ----PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKD 281 (347)
T ss_pred ----ccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecch
Confidence 133344555552 578999999876 89999999999999853
No 99
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.3e-26 Score=178.51 Aligned_cols=266 Identities=16% Similarity=0.184 Sum_probs=207.1
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v 95 (346)
...|+.+.+++....|++++ -++.+.++++... .....+.|..++.+++|.+ ...+++ |+.|+.|++
T Consensus 13 ~d~IS~v~f~~~~~~LLvss----WDgslrlYdv~~~----~l~~~~~~~~plL~c~F~d-~~~~~~----G~~dg~vr~ 79 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSS----WDGSLRLYDVPAN----SLKLKFKHGAPLLDCAFAD-ESTIVT----GGLDGQVRR 79 (323)
T ss_pred hhceeeEEEcCcCCcEEEEe----ccCcEEEEeccch----hhhhheecCCceeeeeccC-CceEEE----eccCceEEE
Confidence 45678888888888888875 4688889988775 3355667999999999998 445555 579999999
Q ss_pred EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (346)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (346)
+|+. . .....+..|...|.|+.+++... .++++++|+.|++||.+.......... ...|.++.
T Consensus 80 ~Dln---------~-~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~------~kkVy~~~ 142 (323)
T KOG1036|consen 80 YDLN---------T-GNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQ------GKKVYCMD 142 (323)
T ss_pred EEec---------C-CcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccccccccc------CceEEEEe
Confidence 9997 2 33345668999999999997655 489999999999999986332222221 22677776
Q ss_pred eCCCCCcEEEEecCCeEEEEEccCCCccceeeccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---cceeee
Q 019059 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQEL 248 (346)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~ 248 (346)
.. +..|++|+.+..+.+||+++.....+..... ++|+++-|++. -+++++-||.|.+=.+.... .....|
T Consensus 143 v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaF 219 (323)
T KOG1036|consen 143 VS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAF 219 (323)
T ss_pred cc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCchHHhhhceeE
Confidence 64 6789999999999999999887655443222 99999999877 78889999998876655421 123344
Q ss_pred cCCC---------cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059 249 PGHT---------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319 (346)
Q Consensus 249 ~~~~---------~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (346)
+.|. .+|++++|+|-. ..|+||+.||.|.+||+.. .+.+..+......|.+
T Consensus 220 kCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~-------------------rKrl~q~~~~~~SI~s 279 (323)
T KOG1036|consen 220 KCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFN-------------------RKRLKQLAKYETSISS 279 (323)
T ss_pred EeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcc-------------------hhhhhhccCCCCceEE
Confidence 4443 479999999998 8999999999999999998 7888888887778999
Q ss_pred EEeCCCCCcEEEEeec
Q 019059 320 LAWSSREPWIFASLSY 335 (346)
Q Consensus 320 ~~~~~~~~~~l~s~~~ 335 (346)
++|+.+|. +||.++.
T Consensus 280 lsfs~dG~-~LAia~s 294 (323)
T KOG1036|consen 280 LSFSMDGS-LLAIASS 294 (323)
T ss_pred EEeccCCC-eEEEEec
Confidence 99999997 7887763
No 100
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.3e-27 Score=178.25 Aligned_cols=246 Identities=13% Similarity=0.203 Sum_probs=195.5
Q ss_pred cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCc
Q 019059 11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGES 90 (346)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d 90 (346)
.|..+.|+++.+..+.++.-+.. ...+....+|.-.+.+ ..-+..+|.+.|+++...-+.+++++ |+.|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFs----caKD~~~~vw~s~nGe---rlGty~GHtGavW~~Did~~s~~liT----GSAD 73 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFS----CAKDSTPTVWYSLNGE---RLGTYDGHTGAVWCCDIDWDSKHLIT----GSAD 73 (327)
T ss_pred ccccCccccceEEecCCCcEEEE----ecCCCCceEEEecCCc---eeeeecCCCceEEEEEecCCcceeee----cccc
Confidence 35557899999998888866643 3566777777654432 34677899999999999999999988 5799
Q ss_pred ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE----ecCCeEEEEEcCCCC-------CCcee
Q 019059 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS----IDEENIFLWSLDCSN-------KNAQV 159 (346)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~d~~i~vwd~~~~~-------~~~~~ 159 (346)
.++++||++ .++.+..++ ...+|..+.|+++|+.++++. +..+.|.++|++... ...++
T Consensus 74 ~t~kLWDv~---------tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 74 QTAKLWDVE---------TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred ceeEEEEcC---------CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 999999999 889988884 467899999999999533333 235789999998432 11122
Q ss_pred eecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEE
Q 019059 160 QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLW 236 (346)
Q Consensus 160 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~ 236 (346)
. .+...++.+-|.|.++.|+++..||.|..||+++++....-...| |+.+.++|+.. ++++++.|.+-++|
T Consensus 144 ~-----t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 144 P-----TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLV 217 (327)
T ss_pred c-----CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceee
Confidence 1 233578899999999999999999999999999987665554455 99999999998 99999999999999
Q ss_pred EcccCC------------------------------------------------------cceeeecCCCcceEEEEeCC
Q 019059 237 DLRMLK------------------------------------------------------APIQELPGHTHWTWAVCCNP 262 (346)
Q Consensus 237 d~~~~~------------------------------------------------------~~~~~~~~~~~~v~~v~~~~ 262 (346)
|.++.. +.+..+++|-++|++|+|+|
T Consensus 218 D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 218 DVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred eccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence 987542 01223367999999999999
Q ss_pred CCCcEEEEecCCCeEEEEecCC
Q 019059 263 EYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 263 ~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+| ...++|++||.|++.-...
T Consensus 298 dG-ksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 298 DG-KSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CC-cccccCCCCceEEEEEecc
Confidence 99 9999999999999986654
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=6.7e-29 Score=197.91 Aligned_cols=245 Identities=16% Similarity=0.259 Sum_probs=202.4
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
..+..|.+.+.++.|-++...|++ +|.|..|++|+.. ........++.+..+.|+.++|.+++.+ +++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlat----gg~Dr~Ik~W~v~-------~~k~~~~~tLaGs~g~it~~d~d~~~~~-~iA 236 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLAT----GGSDRIIKLWNVL-------GEKSELISTLAGSLGNITSIDFDSDNKH-VIA 236 (459)
T ss_pred hhhhccccccceeEEccCcchhhh----cchhhhhhhhhcc-------cchhhhhhhhhccCCCcceeeecCCCce-EEe
Confidence 445679999999999998788877 5899999999987 2234566778888899999999999997 777
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeC
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYD 217 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~ 217 (346)
++.|+.+++|+++..+... ...+|...|+++.|......+++++.|.+|++||+....+.+++.... +..|..+
T Consensus 237 as~d~~~r~Wnvd~~r~~~-----TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~ 311 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRH-----TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS 311 (459)
T ss_pred ecCCCceeeeeccchhhhh-----hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec
Confidence 7889999999998655332 235688899999998766668999999999999999999988887666 8888877
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (346)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 297 (346)
+ . .+++|..|++|++||+|. ..+......+. .|+++..++++ ..|.+.+.|.++.+.|+++
T Consensus 312 ~--~-~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt------------- 372 (459)
T KOG0288|consen 312 I--S-DVISGHFDKKVRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRT------------- 372 (459)
T ss_pred c--e-eeeecccccceEEEeccC-CceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccc-------------
Confidence 3 2 789999999999999997 55677777654 99999999999 8888889999999999998
Q ss_pred Ccccccccccccccc----ccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 298 SPNQRANSLLNSYSD----YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 298 ~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
.+..+.+.. ..+..+.+.|||++. ++++||.||.|+||++.+
T Consensus 373 ------~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 373 ------KEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFT 418 (459)
T ss_pred ------ccEEEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccC
Confidence 555544432 122378999999997 999999999999999753
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.9e-28 Score=186.46 Aligned_cols=252 Identities=22% Similarity=0.381 Sum_probs=207.6
Q ss_pred EEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcE
Q 019059 57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDK 136 (346)
Q Consensus 57 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 136 (346)
..+.+.+|.+.|+.++.....+ ++.+ .+.|.+.+||.++ .+.++.++.+|.+.|+++.|++.+. ++
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqp-i~gt---ASADhTA~iWs~E---------sg~CL~~Y~GH~GSVNsikfh~s~~-L~ 205 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQP-ICGT---ASADHTARIWSLE---------SGACLATYTGHTGSVNSIKFHNSGL-LL 205 (481)
T ss_pred ehhhhcccccceeeehhhcCCc-ceee---cccccceeEEeec---------cccceeeecccccceeeEEeccccc-eE
Confidence 3467889999999999876555 4443 3789999999999 8999999999999999999999888 56
Q ss_pred EEEecCCeEEEEEcC------CCC-----------------------------CCceeeecccCCCceeeEEEEeCCCCC
Q 019059 137 LVSIDEENIFLWSLD------CSN-----------------------------KNAQVQSKQSSGMLHYLSGGAWDPHDV 181 (346)
Q Consensus 137 ~~~~~d~~i~vwd~~------~~~-----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 181 (346)
++++.|++-.||... ... ...........+|...|.+..|...++
T Consensus 206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence 777789999999721 100 011112223456778888889999999
Q ss_pred cEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEE
Q 019059 182 NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV 258 (346)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v 258 (346)
.+++++.|.+-.+||+++++.+..+. +| .+.++-+|..+ ++++.+.|.+.++||+|..-..+..|++|...|+++
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~ 363 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV 363 (481)
T ss_pred eeeeeeccccceeeeeccCceecccc-CcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEE
Confidence 99999999999999999999988887 66 88888899988 999999999999999997666788999999999999
Q ss_pred EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCe
Q 019059 259 CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR 338 (346)
Q Consensus 259 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 338 (346)
.|..+. .+++|+.|.+|+|||++. ...++.++.- .++++.++.+..++ +++.--..+.
T Consensus 364 vF~~dd--~vVSgSDDrTvKvWdLrN------------------MRsplATIRt-dS~~NRvavs~g~~-iIAiPhDNRq 421 (481)
T KOG0300|consen 364 VFNTDD--RVVSGSDDRTVKVWDLRN------------------MRSPLATIRT-DSPANRVAVSKGHP-IIAIPHDNRQ 421 (481)
T ss_pred EEecCC--ceeecCCCceEEEeeecc------------------ccCcceeeec-CCccceeEeecCCc-eEEeccCCce
Confidence 999875 689999999999999997 2455666543 45689999998776 8888888889
Q ss_pred EEEeeecC
Q 019059 339 VRNHMLEK 346 (346)
Q Consensus 339 v~vw~~~~ 346 (346)
|++||+.|
T Consensus 422 vRlfDlnG 429 (481)
T KOG0300|consen 422 VRLFDLNG 429 (481)
T ss_pred EEEEecCC
Confidence 99999875
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.7e-28 Score=202.93 Aligned_cols=248 Identities=18% Similarity=0.294 Sum_probs=200.6
Q ss_pred cccceE---EeeecCC-CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059 64 HPNEIW---DLSSCPF-DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 64 h~~~v~---~~~~~~~-~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 139 (346)
|...|. .+..++. +++|++ ||.||.|++|++....... ....+..+..|.+.|+.+....+++. ++++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfT----gGRDg~i~~W~~~~d~~~~---s~~~~asme~HsDWVNDiiL~~~~~t-lIS~ 91 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFT----GGRDGIIRLWSVTQDSNEP---STPYIASMEHHSDWVNDIILCGNGKT-LISA 91 (735)
T ss_pred ccccccchhhccccCCCCceEEe----cCCCceEEEeccccccCCc---ccchhhhhhhhHhHHhhHHhhcCCCc-eEEe
Confidence 444455 5555544 455776 5899999999998433221 22246778899999999999999874 7888
Q ss_pred ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe-CCCCCcEEEEecCCeEEEEEccCCCc--cceee--------c
Q 019059 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-DPHDVNAVAATCESSVQFWDLRSMGK--TNSIE--------H 208 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~--------~ 208 (346)
+.|-+|++|+...+.. ........|...|.++++ .++...+++|+-|+.|.+||++++.. +..+. .
T Consensus 92 SsDtTVK~W~~~~~~~---~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNT---FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred cCCceEEEeecccCcc---hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 8899999999986541 122223447789999999 77778888888999999999998732 22221 1
Q ss_pred cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059 209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (346)
Q Consensus 209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~ 285 (346)
++ |++++.++.+. ++++|+.++.+++||.++ ...+..+++|+..|..+..+++| ..++++|.||+|++||+..
T Consensus 169 G~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgq- 244 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQ- 244 (735)
T ss_pred CCccceeeeecCCcce-EEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccc-
Confidence 33 99999999996 999999999999999998 55677888999999999999999 9999999999999999998
Q ss_pred CCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
..+++++..|...|+++..+|+-. .+.+|+.||.|..=|+.
T Consensus 245 ------------------QrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 245 ------------------QRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLR 285 (735)
T ss_pred ------------------cceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccC
Confidence 899999999999999999999886 89999999999876663
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=9.1e-27 Score=188.23 Aligned_cols=284 Identities=18% Similarity=0.285 Sum_probs=211.0
Q ss_pred eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCe----------------EEEeeeeccccceEEeeecCCCC
Q 019059 15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE----------------LICEGLFSHPNEIWDLSSCPFDQ 78 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~h~~~v~~~~~~~~~~ 78 (346)
+.+.+.++...++..+...+ +.++.|.-|++...... +.... .+|...|.+++.++|++
T Consensus 141 H~~s~~~vals~d~~~~fsa----sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSA----SKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDGK 215 (479)
T ss_pred ccCcceEEEeeccccceeec----CCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcCCCc
Confidence 44556666666666555443 45566666665543211 11111 37889999999999999
Q ss_pred ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce
Q 019059 79 RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ 158 (346)
Q Consensus 79 ~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~ 158 (346)
+|++ |+.|..|.||+.+ +.+.++.+.+|.+.|.+++|-.... -+++++.|+.|++|+++.....
T Consensus 216 ylat----gg~d~~v~Iw~~~---------t~ehv~~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s~v-- 279 (479)
T KOG0299|consen 216 YLAT----GGRDRHVQIWDCD---------TLEHVKVFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLSYV-- 279 (479)
T ss_pred EEEe----cCCCceEEEecCc---------ccchhhcccccccceeeeeeecCcc-ceeeeecCCceEEEehhHhHHH--
Confidence 9998 5899999999999 7889999999999999999976544 4888889999999999854322
Q ss_pred eeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEE
Q 019059 159 VQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWD 237 (346)
Q Consensus 159 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d 237 (346)
....+|...|.++....-.+.+-+++.|+++++|++.....+.....+. +.|++|-.+. .+++|+.+|.|.+|+
T Consensus 280 ---etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 280 ---ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWS 354 (479)
T ss_pred ---HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEee
Confidence 2345688899999887767766667799999999996544433322222 9999998776 489999999999999
Q ss_pred cccCCcceeeec-CC-----------CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccc
Q 019059 238 LRMLKAPIQELP-GH-----------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS 305 (346)
Q Consensus 238 ~~~~~~~~~~~~-~~-----------~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (346)
+.+ ++|+.+.. .| ..+|++++..|.. .++|+|+.+|.|++|-+...-. .-.
T Consensus 355 ~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r---------------~i~ 417 (479)
T KOG0299|consen 355 LLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLR---------------AIN 417 (479)
T ss_pred ecc-cCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCcc---------------ccc
Confidence 987 55665543 12 2389999999999 9999999999999999987100 024
Q ss_pred cccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059 306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw 342 (346)
++..+. -.+.|++++|+++|+++++..+....+--|
T Consensus 418 ~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 418 LLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred eeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 444444 456799999999998788877776665555
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=2.9e-27 Score=181.12 Aligned_cols=284 Identities=14% Similarity=0.221 Sum_probs=202.2
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCC-CceEEEEeecCCcceEEEEecCcccC-CCCCccceeee-----
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD-QRIFSTVFSTGESYGAAIWQIPELYG-QLNSPQLERIA----- 114 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~----- 114 (346)
..|.-+.++++.. ....|.+.|+++...+.. +++++ |+.||.|.|||++.... +.+.-..+.+.
T Consensus 25 rRil~L~Ln~d~d-----~~r~HgGsvNsL~id~tegrymlS----Ggadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~ 95 (397)
T KOG4283|consen 25 RRILSLQLNNDKD-----FVRPHGGSVNSLQIDLTEGRYMLS----GGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQ 95 (397)
T ss_pred hhhheeeccCCcc-----eeccCCCccceeeeccccceEEee----cCCCccEEEEEeccccchhhccceeheeeecccc
Confidence 3455566666533 234699999999998864 45555 68999999999984321 11111111111
Q ss_pred eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC---cEEEEecCCe
Q 019059 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV---NAVAATCESS 191 (346)
Q Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~ 191 (346)
.-.+|+-.|..+.|-|-...++.+++.|.++++||.++.+....+... ..|++.+++|-.. .++++..+-.
T Consensus 96 h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me------~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 96 HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME------GKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC------ceeehhhcChhhhcceEEEEecCCCc
Confidence 124678899999999999887888899999999999976644443332 2788888988543 4566667889
Q ss_pred EEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee--------------ecCCCcc
Q 019059 192 VQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE--------------LPGHTHW 254 (346)
Q Consensus 192 i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~~~~ 254 (346)
|++.|+.+|...+.+. +| |.++.|+|..+++|++|+.||.|++||+|....+... -..|.+.
T Consensus 170 VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred EEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence 9999999999999888 77 9999999999999999999999999999975333322 2357788
Q ss_pred eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCC--------------------c--------ccccccc
Q 019059 255 TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES--------------------P--------NQRANSL 306 (346)
Q Consensus 255 v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------------~--------~~~~~~~ 306 (346)
++.++|+.++ .++++.+.|..+++|+...+...+......... | ....+..
T Consensus 249 vngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ 327 (397)
T KOG4283|consen 249 VNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSF 327 (397)
T ss_pred eeeeeecccc-hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceE
Confidence 9999999999 999999999999999998864332211110000 0 0123444
Q ss_pred ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
+..+..|-..|.+..+.|+-+ ...++..|+.+..|.
T Consensus 328 ir~l~~h~k~i~c~~~~~~fq-~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 328 VRRLSTHLKRINCAAYRPDFE-QCFTGDMNGNIYMWS 363 (397)
T ss_pred EEeeecccceeeEEeecCchh-hhhccccCCcccccc
Confidence 555666666677777777665 566777777777774
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=7.2e-27 Score=197.68 Aligned_cols=253 Identities=17% Similarity=0.279 Sum_probs=207.7
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEE-eeecCCCC-ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWD-LSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 116 (346)
+.++.+.+|.--. +..+....+.+|.+-|.. +++-+..+ .++. |+.|..+.+|... ...++.++
T Consensus 32 sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~----g~~D~~i~v~~~~---------~~~P~~~L 97 (745)
T KOG0301|consen 32 SRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVV----GGMDTTIIVFKLS---------QAEPLYTL 97 (745)
T ss_pred CCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEe----ecccceEEEEecC---------CCCchhhh
Confidence 4577777775433 233444567778888887 88876444 4555 5899999999998 78899999
Q ss_pred eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE
Q 019059 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD 196 (346)
Q Consensus 117 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 196 (346)
++|+..|++++...++. ++++++|.++++|........ ..+|...|.+++.-|++ .+++|+.|.+|++|.
T Consensus 98 kgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l~~~-------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk 167 (745)
T KOG0301|consen 98 KGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGELVYS-------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWK 167 (745)
T ss_pred hccccceeeeecCCcCc--eEecccccceEEecchhhhcc-------cCCcchheeeeeecCCC-cEEeccCcceeeecc
Confidence 99999999999888887 899999999999998743211 45788899999999977 799999999999997
Q ss_pred ccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC
Q 019059 197 LRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT 273 (346)
Q Consensus 197 ~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~ 273 (346)
- ++.++++. +| |+.+++-+++. |++++.||.|++|++. +..+.++.+|+.-+.++...+++ ..++++++
T Consensus 168 ~--~~~l~tf~-gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~-~~Ivs~gE 239 (745)
T KOG0301|consen 168 G--GTLLKTFS-GHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSD-GLIVSTGE 239 (745)
T ss_pred C--Cchhhhhc-cchhheeeeEEecCCC--eEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCC-CeEEEecC
Confidence 5 66777777 78 99999999875 8899999999999995 56889999999999999977777 89999999
Q ss_pred CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 274 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
|++++||+.. ++.+.+.-....|+++.+-++|. +++|+.||.||||..++
T Consensus 240 DrtlriW~~~---------------------e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 240 DRTLRIWKKD---------------------ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CceEEEeecC---------------------ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEecc
Confidence 9999999886 34555544455699999999987 78888999999998763
No 107
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.9e-26 Score=174.83 Aligned_cols=270 Identities=17% Similarity=0.263 Sum_probs=196.3
Q ss_pred eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcEEEE
Q 019059 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVS 139 (346)
Q Consensus 62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~ 139 (346)
.+|.+-|+++.|.+.|++++++ +.|++++|||.+. ...+..+....+.|.+.|..+.|.+- |+ +++++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtC----SsDq~vkI~d~~~-----~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq-vvA~c 79 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATC----SSDQTVKIWDSTS-----DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ-VVATC 79 (361)
T ss_pred cCCcceeeeeeecccCceeeec----cCCCcEEEEeccC-----CCCceEEeeeEEecCCcEEEEEecCccccc-eEEEE
Confidence 4788999999999999999985 7999999999752 34467888889999999999999643 44 45566
Q ss_pred ecCCeEEEEEcCCCCC----CceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCccc------eee
Q 019059 140 IDEENIFLWSLDCSNK----NAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTN------SIE 207 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~------~~~ 207 (346)
+.|+++.||.-..... ..-............|+.+.|.|. |-.+++++.||.||||+....-.+. .+.
T Consensus 80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 8999999998632111 011112223344568999999985 4568888899999999876543222 221
Q ss_pred -----cc--c--eeEEEeCCCC--CcEEEEecCC-----CeEEEEEcccCC---cceeeecCCCcceEEEEeCCCCC---
Q 019059 208 -----HA--H--VRNVDYDTKK--KHLLVTAADE-----SGIHLWDLRMLK---APIQELPGHTHWTWAVCCNPEYD--- 265 (346)
Q Consensus 208 -----~~--~--v~~~~~~~~~--~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~~v~~v~~~~~~~--- 265 (346)
++ + ..|+.|+|.. +.+|+.|+.+ +.+.||...... ..+.++.+|+.+|+.++|.|+-.
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence 11 1 7899998753 2378888776 478899766533 24556779999999999999742
Q ss_pred cEEEEecCCCeEEEEecCCCCCCCCCcc-cccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 266 GFILSAGTDSTVNLWLVSTSNHDELPSE-SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 266 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
.+||+++.|| |+||.+.......+..+ .......+..-+.+..+..|.+.|+.+.|+-.|. +|++.|.||.||+|.
T Consensus 240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWK 316 (361)
T ss_pred eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehh
Confidence 6899999999 99999986322211111 1111122234566777889999999999999996 999999999999995
No 108
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2e-26 Score=177.49 Aligned_cols=239 Identities=15% Similarity=0.174 Sum_probs=188.8
Q ss_pred ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (346)
Q Consensus 65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 144 (346)
.+.|.++.|+|....|+++ +.||.+++|+++ .......+ .|..++.+++|.++.+ +++++-||.
T Consensus 13 ~d~IS~v~f~~~~~~LLvs----sWDgslrlYdv~---------~~~l~~~~-~~~~plL~c~F~d~~~--~~~G~~dg~ 76 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVS----SWDGSLRLYDVP---------ANSLKLKF-KHGAPLLDCAFADEST--IVTGGLDGQ 76 (323)
T ss_pred hhceeeEEEcCcCCcEEEE----eccCcEEEEecc---------chhhhhhe-ecCCceeeeeccCCce--EEEeccCce
Confidence 4789999999999999986 599999999998 33343344 7899999999998766 788888999
Q ss_pred EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcE
Q 019059 145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHL 223 (346)
Q Consensus 145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~ 223 (346)
|+.+|+.+++.. .+ ..|...+.++.+++....+++|+.|++|++||.+.......+..+. |.++...- + .
T Consensus 77 vr~~Dln~~~~~-~i-----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g--~-~ 147 (323)
T KOG1036|consen 77 VRRYDLNTGNED-QI-----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG--N-R 147 (323)
T ss_pred EEEEEecCCcce-ee-----ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC--C-E
Confidence 999999976532 22 2366699999999988899999999999999999877777776555 88888763 3 6
Q ss_pred EEEecCCCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059 224 LVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR 302 (346)
Q Consensus 224 l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (346)
|++|+.+..|.+||+|+...+.+... .-+-.+.||++-|++ .-+++++-||.|.+=.+... ++
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s--~~------------- 211 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDS--EE------------- 211 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCc--hH-------------
Confidence 88889999999999998776553322 345678999999977 77888999999988666651 00
Q ss_pred ccccccccccccc---------eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 303 ANSLLNSYSDYED---------SVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 303 ~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.......++.|.. +|++|+|+|-.+ .|+||+.||.|.+||+.
T Consensus 212 ~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 212 AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLF 262 (323)
T ss_pred HhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCc
Confidence 0133344555542 799999999876 89999999999999974
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=179.27 Aligned_cols=274 Identities=11% Similarity=0.145 Sum_probs=190.1
Q ss_pred EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCc
Q 019059 56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD 135 (346)
Q Consensus 56 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 135 (346)
+....+.+|.+.|++++|+.+|+.|+++ +.|+.|++|++++-.. ...+.++.- ..-+.-+.+.|+||.+.+
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~----~~Dr~Ir~w~~~DF~~----~eHr~~R~n-ve~dhpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATI----SGDRSIRLWDVRDFEN----KEHRCIRQN-VEYDHPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEE----eCCceEEEEecchhhh----hhhhHhhcc-ccCCCceEEEECCCcceE
Confidence 3346678999999999999999999997 4899999999983110 011111111 112345789999999976
Q ss_pred EEEEecCCeEEEEEcCCCCCCc---eee-ec---ccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec
Q 019059 136 KLVSIDEENIFLWSLDCSNKNA---QVQ-SK---QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH 208 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~---~~~-~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 208 (346)
+++.-....+++|.+...+.-. ... .. ....|.-.+..+-....+.+|++++.|..|.+||++ |+.+..+..
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 6666667899999886433211 100 00 122344456666777778899999999999999999 888877764
Q ss_pred cc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-------cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059 209 AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 279 (346)
Q Consensus 209 ~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i 279 (346)
.. -+..+.+|+|+ ++++++..-.|++|.+--.+ ..+..+++|...|..++|+++. ..+++.|.||+++|
T Consensus 227 nq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRI 304 (420)
T ss_pred ccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEE
Confidence 44 77889999999 78888888899999864211 2456788999999999999999 99999999999999
Q ss_pred EecCCCCCCCCCcc----------cccCCccc-----------------------ccccccccc-ccccceeeEEEeCCC
Q 019059 280 WLVSTSNHDELPSE----------SLVESPNQ-----------------------RANSLLNSY-SDYEDSVYGLAWSSR 325 (346)
Q Consensus 280 wd~~~~~~~~~~~~----------~~~~~~~~-----------------------~~~~~~~~~-~~~~~~v~~~~~~~~ 325 (346)
||+.-.-....... .....+.+ ..++....+ ..|...|.+++|+++
T Consensus 305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 99865311100000 00000000 011111111 247788999999999
Q ss_pred CCcEEEEeecCCeEEEee
Q 019059 326 EPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 326 ~~~~l~s~~~d~~v~vw~ 343 (346)
|+ ++++++ |+.+++..
T Consensus 385 g~-~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 385 GK-YIATCG-DRYVRVIR 400 (420)
T ss_pred Cc-EEeeec-ceeeeeec
Confidence 97 888888 78888764
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.6e-27 Score=180.18 Aligned_cols=269 Identities=16% Similarity=0.298 Sum_probs=212.5
Q ss_pred CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec------CcccC----------
Q 019059 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI------PELYG---------- 103 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~------~~~~~---------- 103 (346)
.+....+|.+.... ...+..+|.+.|+++.|++.+..++++ +.|++..||.. +.+..
T Consensus 168 ADhTA~iWs~Esg~---CL~~Y~GH~GSVNsikfh~s~~L~lTa----SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 168 ADHTARIWSLESGA---CLATYTGHTGSVNSIKFHNSGLLLLTA----SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred cccceeEEeecccc---ceeeecccccceeeEEeccccceEEEc----cCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 34456677666643 345677999999999999988777664 68889999973 21100
Q ss_pred --------------CCCCcc-ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 104 --------------QLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 104 --------------~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
..+.+. ..++..+.+|.+.|.+..|-..|++ ++++++|.+..+||++++..... ..+|.
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTAnlwDVEtge~v~~-----LtGHd 314 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTANLWDVETGEVVNI-----LTGHD 314 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccccceeeeeccCceecc-----ccCcc
Confidence 011112 3467788999999999999999986 88889999999999998764333 35678
Q ss_pred eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce
Q 019059 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI 245 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 245 (346)
..++.++-+|..+.+++++.|.+.++||++..-.......+| |+++.|..+.+ +++|++|.+|++||+++.+.++
T Consensus 315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRspl 392 (481)
T KOG0300|consen 315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPL 392 (481)
T ss_pred hhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcc
Confidence 899999999999999999999999999999654444444577 99999998875 8999999999999999988899
Q ss_pred eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccc-----ccccccceeeEE
Q 019059 246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN-----SYSDYEDSVYGL 320 (346)
Q Consensus 246 ~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~ 320 (346)
.++. ...+++.++.+..+ ..|+.--.+..|++||++. ..+. .-.+|...|+|.
T Consensus 393 ATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG--------------------~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 393 ATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNG--------------------NRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred eeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCC--------------------CccccCCcccccccceeeeee
Confidence 8887 47889999999887 8888888889999999985 3333 335799999999
Q ss_pred EeCCCCC-cEEEEeecCCeEEEeeec
Q 019059 321 AWSSREP-WIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 321 ~~~~~~~-~~l~s~~~d~~v~vw~~~ 345 (346)
+|..+.+ .-|++++.|+.+.=|++.
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred eccccCcccccccccccceeeeeEec
Confidence 9986433 137899999999999874
No 111
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-26 Score=185.09 Aligned_cols=278 Identities=14% Similarity=0.193 Sum_probs=200.6
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCC-------CCceEEEEeecCCcceEEEEecCcccCCCC--------
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF-------DQRIFSTVFSTGESYGAAIWQIPELYGQLN-------- 106 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~-------- 106 (346)
..+-++-+.+....+....-+--+....|++|... |++++. |..|..|.|||++-......
T Consensus 150 s~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAi----Gtmdp~IeIWDLDI~d~v~P~~~LGs~~ 225 (463)
T KOG0270|consen 150 SYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAI----GTMDPEIEIWDLDIVDAVLPCVTLGSKA 225 (463)
T ss_pred eEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEE----eccCceeEEeccccccccccceeechhh
Confidence 44555555555443433221112234457777432 345555 46899999999973311100
Q ss_pred ----CccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC-C
Q 019059 107 ----SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-V 181 (346)
Q Consensus 107 ----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 181 (346)
...++.-....+|++.|.+++|+..-++++++++.|.+|++||+.+++....+. .|...|.+++|+|.. .
T Consensus 226 sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-----~~~k~Vq~l~wh~~~p~ 300 (463)
T KOG0270|consen 226 SKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-----HHGKKVQTLEWHPYEPS 300 (463)
T ss_pred hhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-----hcCCceeEEEecCCCce
Confidence 001111112346899999999999988877777899999999999987654443 255589999999965 4
Q ss_pred cEEEEecCCeEEEEEccCCCcc-ceeec-cceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE
Q 019059 182 NAVAATCESSVQFWDLRSMGKT-NSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC 259 (346)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~-~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 259 (346)
.|++|+.|+++.+.|.|..... ..++. +.|..++|+|...+.++++..||+|+-+|+|+.++++.+++.|..+|.+|+
T Consensus 301 ~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~ 380 (463)
T KOG0270|consen 301 VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS 380 (463)
T ss_pred EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence 5778889999999999953322 22332 239999999999988999999999999999998899999999999999999
Q ss_pred eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059 260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339 (346)
Q Consensus 260 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v 339 (346)
+++.-+.++++++.|+.|++|++... .+..+....-.-+...|+++.|+-...++.|+..+.+
T Consensus 381 ~n~~~p~~l~t~s~d~~Vklw~~~~~-----------------~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~ 443 (463)
T KOG0270|consen 381 VNIQTPGLLSTASTDKVVKLWKFDVD-----------------SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL 443 (463)
T ss_pred ecCCCCcceeeccccceEEEEeecCC-----------------CCcccccccccccceeecccCCCcceEEEecCccceE
Confidence 99998899999999999999999861 0111111111112367889999888889999999999
Q ss_pred EEeeec
Q 019059 340 RNHMLE 345 (346)
Q Consensus 340 ~vw~~~ 345 (346)
+|||+-
T Consensus 444 ~vwd~~ 449 (463)
T KOG0270|consen 444 RVWDIF 449 (463)
T ss_pred EEeecc
Confidence 999974
No 112
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=9.4e-27 Score=197.87 Aligned_cols=242 Identities=14% Similarity=0.193 Sum_probs=198.8
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC--CCCcEEEEec
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS--GRHDKLVSID 141 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~ 141 (346)
-...+.+++.+|++++|++ |..-|.++||++. ....+..+..|+.+|.|+.|+.. +..++++++.
T Consensus 458 ~r~G~R~~~vSp~gqhLAs----GDr~GnlrVy~Lq---------~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLAS----GDRGGNLRVYDLQ---------ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred cccceEEEEECCCcceecc----cCccCceEEEEeh---------hhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 3457899999999999998 5788999999998 67888889999999999999843 3345555688
Q ss_pred CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC--CcEEEEecCCeEEEEEccCCCccceeec-----cc--ee
Q 019059 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD--VNAVAATCESSVQFWDLRSMGKTNSIEH-----AH--VR 212 (346)
Q Consensus 142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~--v~ 212 (346)
|..|.|||+...-.. .....+|...|+++.|...| ..+++++.|..|.+--.+.......+.. .+ ++
T Consensus 525 dRlIHV~Dv~rny~l----~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDL----VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred CceEEEEecccccch----hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 999999999854332 23345688899999998877 6688888898776533332111122221 22 99
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC---CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCC
Q 019059 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE 289 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 289 (346)
.++..|... ++++++.|..|+|||+.+ ++..+.|++ |.+..-.+...|.| .||++...|.++.++|..+
T Consensus 601 Dm~Vdp~~k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~s----- 672 (1080)
T KOG1408|consen 601 DMAVDPTSK-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVS----- 672 (1080)
T ss_pred EeeeCCCcc-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEecc-----
Confidence 999999998 899999999999999998 556777774 66778889999999 9999999999999999999
Q ss_pred CCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 290 LPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++++.+..+|...|+.+.|.+|-+ .|++.+.||.|.||.+.
T Consensus 673 --------------gEcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 673 --------------GECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLP 713 (1080)
T ss_pred --------------chhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECc
Confidence 999999999999999999999997 88999999999999873
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.9e-26 Score=186.37 Aligned_cols=252 Identities=16% Similarity=0.214 Sum_probs=201.1
Q ss_pred EeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCC-CCc-------cceeeeee-eccCCceEEEEe
Q 019059 58 CEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL-NSP-------QLERIAAL-DAHVGKINCVLW 128 (346)
Q Consensus 58 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~-~~~-------~~~~~~~~-~~~~~~i~~~~~ 128 (346)
......|.-.|.+++++|++++.+.+ +.+++|.-|++....... ..+ .+.+...- +.|...+.+++.
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsa----sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSA----SKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEeeccccceeec----CCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 35566799999999999999999986 689999999987432210 000 11111112 388899999999
Q ss_pred ecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec
Q 019059 129 WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH 208 (346)
Q Consensus 129 ~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 208 (346)
++||++ +++++.|..|.||+.++.+.... ..+|...|.+++|-.....+++++.|..+++|++.....+.++.
T Consensus 211 S~Dgky-latgg~d~~v~Iw~~~t~ehv~~-----~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly- 283 (479)
T KOG0299|consen 211 SSDGKY-LATGGRDRHVQIWDCDTLEHVKV-----FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY- 283 (479)
T ss_pred cCCCcE-EEecCCCceEEEecCcccchhhc-----ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-
Confidence 999996 77778899999999998765433 45688899999999888889999999999999999988888777
Q ss_pred cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059 209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (346)
Q Consensus 209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~ 285 (346)
+| |.+|.-..-.+ .+.+|+.|+++++|++.. .....+.+|.+.+-|++|-.+ ..|++|+.||.|.+|++..
T Consensus 284 GHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~K- 357 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLK- 357 (479)
T ss_pred CCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecc-
Confidence 66 88888877776 777788999999999964 345567789999999999766 5799999999999999987
Q ss_pred CCCCCCcccccCCccccccccccccc------------cccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 286 NHDELPSESLVESPNQRANSLLNSYS------------DYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.+++++.. .+..+|++++..|... ++++|+.+|.|++|.++
T Consensus 358 ------------------Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 358 ------------------KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIE 410 (479)
T ss_pred ------------------cCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEec
Confidence 33433321 1224899999999886 99999999999999875
No 114
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=201.93 Aligned_cols=230 Identities=21% Similarity=0.328 Sum_probs=195.5
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeee-eeccCCceEEEEeecCCCCcEEEEecC
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSIDE 142 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d 142 (346)
+...+.+..|. +.++++ +..+.+|++|+.. ++..+.. +.+|.+.|.++++.. +..++++++.|
T Consensus 207 ~~~~~~~~q~~--~~~~~~----~s~~~tl~~~~~~---------~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D 270 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKS----GSDDSTLHLWDLN---------NGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTD 270 (537)
T ss_pred Ccchhhhheee--cCeEEe----cCCCceeEEeecc---------cceEEEeeccCCCCCceeEEEec-CCCEEEEEecC
Confidence 55778888888 456666 4789999999988 6666666 999999999999987 44468888899
Q ss_pred CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCC
Q 019059 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTK 219 (346)
Q Consensus 143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~ 219 (346)
.++++||..+++....+. +|...+.++...+ ..+++|+.|.+|++|++.++..+..+. +| |+++..+
T Consensus 271 ~t~rvWd~~sg~C~~~l~-----gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQ-----GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD-- 340 (537)
T ss_pred CcEEeEecCCCcEEEEec-----CCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--
Confidence 999999999887655553 5777888887653 567777899999999999999998887 36 9999998
Q ss_pred CCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc
Q 019059 220 KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP 299 (346)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 299 (346)
++ ++++|+.|++|++||++. .++++.+.+|...|.++.+.+. ..+++|+.|++|++||+++
T Consensus 341 ~~-~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~--------------- 401 (537)
T KOG0274|consen 341 EP-LLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRT--------------- 401 (537)
T ss_pred CC-EEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCc---------------
Confidence 54 899999999999999997 6799999999999999988775 5799999999999999998
Q ss_pred ccccc-ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 300 NQRAN-SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 300 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
. +++.++.+|.+-|.++.+. ++ +|++++.|+.|++||.+
T Consensus 402 ----~~~c~~tl~~h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 402 ----KRKCIHTLQGHTSLVSSLLLR--DN-FLVSSSADGTIKLWDAE 441 (537)
T ss_pred ----hhhhhhhhcCCcccccccccc--cc-eeEeccccccEEEeecc
Confidence 6 8999999999988777665 43 89999999999999874
No 115
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=3.2e-26 Score=192.11 Aligned_cols=284 Identities=18% Similarity=0.253 Sum_probs=200.8
Q ss_pred CCCcceEEEeecccCCCCeEEEEEecCCCCe---EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc
Q 019059 25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTE---LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL 101 (346)
Q Consensus 25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~ 101 (346)
....+.|+++ .+++.|.+.+.....-. ........|.+.|.++.|.|-...|+++ +.|.++++||+.
T Consensus 61 ~n~eHiLava----dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa----sGDsT~r~Wdvk-- 130 (720)
T KOG0321|consen 61 PNKEHILAVA----DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA----SGDSTIRPWDVK-- 130 (720)
T ss_pred CCccceEEEe----cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc----cCCceeeeeeec--
Confidence 3455666665 46677777655432211 1124566899999999999944455554 678899999998
Q ss_pred cCCCCCccceeeee--eeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCc-------------------e--
Q 019059 102 YGQLNSPQLERIAA--LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA-------------------Q-- 158 (346)
Q Consensus 102 ~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~-------------------~-- 158 (346)
....... +.+|.+.|.+++|.+.++.++++|+.||.|.|||++...... +
T Consensus 131 -------~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 131 -------TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred -------cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 3444433 779999999999999999888888999999999987443000 0
Q ss_pred -eeecccCCCceeeEE---EEeCCCCCcEEEEec-CCeEEEEEccCCCccceee---------c---cc-eeEEEeCCCC
Q 019059 159 -VQSKQSSGMLHYLSG---GAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIE---------H---AH-VRNVDYDTKK 220 (346)
Q Consensus 159 -~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~---------~---~~-v~~~~~~~~~ 220 (346)
-.......+...+.+ +.+..|...|++++. |+.|+|||++......... . .+ +.++..+..|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 000011122223333 444557788888886 9999999999765432221 0 11 8888888889
Q ss_pred CcEEEEecCCCeEEEEEcccCCc-ceeeecCCCcce--EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccC
Q 019059 221 KHLLVTAADESGIHLWDLRMLKA-PIQELPGHTHWT--WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVE 297 (346)
Q Consensus 221 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v--~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 297 (346)
.+++|.+ .|+.|++|+++.... ++..+.++...- ..-..+|++ .++++|+.|...++|.+..
T Consensus 284 t~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~------------- 348 (720)
T KOG0321|consen 284 TYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSS------------- 348 (720)
T ss_pred CeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecC-------------
Confidence 8555555 599999999986543 455555443221 122478999 9999999999999999998
Q ss_pred CccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 298 SPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.......+.+|.-.|++++|.|..-.-++++++|.++++|++.
T Consensus 349 -----~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 349 -----PEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred -----ccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 3556677889999999999998654458889999999999974
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2e-25 Score=186.92 Aligned_cols=263 Identities=11% Similarity=0.122 Sum_probs=183.4
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
..++.+.+|++...+ ....+..+ ..+.+++|+|+++.++++ ++.++.|.+||+. ..+.+..+..
T Consensus 8 ~~d~~v~~~d~~t~~---~~~~~~~~-~~~~~l~~~~dg~~l~~~---~~~~~~v~~~d~~---------~~~~~~~~~~ 71 (300)
T TIGR03866 8 EKDNTISVIDTATLE---VTRTFPVG-QRPRGITLSKDGKLLYVC---ASDSDTIQVIDLA---------TGEVIGTLPS 71 (300)
T ss_pred cCCCEEEEEECCCCc---eEEEEECC-CCCCceEECCCCCEEEEE---ECCCCeEEEEECC---------CCcEEEeccC
Confidence 457889999876543 12333333 447789999999887665 3678899999987 4555555544
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC-eEEEEEc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-SVQFWDL 197 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~ 197 (346)
+.. +..++|+|+++.++++++.++.+++||+.+.+....+.. ...+.+++|+|++..++++..++ .+.+||.
T Consensus 72 ~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 72 GPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred CCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeC
Confidence 433 567899999986444556689999999986543222211 12467899999999998888764 5778899
Q ss_pred cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC-------cceEEEEeCCCCCcEE-
Q 019059 198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-------HWTWAVCCNPEYDGFI- 268 (346)
Q Consensus 198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~v~~v~~~~~~~~~l- 268 (346)
++++....+.... +.+++|+|++..+++++..++.|++||+++ .+.+..+..+. .....++|+|++ .++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg-~~~~ 222 (300)
T TIGR03866 145 KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDG-KTAF 222 (300)
T ss_pred CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCC-CEEE
Confidence 8877665554344 888999999984445666789999999987 33444443221 123468899999 654
Q ss_pred EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 269 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
++.+.++.+.+||+++ ++.+..+. +...+.+++|+|+++.++++.+.++.|++||+++
T Consensus 223 ~~~~~~~~i~v~d~~~-------------------~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 223 VALGPANRVAVVDAKT-------------------YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EEcCCCCeEEEEECCC-------------------CcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 4445577899999987 55554432 3346899999999984444446799999999863
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.3e-26 Score=203.93 Aligned_cols=252 Identities=17% Similarity=0.272 Sum_probs=198.8
Q ss_pred cccceEEeeecCCCCceEEEEeecC--CcceEEEEecCcccCCC---CCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTG--ESYGAAIWQIPELYGQL---NSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~--~d~~i~vw~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
+...|.++..+|++..++++ | .|+.+.+|+.+.-.... +..-.+.+.+...|.+.|.|+.|+|||++ +++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTg----Gq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~-lAs 86 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATG----GQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSY-LAS 86 (942)
T ss_pred CCeeEEEEEecCCceeEecC----CccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCe-Eee
Confidence 34679999999999988884 5 78888999987442211 11123566778899999999999999996 777
Q ss_pred EecCCeEEEEEcCCCCCCcee--------------eecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc
Q 019059 139 SIDEENIFLWSLDCSNKNAQV--------------QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN 204 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 204 (346)
|++|+.|.||+.... ..... ......+|...|..++|+|++.++++++.|++|.+|+.++.+...
T Consensus 87 GSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred ccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 789999999998731 00000 111245688899999999999999999999999999999998777
Q ss_pred eeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC------CcceEEEEeCCCCCcEEEEecC--
Q 019059 205 SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH------THWTWAVCCNPEYDGFILSAGT-- 273 (346)
Q Consensus 205 ~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~v~~~~~~~~~l~s~~~-- 273 (346)
.+. +| |..+.|+|-|+ +|++-+.|++|++|.+.+.+ ..+.+..+ ..-+..+.||||| .+|++...
T Consensus 166 vl~-~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n 241 (942)
T KOG0973|consen 166 VLR-GHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRLSWSPDG-HHLASPNAVN 241 (942)
T ss_pred eee-cccccccceEECCccC-eeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeecccCCCc-Ceecchhhcc
Confidence 777 66 99999999999 89999999999999976532 34444332 2456889999999 99988643
Q ss_pred --CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC--------CCc--------EEEEeec
Q 019059 274 --DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR--------EPW--------IFASLSY 335 (346)
Q Consensus 274 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~--------~l~s~~~ 335 (346)
-.++.|.+..+ .+.-..+-||.+++..++|+|. |.. ++|+||.
T Consensus 242 ~~~~~~~IieR~t-------------------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 242 GGKSTIAIIERGT-------------------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred CCcceeEEEecCC-------------------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 23788888887 7888889999999999999981 111 7899999
Q ss_pred CCeEEEeee
Q 019059 336 DGRVRNHML 344 (346)
Q Consensus 336 d~~v~vw~~ 344 (346)
|++|-||..
T Consensus 303 DrSlSVW~T 311 (942)
T KOG0973|consen 303 DRSLSVWNT 311 (942)
T ss_pred CccEEEEec
Confidence 999999974
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=187.44 Aligned_cols=248 Identities=16% Similarity=0.233 Sum_probs=202.4
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG 121 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (346)
..+.+|.+.+... .....--+++|.+++-+|.|.+|+++ +..+.|.+|.+. ++..+..+.+|-.
T Consensus 61 p~l~vw~i~k~~~---~~q~~v~Pg~v~al~s~n~G~~l~ag----~i~g~lYlWels---------sG~LL~v~~aHYQ 124 (476)
T KOG0646|consen 61 PLLHVWEILKKDQ---VVQYIVLPGPVHALASSNLGYFLLAG----TISGNLYLWELS---------SGILLNVLSAHYQ 124 (476)
T ss_pred ccccccccCchhh---hhhhcccccceeeeecCCCceEEEee----cccCcEEEEEec---------cccHHHHHHhhcc
Confidence 3666676655322 12334467899999999999888873 588899999999 8999999999999
Q ss_pred ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC----CceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEE
Q 019059 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK----NAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFW 195 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~ 195 (346)
.|+|+.|+.||.+ +++++.||.|.+|.+..--. ..........+|..+|+++...+- ...+++++.|.++++|
T Consensus 125 ~ITcL~fs~dgs~-iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w 203 (476)
T KOG0646|consen 125 SITCLKFSDDGSH-IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW 203 (476)
T ss_pred ceeEEEEeCCCcE-EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE
Confidence 9999999999995 88889999999999753211 111222335678889999988764 3569999999999999
Q ss_pred EccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---------------cceeeecCCCc--ceEE
Q 019059 196 DLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---------------APIQELPGHTH--WTWA 257 (346)
Q Consensus 196 d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~v~~ 257 (346)
|+..+..+.++..+. +.+++.+|.+. .+++|+.+|.|.+.++.+.. ..+..+.+|.+ .|+|
T Consensus 204 dlS~g~LLlti~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc 282 (476)
T KOG0646|consen 204 DLSLGVLLLTITFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC 282 (476)
T ss_pred EeccceeeEEEecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE
Confidence 999999988887666 99999999998 89999999999988876432 13456678888 9999
Q ss_pred EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCC
Q 019059 258 VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP 327 (346)
Q Consensus 258 v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 327 (346)
++.+-|| .+|++|+.||.|+|||+.+ .++++++....++|+.+.+.|-.+
T Consensus 283 Lais~Dg-tlLlSGd~dg~VcvWdi~S-------------------~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 283 LAISTDG-TLLLSGDEDGKVCVWDIYS-------------------KQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred EEEecCc-cEEEeeCCCCCEEEEecch-------------------HHHHHHHhhhccccceeEeecccc
Confidence 9999999 9999999999999999998 888888877778899999866543
No 119
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.1e-26 Score=198.19 Aligned_cols=242 Identities=16% Similarity=0.256 Sum_probs=193.7
Q ss_pred eeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCC----------------------------C------------
Q 019059 15 QARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGG----------------------------T------------ 54 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~----------------------------~------------ 54 (346)
+..+|.++++++++.-++.| ++|+.|++|.+-..+ .
T Consensus 266 h~gaIw~mKFS~DGKyLAsa----GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASA----GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cCCcEEEEEeCCCCceeeec----CCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 34678889999999999887 689999999886600 0
Q ss_pred -----------------eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee
Q 019059 55 -----------------ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD 117 (346)
Q Consensus 55 -----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 117 (346)
......+.+|.+.|.+|.||.+ .+|+++ +.|.+|+||++. ...+++.|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSS----SMDKTVRLWh~~---------~~~CL~~F- 406 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSS----SMDKTVRLWHPG---------RKECLKVF- 406 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEec----cccccEEeecCC---------CcceeeEE-
Confidence 0000347899999999999984 577775 799999999998 67888888
Q ss_pred ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (346)
Q Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (346)
.|.+-|+|++|+|-....+++|+-|+.|+||++...+.. ... ....-|++++|.|+|+..++|+.+|.+++|+.
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv---~W~---Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t 480 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV---DWN---DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT 480 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE---eeh---hhhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence 899999999999988877999999999999999854321 111 12348999999999999999999999999999
Q ss_pred cCCCccceee---------ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcc--eEEEEeCCCCC
Q 019059 198 RSMGKTNSIE---------HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHW--TWAVCCNPEYD 265 (346)
Q Consensus 198 ~~~~~~~~~~---------~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--v~~v~~~~~~~ 265 (346)
...+....+. .++ |+.+.|.|.....+++.+.|..|+|+|.+. ..++..|+++... -....|+.+|
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dg- 558 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDG- 558 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCC-
Confidence 8766543332 122 999999987765688888999999999986 5678888875532 3456799999
Q ss_pred cEEEEecCCCeEEEEecC
Q 019059 266 GFILSAGTDSTVNLWLVS 283 (346)
Q Consensus 266 ~~l~s~~~d~~i~iwd~~ 283 (346)
++|+++++|..|+||+..
T Consensus 559 k~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 559 KHIVSASEDSWVYIWKND 576 (712)
T ss_pred CEEEEeecCceEEEEeCC
Confidence 999999999999999973
No 120
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.8e-26 Score=176.92 Aligned_cols=242 Identities=15% Similarity=0.279 Sum_probs=191.6
Q ss_pred ccCCCCcceEEEeecccCCCCeEEEEEecC---------------CCCeEEEeeeeccccceEEeeecCCCCceEEEEee
Q 019059 22 VKADTDHTSFLTGTLSLKEENEVHLLRLSS---------------GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS 86 (346)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~---------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~ 86 (346)
..+++++.-++.|+ .+..|.++++.. ......+++++.|.++|+++.|+|....|++
T Consensus 118 aafs~DG~lvATGs----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS---- 189 (430)
T KOG0640|consen 118 AAFSPDGSLVATGS----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS---- 189 (430)
T ss_pred eeeCCCCcEEEccC----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe----
Confidence 44677888787774 456778877661 1122455889999999999999998877777
Q ss_pred cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (346)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 166 (346)
++.|++|+++|+.+ +..+.....-....+|.++.|+|.|.. ++++.+...+++||+++-+...... ....
T Consensus 190 ~srD~tvKlFDfsK-------~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~Qcfvsan--Pd~q 259 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSK-------TSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSAN--PDDQ 259 (430)
T ss_pred ccCCCeEEEEeccc-------HHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecC--cccc
Confidence 48999999999982 122222222234578999999999994 6677778899999999866443333 3456
Q ss_pred CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242 (346)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 242 (346)
|...|+++.+++.++..++++.||.|++||--+++++.++..+| |.+..|..+++ ++++.+.|..+++|.+.+.+
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe-EEeecCCcceeeeeeecCCc
Confidence 88899999999999999999999999999999999999999888 99999999999 78888999999999987633
Q ss_pred cceeee-------------------------------------------------cCCCcceEEEEeCCCCCcEEEEecC
Q 019059 243 APIQEL-------------------------------------------------PGHTHWTWAVCCNPEYDGFILSAGT 273 (346)
Q Consensus 243 ~~~~~~-------------------------------------------------~~~~~~v~~v~~~~~~~~~l~s~~~ 273 (346)
++..+ .+|.+.+..+.-+|.+ ..+++++.
T Consensus 339 -~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~-p~FmTcsd 416 (430)
T KOG0640|consen 339 -MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE-PAFMTCSD 416 (430)
T ss_pred -eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC-Cceeeecc
Confidence 22222 2578888888889998 88999999
Q ss_pred CCeEEEEecCC
Q 019059 274 DSTVNLWLVST 284 (346)
Q Consensus 274 d~~i~iwd~~~ 284 (346)
|-.+|+|-.+.
T Consensus 417 D~raRFWyrr~ 427 (430)
T KOG0640|consen 417 DFRARFWYRRV 427 (430)
T ss_pred cceeeeeeecc
Confidence 99999997653
No 121
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.9e-26 Score=189.88 Aligned_cols=238 Identities=18% Similarity=0.321 Sum_probs=192.6
Q ss_pred eEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeec-cccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059 17 RCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFS-HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v 95 (346)
..++++.+++++.-|++|+ .++.+.+|+....+. ...+.+ |...|-+++|. ..++++ |+.++.|..
T Consensus 218 ~~vtSv~ws~~G~~LavG~----~~g~v~iwD~~~~k~---~~~~~~~h~~rvg~laW~---~~~lss---Gsr~~~I~~ 284 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGT----SDGTVQIWDVKEQKK---TRTLRGSHASRVGSLAWN---SSVLSS---GSRDGKILN 284 (484)
T ss_pred CceEEEEECCCCCEEEEee----cCCeEEEEehhhccc---cccccCCcCceeEEEecc---CceEEE---ecCCCcEEE
Confidence 4566777888999999996 578999998877542 344555 99999999998 344454 689999999
Q ss_pred EecCcccCCCCCccceee-eeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059 96 WQIPELYGQLNSPQLERI-AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (346)
Q Consensus 96 w~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (346)
+|+.. .+.. ..+.+|...|..++|++|+.+ +++++.|+.+.|||.........+. .|...|..+
T Consensus 285 ~dvR~---------~~~~~~~~~~H~qeVCgLkws~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~~-----~H~aAVKA~ 349 (484)
T KOG0305|consen 285 HDVRI---------SQHVVSTLQGHRQEVCGLKWSPDGNQ-LASGGNDNVVFIWDGLSPEPKFTFT-----EHTAAVKAL 349 (484)
T ss_pred EEEec---------chhhhhhhhcccceeeeeEECCCCCe-eccCCCccceEeccCCCccccEEEe-----ccceeeeEe
Confidence 99982 2222 248899999999999999995 6666889999999996544433333 377799999
Q ss_pred EeCCCCCc-EEEEe--cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEE-ecCCCeEEEEEcccCCcceeeec
Q 019059 175 AWDPHDVN-AVAAT--CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQELP 249 (346)
Q Consensus 175 ~~~~~~~~-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~ 249 (346)
+|+|-... ||+|+ .|+.|++||..++..+..+..+. |.+|.|++..+.++.+ |..+..|.||+..+ ..++..+.
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~ 428 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVAELL 428 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceeeeec
Confidence 99996555 55554 49999999999999999888666 9999999998744444 44567899999988 44788899
Q ss_pred CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 250 ~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+|...|..++++|+| ..+++|+.|.++++|++-.
T Consensus 429 gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 429 GHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCcceeEEEEECCCC-CEEEEecccCcEEeccccC
Confidence 999999999999999 9999999999999999976
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-25 Score=171.20 Aligned_cols=218 Identities=19% Similarity=0.312 Sum_probs=182.1
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCC--ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ--RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 116 (346)
+.+..|+++++.... ....+..|.+.|+++.|.+.-. +|+++ +.||.|.+|+.. .+..+.++
T Consensus 60 ssDetI~IYDm~k~~---qlg~ll~HagsitaL~F~~~~S~shLlS~----sdDG~i~iw~~~---------~W~~~~sl 123 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRK---QLGILLSHAGSITALKFYPPLSKSHLLSG----SDDGHIIIWRVG---------SWELLKSL 123 (362)
T ss_pred CCCCcEEEEeccchh---hhcceeccccceEEEEecCCcchhheeee----cCCCcEEEEEcC---------CeEEeeee
Confidence 567889999887643 3456678999999999998765 88885 799999999998 89999999
Q ss_pred eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE
Q 019059 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD 196 (346)
Q Consensus 117 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 196 (346)
++|.+.|+.++.+|.++ +.++.+.|+.+++||+-.++......... ..+.+.|+|.|.+++.++.+ .|-+|.
T Consensus 124 K~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~------~at~v~w~~~Gd~F~v~~~~-~i~i~q 195 (362)
T KOG0294|consen 124 KAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKN------KATLVSWSPQGDHFVVSGRN-KIDIYQ 195 (362)
T ss_pred cccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCC------cceeeEEcCCCCEEEEEecc-EEEEEe
Confidence 99999999999999999 56666899999999999876544433322 34558999999988888765 589999
Q ss_pred ccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEe--CCCCCcEEEEecC
Q 019059 197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCC--NPEYDGFILSAGT 273 (346)
Q Consensus 197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~--~~~~~~~l~s~~~ 273 (346)
+.+......+..+. +.++.|...+ .+++|.+|+.|++||... ..+...+.+|+..|-.+.+ .|++ .+|+++|.
T Consensus 196 ~d~A~v~~~i~~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSS 271 (362)
T KOG0294|consen 196 LDNASVFREIENPKRILCATFLDGS--ELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASS 271 (362)
T ss_pred cccHhHhhhhhccccceeeeecCCc--eEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCc-eEEEEecc
Confidence 99888777776555 8888887655 688999999999999987 6689999999999999884 5667 89999999
Q ss_pred CCeEEEEecCC
Q 019059 274 DSTVNLWLVST 284 (346)
Q Consensus 274 d~~i~iwd~~~ 284 (346)
||.|+|||++.
T Consensus 272 DG~I~vWd~~~ 282 (362)
T KOG0294|consen 272 DGFIKVWDIDM 282 (362)
T ss_pred CceEEEEEccc
Confidence 99999999987
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=198.19 Aligned_cols=230 Identities=15% Similarity=0.205 Sum_probs=190.2
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
...+.|.+|++...........+..|...|+++.|++..+.++.+ |++||.|++||++ ..+...++.+
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliS---GSQDg~vK~~DlR---------~~~S~~t~~~ 174 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILIS---GSQDGTVKCWDLR---------SKKSKSTFRS 174 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEe---cCCCceEEEEeee---------cccccccccc
Confidence 467889999998854444446678899999999999999998887 6999999999998 4555566777
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (346)
..+.|..+.|+|...+.++++.+.|.+++||++..... ......|..+|.++.|+|+..+|++|+.|+.|+|||+.
T Consensus 175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~----~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC----EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cchhhhceeeccCCCceEEEecCCceEEEeeccCchhH----HHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 88899999999988776777788899999999964432 22345688899999999999999999999999999998
Q ss_pred CCCc--cceeeccc-eeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC
Q 019059 199 SMGK--TNSIEHAH-VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT 273 (346)
Q Consensus 199 ~~~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~ 273 (346)
+.+. ..++.... +..++|-|..++.|++++ .|-.|+|||++.+--|..++..|...++.++|.......|.+++.
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence 7654 34444344 999999999998888876 567899999998777889999999999999998755578999999
Q ss_pred CCeEEEEecCC
Q 019059 274 DSTVNLWLVST 284 (346)
Q Consensus 274 d~~i~iwd~~~ 284 (346)
|++|..-.++.
T Consensus 331 D~tv~qh~~kn 341 (839)
T KOG0269|consen 331 DGTVLQHLFKN 341 (839)
T ss_pred ccHHHHhhhhc
Confidence 99887665554
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.4e-25 Score=178.64 Aligned_cols=286 Identities=12% Similarity=0.125 Sum_probs=222.7
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v 95 (346)
.+.+.++.+.|...-++++ +.++.+.++.++...++.. ..+.--..+|.+++|.|+|...+++ +|....+..
T Consensus 213 ~~~I~sv~FHp~~plllva----G~d~~lrifqvDGk~N~~l-qS~~l~~fPi~~a~f~p~G~~~i~~---s~rrky~ys 284 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVA----GLDGTLRIFQVDGKVNPKL-QSIHLEKFPIQKAEFAPNGHSVIFT---SGRRKYLYS 284 (514)
T ss_pred cCCceEEEecCCCceEEEe----cCCCcEEEEEecCccChhh-eeeeeccCccceeeecCCCceEEEe---cccceEEEE
Confidence 3567788889888888876 5689999999998766544 3444456799999999999944444 478889999
Q ss_pred EecCcccCCCCCccceeeeeeeccC-CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059 96 WQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (346)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (346)
||+.+. ....+....++. ..+.....+++++. ++..|..|.|.+....+++....+.... .+..+
T Consensus 285 yDle~a-------k~~k~~~~~g~e~~~~e~FeVShd~~f-ia~~G~~G~I~lLhakT~eli~s~KieG------~v~~~ 350 (514)
T KOG2055|consen 285 YDLETA-------KVTKLKPPYGVEEKSMERFEVSHDSNF-IAIAGNNGHIHLLHAKTKELITSFKIEG------VVSDF 350 (514)
T ss_pred eecccc-------ccccccCCCCcccchhheeEecCCCCe-EEEcccCceEEeehhhhhhhhheeeecc------EEeeE
Confidence 999832 233444444543 45777888999994 5555779999999998877655555432 89999
Q ss_pred EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC-----Cccee
Q 019059 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML-----KAPIQ 246 (346)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~ 246 (346)
.|+.+++.|++.+.+|.|.+||++...+++.+.... -++++.++++. +||+|+..|.|.|||..+. .+|+.
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchh
Confidence 999999999999999999999999999888887443 67788889998 9999999999999996532 34777
Q ss_pred eecCCCcceEEEEeCCCCCcEEEEecC--CCeEEEEecCCCCCCCCCcccccCCcccccccccccccc---ccceeeEEE
Q 019059 247 ELPGHTHWTWAVCCNPEYDGFILSAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD---YEDSVYGLA 321 (346)
Q Consensus 247 ~~~~~~~~v~~v~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~ 321 (346)
.+..-...|+++.|+|+. ++||.+|. +..+++-.+.+ ......++. .-+.|+|++
T Consensus 430 ~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS-------------------~TVFsNfP~~n~~vg~vtc~a 489 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPS-------------------CTVFSNFPTSNTKVGHVTCMA 489 (514)
T ss_pred hhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccc-------------------eeeeccCCCCCCcccceEEEE
Confidence 787778899999999999 89888875 66899888776 222222221 223489999
Q ss_pred eCCCCCcEEEEeecCCeEEEeeec
Q 019059 322 WSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 322 ~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
|+|.+. +||.|-.+|+|.+|.|.
T Consensus 490 FSP~sG-~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 490 FSPNSG-YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCc-eEEeecCCCceeeEeec
Confidence 999987 99999999999999874
No 125
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=7.1e-26 Score=178.85 Aligned_cols=211 Identities=16% Similarity=0.297 Sum_probs=165.8
Q ss_pred eccCCceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCC-------ce----eeecccCCCceeeEEEEeCCCCCc-E
Q 019059 117 DAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKN-------AQ----VQSKQSSGMLHYLSGGAWDPHDVN-A 183 (346)
Q Consensus 117 ~~~~~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~-------~~----~~~~~~~~~~~~v~~~~~~~~~~~-l 183 (346)
..|.+.++.+.-++-++..++++ ++.|.|+||++...-.. .. -......+|...-+++.|+|-..- +
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 46788888888888876656666 78899999998632100 00 001123466677899999994333 6
Q ss_pred EEEecCCeEEEEEccCCCcc---ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC-CcceeeecCCCcceE
Q 019059 184 VAATCESSVQFWDLRSMGKT---NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KAPIQELPGHTHWTW 256 (346)
Q Consensus 184 ~~~~~d~~i~i~d~~~~~~~---~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~ 256 (346)
++|..-+.|++|...++.-. ..+. +| |..+.|+|....+|++++-||+|+|||+|.. +++....+.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 77767788999999887532 1222 35 9999999998889999999999999999974 223444578999999
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059 257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336 (346)
Q Consensus 257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (346)
.|.|+..- .+||+|+.||+++|||++.. ..++++..++-|..+|++|.|+|.....|+++|.|
T Consensus 307 VISWnr~~-~lLasG~DdGt~~iwDLR~~----------------~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 307 VISWNRRE-PLLASGGDDGTLSIWDLRQF----------------KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred eEEccCCc-ceeeecCCCceEEEEEhhhc----------------cCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 99999998 69999999999999999972 12578889999999999999999887799999999
Q ss_pred CeEEEeeec
Q 019059 337 GRVRNHMLE 345 (346)
Q Consensus 337 ~~v~vw~~~ 345 (346)
.+|.+|||.
T Consensus 370 ~QitiWDls 378 (440)
T KOG0302|consen 370 NQITIWDLS 378 (440)
T ss_pred CcEEEEEee
Confidence 999999984
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.1e-27 Score=200.74 Aligned_cols=233 Identities=18% Similarity=0.310 Sum_probs=199.0
Q ss_pred eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 139 (346)
.+..|...|.++..-...+.++. ||.|..+.+|.+. ....+..+.+|..+|.++.|+++.. ++.++
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~----Gg~~~k~~L~~i~---------kp~~i~S~~~hespIeSl~f~~~E~-Llaag 88 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVT----GGEDEKVNLWAIG---------KPNAITSLTGHESPIESLTFDTSER-LLAAG 88 (825)
T ss_pred hhhhhhhhhceeeeeccceeecc----CCCceeecccccc---------CCchhheeeccCCcceeeecCcchh-hhccc
Confidence 34568888999888555555555 6899999999988 4455667899999999999999887 57777
Q ss_pred ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEe
Q 019059 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDY 216 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~ 216 (346)
+.+|.|++||++..+... ...+|...+..+.|+|-+.+.+.++.|+.+.+||.+...+...+. +| +..+.|
T Consensus 89 sasgtiK~wDleeAk~vr-----tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~l 162 (825)
T KOG0267|consen 89 SASGTIKVWDLEEAKIVR-----TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRL 162 (825)
T ss_pred ccCCceeeeehhhhhhhh-----hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEee
Confidence 889999999999655333 334677789999999999999999999999999999888888887 46 999999
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccccc
Q 019059 217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLV 296 (346)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 296 (346)
+|+|. +++.+++|..+++||+.. +.....|..|+..+..+.|+|.. .++++|+.|+++++||+++
T Consensus 163 sP~Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dlet------------ 227 (825)
T KOG0267|consen 163 SPDGR-WVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLET------------ 227 (825)
T ss_pred cCCCc-eeeccCCcceeeeecccc-cccccccccccccccccccCchh-hhhccCCCCceeeeeccce------------
Confidence 99998 899999999999999987 66888999999999999999998 9999999999999999998
Q ss_pred CCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059 297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335 (346)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (346)
.+.+.........|.+.+|+|++. .+.+|..
T Consensus 228 -------fe~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q 258 (825)
T KOG0267|consen 228 -------FEVISSGKPETDGVRSLAFNPDGK-IVLSGEQ 258 (825)
T ss_pred -------eEEeeccCCccCCceeeeecCCce-eeecCch
Confidence 677777777777899999999996 6666544
No 127
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=2.9e-24 Score=185.53 Aligned_cols=293 Identities=17% Similarity=0.280 Sum_probs=226.9
Q ss_pred ceeeecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEE
Q 019059 6 SGIGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTV 84 (346)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~ 84 (346)
+..+|..+..-..|+++...|--..+++|. .+|+|.++++..++-. .. +.|. ++|+.++|.-||..++++
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~----~~G~ViifNlK~dkil---~s-Fk~d~g~VtslSFrtDG~p~las- 262 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGL----ENGTVIIFNLKFDKIL---MS-FKQDWGRVTSLSFRTDGNPLLAS- 262 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEec----cCceEEEEEcccCcEE---EE-EEccccceeEEEeccCCCeeEEe-
Confidence 466777776666788888888888888885 6789999998876422 22 3354 999999999999999887
Q ss_pred eecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCc------
Q 019059 85 FSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNA------ 157 (346)
Q Consensus 85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~------ 157 (346)
++..|.+.+||++ ..+....+ ..|.+.|....|.|... ++++++.|+.+++|=.+++.-..
T Consensus 263 --~~~~G~m~~wDLe---------~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R 330 (910)
T KOG1539|consen 263 --GRSNGDMAFWDLE---------KKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSR 330 (910)
T ss_pred --ccCCceEEEEEcC---------CCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeec
Confidence 4777999999998 33333333 47878888888888766 45555777777777544210000
Q ss_pred --------------------------------------------e-----------------------------------
Q 019059 158 --------------------------------------------Q----------------------------------- 158 (346)
Q Consensus 158 --------------------------------------------~----------------------------------- 158 (346)
.
T Consensus 331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence 0
Q ss_pred ----------------------------e------------------------------------------ee---cccC
Q 019059 159 ----------------------------V------------------------------------------QS---KQSS 165 (346)
Q Consensus 159 ----------------------------~------------------------------------------~~---~~~~ 165 (346)
+ .. ...+
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 0 00 0013
Q ss_pred CCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059 166 GMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (346)
Q Consensus 166 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (346)
.|..+|++++...-++.+++++.+|.+.+||.........+..++ +.++..+.... +++.+.+|-.|+++|..+ .+.
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t-~kv 568 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVT-RKV 568 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchh-hhh
Confidence 456677777776666778888888889999998888777777677 88999998887 899999999999999997 668
Q ss_pred eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (346)
Q Consensus 245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (346)
++.|.+|.+.|+.++|||+| ++|++++.|++|++||+.+ +.++-.+. -..+.+++.|+|
T Consensus 569 vR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt-------------------~~lID~~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPT-------------------GTLIDGLL-VDSPCTSLSFSP 627 (910)
T ss_pred hHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccC-------------------cceeeeEe-cCCcceeeEECC
Confidence 99999999999999999999 9999999999999999998 77766553 356789999999
Q ss_pred CCCcEEEEeecC-CeEEEee
Q 019059 325 REPWIFASLSYD-GRVRNHM 343 (346)
Q Consensus 325 ~~~~~l~s~~~d-~~v~vw~ 343 (346)
+|. +||+...| .-|++|.
T Consensus 628 ngD-~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 628 NGD-FLATVHVDQNGIYLWS 646 (910)
T ss_pred CCC-EEEEEEecCceEEEEE
Confidence 998 89999888 6699995
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.6e-27 Score=200.35 Aligned_cols=213 Identities=21% Similarity=0.398 Sum_probs=186.1
Q ss_pred CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (346)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 167 (346)
..+..+++|+.. .+..|...+.++..-..++ .++.+++|..+-+|.+........ ..+|
T Consensus 11 ~~~t~Lr~~~~~---------------~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-----~~~h 69 (825)
T KOG0267|consen 11 KRATKLRVWDTR---------------EFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-----LTGH 69 (825)
T ss_pred eeeeccccccch---------------hhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-----eecc
Confidence 355577788865 2346888888888755555 477778888999999876544333 3568
Q ss_pred ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (346)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (346)
..+|.++.|++....|++|+.+|+|++||+...+.++++. +| +.++.|+|.+. +++.|+.|+.+++||++. ..+
T Consensus 70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk-~Gc 146 (825)
T KOG0267|consen 70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK-KGC 146 (825)
T ss_pred CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeeccceE-Eeccccccccceehhhhc-cCc
Confidence 8899999999999999999999999999999999999887 66 99999999998 789999999999999997 448
Q ss_pred eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (346)
Q Consensus 245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (346)
.+.+.+|...+..++|+|+| ++++++++|.+++|||... ++.+..|..|...+.++.|+|
T Consensus 147 ~~~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~a-------------------gk~~~ef~~~e~~v~sle~hp 206 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTA-------------------GKLSKEFKSHEGKVQSLEFHP 206 (825)
T ss_pred eeeecCCcceeEEEeecCCC-ceeeccCCcceeeeecccc-------------------cccccccccccccccccccCc
Confidence 99999999999999999999 9999999999999999998 999999999999999999999
Q ss_pred CCCcEEEEeecCCeEEEeeec
Q 019059 325 REPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 325 ~~~~~l~s~~~d~~v~vw~~~ 345 (346)
..- ++++||.|++|++||++
T Consensus 207 ~e~-Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 207 LEV-LLAPGSSDRTVRFWDLE 226 (825)
T ss_pred hhh-hhccCCCCceeeeeccc
Confidence 884 99999999999999997
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=8.9e-26 Score=184.68 Aligned_cols=245 Identities=14% Similarity=0.215 Sum_probs=199.2
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec--cCCceEEEEeecCCCCcE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA--HVGKINCVLWWSSGRHDK 136 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~ 136 (346)
.....|..-|.++..|...+++.++ ..|-|+|||+.... ...++..+.. ...-|.++...|||+. +
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTg-----GkgcVKVWdis~pg------~k~PvsqLdcl~rdnyiRSckL~pdgrt-L 480 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTG-----GKGCVKVWDISQPG------NKSPVSQLDCLNRDNYIRSCKLLPDGRT-L 480 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEec-----CCCeEEEeeccCCC------CCCccccccccCcccceeeeEecCCCce-E
Confidence 3456788999999999988888873 56789999998432 2233333332 3567899999999996 8
Q ss_pred EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeE
Q 019059 137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN 213 (346)
Q Consensus 137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~ 213 (346)
+++++-.++.|||+.......+..... .--.++.++.+||.+..++++.||.|.|||+.+...++.++ +| +.|
T Consensus 481 ivGGeastlsiWDLAapTprikaelts---sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGasc 556 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPRIKAELTS---SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASC 556 (705)
T ss_pred EeccccceeeeeeccCCCcchhhhcCC---cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCcee
Confidence 888888999999998765443333222 11267889999999999999999999999999999999998 77 999
Q ss_pred EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059 214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE 293 (346)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 293 (346)
|..+++|. .|-+|+-|.+||.||+|... .+.... ....|.++..+|++ .+|+.|-+++.+.|.....
T Consensus 557 Idis~dGt-klWTGGlDntvRcWDlregr-qlqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~sk--------- 623 (705)
T KOG0639|consen 557 IDISKDGT-KLWTGGLDNTVRCWDLREGR-QLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSK--------- 623 (705)
T ss_pred EEecCCCc-eeecCCCccceeehhhhhhh-hhhhhh-hhhhheecccCCCc-cceeeecccCcEEEEecCC---------
Confidence 99999998 89999999999999999844 333322 35789999999999 9999999999999888874
Q ss_pred cccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
.....+..|.+-|.++.|.+.|+ .+++.+.|..+..|..
T Consensus 624 -----------p~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 624 -----------PEKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRT 662 (705)
T ss_pred -----------ccceeecccccEEEEEEecccCc-eeeecCchhhhhhccC
Confidence 56677788999999999999998 7899999999998864
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.5e-25 Score=170.56 Aligned_cols=224 Identities=18% Similarity=0.281 Sum_probs=175.2
Q ss_pred eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC--C--------ceeeecccCCCceeeEEEEeCCCCCcEEEE
Q 019059 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--N--------AQVQSKQSSGMLHYLSGGAWDPHDVNAVAA 186 (346)
Q Consensus 117 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~--~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 186 (346)
+.|.+.|+++...+...+.+++++.||.|.+||++.... . ..+......+|...|..+.|-|-+.-+++.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 468899999999887666688888999999999985431 1 111223356788899999999976665555
Q ss_pred -ecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCC--cEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059 187 -TCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKK--HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP 262 (346)
Q Consensus 187 -~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 262 (346)
+-|.++++||..+.+....+..+. |.+-+++|-.. -++++|..+-.|++.|+.. +..-+.+.+|...|.+|.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEEEEecc
Confidence 569999999999999888888666 88888888542 3788888999999999998 668899999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059 263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 263 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw 342 (346)
..+..|++|+.||.|++||++...+-........ ....+.+++-..|.+.|.+++|..++. .+++++.|..+++|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn----~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN----TKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRVW 273 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeeccc----CccCccccccccccceeeeeeecccch-hhhhccCccceEEe
Confidence 9988899999999999999997422110000000 011233344567899999999999997 89999999999999
Q ss_pred eecC
Q 019059 343 MLEK 346 (346)
Q Consensus 343 ~~~~ 346 (346)
+.++
T Consensus 274 n~~~ 277 (397)
T KOG4283|consen 274 NMES 277 (397)
T ss_pred eccc
Confidence 9764
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.2e-24 Score=175.90 Aligned_cols=259 Identities=14% Similarity=0.188 Sum_probs=193.2
Q ss_pred eeeeccccceEEeeecCCCC-ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 137 (346)
....-+.+.|++++|+|... .++++ |+..|.|-+||+... .+...-+..+..|..+|.++.|+|.+...++
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~---GdK~G~VG~Wn~~~~-----~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAV---GDKGGQVGLWNFGTQ-----EKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEE---ccCCCcEEEEecCCC-----CCccCceEEeccCCccccceEecCCChhhee
Confidence 33445789999999999877 67776 688899999999521 1133455567789999999999999888799
Q ss_pred EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEE
Q 019059 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNV 214 (346)
Q Consensus 138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~ 214 (346)
+++.||+|++-|+++......+... .....+.++.|+.+...++++..=|...+||++++........-| |+++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~---~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLD---TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcC---ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 9999999999999865422222111 123367888999988889988877799999999877533222233 9999
Q ss_pred EeCCCCCcEEEEecCCCeEEEEEcccCCc---ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059 215 DYDTKKKHLLVTAADESGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP 291 (346)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 291 (346)
+++|..++++++++.|++++|||+|+... |+.....|...|.+..|||.+ -.|++.+.|..|+|||..-....
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~--- 404 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAK--- 404 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-CceEeeccCCceEEeeccccccc---
Confidence 99999999999999999999999997532 233445699999999999999 55999999999999999521000
Q ss_pred cccccCCcccccccccccccc---ccc--eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 292 SESLVESPNQRANSLLNSYSD---YED--SVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.++..++.. +.. .....+|.|+.. +++.|-.-..|-|+|-+
T Consensus 405 ------------~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 405 ------------DEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGN 450 (498)
T ss_pred ------------CCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCC
Confidence 233332221 111 234578999886 88888888888888754
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=9.5e-25 Score=184.95 Aligned_cols=240 Identities=16% Similarity=0.250 Sum_probs=195.7
Q ss_pred EEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEE-EEeecCCCCc
Q 019059 57 ICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINC-VLWWSSGRHD 135 (346)
Q Consensus 57 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~ 135 (346)
....+.+|...|..+++.+.. .+++ ++.|+++++|+-. .........+.+|.+-|.. ++|.+..+..
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s----~sRd~t~~vw~~~-------~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIIS----GSRDGTVKVWAKK-------GKQYLETHAFEGPKGFIANSICYAESDKGR 73 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEee----cCCCCceeeeecc-------CcccccceecccCcceeeccceeccccCcc
Confidence 346778999999999877643 4555 4789999999964 1234444567778887777 8888755555
Q ss_pred EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---ee
Q 019059 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR 212 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~ 212 (346)
++.++.|..|.+|...+...... ..+|...|.++....++. +++++.|.++++|-... +...+. +| |.
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~~-----LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~-gH~asVW 144 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLYT-----LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQ-GHTASVW 144 (745)
T ss_pred eEeecccceEEEEecCCCCchhh-----hhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccC-Ccchhee
Confidence 88889999999999986654333 346888999999877666 99999999999997643 444454 67 99
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS 292 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 292 (346)
+++.-|++ .+++|+.|++|++|.- +..+++|.+|...|+.+++-+++ .|++++.||.|++|++.
T Consensus 145 Av~~l~e~--~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~--------- 208 (745)
T KOG0301|consen 145 AVASLPEN--TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD--------- 208 (745)
T ss_pred eeeecCCC--cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCC--CeEeecCCceEEEEecc---------
Confidence 99999988 5899999999999985 44789999999999999999874 58999999999999995
Q ss_pred ccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++++.++.+|+.-|.+++..++++ +++++++|++++||+.+
T Consensus 209 -----------ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 209 -----------GEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -----------CceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 699999999999999999776665 89999999999999853
No 133
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=2.9e-24 Score=166.71 Aligned_cols=253 Identities=14% Similarity=0.170 Sum_probs=187.4
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCC--Ccc-ceeeeeee-ccCCceEEEEee-------cCCCCc
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLN--SPQ-LERIAALD-AHVGKINCVLWW-------SSGRHD 135 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~-~~~~~~~~-~~~~~i~~~~~~-------~~~~~~ 135 (346)
-...+.|+|||..+++. +.|..+++|+++...-... .+. .+....++ .....|...+|- |+.. +
T Consensus 51 f~kgckWSPDGSciL~~----sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l 125 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSL----SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-L 125 (406)
T ss_pred hhccceeCCCCceEEee----cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-e
Confidence 44578999999999996 6899999999974322111 111 11111121 234567777775 4444 5
Q ss_pred EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc-cCCCcc---ceeec---
Q 019059 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL-RSMGKT---NSIEH--- 208 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~---~~~~~--- 208 (346)
+++++.+.-|.+||.-+++....+..-.+........+++|+|||..|++|- ...|+++|+ |.|... .++..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccc
Confidence 7777889999999999887666555444333334568899999999988874 678999999 555422 12222
Q ss_pred cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCC
Q 019059 209 AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVST 284 (346)
Q Consensus 209 ~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~ 284 (346)
+. +.+++|+|.....+++|+...++-|+.-.. ..|+..+.+|.+.|+.++|.++| +.|++|+. |..|..||++.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehh
Confidence 11 999999999887899999888888887665 56899999999999999999999 78888776 67899999997
Q ss_pred CCCCCCCcccccCCccccccccccccccccc---eeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 285 SNHDELPSESLVESPNQRANSLLNSYSDYED---SVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
...++..+..|.. .-.-+...|.++ +|++|+.||.|++||+.+
T Consensus 283 ------------------~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 283 ------------------SRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ------------------ccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence 4677777777755 222356678887 999999999999999864
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.5e-24 Score=160.76 Aligned_cols=245 Identities=17% Similarity=0.279 Sum_probs=188.0
Q ss_pred cCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeec-CCCCceEEEEeecCCcceEEEEecCcc
Q 019059 23 KADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSC-PFDQRIFSTVFSTGESYGAAIWQIPEL 101 (346)
Q Consensus 23 ~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~~~~~d~~i~vw~~~~~ 101 (346)
..+=.+.|++.. +.++.|.++.+.+.+.......+.+|.++|+.++|. |.-..+++. ++.|+.|.||.-+
T Consensus 18 ~lDyygkrlATc----sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS---csYDgkVIiWke~-- 88 (299)
T KOG1332|consen 18 QLDYYGKRLATC----SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILAS---CSYDGKVIIWKEE-- 88 (299)
T ss_pred hhhhhcceeeee----cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeE---eecCceEEEEecC--
Confidence 344456777764 478999999999887756678999999999999995 544444444 3799999999976
Q ss_pred cCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC-
Q 019059 102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH- 179 (346)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 179 (346)
++..........|...|++++|.|.+-.+++++ +.||.|.|.+.+..... ........|.-.|++++|.|.
T Consensus 89 -----~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w--~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 89 -----NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW--TTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred -----CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc--cchhhhhccccccceeeecCcC
Confidence 345666777889999999999999987777766 77999999999865211 112223457778999999986
Q ss_pred --C-----------CcEEEEecCCeEEEEEccCCCccc-eeeccc---eeEEEeCCCCC---cEEEEecCCCeEEEEEcc
Q 019059 180 --D-----------VNAVAATCESSVQFWDLRSMGKTN-SIEHAH---VRNVDYDTKKK---HLLVTAADESGIHLWDLR 239 (346)
Q Consensus 180 --~-----------~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~---v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~ 239 (346)
| +.|++++.|..|+||+...++-.. ....+| |+.++|.|.-. ..+++++.||++.||-.+
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 3 459999999999999999875322 112366 99999999752 369999999999999877
Q ss_pred cCCc--ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 240 MLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 240 ~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.... ....++.....+..+.||+.| +.|+.++.|+.|.+|.-+.
T Consensus 242 ~e~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CccCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeCC
Confidence 4322 223344456789999999999 9999999999999997664
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.9e-24 Score=185.55 Aligned_cols=240 Identities=16% Similarity=0.261 Sum_probs=193.3
Q ss_pred eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec
Q 019059 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID 141 (346)
Q Consensus 62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 141 (346)
+.|...-+.++|.|+|.+|+++ |.|+.|++|+... ..+...++..+...|.+++-... + +++++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tc----gsdg~ir~~~~~s--------d~e~P~ti~~~g~~v~~ia~~s~--~-f~~~s~ 74 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTC----GSDGDIRKWKTNS--------DEEEPETIDISGELVSSIACYSN--H-FLTGSE 74 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEe----cCCCceEEeecCC--------cccCCchhhccCceeEEEeeccc--c-eEEeec
Confidence 4788899999999999977775 8999999999762 11223344347777888776543 3 888889
Q ss_pred CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCC
Q 019059 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDT 218 (346)
Q Consensus 142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~ 218 (346)
++.|.+|.+..++....+... .-++..++++.+|.++++|+.|-.|++.++........+. +| |.++.|+|
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rf-----tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p 148 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARF-----TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDP 148 (933)
T ss_pred cceEEEeeCCCCCccceeeee-----eccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcC
Confidence 999999999877654333332 2388999999999999999999999999999888877776 55 99999999
Q ss_pred CCCcEEEEecCCCeEEEEEcccCCcceeeecC--------CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELPG--------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL 290 (346)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 290 (346)
++. +|++.+-||.|++||+.. +....++.+ ....+..++|+|++ ..|+..+.|+.|++|+...
T Consensus 149 ~~~-fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~------ 219 (933)
T KOG1274|consen 149 KGN-FLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKG------ 219 (933)
T ss_pred CCC-EEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCC------
Confidence 998 999999999999999986 434444332 13456789999998 7778888899999999998
Q ss_pred CcccccCCcccccccccccccc--ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 291 PSESLVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++..+.+.. +...+.++.|+|.|. +||+++.||.|.|||++
T Consensus 220 -------------we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 220 -------------WELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVD 262 (933)
T ss_pred -------------ceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecc
Confidence 777776654 444599999999997 99999999999999987
No 136
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.2e-24 Score=179.94 Aligned_cols=258 Identities=16% Similarity=0.175 Sum_probs=188.0
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
..+.+|.+.|.+|...|.|..|++ |+.||+|+||.+. ++.+++++ ...+.|.|++|+|.+..-+++
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlas----GsdDGtvriWEi~---------TgRcvr~~-~~d~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLAS----GSDDGTVRIWEIA---------TGRCVRTV-QFDSEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeee----cCCCCcEEEEEee---------cceEEEEE-eecceeEEEEecCCCCceeEE
Confidence 557799999999999999988888 5899999999999 88998888 456799999999998866666
Q ss_pred EecCCeEEEEEcCCCCCCce---------e-----------ee------------cccCCCceeeEEEEeCCCCCcEEEE
Q 019059 139 SIDEENIFLWSLDCSNKNAQ---------V-----------QS------------KQSSGMLHYLSGGAWDPHDVNAVAA 186 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~---------~-----------~~------------~~~~~~~~~v~~~~~~~~~~~l~~~ 186 (346)
.+....+.+.+..-+..... . .. ...-.|...|..+.|+..|.+|++.
T Consensus 460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence 65555565555332210000 0 00 0001234466777777777777766
Q ss_pred ecC---Ce-----------------------------------------EEEEEccCCCccceeeccc--eeEEEeCCCC
Q 019059 187 TCE---SS-----------------------------------------VQFWDLRSMGKTNSIEHAH--VRNVDYDTKK 220 (346)
Q Consensus 187 ~~d---~~-----------------------------------------i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~ 220 (346)
..+ .. |++||+.....++.+..+. |..++.+|.|
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 542 23 4455554444444443333 8899999999
Q ss_pred CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300 (346)
Q Consensus 221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (346)
. -|+.|+.|+.+..||+.-..++.+++..|...+++|+|++.- .+|++|+.||++.|+.-.-.+.-. +
T Consensus 620 D-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~----------q 687 (733)
T KOG0650|consen 620 D-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLL----------Q 687 (733)
T ss_pred C-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhh----------c
Confidence 8 677889999999999998778999999999999999999999 999999999999998543210000 0
Q ss_pred ccccccccccccccce----eeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 301 QRANSLLNSYSDYEDS----VYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 301 ~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
.+.--++..+.+|... |.+..|+|..+ .|++++.||+|++|.
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLFT 733 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceEEeeC
Confidence 0113456778888765 88999999998 677888899999983
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=170.49 Aligned_cols=278 Identities=15% Similarity=0.205 Sum_probs=198.1
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
.+...+.+|++......+..+.-. ...-.++..- .+.+++++. -.-..+.+|.+.. .........
T Consensus 15 ~d~~~~~~~dl~TGt~~~~ykg~~--~a~~~sl~~l-~~~yllsaq---~~rp~l~vw~i~k---------~~~~~q~~v 79 (476)
T KOG0646|consen 15 FDPINCIVWDLRTGTSLLQYKGSY--LAQAASLTAL-NNEYLLSAQ---LKRPLLHVWEILK---------KDQVVQYIV 79 (476)
T ss_pred CCCcceeEEecCCCceeEEecCcc--cccchhhhhh-chhheeeec---ccCccccccccCc---------hhhhhhhcc
Confidence 344557788887765544433221 1111112211 236777763 4455899999872 222222334
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (346)
-.++|.++.-+|+|.+ +++++..+.|++|.+.++...... .+|=..|+++.|+-|+.++++++.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~-l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYF-LLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred cccceeeeecCCCceE-EEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 5678999999999984 555558999999999988755444 2355689999999999999999999999999874
Q ss_pred C---------CCccceeeccc---eeEEEeCCCCC-cEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCC
Q 019059 199 S---------MGKTNSIEHAH---VRNVDYDTKKK-HLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD 265 (346)
Q Consensus 199 ~---------~~~~~~~~~~~---v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 265 (346)
. .++...+. .| |+++...+.+. ..+++++.|.++++||+.. ...+.++. ....+.+++.+|-.
T Consensus 154 ~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti~-fp~si~av~lDpae- 229 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GVLLLTIT-FPSSIKAVALDPAE- 229 (476)
T ss_pred eecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ceeeEEEe-cCCcceeEEEcccc-
Confidence 2 22334443 56 88888876532 2799999999999999987 54555554 57889999999999
Q ss_pred cEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc--eeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 266 GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 266 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
+.++.|+.+|.|.+.++.....+......... ...+..+..+.+|.. .|+|++.+-||. +|++|+.||.|+|||
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~---~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR---HEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWD 305 (476)
T ss_pred cEEEecCCcceEEeeehhcCCccccccccccc---ccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEe
Confidence 99999999999999988874432211100000 012455667788887 999999999997 999999999999999
Q ss_pred ec
Q 019059 344 LE 345 (346)
Q Consensus 344 ~~ 345 (346)
+.
T Consensus 306 i~ 307 (476)
T KOG0646|consen 306 IY 307 (476)
T ss_pred cc
Confidence 85
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.1e-23 Score=174.13 Aligned_cols=282 Identities=14% Similarity=0.184 Sum_probs=221.1
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEEeecCCcceEE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAA 94 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~~~~~d~~i~ 94 (346)
.+.|.++..+....+++++. .++.|-+|++.. .......+.+++ ..|.+++|++ +.+|++. +-+|.|.
T Consensus 25 Ps~I~slA~s~kS~~lAvsR----t~g~IEiwN~~~--~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~----g~sg~i~ 93 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSR----TDGNIEIWNLSN--NWFLEPVIHGPEDRSIESLAWAE-GGRLFSS----GLSGSIT 93 (691)
T ss_pred ccceEEEEEeccCCceeeec----cCCcEEEEccCC--CceeeEEEecCCCCceeeEEEcc-CCeEEee----cCCceEE
Confidence 34566677777777787774 568899998877 455566777766 6899999995 6678885 6899999
Q ss_pred EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059 95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (346)
Q Consensus 95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (346)
-||+- +++++..+....+.|++++.+|.++. ++.+++||.+..++...+....... .......+.++
T Consensus 94 EwDl~---------~lk~~~~~d~~gg~IWsiai~p~~~~-l~IgcddGvl~~~s~~p~~I~~~r~---l~rq~sRvLsl 160 (691)
T KOG2048|consen 94 EWDLH---------TLKQKYNIDSNGGAIWSIAINPENTI-LAIGCDDGVLYDFSIGPDKITYKRS---LMRQKSRVLSL 160 (691)
T ss_pred EEecc---------cCceeEEecCCCcceeEEEeCCccce-EEeecCCceEEEEecCCceEEEEee---cccccceEEEE
Confidence 99998 78888889888999999999999984 7778899977777776543222222 22234589999
Q ss_pred EeCCCCCcEEEEecCCeEEEEEccCCCccceee-------c-cc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-------H-AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (346)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~-~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (346)
+|+|++..++.|+.||.|++||...+..+.... . .. |.++.|-.++ .+++|..-|+|.+||... ...
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~-gTL 237 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIF-GTL 237 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccC-cch
Confidence 999999999999999999999999988665221 1 11 8888888776 699999999999999987 668
Q ss_pred eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (346)
Q Consensus 245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (346)
++.+..|...|.+++..+++ ..+++++.|+.|--|...+... ..........|...|.+++..+
T Consensus 238 iqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~---------------~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKS---------------EWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred hhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCcc---------------ceeeeccccCCcccceeeeeec
Confidence 88999999999999999998 8999999999998888776111 0223333456777799999987
Q ss_pred CCCcEEEEeecCCeEEEee
Q 019059 325 REPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 325 ~~~~~l~s~~~d~~v~vw~ 343 (346)
+ .+++|+.|..+.+-.
T Consensus 302 ~---~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 302 N---ALISGGRDFTLAICS 317 (691)
T ss_pred c---eEEecceeeEEEEcc
Confidence 5 688999999887643
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.2e-22 Score=166.46 Aligned_cols=260 Identities=13% Similarity=0.139 Sum_probs=195.3
Q ss_pred CCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059 41 ENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (346)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 119 (346)
.+.++.|......-......+..+. .-|.|++|.+++. +++ |.++|.|.||+.. ..+..+....|
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viT----gDS~G~i~Iw~~~---------~~~~~k~~~aH 286 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VIT----GDSGGNILIWSKG---------TNRISKQVHAH 286 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEe----ecCCceEEEEeCC---------CceEEeEeeec
Confidence 3566777554433222222233332 6799999999875 444 4789999999987 55566666699
Q ss_pred CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee------------------------------------cc
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS------------------------------------KQ 163 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~------------------------------------~~ 163 (346)
.+.|.+++...+|. +++++.|..|..||-+ -+....+.. ..
T Consensus 287 ~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 287 DGGVFSLCMLRDGT--LLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred CCceEEEEEecCcc--EeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 99999999999998 7888999999999932 111111000 01
Q ss_pred cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059 164 SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242 (346)
Q Consensus 164 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 242 (346)
..+|......++.+|+.+.+++++.|+.+++|+ ..+...+...+. +.|+.|+|.| .++.|...|...+.|.++ .
T Consensus 364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~ 438 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTET-Q 438 (626)
T ss_pred EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEeccc-c
Confidence 235666788899999999999999999999999 444444444344 9999999999 689999999999999987 5
Q ss_pred cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc-cccceeeEEE
Q 019059 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS-DYEDSVYGLA 321 (346)
Q Consensus 243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 321 (346)
..+..... ..++++++|+|+| .+||.|+.|+.|+||-+.. .+....... .+.++|+.++
T Consensus 439 ~lv~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~------------------~g~~y~r~~k~~gs~ithLD 498 (626)
T KOG2106|consen 439 DLVTIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSA------------------NGRKYSRVGKCSGSPITHLD 498 (626)
T ss_pred eeEEEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECC------------------CCcEEEEeeeecCceeEEee
Confidence 44544444 8899999999999 9999999999999999886 233333322 2347899999
Q ss_pred eCCCCCcEEEEeecCCeEEEee
Q 019059 322 WSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 322 ~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
|++|++ ++.+.+.|-.|..|.
T Consensus 499 wS~Ds~-~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 499 WSSDSQ-FLVSNSGDYEILYWK 519 (626)
T ss_pred ecCCCc-eEEeccCceEEEEEc
Confidence 999998 899999999999994
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-23 Score=163.15 Aligned_cols=279 Identities=14% Similarity=0.245 Sum_probs=214.3
Q ss_pred eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecC
Q 019059 20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP 99 (346)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~ 99 (346)
..+.+++.+.-+++|. .+|.+.+|++..-+ ..+.+.+|-.+|.+++||++|+.|+++ +.|..+.+||+.
T Consensus 27 ~~~~Fs~~G~~lAvGc----~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~Llts----S~D~si~lwDl~ 95 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGC----ANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTS----SRDWSIKLWDLL 95 (405)
T ss_pred ceEEeccCcceeeeec----cCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeee----cCCceeEEEecc
Confidence 3466788888899885 57999999998754 446778999999999999999999996 799999999998
Q ss_pred cccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC-ceeeEEEEeCC
Q 019059 100 ELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM-LHYLSGGAWDP 178 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~ 178 (346)
.+.+++.+ ...++|..+.|+|.....++++-.+..-.+-++..+ ...+......+. .....+..|.+
T Consensus 96 ---------~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 96 ---------KGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred ---------CCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccC
Confidence 66788777 467899999999998887888755555666666542 223333222221 11233446899
Q ss_pred CCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc--------ceee
Q 019059 179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA--------PIQE 247 (346)
Q Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~ 247 (346)
.|+++++|...|.+.++|..+.+++..++... |..+.++..|+ .|+.-+.|..||.|+++.... +.+.
T Consensus 164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K 242 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK 242 (405)
T ss_pred CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHH
Confidence 99999999999999999999999887776332 99999999998 888999999999999873211 1122
Q ss_pred ecC--CCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc-ceeeEEEeC
Q 019059 248 LPG--HTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWS 323 (346)
Q Consensus 248 ~~~--~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 323 (346)
++. ....-.+++|+.+| .|++.++. -..++||.... +.+++.+.|.. ....++.|+
T Consensus 243 ~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~-------------------GsLVKILhG~kgE~l~DV~wh 302 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSI-------------------GSLVKILHGTKGEELLDVNWH 302 (405)
T ss_pred HHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCC-------------------cceeeeecCCchhheeecccc
Confidence 211 12234678899999 77766664 45899999998 99999998877 567899999
Q ss_pred CCCCcEEEEeecCCeEEEeee
Q 019059 324 SREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 324 ~~~~~~l~s~~~d~~v~vw~~ 344 (346)
|-.+ .+++. ..|.|++|..
T Consensus 303 p~rp-~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 303 PVRP-IIASI-ASGVVYIWAV 321 (405)
T ss_pred ccee-eeeec-cCCceEEEEe
Confidence 9876 67776 6899999975
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=170.70 Aligned_cols=248 Identities=10% Similarity=0.147 Sum_probs=195.2
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI 145 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i 145 (346)
+.|+++.|+|..+.++++ |.|+++++|.++ ......++.+.-...+|.+.+|.|+|...+++++.....
T Consensus 214 ~~I~sv~FHp~~plllva----G~d~~lrifqvD-------Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVA----GLDGTLRIFQVD-------GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred CCceEEEecCCCceEEEe----cCCCcEEEEEec-------CccChhheeeeeccCccceeeecCCCceEEEecccceEE
Confidence 789999999988888875 899999999998 223345666666688999999999999668888888999
Q ss_pred EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEE
Q 019059 146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLL 224 (346)
Q Consensus 146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l 224 (346)
+.||+.+.+.. ++..... -....+.....+|++++|+..+..|.|.+....+++.+..+.... +..+.|+.++. .|
T Consensus 283 ysyDle~ak~~-k~~~~~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk-~l 359 (514)
T KOG2055|consen 283 YSYDLETAKVT-KLKPPYG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK-EL 359 (514)
T ss_pred EEeeccccccc-cccCCCC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCc-EE
Confidence 99999876532 2222111 113367778899999999999999999999999999999888655 99999999998 66
Q ss_pred EEecCCCeEEEEEcccCCcceeeecCCCcce--EEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWT--WAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR 302 (346)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (346)
++.+.+|.|.+||++. ..+++.+.. .+.| ++++.++++ .+||+|+..|.|.|||.++-.. ..
T Consensus 360 ~~~~~~GeV~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-------------s~ 423 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA-------------ST 423 (514)
T ss_pred EEEcCCceEEEEecCC-cceEEEEee-cCccceeeeeecCCC-ceEEeccCcceEEEeccchhhc-------------cC
Confidence 6777789999999998 457777763 3333 567788999 8999999999999999775111 11
Q ss_pred ccccccccccccceeeEEEeCCCCCcEEEEeec--CCeEEEeee
Q 019059 303 ANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY--DGRVRNHML 344 (346)
Q Consensus 303 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~v~vw~~ 344 (346)
..++++.+..-...|+++.|+|+.+ +||.+|. +..+|+-.+
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHV 466 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEec
Confidence 3577788877778899999999998 8777763 556666544
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=6.1e-24 Score=173.77 Aligned_cols=268 Identities=14% Similarity=0.211 Sum_probs=201.0
Q ss_pred CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC
Q 019059 41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120 (346)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 120 (346)
...+.+|+++.....-........ -.+.++.|+.... |+++. .+.|..+++|.-... .++...+....+.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w~~~n~-lvvas--~~gdk~~~~~~K~g~-----~~~Vp~~~k~~gd- 80 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAE-PGDFSFNWQRRNF-LVVAS--MAGDKVMRIKEKDGK-----TPEVPRVRKLTGD- 80 (673)
T ss_pred CCceEEeecccccCccccccCCCC-Ccceeeeccccce-EEEee--cCCceeEEEecccCC-----CCccceeeccccc-
Confidence 346888998876443222211111 3489999987554 44432 577889999986521 1122233333222
Q ss_pred CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC
Q 019059 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200 (346)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (346)
.-.|++......+ +++++..+.|+|||++.. +.-....+|...|+++.++-.+.+|++++..|.|.|..+.++
T Consensus 81 -~~~Cv~~~s~S~y-~~sgG~~~~Vkiwdl~~k-----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 81 -NAFCVACASQSLY-EISGGQSGCVKIWDLRAK-----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred -hHHHHhhhhccee-eeccCcCceeeehhhHHH-----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence 3344444444454 667788999999999832 223334568889999999999999999999999999999999
Q ss_pred Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059 201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV 277 (346)
Q Consensus 201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i 277 (346)
.....+..+. ++-+.|+|..+++|.+++.+|.|.+||+........-...|..+...|+|+|..+.+|++.+.|..|
T Consensus 154 ~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki 233 (673)
T KOG4378|consen 154 QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI 233 (673)
T ss_pred ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceE
Confidence 8888777554 8899999999989999999999999999874444445568999999999999998999999999999
Q ss_pred EEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
.+||.+. ......+. ...+...++|+++|- +|+.|...|.|..||+.+
T Consensus 234 ~~yD~~s-------------------~~s~~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 234 NIYDIRS-------------------QASTDRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRS 281 (673)
T ss_pred EEeeccc-------------------ccccceee-ecCCcceeeecCCce-EEEeecCCceEEEEeccc
Confidence 9999997 44444443 355689999999996 999999999999999863
No 143
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=171.91 Aligned_cols=239 Identities=17% Similarity=0.214 Sum_probs=190.9
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-CCceEEEEeecCCCCcEEEEecC
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKLVSIDE 142 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~d 142 (346)
.+.+|.+++|+.+.+.|+++ -.+|.|.+|++.. ..-....+.++ +..|.+++|++.++ +++.+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvs----Rt~g~IEiwN~~~--------~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~s 89 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVS----RTDGNIEIWNLSN--------NWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLS 89 (691)
T ss_pred eccceEEEEEeccCCceeee----ccCCcEEEEccCC--------CceeeEEEecCCCCceeeEEEccCCe--EEeecCC
Confidence 45789999999999998885 5899999999983 34444556555 66899999998777 7888889
Q ss_pred CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee--ecc--ceeEEEeCC
Q 019059 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI--EHA--HVRNVDYDT 218 (346)
Q Consensus 143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~--~v~~~~~~~ 218 (346)
|.|.-||+.+.++....... -..+.+++.+|.+..++.++.||.+..++...++..... ... .+.+++|+|
T Consensus 90 g~i~EwDl~~lk~~~~~d~~-----gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 90 GSITEWDLHTLKQKYNIDSN-----GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP 164 (691)
T ss_pred ceEEEEecccCceeEEecCC-----CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC
Confidence 99999999987654444332 238999999999999999999998877777766543322 222 299999999
Q ss_pred CCCcEEEEecCCCeEEEEEcccCCcceee-------ecC-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059 219 KKKHLLVTAADESGIHLWDLRMLKAPIQE-------LPG-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL 290 (346)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 290 (346)
++. .+++|+.||.|++||..... .+.. +.. -..-|++|.|-.++ .|++|..-|+|.+||...
T Consensus 165 ~~~-~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~------ 234 (691)
T KOG2048|consen 165 TGT-KIAGGSIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIF------ 234 (691)
T ss_pred Ccc-EEEecccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccC------
Confidence 997 79999999999999998744 3331 111 22346777777664 799999999999999998
Q ss_pred CcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+.+++.+..|.+.|.+++-.+++. .+++++.|+.|..|...
T Consensus 235 -------------gTLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 235 -------------GTLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLT 275 (691)
T ss_pred -------------cchhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEec
Confidence 899999999999999999999987 88999999999887654
No 144
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.4e-25 Score=195.87 Aligned_cols=253 Identities=18% Similarity=0.307 Sum_probs=189.1
Q ss_pred EeeecCCCCceEEE-Eeec------CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC---cEEEE
Q 019059 70 DLSSCPFDQRIFST-VFST------GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH---DKLVS 139 (346)
Q Consensus 70 ~~~~~~~~~~l~~~-~~~~------~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~ 139 (346)
.++|+|.+..++++ ...+ +.+.++.+|.+...... .+.+++..+ ......+.++|.+.+.. +++.|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~---~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES---SDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc---ccccccccc-cccccceeeeecccCCCccceeecc
Confidence 46899988733332 2111 23556778877632221 112344444 23567889999988876 35556
Q ss_pred ecCCeEEEEEcCCC-CCCceeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCccceeec---cc-eeE
Q 019059 140 IDEENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEH---AH-VRN 213 (346)
Q Consensus 140 ~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~-v~~ 213 (346)
.+||.|.+||...- .............|...|.++.|++... .|++|++||.|.|||+...+....... .. |.+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 88999999998752 1111222233456888999999999877 678888899999999998665444421 12 999
Q ss_pred EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc--ceEEEEeCCCCCcEEEEecCCC---eEEEEecCCCCCC
Q 019059 214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH--WTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHD 288 (346)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~ 288 (346)
++|+..-..+|++++.+|.+.|||+|. ++++..+..+.. .+..++|+|+....|++++.|. .|.+||+|.
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~---- 241 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF---- 241 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc----
Confidence 999998887999999999999999998 567777766554 4678999999988888888765 799999997
Q ss_pred CCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
...+++.+.+|...|.++.|++.+.++|++++.|++|.+|+.+
T Consensus 242 --------------assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 242 --------------ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred --------------cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 3677888899999999999999987799999999999999975
No 145
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=5.2e-22 Score=171.82 Aligned_cols=296 Identities=12% Similarity=0.177 Sum_probs=207.8
Q ss_pred CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG 103 (346)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~ 103 (346)
.++.-.++++|. .++.+.+|++...+ ...++.++...|+++.=+|-=..++. |-.+|+|.++|+.
T Consensus 168 P~TYLNKIvvGs----~~G~lql~Nvrt~K---~v~~f~~~~s~IT~ieqsPaLDVVai----G~~~G~ViifNlK---- 232 (910)
T KOG1539|consen 168 PSTYLNKIVVGS----SQGRLQLWNVRTGK---VVYTFQEFFSRITAIEQSPALDVVAI----GLENGTVIIFNLK---- 232 (910)
T ss_pred chhheeeEEEee----cCCcEEEEEeccCc---EEEEecccccceeEeccCCcceEEEE----eccCceEEEEEcc----
Confidence 444556677763 67889999988753 34567788899999999996655555 4689999999998
Q ss_pred CCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec---------------------
Q 019059 104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK--------------------- 162 (346)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~--------------------- 162 (346)
..+.+.+++...+.|+.++|..||..++++++..|.+.+||++..+....+...
T Consensus 233 -----~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 233 -----FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG 307 (910)
T ss_pred -----cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence 778888996556999999999999987777777899999999865433222210
Q ss_pred ---------------------ccCCCceeeEEEEeC-CCCCcEEEEecCCeEE---------------------------
Q 019059 163 ---------------------QSSGMLHYLSGGAWD-PHDVNAVAATCESSVQ--------------------------- 193 (346)
Q Consensus 163 ---------------------~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~--------------------------- 193 (346)
...+|..+..++.|. .++..+.+++.|++++
T Consensus 308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 012344444445444 3344444444444322
Q ss_pred --------------------------------------EEEccCCCc-cceeecc-----c--eeEEEeCCCCCcEEEEe
Q 019059 194 --------------------------------------FWDLRSMGK-TNSIEHA-----H--VRNVDYDTKKKHLLVTA 227 (346)
Q Consensus 194 --------------------------------------i~d~~~~~~-~~~~~~~-----~--v~~~~~~~~~~~~l~~~ 227 (346)
.|+.+.... ...+.+. . +++++.++-|+ +.+.|
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG 466 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIG 466 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEe
Confidence 222222211 0111111 1 77888888887 78889
Q ss_pred cCCCeEEEEEcccCCcceeee---cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCc-----
Q 019059 228 ADESGIHLWDLRMLKAPIQEL---PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESP----- 299 (346)
Q Consensus 228 ~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----- 299 (346)
...|.|-+|++++ +.....+ ..|..+|+.++....+ +.+++++.+|.+++||....... ..-....+.
T Consensus 467 ~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~--~~l~l~~~~~~iv~ 542 (910)
T KOG1539|consen 467 YSKGTIDRFNMQS-GIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLK--KSLRLGSSITGIVY 542 (910)
T ss_pred ccCCeEEEEEccc-CeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCccee--eeeccCCCcceeee
Confidence 9999999999997 5455666 4799999999999888 99999999999999999874310 000000000
Q ss_pred -------------------cccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 300 -------------------NQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 300 -------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.....+.+..+.+|...|++++|||+|+ .|++++.|++||+||+-
T Consensus 543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLP 606 (910)
T ss_pred eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEecc
Confidence 0123345677889999999999999997 78999999999999974
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.3e-23 Score=166.44 Aligned_cols=234 Identities=17% Similarity=0.289 Sum_probs=183.8
Q ss_pred CcceEEEeecccCCCCeEEEEEecCCCCeEEEe------------------eeeccccceEEeeecCCCCceEEEEeecC
Q 019059 27 DHTSFLTGTLSLKEENEVHLLRLSSGGTELICE------------------GLFSHPNEIWDLSSCPFDQRIFSTVFSTG 88 (346)
Q Consensus 27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~~l~~~~~~~~ 88 (346)
.+.-+++|++ +..|.+|+++-....+... ...+|.+.|.+++|+..-+.+++. |+
T Consensus 191 ~gNyvAiGtm----dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS---gs 263 (463)
T KOG0270|consen 191 AGNYVAIGTM----DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS---GS 263 (463)
T ss_pred CcceEEEecc----CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe---cC
Confidence 3457788875 4589999987432222111 123699999999999998888887 69
Q ss_pred CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
.|.+|++||+. .+++..++..|...|.++.|+|.....+++|+.|++|.+.|.+.......... ..
T Consensus 264 aD~TV~lWD~~---------~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-----~~ 329 (463)
T KOG0270|consen 264 ADKTVKLWDVD---------TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-----FD 329 (463)
T ss_pred CCceEEEEEcC---------CCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-----ec
Confidence 99999999999 88999999889999999999999998888999999999999995332222211 23
Q ss_pred eeeEEEEeCCCCCcEE-EEecCCeEEEEEccCC-Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059 169 HYLSGGAWDPHDVNAV-AATCESSVQFWDLRSM-GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~-~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 243 (346)
..|..++|+|.....+ ++..||+|+-+|+|.. +++.++. +| |.+|++++.-++++++++.|+.|++|++....
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~- 407 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS- 407 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCC-
Confidence 3799999999877644 5557999999999977 6777776 66 99999999999899999999999999987522
Q ss_pred ceeeecCCC---cceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 244 PIQELPGHT---HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 244 ~~~~~~~~~---~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+.. ...|. +...|.++.|+-+..++.|+..+.++|||+.+
T Consensus 408 ~~~-v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 408 PKS-VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred Ccc-cccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 221 11222 34677888888878889999999999999987
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=6.4e-22 Score=167.98 Aligned_cols=306 Identities=19% Similarity=0.267 Sum_probs=217.1
Q ss_pred eeeecccceeeEeeeccCCCCcc-eEEEeecccCCCCeEEEEEecCCC--C---------------e-EEE---------
Q 019059 7 GIGYGLKYQARCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSGG--T---------------E-LIC--------- 58 (346)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~--~---------------~-~~~--------- 58 (346)
...-.++.+..+|.++.+..-.. .+.+. +.+.+..|++|++.... . . ...
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~la--S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLA--SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEE--ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 44445666677777777544332 33332 23578899999876432 0 0 000
Q ss_pred -eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee---eccCCceEEEEeecCCCC
Q 019059 59 -EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL---DAHVGKINCVLWWSSGRH 134 (346)
Q Consensus 59 -~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 134 (346)
..+.+|.+.|.++.|+|.+..|+++ +.|.++.+|.-++. +.-......+ .+.........|+|++.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSA----SaDksmiiW~pd~~-----tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~- 329 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSA----SADKSMIIWKPDEN-----TGIWVDVVRLGEVGGSAGGFWGGLWSPNSN- 329 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheec----ccCcceEEEecCCc-----cceEEEEEEeecccccccceeeEEEcCCCC-
Confidence 2245999999999999999888886 69999999987621 0112222222 23345688999999997
Q ss_pred cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-------------
Q 019059 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG------------- 201 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------- 201 (346)
.+++.+..|..++|... ....-.......+|...|.+++|+|.|.+|++++.|.+-|++-.-..+
T Consensus 330 ~ii~~g~~Gg~hlWkt~--d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTK--DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG 407 (764)
T ss_pred EEEEecccCcEEEEecc--CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc
Confidence 46666889999999932 222223334457899999999999999999999999887775321000
Q ss_pred ----------------------ccceee----------------------------------------------------
Q 019059 202 ----------------------KTNSIE---------------------------------------------------- 207 (346)
Q Consensus 202 ----------------------~~~~~~---------------------------------------------------- 207 (346)
.++.+.
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence 000000
Q ss_pred ----------------------------------ccc---eeEEEeCCCCCcEEEEecCC-----CeEEEEEcccCCcce
Q 019059 208 ----------------------------------HAH---VRNVDYDTKKKHLLVTAADE-----SGIHLWDLRMLKAPI 245 (346)
Q Consensus 208 ----------------------------------~~~---v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~ 245 (346)
-+| |.+++.+|+++ ++++++.. ..|++|+..+. ..+
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W-~~~ 565 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANW-LQV 565 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccch-hhh
Confidence 013 88999999998 88887754 35889998874 456
Q ss_pred eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059 246 QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 246 ~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (346)
..+.+|.-.|+.++|||++ ++|++.+.|.++.+|........+ ......+.|+.-|++.+|+|+
T Consensus 566 ~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e---------------~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDE---------------FRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred heecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchh---------------hhhccccccceEEEEcccCcc
Confidence 7899999999999999999 999999999999999886511111 112336789999999999999
Q ss_pred CCcEEEEeecCCeEEEeeec
Q 019059 326 EPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 326 ~~~~l~s~~~d~~v~vw~~~ 345 (346)
+. .++|+|.|.+|++|.+.
T Consensus 630 e~-~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 630 EK-YFATASRDKKVKVWEEP 648 (764)
T ss_pred cc-eeEEecCCceEEEEecc
Confidence 97 79999999999999875
No 148
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=9.4e-22 Score=161.31 Aligned_cols=307 Identities=13% Similarity=0.193 Sum_probs=209.1
Q ss_pred eEeeeccCCCCcceEEEeeccc----CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcce
Q 019059 17 RCISDVKADTDHTSFLTGTLSL----KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG 92 (346)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~ 92 (346)
..+..+...|+..+++.|.... .....+++|+--.... ...+-.....|.+++|++-+.--..+..+.+.+..
T Consensus 105 ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~ 181 (626)
T KOG2106|consen 105 DDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHM 181 (626)
T ss_pred CceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---eeeeccccccceeeeecccCCCceEEEecCCCccc
Confidence 3566777888888888774432 1234566664332221 22222455689999999854332222335677888
Q ss_pred EEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059 93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS 172 (346)
Q Consensus 93 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 172 (346)
+.|||.. ........+...+.|....|+|.++.++++.+ .+.+.+|+.+++....+.-..+... ...|.
T Consensus 182 lSVWdWq---------k~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~e-kk~Vl 250 (626)
T KOG2106|consen 182 LSVWDWQ---------KKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKRE-KKFVL 250 (626)
T ss_pred cchhhch---------hhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeecccccc-ceEEE
Confidence 9999998 45555556666788999999999997555554 7999999998776444433322222 36899
Q ss_pred EEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc------
Q 019059 173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA------ 243 (346)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------ 243 (346)
+++|.+++. ++++.++|.|.||+..+.+..+... .| |.++..-.+|. |++|+.|..|..||-. .++
T Consensus 251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~-y~k~r~~el 325 (626)
T KOG2106|consen 251 CVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDN-YRKLRETEL 325 (626)
T ss_pred EEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEecccc-ccccccccC
Confidence 999999876 8899999999999998877666666 66 99999999996 6669999999999832 110
Q ss_pred -----cee-----------------------------eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC---
Q 019059 244 -----PIQ-----------------------------ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN--- 286 (346)
Q Consensus 244 -----~~~-----------------------------~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~--- 286 (346)
+++ ...+|......++.+|+. .++++++.|+.+++|+-....
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~~~k~~wt~ 404 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWNDHKLEWTK 404 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEccCCceeEEE
Confidence 111 123577778889999999 999999999999999922210
Q ss_pred CCCCCcccccCCccc----------------cccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 287 HDELPSESLVESPNQ----------------RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 287 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
..+.+.......|.. .....+..... ..+++.++|+|+|. +||.|+.|+.|+||.++
T Consensus 405 ~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 405 IIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEEC
Confidence 001111111111100 11122222222 66899999999997 99999999999999874
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=161.93 Aligned_cols=245 Identities=12% Similarity=0.171 Sum_probs=183.1
Q ss_pred CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecC-CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSS-GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (346)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 166 (346)
-+.+.|++||.. +++.+..++++...++.+.|..+ +.+.+++++.||.|++||++...+.........+
T Consensus 47 lSngsv~lyd~~---------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 47 LSNGSVRLYDKG---------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred ecCCeEEEEecc---------chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 477899999998 78899999999999999999875 6677888888999999999987655555444322
Q ss_pred CceeeEEEEeCCCCCcEEEEec----CCeEEEEEccCCCc-cceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEc
Q 019059 167 MLHYLSGGAWDPHDVNAVAATC----ESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL 238 (346)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 238 (346)
..+..+++.+-.++.++++.. +..|.+||.|..+. ++.+...| |+++.|+|..+++|++|+.||-|.+||+
T Consensus 117 -~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 117 -GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred -CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 235667776656666666653 67899999998876 77777777 9999999999999999999999999999
Q ss_pred ccCCc--ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc-ccCC----------------c
Q 019059 239 RMLKA--PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES-LVES----------------P 299 (346)
Q Consensus 239 ~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~----------------~ 299 (346)
..... ++...-.|...|.++.|..++-..|.+-+...+..+|+++.+......... .... +
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~ 275 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP 275 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence 86432 333444578889999999887567999999999999999876421100000 0000 0
Q ss_pred -------------------------ccccccccccccc-ccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 300 -------------------------NQRANSLLNSYSD-YEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 300 -------------------------~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
.....+.+..+.+ |...|+++.|...+. ++.+||+||.+.+|..
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGLLQAWKV 345 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCceEEEEec
Confidence 0011222333444 666788899987776 9999999999999984
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.3e-23 Score=168.86 Aligned_cols=218 Identities=16% Similarity=0.212 Sum_probs=179.0
Q ss_pred EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW 148 (346)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vw 148 (346)
.|++......++++ ||..+.|+|||+. ...+.+.++.|++.|+++.++....+ +++.+..|.|.|.
T Consensus 83 ~Cv~~~s~S~y~~s----gG~~~~Vkiwdl~---------~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdiiih 148 (673)
T KOG4378|consen 83 FCVACASQSLYEIS----GGQSGCVKIWDLR---------AKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDIIIH 148 (673)
T ss_pred HHHhhhhcceeeec----cCcCceeeehhhH---------HHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEEEE
Confidence 44444444567766 5899999999998 55666778999999999999988886 5555778999999
Q ss_pred EcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEE-EEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEE
Q 019059 149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224 (346)
Q Consensus 149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l 224 (346)
.+.++.....+.... ...+.-+.|+|..++++ +++.+|.|.+||.....+...+...| ...|+|+|..+.+|
T Consensus 149 ~~~t~~~tt~f~~~s----gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDS----GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred ecccCccccceecCC----CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 998876554443321 22677899999887755 55678999999999998888887777 88999999999889
Q ss_pred EEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (346)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
++.+.|+.|.+||++. +.....+. ...+.+.++|.++| .+|+.|+..|.|..||++. ..
T Consensus 225 vsVG~Dkki~~yD~~s-~~s~~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~------------------~k 283 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRS-QASTDRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRS------------------TK 283 (673)
T ss_pred EEecccceEEEeeccc-ccccceee-ecCCcceeeecCCc-eEEEeecCCceEEEEeccc------------------CC
Confidence 9999999999999996 44454444 46789999999999 9999999999999999998 47
Q ss_pred ccccccccccceeeEEEeCCC
Q 019059 305 SLLNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~ 325 (346)
.++.++..|...|++++|.|.
T Consensus 284 ~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 284 APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred CCceEeeecccceeEEEeeec
Confidence 788999999999999999885
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=5.6e-22 Score=168.32 Aligned_cols=278 Identities=19% Similarity=0.267 Sum_probs=198.2
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCC-ceEEEEeecCCcceEEEEecCcccCCC------------CCc
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQL------------NSP 108 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~------------~~~ 108 (346)
..+.+.... ..+......+.+|.+.|.+++|...+. .++.+. +++|..|+||.+....... +.+
T Consensus 169 ~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS--~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~ 245 (764)
T KOG1063|consen 169 FVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLAS--SSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLP 245 (764)
T ss_pred eEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEe--cCCceEEEEEEEEecCCccccccccccccccCCc
Confidence 334444333 224445577899999999999987655 333332 6999999999986332110 111
Q ss_pred cceeee----------eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCce--eeecccCCCceeeEEEEe
Q 019059 109 QLERIA----------ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQ--VQSKQSSGMLHYLSGGAW 176 (346)
Q Consensus 109 ~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~ 176 (346)
...... .+.+|++.|+++.|+|.+.. +++++.|.++.+|..++..-... .......+......+..|
T Consensus 246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~-LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw 324 (764)
T KOG1063|consen 246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLD-LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW 324 (764)
T ss_pred eeeeeeeEEEEEehhhhhcCcccceEEEEEccchhh-heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence 111111 13489999999999999964 77777899999999876532222 222223333446788999
Q ss_pred CCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcc----------cC
Q 019059 177 DPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLR----------ML 241 (346)
Q Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~----------~~ 241 (346)
+|++..+++-+..|..++|-..... .......+| |++++|+|.|+ +|++.+.|-+-|+|-.- .+
T Consensus 325 ~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRP 403 (764)
T KOG1063|consen 325 SPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARP 403 (764)
T ss_pred cCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeeccc
Confidence 9999999999999999999833221 112223466 99999999998 67777777666654211 00
Q ss_pred C-------------------------------------------------------------------------------
Q 019059 242 K------------------------------------------------------------------------------- 242 (346)
Q Consensus 242 ~------------------------------------------------------------------------------- 242 (346)
.
T Consensus 404 QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~ 483 (764)
T KOG1063|consen 404 QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGG 483 (764)
T ss_pred ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccc
Confidence 0
Q ss_pred --------------------------------cceeeecCCCcceEEEEeCCCCCcEEEEecCC-----CeEEEEecCCC
Q 019059 243 --------------------------------APIQELPGHTHWTWAVCCNPEYDGFILSAGTD-----STVNLWLVSTS 285 (346)
Q Consensus 243 --------------------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d-----~~i~iwd~~~~ 285 (346)
..++.+.+|...|.+++.+|++ +++|++... ..|++|+..+
T Consensus 484 ~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~- 561 (764)
T KOG1063|consen 484 EAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTAN- 561 (764)
T ss_pred ccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccc-
Confidence 0123346788999999999999 999998864 3699999998
Q ss_pred CCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
...++.+.+|+-.|+.++||||++ +|++++.|+++.+|...
T Consensus 562 ------------------W~~~~~L~~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 562 ------------------WLQVQELEGHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred ------------------hhhhheecccceEEEEEEECCCCc-EEEEeecCceEEeeeee
Confidence 888889999999999999999997 89999999999999864
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.8e-23 Score=168.17 Aligned_cols=218 Identities=14% Similarity=0.170 Sum_probs=168.9
Q ss_pred cceeeeeeeccCCceEEEEeecCCC-CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC-CcEEEE
Q 019059 109 QLERIAALDAHVGKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD-VNAVAA 186 (346)
Q Consensus 109 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 186 (346)
.......++.+.++|++++|+|..+ .++++|...|+|-+||+.+.+... ........|..+|.++.|+|.. ..+++.
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-DGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-CceEEeccCCccccceEecCCChhheeee
Confidence 3445556778899999999999987 555566678999999996332211 1112234577799999999965 568888
Q ss_pred ecCCeEEEEEccCCCccceeec--cc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059 187 TCESSVQFWDLRSMGKTNSIEH--AH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP 262 (346)
Q Consensus 187 ~~d~~i~i~d~~~~~~~~~~~~--~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 262 (346)
+.||+|++-|++.......+.. .. +.++.|+.+.. .++.+..=|...+||+|..+.....+..|...|++|+++|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 8999999999997753332222 23 88899998888 5666666679999999997776777888999999999999
Q ss_pred CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059 263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 263 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw 342 (346)
..+.+|||+|.|++.+|||++...... .++.....|...|.+..|||.+. .|++.+.|..|+||
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~---------------sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKA---------------SPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVF 396 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCC---------------CcceecccccceeeeeEEcCCCC-ceEeeccCCceEEe
Confidence 999999999999999999999722111 12233346888999999999997 58999999999999
Q ss_pred ee
Q 019059 343 ML 344 (346)
Q Consensus 343 ~~ 344 (346)
|.
T Consensus 397 ds 398 (498)
T KOG4328|consen 397 DS 398 (498)
T ss_pred ec
Confidence 86
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=1.3e-21 Score=152.17 Aligned_cols=277 Identities=16% Similarity=0.222 Sum_probs=200.7
Q ss_pred EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC----------eEEEeeeeccccceEEeeec-------CCCCce
Q 019059 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT----------ELICEGLFSHPNEIWDLSSC-------PFDQRI 80 (346)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~h~~~v~~~~~~-------~~~~~l 80 (346)
.+..+.++|++..+++. .+++.+.+|.++.+.. ......-......|.+.+|- |+...+
T Consensus 51 f~kgckWSPDGSciL~~----sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSL----SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hhccceeCCCCceEEee----cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 44456788999888775 4788899999875411 11111122234667777774 444444
Q ss_pred EEEEeecCCcceEEEEecCcccCCCCCccceeeeeee--ccCCc---eEEEEeecCCCCcEEEEecCCeEEEEEcCC-CC
Q 019059 81 FSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD--AHVGK---INCVLWWSSGRHDKLVSIDEENIFLWSLDC-SN 154 (346)
Q Consensus 81 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~---i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~-~~ 154 (346)
++ .+.+.-|++||.- +++....+. .|.+. ..+++|+|||.+ +++ +....|+++|+.. +.
T Consensus 127 a~----ssr~~PIh~wdaf---------tG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lfa-GykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 127 AV----SSRDQPIHLWDAF---------TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LFA-GYKRCIRVFDTSRPGR 191 (406)
T ss_pred ee----ccccCceeeeecc---------ccccccchhhhhhHHhhhhheeEEecCCCCe-Eee-cccceEEEeeccCCCC
Confidence 44 4789999999987 555555543 34333 468999999995 444 4689999999943 33
Q ss_pred CCc--eeeecccCCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEec
Q 019059 155 KNA--QVQSKQSSGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAA 228 (346)
Q Consensus 155 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~ 228 (346)
... ....+...+...-+.+++|+|... .++.++....+-||.-..+.+...+. +| |+.+.|.++|+ .|++|.
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn-~lfsGa 269 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGN-KLFSGA 269 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcC-eecccc
Confidence 222 122222334456789999999665 68888888888888877777776665 66 99999999999 666665
Q ss_pred -CCCeEEEEEcccCCcceeeecCCCc-ceEEE--EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059 229 -DESGIHLWDLRMLKAPIQELPGHTH-WTWAV--CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (346)
Q Consensus 229 -~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~v--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
.|-.|-.||+|..+.++..+..|.. .-..| ...|++ ++|++|+.||.|++||++. .+
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~------------------~g 330 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKD------------------LG 330 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCC------------------CC
Confidence 5678999999998888888888776 33334 456888 9999999999999999997 36
Q ss_pred ccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335 (346)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (346)
..+..+..|+..++.++++|.-+ ++|+++.
T Consensus 331 n~~sv~~~~sd~vNgvslnP~mp-ilatssG 360 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNPIMP-ILATSSG 360 (406)
T ss_pred CcccccccccccccceecCcccc-eeeeccC
Confidence 67778888899999999999876 7777764
No 154
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-21 Score=169.78 Aligned_cols=255 Identities=15% Similarity=0.218 Sum_probs=191.4
Q ss_pred eeeccCCCCcceEEEeecccCCCCeEEEEEecCC-CCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSG-GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ 97 (346)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~ 97 (346)
.+.+..++++. |++. .+.++.|..|+...+ ..+ ..+..+...|.+++... .+++++ +.+++|.+|.
T Consensus 16 ~t~i~~d~~ge-fi~t---cgsdg~ir~~~~~sd~e~P---~ti~~~g~~v~~ia~~s--~~f~~~----s~~~tv~~y~ 82 (933)
T KOG1274|consen 16 LTLICYDPDGE-FICT---CGSDGDIRKWKTNSDEEEP---ETIDISGELVSSIACYS--NHFLTG----SEQNTVLRYK 82 (933)
T ss_pred eEEEEEcCCCC-EEEE---ecCCCceEEeecCCcccCC---chhhccCceeEEEeecc--cceEEe----eccceEEEee
Confidence 44555666665 4432 367888999886654 221 22222778888887654 466664 6999999999
Q ss_pred cCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC
Q 019059 98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD 177 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 177 (346)
++ .++.-..+...+-++.+++|+.+|++ ++++++|-.|++.++........+ .+|..+|.++.|+
T Consensus 83 fp---------s~~~~~iL~Rftlp~r~~~v~g~g~~-iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~ 147 (933)
T KOG1274|consen 83 FP---------SGEEDTILARFTLPIRDLAVSGSGKM-IAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYD 147 (933)
T ss_pred CC---------CCCccceeeeeeccceEEEEecCCcE-EEeecCceeEEEEeccccchheee-----cccCCceeeeeEc
Confidence 98 44444445556778999999999995 777788999999999876543333 3577799999999
Q ss_pred CCCCcEEEEecCCeEEEEEccCCCccceeec---------cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059 178 PHDVNAVAATCESSVQFWDLRSMGKTNSIEH---------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247 (346)
Q Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 247 (346)
|++.+|++.+.||.|++||+.++....++.. .. +..++|+|++. .++....|+.|++|+.... .+...
T Consensus 148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~w-e~~f~ 225 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGW-ELQFK 225 (933)
T ss_pred CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCc-eehee
Confidence 9999999999999999999999887665541 11 78899999987 5677778899999998763 34444
Q ss_pred ec--CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059 248 LP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 248 ~~--~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (346)
+. .+...+..+.|+|+| .|||+++.||.|.|||..+ -+. ......|.+++|.|+
T Consensus 226 Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t-------------------~~~----~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDT-------------------HER----HEFKRAVCCEAWKPN 281 (933)
T ss_pred ecccccccceEEEEEcCCC-cEEeeeccCCcEEEEeccc-------------------chh----ccccceeEEEecCCC
Confidence 43 244559999999999 9999999999999999996 221 122446999999998
Q ss_pred CC
Q 019059 326 EP 327 (346)
Q Consensus 326 ~~ 327 (346)
.+
T Consensus 282 ~n 283 (933)
T KOG1274|consen 282 AN 283 (933)
T ss_pred CC
Confidence 87
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=4.3e-22 Score=167.80 Aligned_cols=137 Identities=23% Similarity=0.385 Sum_probs=115.1
Q ss_pred CCeEEEEEccCCCcc-----ceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC------cceeeecCCCcceE
Q 019059 189 ESSVQFWDLRSMGKT-----NSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK------APIQELPGHTHWTW 256 (346)
Q Consensus 189 d~~i~i~d~~~~~~~-----~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~ 256 (346)
.|.|-||+++..-.+ ..+..+. |+.+.|+|.+...|+++++||.|++|.+...+ .+...+..|...|+
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 344677777643321 2222333 99999999988899999999999999987533 35677889999999
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059 257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336 (346)
Q Consensus 257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (346)
++.|+|--...|++++.|-+|++||+++ .+....+.+|.+.|.+++|||+|+ .+|+.+.|
T Consensus 682 slRfHPLAadvLa~asyd~Ti~lWDl~~-------------------~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKD 741 (1012)
T KOG1445|consen 682 SLRFHPLAADVLAVASYDSTIELWDLAN-------------------AKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKD 741 (1012)
T ss_pred EEEecchhhhHhhhhhccceeeeeehhh-------------------hhhhheeccCcCceeEEEECCCCc-ceeeeecC
Confidence 9999998878999999999999999998 888889999999999999999997 89999999
Q ss_pred CeEEEeeec
Q 019059 337 GRVRNHMLE 345 (346)
Q Consensus 337 ~~v~vw~~~ 345 (346)
|+|++|+..
T Consensus 742 g~~rVy~Pr 750 (1012)
T KOG1445|consen 742 GTLRVYEPR 750 (1012)
T ss_pred ceEEEeCCC
Confidence 999999754
No 156
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=1.2e-21 Score=150.19 Aligned_cols=258 Identities=16% Similarity=0.268 Sum_probs=187.2
Q ss_pred eccccceEEeeec--CCCC-ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCC----C
Q 019059 62 FSHPNEIWDLSSC--PFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGR----H 134 (346)
Q Consensus 62 ~~h~~~v~~~~~~--~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~ 134 (346)
+.-+-.+.++.|+ |+.+ +|+.+.+.......|.|-.+.+. ..+.....++ .|.-+++.+.|.|+.. .
T Consensus 41 Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~-----s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 41 YNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDED-----SGELVEDANF-DHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccC-----CCceeccCCC-CCCCCccceEecCCccccCcc
Confidence 3445678889998 3434 44444333334567888777631 1122222333 7888999999999873 2
Q ss_pred cEEEEecCCeEEEEEcCCCCCCcee----eecccCCCceeeEEEEeCCCCCcE-EEEecCCeEEEEEccCCCc--cceee
Q 019059 135 DKLVSIDEENIFLWSLDCSNKNAQV----QSKQSSGMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMGK--TNSIE 207 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~--~~~~~ 207 (346)
+++++ +..+++|.+......... .......+..+++++.|+.-...+ .+.+-|.+..|||++++.. +++.-
T Consensus 115 -lLATs-~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 -LLATS-SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred -hhhcc-cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 34443 469999998743221111 112233455689999999866554 4555699999999999743 33333
Q ss_pred ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CCcceEEEEeCCCCCcEEEEecCCC-eEEEEe
Q 019059 208 HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDS-TVNLWL 281 (346)
Q Consensus 208 ~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d~-~i~iwd 281 (346)
.+| |..|+|...+..+|++.+.||.||+||+|......-.++. ...+...++|+++.++++|+-..|. .|.|.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 355 9999999988889999999999999999975543333332 2467889999999989999877765 799999
Q ss_pred cCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 282 VSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++. ...++..+.+|.+.|+.++|.|..+..+++++.|..+.+||++
T Consensus 273 iR~------------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 273 IRV------------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred ecC------------------CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 998 4788999999999999999999888899999999999999985
No 157
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.4e-22 Score=155.08 Aligned_cols=212 Identities=17% Similarity=0.274 Sum_probs=157.9
Q ss_pred eeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC--CceeeecccCCCceeeEEEEeCCCCCcEEEEec-CC
Q 019059 114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK--NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ES 190 (346)
Q Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~ 190 (346)
..+++|...|++++|+.||++ +++.+.|+.|++|+++.-.. ...+...-..+ ..+.++|.||.+.+++... ..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKK-LATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCCce-eEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEEEEEccCC
Confidence 357899999999999999996 66667899999999875211 11111111112 4578899999988777664 56
Q ss_pred eEEEEEccCCC---ccc--------eeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE
Q 019059 191 SVQFWDLRSMG---KTN--------SIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW 256 (346)
Q Consensus 191 ~i~i~d~~~~~---~~~--------~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 256 (346)
++++|-+...+ ... .+...| +..+-....+. ++++++.|..|.+|+++ ++.+..+......-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Cceeeeecccccccc
Confidence 89999876332 111 122223 55566666666 89999999999999998 667777777777778
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059 257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336 (346)
Q Consensus 257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (346)
..+.||+| +++++++.---|++|..-..+.... +.-..++.+++|++.|..++|+++.. .+++.|.|
T Consensus 233 ~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~f-----------qev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkD 299 (420)
T KOG2096|consen 233 DAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTF-----------QEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKD 299 (420)
T ss_pred ceeeCCCC-cEEEEecCCCCceEEEEEeccCcch-----------hhhhhhheeccchhheeeeeeCCCcc-eeEEEecC
Confidence 88999999 9999999888899998754221111 11355778899999999999999986 89999999
Q ss_pred CeEEEeeec
Q 019059 337 GRVRNHMLE 345 (346)
Q Consensus 337 ~~v~vw~~~ 345 (346)
|+++|||.+
T Consensus 300 G~wriwdtd 308 (420)
T KOG2096|consen 300 GKWRIWDTD 308 (420)
T ss_pred CcEEEeecc
Confidence 999999974
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.1e-22 Score=153.43 Aligned_cols=248 Identities=15% Similarity=0.165 Sum_probs=180.5
Q ss_pred ccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC
Q 019059 63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE 142 (346)
Q Consensus 63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 142 (346)
.|+. ..|+.|++.|.+|+++ ..+|.|-+||+. +....+.+.+|..+|.+++||++|+. +++++.|
T Consensus 22 d~~~-a~~~~Fs~~G~~lAvG----c~nG~vvI~D~~---------T~~iar~lsaH~~pi~sl~WS~dgr~-LltsS~D 86 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWGDYLAVG----CANGRVVIYDFD---------TFRIARMLSAHVRPITSLCWSRDGRK-LLTSSRD 86 (405)
T ss_pred cCCc-cceEEeccCcceeeee----ccCCcEEEEEcc---------ccchhhhhhccccceeEEEecCCCCE-eeeecCC
Confidence 3444 7899999999999886 499999999998 67778889999999999999999994 8888899
Q ss_pred CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCC--ccceeeccc----eeEEE
Q 019059 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMG--KTNSIEHAH----VRNVD 215 (346)
Q Consensus 143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~~~~~~~~----v~~~~ 215 (346)
..|.+||+..+....++.. ..+|..+.|+|.....+.++ -+..-.+.++..++ .+..-..+. ..+..
T Consensus 87 ~si~lwDl~~gs~l~rirf------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRF------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred ceeEEEeccCCCceeEEEc------cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence 9999999998886655554 33899999999877766655 23334455554422 111111111 44557
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES 294 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 294 (346)
|++.|+ ++++|...|.+.++|..+. +++..++... ..|..+.++..| +.|+.-+.|..||.|+++.......
T Consensus 161 fdr~g~-yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r---- 233 (405)
T KOG1273|consen 161 FDRRGK-YIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGR---- 233 (405)
T ss_pred ccCCCC-EEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCc----
Confidence 899998 8999999999999999984 5777777655 789999999999 9999999999999999884111100
Q ss_pred ccCCcccccccccccccc--ccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 295 LVESPNQRANSLLNSYSD--YEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
....++.+.++. ...+-.++.|+.+|.+++++...-..++||.-
T Consensus 234 ------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 234 ------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred ------cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec
Confidence 000122222221 22234678899999855555555667999963
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=3e-21 Score=161.62 Aligned_cols=220 Identities=12% Similarity=0.066 Sum_probs=156.7
Q ss_pred cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (346)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 166 (346)
++.|+.+.+||+. +.+.+..+..+. .+.+++|+|+++.++++++.++.|++||..+++....+..
T Consensus 7 ~~~d~~v~~~d~~---------t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----- 71 (300)
T TIGR03866 7 NEKDNTISVIDTA---------TLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----- 71 (300)
T ss_pred ecCCCEEEEEECC---------CCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----
Confidence 4789999999987 556667776554 4678999999986445566789999999987653322211
Q ss_pred CceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC-eEEEEEcccCCc
Q 019059 167 MLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES-GIHLWDLRMLKA 243 (346)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~ 243 (346)
+ ..+..++|+|+++.+++++ .++.|++||+++.+.+..+..+. +.+++|+|++. +++++..++ .+.+||.++ ..
T Consensus 72 ~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~-~~ 148 (300)
T TIGR03866 72 G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKT-YE 148 (300)
T ss_pred C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCC-Ce
Confidence 1 1346789999999887665 58999999999887776665444 88999999998 677766654 577889876 33
Q ss_pred ceeeecCCCcceEEEEeCCCCCcEE-EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc-------cc
Q 019059 244 PIQELPGHTHWTWAVCCNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY-------ED 315 (346)
Q Consensus 244 ~~~~~~~~~~~v~~v~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 315 (346)
....+. ....+..+.|+|++ .+| +++..++.|++||+++ ++.+..+..+ ..
T Consensus 149 ~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~-------------------~~~~~~~~~~~~~~~~~~~ 207 (300)
T TIGR03866 149 IVDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVAT-------------------RKVIKKITFEIPGVHPEAV 207 (300)
T ss_pred EEEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCc-------------------ceeeeeeeecccccccccC
Confidence 333332 23455789999999 666 4555699999999997 4443332211 11
Q ss_pred eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 316 SVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 316 ~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
....++|+|+++.++++.+.++.+.+||++
T Consensus 208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 235688999998555666667889999975
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=9.1e-22 Score=150.68 Aligned_cols=229 Identities=12% Similarity=0.212 Sum_probs=170.3
Q ss_pred CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec---C----CeEEEEEcCCCCCCceeee
Q 019059 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID---E----ENIFLWSLDCSNKNAQVQS 161 (346)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---d----~~i~vwd~~~~~~~~~~~~ 161 (346)
.|..|.+..++... ..-....+..|.+.|..++-+|-.+.++.++.. | ..+.||.+...........
T Consensus 38 ~dNqVhll~~d~e~------s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t 111 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEG------SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST 111 (370)
T ss_pred CcceeEEEEecCcc------chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch
Confidence 46778888776311 112223455678899999999998875555532 1 3467999876543311111
Q ss_pred -----cccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc-cceee----c--cc-eeEEEeCC--CCCcEEEE
Q 019059 162 -----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIE----H--AH-VRNVDYDT--KKKHLLVT 226 (346)
Q Consensus 162 -----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~----~--~~-v~~~~~~~--~~~~~l~~ 226 (346)
.-...+...+.++.|.|++..+++-. |..|.+|++..... +..+. . .+ .++-+|+| ++. .+++
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~t 189 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVAT 189 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEE
Confidence 11123445889999999988887765 88999999997765 33222 1 12 88889998 343 4554
Q ss_pred ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc
Q 019059 227 AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL 306 (346)
Q Consensus 227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (346)
..|+++..||+|+.++....-..|...|..+.|+|+...+|++++.||.|+|||.+. ...+
T Consensus 190 -t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~------------------tk~p 250 (370)
T KOG1007|consen 190 -TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK------------------TKFP 250 (370)
T ss_pred -eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC------------------CCcc
Confidence 457899999999866545555579999999999999988999999999999999998 4788
Q ss_pred ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
++.+.+|..+|+++.|+|....++.++|.|..|.+|..
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 99999999999999999976669999999999999864
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.2e-20 Score=145.88 Aligned_cols=257 Identities=18% Similarity=0.261 Sum_probs=187.6
Q ss_pred EeeeccCCCCcceEEEeecccCCCCeEEEEEecC-CCCeEEEeeeeccccceEEeeec-CCCCceEEEEeecCCcceEEE
Q 019059 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSS-GGTELICEGLFSHPNEIWDLSSC-PFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~~~~~d~~i~v 95 (346)
-+.++.++..+.|++.+ ..++.+.+|++.+ .++.-.......|.+.|..+.|. |.-..+++++ +.|+++.|
T Consensus 15 lihdVs~D~~GRRmAtC----SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c---S~Drtv~i 87 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATC----SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC---SYDRTVSI 87 (361)
T ss_pred eeeeeeecccCceeeec----cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEE---ecCCceee
Confidence 46677888899999887 4688999999654 44555556778899999999994 5555555553 79999999
Q ss_pred EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCce--------eeecccCC
Q 019059 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQ--------VQSKQSSG 166 (346)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~--------~~~~~~~~ 166 (346)
|.-.....+..........++....+.|+.++|.|....+.+++ +.||.++||+.-....... ........
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 98643233333345667778888889999999999877766666 7799999999764322111 11112234
Q ss_pred CceeeEEEEeCCCC---CcEEEEecC-----CeEEEEEccCCC----ccceeeccc---eeEEEeCCCCC---cEEEEec
Q 019059 167 MLHYLSGGAWDPHD---VNAVAATCE-----SSVQFWDLRSMG----KTNSIEHAH---VRNVDYDTKKK---HLLVTAA 228 (346)
Q Consensus 167 ~~~~v~~~~~~~~~---~~l~~~~~d-----~~i~i~d~~~~~----~~~~~~~~~---v~~~~~~~~~~---~~l~~~~ 228 (346)
+..+..++.|+|.. +.|++++.+ +.+.||...... .+.++. ++ |++|+|.|+-. +++++++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEee
Confidence 55678999999742 456666644 478888766443 223333 44 99999999742 3799999
Q ss_pred CCCeEEEEEcccCC-------------------cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 229 DESGIHLWDLRMLK-------------------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 229 ~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.|| |+||.++... ..+..+..|...|..+.|+-.| ..|++.|.||.||+|....
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhh
Confidence 999 9999987311 1344567899999999999999 9999999999999998765
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=2.1e-21 Score=155.12 Aligned_cols=292 Identities=17% Similarity=0.248 Sum_probs=209.0
Q ss_pred eEeeeccCCCCcc-eEEEeecccCCCCeEEEEEecCC---C---CeEEEeeeeccccceEEeeecCCCCceEEEEeecCC
Q 019059 17 RCISDVKADTDHT-SFLTGTLSLKEENEVHLLRLSSG---G---TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE 89 (346)
Q Consensus 17 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~---~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~ 89 (346)
.++..+.+..+.. +++.| +.+..|++|.+... + .......+..|...|+++.|+|+|..|++ |+.
T Consensus 14 ~pv~s~dfq~n~~~~laT~----G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS----g~D 85 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATA----GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLAS----GGD 85 (434)
T ss_pred CceEEEEeccCcccceecc----cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeee----cCC
Confidence 3555566655555 66665 46788999988643 2 22334667889999999999999988887 479
Q ss_pred cceEEEEecCcc-------cCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec
Q 019059 90 SYGAAIWQIPEL-------YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK 162 (346)
Q Consensus 90 d~~i~vw~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~ 162 (346)
++.|.+|..... ......+.+...+.+.+|...|..++|+|++.. +++++-|+.+++||+..+......
T Consensus 86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~--- 161 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAIL--- 161 (434)
T ss_pred CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEeec---
Confidence 999999986621 112223346677788899999999999999994 667778999999999977543322
Q ss_pred ccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee--------------------ccc-----eeEEEeC
Q 019059 163 QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--------------------HAH-----VRNVDYD 217 (346)
Q Consensus 163 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------~~~-----v~~~~~~ 217 (346)
.+|...+..++|.|.++++++-+.|...+.+++...+...... ... ...++|+
T Consensus 162 --~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT 239 (434)
T KOG1009|consen 162 --DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT 239 (434)
T ss_pred --cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence 3466799999999999999998888877666655433221111 011 6678999
Q ss_pred CCCCcEEEEecC----C-----CeEEEEEcccCCcceeeecCCCcceEEEEeCC------------------CCCcEEEE
Q 019059 218 TKKKHLLVTAAD----E-----SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP------------------EYDGFILS 270 (346)
Q Consensus 218 ~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~------------------~~~~~l~s 270 (346)
|+|. ++++... . ...++|+-...++|+..+.....+...+.|+| .+ ..+|.
T Consensus 240 PdG~-llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr-lvfai 317 (434)
T KOG1009|consen 240 PDGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR-LVFAI 317 (434)
T ss_pred CCCc-EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc-eEEEE
Confidence 9998 7776432 1 24467776665667777776667777777665 22 34555
Q ss_pred ecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-ccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++. +.|.|||.++ ..++... .-|-..|++++|+++|. .|+..|.||...+-.++
T Consensus 318 At~-~svyvydtq~-------------------~~P~~~v~nihy~~iTDiaws~dg~-~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 318 ATK-NSVYVYDTQT-------------------LEPLAVVDNIHYSAITDIAWSDDGS-VLLVSSTDGFCSLVTFE 372 (434)
T ss_pred eec-ceEEEecccc-------------------ccceEEEeeeeeeeecceeecCCCc-EEEEeccCCceEEEEEc
Confidence 554 5799999998 5665554 34888999999999997 88888999987776554
No 163
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.89 E-value=9.6e-20 Score=154.23 Aligned_cols=277 Identities=14% Similarity=0.184 Sum_probs=176.9
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
..++.|.+|++...+ .+.......+.+....++++|++++|+++. ..++.|.+|+++. ......+....
T Consensus 9 ~~~~~I~~~~~~~~g-~l~~~~~~~~~~~~~~l~~spd~~~lyv~~---~~~~~i~~~~~~~------~g~l~~~~~~~- 77 (330)
T PRK11028 9 PESQQIHVWNLNHEG-ALTLLQVVDVPGQVQPMVISPDKRHLYVGV---RPEFRVLSYRIAD------DGALTFAAESP- 77 (330)
T ss_pred CCCCCEEEEEECCCC-ceeeeeEEecCCCCccEEECCCCCEEEEEE---CCCCcEEEEEECC------CCceEEeeeec-
Confidence 456889999996433 333333334556788899999999888763 4578899999862 01122233322
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL 197 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~ 197 (346)
.......+.++|+++.++++...++.|.+|++++........... . .......++++|++++++++. .++.|.+||+
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-E-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-c-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 233567899999999655554558999999997543222211110 1 112467788999999987766 4699999999
Q ss_pred cCCCccc-------eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---cceeeecCC------CcceEEEEe
Q 019059 198 RSMGKTN-------SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQELPGH------THWTWAVCC 260 (346)
Q Consensus 198 ~~~~~~~-------~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~------~~~v~~v~~ 260 (346)
.+...+. ....+. +..++|+|++++++++...++.|.+||+.... ..+..+..+ ......+.+
T Consensus 156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 8643221 112233 78999999999444444448999999997421 122232211 122346889
Q ss_pred CCCCCcEEEEecC-CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059 261 NPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339 (346)
Q Consensus 261 ~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v 339 (346)
+|++ ++++++.. ++.|.+|++..... ..+.+..... ......+.++|+|++++++...+++|
T Consensus 236 ~pdg-~~lyv~~~~~~~I~v~~i~~~~~---------------~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 236 TPDG-RHLYACDRTASLISVFSVSEDGS---------------VLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred CCCC-CEEEEecCCCCeEEEEEEeCCCC---------------eEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcE
Confidence 9999 87877754 78999999975100 0111121111 12356799999998666666669999
Q ss_pred EEeeec
Q 019059 340 RNHMLE 345 (346)
Q Consensus 340 ~vw~~~ 345 (346)
.+|+++
T Consensus 299 ~v~~~~ 304 (330)
T PRK11028 299 SVYEID 304 (330)
T ss_pred EEEEEc
Confidence 999874
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=6.8e-21 Score=165.28 Aligned_cols=227 Identities=19% Similarity=0.245 Sum_probs=175.9
Q ss_pred ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC-ceeeecccCCCce
Q 019059 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN-AQVQSKQSSGMLH 169 (346)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~ 169 (346)
+.+.||++.. +..+...+ .....|.+++|+|....+++.|..+|+|.+||+..+... ..........|..
T Consensus 222 ~~~~vW~~~~--------p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~ 292 (555)
T KOG1587|consen 222 GVLLVWSLKN--------PNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSE 292 (555)
T ss_pred ceEEEEecCC--------CCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCc
Confidence 4789999983 24454455 446789999999999987888888999999999977653 2223333456788
Q ss_pred eeEEEEeCCCCCc--EEEEecCCeEEEEEccCCCccc------ee-------eccc-eeEEEeCCCCCcEEEEecCCCeE
Q 019059 170 YLSGGAWDPHDVN--AVAATCESSVQFWDLRSMGKTN------SI-------EHAH-VRNVDYDTKKKHLLVTAADESGI 233 (346)
Q Consensus 170 ~v~~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~------~~-------~~~~-v~~~~~~~~~~~~l~~~~~dg~i 233 (346)
++..+.|..+... +++++.||.|..|+++.-.... .. .... +++++|.+..++.+++|+++|.|
T Consensus 293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 9999999776555 9999999999999987543211 11 1112 99999999999899999999998
Q ss_pred EEEEcccCC-------cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc
Q 019059 234 HLWDLRMLK-------APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL 306 (346)
Q Consensus 234 ~i~d~~~~~-------~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (346)
.--+..... +....+..|.++|+++.++|-++..|.+++ |.+++||.... ...+
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~------------------~~~P 433 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV------------------IASP 433 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccC------------------CCCc
Confidence 774322211 124456678899999999999966777777 99999999883 1677
Q ss_pred ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 307 LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 307 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+..+..+...|++++|||..+.+|+++..||.+.+|||.
T Consensus 434 l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 434 LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 888888888899999999988899999999999999984
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=5e-21 Score=161.22 Aligned_cols=259 Identities=15% Similarity=0.192 Sum_probs=183.5
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v 95 (346)
-.++-++.+-+...+|+. ...+..+++|++.... ..-.....+|.+.|.+++|.|.++.++++ ||.|+.|.|
T Consensus 100 ~nAifDl~wapge~~lVs----asGDsT~r~Wdvk~s~-l~G~~~~~GH~~SvkS~cf~~~n~~vF~t---GgRDg~ill 171 (720)
T KOG0321|consen 100 KNAIFDLKWAPGESLLVS----ASGDSTIRPWDVKTSR-LVGGRLNLGHTGSVKSECFMPTNPAVFCT---GGRDGEILL 171 (720)
T ss_pred cceeEeeccCCCceeEEE----ccCCceeeeeeeccce-eecceeecccccccchhhhccCCCcceee---ccCCCcEEE
Confidence 345666666664444443 2467789999988753 12223578999999999999999999988 799999999
Q ss_pred EecCcccC---------------C---CCCccceeeeeeeccCCceEE---EEeecCCCCcEEEE-ecCCeEEEEEcCCC
Q 019059 96 WQIPELYG---------------Q---LNSPQLERIAALDAHVGKINC---VLWWSSGRHDKLVS-IDEENIFLWSLDCS 153 (346)
Q Consensus 96 w~~~~~~~---------------~---~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~-~~d~~i~vwd~~~~ 153 (346)
||+..... . ...+..+.+.....+...|.. +.+..|... ++++ ..|+.|+|||+++.
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeeccc
Confidence 99974321 1 111111222233455555665 556666664 5554 44999999999976
Q ss_pred CCCceeeecc------cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc--cceeeccc-----eeEEEeCCCC
Q 019059 154 NKNAQVQSKQ------SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK--TNSIEHAH-----VRNVDYDTKK 220 (346)
Q Consensus 154 ~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~-----v~~~~~~~~~ 220 (346)
.......... .......+.++.....|.+|++.+.|+.|++|++.+... +..+. ++ -..-..+|++
T Consensus 251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDD 329 (720)
T ss_pred ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCC
Confidence 5433322211 111133567777777889999999999999999986542 22222 22 2223457899
Q ss_pred CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059 221 KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (346)
Q Consensus 221 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~ 285 (346)
. .+++|+.|...++|.+.+...+...+.+|...|++++|.|..-.-++++++|..++||++...
T Consensus 330 ~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 330 C-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred c-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 8 899999999999999999888888999999999999999876566888899999999999653
No 166
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.5e-22 Score=157.05 Aligned_cols=277 Identities=13% Similarity=0.135 Sum_probs=194.7
Q ss_pred CeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCC
Q 019059 54 TELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSG 132 (346)
Q Consensus 54 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 132 (346)
.++..+.+.+|.+.|+++.|+.+++.|++ ||.|..++||+++...... ..+++.... .|.+.|.|++|...+
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~S----GGDD~~~~~W~~de~~~~k---~~KPI~~~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLAS----GGDDMHGRVWNVDELMVRK---TPKPIGVMEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEee----cCCcceeeeechHHHHhhc---CCCCceeccCccccceEEEEEccCC
Confidence 34455678899999999999999888887 5899999999997432111 224443332 356899999999877
Q ss_pred CCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeeccc-
Q 019059 133 RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH- 210 (346)
Q Consensus 133 ~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~- 210 (346)
+ .+++++.+++|...|+++.+...... .......|+.+..+|..+.+++.+.++.|.+||.+..+ ....+..+.
T Consensus 118 ~-~~~SG~~~~~VI~HDiEt~qsi~V~~---~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 118 R-FLYSGERWGTVIKHDIETKQSIYVAN---ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred e-eEecCCCcceeEeeecccceeeeeec---ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 7 47778889999999999765433322 22334489999999999999999999999999999766 333222222
Q ss_pred ---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec--------------------------------------
Q 019059 211 ---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-------------------------------------- 249 (346)
Q Consensus 211 ---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------------------------- 249 (346)
...+.|+|..+.+|++.+..+-+.+||.|....++....
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 889999999998999999999999999986542221110
Q ss_pred ----------CCC-------cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC--Cccc-ccCCc-ccccccccc
Q 019059 250 ----------GHT-------HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL--PSES-LVESP-NQRANSLLN 308 (346)
Q Consensus 250 ----------~~~-------~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~-~~~~~-~~~~~~~~~ 308 (346)
.|. ..+.+++|..+ .-+++|+.+-.|++|.+......-- .... ....+ .....+.+.
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 011 11233444433 3588999999999998875321100 0000 00001 011234566
Q ss_pred ccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 309 SYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 309 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
.+.+|.+.+..+.|+|... +|++.+-+..+++|.-
T Consensus 352 VLrGHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 352 VLRGHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSD 386 (609)
T ss_pred EEecccccccceeecCCcc-eEeccchhhheecccc
Confidence 7889999999999999885 9999999999999974
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=2.2e-20 Score=162.19 Aligned_cols=275 Identities=15% Similarity=0.222 Sum_probs=197.0
Q ss_pred eEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc
Q 019059 43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK 122 (346)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (346)
.+++|++.+... ......-+.+|.++.|+|..+.++++ |..+|.|.+||+..... .+..........|..+
T Consensus 223 ~~~vW~~~~p~~---Pe~~~~~~s~v~~~~f~p~~p~ll~g---G~y~GqV~lWD~~~~~~---~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 223 VLLVWSLKNPNT---PELVLESPSEVTCLKFCPFDPNLLAG---GCYNGQVVLWDLRKGSD---TPPSGLSALEVSHSEP 293 (555)
T ss_pred eEEEEecCCCCC---ceEEEecCCceeEEEeccCCcceEEe---eccCceEEEEEccCCCC---CCCcccccccccCCcC
Confidence 678888877632 23344567899999999999999997 68899999999983211 1111112233468899
Q ss_pred eEEEEeecCCCC-cEEEEecCCeEEEEEcCCCCCCceeeecccC-------CCceeeEEEEeCCCCC-cEEEEecCCeEE
Q 019059 123 INCVLWWSSGRH-DKLVSIDEENIFLWSLDCSNKNAQVQSKQSS-------GMLHYLSGGAWDPHDV-NAVAATCESSVQ 193 (346)
Q Consensus 123 i~~~~~~~~~~~-~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 193 (346)
+..+.|..+-.. -+++++.||.|..|+++.-..+......... .....++.++|.+... .+++|+.+|.|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 999999754321 2677777999999998754332222221111 1223678899988654 467777889888
Q ss_pred EEEccCCCccc----e---eeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCC
Q 019059 194 FWDLRSMGKTN----S---IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE 263 (346)
Q Consensus 194 i~d~~~~~~~~----~---~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~ 263 (346)
.-+....+.-. . ....| |+++.++|.+..++++++ |.+++||.......|+..+..+...+++++|||.
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 74444322211 1 11122 999999999985666665 8999999988446688888888888999999999
Q ss_pred CCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 264 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
.+..|+++..||.|.|||+.. ....++....-+....+.+.|++.|+ +|+.|...|++.+|+
T Consensus 453 rpavF~~~d~~G~l~iWDLl~-----------------~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQ-----------------DDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILK 514 (555)
T ss_pred CceEEEEEcCCCceehhhhhc-----------------cccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEE
Confidence 989999999999999999986 12344444444456678889999897 999999999999999
Q ss_pred ec
Q 019059 344 LE 345 (346)
Q Consensus 344 ~~ 345 (346)
+.
T Consensus 515 l~ 516 (555)
T KOG1587|consen 515 LS 516 (555)
T ss_pred cC
Confidence 84
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5.2e-22 Score=164.85 Aligned_cols=257 Identities=20% Similarity=0.238 Sum_probs=196.0
Q ss_pred eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 139 (346)
++..|.+.|.+++|.|..+.++++ +.|+++++|++.. .........+++.++++|.++|.|+++.+.+.+ .+++
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~----sed~~lk~WnLqk-~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~-~ysg 362 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITA----SEDGTLKLWNLQK-AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH-CYSG 362 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEe----ccccchhhhhhcc-cCCccccceeeeEEEecccCceEEEEecCCceE-EEee
Confidence 667899999999999999999886 7999999999953 223334467899999999999999999999996 8888
Q ss_pred ecCCeEEEEEcCCCCCC-----ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee--ccc--
Q 019059 140 IDEENIFLWSLDCSNKN-----AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAH-- 210 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~-- 210 (346)
+.||.|+.|++...... .........||...+..+++++....|++++.||+++.|+.....+ .++. ..+
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 89999999977632211 1223344578899999999999999999999999999999887666 2222 122
Q ss_pred eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-------CCcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG-------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS 283 (346)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~ 283 (346)
..++++-....-..++...-+.-.++++.. ...+..+.. -...+..+.++|.+ .+.+++..|+.|+++|..
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNK 519 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccccc
Confidence 777777655431222222223333333332 112222221 12346778899999 899999999999999999
Q ss_pred CCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+ +.+++....|...++++++.|+|. +|++++.|+.+++|.++
T Consensus 520 ~-------------------~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 520 T-------------------GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLD 561 (577)
T ss_pred c-------------------cccchheeeccceecceeecCCCc-eEEeecCCceeehhhcc
Confidence 9 899999999999999999999998 89999999999999874
No 169
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=167.21 Aligned_cols=245 Identities=13% Similarity=0.192 Sum_probs=194.1
Q ss_pred eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCC--CCceEEEEeecCCcceEEEE
Q 019059 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF--DQRIFSTVFSTGESYGAAIW 96 (346)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~~~~~d~~i~vw 96 (346)
+.++..+|+++.++.|. ..+.++++++..... ...+..|..+|.|+.|+.. +..|++. ++.|+.|+|+
T Consensus 462 ~R~~~vSp~gqhLAsGD----r~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLAS---asrdRlIHV~ 531 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGD----RGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLAS---ASRDRLIHVY 531 (1080)
T ss_pred eEEEEECCCcceecccC----ccCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhh---ccCCceEEEE
Confidence 34566788888888874 457889998887542 2445689999999999852 3445554 4899999999
Q ss_pred ecCcccCCCCCccceeeeeeeccCCceEEEEeecCC-CCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059 97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG-RHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (346)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (346)
|+.. +..++.++.+|...|+++.|...| +..+++++.|..|.+--..+......+...........++.++
T Consensus 532 Dv~r--------ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 532 DVKR--------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA 603 (1080)
T ss_pred eccc--------ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence 9974 567888999999999999998776 2236777778776543333222122222222222344789999
Q ss_pred eCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC
Q 019059 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG 250 (346)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 250 (346)
..|..+++++++.|..|+|||+.+++..+.|+..+ .-.+...|.|. ++++.+.|+++.++|.-+ +.++.++.+
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~s-gEcvA~m~G 681 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVS-GECVAQMTG 681 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEecc-chhhhhhcC
Confidence 99999999999999999999999999999998444 77888999998 899999999999999997 678999999
Q ss_pred CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 251 ~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
|...|+.+.|.+|- +.|++.+.||.|.||.+..
T Consensus 682 HsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchheeeeeecccc-hhheeecCCceEEEEECch
Confidence 99999999999999 9999999999999998764
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3.2e-21 Score=150.19 Aligned_cols=265 Identities=15% Similarity=0.174 Sum_probs=191.0
Q ss_pred CCeEEEEEecCCCC--eEEEeeeeccccceEEeeecCC----CCceEEEEeecCCcceEEEEecCcccCCCCCccceeee
Q 019059 41 ENEVHLLRLSSGGT--ELICEGLFSHPNEIWDLSSCPF----DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA 114 (346)
Q Consensus 41 ~~~i~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~----~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 114 (346)
.+.+.++....+.. .+....-..|+..-.-++|+=+ ++++++ +|.-|.|+|.|+. +.+...
T Consensus 63 ~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~----~G~~GvIrVid~~---------~~~~~~ 129 (385)
T KOG1034|consen 63 GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA----GGYLGVIRVIDVV---------SGQCSK 129 (385)
T ss_pred CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe----ecceeEEEEEecc---------hhhhcc
Confidence 46677777776652 2221222246677778888643 334554 4789999999998 788888
Q ss_pred eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEE
Q 019059 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF 194 (346)
Q Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 194 (346)
.+.+|...|+.+.+.|+..+++++++.|..|++|++++... ........+|...|.++.|++++..+++++.|.+|.+
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~ 207 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL 207 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence 99999999999999999999888899999999999997653 3445566789999999999999999999999999999
Q ss_pred EEccCCCccceee---------------------------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059 195 WDLRSMGKTNSIE---------------------------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (346)
Q Consensus 195 ~d~~~~~~~~~~~---------------------------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (346)
|++...+....+. .-| |-|+.|- |+ ++++-+-++.|..|-..+....
T Consensus 208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~ 284 (385)
T KOG1034|consen 208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEES 284 (385)
T ss_pred EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh-heeecccCceEEEEecchhhhh
Confidence 9998433111110 001 4444443 44 7788788889999987322222
Q ss_pred -------------eeeecCCCcceEEE--EeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc--c
Q 019059 245 -------------IQELPGHTHWTWAV--CCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL--L 307 (346)
Q Consensus 245 -------------~~~~~~~~~~v~~v--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~ 307 (346)
+.++.-....|.-+ +|.|.+ ..||.|...|.|.+||++. .++ .
T Consensus 285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~-------------------~ep~~~ 344 (385)
T KOG1034|consen 285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDN-------------------NEPPKC 344 (385)
T ss_pred hhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCC-------------------CCCccC
Confidence 12222223344444 456777 8999999999999999997 222 1
Q ss_pred cccc--cccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 308 NSYS--DYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 308 ~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
.++. .....|...+|+.++. +|+...+|++|--||-
T Consensus 345 ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence 1221 2235699999999997 8888999999999984
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=5.8e-21 Score=161.96 Aligned_cols=272 Identities=14% Similarity=0.214 Sum_probs=207.6
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~v 95 (346)
..++..+.+.|++..+++. .++.+++++.++.+ ....+.+|.+.|.+++|+.+|+.+++ |+.|..|.+
T Consensus 12 ~hci~d~afkPDGsqL~lA-----Ag~rlliyD~ndG~---llqtLKgHKDtVycVAys~dGkrFAS----G~aDK~VI~ 79 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILA-----AGSRLLVYDTSDGT---LLQPLKGHKDTVYCVAYAKDGKRFAS----GSADKSVII 79 (1081)
T ss_pred ccchheeEECCCCceEEEe-----cCCEEEEEeCCCcc---cccccccccceEEEEEEccCCceecc----CCCceeEEE
Confidence 3478888899999988875 46788888887754 34677899999999999999999888 589999999
Q ss_pred EecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE
Q 019059 96 WQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA 175 (346)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (346)
|+-. .+-+..+ .|.+.|.|+.|+|-... +++++ =...-+|..+... ..+.. ....+.+.+
T Consensus 80 W~~k----------lEG~LkY-SH~D~IQCMsFNP~~h~-LasCs-LsdFglWS~~qK~-V~K~k------ss~R~~~Cs 139 (1081)
T KOG1538|consen 80 WTSK----------LEGILKY-SHNDAIQCMSFNPITHQ-LASCS-LSDFGLWSPEQKS-VSKHK------SSSRIICCS 139 (1081)
T ss_pred eccc----------ccceeee-ccCCeeeEeecCchHHH-hhhcc-hhhccccChhhhh-HHhhh------hheeEEEee
Confidence 9854 3333334 79999999999999884 44443 3456678876322 11111 233789999
Q ss_pred eCCCCCcEEEEecCCeEEEEEccCCCccceeec-cc----eeEEEeCCCCC----cEEEEecCCCeEEEEEcccCCccee
Q 019059 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AH----VRNVDYDTKKK----HLLVTAADESGIHLWDLRMLKAPIQ 246 (346)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~----v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~ 246 (346)
|..||++++.|-.+|+|.+-+- ++++...+.. +. |.+++|+|... ..+++.....++.++.+. ++.+.
T Consensus 140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Ig 216 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIG 216 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeec
Confidence 9999999999999999998754 4554444443 21 99999998743 256667777777777765 33343
Q ss_pred eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC
Q 019059 247 ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE 326 (346)
Q Consensus 247 ~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 326 (346)
.-+.-.-...|+.+.++| .++..|+.|+.+++|-.. +-.+.++.....+|+.+...|++
T Consensus 217 k~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~--------------------GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRD--------------------GVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred ccccCCCCchhheeccCC-cEEEEccCCCceEEEeec--------------------CeEEeeccccceeEEEEEEccCC
Confidence 333344566889999999 999999999999999765 57788888888999999999999
Q ss_pred CcEEEEeecCCeEEEeee
Q 019059 327 PWIFASLSYDGRVRNHML 344 (346)
Q Consensus 327 ~~~l~s~~~d~~v~vw~~ 344 (346)
+ .++.|..||+|..|++
T Consensus 276 Q-~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 276 Q-YVVVGCQDGTIACYNL 292 (1081)
T ss_pred c-eEEEEEccCeeehhhh
Confidence 8 8899999999998876
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=1e-20 Score=150.78 Aligned_cols=231 Identities=16% Similarity=0.277 Sum_probs=177.6
Q ss_pred CCCeEEEEEecCCCC-eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec
Q 019059 40 EENEVHLLRLSSGGT-ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA 118 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 118 (346)
..+...++.+...++ ......+.+|.++|.+++|+|.+...+++ |++|.+|.||.+++... ..+-.+++..+.+
T Consensus 55 gGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIAS---gSeD~~v~vW~IPe~~l--~~~ltepvv~L~g 129 (472)
T KOG0303|consen 55 GGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIAS---GSEDTKVMVWQIPENGL--TRDLTEPVVELYG 129 (472)
T ss_pred CCcceeecccccccccCCCCCCccCccccccccccCccCCceeec---CCCCceEEEEECCCccc--ccCcccceEEEee
Confidence 344555555544321 11224567999999999999998888887 69999999999985432 2223477888999
Q ss_pred cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059 119 HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (346)
Q Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (346)
|...|--+.|+|....++++++.|..|.+|++.+++....+. |...|+++.|+.+|..+++++.|..|+|||.+
T Consensus 130 H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 130 HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR 203 (472)
T ss_pred cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC------CCCeEEEEEeccCCceeeeecccceeEEEcCC
Confidence 999999999999999888888889999999999887554432 67799999999999999999999999999999
Q ss_pred CCCccceeeccc----eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCCCcEEE-
Q 019059 199 SMGKTNSIEHAH----VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYDGFIL- 269 (346)
Q Consensus 199 ~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~- 269 (346)
+++.+..-. +| ...+.|-.++. ++.+|- .+..+-+||..+...++.... ...+.|.---|.|+. ..++
T Consensus 204 ~~~~v~e~~-~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt-~ivYl 280 (472)
T KOG0303|consen 204 RGTVVSEGV-AHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT-SIVYL 280 (472)
T ss_pred CCcEeeecc-cccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC-CEEEE
Confidence 999877663 44 66677777886 555543 467899999888776643322 245667777788888 6665
Q ss_pred EecCCCeEEEEecCC
Q 019059 270 SAGTDSTVNLWLVST 284 (346)
Q Consensus 270 s~~~d~~i~iwd~~~ 284 (346)
+|-.|+.||-|.+..
T Consensus 281 ~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 281 CGKGDSSIRYFEITN 295 (472)
T ss_pred EecCCcceEEEEecC
Confidence 555699999999876
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=2.1e-20 Score=149.02 Aligned_cols=245 Identities=10% Similarity=0.175 Sum_probs=175.9
Q ss_pred CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC
Q 019059 76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK 155 (346)
Q Consensus 76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 155 (346)
-++.+++....++..|...|--+.+... --...-.+.+|+++|..++|+|.+.+.++++++|.+|.||.+..+..
T Consensus 42 vNPkfiAvi~easgGgaf~ViPl~k~Gr-----~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l 116 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGAFLVIPLVKTGR-----MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL 116 (472)
T ss_pred cCCceEEEEEecCCCcceeecccccccc-----cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccc
Confidence 3445555544445555666655542110 01112245799999999999999998677779999999999987654
Q ss_pred Cceee--ecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC
Q 019059 156 NAQVQ--SKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES 231 (346)
Q Consensus 156 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg 231 (346)
...+. .....+|...|-.++|+|.... |++++.|.+|.+|++.+++.+.++.+.. |.++.|+.+|. ++++.+.|+
T Consensus 117 ~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDK 195 (472)
T KOG0303|consen 117 TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDK 195 (472)
T ss_pred ccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccc
Confidence 44333 3346789999999999997654 7778889999999999999888887444 99999999998 999999999
Q ss_pred eEEEEEcccCCcceeeecCCCc-ceEEEEeCCCCCcEEEEec---CCCeEEEEecCCCCCCCCCcccccCCccccccccc
Q 019059 232 GIHLWDLRMLKAPIQELPGHTH-WTWAVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307 (346)
Q Consensus 232 ~i~i~d~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (346)
.|+|||.|. +..+..-.+|.+ .-..+.|-.++ .++-||- .+.++.+||...... +-..
T Consensus 196 kvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~e----------------P~~~ 257 (472)
T KOG0303|consen 196 KVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEE----------------PIAL 257 (472)
T ss_pred eeEEEcCCC-CcEeeecccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccC----------------ccee
Confidence 999999998 556776667764 33455677888 6444442 367899999876210 1112
Q ss_pred cccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 308 NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 308 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
..+.. ++.|.---|.|+.+-+.+.|-.|+.||.|.++
T Consensus 258 ~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 258 QELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred EEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 23333 33466566888887556677789999999875
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=1.2e-20 Score=142.85 Aligned_cols=246 Identities=15% Similarity=0.150 Sum_probs=177.5
Q ss_pred eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEE
Q 019059 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 139 (346)
+.+|.+.|+++.|..+++ |++ |...|.|.+|++. ....+..++ .+...|+.+.-.|++. +.+-
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~s----g~~~G~V~~w~lq---------t~r~~~~~r~~g~~~it~lq~~p~d~--l~tq 73 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMS----GLSVGIVKMWVLQ---------TERDLPLIRLFGRLFITNLQSIPNDS--LDTQ 73 (323)
T ss_pred eccccchheehhhccchh-hhc----ccccceEEEEEee---------cCccchhhhhhccceeeceeecCCcc--hhhc
Confidence 348999999999998765 666 4688999999998 455555666 5677899999888866 6666
Q ss_pred ecCCeEEEEEcCCCCCC--------------cee----------ee------------------------cccCCCceee
Q 019059 140 IDEENIFLWSLDCSNKN--------------AQV----------QS------------------------KQSSGMLHYL 171 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~~--------------~~~----------~~------------------------~~~~~~~~~v 171 (346)
+.|..+.+|++.-+... ..+ .. ....+....+
T Consensus 74 gRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 74 GRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred CCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 88999999998752100 000 00 0000111233
Q ss_pred EEEEeCC-CCC-c-EEEEecCCeEEEEEccCCCccceeec---------cc---eeEEEeCCCCCcEEEEecCCCeEEEE
Q 019059 172 SGGAWDP-HDV-N-AVAATCESSVQFWDLRSMGKTNSIEH---------AH---VRNVDYDTKKKHLLVTAADESGIHLW 236 (346)
Q Consensus 172 ~~~~~~~-~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~---v~~~~~~~~~~~~l~~~~~dg~i~i~ 236 (346)
.+..+.- ++. . +++|-.+|.+.+||+.++.....++. .| +.++.+.+.-. .=++|+.+..+..|
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMY 232 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceee
Confidence 4433321 222 2 44555799999999999754433321 22 88999987655 45667777788899
Q ss_pred EcccCCc--ce-eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc
Q 019059 237 DLRMLKA--PI-QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY 313 (346)
Q Consensus 237 d~~~~~~--~~-~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (346)
.+..... ++ ..+....-.|..+..-||+ +.+|+++.|+.||||..++ ..++..++-|
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrt-------------------l~pLAVLkyH 292 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRT-------------------LNPLAVLKYH 292 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEecc-------------------CCchhhhhhh
Confidence 8875321 11 1222234578889999999 9999999999999999999 8999999999
Q ss_pred cceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 314 EDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 314 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
+..|.+++|+|+.+ ++|+++.|++|.+|++
T Consensus 293 sagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 99999999999976 9999999999999997
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=2.9e-20 Score=144.93 Aligned_cols=224 Identities=14% Similarity=0.256 Sum_probs=161.5
Q ss_pred CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee---e
Q 019059 41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL---D 117 (346)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~---~ 117 (346)
-|.|+++++... .....+.+|...|+.+.+.|+...|+.+ ++.|..|++|++. +..++..+ .
T Consensus 114 ~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls---~SkD~svRlwnI~---------~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 114 LGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLS---ASKDHSVRLWNIQ---------TDVCVAVFGGVE 178 (385)
T ss_pred eeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEE---ecCCceEEEEecc---------CCeEEEEecccc
Confidence 345666655543 3557788999999999999999888887 4899999999999 66777665 6
Q ss_pred ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee-----------------------cccCCCceeeEEE
Q 019059 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-----------------------KQSSGMLHYLSGG 174 (346)
Q Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-----------------------~~~~~~~~~v~~~ 174 (346)
+|.+.|.+++|+++|.+ ++++|.|.++++|++...+-...+.. ....-|...|-++
T Consensus 179 gHrdeVLSvD~~~~gd~-i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 179 GHRDEVLSVDFSLDGDR-IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred cccCcEEEEEEcCCCCe-eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence 79999999999999995 77778899999999984321111000 0112355566667
Q ss_pred EeCCCCCcEEEEecCCeEEEEEc-cCCCcccee-------------eccc--ee--EEEeCCCCCcEEEEecCCCeEEEE
Q 019059 175 AWDPHDVNAVAATCESSVQFWDL-RSMGKTNSI-------------EHAH--VR--NVDYDTKKKHLLVTAADESGIHLW 236 (346)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-------------~~~~--v~--~~~~~~~~~~~l~~~~~dg~i~i~ 236 (346)
.|- |.++++-+.++.|..|.. +-++....+ .-.. +. -.+|+|-.+ +|+.|...|.|.+|
T Consensus 258 rw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 258 RWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVW 334 (385)
T ss_pred HHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEE
Confidence 774 578888888999999987 222221111 1111 33 345677777 89999999999999
Q ss_pred EcccCCcc-eeeec--CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 237 DLRMLKAP-IQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 237 d~~~~~~~-~~~~~--~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
|+++...+ ..++. .....|...+|+.++ .+|+...+|++|.-||..+
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEeec
Confidence 99975432 22222 123578899999999 8999999999999998653
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.1e-19 Score=133.79 Aligned_cols=243 Identities=14% Similarity=0.206 Sum_probs=172.1
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccc-eeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL-ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 144 (346)
..|.+-+|+|.+++|+++ +.+|.|.+..+.........+++ .++...++|+++|+.++|..+ ++++++ ||.
T Consensus 11 ~tvf~qa~sp~~~~l~ag----n~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~ 82 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAG----NLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGL 82 (325)
T ss_pred HHHHHHhhCCcceEEEEe----cCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeecc-Cce
Confidence 346677899999998884 79999999999866544444444 345556899999999999833 355554 799
Q ss_pred EEEEEcCCCCC------Cceeeeccc--CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeE
Q 019059 145 IFLWSLDCSNK------NAQVQSKQS--SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRN 213 (346)
Q Consensus 145 i~vwd~~~~~~------~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~ 213 (346)
|+=|..+.... ..+...+.. ......|+++...|..+.++.++.|+.++-||+++|+..+++. +| +.+
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~ 161 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHS 161 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeee
Confidence 99998764322 111111111 1123368899999999999999999999999999999888887 77 999
Q ss_pred EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC---------C-CcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059 214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---------H-THWTWAVCCNPEYDGFILSAGTDSTVNLWLVS 283 (346)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~-~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~ 283 (346)
++--.... -+++|++||++|+||.++ .+.+..+.. | ..+|.+++-+. .++++|+. ..+.+|.++
T Consensus 162 vv~R~~~~-qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGgG-p~lslwhLr 235 (325)
T KOG0649|consen 162 VVGRNANG-QILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGGG-PKLSLWHLR 235 (325)
T ss_pred eeecccCc-ceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEeccC---ceEEecCC-CceeEEecc
Confidence 88844443 589999999999999998 445555542 1 23466666544 56776664 469999999
Q ss_pred CCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
. .++...+.- ...+..+.|..+ .+++++..+.|.-|.+.|
T Consensus 236 s-------------------se~t~vfpi-pa~v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 236 S-------------------SESTCVFPI-PARVHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred C-------------------CCceEEEec-ccceeEeeeecc---eEEEeccccceeeeeecc
Confidence 8 555544432 334777888754 567778777888887654
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=9.5e-20 Score=151.58 Aligned_cols=258 Identities=14% Similarity=0.194 Sum_probs=183.3
Q ss_pred cccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecC-----CCCeEEEeeeeccccceEEeeecCCCCceEEEEe
Q 019059 11 GLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSS-----GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 85 (346)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 85 (346)
.+..+..++..+.+.+....++.+ ..++.+.+|++.. .......-++.+|.++|.|+++.+++.++++
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~----sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys--- 361 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITA----SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS--- 361 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEe----ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe---
Confidence 334444566667777777777665 4678899999932 2234445678999999999999999998888
Q ss_pred ecCCcceEEEEecCcccCCCC-CccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059 86 STGESYGAAIWQIPELYGQLN-SPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS 164 (346)
Q Consensus 86 ~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 164 (346)
||-||+|+.|+++......+ .........+.+|.+.|+.+++++...+ ++.++.||+++.|+...... ..+.....
T Consensus 362 -gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e 438 (577)
T KOG0642|consen 362 -GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKE 438 (577)
T ss_pred -eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccc
Confidence 58999999999873322211 1123455678899999999999998775 77777899999999875543 22221111
Q ss_pred CCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceeec---------cceeEEEeCCCCCcEEEEecCCCeEE
Q 019059 165 SGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEH---------AHVRNVDYDTKKKHLLVTAADESGIH 234 (346)
Q Consensus 165 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~ 234 (346)
.+ ....+.+-... .+.++...-+.-.++++.....+..+.. .++.-+.++|..+ +.+++..|+.|+
T Consensus 439 ~g---~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir 514 (577)
T KOG0642|consen 439 HG---YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIR 514 (577)
T ss_pred cC---CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCcee
Confidence 12 23444443322 2222322333333444444443333321 1188899999998 999999999999
Q ss_pred EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
++|..+ ..++.....|...++++++.|+| .+|++++.|+.+++|.+..
T Consensus 515 ~~dn~~-~~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 515 FFDNKT-GKILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred cccccc-cccchheeeccceecceeecCCC-ceEEeecCCceeehhhccc
Confidence 999987 66888899999999999999999 9999999999999999976
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=7.6e-19 Score=156.19 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=180.3
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc---CCceEEEEee-cCCCCcEEEEecC
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH---VGKINCVLWW-SSGRHDKLVSIDE 142 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~-~~~~~~~~~~~~d 142 (346)
+-..+.|+|-.+.++++ +..-.|+|||.+ ..+.+..+..+ ...|+.+.+- .+...++++++.|
T Consensus 1066 ~pk~~~~hpf~p~i~~a----d~r~~i~vwd~e---------~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAA----DDRERIRVWDWE---------KGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred CCceeeecCCCceeEEc----CCcceEEEEecc---------cCceeccccCCCCCCCccceeeeecccchhheeeeccC
Confidence 35568889988888886 445589999998 55565555443 4568888875 4455578888889
Q ss_pred CeEEEEEcCCCC-CCceeeecc------cCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---ee
Q 019059 143 ENIFLWSLDCSN-KNAQVQSKQ------SSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VR 212 (346)
Q Consensus 143 ~~i~vwd~~~~~-~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~ 212 (346)
|.|+||+--... ...++...- ..+....-.-+.|.....+|+++|.-..|+|||....+....+..+. ++
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence 999999855332 222222211 11111122345788878888888888899999999888887776444 88
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEEcccCCc--ceeeecCCCcc--eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKA--PIQELPGHTHW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 288 (346)
++.-+..+.+++++|..||.|++||.|.... .+...+.|... |..+.+.+.|-..|++|+.||.|++||++...
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-- 1290 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-- 1290 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--
Confidence 8877655544999999999999999986443 67778889877 99999999885569999999999999999810
Q ss_pred CCCcccccCCcccccccccccccccc--c-eeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 289 ELPSESLVESPNQRANSLLNSYSDYE--D-SVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
.+-..+...|. + ..+++..+++.+ ++|+|+. +.|+||++.|
T Consensus 1291 ---------------~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1291 ---------------KETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred ---------------ccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecCh
Confidence 11111222232 2 489999999997 8999998 9999999865
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=5.2e-17 Score=142.47 Aligned_cols=284 Identities=22% Similarity=0.376 Sum_probs=200.4
Q ss_pred EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeee-cCCCCceEEEEeecCCcceEEE
Q 019059 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSS-CPFDQRIFSTVFSTGESYGAAI 95 (346)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~~l~~~~~~~~~d~~i~v 95 (346)
.+..+........+..+. .++.+.+|+..... .....+..+. ..+..+.+ ++++..++... +..|+.+.+
T Consensus 67 ~i~~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~ 138 (466)
T COG2319 67 SITSIAFSPDGELLLSGS----SDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLAS--SSLDGTVKL 138 (466)
T ss_pred eEEEEEECCCCcEEEEec----CCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEecc--CCCCccEEE
Confidence 344444555555555443 56778888877754 1223333433 36777777 78777444432 345899999
Q ss_pred EecCcccCCCCCcc-ceeeeeeeccCCceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059 96 WQIPELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG 173 (346)
Q Consensus 96 w~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 173 (346)
|+.. . ......+..|...|..++|+|++.. +++++. ++.+++|++......... .+|...+.+
T Consensus 139 ~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~ 203 (466)
T COG2319 139 WDLS---------TPGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSS 203 (466)
T ss_pred EEec---------CCCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEee-----ccCCCceEE
Confidence 9997 4 5777788899999999999999983 555554 999999999863322222 226678999
Q ss_pred EEeCCCCCcEEEE-ecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC
Q 019059 174 GAWDPHDVNAVAA-TCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG 250 (346)
Q Consensus 174 ~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 250 (346)
++|+|++..++++ +.|+.|++||...+.........| .....|+|++. .+++++.|+.+++|+++.....+..+..
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSG 282 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEec
Confidence 9999998844444 789999999988666665222244 22337999996 7889999999999999975543444467
Q ss_pred CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc--cccceeeEEEeCCCCCc
Q 019059 251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS--DYEDSVYGLAWSSREPW 328 (346)
Q Consensus 251 ~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~ 328 (346)
|...+.++.|+|++ ..+++++.|+.+++||... ........ .|...+..+.|.+++..
T Consensus 283 ~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (466)
T COG2319 283 HSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLET-------------------GKLLSSLTLKGHEGPVSSLSFSPDGSL 342 (466)
T ss_pred CCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCC-------------------CceEEEeeecccCCceEEEEECCCCCE
Confidence 88999999999988 7777788899999998887 44343333 67777899999433243
Q ss_pred EEEEeecCCeEEEeeec
Q 019059 329 IFASLSYDGRVRNHMLE 345 (346)
Q Consensus 329 ~l~s~~~d~~v~vw~~~ 345 (346)
++..+..|+.+++|++.
T Consensus 343 ~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 343 LVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EEEeecCCCcEEeeecC
Confidence 44444688999999875
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=1.9e-17 Score=131.36 Aligned_cols=234 Identities=17% Similarity=0.177 Sum_probs=168.5
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe-cCCe
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-DEEN 144 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~d~~ 144 (346)
..++.+.|..+...|.. |+.| ..++++.+ +.............|.-+-|+.+ .+++++- .-+.
T Consensus 6 ~ti~~~~~Nqd~~~lsv----Gs~~-Gyk~~~~~---------~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~ 69 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSV----GSKD-GYKIFSCS---------PFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRK 69 (391)
T ss_pred cceeeeeeccceeEEEc----cCCC-ceeEEecC---------chHHhhcccCCCeEEEEeecccc--eeEEEecCCCce
Confidence 45666778876654444 3455 46888876 22222222233445666777654 1233332 2356
Q ss_pred EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc--c---eeEEEeCCC
Q 019059 145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--H---VRNVDYDTK 219 (346)
Q Consensus 145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~---v~~~~~~~~ 219 (346)
+++++.........+... .+|.++.++. +.|++.-.+ .|+|||+++.+.+.++..- + +.+++.++.
T Consensus 70 Lkv~~~Kk~~~ICe~~fp------t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~ 140 (391)
T KOG2110|consen 70 LKVVHFKKKTTICEIFFP------TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA 140 (391)
T ss_pred EEEEEcccCceEEEEecC------CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCC
Confidence 889998866554444432 3899999975 445555544 4999999999998887643 3 677777777
Q ss_pred CCcEEEEec-CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC-eEEEEecCCCCCCCCCcccccC
Q 019059 220 KKHLLVTAA-DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-TVNLWLVSTSNHDELPSESLVE 297 (346)
Q Consensus 220 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~ 297 (346)
+.++.+-++ ..|.|.+||..+ -+++..+..|.+.+.+++|+++| .+|||+|+.| .|||+.+..
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~------------- 205 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPE------------- 205 (391)
T ss_pred CceEEecCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCC-------------
Confidence 764444344 358999999998 45889999999999999999999 9999999999 589999998
Q ss_pred Ccccccccccccccccc--ceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 298 SPNQRANSLLNSYSDYE--DSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 298 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
++.+..+.... ..|.+++|+|+++ +|++.|..++|++|.|++
T Consensus 206 ------G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 206 ------GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred ------ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 88888776432 3589999999998 899999999999999874
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=4.6e-18 Score=132.38 Aligned_cols=204 Identities=13% Similarity=0.176 Sum_probs=159.6
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCcc-ceeeeeeeccCCceEEEEeecCCCCcEEEEecC
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDE 142 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 142 (346)
-..+|+|.+|+++...++.+ -+...|.||.... .+ .++.+++..|...|++++|+|..++ +++++.|
T Consensus 9 ~~~pitchAwn~drt~iAv~----~~~~evhiy~~~~-------~~~w~~~htls~Hd~~vtgvdWap~snr-Ivtcs~d 76 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVS----PNNHEVHIYSMLG-------ADLWEPAHTLSEHDKIVTGVDWAPKSNR-IVTCSHD 76 (361)
T ss_pred ccCceeeeeecCCCceEEec----cCCceEEEEEecC-------CCCceeceehhhhCcceeEEeecCCCCc-eeEccCC
Confidence 34789999999999988886 4677899998762 23 6888999999999999999999986 8888899
Q ss_pred CeEEEEEcCCCCCC-ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc---cceeeccc---eeEEE
Q 019059 143 ENIFLWSLDCSNKN-AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK---TNSIEHAH---VRNVD 215 (346)
Q Consensus 143 ~~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~---v~~~~ 215 (346)
..-++|....+... ..+... .+....+++.|+|.++.+++++....|.||-++.... .+.+..+. |++++
T Consensus 77 rnayVw~~~~~~~WkptlvLl---RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 77 RNAYVWTQPSGGTWKPTLVLL---RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred CCccccccCCCCeeccceeEE---EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence 99999998443322 222222 2455899999999999999999999999998875432 12222222 99999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEccc-----C------------CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEE
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRM-----L------------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~-----~------------~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~ 278 (346)
|+|++- ++++|+.|+..++|..-- . +..+.++....+.+..+.|+|+| ..|+-.+.|..+.
T Consensus 154 WhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 154 WHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVS 231 (361)
T ss_pred ccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceE
Confidence 999997 999999999999996421 0 01233443456889999999999 9999999999999
Q ss_pred EEecCC
Q 019059 279 LWLVST 284 (346)
Q Consensus 279 iwd~~~ 284 (346)
+-|...
T Consensus 232 ~~da~~ 237 (361)
T KOG1523|consen 232 FVDAAG 237 (361)
T ss_pred EeecCC
Confidence 999876
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=2.6e-17 Score=144.42 Aligned_cols=244 Identities=23% Similarity=0.371 Sum_probs=186.4
Q ss_pred eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccce-eeeeeeccC-CceEEEEe-ecCCCCcE
Q 019059 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLE-RIAALDAHV-GKINCVLW-WSSGRHDK 136 (346)
Q Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~-~~i~~~~~-~~~~~~~~ 136 (346)
....|...+..+.+.+.+..++.. +.|+.+.+|+.. ... ....+..+. ..+..+.+ ++++...+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~----~~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSG----SSDGTIKLWDLD---------NGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEe----cCCCcEEEEEcC---------CCceeEEEEeccCCCceeeEEEECCCcceEE
Confidence 456789999999999999888875 579999999987 232 555555533 36777777 77776334
Q ss_pred EEEe-cCCeEEEEEcCC-CCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCeEEEEEccCCCccceeeccc---
Q 019059 137 LVSI-DEENIFLWSLDC-SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAH--- 210 (346)
Q Consensus 137 ~~~~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~--- 210 (346)
+..+ .|+.+.+|+... ...... ...|...+..++|+|++..+++++. ++.+++|++..+.....+. .|
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 200 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKLIRT-----LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDP 200 (466)
T ss_pred eccCCCCccEEEEEecCCCeEEEE-----EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCc
Confidence 4434 489999999986 221111 2345668889999999998888875 9999999999877776666 34
Q ss_pred eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee-eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCC
Q 019059 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDE 289 (346)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 289 (346)
+.+++|+|++..++++++.|+.|++||.+. ...+. .+..|.... ...|+|++ .++++++.|+.+++|+++.
T Consensus 201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~----- 272 (466)
T COG2319 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRS----- 272 (466)
T ss_pred eEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecC-----
Confidence 999999999873445558999999998884 44555 577888775 44899999 8999999999999999997
Q ss_pred CCcccccCCcccccccc-ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 290 LPSESLVESPNQRANSL-LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 290 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
... +..+.+|...|.++.|+|++. .+++++.|+.+++|+++
T Consensus 273 --------------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 273 --------------SSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLE 314 (466)
T ss_pred --------------CCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcC
Confidence 222 333367788899999999776 66668888889999865
No 183
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.3e-18 Score=143.51 Aligned_cols=201 Identities=15% Similarity=0.280 Sum_probs=158.8
Q ss_pred eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 139 (346)
....|...|..+.|+..|.+|++++-+ +....|.|+++. ......-|+...+.|.++.|+|...++++++
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~-~~~~~VliHQLS---------K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT 585 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPD-SGNKSVLIHQLS---------KRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT 585 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccC-CCcceEEEEecc---------cccccCchhhcCCceeEEEecCCCceEEEEe
Confidence 456788999999999999999988633 334578899988 3344445656678899999999999755555
Q ss_pred ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeeccc---eeEEE
Q 019059 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH---VRNVD 215 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~---v~~~~ 215 (346)
...|++||+.......++.. ....+..++.+|.|..|+.++.|+.+..+|+.-.. +.+++. -| +++++
T Consensus 586 --q~~vRiYdL~kqelvKkL~t-----g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr-~H~~avr~Va 657 (733)
T KOG0650|consen 586 --QRSVRIYDLSKQELVKKLLT-----GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR-LHEKAVRSVA 657 (733)
T ss_pred --ccceEEEehhHHHHHHHHhc-----CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh-hhhhhhhhhh
Confidence 58999999986544444433 23478999999999999999999999999998664 444444 44 99999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccC--------CcceeeecCCCcc----eEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRML--------KAPIQELPGHTHW----TWAVCCNPEYDGFILSAGTDSTVNLW 280 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~----v~~v~~~~~~~~~l~s~~~d~~i~iw 280 (346)
|++.-+ ++++|+.||++.||.-.-. -.|+..+.+|... |..+.|+|.. .+|++++.||+|++|
T Consensus 658 ~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 658 FHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADGTIRLF 732 (733)
T ss_pred hccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC-ceEEecCCCceEEee
Confidence 999998 9999999999998853211 1266778888765 8899999999 899999999999998
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=8.8e-18 Score=130.81 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=171.1
Q ss_pred eeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEE
Q 019059 116 LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFW 195 (346)
Q Consensus 116 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 195 (346)
+..-..+|+|.+|++|.+. ++.+.....|.||.....+.... ......|...++++.|+|..+.|++++.|..-++|
T Consensus 6 ~~~~~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~~--~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWEP--AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCce-EEeccCCceEEEEEecCCCCcee--ceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 3334678999999999995 56666678999999876542222 23345677899999999999999999999999999
Q ss_pred EccC-CC--ccceeecc-c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc---ceeeecCCCcceEEEEeCCCCCcE
Q 019059 196 DLRS-MG--KTNSIEHA-H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA---PIQELPGHTHWTWAVCCNPEYDGF 267 (346)
Q Consensus 196 d~~~-~~--~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~ 267 (346)
.... ++ +...+..- . .+++.|+|..+ .|++|+.-..|.+|-++.... ..+.-+.+...|+++.|+|++ -+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VL 160 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VL 160 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ce
Confidence 9943 33 22222211 2 99999999997 999999999999998875332 112334567889999999999 99
Q ss_pred EEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 268 ILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 268 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
|++|+.|+..||+..-- +.-++......+....+.++++.++....++|..+.|+|+|. .|+-.+.|..+.+-|-.
T Consensus 161 laaGs~D~k~rVfSayI-K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYI-KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAA 236 (361)
T ss_pred ecccccCcceeEEEEee-eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecC
Confidence 99999999999998765 233333445555556667888888877778999999999998 89999999999887643
No 185
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=1.3e-18 Score=147.17 Aligned_cols=244 Identities=15% Similarity=0.183 Sum_probs=170.3
Q ss_pred cCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC
Q 019059 74 CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS 153 (346)
Q Consensus 74 ~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~ 153 (346)
+.+..++++-. .|..|.|-||++.++.. -+.+ .+-.+ .....|+.+.|.|-...-++++++||.|++|.+..+
T Consensus 588 can~~rvAVPL--~g~gG~iai~el~~PGr---LPDg-v~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 588 CANNKRVAVPL--AGSGGVIAIYELNEPGR---LPDG-VMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred eeccceEEEEe--cCCCceEEEEEcCCCCC---CCcc-ccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 33344444432 46678999999984211 1111 11222 245679999999987776888899999999999865
Q ss_pred CCCcee--eecccCCCceeeEEEEeCCCC-CcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEe
Q 019059 154 NKNAQV--QSKQSSGMLHYLSGGAWDPHD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTA 227 (346)
Q Consensus 154 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~ 227 (346)
...... .......|...|+++.|+|-. ..|++++.|.+|++||+++++....+. +| |.+++|+|+|+ .+++.
T Consensus 661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr-~~AtV 738 (1012)
T KOG1445|consen 661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGR-RIATV 738 (1012)
T ss_pred CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCc-ceeee
Confidence 433222 222345678899999999964 557788899999999999998877777 66 99999999999 99999
Q ss_pred cCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEecCCC----eEEEEecCCCCCCCCCcccccCCcccc
Q 019059 228 ADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDS----TVNLWLVSTSNHDELPSESLVESPNQR 302 (346)
Q Consensus 228 ~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (346)
+.||+|++|..++..+++..-.+.. ..--.|.|.-+| +++++.+.|. +|.+||.++..
T Consensus 739 cKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~---------------- 801 (1012)
T KOG1445|consen 739 CKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLD---------------- 801 (1012)
T ss_pred ecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhcc----------------
Confidence 9999999999998666666544322 223457788899 8887777664 68889887621
Q ss_pred cccccccccccc-ceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 303 ANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 303 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
..++.+..-.. -.+.--.+.+|...++++|-.|..|.+|.+
T Consensus 802 -~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 802 -LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred -CCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 12222211100 012223456677678899999999999986
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1.1e-17 Score=146.11 Aligned_cols=211 Identities=10% Similarity=0.087 Sum_probs=141.2
Q ss_pred cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--CCeEEEEEcCCCCCCceeeecccCCC
Q 019059 90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGM 167 (346)
Q Consensus 90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~ 167 (346)
+..|.+||.+ +...+.+..|...+...+|+|||+++++++.. +..|++||+.+++.. .+. ...+
T Consensus 183 ~~~i~i~d~d----------g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~--~~~g- 248 (429)
T PRK01742 183 PYEVRVADYD----------GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVA--SFRG- 248 (429)
T ss_pred eEEEEEECCC----------CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEe--cCCC-
Confidence 5789999986 22245566788889999999999975555532 347999999865422 111 1122
Q ss_pred ceeeEEEEeCCCCCcEEEEe-cCCeEEE--EEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059 168 LHYLSGGAWDPHDVNAVAAT-CESSVQF--WDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242 (346)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~i--~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 242 (346)
....++|+||++.|+.+. .++.+.| ||+.+++. ..+.... +....|+|+|+.+++++..++...+|++....
T Consensus 249 --~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 249 --HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred --ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 234689999999888775 5776554 56665543 3333222 78899999998555566677888899876533
Q ss_pred cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEe
Q 019059 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW 322 (346)
Q Consensus 243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 322 (346)
.....+ .+.. ..+.|+|+| .+|+..+.++ +.+||+.+ ++.......+ ...++.|
T Consensus 326 ~~~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~-------------------g~~~~lt~~~--~~~~~~~ 379 (429)
T PRK01742 326 GGASLV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTS-------------------GSTEVLSSTF--LDESPSI 379 (429)
T ss_pred CCeEEe-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCC-------------------CCeEEecCCC--CCCCceE
Confidence 333333 3333 457899999 8888777665 55699887 3322111111 1356789
Q ss_pred CCCCCcEEEEeecCCeEEEeee
Q 019059 323 SSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 323 ~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
+|+|+ +|+.++.++...+|.+
T Consensus 380 sPdG~-~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 380 SPNGI-MIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCCC-EEEEEEcCCCceEEEE
Confidence 99997 7888888888887764
No 187
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.81 E-value=1.2e-15 Score=129.27 Aligned_cols=294 Identities=11% Similarity=0.133 Sum_probs=193.7
Q ss_pred EEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccc
Q 019059 31 FLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL 110 (346)
Q Consensus 31 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~ 110 (346)
+++|+++.+..+.|++++++.+...+.......-.....-++++|+++.|.++...+..++.|..|.+... ....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-----~g~L 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-----TGTL 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-----TTEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-----ccee
Confidence 67888877778999999998887777766555555667789999999888887511115789999998731 1234
Q ss_pred eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee-cc--------cCCCceeeEEEEeCCCCC
Q 019059 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-KQ--------SSGMLHYLSGGAWDPHDV 181 (346)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~--------~~~~~~~v~~~~~~~~~~ 181 (346)
+.+.+..........++++|++++++++...+|.|.++++........... .. .........++.++|+++
T Consensus 77 ~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 77 TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 555555434455678999999997555556699999999987533333211 00 001123467889999999
Q ss_pred cEEEEec-CCeEEEEEccCCCc-c---ce--eeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc---eeeecC
Q 019059 182 NAVAATC-ESSVQFWDLRSMGK-T---NS--IEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP---IQELPG 250 (346)
Q Consensus 182 ~l~~~~~-d~~i~i~d~~~~~~-~---~~--~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~ 250 (346)
++++... ...|.+|++..... + .. +..+. .+.++|+|++++++++.-.++.|.++++...... +..+..
T Consensus 157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 9888763 56899999987652 1 12 22233 9999999999977777778899999998832211 111211
Q ss_pred ------CCcceEEEEeCCCCCcEEEEe-cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059 251 ------HTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS 323 (346)
Q Consensus 251 ------~~~~v~~v~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 323 (346)
.......|+++|+| ++|+++ ..+++|.+|++..... ..+.+..+.......+.++++
T Consensus 237 ~~~~~~~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g---------------~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATG---------------TLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTT---------------TEEEEEEEEESSSSEEEEEE-
T ss_pred ccccccccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCC---------------ceEEEEEEeCCCCCccEEEEe
Confidence 11257889999999 666554 4577999999953000 012223333223347999999
Q ss_pred CCCCcEEEEeecCCeEEEeeec
Q 019059 324 SREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 324 ~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
|+|++++++...++.|.+|+++
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEecCCCeEEEEEEe
Confidence 9999777777788899999874
No 188
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=143.73 Aligned_cols=224 Identities=14% Similarity=0.188 Sum_probs=156.7
Q ss_pred eeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCe
Q 019059 114 AALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESS 191 (346)
Q Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~ 191 (346)
+.+.+|++.|+|+.|+.+|. ++++|++|-.+.|||.-..+... .-..+|...|.++.|-|. .+.+++++.|..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh----sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH----SISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceee----eeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 46789999999999999999 47777889999999988443222 223578889999999884 456778888999
Q ss_pred EEEEEccCCC----------ccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee---------c
Q 019059 192 VQFWDLRSMG----------KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL---------P 249 (346)
Q Consensus 192 i~i~d~~~~~----------~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~ 249 (346)
|+++|+...+ ....+. .| |..|+-.|++++.+.++++||+|+-+|+|.+..+-... .
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EEEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999998522 111121 33 88999999998899999999999999999744322211 1
Q ss_pred CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-cccc-----------cee
Q 019059 250 GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYE-----------DSV 317 (346)
Q Consensus 250 ~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~v 317 (346)
..--...++..+|..+.+|++|+.|-..++||.+.-.............+++. ..++.-+ .+|. ..+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~-~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKD-CRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcc-cchhheecCccccCcccccccceeee
Confidence 11234578999999999999999999999999665322222222222222211 1112111 1111 125
Q ss_pred eEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 318 YGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 318 ~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+-+.|+|+|..+|++-+.+ .|+++++.
T Consensus 277 t~vtfnpNGtElLvs~~gE-hVYlfdvn 303 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGE-HVYLFDVN 303 (758)
T ss_pred EEEEECCCCcEEEEeeCCe-EEEEEeec
Confidence 6789999998777777754 68888874
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=3.4e-18 Score=145.40 Aligned_cols=233 Identities=10% Similarity=0.191 Sum_probs=174.4
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF 146 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~ 146 (346)
.|..++|-|||..|+.+ .+..+.+||.. .+..+.++++|++.|+|++|+.+|+. +++++.|..|.
T Consensus 14 ci~d~afkPDGsqL~lA-----Ag~rlliyD~n---------dG~llqtLKgHKDtVycVAys~dGkr-FASG~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-----AGSRLLVYDTS---------DGTLLQPLKGHKDTVYCVAYAKDGKR-FASGSADKSVI 78 (1081)
T ss_pred chheeEECCCCceEEEe-----cCCEEEEEeCC---------CcccccccccccceEEEEEEccCCce-eccCCCceeEE
Confidence 79999999999999987 44589999988 78899999999999999999999994 66778899999
Q ss_pred EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEE
Q 019059 147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVT 226 (346)
Q Consensus 147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 226 (346)
+|...-. -+.. ..|...|.++.|+|-...+++++- ...-+|........+.-....+.+.+|..||. +++.
T Consensus 79 ~W~~klE----G~Lk---YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGq-ylal 149 (1081)
T KOG1538|consen 79 IWTSKLE----GILK---YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ-YLAL 149 (1081)
T ss_pred Eeccccc----ceee---eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCc-EEEE
Confidence 9986522 1222 236779999999998888887763 23567887654433222212299999999998 8999
Q ss_pred ecCCCeEEEEEcccCCcce--eeecCCCcceEEEEeCCCC----CcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059 227 AADESGIHLWDLRMLKAPI--QELPGHTHWTWAVCCNPEY----DGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300 (346)
Q Consensus 227 ~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~v~~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (346)
|..+|+|.+-+-.. ...+ ..-.+...+|.+++|+|.. ...+++.....++.+|.+..
T Consensus 150 G~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG---------------- 212 (1081)
T KOG1538|consen 150 GMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG---------------- 212 (1081)
T ss_pred eccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----------------
Confidence 99999999886432 2122 2222467899999999975 24677777778888887763
Q ss_pred ccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+.+..-..-.-...++.+.|+|. ++..|+.|+.+.+|.-+
T Consensus 213 ----~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 213 ----KQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFTRD 252 (1081)
T ss_pred ----eeecccccCCCCchhheeccCCc-EEEEccCCCceEEEeec
Confidence 44432222222357899999998 77788889999988644
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=8.3e-17 Score=136.32 Aligned_cols=233 Identities=12% Similarity=0.135 Sum_probs=150.3
Q ss_pred cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (346)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 166 (346)
...++.|.+|++.. ....+.+..+. +.+....+.++|+++.+++++..++.|.+|+++..............
T Consensus 8 ~~~~~~I~~~~~~~------~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~- 79 (330)
T PRK11028 8 SPESQQIHVWNLNH------EGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP- 79 (330)
T ss_pred cCCCCCEEEEEECC------CCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC-
Confidence 36789999999962 11334555553 34567789999999965455456899999999732222111111111
Q ss_pred CceeeEEEEeCCCCCcEEEEec-CCeEEEEEccCCC-c---cceeec-cceeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059 167 MLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMG-K---TNSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (346)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~-~---~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (346)
.....++++|+++.+++++. ++.|.+||+.+.. . ...+.. .++.+++++|++++++++...++.|.+||+.+
T Consensus 80 --~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 80 --GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred --CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 24568999999999988874 8899999997432 2 222221 12788899999986667777789999999976
Q ss_pred CCcce----eeec-CCCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCCCCCCCCCcccccCCcccccccccccccc--
Q 019059 241 LKAPI----QELP-GHTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-- 312 (346)
Q Consensus 241 ~~~~~----~~~~-~~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 312 (346)
.+... .... ........+.|+|++ ++++++.. +++|.+|++...... .+.+..+..
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~---------------~~~~~~~~~~p 221 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGE---------------IECVQTLDMMP 221 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCC---------------EEEEEEEecCC
Confidence 33211 0011 123446789999999 78877765 899999999741100 111111111
Q ss_pred ----ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 313 ----YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 313 ----~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+......+.++|++++++++...++.|.+|+++
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 112345689999998555554568899999874
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1e-17 Score=146.12 Aligned_cols=240 Identities=11% Similarity=0.113 Sum_probs=156.3
Q ss_pred CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC
Q 019059 41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV 120 (346)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 120 (346)
+..+++++++..+. ..+..|...+.+++|+|+++.|+.+.. .+.+..|.+||+.. ...+.+..+.+|
T Consensus 183 ~~~i~i~d~dg~~~----~~lt~~~~~v~~p~wSPDG~~la~~s~-~~~~~~i~i~dl~t-------g~~~~l~~~~g~- 249 (429)
T PRK01742 183 PYEVRVADYDGFNQ----FIVNRSSQPLMSPAWSPDGSKLAYVSF-ENKKSQLVVHDLRS-------GARKVVASFRGH- 249 (429)
T ss_pred eEEEEEECCCCCCc----eEeccCCCccccceEcCCCCEEEEEEe-cCCCcEEEEEeCCC-------CceEEEecCCCc-
Confidence 35677777655432 344567888999999999999987642 12345799999871 122233334333
Q ss_pred CceEEEEeecCCCCcEEEEecCCeEEEE--EcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEc
Q 019059 121 GKINCVLWWSSGRHDKLVSIDEENIFLW--SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDL 197 (346)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~ 197 (346)
...++|+|||+.++++...++.+.|| |+.++. ...+. .+...+....|+||++.++.++ .++...+|++
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt-----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLT-----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeec-----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 44689999999755555567766655 554432 22211 1233577889999999887766 4678888877
Q ss_pred cCCCc-cceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059 198 RSMGK-TNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 198 ~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
..... ...+... -....|+|+++ .++..+.++ +.+||+.+.. . ..+... .....+.|+|+| ++|+.++.++.
T Consensus 322 ~~~~~~~~~l~~~-~~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~-~-~~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~ 394 (429)
T PRK01742 322 SASGGGASLVGGR-GYSAQISADGK-TLVMINGDN-VVKQDLTSGS-T-EVLSST-FLDESPSISPNG-IMIIYSSTQGL 394 (429)
T ss_pred ECCCCCeEEecCC-CCCccCCCCCC-EEEEEcCCC-EEEEECCCCC-e-EEecCC-CCCCCceECCCC-CEEEEEEcCCC
Confidence 54322 2222111 24578999998 666665554 5569987632 2 222222 233567899999 89999888998
Q ss_pred EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (346)
+.+|++.. ..+.....+..|.+.+...+|+|-
T Consensus 395 ~~~l~~~~-----------------~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 395 GKVLQLVS-----------------ADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEEEEE-----------------CCCCceEEccCCCCCCCCcccCCC
Confidence 88887632 026677778888888999999985
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.4e-17 Score=146.90 Aligned_cols=272 Identities=19% Similarity=0.167 Sum_probs=176.5
Q ss_pred CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecC-CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-
Q 019059 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP-FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD- 117 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~- 117 (346)
....|.+|++......-....-......|+++.+-. ++..|+.+ ++.||.|+||+-..... .+.+.+..+.
T Consensus 1084 ~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLt---as~dGvIRIwk~y~~~~----~~~eLVTaw~~ 1156 (1387)
T KOG1517|consen 1084 DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLT---ASSDGVIRIWKDYADKW----KKPELVTAWSS 1156 (1387)
T ss_pred CcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheee---eccCceEEEeccccccc----CCceeEEeecc
Confidence 346677887766432111111112236788888854 33344444 37999999997542110 1223333221
Q ss_pred ------ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEEecCC
Q 019059 118 ------AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCES 190 (346)
Q Consensus 118 ------~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 190 (346)
+..+.-.-++|.....+ ++++|+-..|+|||.........+... ....++++.-+. .|+.+++|..||
T Consensus 1157 Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~----s~t~vTaLS~~~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1157 LSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYG----SSTLVTALSADLVHGNIIAAGFADG 1231 (1387)
T ss_pred ccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeEeecccC----CCccceeecccccCCceEEEeecCC
Confidence 11222245678777665 666666789999999865433333222 233566665433 357788888999
Q ss_pred eEEEEEccCCCc--cceeeccc-----eeEEEeCCCCCcEEEEecCCCeEEEEEcccC-CcceeeecCCC---cceEEEE
Q 019059 191 SVQFWDLRSMGK--TNSIEHAH-----VRNVDYDTKKKHLLVTAADESGIHLWDLRML-KAPIQELPGHT---HWTWAVC 259 (346)
Q Consensus 191 ~i~i~d~~~~~~--~~~~~~~~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~---~~v~~v~ 259 (346)
.|++||.+...+ .......| |..+.+.+.|-.-+++|+.+|.|++||+|.. .....++..|- +..+++.
T Consensus 1232 svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~ 1311 (1387)
T KOG1517|consen 1232 SVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALT 1311 (1387)
T ss_pred ceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeee
Confidence 999999986543 22222344 8889998877645999999999999999973 22222222222 2489999
Q ss_pred eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc-------ccceeeEEEeCCCCCcEEEE
Q 019059 260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-------YEDSVYGLAWSSREPWIFAS 332 (346)
Q Consensus 260 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s 332 (346)
.+++. ..+|+|+. +.|+||++.. +.+..+.. ..+.+.+++|+|... ++|+
T Consensus 1312 VH~ha-piiAsGs~-q~ikIy~~~G--------------------~~l~~~k~n~~F~~q~~gs~scL~FHP~~~-llAa 1368 (1387)
T KOG1517|consen 1312 VHEHA-PIIASGSA-QLIKIYSLSG--------------------EQLNIIKYNPGFMGQRIGSVSCLAFHPHRL-LLAA 1368 (1387)
T ss_pred eccCC-CeeeecCc-ceEEEEecCh--------------------hhhcccccCcccccCcCCCcceeeecchhH-hhhh
Confidence 99999 89999998 9999999984 33322221 234579999999875 8999
Q ss_pred eecCCeEEEeeecC
Q 019059 333 LSYDGRVRNHMLEK 346 (346)
Q Consensus 333 ~~~d~~v~vw~~~~ 346 (346)
|+.|.+|.||..++
T Consensus 1369 G~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1369 GSADSTVSIYSCEK 1382 (1387)
T ss_pred ccCCceEEEeecCC
Confidence 99999999998764
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.80 E-value=1.5e-17 Score=130.08 Aligned_cols=245 Identities=14% Similarity=0.195 Sum_probs=169.9
Q ss_pred eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (346)
Q Consensus 61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 140 (346)
++.--+.|.-+.|..+..+++++. ..++.|.+|++. +.+-...+......+.+++|+|||++++.++.
T Consensus 44 lf~cldki~yieW~ads~~ilC~~---yk~~~vqvwsl~---------Qpew~ckIdeg~agls~~~WSPdgrhiL~tse 111 (447)
T KOG4497|consen 44 LFLCLDKIVYIEWKADSCHILCVA---YKDPKVQVWSLV---------QPEWYCKIDEGQAGLSSISWSPDGRHILLTSE 111 (447)
T ss_pred HHHHHHHhhheeeeccceeeeeee---eccceEEEEEee---------cceeEEEeccCCCcceeeeECCCcceEeeeec
Confidence 333347788899999999999885 678899999998 45555677777889999999999999888888
Q ss_pred cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C------------------------------
Q 019059 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E------------------------------ 189 (346)
Q Consensus 141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d------------------------------ 189 (346)
.+-.|.+|.+.+........ ....+..++|+|+|++.+..+. |
T Consensus 112 F~lriTVWSL~t~~~~~~~~------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgie 185 (447)
T KOG4497|consen 112 FDLRITVWSLNTQKGYLLPH------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIE 185 (447)
T ss_pred ceeEEEEEEeccceeEEecc------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCce
Confidence 89999999998654221111 1225678889999887766543 2
Q ss_pred -----CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---------------------
Q 019059 190 -----SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--------------------- 242 (346)
Q Consensus 190 -----~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------- 242 (346)
..+.+||.--.-.+.....+- +..++|+|.++ ++++|+.|+.+|+.+--+.+
T Consensus 186 WsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 186 WSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK 264 (447)
T ss_pred ECCCCcEEEEecchhhheeeeeeeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence 124555543332322333223 89999999998 99999999988855321110
Q ss_pred --------------------------------------cceeeec------CCCcceEEEEeCCCCCcEEEEecC--CCe
Q 019059 243 --------------------------------------APIQELP------GHTHWTWAVCCNPEYDGFILSAGT--DST 276 (346)
Q Consensus 243 --------------------------------------~~~~~~~------~~~~~v~~v~~~~~~~~~l~s~~~--d~~ 276 (346)
..++.++ ...-.+.-++|++|. .++++-.+ -+.
T Consensus 265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~Pna 343 (447)
T KOG4497|consen 265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNA 343 (447)
T ss_pred hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCce
Confidence 0001111 122345678999999 88888664 357
Q ss_pred EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
+-+||++. .+ ++..-....+|....|+|..+ .|+.+....++++|...+
T Consensus 344 lW~Wdlq~-------------------l~-l~avLiQk~piraf~WdP~~p-rL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 344 LWLWDLQN-------------------LK-LHAVLIQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred EEEEechh-------------------hh-hhhhhhhccceeEEEeCCCCc-eEEEEcCCceEEEEcCCC
Confidence 99999997 33 444444566799999999887 455565567799998653
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.8e-17 Score=132.85 Aligned_cols=169 Identities=18% Similarity=0.296 Sum_probs=131.1
Q ss_pred ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe
Q 019059 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN 144 (346)
Q Consensus 65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 144 (346)
..+|..+.|.++....+++ +|.|..|++|-+............+.+..+..|...|+++.|+|+|. ++++++++|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT---~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~ 88 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLAT---AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGE 88 (434)
T ss_pred CCceEEEEeccCcccceec---ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCce
Confidence 3689999999987734444 58999999999875444433345667778899999999999999999 3555578899
Q ss_pred EEEEEcCCC------C-----CCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---
Q 019059 145 IFLWSLDCS------N-----KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--- 210 (346)
Q Consensus 145 i~vwd~~~~------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--- 210 (346)
|.+|..... . ...-.......+|...++.++|+|++.++++++.|..+++||+..++....+. +|
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~y 167 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHY 167 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-ccccc
Confidence 999987621 0 11112223345688899999999999999999999999999999998877665 44
Q ss_pred eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059 211 VRNVDYDTKKKHLLVTAADESGIHLWDLR 239 (346)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 239 (346)
+..++|.|-+. .+++-+.|...+.+++.
T Consensus 168 vqgvawDpl~q-yv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 168 VQGVAWDPLNQ-YVASKSSDRHPEGFSAK 195 (434)
T ss_pred cceeecchhhh-hhhhhccCcccceeeee
Confidence 99999999998 78887888766666654
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.9e-18 Score=141.59 Aligned_cols=298 Identities=16% Similarity=0.219 Sum_probs=223.8
Q ss_pred eecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCC--CceEEEEee
Q 019059 9 GYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFD--QRIFSTVFS 86 (346)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~~~ 86 (346)
-+.|+.+..++..+.++..+..++.|+ .+.++.+|+.......+ ....+|...|....|.|.. +.++.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgS----DD~~vv~WdW~~~~~~l--~f~SGH~~NvfQaKFiP~s~d~ti~~---- 204 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGS----DDLQVVVWDWVSGSPKL--SFESGHCNNVFQAKFIPFSGDRTIVT---- 204 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccC----ccceEEeehhhccCccc--ccccccccchhhhhccCCCCCcCcee----
Confidence 456677788999999999999988773 67789999988765544 4446899999999998853 34444
Q ss_pred cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC-
Q 019059 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS- 165 (346)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~- 165 (346)
++.||.+++=.+.. ....+....+..|.++|.-++.-|+..+.+++++.|+.+.-+|++.+.....+......
T Consensus 205 ~s~dgqvr~s~i~~------t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 205 SSRDGQVRVSEILE------TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred ccccCceeeeeecc------ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence 47999999988763 11223345677899999999999999998999999999999999987655555433211
Q ss_pred CCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCCc------cceeeccc--------eeEEEeCCCCCcEEEEecCC
Q 019059 166 GMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMGK------TNSIEHAH--------VRNVDYDTKKKHLLVTAADE 230 (346)
Q Consensus 166 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~--------v~~~~~~~~~~~~l~~~~~d 230 (346)
...-..+.++.+|... .+++++.|..+++||.+.-.. +..+.+.| |++++|+.++..+ ++...|
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl-LaSYnD 357 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL-LASYND 357 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce-eeeecc
Confidence 1123678899999776 577788899999999875322 23333222 9999999887744 455566
Q ss_pred CeEEEEEcccC-C----------ccee-eecCCCc--ceEEEE-eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccc
Q 019059 231 SGIHLWDLRML-K----------APIQ-ELPGHTH--WTWAVC-CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESL 295 (346)
Q Consensus 231 g~i~i~d~~~~-~----------~~~~-~~~~~~~--~v~~v~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 295 (346)
-.|++|.-... + ..+. .+++|.. .|..+- |-|.. .++++|+.=|.|.||+-.+
T Consensus 358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t----------- 425 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKT----------- 425 (559)
T ss_pred cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecch-----------
Confidence 78999843221 1 1222 3778874 455665 45667 9999999999999999998
Q ss_pred cCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 296 VESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
++.+..+.+-...|+||.=+|.-+ +||+.|-|.-|+||..
T Consensus 426 --------~eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 426 --------GEIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTP 465 (559)
T ss_pred --------hHHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeecC
Confidence 899988888777899999999998 9999999999999975
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.7e-18 Score=132.50 Aligned_cols=188 Identities=19% Similarity=0.324 Sum_probs=140.5
Q ss_pred EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCCccceeeccc---
Q 019059 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMGKTNSIEHAH--- 210 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--- 210 (346)
++++...|.|++||..+++....+. ++...++.++|..+ ...+++++.||+|++||+|.......+....
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk-----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFK-----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheec-----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 6666668999999999866544443 34446777787653 4457888899999999999877655544222
Q ss_pred --eeEEEeCCCCCcEEEEecC----CCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059 211 --VRNVDYDTKKKHLLVTAAD----ESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVS 283 (346)
Q Consensus 211 --v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~ 283 (346)
..+++.+-.+. ++++|.. +-.|.+||+|+..+++..+ ..|...|++++|+|..+++|++||.||-|.|||+.
T Consensus 118 ~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 118 TPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 66777765665 7777753 5579999999877656554 47999999999999999999999999999999998
Q ss_pred CCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 284 TSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
....+ ..++.++ .|.+.|..+.|...+=..+.+.+......+|+++
T Consensus 197 ~d~Ee---------------DaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 197 KDNEE---------------DALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred CCcch---------------hhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 72111 2334444 4667799999998772247778888999999986
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=6.1e-17 Score=126.10 Aligned_cols=233 Identities=15% Similarity=0.121 Sum_probs=162.0
Q ss_pred eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC-----
Q 019059 68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE----- 142 (346)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d----- 142 (346)
...++|..|...++++ .|...++|+.+ +.+.......+.+.+.-+..---.+++++++|.+
T Consensus 8 ~lsvs~NQD~ScFava-----~~~Gfriyn~~---------P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~ 73 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVA-----TDTGFRIYNCD---------PFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYP 73 (346)
T ss_pred eeEEEEccCCceEEEE-----ecCceEEEecC---------chhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCC
Confidence 3458999988877775 66679999998 3333333322332222222222334456666433
Q ss_pred -CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc-CCCccceeecc---c-eeEEEe
Q 019059 143 -ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR-SMGKTNSIEHA---H-VRNVDY 216 (346)
Q Consensus 143 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~---~-v~~~~~ 216 (346)
+.|.|||-.......++.. ..+|.++.+.++ .+++. ..+.|+||... +.+..+.+... . ..++.-
T Consensus 74 pNkviIWDD~k~~~i~el~f------~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSF------NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCP 144 (346)
T ss_pred CceEEEEecccCcEEEEEEe------ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecC
Confidence 6799999544333333332 338999998763 34444 46789999988 55555555422 2 555554
Q ss_pred CCCCCcEEE-EecCCCeEEEEEcccCCc-ceeeecCCCcceEEEEeCCCCCcEEEEecCCCe-EEEEecCCCCCCCCCcc
Q 019059 217 DTKKKHLLV-TAADESGIHLWDLRMLKA-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDST-VNLWLVSTSNHDELPSE 293 (346)
Q Consensus 217 ~~~~~~~l~-~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~ 293 (346)
..+.. +|+ -|-.-|.|.|-|+..... +...+..|...|.|++++-+| .++||+|..|+ |||||..+
T Consensus 145 ~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~--------- 213 (346)
T KOG2111|consen 145 TSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTED--------- 213 (346)
T ss_pred CCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCC---------
Confidence 44444 444 456679999999987443 357788999999999999999 99999999995 89999998
Q ss_pred cccCCccccccccccccccc--cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 294 SLVESPNQRANSLLNSYSDY--EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++++..+... ...|.+++|||+.. +||+.|+.|++.|+.+.
T Consensus 214 ----------g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 214 ----------GTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLR 256 (346)
T ss_pred ----------CcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEee
Confidence 8888777542 34699999999997 89999999999999875
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.3e-16 Score=118.48 Aligned_cols=273 Identities=15% Similarity=0.194 Sum_probs=183.7
Q ss_pred eccCCCCcceEEEeecccCCCCeEEEEEecCC-------CCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceE
Q 019059 21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSG-------GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGA 93 (346)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i 93 (346)
...++|..+-|++|. ..+.|.+..+... +.+...-...+|.++|..++|. ..+|+++ .||.|
T Consensus 15 ~qa~sp~~~~l~agn----~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-----gdG~V 83 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGN----LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-----GDGLV 83 (325)
T ss_pred HHhhCCcceEEEEec----CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-----cCceE
Confidence 344566666677763 4577888777631 2233334457899999999998 4567764 56999
Q ss_pred EEEecCcccCCCCCccceeeee--eecc-----CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059 94 AIWQIPELYGQLNSPQLERIAA--LDAH-----VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (346)
Q Consensus 94 ~vw~~~~~~~~~~~~~~~~~~~--~~~~-----~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 166 (346)
+=|...+..+.. ..+++-. ..-| --.|+++...|....+++++ .|+.++-||+++++-.. ...+
T Consensus 84 ~gw~W~E~~es~---~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r-----~~rG 154 (325)
T KOG0649|consen 84 YGWEWNEEEESL---ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQR-----EYRG 154 (325)
T ss_pred EEeeehhhhhhc---cchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEE-----EEcC
Confidence 999887432211 0111111 1112 24689999999888766666 59999999999875332 2356
Q ss_pred CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc--------c----eeEEEeCCCCCcEEEEecCCCeEE
Q 019059 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------H----VRNVDYDTKKKHLLVTAADESGIH 234 (346)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~----v~~~~~~~~~~~~l~~~~~dg~i~ 234 (346)
|...+.+++--.....+++|+.||++++||.++++++..+... + |.+++-+.+ .+++|+. ..+.
T Consensus 155 HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGgG-p~ls 230 (325)
T KOG0649|consen 155 HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGGG-PKLS 230 (325)
T ss_pred CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecCC-Ccee
Confidence 8889999988555677999999999999999999988776521 1 566665543 6666654 6899
Q ss_pred EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc
Q 019059 235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE 314 (346)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
+|.++. ..+...+. -...+..+.|.. ..+++++..+.|.-|.+.. .+-...+..+
T Consensus 231 lwhLrs-se~t~vfp-ipa~v~~v~F~~---d~vl~~G~g~~v~~~~l~G--------------------vl~a~ip~~s 285 (325)
T KOG0649|consen 231 LWHLRS-SESTCVFP-IPARVHLVDFVD---DCVLIGGEGNHVQSYTLNG--------------------VLQANIPVES 285 (325)
T ss_pred EEeccC-CCceEEEe-cccceeEeeeec---ceEEEeccccceeeeeecc--------------------EEEEeccCCc
Confidence 999997 55666665 456777788865 4578888788899998873 4444444434
Q ss_pred ceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059 315 DSVYGLAWSSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 315 ~~v~~~~~~~~~~~~l~s~~~d~~v~vw 342 (346)
...++..|+-.--.++..++..+.+.|+
T Consensus 286 ~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 286 TACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cceeeecccCCceEEEEecccceeeeee
Confidence 4466666654433356666667777665
No 199
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.80 E-value=9.7e-18 Score=139.07 Aligned_cols=245 Identities=11% Similarity=0.142 Sum_probs=167.0
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEe-----ecCCCCcEEEEec
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLW-----WSSGRHDKLVSID 141 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~ 141 (346)
.+....++-.+.+|+.. ....+.+|++.... ....++....-......|=+| .+.+-. ++.+-.
T Consensus 125 ~~~~~~~~~~gd~lcFn-----vg~~lyv~~~~g~~-----~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~d-llIGf~ 193 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFN-----VGRELYVYSYRGAA-----DLSKPIDKREYKGTSPTCHDFNSFTATPKGLD-LLIGFT 193 (636)
T ss_pred ceeeccccCCCCEEEEe-----cCCeEEEEEccCcc-----hhccchhhhcccCCCCceecccccccCCCCcc-eEEeec
Confidence 34455556667777764 33467888876200 011121111111112233334 244444 667766
Q ss_pred CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCC--------------C-----
Q 019059 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSM--------------G----- 201 (346)
Q Consensus 142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~--------------~----- 201 (346)
-|.|++.|... ....++......-....++++.|-|.+..++.++ .+|.+++||..-. .
T Consensus 194 tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 194 TGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred cCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence 78999888765 2233322222222335899999999777766555 6899999976410 0
Q ss_pred ---------ccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEE
Q 019059 202 ---------KTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS 270 (346)
Q Consensus 202 ---------~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s 270 (346)
++..+.... |+.++|+|||. .||+.+.||.+||||..+ ...+-.++.--+...|++||||| ++|++
T Consensus 273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDG-KyIvt 349 (636)
T KOG2394|consen 273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDG-KYIVT 349 (636)
T ss_pred eeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCc-cEEEe
Confidence 111111111 89999999998 899999999999999986 44555555566789999999999 99999
Q ss_pred ecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC-------------------------
Q 019059 271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR------------------------- 325 (346)
Q Consensus 271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------- 325 (346)
|++|.-|.||.+.. .+.+..-++|.++|..|+|.|-
T Consensus 350 GGEDDLVtVwSf~e-------------------rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~ 410 (636)
T KOG2394|consen 350 GGEDDLVTVWSFEE-------------------RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFE 410 (636)
T ss_pred cCCcceEEEEEecc-------------------ceEEEeccccccceeeEeecccccccccccccccccccccchhcccc
Confidence 99999999999998 8889999999999999999831
Q ss_pred ----------------------CCcEEEEeecCCeEEEeeec
Q 019059 326 ----------------------EPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 326 ----------------------~~~~l~s~~~d~~v~vw~~~ 345 (346)
-.+.|.+++.|..+.+||++
T Consensus 411 ~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt 452 (636)
T KOG2394|consen 411 IRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT 452 (636)
T ss_pred cccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence 12457889999999999985
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.1e-18 Score=137.29 Aligned_cols=193 Identities=12% Similarity=0.149 Sum_probs=144.5
Q ss_pred EEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc
Q 019059 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT 203 (346)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 203 (346)
.+++|+.+|.. +.+++.||.+|+|+......... ...|...|.++.|+||++.|++.+.| ..+||+.+++.++
T Consensus 148 k~vaf~~~gs~-latgg~dg~lRv~~~Ps~~t~l~-----e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSK-LATGGTDGTLRVWEWPSMLTILE-----EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCE-eeeccccceEEEEecCcchhhhh-----hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence 78999999883 77778999999999764432222 23466699999999999999999999 8999999999666
Q ss_pred ceeecc-c---eeEEEeCCCC---Cc-EEEEecCCCeEEEEEcccCCc----ceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059 204 NSIEHA-H---VRNVDYDTKK---KH-LLVTAADESGIHLWDLRMLKA----PIQELPGHTHWTWAVCCNPEYDGFILSA 271 (346)
Q Consensus 204 ~~~~~~-~---v~~~~~~~~~---~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 271 (346)
....+. . ...+.|+.++ .. +++....-+.|+.||+..... +.++...-...|++++.+++| +++|.|
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlG 299 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALG 299 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence 554421 1 7778887766 32 233333446777777654332 222222234579999999999 999999
Q ss_pred cCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-ccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
+.||.|.|++..+ -+.++-. ..|...|+.+.|+|+.+ .+++.+.|....|..+
T Consensus 300 T~dGsVai~~~~~-------------------lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 300 TMDGSVAIYDAKS-------------------LQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKL 353 (398)
T ss_pred ccCCcEEEEEece-------------------eeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEE
Confidence 9999999999987 4544433 46888999999999986 8888999988888765
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.2e-18 Score=137.91 Aligned_cols=196 Identities=12% Similarity=0.158 Sum_probs=147.0
Q ss_pred EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW 148 (346)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vw 148 (346)
..++|+++|..+++ ++.||++|||+++ ....+.....|...|.++.|+|||+. +++-+.| ..+||
T Consensus 148 k~vaf~~~gs~lat----gg~dg~lRv~~~P---------s~~t~l~e~~~~~eV~DL~FS~dgk~-lasig~d-~~~VW 212 (398)
T KOG0771|consen 148 KVVAFNGDGSKLAT----GGTDGTLRVWEWP---------SMLTILEEIAHHAEVKDLDFSPDGKF-LASIGAD-SARVW 212 (398)
T ss_pred eEEEEcCCCCEeee----ccccceEEEEecC---------cchhhhhhHhhcCccccceeCCCCcE-EEEecCC-ceEEE
Confidence 67899999988888 5899999999988 66777777899999999999999993 3333667 99999
Q ss_pred EcCCCCCCceeeecccCCCceeeEEEEeCCCC---CcEEEEe--cCCeEEEEEccCCCc-----cceeeccc--eeEEEe
Q 019059 149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD---VNAVAAT--CESSVQFWDLRSMGK-----TNSIEHAH--VRNVDY 216 (346)
Q Consensus 149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~d~~i~i~d~~~~~~-----~~~~~~~~--v~~~~~ 216 (346)
+.+++.......+. +-......+.|+.++ .+.+++. ..+.|+.||+..... .++....+ |.+++.
T Consensus 213 ~~~~g~~~a~~t~~---~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 213 SVNTGAALARKTPF---SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred EeccCchhhhcCCc---ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 99988544333322 122356667787665 3333332 356777777654332 11111122 999999
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+++|+ +++.|+.||.|.+++..+.......-+.|...|+.+.|+|+. +++++.+.|....|..+..
T Consensus 290 S~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 SDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence 99998 999999999999999987554444456799999999999999 9999999999999887764
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=5.7e-19 Score=143.77 Aligned_cols=228 Identities=12% Similarity=0.189 Sum_probs=181.8
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF 146 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~ 146 (346)
.-..+.++.+|++|+. ||..|.|..+|+. +.+....+. -...|.++.|-.+.+ +++......++
T Consensus 131 GPY~~~ytrnGrhlll----gGrKGHlAa~Dw~---------t~~L~~Ei~-v~Etv~Dv~~LHneq--~~AVAQK~y~y 194 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLL----GGRKGHLAAFDWV---------TKKLHFEIN-VMETVRDVTFLHNEQ--FFAVAQKKYVY 194 (545)
T ss_pred CCeeeeecCCccEEEe----cCCccceeeeecc---------cceeeeeee-hhhhhhhhhhhcchH--HHHhhhhceEE
Confidence 3456888999999999 5899999999988 666666663 356799999998887 55555688999
Q ss_pred EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEE
Q 019059 147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLL 224 (346)
Q Consensus 147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l 224 (346)
|||-.. ....-+.. ...+..+.|.|..-.|++++..|.++--|+.+|+.+..+..+. +..+.-+|-+. ++
T Consensus 195 vYD~~G-tElHClk~------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vi 266 (545)
T KOG1272|consen 195 VYDNNG-TELHCLKR------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VI 266 (545)
T ss_pred EecCCC-cEEeehhh------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eE
Confidence 999653 22222211 2278889999988888888899999999999999998887555 88888999887 88
Q ss_pred EEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (346)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
-+|...|+|.+|.... ..|+..+..|.++|.+|++.++| +|++|.+.|..++|||++. .
T Consensus 267 h~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~-------------------~ 325 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRN-------------------F 325 (545)
T ss_pred EEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeecc-------------------c
Confidence 9999999999999887 66888888899999999999999 9999999999999999998 4
Q ss_pred ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
..+.++.. ..+...+++|..| +| +.+....|.||.
T Consensus 326 ~ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~ 360 (545)
T KOG1272|consen 326 YQLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWK 360 (545)
T ss_pred cccceeec-CCCcccccccccc--ce-eeecCCeeeeeh
Confidence 55554443 3456788898765 34 445556788884
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=4.6e-17 Score=130.04 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=181.6
Q ss_pred eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec
Q 019059 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID 141 (346)
Q Consensus 62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 141 (346)
......|..++|.-+++.=+... .+.+..+....+.+..- .+....+........+|..++.. ++. ++++-.
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~--r~~~~~~~~~~~~E~~~---~s~~~~~~~~~l~~~~I~gl~~~-dg~--Litc~~ 123 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNA--RSADDDLPKFVIEEFEI---SSSLDDAKTVSLGTKSIKGLKLA-DGT--LITCVS 123 (412)
T ss_pred cchhhhhhhheeecCCceeEeec--cccCcccccccccCCcc---ccccccccccccccccccchhhc-CCE--EEEEec
Confidence 34456788889976554322221 24555677777662111 00111122334456677777765 455 777767
Q ss_pred CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEE-EecC--CeEEEEEccCCCccceeeccc--------
Q 019059 142 EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCE--SSVQFWDLRSMGKTNSIEHAH-------- 210 (346)
Q Consensus 142 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~i~d~~~~~~~~~~~~~~-------- 210 (346)
+|.+.+|....+.........-..+ ..+..+.-++..+++++ |+.. ..+.+||+.+.+++..-....
T Consensus 124 sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrV 201 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRV 201 (412)
T ss_pred CCcEEEEeccCCccccccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccccee
Confidence 8999999988443211111111111 25677777777777776 6666 789999999875543322111
Q ss_pred ---eeEEEeCCCC-CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059 211 ---VRNVDYDTKK-KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286 (346)
Q Consensus 211 ---v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 286 (346)
++++.|-+.. .+.|+++..-+.+++||.+..++|+..+.--+.+++++...|.+ +++++|..-+.+..||++.
T Consensus 202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~-- 278 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRG-- 278 (412)
T ss_pred eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC-cEEEEecccchhheecccC--
Confidence 7888888761 24899999999999999999889999999889999999999999 9999999999999999998
Q ss_pred CCCCCcccccCCccccccccccc-cccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 287 HDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++.... +.+-.+.|++|..+|..+ +++++|-|+.|||+|++
T Consensus 279 -----------------~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 279 -----------------GKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIK 320 (412)
T ss_pred -----------------ceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecc
Confidence 666665 888899999999999998 99999999999999986
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=5.7e-19 Score=153.38 Aligned_cols=237 Identities=17% Similarity=0.258 Sum_probs=187.5
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
+.+.+|...|.|+.|...|.++++ |+.|..++||..+ +..++..+++|.+.|+.++.+..+. ++++
T Consensus 184 krLlgH~naVyca~fDrtg~~Iit----gsdd~lvKiwS~e---------t~~~lAs~rGhs~ditdlavs~~n~-~iaa 249 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIIT----GSDDRLVKIWSME---------TARCLASCRGHSGDITDLAVSSNNT-MIAA 249 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEee----cCccceeeeeecc---------chhhhccCCCCccccchhccchhhh-hhhh
Confidence 557899999999999999999998 5799999999988 7889999999999999999988776 3555
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc-----ceeeccc-ee
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT-----NSIEHAH-VR 212 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~-v~ 212 (346)
++.|..|++|.+..+.....+ .+|...|++++|+|-. +.+.||++++||.+-.... ..+.... +.
T Consensus 250 aS~D~vIrvWrl~~~~pvsvL-----rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVL-----RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred cccCceEEEEecCCCchHHHH-----hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccccccee
Confidence 688999999999877644333 3577799999999943 7778999999999821111 1112122 77
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS 292 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 292 (346)
++-|...+. -+++++.|+.-..|.+... ..+...+.-+.++.+-..+.+++-.+..+.+|++.+
T Consensus 321 s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-------- 384 (1113)
T KOG0644|consen 321 SILFENNGD-RFLTGSRDGEARNHEFEQL-------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-------- 384 (1113)
T ss_pred eeecccccc-ccccccCCcccccchhhHh-------hhhccceEEEeccccccccceeeeeeeEeeeeeccc--------
Confidence 888888887 8999999998888876531 122333333333334335677777788999999998
Q ss_pred ccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+.+.+.+.+|...+..+.++|.++++..+++.||...|||+-
T Consensus 385 -----------g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 385 -----------GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred -----------chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 899999999999999999999998888999999999999974
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.9e-16 Score=137.94 Aligned_cols=239 Identities=13% Similarity=0.133 Sum_probs=153.9
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG 121 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (346)
.++++++++..+. ..+..+...+...+|+|+|+.|+.+... +.+..|.+|++.. ...+.+..+ .+
T Consensus 179 ~~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~-~g~~~i~i~dl~~-------G~~~~l~~~---~~ 243 (429)
T PRK03629 179 YELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFE-SGRSALVIQTLAN-------GAVRQVASF---PR 243 (429)
T ss_pred eeEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEec-CCCcEEEEEECCC-------CCeEEccCC---CC
Confidence 4677776665432 2233466789999999999998876422 2345789999871 122233333 33
Q ss_pred ceEEEEeecCCCCcEEEEecCC--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-C--eEEEEE
Q 019059 122 KINCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-S--SVQFWD 196 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~i~d 196 (346)
.+..+.|+|||+.++++...++ .|++||+.++.. ..+.. +...+....|+|+++.|+.++.+ + .|+++|
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~-----~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-----GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccC-----CCCCcCceEECCCCCEEEEEeCCCCCceEEEEE
Confidence 3456899999997666554444 588999986542 22211 12256788999999998877753 3 455567
Q ss_pred ccCCCccceeeccc-eeEEEeCCCCCcEEEEecCC--CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC
Q 019059 197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT 273 (346)
Q Consensus 197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~ 273 (346)
+.+++.......+. .....|+|+|+.+++++..+ ..|.+||+.... ...+.. ........|+|+| ..|+.++.
T Consensus 318 ~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~ 393 (429)
T PRK03629 318 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTD-TFLDETPSIAPNG-TMVIYSSS 393 (429)
T ss_pred CCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCC-CCCCCCceECCCC-CEEEEEEc
Confidence 76664432222223 67899999998444444443 358888987532 344442 2234567899999 88887777
Q ss_pred CCe---EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059 274 DST---VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 274 d~~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (346)
++. +.++++. +.....+..|.+.+...+|+|-
T Consensus 394 ~~~~~~l~~~~~~--------------------G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 394 QGMGSVLNLVSTD--------------------GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCceEEEEEECC--------------------CCCeEECccCCCCcCCcccCCC
Confidence 663 6677775 4555667778888899999983
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=137.39 Aligned_cols=214 Identities=16% Similarity=0.189 Sum_probs=156.4
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCC-CcE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGR-HDK 136 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~ 136 (346)
..+.+|++.|+++.|+.+|..|++ |+.|..+.|||.- ..++++.+ .+|...|.++.|-|... .++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~S----GSDD~r~ivWd~~---------~~KllhsI~TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLAS----GSDDTRLIVWDPF---------EYKLLHSISTGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhhccccceecceeecCCCCEEee----cCCcceEEeecch---------hcceeeeeecccccceeEEeeeccCCCeEE
Confidence 567899999999999999998888 5899999999986 56666665 58999999999998643 455
Q ss_pred EEEecCCeEEEEEcCCCCCC-----ceeeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccc------
Q 019059 137 LVSIDEENIFLWSLDCSNKN-----AQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTN------ 204 (346)
Q Consensus 137 ~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~------ 204 (346)
++++.|..|+++|+...+.. ......-...|...|..++-.|++.+ +.+++.||+|+-+|++....-.
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 66677999999999853211 11122223457778888999999854 6678899999999999643111
Q ss_pred -eee--ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-----------------ceeeec-CCC--------
Q 019059 205 -SIE--HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----------------PIQELP-GHT-------- 252 (346)
Q Consensus 205 -~~~--~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~~~~~-~~~-------- 252 (346)
.+. ... ..++..+|..+++|++|+.|-..++||.|...+ ++..+. +|.
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 111 011 789999999999999999999999999653211 122221 111
Q ss_pred ---cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059 253 ---HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286 (346)
Q Consensus 253 ---~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 286 (346)
..++-+.|+|+|..+|++-+.+ .|+++|+...+
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~ 306 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDK 306 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCC
Confidence 1245678999997777776655 69999998743
No 207
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=8.5e-15 Score=116.69 Aligned_cols=296 Identities=14% Similarity=0.159 Sum_probs=202.2
Q ss_pred ceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCc
Q 019059 29 TSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSP 108 (346)
Q Consensus 29 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~ 108 (346)
....+|+.+......|++|++....+.+....+..+.+.++-|+|+|+.++|.++. ..+.++.|..|.++... .
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~-----G 76 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDD-----G 76 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCC-----C
Confidence 45678888888889999999997777777777888889999999999998888875 23447889889887311 1
Q ss_pred cceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee-ccc--C-CC----ceeeEEEEeCCCC
Q 019059 109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS-KQS--S-GM----LHYLSGGAWDPHD 180 (346)
Q Consensus 109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~--~-~~----~~~v~~~~~~~~~ 180 (346)
....+........+-+.++++++++.++.+....|.|.++-++.......... ..+ . .| ..-+....+.|++
T Consensus 77 ~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 77 RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 22333222223334488999999997555555679999999976443332211 111 1 11 1127778899999
Q ss_pred CcEEEEec-CCeEEEEEccCCCccc----eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC----
Q 019059 181 VNAVAATC-ESSVQFWDLRSMGKTN----SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---- 250 (346)
Q Consensus 181 ~~l~~~~~-d~~i~i~d~~~~~~~~----~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 250 (346)
+++++..- -..|.+|++..++... .++++. .+.|.|+|+++...++.--+++|-+|........+..++.
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 99988863 4579999999776432 223333 9999999999966666777899999998864333333332
Q ss_pred -----CCcceEEEEeCCCCCcEEEEecC-CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059 251 -----HTHWTWAVCCNPEYDGFILSAGT-DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (346)
Q Consensus 251 -----~~~~v~~v~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (346)
-..+...|..+|+| ++|+++.. ..+|.+|.+...... -..+.....+....+++.++|
T Consensus 237 P~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~---------------L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGK---------------LELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred ccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCE---------------EEEEEEeccCCcCCccceeCC
Confidence 23567789999999 88887765 448888887751000 111222223444478999999
Q ss_pred CCCcEEEEeecCCeEEEeeecC
Q 019059 325 REPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 325 ~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
.++.++|+.-.+..|.+|.+++
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcC
Confidence 9986666666677799988753
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=3.8e-17 Score=124.03 Aligned_cols=258 Identities=17% Similarity=0.242 Sum_probs=173.0
Q ss_pred ecccceeeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCC
Q 019059 10 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE 89 (346)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~ 89 (346)
|.|..+...+.++.++.+ .|+..|. .-+.+.+|.+...-.....+ ..|...|+.+.--|++ .+.+ -|.
T Consensus 8 fvLRp~~~~v~s~~fqa~-~rL~sg~----~~G~V~~w~lqt~r~~~~~r--~~g~~~it~lq~~p~d-~l~t----qgR 75 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQAN-ERLMSGL----SVGIVKMWVLQTERDLPLIR--LFGRLFITNLQSIPND-SLDT----QGR 75 (323)
T ss_pred eEeccccchheehhhccc-hhhhccc----ccceEEEEEeecCccchhhh--hhccceeeceeecCCc-chhh----cCC
Confidence 444444444555554433 3455443 45789999998764332222 1366789999988874 4555 379
Q ss_pred cceEEEEecCcc---------------------cCCCCC-----------------ccceeee--ee----eccCCceEE
Q 019059 90 SYGAAIWQIPEL---------------------YGQLNS-----------------PQLERIA--AL----DAHVGKINC 125 (346)
Q Consensus 90 d~~i~vw~~~~~---------------------~~~~~~-----------------~~~~~~~--~~----~~~~~~i~~ 125 (346)
|..+.+|++... .+.+.. .-+.... .. ....+.+.|
T Consensus 76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 999999998741 000000 0000000 00 112345666
Q ss_pred EEee-cCCCCcEE-EEecCCeEEEEEcCCCCCCceeee-----cccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc
Q 019059 126 VLWW-SSGRHDKL-VSIDEENIFLWSLDCSNKNAQVQS-----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 198 (346)
Q Consensus 126 ~~~~-~~~~~~~~-~~~~d~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (346)
..|. .++.++++ ++.++|.+.+||+.++.....+.. .....|..++.++.+.+.-..=+.++.+..+..|.+.
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 6653 33444444 456799999999997633322211 1234577799999998776667777777888899887
Q ss_pred CC--Cc--cceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec
Q 019059 199 SM--GK--TNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG 272 (346)
Q Consensus 199 ~~--~~--~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~ 272 (346)
.. .. ...+...+ +..+..-||++ ++++++-|+.||+|..++ ..|+..++-|...|++++|+|+. .++|+++
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~-~lmAaas 312 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDC-ELMAAAS 312 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCC-chhhhcc
Confidence 43 21 12222223 99999999998 999999999999999998 55899999999999999999998 8999999
Q ss_pred CCCeEEEEec
Q 019059 273 TDSTVNLWLV 282 (346)
Q Consensus 273 ~d~~i~iwd~ 282 (346)
.|++|.+|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 9999999986
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.7e-16 Score=122.80 Aligned_cols=248 Identities=13% Similarity=0.169 Sum_probs=158.0
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecCCe
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEEN 144 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~ 144 (346)
-.+..++|++.--.++++ ..|-.|++|+-. . .....++ .....|.|++|-|.+...+++++ .+-
T Consensus 99 ~dlr~~aWhqH~~~fava----~nddvVriy~ks---------s-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~g 163 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVA----TNDDVVRIYDKS---------S-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAG 163 (445)
T ss_pred cceeeEeechhhhhhhhh----ccCcEEEEeccC---------C-CCCceecchhhcceeEEEeccCCcceeeeee-cce
Confidence 456789999865555554 588899999976 2 3333332 23568999999998877566666 578
Q ss_pred EEEEEcCCCCCCcee---------eecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc--ee
Q 019059 145 IFLWSLDCSNKNAQV---------QSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH--VR 212 (346)
Q Consensus 145 i~vwd~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~--v~ 212 (346)
|.+|........... .....++| ..|++++|++||..+++++ .|..|.|||..++....-...+- +.
T Consensus 164 IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s 242 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS 242 (445)
T ss_pred eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence 999987632211111 11112344 5899999999999999988 47899999999988665543233 99
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS 292 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 292 (346)
-+.|+||+. .|+++.-|+..++|...+.....+-.. ..+.|..-+|+|+|..+|++.+.. -++|.+..........
T Consensus 243 lLkwSPdgd-~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 243 LLKWSPDGD-VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFL 318 (445)
T ss_pred eEEEcCCCC-EEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCcccc
Confidence 999999999 788888999999996554332333233 345899999999996666666544 4566665422211111
Q ss_pred c--cccCCcccccccccccccc---ccceeeEEEeCCCCCcEEEEee
Q 019059 293 E--SLVESPNQRANSLLNSYSD---YEDSVYGLAWSSREPWIFASLS 334 (346)
Q Consensus 293 ~--~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~ 334 (346)
. +.........-..+....+ -.+.+.+++|+|.|. +||+.-
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~f 364 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIF 364 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEE
Confidence 0 0000000000111111111 134688999999998 566544
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=6.1e-17 Score=134.49 Aligned_cols=198 Identities=17% Similarity=0.232 Sum_probs=152.1
Q ss_pred CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (346)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 167 (346)
++||.+.+-+-. ++..+.+..|.+.+.+-.|+|+|.. ++++++||.|++|.-.. - ......+ .
T Consensus 82 s~DGkf~il~k~----------~rVE~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWSrsG-M-LRStl~Q----~ 144 (737)
T KOG1524|consen 82 SNDGRFVILNKS----------ARVERSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWSRSG-M-LRSTVVQ----N 144 (737)
T ss_pred cCCceEEEeccc----------chhhhhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEeccc-h-HHHHHhh----c
Confidence 689999888753 5666678899999999999999996 77888999999998542 2 2222221 1
Q ss_pred ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcc
Q 019059 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAP 244 (346)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 244 (346)
..+|++++|.|+.+.++.+. .+.+.+=.+.....+.... +| |.++.|++..+ ++++|++|-..++||.. +.+
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~--G~~ 219 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ--GAN 219 (737)
T ss_pred CceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCcccc-ceeecCCceeEEeeccc--Ccc
Confidence 23899999999988776653 4667777777666666666 56 99999999998 99999999999999976 567
Q ss_pred eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (346)
Q Consensus 245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (346)
+..-..|..+|++++|+|+ ..++.+|. +++|+ .. ...+.|..++||+
T Consensus 220 Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~---~~---------------------------p~~GSifnlsWS~ 266 (737)
T KOG1524|consen 220 LFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARF---SS---------------------------PRVGSIFNLSWSA 266 (737)
T ss_pred cccCChhccceeeeeeccc--cceeeeee-eeeee---cC---------------------------CCccceEEEEEcC
Confidence 7777889999999999998 45555553 23441 11 2345699999999
Q ss_pred CCCcEEEEeecCCeEEE
Q 019059 325 REPWIFASLSYDGRVRN 341 (346)
Q Consensus 325 ~~~~~l~s~~~d~~v~v 341 (346)
||. .++.|...|.+.+
T Consensus 267 DGT-Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 267 DGT-QATCGTSTGQLIV 282 (737)
T ss_pred CCc-eeeccccCceEEE
Confidence 996 7888877777654
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=6.5e-17 Score=134.31 Aligned_cols=226 Identities=12% Similarity=0.246 Sum_probs=155.9
Q ss_pred ccccceEEeeecCCCCceEEEEeecCCcceEEEEe-cCcccCCCCCccceeeeeeeccCCceEEEEe-e------cCCCC
Q 019059 63 SHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ-IPELYGQLNSPQLERIAALDAHVGKINCVLW-W------SSGRH 134 (346)
Q Consensus 63 ~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~------~~~~~ 134 (346)
.|...|.++.|+.....+.++ +|..+.+|. +.. .....+.-...-+....+ - ..+..
T Consensus 12 r~~e~vc~v~w~~~eei~~~~-----dDh~~~~~~~~~~----------~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVS-----DDHQIFKWSDVSR----------DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccceEEEec-----cCceEEEeecccc----------hhhhhhhCCcccCCccccccccccCCCCCcc
Confidence 567778899999877666663 565665554 431 111111111111111100 0 01222
Q ss_pred cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeE
Q 019059 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRN 213 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~ 213 (346)
.++.++.||.+.+.+-.. + .... -..|...+.+-.|+|+|.-|++++.||.|++|.....-.....+.+. |+|
T Consensus 77 ~~~i~s~DGkf~il~k~~-r-VE~s----v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-R-VERS----ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRC 150 (737)
T ss_pred eEEEEcCCceEEEecccc-h-hhhh----hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEE
Confidence 467777799988876432 1 1111 23466688999999999999999999999999855332222222233 999
Q ss_pred EEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcc
Q 019059 214 VDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSE 293 (346)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 293 (346)
++|.|+.+.++++.+ +.+.+=-+.. ...+...+.|.+-|.++.|++.. .++++|++|-..+|||..
T Consensus 151 ~~W~p~S~~vl~c~g--~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~---------- 216 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQG--GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQ---------- 216 (737)
T ss_pred EEECCCCCceEEecC--CeEEEeeccc-ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeeccc----------
Confidence 999999986776654 4666666664 33566788999999999999999 999999999999999998
Q ss_pred cccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059 294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (346)
+..++.-..|.-+|++++|+|+ . .++.+|.
T Consensus 217 ----------G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~ 246 (737)
T KOG1524|consen 217 ----------GANLFTSAAEEYAITSVAFNPE-K-DYLLWSY 246 (737)
T ss_pred ----------CcccccCChhccceeeeeeccc-c-ceeeeee
Confidence 5888888889999999999998 4 5666664
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.9e-15 Score=129.99 Aligned_cols=294 Identities=13% Similarity=0.133 Sum_probs=199.9
Q ss_pred eccCCCCcceEEEeecccCCCCeEEEEEecC-CCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecC
Q 019059 21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSS-GGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~ 99 (346)
....++.+..++.|. .+|+|.+|+=.. +.....+..+.-|.++|.+++|+++|.+|++ ||..+.+-+|.++
T Consensus 210 ~~~~spn~~~~Aa~d----~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlS----GG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 210 CVALSPNERYLAAGD----SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLS----GGREGVLVLWQLE 281 (792)
T ss_pred eEEeccccceEEEec----cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEee----cccceEEEEEeec
Confidence 344555665566553 468899997544 4555667788889999999999999999999 5899999999998
Q ss_pred cccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc------cCCCceeeEE
Q 019059 100 ELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ------SSGMLHYLSG 173 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~v~~ 173 (346)
+.+ .+-+..-.++|..+.++||+.. ......|+.|.+....+......+.... ......-.+.
T Consensus 282 ---------T~~-kqfLPRLgs~I~~i~vS~ds~~-~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~ 350 (792)
T KOG1963|consen 282 ---------TGK-KQFLPRLGSPILHIVVSPDSDL-YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG 350 (792)
T ss_pred ---------CCC-cccccccCCeeEEEEEcCCCCe-EEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence 333 3445556789999999999994 5555679999998875432211111110 1223445678
Q ss_pred EEeCCCCCcEEEEecCCeEEEEEccCCCccceeec-------c----c--eeEEEeCCCCCcEEEEec--------CC--
Q 019059 174 GAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-------A----H--VRNVDYDTKKKHLLVTAA--------DE-- 230 (346)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~----~--v~~~~~~~~~~~~l~~~~--------~d-- 230 (346)
++++|.-+.++..+..+.|.+||+-+.+.+..+.. + + ++.++.+..|. +++|.- .|
T Consensus 351 ~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs-~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 351 VSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS-WMATLEARIDKFNFFDGE 429 (792)
T ss_pred EEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce-EEEEeeeeehhhhccCce
Confidence 89999777788888999999999998876655431 1 1 77888888876 677643 23
Q ss_pred CeEEEEEcccCCc--c--eeeecCCCcceEEEEeCC-CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccc
Q 019059 231 SGIHLWDLRMLKA--P--IQELPGHTHWTWAVCCNP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANS 305 (346)
Q Consensus 231 g~i~i~d~~~~~~--~--~~~~~~~~~~v~~v~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (346)
-.+++|-.....+ . ......|...+...++.+ .....+++++.||.++||-+...+.... ....+.
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k---------~~s~W~ 500 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK---------KSSNWT 500 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc---------CccceE
Confidence 3578887653221 1 122346776666555544 3323899999999999998854111100 001133
Q ss_pred cccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 306 LLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+...-.-|..++++.+|+.||. +++++.|+.|.+||..
T Consensus 501 c~~i~sy~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 501 CKAIGSYHKTPITALCFSQDGS--LLAVSFDDTITIWDYD 538 (792)
T ss_pred EeeeeccccCcccchhhcCCCc--EEEEecCCEEEEecCC
Confidence 3333333778899999999996 5677889999999965
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.2e-15 Score=118.65 Aligned_cols=243 Identities=16% Similarity=0.193 Sum_probs=151.8
Q ss_pred CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG 103 (346)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~ 103 (346)
+++....|++++ .+..|++++-+.. .........+..|++++|-|.+..-++. +--+-|.+|..+...+
T Consensus 106 WhqH~~~fava~----nddvVriy~ksst---~pt~Lks~sQrnvtclawRPlsaselav----gCr~gIciW~~s~tln 174 (445)
T KOG2139|consen 106 WHQHIIAFAVAT----NDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPLSASELAV----GCRAGICIWSDSRTLN 174 (445)
T ss_pred echhhhhhhhhc----cCcEEEEeccCCC---CCceecchhhcceeEEEeccCCcceeee----eecceeEEEEcCcccc
Confidence 333455566553 3456666655442 2222233455789999999987665554 2455799999874422
Q ss_pred CCCC---cc--ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC
Q 019059 104 QLNS---PQ--LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP 178 (346)
Q Consensus 104 ~~~~---~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 178 (346)
.... .. ...+....+| .+|+++.|++||..++-++-.|..|.|||.+++...... ... ...+.-+.|+|
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~g----lgg~slLkwSP 248 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKG----LGGFSLLKWSP 248 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccC----CCceeeEEEcC
Confidence 2111 00 1111223344 689999999999964444456899999999987643332 221 22688899999
Q ss_pred CCCcEEEEecCCeEEEEEccCC-Cccceee-ccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCC------------cc
Q 019059 179 HDVNAVAATCESSVQFWDLRSM-GKTNSIE-HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK------------AP 244 (346)
Q Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~ 244 (346)
|+..++++.-|+..++|..... ...+-.. .+.|....|+|.|.++|++.+....++-....... .+
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeee
Confidence 9999999999999999965533 3332222 22399999999999888887765554433222100 00
Q ss_pred eeee------cC---CCcceEEEEeCCCCCcEEEEecCC--------CeEEEEecCC
Q 019059 245 IQEL------PG---HTHWTWAVCCNPEYDGFILSAGTD--------STVNLWLVST 284 (346)
Q Consensus 245 ~~~~------~~---~~~~v~~v~~~~~~~~~l~s~~~d--------~~i~iwd~~~ 284 (346)
+..+ .+ -.+++.+++|.|.| .+||+.-.. ..|.+||.+.
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 0011 11 13578899999999 888875443 3467788776
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=2.9e-17 Score=128.57 Aligned_cols=221 Identities=15% Similarity=0.191 Sum_probs=152.4
Q ss_pred EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE
Q 019059 70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS 149 (346)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd 149 (346)
-++|||+|++++++ .+..+.|-|.. +.+..+-+. .-+.|..+.|..|..+++.+...++.|.+|+
T Consensus 13 ~c~fSp~g~yiAs~-----~~yrlviRd~~---------tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 13 FCSFSPCGNYIASL-----SRYRLVIRDSE---------TLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred ceeECCCCCeeeee-----eeeEEEEeccc---------hhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEE
Confidence 46899999999886 56677787776 555544442 2467888999999987666668899999999
Q ss_pred cCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEe
Q 019059 150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTA 227 (346)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~ 227 (346)
+...+-..++... ...+..+.|+|+|++++..+. +-.|.+|.+.+.+....-...+ +..++|+|+|+ +.+..
T Consensus 78 l~Qpew~ckIdeg-----~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~-f~ai~ 151 (447)
T KOG4497|consen 78 LVQPEWYCKIDEG-----QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQ-FCAIL 151 (447)
T ss_pred eecceeEEEeccC-----CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCc-eeeee
Confidence 9865544443322 337899999999988877764 8899999999887665444344 99999999998 44444
Q ss_pred c-CCCe--EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059 228 A-DESG--IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (346)
Q Consensus 228 ~-~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
+ .|.. +.+..-.. -..+..+...+-..+.+.|+||| ..|| +||.-. .
T Consensus 152 sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~L-------------------e 201 (447)
T KOG4497|consen 152 SRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVL-------------------E 201 (447)
T ss_pred ecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCC-cEEE---------Eecchh-------------------h
Confidence 3 3321 22221111 12344555556677899999999 6555 565443 1
Q ss_pred ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
-.+..+. ..-.+..++|+|.++ +|+.|+.|+.+|+-+
T Consensus 202 ykv~aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrvln 238 (447)
T KOG4497|consen 202 YKVYAYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLN 238 (447)
T ss_pred heeeeee-eccceeEEEeccccc-eEEeeccchhhhhhc
Confidence 1111111 123488899999987 999999999998854
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.73 E-value=2.4e-14 Score=121.28 Aligned_cols=268 Identities=9% Similarity=0.076 Sum_probs=164.0
Q ss_pred CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 119 (346)
.++.+.+++....+ ....+......-..+.|+||+++++++ +.|+.|.++|+. +.+.+.+++..
T Consensus 14 ~~~~v~viD~~t~~---~~~~i~~~~~~h~~~~~s~Dgr~~yv~----~rdg~vsviD~~---------~~~~v~~i~~G 77 (369)
T PF02239_consen 14 GSGSVAVIDGATNK---VVARIPTGGAPHAGLKFSPDGRYLYVA----NRDGTVSVIDLA---------TGKVVATIKVG 77 (369)
T ss_dssp GGTEEEEEETTT-S---EEEEEE-STTEEEEEE-TT-SSEEEEE----ETTSEEEEEETT---------SSSEEEEEE-S
T ss_pred CCCEEEEEECCCCe---EEEEEcCCCCceeEEEecCCCCEEEEE----cCCCeEEEEECC---------cccEEEEEecC
Confidence 46788888765532 223333332333457899999998886 478999999998 67888888664
Q ss_pred CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccC--CCceeeEEEEeCCCCCcEEEEec-CCeEEEEE
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSS--GMLHYLSGGAWDPHDVNAVAATC-ESSVQFWD 196 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d 196 (346)
. ...++++++||++++++....+.+.++|.++.+....+...... .....+.++..+|....+++.-. .+.|.+.|
T Consensus 78 ~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 78 G-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp S-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred C-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 4 46889999999975555577999999999887655554433211 13346778888888876666655 48888889
Q ss_pred ccCCCccc--eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc------------------------------
Q 019059 197 LRSMGKTN--SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA------------------------------ 243 (346)
Q Consensus 197 ~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------------------ 243 (346)
....+... .+..+. .....|+|++++++++...+..|-++|.++.+.
T Consensus 157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred eccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 87765442 333344 889999999996666666666777777665321
Q ss_pred ------------------------ceeeecCCCcceEEEEeCCCCCcEEEEe----cCCCeEEEEecCCCCCCCCCcccc
Q 019059 244 ------------------------PIQELPGHTHWTWAVCCNPEYDGFILSA----GTDSTVNLWLVSTSNHDELPSESL 295 (346)
Q Consensus 244 ------------------------~~~~~~~~~~~v~~v~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~ 295 (346)
.++++.....+ ..+..+|++ +++.+. ...++|.++|.++
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~t----------- 303 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKT----------- 303 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCG-----------
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcC-----------
Confidence 01111111122 456778999 777776 4457999999998
Q ss_pred cCCcccccccccccccccc-ceeeEEEeCCCCCcEEEEeecCC-eEEEeeec
Q 019059 296 VESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASLSYDG-RVRNHMLE 345 (346)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~-~v~vw~~~ 345 (346)
.+.+..+.... ..+..+.|+++|+.+.+|.-.++ .|.+||-.
T Consensus 304 --------l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 304 --------LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp --------TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred --------cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 55555554322 24889999999997777776666 89999854
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=3.9e-15 Score=130.51 Aligned_cols=228 Identities=11% Similarity=0.055 Sum_probs=142.6
Q ss_pred CceEEEEeecCC---cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCC
Q 019059 78 QRIFSTVFSTGE---SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDC 152 (346)
Q Consensus 78 ~~l~~~~~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~ 152 (346)
.+++.+...++. ...|.++|.+ +...+.+..|...+.+.+|+|||+.+++++. .+..|.+||+.+
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~d----------g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~ 235 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQD----------GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET 235 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECCC----------CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC
Confidence 345544332332 3467777765 3444566678889999999999997666653 357899999987
Q ss_pred CCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEec
Q 019059 153 SNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAA 228 (346)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~ 228 (346)
+.. ..+. . +...+...+|+|||+.++... .++ .|++||+.+++......... .....|+|+++.++++..
T Consensus 236 g~~-~~l~--~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~ 309 (435)
T PRK05137 236 GQR-ELVG--N---FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESD 309 (435)
T ss_pred CcE-EEee--c---CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEEC
Confidence 643 1221 1 222566789999999876554 444 58888998776533222222 678999999984444443
Q ss_pred CCC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC---CeEEEEecCCCCCCCCCcccccCCccccc
Q 019059 229 DES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD---STVNLWLVSTSNHDELPSESLVESPNQRA 303 (346)
Q Consensus 229 ~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 303 (346)
.+| .|+++|+.. . ..+.+..+...+....|+|+| ..|+..+.+ ..|.+||+..
T Consensus 310 ~~g~~~Iy~~d~~g-~-~~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~------------------- 367 (435)
T PRK05137 310 RSGSPQLYVMNADG-S-NPRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDG------------------- 367 (435)
T ss_pred CCCCCeEEEEECCC-C-CeEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCC-------------------
Confidence 444 577778764 3 344454445566778899999 777665443 3678888754
Q ss_pred cccccccccccceeeEEEeCCCCCcEEEEeecC-----CeEEEeeec
Q 019059 304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD-----GRVRNHMLE 345 (346)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~v~vw~~~ 345 (346)
+. ...+.. ...+..+.|+|+|+.++.+.... ..+.+++++
T Consensus 368 ~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 368 SG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred Cc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 21 122221 12367789999998444444333 256666664
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=5.5e-15 Score=129.53 Aligned_cols=218 Identities=8% Similarity=0.021 Sum_probs=139.6
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG 121 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (346)
.++++++....+ .+.+..|...+...+|+|+++.|+.+.+. +.+..|.+||+. .++. ..+..+.+
T Consensus 182 ~~l~~~d~dg~~----~~~lt~~~~~v~~p~wSpDG~~lay~s~~-~g~~~i~~~dl~---------~g~~-~~l~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGAN----VRYLTDGSSLVLTPRFSPNRQEITYMSYA-NGRPRVYLLDLE---------TGQR-ELVGNFPG 246 (435)
T ss_pred eEEEEECCCCCC----cEEEecCCCCeEeeEECCCCCEEEEEEec-CCCCEEEEEECC---------CCcE-EEeecCCC
Confidence 356666654332 13445678899999999999998887532 234789999987 3332 33445566
Q ss_pred ceEEEEeecCCCCcEEEEecCC--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C--CeEEEEE
Q 019059 122 KINCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWD 196 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d 196 (346)
.+...+|+|||+.++++.+.++ .|++||+.++.. ..+. .+........|+||++.++..+. + ..|+++|
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt-----~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLT-----DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEcc-----CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 7788999999997666665555 477778876542 2221 12224566899999999887764 3 3688889
Q ss_pred ccCCCccceeeccc-eeEEEeCCCCCcEEEEecCC--CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC
Q 019059 197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT 273 (346)
Q Consensus 197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~ 273 (346)
+..++......... +....|+|+|+.++++.... ..|.+||+.. + ....+. ....+..+.|+|+| +.|+..+.
T Consensus 321 ~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt-~~~~~~~p~~spDG-~~i~~~~~ 396 (435)
T PRK05137 321 ADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-S-GERILT-SGFLVEGPTWAPNG-RVIMFFRQ 396 (435)
T ss_pred CCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-C-ceEecc-CCCCCCCCeECCCC-CEEEEEEc
Confidence 87665433222122 77789999999444443333 3677888753 2 233333 23356788999999 66655433
Q ss_pred -C-----CeEEEEecCC
Q 019059 274 -D-----STVNLWLVST 284 (346)
Q Consensus 274 -d-----~~i~iwd~~~ 284 (346)
. ..+.++|+..
T Consensus 397 ~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 397 TPGSGGAPKLYTVDLTG 413 (435)
T ss_pred cCCCCCcceEEEEECCC
Confidence 2 2577777765
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=4.5e-15 Score=129.39 Aligned_cols=215 Identities=10% Similarity=0.043 Sum_probs=136.1
Q ss_pred ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
..|.+||.+ +...+.+..+...+...+|+|||+.+++++. .+..|.+|++.+++. ..+. ...+
T Consensus 179 ~~l~~~d~d----------g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~--~~~~-- 243 (429)
T PRK03629 179 YELRVSDYD----------GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVA--SFPR-- 243 (429)
T ss_pred eeEEEEcCC----------CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEcc--CCCC--
Confidence 468888876 2223444556778999999999997665552 246799999986542 1111 1122
Q ss_pred eeeEEEEeCCCCCcEEEEe-cCC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEE--EcccCC
Q 019059 169 HYLSGGAWDPHDVNAVAAT-CES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLW--DLRMLK 242 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~ 242 (346)
.....+|+|||+.|+... .++ .|++||+.+++......... +....|+|+++.++++...++...+| |+.. +
T Consensus 244 -~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-g 321 (429)
T PRK03629 244 -HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-G 321 (429)
T ss_pred -CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-C
Confidence 345679999999888764 344 59999998876543332222 78899999998444454445555555 5543 2
Q ss_pred cceeeecCCCcceEEEEeCCCCCcEEEEecC-C--CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGT-D--STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319 (346)
Q Consensus 243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (346)
....+..+........|+|+| .+|+..+. + ..|.+||+.+ ++. ..+... .....
T Consensus 322 -~~~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~-------------------g~~-~~Lt~~-~~~~~ 378 (429)
T PRK03629 322 -APQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLAT-------------------GGV-QVLTDT-FLDET 378 (429)
T ss_pred -CeEEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCC-------------------CCe-EEeCCC-CCCCC
Confidence 344444444556678999999 77766543 3 3588889876 322 222211 12346
Q ss_pred EEeCCCCCcEEEEeecCCe---EEEeeecC
Q 019059 320 LAWSSREPWIFASLSYDGR---VRNHMLEK 346 (346)
Q Consensus 320 ~~~~~~~~~~l~s~~~d~~---v~vw~~~~ 346 (346)
..|+|||+ +|+..+.++. +.++++++
T Consensus 379 p~~SpDG~-~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 379 PSIAPNGT-MVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred ceECCCCC-EEEEEEcCCCceEEEEEECCC
Confidence 78999998 6666666654 66666653
No 219
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=1e-13 Score=110.48 Aligned_cols=231 Identities=13% Similarity=0.178 Sum_probs=158.1
Q ss_pred CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccC
Q 019059 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG 103 (346)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~ 103 (346)
++.+...+.+|+. ....+++..+..+ ......-...|--+-|+. ..++.+. -.+.+.+++.++.
T Consensus 13 ~Nqd~~~lsvGs~-----~Gyk~~~~~~~~k---~~~~~~~~~~IvEmLFSS--SLvaiV~--~~qpr~Lkv~~~K---- 76 (391)
T KOG2110|consen 13 FNQDSTLLSVGSK-----DGYKIFSCSPFEK---CFSKDTEGVSIVEMLFSS--SLVAIVS--IKQPRKLKVVHFK---- 76 (391)
T ss_pred eccceeEEEccCC-----CceeEEecCchHH---hhcccCCCeEEEEeeccc--ceeEEEe--cCCCceEEEEEcc----
Confidence 4555555666542 2334454444322 111111123455555653 3444432 1334679999987
Q ss_pred CCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcE
Q 019059 104 QLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA 183 (346)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 183 (346)
....+..+ ....+|.++.++.+. +++.- ...|+|||+.+-+....+.... .+...+.++.+++.+.++
T Consensus 77 -----k~~~ICe~-~fpt~IL~VrmNr~R---LvV~L-ee~IyIydI~~MklLhTI~t~~--~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 77 -----KKTTICEI-FFPTSILAVRMNRKR---LVVCL-EESIYIYDIKDMKLLHTIETTP--PNPKGLCALSPNNANCYL 144 (391)
T ss_pred -----cCceEEEE-ecCCceEEEEEccce---EEEEE-cccEEEEecccceeehhhhccC--CCccceEeeccCCCCceE
Confidence 55566555 346789999997642 45553 4569999999766544443321 233356777777766677
Q ss_pred EEEe--cCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCe-EEEEEcccCCcceeeecCCC--cce
Q 019059 184 VAAT--CESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESG-IHLWDLRMLKAPIQELPGHT--HWT 255 (346)
Q Consensus 184 ~~~~--~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~~v 255 (346)
+.-+ ..|.|.+||+.+-+++..+. .| +.+++|+++|. ++|++++.|+ ||+|.+.+ ++.+.+|+... ..|
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~I 221 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSI 221 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEE
Confidence 7654 36899999999999988887 67 99999999998 9999999996 79999987 66777776433 457
Q ss_pred EEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059 256 WAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286 (346)
Q Consensus 256 ~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 286 (346)
.+++|+|++ .+|++.|..++|+||.+....
T Consensus 222 ySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSPDS-QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECCCC-CeEEEecCCCeEEEEEecccc
Confidence 899999999 899999999999999998753
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=6.9e-15 Score=133.38 Aligned_cols=280 Identities=17% Similarity=0.179 Sum_probs=173.6
Q ss_pred EEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCc
Q 019059 56 LICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHD 135 (346)
Q Consensus 56 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 135 (346)
.....+..|...|..++.++...-++++ |+.||+|++|++.+...+. ...+...++......+.++...+.+..
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~Fvs---gS~DGtVKvW~~~k~~~~~--~s~rS~ltys~~~sr~~~vt~~~~~~~- 1112 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVS---GSDDGTVKVWNLRKLEGEG--GSARSELTYSPEGSRVEKVTMCGNGDQ- 1112 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEE---ecCCceEEEeeehhhhcCc--ceeeeeEEEeccCCceEEEEeccCCCe-
Confidence 4457788899999999998877444444 5899999999998543321 223334445445678999999999886
Q ss_pred EEEEecCCeEEEEEcCCCCCCceeee----cccCCCceeeEEEEeCCCC-C-cEEEEecCCeEEEEEccCCCccceee--
Q 019059 136 KLVSIDEENIFLWSLDCSNKNAQVQS----KQSSGMLHYLSGGAWDPHD-V-NAVAATCESSVQFWDLRSMGKTNSIE-- 207 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~-- 207 (346)
+++++.||.|++.+++..+....... ........-+...+|.... . .++.+..-+.|..||++.......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 66668899999999985321111111 1111111123333443322 2 46666678899999999876544433
Q ss_pred ccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec-CCCcceEEEEeCCCCC--cEEEEec--CCCeEEEE
Q 019059 208 HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP-GHTHWTWAVCCNPEYD--GFILSAG--TDSTVNLW 280 (346)
Q Consensus 208 ~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~v~~~~~~~--~~l~s~~--~d~~i~iw 280 (346)
..| |++++.+|.+. +++.|...|.+-+||+|- +.++.... ++..+++.+..+|..+ ...++++ ..+.|.+|
T Consensus 1193 ~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccccceeEEEecCCce-EEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 233 99999999998 999999999999999995 66666654 4557888888777653 4444444 47789999
Q ss_pred ecCCCCCCCCCcccccCCcccccccccc-ccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 281 LVSTSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++.++.... ..+..+..+......+.. .-+.+.-......+..-+ .++.+++.|..||.||..
T Consensus 1271 n~~~g~~~~-vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1271 NMETGLRQT-VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred ecccCcceE-EEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCC
Confidence 999852221 111111111000000000 000111111222232223 388999999999999964
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=4.9e-15 Score=129.69 Aligned_cols=237 Identities=10% Similarity=0.119 Sum_probs=149.6
Q ss_pred eEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc
Q 019059 43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK 122 (346)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (346)
.+.+++....+. ..+..+...+.+.+|+|+++.|+.+.+. +....|.+|++. .++. ..+....+.
T Consensus 185 ~l~i~D~~g~~~----~~lt~~~~~v~~p~wSpDg~~la~~s~~-~~~~~l~~~dl~---------~g~~-~~l~~~~g~ 249 (433)
T PRK04922 185 ALQVADSDGYNP----QTILRSAEPILSPAWSPDGKKLAYVSFE-RGRSAIYVQDLA---------TGQR-ELVASFRGI 249 (433)
T ss_pred EEEEECCCCCCc----eEeecCCCccccccCCCCCCEEEEEecC-CCCcEEEEEECC---------CCCE-EEeccCCCC
Confidence 466666543322 3344677789999999999998887432 234579999987 2222 223333445
Q ss_pred eEEEEeecCCCCcEEEEecCC--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CC--eEEEEEc
Q 019059 123 INCVLWWSSGRHDKLVSIDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ES--SVQFWDL 197 (346)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~ 197 (346)
..+..|+|+|+.++++.+.++ .|++||+.+++. ..+. .+.......+|+|+++.++.++. ++ .|+++|+
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt-----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLT-----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 567899999997666655444 699999986542 2211 11223456799999999888774 34 4777787
Q ss_pred cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC
Q 019059 198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD 274 (346)
Q Consensus 198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d 274 (346)
.+++.......+. ...++|+|+|+.++++...++ .|.+||+.. +. ...+. +........|+|+| ++|+..+.+
T Consensus 324 ~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~-~~~Lt-~~~~~~~p~~spdG-~~i~~~s~~ 399 (433)
T PRK04922 324 SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GS-VRTLT-PGSLDESPSFAPNG-SMVLYATRE 399 (433)
T ss_pred CCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CC-eEECC-CCCCCCCceECCCC-CEEEEEEec
Confidence 7665433222233 667899999994444433333 689999875 32 33443 23345567899999 766655542
Q ss_pred ---CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059 275 ---STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (346)
Q Consensus 275 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (346)
..|.++++.. .....+..+.+.+...+|+|
T Consensus 400 ~g~~~L~~~~~~g--------------------~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 400 GGRGVLAAVSTDG--------------------RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceEEEEEECCC--------------------CceEEcccCCCCCCCCccCC
Confidence 3577777753 34444544555677788887
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.71 E-value=1.9e-15 Score=116.48 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=108.8
Q ss_pred EEEEeecCCCCcEEEEec---------CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe--cCCeE
Q 019059 124 NCVLWWSSGRHDKLVSID---------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSV 192 (346)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i 192 (346)
..+.|+++|+++++.... -+...+|.++............. ..+|.+++|+|+++.+++.. .+..|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC---CCceEEEEECcCCCEEEEEEccCCccc
Confidence 467899999986665541 24566777754443333333222 22699999999999876654 46799
Q ss_pred EEEEccCCCccceeeccceeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEE
Q 019059 193 QFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL 269 (346)
Q Consensus 193 ~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~ 269 (346)
.+||++ ++.+..+....++.+.|+|+|+ ++++++ ..|.|.+||.++ ...+.... | ..++.++|+|+| ++|+
T Consensus 86 ~lyd~~-~~~i~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdG-r~~~ 159 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDG-RYLA 159 (194)
T ss_pred EEEcCc-ccEeEeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCC-CEEE
Confidence 999997 6666666543489999999999 566554 347899999996 44555554 3 357899999999 8888
Q ss_pred EecC------CCeEEEEecCC
Q 019059 270 SAGT------DSTVNLWLVST 284 (346)
Q Consensus 270 s~~~------d~~i~iwd~~~ 284 (346)
+++. |+.++||+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEeccceeccccEEEEEecC
Confidence 8764 78899999873
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.2e-13 Score=108.05 Aligned_cols=234 Identities=16% Similarity=0.189 Sum_probs=153.0
Q ss_pred ccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCC-----cceEEEE
Q 019059 22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGE-----SYGAAIW 96 (346)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~-----d~~i~vw 96 (346)
+.++.+...|++++ +.-.++++.++-+.... +....-.-.+..+-| ..++++.+. |+. ...|.||
T Consensus 11 vs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~-r~~~~~G~~~veMLf--R~N~laLVG--Gg~~pky~pNkviIW 80 (346)
T KOG2111|consen 11 VSFNQDHSCFAVAT-----DTGFRIYNCDPFKESAS-RQFIDGGFKIVEMLF--RSNYLALVG--GGSRPKYPPNKVIIW 80 (346)
T ss_pred EEEccCCceEEEEe-----cCceEEEecCchhhhhh-hccccCchhhhhHhh--hhceEEEec--CCCCCCCCCceEEEE
Confidence 66788888898875 44567787777432111 111111112222223 234555542 333 3569999
Q ss_pred ecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC-CCCceeeecccCCCceeeEEEE
Q 019059 97 QIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGA 175 (346)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~ 175 (346)
|=. ...++.++ ....+|.++.+.++. +++. ..+.|+||...+. +....+..... ...+.++.
T Consensus 81 DD~---------k~~~i~el-~f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~N---PkGlC~~~ 143 (346)
T KOG2111|consen 81 DDL---------KERCIIEL-SFNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRSN---PKGLCSLC 143 (346)
T ss_pred ecc---------cCcEEEEE-EeccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeecccC---CCceEeec
Confidence 933 45666666 457899999998762 3333 4789999998743 22222222221 11333333
Q ss_pred eCCCCCcEEEEe-cCCeEEEEEccCCCc-cceeeccc---eeEEEeCCCCCcEEEEecCCCe-EEEEEcccCCcceeeec
Q 019059 176 WDPHDVNAVAAT-CESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLLVTAADESG-IHLWDLRMLKAPIQELP 249 (346)
Q Consensus 176 ~~~~~~~l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~ 249 (346)
-+.+...|+.-+ .-|.|.|-|+...+. ...+..+| |.|++.+.+|. ++|+++..|+ |||||.++ +.++.+++
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~-g~~l~E~R 221 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTED-GTLLQELR 221 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCC-CcEeeeee
Confidence 332333343333 468999999987665 23333467 99999999998 9999999997 79999998 55777776
Q ss_pred C--CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059 250 G--HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (346)
Q Consensus 250 ~--~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~ 285 (346)
. ....|.+++|||+. .+||++|+.|+|+|+.++..
T Consensus 222 RG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 222 RGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecC
Confidence 3 33679999999999 99999999999999999864
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=6.5e-15 Score=128.93 Aligned_cols=214 Identities=12% Similarity=0.108 Sum_probs=134.0
Q ss_pred ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
..|.+||.+ +...+.+..+...+.+..|+|||+.+++++. .+..|++||+.++... .+. ...+
T Consensus 184 ~~l~i~D~~----------g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~--~~~g-- 248 (433)
T PRK04922 184 YALQVADSD----------GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVA--SFRG-- 248 (433)
T ss_pred EEEEEECCC----------CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Eec--cCCC--
Confidence 468888875 2333455567778999999999997555552 2457999999865431 111 1112
Q ss_pred eeeEEEEeCCCCCcEEEE-ecCC--eEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCe--EEEEEcccC
Q 019059 169 HYLSGGAWDPHDVNAVAA-TCES--SVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESG--IHLWDLRML 241 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~ 241 (346)
.....+|+|+++.++.. +.++ .|++||+.+++... +.... ...++|+|+++.++++...+|. |+++|+..
T Consensus 249 -~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~- 325 (433)
T PRK04922 249 -INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG- 325 (433)
T ss_pred -CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-
Confidence 34577999999987654 4444 69999998876433 33222 5688999999854555445555 55566654
Q ss_pred CcceeeecCCCcceEEEEeCCCCCcEEEEecCCC---eEEEEecCCCCCCCCCcccccCCccccccccccccccccceee
Q 019059 242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY 318 (346)
Q Consensus 242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (346)
+ ....+..+......++|+|+| .+|+..+.++ .|.+||+.+ ++.. .+.. .....
T Consensus 326 g-~~~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~-------------------g~~~-~Lt~-~~~~~ 382 (433)
T PRK04922 326 G-SAERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLST-------------------GSVR-TLTP-GSLDE 382 (433)
T ss_pred C-CeEEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCC-------------------CCeE-ECCC-CCCCC
Confidence 2 233333333445578999999 7776654332 699999876 3332 2322 22345
Q ss_pred EEEeCCCCCcEEEEeecC--CeEEEeeec
Q 019059 319 GLAWSSREPWIFASLSYD--GRVRNHMLE 345 (346)
Q Consensus 319 ~~~~~~~~~~~l~s~~~d--~~v~vw~~~ 345 (346)
...|+|+|+.++++.... ..+.+++++
T Consensus 383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 383 SPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 679999998444443332 346666664
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=8.8e-15 Score=127.68 Aligned_cols=240 Identities=11% Similarity=0.111 Sum_probs=143.9
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG 121 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (346)
.++++++....+ . ..+..+...+.+.+|+|+++.|+.+.+. +....|.+||+. .++.. .+....+
T Consensus 176 ~~L~~~D~dG~~--~--~~l~~~~~~v~~p~wSPDG~~la~~s~~-~~~~~I~~~dl~---------~g~~~-~l~~~~g 240 (427)
T PRK02889 176 YQLQISDADGQN--A--QSALSSPEPIISPAWSPDGTKLAYVSFE-SKKPVVYVHDLA---------TGRRR-VVANFKG 240 (427)
T ss_pred cEEEEECCCCCC--c--eEeccCCCCcccceEcCCCCEEEEEEcc-CCCcEEEEEECC---------CCCEE-EeecCCC
Confidence 355555543321 1 2344677889999999999998876422 223569999987 33322 2333345
Q ss_pred ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCeEEEEEc--c
Q 019059 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWDL--R 198 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~--~ 198 (346)
.+....|+|||+.++++.+.++...+|.++........... +........|+|||+.++..+. ++...+|.+ .
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC
Confidence 56789999999976666666777666665422111111111 1223456789999999887764 455555554 4
Q ss_pred CCCccceeeccc-eeEEEeCCCCCcEEEEecCCC---eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC-
Q 019059 199 SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES---GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT- 273 (346)
Q Consensus 199 ~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~- 273 (346)
+++.......+. ....+|+|+|+ .++..+.++ .|.+||+.... ...+.. ......+.|+|+| +.|+..+.
T Consensus 317 ~g~~~~lt~~g~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~--~~~lt~-~~~~~~p~~spdg-~~l~~~~~~ 391 (427)
T PRK02889 317 GGAAQRVTFTGSYNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQ--VTALTD-TTRDESPSFAPNG-RYILYATQQ 391 (427)
T ss_pred CCceEEEecCCCCcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCC--eEEccC-CCCccCceECCCC-CEEEEEEec
Confidence 444322222233 55789999999 555444333 69999987632 333432 2344678999999 66655554
Q ss_pred CCe--EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059 274 DST--VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 274 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (346)
.+. +.+.+.. +.....+..+.+.+...+|+|-
T Consensus 392 ~g~~~l~~~~~~--------------------g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 392 GGRSVLAAVSSD--------------------GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEECC--------------------CCceEEeecCCCCCCCCccCCC
Confidence 333 4444553 3444445555566788889874
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.1e-15 Score=125.42 Aligned_cols=239 Identities=12% Similarity=0.125 Sum_probs=166.7
Q ss_pred eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-CC-ceEEEEeecCCCCcEE
Q 019059 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VG-KINCVLWWSSGRHDKL 137 (346)
Q Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~-~i~~~~~~~~~~~~~~ 137 (346)
+-+.|+..-+.|..+|||++++++ |-....|++||+. . ....+..| .. .|.-.-.+.|-.. ++
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAt---G~YKP~ikvydla---------n--LSLKFERhlDae~V~feiLsDD~SK-~v 110 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLAT---GTYKPQIKVYDLA---------N--LSLKFERHLDAEVVDFEILSDDYSK-SV 110 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEe---cccCCceEEEEcc---------c--ceeeeeecccccceeEEEeccchhh-he
Confidence 345788889999999999999998 5677899999998 2 32344455 33 3444444444443 33
Q ss_pred EEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEE
Q 019059 138 VSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVD 215 (346)
Q Consensus 138 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~ 215 (346)
.-..|..|.+...... ...+..+. .-..++++.-..-|+.++....|+-+++..|.-+..+.... ++++.
T Consensus 111 ~L~~DR~IefHak~G~--hy~~RIP~------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 111 FLQNDRTIEFHAKYGR--HYRTRIPK------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS 182 (703)
T ss_pred EeecCceeeehhhcCe--eeeeecCc------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence 3345778776554311 11221111 34566666555557777777789999999999877776443 99999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccCCcceeeec------CCCc-----ceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP------GHTH-----WTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~-----~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.++... +|++|+.+|.|..||.|. +..+..+. .|.+ .|+++.|+.+| -.+++|..+|.+.|||++.
T Consensus 183 in~~hg-Lla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 183 INEEHG-LLACGTEDGVVEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred ecCccc-eEEecccCceEEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEccc
Confidence 999988 999999999999999997 43444332 2333 39999999999 9999999999999999998
Q ss_pred CCCCCCCcccccCCcccccccccc-ccccccceeeEEEeCCCCC-cEEEEeecCCeEEEeee
Q 019059 285 SNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAWSSREP-WIFASLSYDGRVRNHML 344 (346)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~v~vw~~ 344 (346)
.+++. .-.+..-+|..+.|.+.+. ..+++. ....++||+-
T Consensus 260 -------------------~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 260 -------------------SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred -------------------CCceeecccCCccceeeecccccCCCceEEec-chHHhhhccc
Confidence 44433 3334456899999987632 244444 3577899974
No 227
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=6.2e-15 Score=129.38 Aligned_cols=236 Identities=11% Similarity=0.125 Sum_probs=169.6
Q ss_pred EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC--cEEEEecCCeEEE
Q 019059 70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH--DKLVSIDEENIFL 147 (346)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~d~~i~v 147 (346)
...|++|+++++.. .+..|.||... ++.++..+..|..++..+.+.|.... .+++++.+|.|++
T Consensus 21 ~avfSnD~k~l~~~-----~~~~V~VyS~~---------Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC-----TGNFVKVYSTA---------TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred ccccccCCcEEEEe-----eCCEEEEEecc---------hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence 35689999999886 45599999998 88999999999999999999887663 2445678999999
Q ss_pred EEcCCCCCCceeeecc----------------------------------c--------------------CCCceeeEE
Q 019059 148 WSLDCSNKNAQVQSKQ----------------------------------S--------------------SGMLHYLSG 173 (346)
Q Consensus 148 wd~~~~~~~~~~~~~~----------------------------------~--------------------~~~~~~v~~ 173 (346)
||...+.......... . ..+. .-..
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~ 165 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKS 165 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCcc
Confidence 9987653222111100 0 0000 0122
Q ss_pred EEeCCCCCcEEEEecCCeEEEEEccCCCcc---ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEc-c--cCCcc
Q 019059 174 GAWDPHDVNAVAATCESSVQFWDLRSMGKT---NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL-R--MLKAP 244 (346)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~--~~~~~ 244 (346)
+.+++.+... ....+..+.+|....+... +.....| +++.+++|.++ +++++..||.|.+|.- . .....
T Consensus 166 I~~~~~ge~~-~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 166 IVDNNSGEFK-GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred EEEcCCceEE-EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEecccccccccc
Confidence 3334333322 2223456778887765411 1112223 79999999998 8999999999999953 2 12234
Q ss_pred eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (346)
Q Consensus 245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (346)
.+.+.-|...|+++.|+++| .+|++|+..+.+.+|.+.+ ++ .+-++.-.++|..+.++|
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T-------------------~~-kqfLPRLgs~I~~i~vS~ 302 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLET-------------------GK-KQFLPRLGSPILHIVVSP 302 (792)
T ss_pred ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecC-------------------CC-cccccccCCeeEEEEEcC
Confidence 56677799999999999999 9999999999999999998 44 444555677899999999
Q ss_pred CCCcEEEEeecCCeEEEeee
Q 019059 325 REPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 325 ~~~~~l~s~~~d~~v~vw~~ 344 (346)
|+. +.+...+|..|.+-..
T Consensus 303 ds~-~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 303 DSD-LYSLVLEDNQIHLIKA 321 (792)
T ss_pred CCC-eEEEEecCceEEEEec
Confidence 997 7788888999887654
No 228
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=138.29 Aligned_cols=273 Identities=13% Similarity=0.221 Sum_probs=192.4
Q ss_pred EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEe
Q 019059 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQ 97 (346)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~ 97 (346)
+|.+.-++..+..++.|+ .+..+.+|..... .......||.+.|++++.+.++..+++ ++.|..|++|.
T Consensus 192 aVyca~fDrtg~~Iitgs----dd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaa----aS~D~vIrvWr 260 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGS----DDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAA----ASNDKVIRVWR 260 (1113)
T ss_pred heeeeeeccccceEeecC----ccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhh----cccCceEEEEe
Confidence 455555676777777663 5667777774432 344677899999999999987766666 47999999999
Q ss_pred cCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc-cCCCceeeEEEEe
Q 019059 98 IPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ-SSGMLHYLSGGAW 176 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~ 176 (346)
+. .+.++..+.+|++.|++++|+|- .+++.||++++||.+-. ...+.... ......-+.++.|
T Consensus 261 l~---------~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 261 LP---------DGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred cC---------CCchHHHHhccccceeeeccCcc-----ccCCCCCceEecccccc--ccccCCCCCCcccccceeeeec
Confidence 98 78999999999999999999994 36678999999998711 11111111 0111234566677
Q ss_pred CCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE
Q 019059 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW 256 (346)
Q Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 256 (346)
...+...++++.|+.-..|.+......... +.-+.++.+-....+++-.+-.+.+|++-. +...+.+.+|...+.
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~----lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~y 399 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNL----LIFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEVY 399 (1113)
T ss_pred cccccccccccCCcccccchhhHhhhhccc----eEEEeccccccccceeeeeeeEeeeeeccc-chhhhhhccccccee
Confidence 777777888888887777765432211000 111222222222566677778899999987 667888899999999
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc-ccccceeeEEEeCCCCCcEEEEeec
Q 019059 257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY-SDYEDSVYGLAWSSREPWIFASLSY 335 (346)
Q Consensus 257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (346)
.+.++|.++....+++.||+..|||+-. +.+++.. .+|. .+.+-+||++|. .++....
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~e-------------------g~pik~y~~gh~-kl~d~kFSqdgt-s~~lsd~ 458 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWE-------------------GIPIKHYFIGHG-KLVDGKFSQDGT-SIALSDD 458 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeeccc-------------------CCcceeeecccc-eeeccccCCCCc-eEecCCC
Confidence 9999999977788999999999999987 4444433 3444 467788999987 5666666
Q ss_pred CCeEEEee
Q 019059 336 DGRVRNHM 343 (346)
Q Consensus 336 d~~v~vw~ 343 (346)
-|.++|..
T Consensus 459 hgql~i~g 466 (1113)
T KOG0644|consen 459 HGQLYILG 466 (1113)
T ss_pred CCceEEec
Confidence 67777654
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=6.4e-17 Score=132.02 Aligned_cols=193 Identities=14% Similarity=0.109 Sum_probs=163.7
Q ss_pred CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC
Q 019059 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200 (346)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (346)
-.-..+.++.+|++ ++.++..|.|..+|..+.....++...+ .|.++.|..+.+++++ .....++|||-. |
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~E------tv~Dv~~LHneq~~AV-AQK~y~yvYD~~-G 200 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVME------TVRDVTFLHNEQFFAV-AQKKYVYVYDNN-G 200 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhh------hhhhhhhhcchHHHHh-hhhceEEEecCC-C
Confidence 34578899999997 7777789999999999877655555433 7889999876665554 567789999955 7
Q ss_pred Cccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059 201 GKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 279 (346)
Q Consensus 201 ~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i 279 (346)
..++.+..-. |..+.|-|..- +|++++..|.++.-|+.. ++.+..+..-.+.+..++-+|-+ ..+-+|...|+|.+
T Consensus 201 tElHClk~~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~-GklVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSl 277 (545)
T KOG1272|consen 201 TELHCLKRHIRVARLEFLPYHF-LLVAASEAGFLKYQDVST-GKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSL 277 (545)
T ss_pred cEEeehhhcCchhhhcccchhh-eeeecccCCceEEEeech-hhhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEe
Confidence 7777776333 99999999884 999999999999999998 66788888778889999999999 89999999999999
Q ss_pred EecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
|.... .+++..+..|.++|.+|++.++|. ++||.+.|..++|||+.
T Consensus 278 WSP~s-------------------kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 278 WSPNS-------------------KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLR 323 (545)
T ss_pred cCCCC-------------------cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeec
Confidence 99998 888888889999999999999997 99999999999999985
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=6.7e-15 Score=113.50 Aligned_cols=148 Identities=15% Similarity=0.304 Sum_probs=105.4
Q ss_pred EEEEeCCCCCcEEEEec---C-------CeEEEEEccCC-Cccceee--ccc-eeEEEeCCCCCcEEE-EecCCCeEEEE
Q 019059 172 SGGAWDPHDVNAVAATC---E-------SSVQFWDLRSM-GKTNSIE--HAH-VRNVDYDTKKKHLLV-TAADESGIHLW 236 (346)
Q Consensus 172 ~~~~~~~~~~~l~~~~~---d-------~~i~i~d~~~~-~~~~~~~--~~~-v~~~~~~~~~~~~l~-~~~~dg~i~i~ 236 (346)
..+.|+|+|.+|++-.. | +...+|.++.. .....+. ... |.+++|+|++..+++ .|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999988776543 1 33555655432 2333332 222 999999999984433 34567799999
Q ss_pred EcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC---CCeEEEEecCCCCCCCCCcccccCCccccccccccccccc
Q 019059 237 DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY 313 (346)
Q Consensus 237 d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (346)
|++ ..++..+. ...++.+.|+|+| ++|++++. .|.|.+||++. .+.+.... |
T Consensus 89 d~~--~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~-------------------~~~i~~~~-~ 143 (194)
T PF08662_consen 89 DVK--GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRK-------------------KKKISTFE-H 143 (194)
T ss_pred cCc--ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCC-------------------CEEeeccc-c
Confidence 997 44566654 5678899999999 88888764 46799999998 67776654 3
Q ss_pred cceeeEEEeCCCCCcEEEEee------cCCeEEEeeecC
Q 019059 314 EDSVYGLAWSSREPWIFASLS------YDGRVRNHMLEK 346 (346)
Q Consensus 314 ~~~v~~~~~~~~~~~~l~s~~------~d~~v~vw~~~~ 346 (346)
. .++.++|+|+|+ +|+++. .|..++||+.+|
T Consensus 144 ~-~~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 144 S-DATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred C-cEEEEEEcCCCC-EEEEEEeccceeccccEEEEEecC
Confidence 3 378999999998 555554 388899999875
No 231
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=6.1e-14 Score=127.41 Aligned_cols=294 Identities=14% Similarity=0.146 Sum_probs=184.2
Q ss_pred CCCCeEEEEEecCCCCe---EEEee-eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeee
Q 019059 39 KEENEVHLLRLSSGGTE---LICEG-LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA 114 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~---~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 114 (346)
+.+|.|.+|+.....+. ..... ...-...+.++.+.+.+..++++ +.||.|++.+++.....+. .....+
T Consensus 1068 S~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~----t~DG~v~~~~id~~~~~~~--~~~~~r 1141 (1431)
T KOG1240|consen 1068 SDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS----TKDGSVRVLRIDHYNVSKR--VATQVR 1141 (1431)
T ss_pred cCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE----cCCCeEEEEEccccccccc--eeeeee
Confidence 57899999998764332 22222 22245789999999999888885 6999999999983211111 111112
Q ss_pred eeecc-CC-ceEEEEeecCCCC-cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCe
Q 019059 115 ALDAH-VG-KINCVLWWSSGRH-DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS 191 (346)
Q Consensus 115 ~~~~~-~~-~i~~~~~~~~~~~-~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 191 (346)
....+ .+ -|..-+|...... .++.+..-+.|..||++..............| .|++++.+|.+..++.|+..|.
T Consensus 1142 i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG---~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1142 IPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG---LVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred cccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc---ceeEEEecCCceEEEEecCCce
Confidence 22222 22 3334445443333 45666667899999998766555554444333 8999999999999999999999
Q ss_pred EEEEEccCCCccceeeccc---eeEEEeCCCC---CcEEEEec-CCCeEEEEEcccCCcceeeecCC-------------
Q 019059 192 VQFWDLRSMGKTNSIEHAH---VRNVDYDTKK---KHLLVTAA-DESGIHLWDLRMLKAPIQELPGH------------- 251 (346)
Q Consensus 192 i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~---~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~------------- 251 (346)
+.+||+|-+.++.....++ ++.+..+|-. ...+.+++ ..+.|.+|++.+. .....+...
T Consensus 1219 l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g-~~~~vl~~s~~~p~ls~~~Ps~ 1297 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG-LRQTVLWASDGAPILSYALPSN 1297 (1431)
T ss_pred EEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC-cceEEEEcCCCCcchhhhcccc
Confidence 9999999888888777555 6666666543 32444444 5678999999874 333333211
Q ss_pred ------CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC----------------cccccCCc-------cc-
Q 019059 252 ------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP----------------SESLVESP-------NQ- 301 (346)
Q Consensus 252 ------~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------~~~~~~~~-------~~- 301 (346)
.-......+...+ .++.+|+.|..|+.||......-... .......+ .+
T Consensus 1298 ~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~ 1376 (1431)
T KOG1240|consen 1298 DARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQ 1376 (1431)
T ss_pred cCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhh
Confidence 0111122233333 68999999999999998765321000 00000000 00
Q ss_pred -------------cccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 302 -------------RANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 302 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
........-..|..+|+++++......+|++++.||.|+||.
T Consensus 1377 tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1377 TVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000001111247788999998877667999999999999994
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.9e-14 Score=125.52 Aligned_cols=209 Identities=12% Similarity=0.179 Sum_probs=128.2
Q ss_pred ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--CCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
..|.++|.+ +...+.+..+...+.+.+|+|||+.+++++.. ...|.+||+.+++.. .+. ...+
T Consensus 176 ~~L~~~D~d----------G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~--~~~g-- 240 (427)
T PRK02889 176 YQLQISDAD----------GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVA--NFKG-- 240 (427)
T ss_pred cEEEEECCC----------CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-Eee--cCCC--
Confidence 456666654 33334455677889999999999975555532 356999999876432 221 1112
Q ss_pred eeeEEEEeCCCCCcEEEE-ecCCeEEEE--EccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059 169 HYLSGGAWDPHDVNAVAA-TCESSVQFW--DLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~-~~d~~i~i~--d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 243 (346)
.....+|+||++.++.. +.++...+| |+..+. ...+.... .....|+|+|+.+++++..++...+|.+.....
T Consensus 241 -~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 241 -SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred -CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 45678999999988754 556665555 554443 33333222 667899999995555555556667776543222
Q ss_pred ceeeecCCCcceEEEEeCCCCCcEEEEecCCC---eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL 320 (346)
Q Consensus 244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (346)
....+...........|+|+| ++|+..+.++ .|.+||+.. ++.. .+... ......
T Consensus 319 ~~~~lt~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~-------------------g~~~-~lt~~-~~~~~p 376 (427)
T PRK02889 319 AAQRVTFTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLAT-------------------GQVT-ALTDT-TRDESP 376 (427)
T ss_pred ceEEEecCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCC-------------------CCeE-EccCC-CCccCc
Confidence 233333233334567899999 7777665543 699999986 3322 22222 224678
Q ss_pred EeCCCCCcEEEEeecCCe
Q 019059 321 AWSSREPWIFASLSYDGR 338 (346)
Q Consensus 321 ~~~~~~~~~l~s~~~d~~ 338 (346)
.|+|+++.++++....+.
T Consensus 377 ~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 377 SFAPNGRYILYATQQGGR 394 (427)
T ss_pred eECCCCCEEEEEEecCCC
Confidence 999999855554444444
No 233
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.68 E-value=2.7e-14 Score=110.39 Aligned_cols=301 Identities=15% Similarity=0.106 Sum_probs=187.2
Q ss_pred eeEeeeccCCCCcceEEEeecccCCC--------CeEEEEEecCCCCeEEEeeeeccccceEEeeecC---CCCceEEEE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEE--------NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCP---FDQRIFSTV 84 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~~ 84 (346)
+-+++..+...-...+++|++.+.+. +.++++++.+.+..-...........+..+.|+. ++...++-
T Consensus 12 ~~~~~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~- 90 (339)
T KOG0280|consen 12 ADPVPICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLD- 90 (339)
T ss_pred cCCCCccccccccceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeee-
Confidence 34455555555556889998876544 5677777766432111111112335677888863 33323332
Q ss_pred eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059 85 FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS 164 (346)
Q Consensus 85 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 164 (346)
....|.|.++....... .....++...+.......++.|++.+.. ++++-.+|.+.+-+..... ....+..
T Consensus 91 --a~a~G~i~~~r~~~~~s---s~~L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~---le~vq~w 161 (339)
T KOG0280|consen 91 --AHARGQIQLYRNDEDES---SVHLRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGSISGVYETEMV---LEKVQTW 161 (339)
T ss_pred --ccccceEEEEeecccee---eeeecccchhhhhheeeeEEEeeccCce-EEEEcCCCcEEEEecceee---eeecccc
Confidence 25778999998762111 0011111111111223567889999886 6666557888855543221 1122234
Q ss_pred CCCceeeEEEEeCCCCC-cEEEEecCCeEEEEEccCCC-ccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059 165 SGMLHYLSGGAWDPHDV-NAVAATCESSVQFWDLRSMG-KTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLR 239 (346)
Q Consensus 165 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 239 (346)
+.|..++....|+...+ .+++|+.|+.+..||+|..+ .+..-..-| |.+|.-+|..+..+++|+.|-.|++||.|
T Consensus 162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 56777888888876554 56788899999999999443 222212233 89999998877799999999999999999
Q ss_pred cCCcceeeecCCCcceEEEEeCCCCCc-EEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceee
Q 019059 240 MLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVY 318 (346)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (346)
+.++|+..-. -.+.|..+.++|.-.. +|+++-.+| .+|-+.+....+ + .......+.|.+-..
T Consensus 242 nm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e-~-------------~~~~~s~~~hdSl~Y 305 (339)
T KOG0280|consen 242 NMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE-F-------------QIVLPSDKIHDSLCY 305 (339)
T ss_pred cccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc-h-------------heeeeccccccceee
Confidence 8888876654 3589999999997533 344554454 778777752111 0 124445667888888
Q ss_pred EEEeCCCCCcEEEEee-cCCeEE-Eee
Q 019059 319 GLAWSSREPWIFASLS-YDGRVR-NHM 343 (346)
Q Consensus 319 ~~~~~~~~~~~l~s~~-~d~~v~-vw~ 343 (346)
.-.|..... +||+++ .|+.++ +|-
T Consensus 306 G~DWd~~~~-~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 306 GGDWDSKDS-FLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccccc-eeeeeeccccceeeeee
Confidence 888865543 788876 677755 773
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.3e-15 Score=122.21 Aligned_cols=262 Identities=12% Similarity=0.107 Sum_probs=184.4
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCC-CcE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGR-HDK 136 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~ 136 (346)
..+..|++.|+.+.|...|..|++ |+.|..|.+||+. ...+...+ .+|...|....|.|... .-+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~S----gSDD~~vv~WdW~---------~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLAS----GSDDLQVVVWDWV---------SGSPKLSFESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred hcccCCCCccceeeecccCceeec----cCccceEEeehhh---------ccCcccccccccccchhhhhccCCCCCcCc
Confidence 567889999999999999988887 5899999999998 44444444 57888888888887533 236
Q ss_pred EEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-EEEEecCCeEEEEEccCCCccceeec--cc---
Q 019059 137 LVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAATCESSVQFWDLRSMGKTNSIEH--AH--- 210 (346)
Q Consensus 137 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~--~~--- 210 (346)
+.++.||.+++=.+......... .....|...+..++.-|+..+ +.+++.|+.+.-+|++++.+...+.. .+
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t--~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENT--KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred eeccccCceeeeeeccccceecc--eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 66688999999877644332222 222346678999999888766 77788899999999998765444331 11
Q ss_pred ---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-----ceeeecC------CCcceEEEEeCCCCCcEEEEecCCCe
Q 019059 211 ---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA-----PIQELPG------HTHWTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 211 ---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~------~~~~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
...++.+|...+.+++++.|-.+++||.|.... ++..+.. ....|++++++.++..+|++-. |-.
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~ 359 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DED 359 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccc
Confidence 789999999998999999999999999886432 1233322 2356899999988756666655 556
Q ss_pred EEEEecCCCCCCCCCcccccCCcccccccccc-ccccccc--eeeEEEe-CCCCCcEEEEeecCCeEEEeee
Q 019059 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLN-SYSDYED--SVYGLAW-SSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~-~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
|+++.-......+..... +. ...+. .+++|.. .|..+-| -|... ++++||.-|.|.||+-
T Consensus 360 IYLF~~~~~~G~~p~~~s----~~---~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSS----PR---EQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDK 423 (559)
T ss_pred eEEeccccccCCCCCCCc----ch---hhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEec
Confidence 888854442211111100 00 12223 3778864 4777765 46665 8999999999999984
No 235
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.67 E-value=5.1e-14 Score=111.21 Aligned_cols=314 Identities=16% Similarity=0.252 Sum_probs=193.4
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC--eEEEeeeecc------------ccceEEeeecCCCCceE
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSH------------PNEIWDLSSCPFDQRIF 81 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h------------~~~v~~~~~~~~~~~l~ 81 (346)
+..++.+.++-.+.++++|. ..|.+.++.-....+ ......+..| ...|+.++|.+++..-.
T Consensus 25 adiis~vef~~~Ge~LatGd----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGD----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hcceeeEEeecccceEeecC----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 45677788888999999984 567777765554332 1111222223 35688999998765322
Q ss_pred EEEeecCCcceEEEEecCcccCCCCC--------------------------ccceeeeee-eccCCceEEEEeecCCCC
Q 019059 82 STVFSTGESYGAAIWQIPELYGQLNS--------------------------PQLERIAAL-DAHVGKINCVLWWSSGRH 134 (346)
Q Consensus 82 ~~~~~~~~d~~i~vw~~~~~~~~~~~--------------------------~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 134 (346)
... ..+|.+|++|.+.+....... ....+.+.+ .+|+.-|.+++++.|..
T Consensus 101 FLl--stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 101 FLL--STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred EEE--ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 111 359999999998755322100 001111111 35788899999999988
Q ss_pred cEEEEecCCeEEEEEcCCCCCCceeeecc---cCCCceeeEEEEeCCCCCcEEE-EecCCeEEEEEccCCCcc----cee
Q 019059 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSMGKT----NSI 206 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~----~~~ 206 (346)
.+.+++|=.|.+|+++...+...+..-. ......-|++..|+|....+++ .+..|+|++.|++....- ..+
T Consensus 178 -t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 178 -TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred -eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 5666678999999998654444333222 1122335788899997666554 456899999999943210 111
Q ss_pred e-----------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc------------ce---EE
Q 019059 207 E-----------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH------------WT---WA 257 (346)
Q Consensus 207 ~-----------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------~v---~~ 257 (346)
. .+- |..+.|+++|+ ++++-.. -+|++||+....+|+.++.-|.. .| ..
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 1 001 88999999998 5554332 58999999776778888876652 11 35
Q ss_pred EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCC-ccccccccccccc--------------cccceeeEEEe
Q 019059 258 VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVES-PNQRANSLLNSYS--------------DYEDSVYGLAW 322 (346)
Q Consensus 258 v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~v~~~~~ 322 (346)
++|+.++ .+++||+..+.+++++...+..+.......... +.....++..... .....+...+|
T Consensus 335 c~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aW 413 (433)
T KOG1354|consen 335 CSWSGND-SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAW 413 (433)
T ss_pred EEEcCCc-ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhcc
Confidence 7899988 899999999999999976654433222211111 1111111111110 11234667899
Q ss_pred CCCCCcEEEEeecCCeEEEe
Q 019059 323 SSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 323 ~~~~~~~l~s~~~d~~v~vw 342 (346)
+|... .+|.+.. +.+++|
T Consensus 414 hp~en-~ia~aat-nnlyif 431 (433)
T KOG1354|consen 414 HPKEN-SIAVAAT-NNLYIF 431 (433)
T ss_pred CCccc-eeeeeec-CceEEe
Confidence 99887 6665554 456665
No 236
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.9e-15 Score=119.40 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=133.5
Q ss_pred eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCC--CCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeE
Q 019059 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSN--KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV 192 (346)
Q Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 192 (346)
.+.+|.+.|.++.|+.+++. ++++++|..+++|+++..- ...+.+......|...|.+++|+.....+++|+.+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 45689999999999999873 6677889999999987421 11111111123356789999999988999999999999
Q ss_pred EEEEccCCCccceeeccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee--cCCCcceEEEEeCCCCCc
Q 019059 193 QFWDLRSMGKTNSIEHAH----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL--PGHTHWTWAVCCNPEYDG 266 (346)
Q Consensus 193 ~i~d~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~ 266 (346)
.+.|+.+.+.+..+.... |..+..+|..+ .|++.+.++.|.+||.|....++..+ .........+.|+|..+.
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 999999998877765433 99999999976 99999999999999999744344333 234456788999999999
Q ss_pred EEEEecCCCeEEEEecCC
Q 019059 267 FILSAGTDSTVNLWLVST 284 (346)
Q Consensus 267 ~l~s~~~d~~i~iwd~~~ 284 (346)
+|++.+..+-+-+||++.
T Consensus 209 Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRM 226 (609)
T ss_pred eEEeccccCCCCceeecc
Confidence 999999999999999997
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.7e-14 Score=115.56 Aligned_cols=205 Identities=14% Similarity=0.122 Sum_probs=151.1
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC--C
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--E 143 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~ 143 (346)
+.|..++.. +..|+++ -.+|.+++|........ ..++..+..+ ..+..+.-++..++++++||.. .
T Consensus 106 ~~I~gl~~~--dg~Litc----~~sG~l~~~~~k~~d~h-----ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 106 KSIKGLKLA--DGTLITC----VSSGNLQVRHDKSGDLH-----SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred ccccchhhc--CCEEEEE----ecCCcEEEEeccCCccc-----cccceeeecC-CceeeeccCCCCCceEecCchhccc
Confidence 445454443 3455554 37889999998732110 2333344333 4577888888888877777877 8
Q ss_pred eEEEEEcCCCCCCceeeecccC----CCceeeEEEEeCCC--CCcEEEEecCCeEEEEEccCCC-ccceeeccc--eeEE
Q 019059 144 NIFLWSLDCSNKNAQVQSKQSS----GMLHYLSGGAWDPH--DVNAVAATCESSVQFWDLRSMG-KTNSIEHAH--VRNV 214 (346)
Q Consensus 144 ~i~vwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~--v~~~ 214 (346)
.+.+||++..++.......... ...-.++++.|.+. ...+++++.-+.+++||.+.++ ++..+.... ++++
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 9999999976443332221110 01224678889887 6779999999999999999765 555555333 9999
Q ss_pred EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
...|.++ .+++|..-+.+..||+|........+.+..+.|++|..+|.. .++++++.|..|||+|+.+
T Consensus 254 ~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 254 GLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence 9999998 899999999999999998555555588899999999999999 9999999999999999998
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=5.7e-15 Score=122.89 Aligned_cols=199 Identities=12% Similarity=0.166 Sum_probs=140.3
Q ss_pred eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEe-----CCCCCcEEEEecCCeEEEEEc
Q 019059 123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW-----DPHDVNAVAATCESSVQFWDL 197 (346)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~i~d~ 197 (346)
+.....+-.|+++.+.- ...+++|+.+........+.+...... ...+..| .|.+--++.+-.-|.+.+.|.
T Consensus 126 ~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~pi~k~~y~gt-~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSKPIDKREYKGT-SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeeccccCCCCEEEEec--CCeEEEEEccCcchhccchhhhcccCC-CCceecccccccCCCCcceEEeeccCceEEecc
Confidence 44555555666533333 467888888753333222222111001 2233333 455666888888899999998
Q ss_pred cCCCccceeecc-----c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---------------------------cc
Q 019059 198 RSMGKTNSIEHA-----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---------------------------AP 244 (346)
Q Consensus 198 ~~~~~~~~~~~~-----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------~~ 244 (346)
...+..+.+... . ++++.|-|.++.+++++..+|.++++|..... .|
T Consensus 203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP 282 (636)
T KOG2394|consen 203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP 282 (636)
T ss_pred hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc
Confidence 764322222211 1 99999999988889999999999999764211 12
Q ss_pred eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC
Q 019059 245 IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS 324 (346)
Q Consensus 245 ~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 324 (346)
+..+..-+..|+..+|+||| .+||+.+.||.+||||..+ .+++..++..-+...|++|||
T Consensus 283 v~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt-------------------~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDT-------------------QELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccH-------------------HHHHHHHHhhccceEEEEEcC
Confidence 33333344678899999999 9999999999999999998 777777777778899999999
Q ss_pred CCCcEEEEeecCCeEEEeeec
Q 019059 325 REPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 325 ~~~~~l~s~~~d~~v~vw~~~ 345 (346)
||+ ++++|++|-.|.||.++
T Consensus 343 DGK-yIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 343 DGK-YIVTGGEDDLVTVWSFE 362 (636)
T ss_pred Ccc-EEEecCCcceEEEEEec
Confidence 998 99999999999999875
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.65 E-value=1.8e-12 Score=110.02 Aligned_cols=256 Identities=11% Similarity=0.141 Sum_probs=161.1
Q ss_pred eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEE-eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059 20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELIC-EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (346)
.++..+++...+.+........+.|..+.+.++...+.. ............++++|++++|+++. -.++.|.++++
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van---y~~g~v~v~~l 116 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN---YGGGSVSVFPL 116 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE---TTTTEEEEEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE---ccCCeEEEEEc
Confidence 345567777777766443336789999999988444433 33332445667899999999999985 45778999999
Q ss_pred CcccCCCCCccceeeeeee----------ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 99 PELYGQLNSPQLERIAALD----------AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
.... ........+. .......++.|+|++++++++.-....|.+|+++................-
T Consensus 117 ~~~g-----~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 117 DDDG-----SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp CTTS-----EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred cCCc-----ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 7310 0111111110 123457899999999975555544569999999865422211111111122
Q ss_pred eeeEEEEeCCCCCcEEEEec-CCeEEEEEcc--CCCc--cceee---c---c--ceeEEEeCCCCCcEEEEecCCCeEEE
Q 019059 169 HYLSGGAWDPHDVNAVAATC-ESSVQFWDLR--SMGK--TNSIE---H---A--HVRNVDYDTKKKHLLVTAADESGIHL 235 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~--~~~~~---~---~--~v~~~~~~~~~~~~l~~~~~dg~i~i 235 (346)
.....++|+|+++++++... ++.|.++++. .+.. ...+. . + ....|+++|++++++++......|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 35788999999999888875 7889999988 3321 11111 1 1 17889999999977777777889999
Q ss_pred EEcccCCcce---eeecCCCcceEEEEeCCCCCcEEEEec-CCCeEEEEecCC
Q 019059 236 WDLRMLKAPI---QELPGHTHWTWAVCCNPEYDGFILSAG-TDSTVNLWLVST 284 (346)
Q Consensus 236 ~d~~~~~~~~---~~~~~~~~~v~~v~~~~~~~~~l~s~~-~d~~i~iwd~~~ 284 (346)
|++......+ ..+.........+.++|+| ++|+++. .++.|.+|++..
T Consensus 272 f~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEET
T ss_pred EEEecCCCceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeC
Confidence 9995322222 3333334457899999999 7666655 567999998753
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.6e-13 Score=118.91 Aligned_cols=238 Identities=11% Similarity=0.122 Sum_probs=142.5
Q ss_pred eEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCc
Q 019059 43 EVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGK 122 (346)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (346)
++.+++.+..+. +.+..+...+....|+|+++.|+.+.... ....|.+||+. .++. ..+....+.
T Consensus 199 ~l~i~d~dG~~~----~~l~~~~~~~~~p~wSPDG~~La~~s~~~-g~~~L~~~dl~---------tg~~-~~lt~~~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNE----QMLLRSPEPLMSPAWSPDGRKLAYVSFEN-RKAEIFVQDIY---------TQVR-EKVTSFPGI 263 (448)
T ss_pred EEEEEeCCCCCc----eEeecCCCcccCceECCCCCEEEEEEecC-CCcEEEEEECC---------CCCe-EEecCCCCC
Confidence 455555444322 23445677888999999999998864321 22367888876 2222 122222333
Q ss_pred eEEEEeecCCCCcEEEEecCCe--EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C--CeEEEEEc
Q 019059 123 INCVLWWSSGRHDKLVSIDEEN--IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDL 197 (346)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d~ 197 (346)
.....|+|||+.++++...++. |+++|+.+++. ..+.. +.......+|+||++.++..+. + ..|+++|+
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~-----~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITR-----HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECcc-----CCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 4578999999986666665664 77778775532 22111 1224566799999998887764 3 35777788
Q ss_pred cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCe--EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEE-EecC
Q 019059 198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESG--IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFIL-SAGT 273 (346)
Q Consensus 198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~-s~~~ 273 (346)
.+++.......+. ....+|+|+|+.++++...++. |.++|+.. + ....+... .......|+|+| ..|+ +...
T Consensus 338 ~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g-~~~~lt~~-~~d~~ps~spdG-~~I~~~~~~ 413 (448)
T PRK04792 338 ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-G-AMQVLTST-RLDESPSVAPNG-TMVIYSTTY 413 (448)
T ss_pred CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-C-CeEEccCC-CCCCCceECCCC-CEEEEEEec
Confidence 7776433222233 5567999999955555554554 55567665 2 23333322 122345799999 5554 4444
Q ss_pred CCe--EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059 274 DST--VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 274 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (346)
++. +.+++.. +.....+..+.+.+...+|+|-
T Consensus 414 ~g~~~l~~~~~~--------------------G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 414 QGKQVLAAVSID--------------------GRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCceEEEEEECC--------------------CCceEECcCCCCCcCCCccCCC
Confidence 443 6666664 4455555555556778889873
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=3.7e-14 Score=112.00 Aligned_cols=251 Identities=16% Similarity=0.274 Sum_probs=172.7
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc------------CCceEEEEeecC
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH------------VGKINCVLWWSS 131 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~ 131 (346)
..+-|.++.|...|.+|++ |..+|.|-++.-+.... ........+..| ...|..+.|.++
T Consensus 24 eadiis~vef~~~Ge~Lat----GdkgGRVv~f~r~~~~~----~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~ 95 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLAT----GDKGGRVVLFEREKLYK----GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD 95 (433)
T ss_pred hhcceeeEEeecccceEee----cCCCCeEEEeecccccc----cceeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence 3467899999999999988 46888999987653221 011222233333 356889999887
Q ss_pred CCC-cEEEEecCCeEEEEEcCCCCCCc------------------ee-------------eecccCCCceeeEEEEeCCC
Q 019059 132 GRH-DKLVSIDEENIFLWSLDCSNKNA------------------QV-------------QSKQSSGMLHYLSGGAWDPH 179 (346)
Q Consensus 132 ~~~-~~~~~~~d~~i~vwd~~~~~~~~------------------~~-------------~~~~~~~~~~~v~~~~~~~~ 179 (346)
+.. .++.++.|.+|++|.+....... .. .......|..-++++.++.|
T Consensus 96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 653 35566789999999987543221 00 00113567778999999998
Q ss_pred CCcEEEEecCCeEEEEEccCCCcc---ceeeccc-------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce---e
Q 019059 180 DVNAVAATCESSVQFWDLRSMGKT---NSIEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI---Q 246 (346)
Q Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~ 246 (346)
...++++ .|-.|.+|.+.-.... ..+++.. |++..|+|...++++-.+..|+|++.|+|....+. .
T Consensus 176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 8877665 5778999998744322 2223222 99999999988889989999999999999532111 1
Q ss_pred ee------------cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc
Q 019059 247 EL------------PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE 314 (346)
Q Consensus 247 ~~------------~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
.+ ..-...|..+.|++.| +++++-.. -+|++||++. ..+++.+.+-|.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nm------------------e~~pv~t~~vh~ 314 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNM------------------EAKPVETYPVHE 314 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccc------------------cCCcceEEeehH
Confidence 11 1222567889999999 99987654 5899999976 245555554442
Q ss_pred c------------ee---eEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 315 D------------SV---YGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 315 ~------------~v---~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
. .| ..++|+.++. .+++|+....++++++
T Consensus 315 ~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 315 YLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNL 358 (433)
T ss_pred hHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecC
Confidence 1 12 3578999886 8999999999999985
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.63 E-value=2.4e-13 Score=119.25 Aligned_cols=216 Identities=12% Similarity=0.110 Sum_probs=135.3
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCC
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVG 121 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (346)
..+++++....+ .+.+..+...+...+|+|+++.|+.+...+ ....|.+|++. .++. ..+..+..
T Consensus 170 ~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~---------~g~~-~~~~~~~~ 234 (417)
T TIGR02800 170 YELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA---------TGQR-EKVASFPG 234 (417)
T ss_pred ceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCC-CCcEEEEEECC---------CCCE-EEeecCCC
Confidence 456666554322 234445667789999999999998875332 23579999987 3322 22334555
Q ss_pred ceEEEEeecCCCCcEEEEecC--CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---CeEEEEE
Q 019059 122 KINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWD 196 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d 196 (346)
.+.+++|+|+++.++++...+ ..|++||+.++.. ..+.. +........|+|+++.|+..+.. ..|+++|
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~-----~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d 308 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTN-----GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMD 308 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCC-----CCCCCCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 677899999999755555444 4688888876532 11111 11234456899999988877642 3688888
Q ss_pred ccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCC---eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec
Q 019059 197 LRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADES---GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG 272 (346)
Q Consensus 197 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~ 272 (346)
+.+++......... ...+.|+|++. .++.++.++ .|.+||+.. + ....+... .......|+|++ ..|+..+
T Consensus 309 ~~~~~~~~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~-~~~~~p~~spdg-~~l~~~~ 383 (417)
T TIGR02800 309 ADGGEVRRLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDG-G-GERVLTDT-GLDESPSFAPNG-RMILYAT 383 (417)
T ss_pred CCCCCEEEeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCC-C-CeEEccCC-CCCCCceECCCC-CEEEEEE
Confidence 88766433222233 77889999998 555555544 788888875 3 23333322 234556899999 6666655
Q ss_pred CCC---eEEEEecC
Q 019059 273 TDS---TVNLWLVS 283 (346)
Q Consensus 273 ~d~---~i~iwd~~ 283 (346)
.++ .+.+.+..
T Consensus 384 ~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 384 TRGGRGVLGLVSTD 397 (417)
T ss_pred eCCCcEEEEEEECC
Confidence 543 35555543
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.8e-13 Score=114.38 Aligned_cols=232 Identities=12% Similarity=0.082 Sum_probs=136.7
Q ss_pred CCceEEEEeecCC-----cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE--EEecC--CeEEE
Q 019059 77 DQRIFSTVFSTGE-----SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL--VSIDE--ENIFL 147 (346)
Q Consensus 77 ~~~l~~~~~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~d--~~i~v 147 (346)
+.+++.+....+. ...|.+.|.+ +...+.+......+..-.|+|||+.+.+ ++..+ ..|.+
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~d----------G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~ 215 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYD----------GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFL 215 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCC----------CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEE
Confidence 5566655433332 2345555554 2333445455566778899999987433 45333 46888
Q ss_pred EEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CC----eEEEEEccCC--Cccceeeccc---eeEEEeC
Q 019059 148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ES----SVQFWDLRSM--GKTNSIEHAH---VRNVDYD 217 (346)
Q Consensus 148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~i~d~~~~--~~~~~~~~~~---v~~~~~~ 217 (346)
.++.+++.. .+.. ..+ .....+|+|||+.|+..+. +| .+.+|++..+ .....+.... ....+|+
T Consensus 216 ~~l~~g~~~-~lt~--~~g---~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 216 GSLENPAGK-KILA--LQG---NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred EECCCCCce-Eeec--CCC---CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 888766432 2221 122 3456799999999887763 22 3444777653 1222333222 5678999
Q ss_pred CCCCcEEEEecCCCeEEEEE--cccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC-C--CeEEEEecCCCCCCCCCc
Q 019059 218 TKKKHLLVTAADESGIHLWD--LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-D--STVNLWLVSTSNHDELPS 292 (346)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~ 292 (346)
|||+.++++...+|...+|. +.........+..+...+....|+|+| +.|+..+. + ..|.+||+.+
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~-------- 360 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLAT-------- 360 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCC--------
Confidence 99985555555567555554 432122344455455667788999999 76665443 2 3689999987
Q ss_pred ccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec--CCeEEEeeec
Q 019059 293 ESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY--DGRVRNHMLE 345 (346)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~v~vw~~~ 345 (346)
++.. .+......+....|+|+|+.++++... ...|++++++
T Consensus 361 -----------g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 361 -----------GRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred -----------CCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 3332 232223346778999999855545443 3457777764
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.6e-13 Score=115.62 Aligned_cols=225 Identities=12% Similarity=0.114 Sum_probs=138.2
Q ss_pred eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 139 (346)
.+..+...+...+|+|+++.|+.+.... ....|.+|++. .++. ..+....+.+....|+|+|+.++++.
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~~l~---------~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~ 261 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQNLD---------TGRR-EQITNFEGLNGAPAWSPDGSKLAFVL 261 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCC-CCCEEEEEECC---------CCCE-EEccCCCCCcCCeEECCCCCEEEEEE
Confidence 3445677899999999999998764221 23468888987 2222 22323334456789999999766555
Q ss_pred ecCC--eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C--CeEEEEEccCCCccceeeccc-eeE
Q 019059 140 IDEE--NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDLRSMGKTNSIEHAH-VRN 213 (346)
Q Consensus 140 ~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~-v~~ 213 (346)
..++ .|+++|+.++.. ..+.. +........|+|+++.++..+. + ..|+++|+.+++.......+. ...
T Consensus 262 ~~~g~~~Iy~~d~~~~~~-~~lt~-----~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~ 335 (430)
T PRK00178 262 SKDGNPEIYVMDLASRQL-SRVTN-----HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR 335 (430)
T ss_pred ccCCCceEEEEECCCCCe-EEccc-----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence 4444 688889886542 22211 1223556789999998877764 3 368888887776433222223 556
Q ss_pred EEeCCCCCcEEEEecCCC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec-CCC--eEEEEecCCCCCC
Q 019059 214 VDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG-TDS--TVNLWLVSTSNHD 288 (346)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~ 288 (346)
..|+|+++.++++...++ .|.++|+.... .+.+.. ........|+|+| +.++..+ .++ .|.++++..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~--~~~lt~-~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~~~~g---- 407 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGS--VRILTD-TSLDESPSVAPNG-TMLIYATRQQGRGVLMLVSING---- 407 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCC--EEEccC-CCCCCCceECCCC-CEEEEEEecCCceEEEEEECCC----
Confidence 789999995444444444 57888887532 333332 2233356899999 6665444 334 455666643
Q ss_pred CCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (346)
.....+..+.+.+...+|+|.
T Consensus 408 ----------------~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 408 ----------------RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ----------------CceEECcCCCCCcCCCccCCC
Confidence 333344444455777888873
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.60 E-value=8.4e-13 Score=115.81 Aligned_cols=228 Identities=12% Similarity=0.113 Sum_probs=137.2
Q ss_pred CCceEEEEeec-CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--CCeEEEEEcCCC
Q 019059 77 DQRIFSTVFST-GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--EENIFLWSLDCS 153 (346)
Q Consensus 77 ~~~l~~~~~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~i~vwd~~~~ 153 (346)
+..++.....+ .....|.++|.+ +...+.+..+...+...+|+|+|++++++... ...|++||+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~d~~----------g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g 224 (417)
T TIGR02800 155 STRIAYVSKSGKSRRYELQVADYD----------GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG 224 (417)
T ss_pred CCEEEEEEEeCCCCcceEEEEcCC----------CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 34444443222 223456777764 22234455566678999999999975555432 357999999865
Q ss_pred CCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cC--CeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecC
Q 019059 154 NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CE--SSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAAD 229 (346)
Q Consensus 154 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~ 229 (346)
... .+. . +......++|+|+++.++... .+ ..|++||+.+++......... .....|+|+++.++++...
T Consensus 225 ~~~-~~~--~---~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~ 298 (417)
T TIGR02800 225 QRE-KVA--S---FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDR 298 (417)
T ss_pred CEE-Eee--c---CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECC
Confidence 422 111 1 122456689999999877554 33 469999998775432222122 5577999999844455444
Q ss_pred CC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC---eEEEEecCCCCCCCCCcccccCCcccccc
Q 019059 230 ES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---TVNLWLVSTSNHDELPSESLVESPNQRAN 304 (346)
Q Consensus 230 dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
++ .|+++|+.. . ....+..+...+..+.|+|++ .+|+..+.++ .|.+||+.. +
T Consensus 299 ~g~~~iy~~d~~~-~-~~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~-------------------~ 356 (417)
T TIGR02800 299 GGSPQIYMMDADG-G-EVRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDG-------------------G 356 (417)
T ss_pred CCCceEEEEECCC-C-CEEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCC-------------------C
Confidence 44 577777764 2 244455455667788999999 7777777665 788888876 2
Q ss_pred ccccccccccceeeEEEeCCCCCcEEEEeecCC--eEEEeee
Q 019059 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG--RVRNHML 344 (346)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~v~vw~~ 344 (346)
.. ..+.... ......|+|+++.++++...++ .+++.+.
T Consensus 357 ~~-~~l~~~~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 357 GE-RVLTDTG-LDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred Ce-EEccCCC-CCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 21 2222111 2345689999984444443333 3445443
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=4.8e-13 Score=103.58 Aligned_cols=211 Identities=14% Similarity=0.162 Sum_probs=142.1
Q ss_pred CcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeec---CCCCcEEEEecCCeEEEEEcCCCCCCceeeeccc
Q 019059 89 ESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWS---SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS 164 (346)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 164 (346)
.-|.+.+|++.+... .++.++ ....+.+..+.|.. ++...++-.-.+|.|.++..........+.....
T Consensus 44 R~Gkl~Lys~~d~~~-------~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~ 116 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKL-------SPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS 116 (339)
T ss_pred eccceEEEeeccccc-------CccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch
Confidence 346788998873211 111122 12345677888863 3442233334479999998775443333322211
Q ss_pred CCC-ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc--ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEc
Q 019059 165 SGM-LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT--NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDL 238 (346)
Q Consensus 165 ~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 238 (346)
... .....++.|++.+..++++-.+|.+.+-+....... ...+ +| +...+|+...++++.+|++|+.+..||+
T Consensus 117 ~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 117 KKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred hhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 111 113567789998888999888999886555443322 2344 45 8888898888889999999999999999
Q ss_pred ccCCcceee-ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccccee
Q 019059 239 RMLKAPIQE-LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSV 317 (346)
Q Consensus 239 ~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 317 (346)
|.++..+.. .+.|...|.+|.-+|..+.++++|+.|..|++||.+. -+++++.-.- .+.|
T Consensus 196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn------------------m~kPl~~~~v-~GGV 256 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN------------------MGKPLFKAKV-GGGV 256 (339)
T ss_pred cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc------------------ccCccccCcc-ccce
Confidence 955544433 5568999999999988779999999999999999996 2566654432 3669
Q ss_pred eEEEeCCCC
Q 019059 318 YGLAWSSRE 326 (346)
Q Consensus 318 ~~~~~~~~~ 326 (346)
+.+.++|..
T Consensus 257 WRi~~~p~~ 265 (339)
T KOG0280|consen 257 WRIKHHPEI 265 (339)
T ss_pred EEEEecchh
Confidence 999999853
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=9.3e-13 Score=115.43 Aligned_cols=214 Identities=12% Similarity=0.132 Sum_probs=126.5
Q ss_pred eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC--CeEEEEEcCCCCCCceeeecccCCCce
Q 019059 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLH 169 (346)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~ 169 (346)
.|.++|.+ +...+.+..+...+....|+|||+++++++..+ ..|.+||+.+++.. .+ . ...+
T Consensus 199 ~l~i~d~d----------G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~l-t-~~~g--- 262 (448)
T PRK04792 199 QLMIADYD----------GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KV-T-SFPG--- 262 (448)
T ss_pred EEEEEeCC----------CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ee-c-CCCC---
Confidence 56666765 222234556677889999999999766665433 36888898765421 11 1 1111
Q ss_pred eeEEEEeCCCCCcEEEE-ecCC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCe--EEEEEcccCCc
Q 019059 170 YLSGGAWDPHDVNAVAA-TCES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESG--IHLWDLRMLKA 243 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~ 243 (346)
.....+|+||++.++.. ..++ .|+++|+.+++......... ....+|+|+++.++++...++. |+++|+.. +
T Consensus 263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g- 340 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-G- 340 (448)
T ss_pred CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-C-
Confidence 23467999999988765 4455 48888988776433222122 6788999999955555554554 55566654 2
Q ss_pred ceeeecCCCcceEEEEeCCCCCcEEEEecC-CCe--EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEE
Q 019059 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGT-DST--VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGL 320 (346)
Q Consensus 244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (346)
....+...........|+|+| .+|+..+. ++. |.++|+.+ ++. ..+.... .....
T Consensus 341 ~~~~Lt~~g~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~-------------------g~~-~~lt~~~-~d~~p 398 (448)
T PRK04792 341 KVSRLTFEGEQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLET-------------------GAM-QVLTSTR-LDESP 398 (448)
T ss_pred CEEEEecCCCCCcCeeECCCC-CEEEEEEecCCceEEEEEECCC-------------------CCe-EEccCCC-CCCCc
Confidence 233332222334457899999 66655444 443 45566665 222 1222111 12345
Q ss_pred EeCCCCCcEEEEeecCCe--EEEeeec
Q 019059 321 AWSSREPWIFASLSYDGR--VRNHMLE 345 (346)
Q Consensus 321 ~~~~~~~~~l~s~~~d~~--v~vw~~~ 345 (346)
.|+|+|+.++.+...++. +++++++
T Consensus 399 s~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECC
Confidence 799999855555555554 5555554
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=3.2e-12 Score=108.42 Aligned_cols=240 Identities=12% Similarity=0.064 Sum_probs=146.6
Q ss_pred CCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (346)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 167 (346)
..++.|.|.|.. +.+.+..+......-..+.++|||++ +++++.|+.|.++|+.+.+...++....
T Consensus 13 ~~~~~v~viD~~---------t~~~~~~i~~~~~~h~~~~~s~Dgr~-~yv~~rdg~vsviD~~~~~~v~~i~~G~---- 78 (369)
T PF02239_consen 13 RGSGSVAVIDGA---------TNKVVARIPTGGAPHAGLKFSPDGRY-LYVANRDGTVSVIDLATGKVVATIKVGG---- 78 (369)
T ss_dssp GGGTEEEEEETT---------T-SEEEEEE-STTEEEEEE-TT-SSE-EEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred cCCCEEEEEECC---------CCeEEEEEcCCCCceeEEEecCCCCE-EEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence 567899999988 67888888765554456789999997 5555679999999999877555554432
Q ss_pred ceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCCCccceeeccc---------eeEEEeCCCCCcEEEEecCCCeEEEEE
Q 019059 168 LHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDTKKKHLLVTAADESGIHLWD 237 (346)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg~i~i~d 237 (346)
...++++++||++++++. .++.+.++|.++.+.+..+..+. +..+..+|..+.+++.--+.+.|.+.|
T Consensus 79 --~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 79 --NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp --EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred --CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 678899999999999887 58999999999999888776331 678888888874444555558888889
Q ss_pred cccCCcceeeecCCCcceEEEEeCCCCCcEEEE-ecCCCeEEEEecCCCCCCCC------Cc---------------ccc
Q 019059 238 LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS-AGTDSTVNLWLVSTSNHDEL------PS---------------ESL 295 (346)
Q Consensus 238 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~------~~---------------~~~ 295 (346)
......................|+|++ ++++. ...++.|.++|..+.+.... .. +..
T Consensus 157 y~d~~~~~~~~i~~g~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~ 235 (369)
T PF02239_consen 157 YSDPKNLKVTTIKVGRFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT 235 (369)
T ss_dssp TTTSSCEEEEEEE--TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred eccccccceeeecccccccccccCccc-ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence 876543333333345567788999999 66544 55567888888876421100 00 000
Q ss_pred cCC---------------ccccccccccccccccceeeEEEeCCCCCcEEEE---eecCCeEEEeeec
Q 019059 296 VES---------------PNQRANSLLNSYSDYEDSVYGLAWSSREPWIFAS---LSYDGRVRNHMLE 345 (346)
Q Consensus 296 ~~~---------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~d~~v~vw~~~ 345 (346)
... ......+.+.++.....+ .-+.-+|+++++.+. +...+.|.++|.+
T Consensus 236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 000 011233444444444444 667889999855444 3566889999875
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.57 E-value=1e-12 Score=103.99 Aligned_cols=227 Identities=14% Similarity=0.233 Sum_probs=151.1
Q ss_pred ccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee
Q 019059 37 SLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL 116 (346)
Q Consensus 37 ~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 116 (346)
++..+..+++|---+. ..........-+.++.++.+.++...|++. -..|++.-+.+.+..+ ....++..
T Consensus 41 ~~s~drtvrv~lkrds-~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg----~~ngtvtefs~sedfn-----km~~~r~~ 110 (404)
T KOG1409|consen 41 SVSEDRTVRVWLKRDS-GQYWPSIYHYMPSPCSAMEYVSESRRLYVG----QDNGTVTEFALSEDFN-----KMTFLKDY 110 (404)
T ss_pred EccccceeeeEEeccc-cccCchhhhhCCCCceEeeeeccceEEEEE----EecceEEEEEhhhhhh-----hcchhhhh
Confidence 3445666666632222 111112222345789999999988888885 3677888887763222 34555667
Q ss_pred eccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE
Q 019059 117 DAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD 196 (346)
Q Consensus 117 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 196 (346)
..|...+..+-|+-...+ +++.+.|..+.---.+.+.....+.... ..+++.+.-. +.+.|...|.|....
T Consensus 111 ~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~------~~t~~~~d~~--~~fvGd~~gqvt~lr 181 (404)
T KOG1409|consen 111 LAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFET------PASALQFDAL--YAFVGDHSGQITMLK 181 (404)
T ss_pred hhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeec------cCCCCceeeE--EEEecccccceEEEE
Confidence 789999999999987775 6666777666544444444333333221 1122222111 344444556666554
Q ss_pred ccC--CCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059 197 LRS--MGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271 (346)
Q Consensus 197 ~~~--~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 271 (346)
+.. -..+.++. +| +.+++|.|... ++++|..|..+.+||+--.+.....+.+|...|..+...+.- +.+.++
T Consensus 182 ~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~ 258 (404)
T KOG1409|consen 182 LEQNGCQLITTFN-GHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISC 258 (404)
T ss_pred EeecCCceEEEEc-CcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeec
Confidence 443 33444444 55 99999999887 999999999999999986555667788999999998887777 889999
Q ss_pred cCCCeEEEEecCCC
Q 019059 272 GTDSTVNLWLVSTS 285 (346)
Q Consensus 272 ~~d~~i~iwd~~~~ 285 (346)
+.||.|.+|+++..
T Consensus 259 ~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 259 GEDGGIVVWNMNVK 272 (404)
T ss_pred cCCCeEEEEeccce
Confidence 99999999999864
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=7e-11 Score=94.67 Aligned_cols=252 Identities=13% Similarity=0.178 Sum_probs=163.5
Q ss_pred eeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEee-eeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059 20 SDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEG-LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (346)
+.+.++++..++.++. ..+.++.+..+++++..+.+.... ...-..+-+.+++++++++++++.|. .+.|.++-+
T Consensus 43 tyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~---~g~v~v~p~ 118 (346)
T COG2706 43 TYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH---SGSVSVYPL 118 (346)
T ss_pred ceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc---CceEEEEEc
Confidence 3455677776666653 334578888899987644444322 22222334889999999999998654 468999988
Q ss_pred CcccCCCCCccceeeeeeeccCCc----------eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 99 PELYGQLNSPQLERIAALDAHVGK----------INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
.+. +..........|.+. +.+..+.|+++++++..-.--.|.+|++..+.........- ..-
T Consensus 119 ~~d------G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G 190 (346)
T COG2706 119 QAD------GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPG 190 (346)
T ss_pred ccC------CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CCC
Confidence 632 122222223344444 88999999999644444234589999998654322222111 122
Q ss_pred eeeEEEEeCCCCCcEEEEec-CCeEEEEEccCC-Cccceee------c---cc--eeEEEeCCCCCcEEEEecCCCeEEE
Q 019059 169 HYLSGGAWDPHDVNAVAATC-ESSVQFWDLRSM-GKTNSIE------H---AH--VRNVDYDTKKKHLLVTAADESGIHL 235 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~-~~~~~~~------~---~~--v~~~~~~~~~~~~l~~~~~dg~i~i 235 (346)
.....+.|+|+++.....+. +++|.+|..... ..+..++ . +. ...|..+|+|+++.++--....|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 36788999999999888886 899999998864 2222222 1 11 8889999999955555444557888
Q ss_pred EEcccCCcceeee---cCCCcceEEEEeCCCCCcEEEEecCC-CeEEEEecCC
Q 019059 236 WDLRMLKAPIQEL---PGHTHWTWAVCCNPEYDGFILSAGTD-STVNLWLVST 284 (346)
Q Consensus 236 ~d~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~l~s~~~d-~~i~iwd~~~ 284 (346)
|.+......+..+ ..+....+...|+|.+ ++|+++..| ..|.+|.+..
T Consensus 271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence 8887644333322 2344557888999999 888777765 4799998765
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.2e-12 Score=113.39 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=128.4
Q ss_pred eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC--CeEEEEEcCCCCCCceeeecccCCCce
Q 019059 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLH 169 (346)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~ 169 (346)
.|.++|.+ +...+.+..+...+....|+|||+++++++..+ ..|.+|++.+++.. .+. ...+
T Consensus 180 ~l~~~d~~----------g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~--~~~g--- 243 (430)
T PRK00178 180 TLQRSDYD----------GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QIT--NFEG--- 243 (430)
T ss_pred EEEEECCC----------CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-Ecc--CCCC---
Confidence 46666665 233344556777899999999999765655332 47899999866421 111 1111
Q ss_pred eeEEEEeCCCCCcEEEEe-cCC--eEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCC--eEEEEEcccCC
Q 019059 170 YLSGGAWDPHDVNAVAAT-CES--SVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLK 242 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~ 242 (346)
......|+|+|+.++... .++ .|+++|+.+++... +.... .....|+|+++.++++...++ .|+++|+.. +
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g 321 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-G 321 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-C
Confidence 345689999999887554 344 68889998876433 32222 667899999985555554444 466667664 3
Q ss_pred cceeeecCCCcceEEEEeCCCCCcEEEEecC-CC--eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGT-DS--TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319 (346)
Q Consensus 243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (346)
. ...+...........|+|+| ..|+..+. ++ .|.+||+.+ ++. ..+.. ......
T Consensus 322 ~-~~~lt~~~~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~t-------------------g~~-~~lt~-~~~~~~ 378 (430)
T PRK00178 322 R-AERVTFVGNYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQR-------------------GSV-RILTD-TSLDES 378 (430)
T ss_pred C-EEEeecCCCCccceEECCCC-CEEEEEEccCCceEEEEEECCC-------------------CCE-EEccC-CCCCCC
Confidence 2 33332222334457899999 66665543 33 578888876 322 11211 111235
Q ss_pred EEeCCCCCcEEEEeecCCe--EEEeeec
Q 019059 320 LAWSSREPWIFASLSYDGR--VRNHMLE 345 (346)
Q Consensus 320 ~~~~~~~~~~l~s~~~d~~--v~vw~~~ 345 (346)
..|+|+|+.++.+...++. +.+++++
T Consensus 379 p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 379 PSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECC
Confidence 6899999855555544444 4454543
No 252
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=3e-12 Score=107.85 Aligned_cols=266 Identities=12% Similarity=0.104 Sum_probs=175.7
Q ss_pred ccCCCCcceEEE-eecccCCCCeEEEEEecCCCCeEEEeeeeccc--cceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059 22 VKADTDHTSFLT-GTLSLKEENEVHLLRLSSGGTELICEGLFSHP--NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (346)
Q Consensus 22 ~~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (346)
+..+++++-++. |+ ..-+|.++++.... ..+..|- ..|.-.-.+.|-..++.. -.|.+|.+...
T Consensus 57 ik~s~DGqY~lAtG~----YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L----~~DR~IefHak 123 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGT----YKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFL----QNDRTIEFHAK 123 (703)
T ss_pred eEecCCCcEEEEecc----cCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEe----ecCceeeehhh
Confidence 455666654443 33 34578888888743 2333344 344444445555555554 37777777653
Q ss_pred CcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC
Q 019059 99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP 178 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 178 (346)
. ..-..++. ...-..++++.-...+++++ ....|+-++++.+.-...+... ...++.+..++
T Consensus 124 ~-----------G~hy~~RI-P~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~ 185 (703)
T KOG2321|consen 124 Y-----------GRHYRTRI-PKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETD-----SGELNVVSINE 185 (703)
T ss_pred c-----------Ceeeeeec-CcCCccccccCCCccEEEee-cCcceEEEEccccccccccccc-----cccceeeeecC
Confidence 3 11111111 12234566654444444444 4678999999977654443332 23789999999
Q ss_pred CCCcEEEEecCCeEEEEEccCCCccceeecc--------c-----eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcce
Q 019059 179 HDVNAVAATCESSVQFWDLRSMGKTNSIEHA--------H-----VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPI 245 (346)
Q Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~-----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 245 (346)
....|++|+.+|.|.+||.+....+..+..+ . |+++.|+.+|- -+++|..+|.+.|||+|... |+
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~-pl 263 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASK-PL 263 (703)
T ss_pred ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCC-ce
Confidence 9888999999999999999988766554311 1 99999998886 79999999999999999844 44
Q ss_pred e-eecCCCcceEEEEeCCCCC-cEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059 246 Q-ELPGHTHWTWAVCCNPEYD-GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS 323 (346)
Q Consensus 246 ~-~~~~~~~~v~~v~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 323 (346)
. .-.+..-+|..+.|.+.+. ..+++.. ...++|||-.+ ++....+... ..+..+++-
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~-------------------Gk~~asiEpt-~~lND~C~~ 322 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECT-------------------GKPMASIEPT-SDLNDFCFV 322 (703)
T ss_pred eecccCCccceeeecccccCCCceEEecc-hHHhhhccccc-------------------CCceeecccc-CCcCceeee
Confidence 3 2334456888999977642 4455443 46899999998 7777666543 349999999
Q ss_pred CCCCcEEEEeecCCeEEEe
Q 019059 324 SREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 324 ~~~~~~l~s~~~d~~v~vw 342 (346)
|++. +++++-++..+..|
T Consensus 323 p~sG-m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTY 340 (703)
T ss_pred cCCc-eEEEecCCCcceeE
Confidence 9887 88888877766544
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=9.6e-12 Score=104.58 Aligned_cols=223 Identities=17% Similarity=0.230 Sum_probs=145.8
Q ss_pred CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEe---ecCCcceEEEEecCcccCCCCCccceeeeeee
Q 019059 41 ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF---STGESYGAAIWQIPELYGQLNSPQLERIAALD 117 (346)
Q Consensus 41 ~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 117 (346)
.+.+++++........ .. -|...|..+.+||....-..+.+ .+|.-..++||.+.... ..+++..-.
T Consensus 145 ~nev~f~~~~~f~~~~--~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~------~~~~~a~ks 214 (566)
T KOG2315|consen 145 SNEVQFYDLGSFKTIQ--HK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG------QHQPVANKS 214 (566)
T ss_pred cceEEEEecCCcccee--ee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc------ccchhhhcc
Confidence 4677777777643222 22 25678999999997443333333 35566789999987211 112222111
Q ss_pred ccCCceEEEEeecCCCCcEEEEec--C---------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEE
Q 019059 118 AHVGKINCVLWWSSGRHDKLVSID--E---------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA 186 (346)
Q Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~--d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 186 (346)
-....-..+.|++-|+.+++..+. | ..+++.+++... ..+ .... ..+|.++.|+|+++.+++.
T Consensus 215 FFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--~~V-~L~k---~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 215 FFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--VSV-PLLK---EGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred ccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--EEE-ecCC---CCCceEEEECCCCCEEEEE
Confidence 223344578899998877666532 2 356777766222 111 1122 2389999999999877665
Q ss_pred e--cCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059 187 T--CESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP 262 (346)
Q Consensus 187 ~--~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 262 (346)
- .-..+.|+|++ +.++..+..+.=+++-|+|.|+.++++|- --|.|.+||+.+ .+.+..+... .-+-+.|+|
T Consensus 289 yGfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~--~tt~~eW~P 364 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAA--NTTVFEWSP 364 (566)
T ss_pred EecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccC--CceEEEEcC
Confidence 4 46789999988 55666666455788999999994444433 348999999998 5567766643 345578999
Q ss_pred CCCcEEEEecC------CCeEEEEecCC
Q 019059 263 EYDGFILSAGT------DSTVNLWLVST 284 (346)
Q Consensus 263 ~~~~~l~s~~~------d~~i~iwd~~~ 284 (346)
+| .+|+|++. |+.++||+..-
T Consensus 365 dG-e~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 365 DG-EYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CC-cEEEEEeccccEEecCCeEEEEecC
Confidence 99 88888764 78899999874
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.8e-11 Score=104.50 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=137.5
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEE--EEeecCCcceEEEEecCcccCCCCCccceeeeeeecc
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFS--TVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH 119 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 119 (346)
..+++.+.+..+. ..+......+..-+|+|||+.++. +.+.. ....|.+.++. .++. ..+...
T Consensus 165 ~~l~~~d~dG~~~----~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~l~---------~g~~-~~lt~~ 229 (428)
T PRK01029 165 GELWSVDYDGQNL----RPLTQEHSLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGSLE---------NPAG-KKILAL 229 (428)
T ss_pred ceEEEEcCCCCCc----eEcccCCCCcccceEccCCCceEEEEEEccC-CCceEEEEECC---------CCCc-eEeecC
Confidence 3566665544332 223334556778899999987432 32222 22456666765 2221 223233
Q ss_pred CCceEEEEeecCCCCcEEEEecCC--e--EEEEEcCCCC--CCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCe-
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEE--N--IFLWSLDCSN--KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESS- 191 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~--~--i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~- 191 (346)
.+.....+|+|||+++++++..+| . +..|++..+. ....+... ........+|+|||+.|+..+. ++.
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~----~~~~~~~p~wSPDG~~Laf~s~~~g~~ 305 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE----AFGTQGNPSFSPDGTRLVFVSNKDGRP 305 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC----CCCCcCCeEECCCCCEEEEEECCCCCc
Confidence 445567899999998666653323 3 3446665431 12222211 1113356799999998887763 554
Q ss_pred -EEEEEccC-CCccceeeccc--eeEEEeCCCCCcEEEEecCC--CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCC
Q 019059 192 -VQFWDLRS-MGKTNSIEHAH--VRNVDYDTKKKHLLVTAADE--SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD 265 (346)
Q Consensus 192 -i~i~d~~~-~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 265 (346)
|+++++.. +.....+.... +....|+|+|+.++++...+ ..|.+||+.. + ....+......+....|+|+|
T Consensus 306 ~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g-~~~~Lt~~~~~~~~p~wSpDG- 382 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-G-RDYQLTTSPENKESPSWAIDS- 382 (428)
T ss_pred eEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-C-CeEEccCCCCCccceEECCCC-
Confidence 44445542 22233333222 77899999999444444443 3689999876 3 234444334456788999999
Q ss_pred cEEE-EecC--CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC
Q 019059 266 GFIL-SAGT--DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE 326 (346)
Q Consensus 266 ~~l~-s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 326 (346)
+.|+ ++.. ...|.++|+.. ++. ..+....+.+...+|+|..
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~-------------------g~~-~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLIT-------------------KKT-RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CEEEEEECCCCCceEEEEECCC-------------------CCE-EEeecCCCcccCceecCCC
Confidence 6555 4433 34688888876 332 2222333446778888754
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=2.8e-12 Score=108.36 Aligned_cols=185 Identities=12% Similarity=0.190 Sum_probs=145.0
Q ss_pred EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC--------------------CCCCcEEEEecCCeEEEE
Q 019059 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD--------------------PHDVNAVAATCESSVQFW 195 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~l~~~~~d~~i~i~ 195 (346)
++....||.+++|+..+++....+.+... ......+..|. .+...++-|...|.|.+|
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIAS--LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchh--ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 44446699999999998765554443221 11133333331 122356677788999999
Q ss_pred EccCCCccceeec-cc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059 196 DLRSMGKTNSIEH-AH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271 (346)
Q Consensus 196 d~~~~~~~~~~~~-~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 271 (346)
+...++....+.. .| |.++.++.+-. .|.+++.|+.+..|+... ...++.+...+..+.+++.+||+ ..++++
T Consensus 86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~-~~l~~a 162 (541)
T KOG4547|consen 86 SVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDG-KILLTA 162 (541)
T ss_pred EecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCC-CEEEec
Confidence 9999998887773 33 99999988876 899999999999999987 66788888888899999999999 899988
Q ss_pred cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC-----CCcEEEEeecCCeEEEeeecC
Q 019059 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR-----EPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~d~~v~vw~~~~ 346 (346)
+ ++|++||+++ .+.+..|.+|.++|+++.|--+ |.++|.+...+.-+.+|-+++
T Consensus 163 s--~~ik~~~~~~-------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIET-------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccC-------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7 5799999999 8999999999999999999876 666777777788888887653
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=6.9e-13 Score=114.86 Aligned_cols=298 Identities=14% Similarity=0.208 Sum_probs=192.7
Q ss_pred EeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCe-EEEeeeeccccceEEeeecCCCC--ceEEEEeecCCcceEE
Q 019059 18 CISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE-LICEGLFSHPNEIWDLSSCPFDQ--RIFSTVFSTGESYGAA 94 (346)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~~~~~d~~i~ 94 (346)
++.++..++.+.-++.+ ...-++++++.....+ ..... -.+-.|-++.|+|... +-++. -+...-.
T Consensus 26 ~~~a~si~p~grdi~lA-----sr~gl~i~dld~p~~ppr~l~h--~tpw~vad~qws~h~a~~~wiVs----ts~qkai 94 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLA-----SRQGLYIIDLDDPFTPPRWLHH--ITPWQVADVQWSPHPAKPYWIVS----TSNQKAI 94 (1081)
T ss_pred cccceeeccccchhhhh-----hhcCeEEEeccCCCCCceeeec--cCcchhcceecccCCCCceeEEe----cCcchhh
Confidence 34444444444444433 2345677777664332 22211 1234677888987543 32332 2444567
Q ss_pred EEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE
Q 019059 95 IWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG 174 (346)
Q Consensus 95 vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 174 (346)
+|++... .....-..+.+|...|+.+.|+|+.+.++++++-|..+..||+++......... ........+
T Consensus 95 iwnlA~s------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~----~w~s~asqV 164 (1081)
T KOG0309|consen 95 IWNLAKS------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS----SWRSAASQV 164 (1081)
T ss_pred hhhhhcC------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee----cccccCcee
Confidence 8998731 122333456789999999999999998777778899999999997553322221 123356788
Q ss_pred EeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC
Q 019059 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH 251 (346)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 251 (346)
+|+-....+++.+....|++||++.+........+| ++.++|+..-...+.+.+.|++|+.||..+....-......
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 999888888888888999999999886544433356 88888887655578899999999999988644333333345
Q ss_pred CcceEEEEeCCCCCcEEEEe-cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC----
Q 019059 252 THWTWAVCCNPEYDGFILSA-GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE---- 326 (346)
Q Consensus 252 ~~~v~~v~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 326 (346)
..+|..-++-|-|+.+.+-- -.+..+.+++.+....+-. ......+++++.||...|..+-|-..+
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n---------~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~ 315 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWN---------VFDLNTPVHTFVGHDDVVLEFLWRKRKECDG 315 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchhhhhc---------cccCCcceeeecCcchHHHHHhhhhcccccC
Confidence 67788888888774333221 1223555554443111100 001257899999999988777775321
Q ss_pred -----CcEEEEeecCCeEEEeeec
Q 019059 327 -----PWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 327 -----~~~l~s~~~d~~v~vw~~~ 345 (346)
...|++-+.|..+|+|-+.
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CCCccceeEEEeecCCceEeeecc
Confidence 2469999999999999875
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.6e-11 Score=102.05 Aligned_cols=235 Identities=11% Similarity=0.154 Sum_probs=155.9
Q ss_pred EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE------ecC
Q 019059 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS------IDE 142 (346)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~d 142 (346)
+++.|++|....+-. ..+.+.+|++.. ...... +-|...|..+.++|......++. |.-
T Consensus 129 W~~qfs~dEsl~arl-----v~nev~f~~~~~--------f~~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-----VSNEVQFYDLGS--------FKTIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred cccccccchhhhhhh-----hcceEEEEecCC--------ccceee--eeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 578888876544332 345799999872 112222 24677899999999855445554 234
Q ss_pred CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEE-ec-----------CCeEEEEEccCCCccceeeccc
Q 019059 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAA-TC-----------ESSVQFWDLRSMGKTNSIEHAH 210 (346)
Q Consensus 143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~-----------d~~i~i~d~~~~~~~~~~~~~~ 210 (346)
..|+||..........+..+.+ ....-..+.|++-+.-|++- +. ..+++++++....+...+....
T Consensus 194 a~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G 271 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG 271 (566)
T ss_pred cEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence 6899998863332222221111 11234567888877654432 21 2479999988555555555333
Q ss_pred -eeEEEeCCCCCcEEEE-ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC---CeEEEEecCCC
Q 019059 211 -VRNVDYDTKKKHLLVT-AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD---STVNLWLVSTS 285 (346)
Q Consensus 211 -v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d---~~i~iwd~~~~ 285 (346)
|.++.|+|++..+.++ |-.--.+.+||++ ..++..+ .+++-+++-|+|.| ++|+.++-+ |.|-|||+..
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n- 345 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPN- 345 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccc-
Confidence 9999999999743333 4445689999998 4466665 36778889999999 888887764 7899999998
Q ss_pred CCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec-----CCeEEEeeecC
Q 019059 286 NHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY-----DGRVRNHMLEK 346 (346)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~v~vw~~~~ 346 (346)
.+++..+..... +-+.|+|||++++.+... |+.++||+.+|
T Consensus 346 ------------------~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 346 ------------------RKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ------------------hhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 788877766543 558999999844433333 78899999865
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=1.9e-12 Score=116.03 Aligned_cols=197 Identities=15% Similarity=0.234 Sum_probs=146.8
Q ss_pred CceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC
Q 019059 121 GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200 (346)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (346)
+.|....+.-+... ++....++.+.+||........++...+. .......-+.++++.-++++++--+.|.+|+....
T Consensus 88 ~wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~i~~~er-~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 88 DWIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSKIQSDER-CTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccchhhhcce-EEEEEcCceEEEEecccCceehhcCCCce-EEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 34444555556664 44444578999999886544333332211 11112333455666677888888999999999843
Q ss_pred Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059 201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV 277 (346)
Q Consensus 201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i 277 (346)
.....+ .+| |-.+.|+.+|. ++++.++|.++++|++.+........-+|...|..+.|.|+ .+++++.|.+.
T Consensus 166 n~p~~l-~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctc 240 (967)
T KOG0974|consen 166 NKPIRL-KGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTC 240 (967)
T ss_pred CCccee-cccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEE
Confidence 333323 366 99999999998 99999999999999999855544466789999999999996 79999999999
Q ss_pred EEEecCCCCCCCCCcccccCCccccccccccccccccc-eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 278 NLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED-SVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
++|+.+ +..+.++.+|.. .|+.++..++.. ++++++.|+.+++|++.
T Consensus 241 rvW~~~--------------------~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 241 RVWGVN--------------------GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEecc--------------------cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhh
Confidence 999776 466668888864 599999999876 89999999999999864
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.46 E-value=5.8e-12 Score=99.77 Aligned_cols=254 Identities=12% Similarity=0.138 Sum_probs=182.7
Q ss_pred eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeee-eccCCceEEEEeecCCC
Q 019059 55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAAL-DAHVGKINCVLWWSSGR 133 (346)
Q Consensus 55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 133 (346)
+.....+.||.+.|++...-|..+-++++ +.|.+++||--.+ .++.-..+ ..-..+++++.+.++..
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~----s~drtvrv~lkrd--------s~q~wpsI~~~mP~~~~~~~y~~e~~ 81 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISV----SEDRTVRVWLKRD--------SGQYWPSIYHYMPSPCSAMEYVSESR 81 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEc----cccceeeeEEecc--------ccccCchhhhhCCCCceEeeeeccce
Confidence 34456778999999999999988888886 6999999996542 22222222 12356788999998877
Q ss_pred CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-ee
Q 019059 134 HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VR 212 (346)
Q Consensus 134 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~ 212 (346)
. ++++-..|++.-+.+...-.. .........|...+..+-|+.....+++.+.|..+.---.+.+..+....... ..
T Consensus 82 ~-L~vg~~ngtvtefs~sedfnk-m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t 159 (404)
T KOG1409|consen 82 R-LYVGQDNGTVTEFALSEDFNK-MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS 159 (404)
T ss_pred E-EEEEEecceEEEEEhhhhhhh-cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCC
Confidence 4 777777899998887643322 22233345677899999999888889999988877655555555443322111 22
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEEcccC-CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059 213 NVDYDTKKKHLLVTAADESGIHLWDLRML-KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP 291 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 291 (346)
++.+.-. ....|...|.|.+..+... -.++.++.+|...+.+++|.|.. .+|.+|..|..+.+||+-.
T Consensus 160 ~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg------- 228 (404)
T KOG1409|consen 160 ALQFDAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGG------- 228 (404)
T ss_pred CCceeeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccC-------
Confidence 2222211 3445666677666554431 24788899999999999999998 9999999999999999986
Q ss_pred cccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.......+.+|...|..+..-+.-+ .+.+++.||.|.+|++.
T Consensus 229 -----------~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 229 -----------RKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMN 270 (404)
T ss_pred -----------Ccceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEecc
Confidence 2344566788998899998888775 88999999999999974
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.9e-11 Score=104.81 Aligned_cols=274 Identities=11% Similarity=0.143 Sum_probs=191.0
Q ss_pred eccCCCCcceEEEeecccCCCCeEEEEEecCCCC------------eEEEeeeeccccceEEeeecCCCCceEEEEeecC
Q 019059 21 DVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT------------ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG 88 (346)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~ 88 (346)
.+.++.+..-+++| +.+|.+.++.+..... .....++.+|.+.|.-+.|+.+.+.|-+ +.
T Consensus 19 c~~WNke~gyIAcg----G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt----SD 90 (1189)
T KOG2041|consen 19 CAEWNKESGYIACG----GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT----SD 90 (1189)
T ss_pred EEEEcccCCeEEec----cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc----cC
Confidence 34455577777776 4678888888765421 2223568899999999999998888877 47
Q ss_pred CcceEEEEecCcccCCCCCccceeee--eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059 89 ESYGAAIWQIPELYGQLNSPQLERIA--ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (346)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 166 (346)
.+|.|.||-+- .+.-.. .-...++.|.+++|+.+|+. +.....||.|.+=.++.+.. ..+...+
T Consensus 91 t~GlIiVWmly---------kgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRI----wgKeLkg 156 (1189)
T KOG2041|consen 91 TSGLIIVWMLY---------KGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRI----WGKELKG 156 (1189)
T ss_pred CCceEEEEeee---------cccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeecccee----cchhcch
Confidence 89999999987 232222 22345678999999999996 66667899999888875432 2222222
Q ss_pred CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-------ccceee-----ccc-eeEEEeC--------CCCCcEEE
Q 019059 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-------KTNSIE-----HAH-VRNVDYD--------TKKKHLLV 225 (346)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~-----~~~-v~~~~~~--------~~~~~~l~ 225 (346)
. ....+.|++|.+.++.+-..|.+++||....- +..... .++ +..+.|. |+.+ .++
T Consensus 157 ~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~la 233 (1189)
T KOG2041|consen 157 Q--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLA 233 (1189)
T ss_pred h--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEE
Confidence 1 45688999999998888889999999977432 111111 122 6666664 5777 899
Q ss_pred EecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC---------eEEEEecCCCCCCCCCccccc
Q 019059 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS---------TVNLWLVSTSNHDELPSESLV 296 (346)
Q Consensus 226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~ 296 (346)
++-.+|.+.+..-.+...|+..- ..-.+....|+++| ..||.++.|. .|.+|..-
T Consensus 234 vcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~------------- 297 (1189)
T KOG2041|consen 234 VCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPY------------- 297 (1189)
T ss_pred EEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCC-cEEEEccCcccccCccccceEEEeccc-------------
Confidence 99999999887665544444332 34678889999999 9999988642 45555443
Q ss_pred CCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 297 ESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
++.+.+++.....|++++|-..|- =++-..|+.|++-++
T Consensus 298 -------G~i~gtlkvpg~~It~lsWEg~gL--riA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 298 -------GHIVGTLKVPGSCITGLSWEGTGL--RIAIAVDSFIYFANI 336 (1189)
T ss_pred -------hhheEEEecCCceeeeeEEcCCce--EEEEEecceEEEEee
Confidence 677788887788899999987663 334455777776554
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=2.7e-12 Score=121.03 Aligned_cols=186 Identities=12% Similarity=0.230 Sum_probs=140.4
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeee-ccCCceEEEEeecCCCCcEEEEecC
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALD-AHVGKINCVLWWSSGRHDKLVSIDE 142 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d 142 (346)
+-..|.++.-+|...+.++ |+.||.+++|... ..+.+..++ .....|+.+.|+.+|.. +-++-.|
T Consensus 2207 ~v~~v~r~~sHp~~~~Ylt----gs~dgsv~~~~w~---------~~~~v~~~rt~g~s~vtr~~f~~qGnk-~~i~d~d 2272 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLT----GSQDGSVRMFEWG---------HGQQVVCFRTAGNSRVTRSRFNHQGNK-FGIVDGD 2272 (2439)
T ss_pred ccCceeeecCCCCCceEEe----cCCCceEEEEecc---------CCCeEEEeeccCcchhhhhhhcccCCc-eeeeccC
Confidence 4477888888998888888 5899999999987 445555443 23488999999999986 5555569
Q ss_pred CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe---cCCeEEEEEccCCCccceeeccc---eeEEEe
Q 019059 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAH---VRNVDY 216 (346)
Q Consensus 143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~ 216 (346)
|.+.+|.+. +..+. ....|......+.|-. ..+++++ .++.+.+||..-......+...| ++++++
T Consensus 2273 g~l~l~q~~----pk~~~--s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~ 2344 (2439)
T KOG1064|consen 2273 GDLSLWQAS----PKPYT--SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAY 2344 (2439)
T ss_pred CceeecccC----Cccee--ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEE
Confidence 999999987 11221 1234666777888864 5566665 36899999986544333333455 999999
Q ss_pred CCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 217 DTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 217 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.|... +|++|+.+|.|++||++. ++.++.++. +. .. .+|++|+..|.++||++..
T Consensus 2345 ~P~~q-llisggr~G~v~l~D~rq-rql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2345 APKHQ-LLISGGRKGEVCLFDIRQ-RQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred cCcce-EEEecCCcCcEEEeehHH-HHHHHHhhh---------hh-hh-heeeccCcccceEEEEccc
Confidence 99998 999999999999999997 556666553 44 33 7999999999999999997
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=1.1e-10 Score=98.96 Aligned_cols=181 Identities=12% Similarity=0.144 Sum_probs=136.7
Q ss_pred CCcceEEEEecCcccCCCCCccceeeeeee---ccCCceEEEEee------c-------------CCCCcEEEEecCCeE
Q 019059 88 GESYGAAIWQIPELYGQLNSPQLERIAALD---AHVGKINCVLWW------S-------------SGRHDKLVSIDEENI 145 (346)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~------~-------------~~~~~~~~~~~d~~i 145 (346)
..||.+++|+... .+....+. .-.+...+..|. | .++..++.|...|.|
T Consensus 12 ~~~g~l~iw~t~~---------~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 12 TGDGRLRIWDTAK---------NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred CCCCeEEEEEccC---------ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 6899999999873 22222221 113334444442 1 233335555668999
Q ss_pred EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--eeEEEeCCCCCcE
Q 019059 146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHL 223 (346)
Q Consensus 146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~ 223 (346)
.+|+...++...++.... |...|.++.++.+-..+.+++.|+.+..|+....+....+.... +.+++.+||+. .
T Consensus 83 ~~ys~~~g~it~~~st~~---h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~-~ 158 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDK---HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK-I 158 (541)
T ss_pred EEEEecCCeEEEEEecCC---CCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-E
Confidence 999999877665555443 56689999999999999999999999999999988887777555 99999999998 8
Q ss_pred EEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCC-----CCcEEEEecCCCeEEEEecCC
Q 019059 224 LVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPE-----YDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 224 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+++++. .|++||+.+ ++.+..|.+|.++|+++.|.-. |..+|.+...+.-+.+|-+..
T Consensus 159 l~~as~--~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LLTASR--QIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEeccc--eEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 888765 899999998 7789999999999999999877 535556666667788887765
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=3e-10 Score=108.79 Aligned_cols=255 Identities=10% Similarity=0.117 Sum_probs=152.9
Q ss_pred EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec--------------cCCceEEEEeecCCCC
Q 019059 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA--------------HVGKINCVLWWSSGRH 134 (346)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~ 134 (346)
..+++++.+..++.+ ....+.|+++|... ..+..+.. +-.....+++.+++..
T Consensus 571 ~gvavd~~~g~lyVa---Ds~n~rI~v~d~~G----------~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFIS---DSNHNRIVVTDLDG----------NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEE---ECCCCeEEEEeCCC----------CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE
Confidence 357787766656655 35667899999762 22222211 1123578899998875
Q ss_pred cEEEEecCCeEEEEEcCCCCCCceeeeccc-----C-------CCceeeEEEEeCCCCCcE-EEEecCCeEEEEEccCCC
Q 019059 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQS-----S-------GMLHYLSGGAWDPHDVNA-VAATCESSVQFWDLRSMG 201 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~-------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~ 201 (346)
++++-...+.|+++|+.++. ...+..... . ........++++|++..+ ++...++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 45555667889999986542 111111000 0 001234678999955444 455568899999987654
Q ss_pred cccee--------e--------ccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee------------eecCC--
Q 019059 202 KTNSI--------E--------HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ------------ELPGH-- 251 (346)
Q Consensus 202 ~~~~~--------~--------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------~~~~~-- 251 (346)
..... . ......|+++|++..++++-..++.|++||+.+....+. .+...
T Consensus 717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 32100 0 001678999999986777777889999999875331110 00000
Q ss_pred ------CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCC
Q 019059 252 ------THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSR 325 (346)
Q Consensus 252 ------~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 325 (346)
-.....++++++| .++++-+.++.|++||..+.............. ..+. ...+.-.....++++++
T Consensus 797 ~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~---~dG~---~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF---KDGK---ALKAQLSEPAGLALGEN 869 (1057)
T ss_pred chhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCC---CCCc---ccccccCCceEEEEeCC
Confidence 1124688999999 888888889999999997621100000000000 0000 01112234688999999
Q ss_pred CCcEEEEeecCCeEEEeeec
Q 019059 326 EPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 326 ~~~~l~s~~~d~~v~vw~~~ 345 (346)
|+ ++++-+.+++|++|+++
T Consensus 870 G~-lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 870 GR-LFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CC-EEEEECCCCEEEEEECC
Confidence 97 88888999999999985
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1e-09 Score=95.04 Aligned_cols=197 Identities=12% Similarity=0.078 Sum_probs=119.8
Q ss_pred cceEEeeecCCCCc-eEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--C
Q 019059 66 NEIWDLSSCPFDQR-IFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID--E 142 (346)
Q Consensus 66 ~~v~~~~~~~~~~~-l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d 142 (346)
+.+....|+|+++. ++.+.+. +....|.++|+. .++.. .+....+......|+|||+.++++... +
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~-~~~~~Iyv~dl~---------tg~~~-~lt~~~g~~~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYG-ERKPTLYKYNLY---------TGKKE-KIASSQGMLVVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEcc-CCCCEEEEEECC---------CCcEE-EEecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence 36778999999986 4444322 234578888886 33332 232345556678899999986666643 4
Q ss_pred CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---CeEEEEEccCCCccceeeccceeEEEeCCC
Q 019059 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWDLRSMGKTNSIEHAHVRNVDYDTK 219 (346)
Q Consensus 143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~ 219 (346)
..|.++|+.++. ...+.. . .+ ......|+|||+.++..+.. ..|++.|+.+++..+....+. ....|+|+
T Consensus 257 ~~Iy~~dl~~g~-~~~LT~-~-~~---~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPD 329 (419)
T PRK04043 257 PDIYLYDTNTKT-LTQITN-Y-PG---IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTY 329 (419)
T ss_pred cEEEEEECCCCc-EEEccc-C-CC---ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCC
Confidence 578888877654 222211 1 11 22345799999988887742 268888998776533322222 23589999
Q ss_pred CCcEEEEecCC--------CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC-CC--eEEEEecCC
Q 019059 220 KKHLLVTAADE--------SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-DS--TVNLWLVST 284 (346)
Q Consensus 220 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~--~i~iwd~~~ 284 (346)
|+.++++.... ..|.+.|+.. + ..+.+... .......|+|+| +.|+..+. .+ .+.+.++..
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g-~~~~LT~~-~~~~~p~~SPDG-~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNS-D-YIRRLTAN-GVNQFPRFSSDG-GSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCC-C-CeEECCCC-CCcCCeEECCCC-CEEEEEEccCCcEEEEEEecCC
Confidence 99655555443 3677888765 3 24445433 233458899999 65554443 33 355555553
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=7.1e-11 Score=92.64 Aligned_cols=250 Identities=15% Similarity=0.243 Sum_probs=163.8
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC------------CceEEEEeecC
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV------------GKINCVLWWSS 131 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~ 131 (346)
..+.|+++.|...|.++++ |...|.|.++.-+...+ -..+....+++|. ..|..+.|..+
T Consensus 25 ead~ItaVefd~tg~Ylat----GDkgGRVvlfer~~s~~----ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGLYLAT----GDKGGRVVLFEREKSYG----CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccceEee----cCCCceEEEeecccccc----cchhhhhhhcccccchhhhhhccHHHHhhheeeecC
Confidence 3467899999988888877 46778999988653211 0112222233332 45788888754
Q ss_pred -CCCcEEEEecCCeEEEEEcCCCCC----------------------Cce-----------eee-----cccCCCceeeE
Q 019059 132 -GRHDKLVSIDEENIFLWSLDCSNK----------------------NAQ-----------VQS-----KQSSGMLHYLS 172 (346)
Q Consensus 132 -~~~~~~~~~~d~~i~vwd~~~~~~----------------------~~~-----------~~~-----~~~~~~~~~v~ 172 (346)
++..++.++.|.+|++|.+..... ..+ +.. .....|..-+.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 444577778899999999865410 000 000 01245666788
Q ss_pred EEEeCCCCCcEEEEecCCeEEEEEccCCCccc---eeeccc-------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059 173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTN---SIEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242 (346)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 242 (346)
++.|+.|.+.++++ .|-.|.+|.+.-..... .+++.. |++..|+|...+++.-.+..|.|++-|+|+..
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999887766654 57789999987544222 222111 99999999988788888889999999999532
Q ss_pred cce---e------------eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc
Q 019059 243 API---Q------------ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307 (346)
Q Consensus 243 ~~~---~------------~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (346)
.+. . -+.+-...|..+.|+++| +++++-+. -+|+|||++. ...++
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm------------------~k~pi 315 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNM------------------AKNPI 315 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEeccc------------------ccCCc
Confidence 111 1 112233567889999999 88887665 4899999998 24555
Q ss_pred ccccccc------------cee---eEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 308 NSYSDYE------------DSV---YGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 308 ~~~~~~~------------~~v---~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
++..-|. ..| ..+.|+.+.+ .+.+|+.....-+|-
T Consensus 316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~-~v~sgsy~NNfgiyp 365 (460)
T COG5170 316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDK-HVLSGSYSNNFGIYP 365 (460)
T ss_pred eeechHHHHHHHHHhhhhccceeeeEEEEecCCcc-cccccccccceeeec
Confidence 5554332 122 3467888776 677888777766664
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=4e-09 Score=87.80 Aligned_cols=271 Identities=9% Similarity=-0.047 Sum_probs=155.2
Q ss_pred CcceEEEeeccc-CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC---------CcceEEEE
Q 019059 27 DHTSFLTGTLSL-KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG---------ESYGAAIW 96 (346)
Q Consensus 27 ~~~~~~~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~---------~d~~i~vw 96 (346)
+.+++.+..... .-.+.+.+++....+ +.-..-.+. .-..+ ++|+++.+.++. . .+..|.+|
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~--v~g~i~~G~--~P~~~-~spDg~~lyva~---~~~~R~~~G~~~d~V~v~ 82 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGR--VLGMTDGGF--LPNPV-VASDGSFFAHAS---TVYSRIARGKRTDYVEVI 82 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCE--EEEEEEccC--CCcee-ECCCCCEEEEEe---ccccccccCCCCCEEEEE
Confidence 344555543321 113788898877642 221111122 12234 999999998885 4 57799999
Q ss_pred ecCcccCCCCCccceeeeeeeccCC-------ceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 97 QIPELYGQLNSPQLERIAALDAHVG-------KINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
|.. +.+.+..+..... ....++++|||++++++--. +..|.+.|+.+++...++....
T Consensus 83 D~~---------t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~----- 148 (352)
T TIGR02658 83 DPQ---------THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD----- 148 (352)
T ss_pred ECc---------cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-----
Confidence 998 6777777753222 23478899999975555533 8999999999776444443311
Q ss_pred eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc--e--e-eccc---eeEEEeCC-CCCcEEEEecCCCeEEEEEcc
Q 019059 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--S--I-EHAH---VRNVDYDT-KKKHLLVTAADESGIHLWDLR 239 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~--~-~~~~---v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~ 239 (346)
...-...++ ...+ +-+.||......+.+..... . + .... ...-.|.+ ++. .+.+..+ |.|.+.|+.
T Consensus 149 -~~~vy~t~e-~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~ 223 (352)
T TIGR02658 149 -CYHIFPTAN-DTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLS 223 (352)
T ss_pred -CcEEEEecC-CccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecC
Confidence 111111111 1111 22234443333222111111 0 0 0000 01113455 776 5555555 999999964
Q ss_pred cC----CcceeeecC-------CCcceEEEEeCCCCCcEEEEec----------CCCeEEEEecCCCCCCCCCcccccCC
Q 019059 240 ML----KAPIQELPG-------HTHWTWAVCCNPEYDGFILSAG----------TDSTVNLWLVSTSNHDELPSESLVES 298 (346)
Q Consensus 240 ~~----~~~~~~~~~-------~~~~v~~v~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~ 298 (346)
.. ..++..+.. ......-++++|++ ..++... ..+.|.++|..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t-------------- 288 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKT-------------- 288 (352)
T ss_pred CCcceecceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCC--------------
Confidence 32 222222211 22344459999999 5565532 125799999998
Q ss_pred ccccccccccccccccceeeEEEeCCCCC-cEEEEeecCCeEEEeeec
Q 019059 299 PNQRANSLLNSYSDYEDSVYGLAWSSREP-WIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~v~vw~~~ 345 (346)
.+.+..+.- ...+..++++|+++ .++++...++.|.+.|+.
T Consensus 289 -----~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 289 -----GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred -----CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 777776653 23589999999998 666666678999999975
No 267
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=7.6e-12 Score=108.56 Aligned_cols=213 Identities=19% Similarity=0.278 Sum_probs=156.6
Q ss_pred cceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCC--CcEEEE
Q 019059 109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHD--VNAVAA 186 (346)
Q Consensus 109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~ 186 (346)
+......++ -.+.+.++..+|.|+.+++|+. --+.+.|+............... -.+-.+.|+|.. .+-++.
T Consensus 14 tf~kslsl~-v~~~~~a~si~p~grdi~lAsr--~gl~i~dld~p~~ppr~l~h~tp---w~vad~qws~h~a~~~wiVs 87 (1081)
T KOG0309|consen 14 TFGKSLSLK-VDGGFNAVSINPSGRDIVLASR--QGLYIIDLDDPFTPPRWLHHITP---WQVADVQWSPHPAKPYWIVS 87 (1081)
T ss_pred ccCceeEEE-ecCcccceeeccccchhhhhhh--cCeEEEeccCCCCCceeeeccCc---chhcceecccCCCCceeEEe
Confidence 433333443 2567889999999998666654 34666787765544444332211 156777888754 334444
Q ss_pred ecCCeEEEEEccCC--Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeC
Q 019059 187 TCESSVQFWDLRSM--GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN 261 (346)
Q Consensus 187 ~~d~~i~i~d~~~~--~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~ 261 (346)
.....-.+|++... ..+..+..+| ++.+.|+|+.+.++++++.|-.++.||+++...++..+..-......|+|+
T Consensus 88 ts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 88 TSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred cCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 45556668988743 3444455566 999999999998999999999999999999888888887777778899999
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059 262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRN 341 (346)
Q Consensus 262 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~v 341 (346)
...+..+|+ +..+.|++||.+. ...++..+++|...|..++|...-...+.+.+.|++|+.
T Consensus 168 yk~p~vlas-shg~~i~vwd~r~------------------gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 168 YKDPNVLAS-SHGNDIFVWDLRK------------------GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred ccCcchhhh-ccCCceEEEeccC------------------CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 887455554 5556799999998 367888999999999999998754446889999999999
Q ss_pred eeecC
Q 019059 342 HMLEK 346 (346)
Q Consensus 342 w~~~~ 346 (346)
|+.+|
T Consensus 229 w~y~k 233 (1081)
T KOG0309|consen 229 WDYSK 233 (1081)
T ss_pred ecccc
Confidence 99764
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.5e-09 Score=93.98 Aligned_cols=191 Identities=12% Similarity=0.101 Sum_probs=113.4
Q ss_pred ceEEEEeecCCCC-cEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEE
Q 019059 122 KINCVLWWSSGRH-DKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFW 195 (346)
Q Consensus 122 ~i~~~~~~~~~~~-~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~ 195 (346)
.+....|+|||+. +++++. .+..|.++|+.+++.. .+.. ..+ ......|+|||+.++.... +..|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~lt~--~~g---~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KIAS--SQG---MLVVSDVSKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EEec--CCC---cEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence 7788999999986 444442 2467999999776532 2221 112 3456789999988776543 4578888
Q ss_pred EccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059 196 DLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271 (346)
Q Consensus 196 d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 271 (346)
|+.+++.. .+.... .....|+|||+.++++....+ .|.+.|+.. +. .+.+..... ....|+|+| ..|+..
T Consensus 263 dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~-~~rlt~~g~--~~~~~SPDG-~~Ia~~ 336 (419)
T PRK04043 263 DTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS-VEQVVFHGK--NNSSVSTYK-NYIVYS 336 (419)
T ss_pred ECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEeCccCCC--cCceECCCC-CEEEEE
Confidence 98877643 333222 456689999986666655544 567777764 32 222221111 124899999 655544
Q ss_pred cCC---------CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCe--EE
Q 019059 272 GTD---------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR--VR 340 (346)
Q Consensus 272 ~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--v~ 340 (346)
+.. ..|.+.|+.. +.. ..+.... ......|+|||+.++.+....+. +.
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~-------------------g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNS-------------------DYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCC-------------------CCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 432 2677778776 222 2222221 23358899999855444433333 44
Q ss_pred Eeeec
Q 019059 341 NHMLE 345 (346)
Q Consensus 341 vw~~~ 345 (346)
+.+++
T Consensus 396 ~~~l~ 400 (419)
T PRK04043 396 IIRLN 400 (419)
T ss_pred EEecC
Confidence 55544
No 269
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.2e-10 Score=104.76 Aligned_cols=151 Identities=14% Similarity=0.229 Sum_probs=119.9
Q ss_pred eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 243 (346)
.+....+..+...++.++.++.+.+||...+.....+.... ..-+.++++.- .+++|+.-+.|.+|+....+.
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccCC
Confidence 34444455567788888999999999999877666655333 22233455443 788899999999999885444
Q ss_pred ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccc-ccccccceeeEEEe
Q 019059 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN-SYSDYEDSVYGLAW 322 (346)
Q Consensus 244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~ 322 (346)
++ .+.+|.+.|..+.|+-+| .++++.|+|.++|+|++.+ .+... ..-+|+..|+.+.|
T Consensus 168 p~-~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s-------------------~~~~~~~~fgHsaRvw~~~~ 226 (967)
T KOG0974|consen 168 PI-RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDS-------------------REVLGCTGFGHSARVWACCF 226 (967)
T ss_pred cc-eecccCCceEEEEEccCC-cEEEEEecCcceeeeeccc-------------------ccccCcccccccceeEEEEe
Confidence 44 688999999999999999 9999999999999999998 44443 66789999999999
Q ss_pred CCCCCcEEEEeecCCeEEEeeec
Q 019059 323 SSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 323 ~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+|+ .++++++|.+.++|+.+
T Consensus 227 ~~n---~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 227 LPN---RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ccc---eeEEeccceEEEEEecc
Confidence 997 58999999999999654
No 270
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.33 E-value=3.8e-11 Score=91.71 Aligned_cols=221 Identities=12% Similarity=0.105 Sum_probs=132.7
Q ss_pred eeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-----
Q 019059 113 IAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT----- 187 (346)
Q Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----- 187 (346)
...+..|.++-.+-+.+--++. +++++.||.+.+++.+.......... ..|. ...+.+....++.+.++.
T Consensus 82 ~~~~a~~sep~p~~~~s~~~t~-V~~~~~dg~~~v~s~~~~~~~~~~i~---~~~~-~~as~~~~~~~~~i~s~~~g~~n 156 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTDNR-VCIGYADGSLAVFSTDKDLALMSRIP---SIHS-GSASRKICRHGNSILSGGCGNWN 156 (319)
T ss_pred eeeeeccCCCCCcccccccCCc-eEecCCCceEEEEechHHHhhhhhcc---cccc-cccccceeecccEEecCCcceEe
Confidence 3344445443333333323333 67777899999999875221111111 1111 111222222344343332
Q ss_pred cCCeEEEEEccCCCccceeec-cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCC
Q 019059 188 CESSVQFWDLRSMGKTNSIEH-AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD 265 (346)
Q Consensus 188 ~d~~i~i~d~~~~~~~~~~~~-~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 265 (346)
.-+..+.|+++..+....-.. .. |.+++-+|...+++++|+.||.+.+||.|+...|...+..|+.+++.+-|+|..+
T Consensus 157 ~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 157 AQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred eccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence 134566777765443322221 12 9999999998889999999999999999998778888999999999999999998
Q ss_pred cEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccc-------ccccccceeeEEEeCCCCCcEEEEeecCCe
Q 019059 266 GFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLN-------SYSDYEDSVYGLAWSSREPWIFASLSYDGR 338 (346)
Q Consensus 266 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 338 (346)
..|+++++||.+--||..+.... ..... .....-..+.++. .+......|.++... |+ .|++|+.-+.
T Consensus 237 ~~Lft~sedGslw~wdas~~~l~-i~~~~-s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~--g~-~lVcgtd~ea 311 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDASTTFLS-ISNQA-SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL--GP-CLVCGTDAEA 311 (319)
T ss_pred hheeEecCCCcEEEEcCCCceEE-ecCcc-ccccccccCCcccceEeeeccccccceeeeeeecc--Cc-eEEeccccce
Confidence 99999999999999999852100 00000 0000001111111 122233446666654 55 7888988888
Q ss_pred EEEee
Q 019059 339 VRNHM 343 (346)
Q Consensus 339 v~vw~ 343 (346)
|++++
T Consensus 312 Iyl~~ 316 (319)
T KOG4714|consen 312 IYLTR 316 (319)
T ss_pred EEEec
Confidence 88875
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.32 E-value=1.5e-09 Score=83.50 Aligned_cols=184 Identities=9% Similarity=0.054 Sum_probs=123.7
Q ss_pred cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (346)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 166 (346)
||.-|.+.+|.... ....++....|...|.-+.=..+...-+..++.|.++++.+++.+..........
T Consensus 90 gG~~g~fd~~~~~t--------n~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--- 158 (344)
T KOG4532|consen 90 GGASGQFDLFACNT--------NDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--- 158 (344)
T ss_pred ccccceeeeecccC--------cccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc---
Confidence 68899999999872 1223333344444332222222222225666678888888887544322222211
Q ss_pred CceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc-ceeecc----ceeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT-NSIEHA----HVRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (346)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (346)
-.+.+++++++++++++.+....|..|.+...... ..+..+ +--+..|+.... .+|++..||++.|||+|..
T Consensus 159 --~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 159 --LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred --cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEeccc
Confidence 14788999999999999999999999988754322 222211 166788998887 8999999999999999987
Q ss_pred Ccceeee----cCCCcceEEEEeCCCCC-cEEEEecCCCeEEEEecCC
Q 019059 242 KAPIQEL----PGHTHWTWAVCCNPEYD-GFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 242 ~~~~~~~----~~~~~~v~~v~~~~~~~-~~l~s~~~d~~i~iwd~~~ 284 (346)
..|.... ..|.+.+..+.|++.|. .+|...-.-+.+.+-|++.
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 6655433 35889999999998774 2344444456899999998
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2.7e-11 Score=102.11 Aligned_cols=214 Identities=16% Similarity=0.176 Sum_probs=149.8
Q ss_pred eEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC
Q 019059 55 ELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH 134 (346)
Q Consensus 55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 134 (346)
.+....+.+|+..|..++--.+...++++ +.|.+|++|.+.....+ ..+..+..++..|+.+|.++.|-.+.++
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSA----SkDKTVKLWSik~EgD~--~~tsaCQfTY~aHkk~i~~igfL~~lr~ 798 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISA----SKDKTVKLWSIKPEGDE--IGTSACQFTYQAHKKPIHDIGFLADLRS 798 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeec----cCCceEEEEEeccccCc--cccceeeeEhhhccCcccceeeeeccce
Confidence 34446678999999998887777777775 79999999999843221 1233466678899999999999998873
Q ss_pred cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC--CCcEEEE-ecCCeEEEEEccCCCccceeecc--
Q 019059 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH--DVNAVAA-TCESSVQFWDLRSMGKTNSIEHA-- 209 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~-- 209 (346)
++++ |+-|.+||.-.+....+.......+ .+..+..-|+ ...++++ +...+++++|.+..+-...++..
T Consensus 799 --i~Sc-D~giHlWDPFigr~Laq~~dapk~~---a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 799 --IASC-DGGIHLWDPFIGRLLAQMEDAPKEG---AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred --eeec-cCcceeecccccchhHhhhcCcccC---CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 4444 8999999987665544444333333 2333333333 3445555 35789999999988755444321
Q ss_pred ---c--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEE-EecC
Q 019059 210 ---H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL-WLVS 283 (346)
Q Consensus 210 ---~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i-wd~~ 283 (346)
. +++++..+.|+ .++++-.+|.|.+.|.|+ +..+..++.-+-....++ .|.. +.|+....|.++.+ |...
T Consensus 873 ~~Pna~~R~iaVa~~GN-~lAa~LSnGci~~LDaR~-G~vINswrpmecdllqla-apsd-q~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGN-KLAAALSNGCIAILDARN-GKVINSWRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred CCCchheeEEEeccCcc-hhhHHhcCCcEEEEecCC-CceeccCCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhc
Confidence 1 89999999998 899999999999999998 556666655444444443 3444 67888888888888 8655
Q ss_pred C
Q 019059 284 T 284 (346)
Q Consensus 284 ~ 284 (346)
.
T Consensus 949 d 949 (1034)
T KOG4190|consen 949 D 949 (1034)
T ss_pred C
Confidence 4
No 273
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.31 E-value=1.7e-08 Score=81.88 Aligned_cols=224 Identities=14% Similarity=0.074 Sum_probs=140.4
Q ss_pred EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEee-cCCCCcEEEEecCCeEEEE
Q 019059 70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWW-SSGRHDKLVSIDEENIFLW 148 (346)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~d~~i~vw 148 (346)
++.|.+....|+.+ .-..+.|..|+.. .... ..+.... ...+.+. +++. ++++. .+.+.++
T Consensus 4 gp~~d~~~g~l~~~---D~~~~~i~~~~~~---------~~~~-~~~~~~~--~~G~~~~~~~g~--l~v~~-~~~~~~~ 65 (246)
T PF08450_consen 4 GPVWDPRDGRLYWV---DIPGGRIYRVDPD---------TGEV-EVIDLPG--PNGMAFDRPDGR--LYVAD-SGGIAVV 65 (246)
T ss_dssp EEEEETTTTEEEEE---ETTTTEEEEEETT---------TTEE-EEEESSS--EEEEEEECTTSE--EEEEE-TTCEEEE
T ss_pred ceEEECCCCEEEEE---EcCCCEEEEEECC---------CCeE-EEEecCC--CceEEEEccCCE--EEEEE-cCceEEE
Confidence 57888855566655 3467788889876 2222 2232222 6777777 6655 55554 3555666
Q ss_pred EcCCCCCCceeeecccCC-CceeeEEEEeCCCCCcEEEEecC--------CeEEEEEccCCCccceeeccc-eeEEEeCC
Q 019059 149 SLDCSNKNAQVQSKQSSG-MLHYLSGGAWDPHDVNAVAATCE--------SSVQFWDLRSMGKTNSIEHAH-VRNVDYDT 218 (346)
Q Consensus 149 d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~ 218 (346)
|..+++. ..+....... .....+.+++.|+|+..++.... |.|..++.. ++.......-. .+.|+|+|
T Consensus 66 d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 66 DPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp ETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET
T ss_pred ecCCCcE-EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC
Confidence 8876542 2222221122 45578999999999966655432 557777777 44333333223 89999999
Q ss_pred CCCcEEEEecCCCeEEEEEcccCCcce---e---eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCc
Q 019059 219 KKKHLLVTAADESGIHLWDLRMLKAPI---Q---ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPS 292 (346)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~---~---~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 292 (346)
+++.++++-+..+.|..+++......+ + .+.......-.+++..+| ++.++.-..+.|.++|.+
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~--------- 213 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD--------- 213 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT---------
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC---------
Confidence 998666677888899999987533211 1 222222347789999999 777777678899999987
Q ss_pred ccccCCccccccccccccccccceeeEEEe-CCCCCcEEEEee
Q 019059 293 ESLVESPNQRANSLLNSYSDYEDSVYGLAW-SSREPWIFASLS 334 (346)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~ 334 (346)
++.+..+.-....+++++| -|+.+.+++|.+
T Consensus 214 -----------G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 214 -----------GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -----------SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred -----------ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 4666555544446899999 466665666653
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=2.1e-11 Score=115.27 Aligned_cols=187 Identities=13% Similarity=0.204 Sum_probs=142.4
Q ss_pred ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (346)
Q Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (346)
.+-..|.++.=+|...+ +++++.||.|++|....++......... . ..++.+.|+.+|+....+..||.+.+|..
T Consensus 2206 ~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~g---~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTAG---N-SRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred cccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEEeeccC---c-chhhhhhhcccCCceeeeccCCceeeccc
Confidence 34566788888888885 8888899999999988766544443322 2 58899999999999999999999999998
Q ss_pred cCCCccceeeccc---eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059 198 RSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271 (346)
Q Consensus 198 ~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 271 (346)
. .++....+ .| ...+.|-. . ++++++ .++.+.+||.-.....-..-..|.+.++++++.|.. .+|++|
T Consensus 2281 ~-pk~~~s~q-chnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisg 2354 (2439)
T KOG1064|consen 2281 S-PKPYTSWQ-CHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISG 2354 (2439)
T ss_pred C-Ccceeccc-cCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEec
Confidence 8 44444433 33 66666654 3 566654 567899999764332222226799999999999999 999999
Q ss_pred cCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
|.+|.|++||++. .++.+.++. ++ .. .++++++..|.++||++.
T Consensus 2355 gr~G~v~l~D~rq-------------------rql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQ-------------------RQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred CCcCcEEEeehHH-------------------HHHHHHhhh---------hh-hh-heeeccCcccceEEEEcc
Confidence 9999999999997 677766654 44 23 489999999999999985
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.7e-10 Score=100.13 Aligned_cols=241 Identities=10% Similarity=0.074 Sum_probs=165.9
Q ss_pred ccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCC------CCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 65 PNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQL------NSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 65 ~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
.....|++|+....++++ ||.||.++|-.+....... ...+...-+++.+|.+.|.-+.|+.+.+. +.+
T Consensus 14 nvkL~c~~WNke~gyIAc----gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIAC----GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTT 88 (1189)
T ss_pred CceEEEEEEcccCCeEEe----ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccc
Confidence 356789999998888877 5899999999887432211 11123334578899999999999988774 666
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc-ceeeccceeEEEeC
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT-NSIEHAHVRNVDYD 217 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~v~~~~~~ 217 (346)
+..+|.|.+|-+-++.-..+..... ..+-|.+++|+.+|..+...-.||.|.+=.+...+.- +.++..+...+.|+
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnR---nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws 165 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNR---NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWS 165 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCc---CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeec
Confidence 6679999999998776444443332 3347899999999999999999999988777654322 22222227789999
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCC------cceee----ecCCCcceEEEEeC--------CCCCcEEEEecCCCeEEE
Q 019059 218 TKKKHLLVTAADESGIHLWDLRMLK------APIQE----LPGHTHWTWAVCCN--------PEYDGFILSAGTDSTVNL 279 (346)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~----~~~~~~~v~~v~~~--------~~~~~~l~s~~~d~~i~i 279 (346)
+|.+ .++.+-.+|.++++|....- .+... +......|-.+.|. |+. ..|+.+-.+|.+.|
T Consensus 166 ~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 166 EDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQI 243 (1189)
T ss_pred ccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehh
Confidence 9998 77777888999999965311 01011 11122234455553 455 78888888998888
Q ss_pred EecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059 280 WLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336 (346)
Q Consensus 280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (346)
..-.. ..+++..-.+ -.|..+.|+++|. .|+.++.|
T Consensus 244 MR~eN------------------D~~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~ 279 (1189)
T KOG2041|consen 244 MRSEN------------------DPEPVVVDTG--MKIVGAKWNHNGA-VLAVCGND 279 (1189)
T ss_pred hhhcC------------------CCCCeEEecc--cEeecceecCCCc-EEEEccCc
Confidence 65444 1333333333 3488999999997 88888765
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.28 E-value=9.9e-09 Score=85.32 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=107.2
Q ss_pred eeccccceEEeeecCCCCceEEEEeecCCcc-eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESY-GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 139 (346)
..+|.+.|.-..+.-+++.++.+ ..|| .+-|+|.+ +..+..+...-+.|.++..+++|+. ++++
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vig----t~dgD~l~iyd~~----------~~e~kr~e~~lg~I~av~vs~dGK~-~vva 419 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIG----TNDGDKLGIYDKD----------GGEVKRIEKDLGNIEAVKVSPDGKK-VVVA 419 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEe----ccCCceEEEEecC----------CceEEEeeCCccceEEEEEcCCCcE-EEEE
Confidence 34688889888888877777765 3666 89999987 3444566677789999999999995 5555
Q ss_pred ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC----CeEEEEEccCCCccceeec-cceeEE
Q 019059 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE----SSVQFWDLRSMGKTNSIEH-AHVRNV 214 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~-~~v~~~ 214 (346)
.....+.+.|+++++. +...+...+ -|+.+.|+|++++++-+--+ ..|+++|+..++......+ ++-.+-
T Consensus 420 Ndr~el~vididngnv--~~idkS~~~---lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP 494 (668)
T COG4946 420 NDRFELWVIDIDNGNV--RLIDKSEYG---LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP 494 (668)
T ss_pred cCceEEEEEEecCCCe--eEecccccc---eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc
Confidence 5567888889887753 333333223 79999999999999987654 4799999998876544332 226678
Q ss_pred EeCCCCCcEEEE
Q 019059 215 DYDTKKKHLLVT 226 (346)
Q Consensus 215 ~~~~~~~~~l~~ 226 (346)
+|.|+++++...
T Consensus 495 aFD~d~ryLYfL 506 (668)
T COG4946 495 AFDPDGRYLYFL 506 (668)
T ss_pred ccCCCCcEEEEE
Confidence 899999865443
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.6e-09 Score=90.24 Aligned_cols=237 Identities=12% Similarity=0.213 Sum_probs=140.5
Q ss_pred EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--------
Q 019059 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-------- 140 (346)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------- 140 (346)
+-+.|||.|.+|++- ....|.+|--+ ....++.+ .|. .|.-+.|||..++++.-+.
T Consensus 214 tyv~wSP~GTYL~t~-----Hk~GI~lWGG~---------~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~ 277 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTF-----HKQGIALWGGE---------SFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEED 277 (698)
T ss_pred eeEEecCCceEEEEE-----eccceeeecCc---------cHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcc
Confidence 568999999999986 55679999865 66666666 565 4789999999997333331
Q ss_pred --cCCeEEEEEcCCCCCCceeeecc---------------------------------------cCCCceeeEEEEeCCC
Q 019059 141 --DEENIFLWSLDCSNKNAQVQSKQ---------------------------------------SSGMLHYLSGGAWDPH 179 (346)
Q Consensus 141 --~d~~i~vwd~~~~~~~~~~~~~~---------------------------------------~~~~~~~v~~~~~~~~ 179 (346)
+...++|||+.++.....+.... ..-....|....|+|.
T Consensus 278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPT 357 (698)
T ss_pred cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCC
Confidence 12689999999885433322200 0011223445566666
Q ss_pred CCcEEEEec--C---CeEEEEE----------------------------------------------------ccCCC-
Q 019059 180 DVNAVAATC--E---SSVQFWD----------------------------------------------------LRSMG- 201 (346)
Q Consensus 180 ~~~l~~~~~--d---~~i~i~d----------------------------------------------------~~~~~- 201 (346)
+..|+--.. + ..+.+.. ++...
T Consensus 358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 554443221 0 0111111 11000
Q ss_pred ccceeeccc-eeEEEeCCCCCcEEEEec-C--CCeEEEEEccc-CCc--ceeeecCCCcceEEEEeCCCCCcEEEEe---
Q 019059 202 KTNSIEHAH-VRNVDYDTKKKHLLVTAA-D--ESGIHLWDLRM-LKA--PIQELPGHTHWTWAVCCNPEYDGFILSA--- 271 (346)
Q Consensus 202 ~~~~~~~~~-v~~~~~~~~~~~~l~~~~-~--dg~i~i~d~~~-~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~s~--- 271 (346)
++..+.... |...+|-|.|+ .+++-+ . ..++++|-+.+ ... .+..+. ....+.+.|+|.| ++++.+
T Consensus 438 pve~velke~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~ 513 (698)
T KOG2314|consen 438 PVEVVELKESVIAFAWEPHGD-KFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG-RFVVVAALV 513 (698)
T ss_pred CceeeecchheeeeeeccCCC-eEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC-cEEEEEEec
Confidence 000011011 77889999998 444433 2 24788888873 222 223332 3556889999999 777665
Q ss_pred cCCCeEEEEecCCCCCCCCCcccccCCccccccccccc-cccccceeeEEEeCCCCCcEEEEeec------CCeEEEeee
Q 019059 272 GTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFASLSY------DGRVRNHML 344 (346)
Q Consensus 272 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~------d~~v~vw~~ 344 (346)
|..|.+.++|+.. ..+..+ ...|.. .+.+.|.|.|+ ++++++. |.--++|++
T Consensus 514 s~~g~l~F~D~~~-------------------a~~k~~~~~eh~~-at~veWDPtGR-YvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 514 SRRGDLEFYDTDY-------------------ADLKDTASPEHFA-ATEVEWDPTGR-YVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred ccccceEEEecch-------------------hhhhhccCccccc-cccceECCCCC-EEEEeeehhhhccccceEEEEe
Confidence 4568899999985 222221 223443 68899999997 7777764 445677776
Q ss_pred cC
Q 019059 345 EK 346 (346)
Q Consensus 345 ~~ 346 (346)
+|
T Consensus 573 qG 574 (698)
T KOG2314|consen 573 QG 574 (698)
T ss_pred ec
Confidence 54
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=3.4e-08 Score=94.96 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=132.8
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-----------------CCceEEEEee
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-----------------VGKINCVLWW 129 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~ 129 (346)
....+++.+++..|+++ ......|+++|+.. ..+.++.+. -..-..++++
T Consensus 625 ~P~GIavd~~gn~LYVa---Dt~n~~Ir~id~~~----------~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d 691 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVA---DTENHALREIDFVN----------ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE 691 (1057)
T ss_pred CCcEEEEeCCCCEEEEE---eCCCceEEEEecCC----------CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe
Confidence 35788999887766665 34456899998762 122222110 1123578999
Q ss_pred cCCCCcEEEEecCCeEEEEEcCCCCCCceeeec----cc------CCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEcc
Q 019059 130 SSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK----QS------SGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLR 198 (346)
Q Consensus 130 ~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~----~~------~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~ 198 (346)
|++..++++...++.|++||..++... .+... .. ........+++++|++..|+++. .++.|++||+.
T Consensus 692 p~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~ 770 (1057)
T PLN02919 692 PVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK 770 (1057)
T ss_pred cCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 966655666677899999998754321 11000 00 00112457799999998666554 57899999998
Q ss_pred CCCccce-------------ee----------ccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC-----
Q 019059 199 SMGKTNS-------------IE----------HAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG----- 250 (346)
Q Consensus 199 ~~~~~~~-------------~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----- 250 (346)
++..... +. ..+...++++++|. ++++-..++.|++||... . .+..+.+
T Consensus 771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t-g-~v~tiaG~G~~G 847 (1057)
T PLN02919 771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT-K-RVTTLAGTGKAG 847 (1057)
T ss_pred CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC-C-eEEEEeccCCcC
Confidence 7542110 00 01167899999998 888888899999999875 3 2333322
Q ss_pred ---------CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCC
Q 019059 251 ---------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSN 286 (346)
Q Consensus 251 ---------~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 286 (346)
.-.....++++++| +++++-+.++.|++||+++..
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCc
Confidence 11346789999999 888888899999999998753
No 279
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=3.5e-11 Score=106.72 Aligned_cols=213 Identities=11% Similarity=0.125 Sum_probs=154.3
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
+.+..|...-+|++|+...++|+.+ ...|.|+++++. ++........|.+.|+-+.-+.+|..++.+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG----~~~Geik~~nv~---------sG~~e~s~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVG----SHAGEIKIFNVS---------SGSMEESVNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEee----eccceEEEEEcc---------CccccccccccccccccccccCCcceeeee
Confidence 5566788899999999999888884 688999999998 777778889999999999999999964444
Q ss_pred EecCC-eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc------e
Q 019059 139 SIDEE-NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------V 211 (346)
Q Consensus 139 ~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------v 211 (346)
++... ...+|++........... .-.++.|+.....-+.|+......+||+.++.+..++..+. -
T Consensus 1162 ss~S~PlsaLW~~~s~~~~~Hsf~--------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~ 1233 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTGGPRHSFD--------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN 1233 (1516)
T ss_pred ccccCchHHHhccccccCcccccc--------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc
Confidence 44443 678999875322222211 45677888765555666666678899999998776643222 6
Q ss_pred eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCC
Q 019059 212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELP 291 (346)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 291 (346)
++..|+|.+. +++ .|| -+||.|. ...++.|...+..+. -.|+|.| ..++.-++ |||+++
T Consensus 1234 n~a~FsP~D~-LIl---ndG--vLWDvR~-~~aIh~FD~ft~~~~-G~FHP~g-~eVIINSE-----IwD~RT------- 1292 (1516)
T KOG1832|consen 1234 NLAHFSPCDT-LIL---NDG--VLWDVRI-PEAIHRFDQFTDYGG-GGFHPSG-NEVIINSE-----IWDMRT------- 1292 (1516)
T ss_pred cccccCCCcc-eEe---eCc--eeeeecc-HHHHhhhhhheeccc-ccccCCC-ceEEeech-----hhhhHH-------
Confidence 7889999997 654 456 4799998 456777765443333 3599999 77776553 899999
Q ss_pred cccccCCccccccccccccccccceeeEEEeCCCCC
Q 019059 292 SESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP 327 (346)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 327 (346)
.+.++....-. -..+.|+..|.
T Consensus 1293 ------------F~lLh~VP~Ld--qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1293 ------------FKLLHSVPSLD--QCAVTFNSTGD 1314 (1516)
T ss_pred ------------HHHHhcCcccc--ceEEEeccCcc
Confidence 77776665443 25677777665
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=1e-07 Score=90.13 Aligned_cols=247 Identities=13% Similarity=0.143 Sum_probs=147.1
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE 143 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 143 (346)
..+.|.++.+.++...++.+. .+|-|.+...+. .+....+.....-+..|.+++||||+..++++++ ++
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~----~~Gdi~~~~~~~------~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~-~~ 142 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIAL----ASGDIILVREDP------DPDEDEIEIVGSVDSGILAASWSPDEELLALVTG-EG 142 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEE----CCceEEEEEccC------CCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeC-CC
Confidence 347899999999988887764 677777772221 0011222223233678999999999995444444 66
Q ss_pred eEEEEEcC----------C-------------CCCCceee------------eccc----CC---CceeeEEEEeCCCCC
Q 019059 144 NIFLWSLD----------C-------------SNKNAQVQ------------SKQS----SG---MLHYLSGGAWDPHDV 181 (346)
Q Consensus 144 ~i~vwd~~----------~-------------~~~~~~~~------------~~~~----~~---~~~~v~~~~~~~~~~ 181 (346)
++.+..-+ . |++..++. .... .+ ....-..++|-.||.
T Consensus 143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 66654321 0 00000000 0000 00 223456789999999
Q ss_pred cEEEEec---C---CeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecC---CCeEEEEEcccCCcceeeec-
Q 019059 182 NAVAATC---E---SSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAAD---ESGIHLWDLRMLKAPIQELP- 249 (346)
Q Consensus 182 ~l~~~~~---d---~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~- 249 (346)
++++.+- . ..++||+.+ |....+-.+-. -.+++|.|.|. ++++... ...|.+|.-. +.....|.
T Consensus 223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErN--GLrhgeF~l 298 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERN--GLRHGEFTL 298 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecC--CcEeeeEec
Confidence 9998863 2 579999976 54332222111 56899999998 7777653 2356666532 22122222
Q ss_pred ---CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc-ccceeeEEEeCCC
Q 019059 250 ---GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD-YEDSVYGLAWSSR 325 (346)
Q Consensus 250 ---~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 325 (346)
.....|..+.|++++ ..||..-.|. |.+|-.... -+-+.+.+.- ....+..+.|+|.
T Consensus 299 ~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NY-----------------HWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNY-----------------HWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred CCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCC-----------------EEEEEEEEEccCCCCCCceEECCC
Confidence 345679999999999 8999877665 999988761 0112222221 1222445889987
Q ss_pred CCcEEEEeecCCeEEEeee
Q 019059 326 EPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 326 ~~~~l~s~~~d~~v~vw~~ 344 (346)
.+..|.....++.+..+++
T Consensus 360 ~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCEEEEEecCCcEEEEEE
Confidence 7766666666676665543
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.16 E-value=8.5e-08 Score=75.03 Aligned_cols=215 Identities=12% Similarity=0.157 Sum_probs=126.5
Q ss_pred EEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce
Q 019059 126 VLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS 205 (346)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 205 (346)
++.+.+|+ ++|.-.|..|.|-..+..-....-...-..+....-..++|+||+..|+.+...|+|+++|+.... +..
T Consensus 3 ~~~~~~Gk--~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSDGK--LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCCCc--EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 45677888 566666888887766543222211111122233367889999999999999999999999998533 223
Q ss_pred eeccc---------eeEEEeCCCC-----CcEEEEecCCCeEEEEEccc----CCcceeeec--C-CCcceEEEEeCCCC
Q 019059 206 IEHAH---------VRNVDYDTKK-----KHLLVTAADESGIHLWDLRM----LKAPIQELP--G-HTHWTWAVCCNPEY 264 (346)
Q Consensus 206 ~~~~~---------v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~--~-~~~~v~~v~~~~~~ 264 (346)
+.++. |..+.|-+.. .+.|++-..+|.++-|-+.. .-+..+.+. . +...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 32221 6777775433 22455556677777666532 111222322 2 46799999999998
Q ss_pred CcEEEEecC-CC----------eEEEEecCCCCCCCC----CcccccCCcccc-ccccc-----cccccccceeeEEEeC
Q 019059 265 DGFILSAGT-DS----------TVNLWLVSTSNHDEL----PSESLVESPNQR-ANSLL-----NSYSDYEDSVYGLAWS 323 (346)
Q Consensus 265 ~~~l~s~~~-d~----------~i~iwd~~~~~~~~~----~~~~~~~~~~~~-~~~~~-----~~~~~~~~~v~~~~~~ 323 (346)
++|+.||. .. -+..|.+-.....-. ..+.....+.+. ..+.. .........|..|..|
T Consensus 160 -~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 160 -RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred -CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 77776653 11 255666544221100 000000000000 00100 0111235579999999
Q ss_pred CCCCcEEEEeecCCeEEEeeec
Q 019059 324 SREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 324 ~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
|||. +||+...+|.|.+|++-
T Consensus 239 Pdg~-~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 239 PDGS-LLACIHFSGSLSLWEIP 259 (282)
T ss_pred CCCC-EEEEEEcCCeEEEEecC
Confidence 9998 99999999999999974
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.15 E-value=3.4e-08 Score=82.83 Aligned_cols=200 Identities=15% Similarity=0.163 Sum_probs=130.8
Q ss_pred cceEEeeecCCCCc--eEEE-EeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--
Q 019059 66 NEIWDLSSCPFDQR--IFST-VFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI-- 140 (346)
Q Consensus 66 ~~v~~~~~~~~~~~--l~~~-~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-- 140 (346)
..|....|+|.+.. |+.- .-..+.++.+++|.+. ....+.+-.-....=..+.|.+.|+++++..-
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp---------~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP---------KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc---------CCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence 56888899996433 2221 1235778899999998 33343333333334467889999997655441
Q ss_pred --------cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe--cCCeEEEEEccCCCccceeeccc
Q 019059 141 --------DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNSIEHAH 210 (346)
Q Consensus 141 --------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~ 210 (346)
....++++++......... +...+|..++|.|.++.+++.+ .+..+.++|++.. ....+..+.
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~i~V~~------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~ 317 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERSIPVEK------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQK 317 (561)
T ss_pred eecccceeccceEEEEeecccccceec------cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcc
Confidence 1256788888733322221 1234899999999998877665 5789999999976 333333233
Q ss_pred eeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec------CCCeEEEEec
Q 019059 211 VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG------TDSTVNLWLV 282 (346)
Q Consensus 211 v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~------~d~~i~iwd~ 282 (346)
=+.+.|+|.+++.|+.|- ..|.+-+||.......+..+.+ ....-+.|+|++ .++.+.. .|..|.|||+
T Consensus 318 rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~-qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 318 RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDG-QFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCc-eEEEecCCCcccccCcceEEEEe
Confidence 778899999995444332 3478999998753333334543 234456799999 7776653 3789999999
Q ss_pred CC
Q 019059 283 ST 284 (346)
Q Consensus 283 ~~ 284 (346)
..
T Consensus 395 ~g 396 (561)
T COG5354 395 YG 396 (561)
T ss_pred cC
Confidence 85
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.13 E-value=1.5e-09 Score=88.06 Aligned_cols=152 Identities=15% Similarity=0.148 Sum_probs=105.1
Q ss_pred eEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee----eccc-eeEEEeCCCCCcEEE--EecCCCeEEEEEcccCCc
Q 019059 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI----EHAH-VRNVDYDTKKKHLLV--TAADESGIHLWDLRMLKA 243 (346)
Q Consensus 171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~-v~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~ 243 (346)
...+..++.++.++++..+....+++.+...+...+ .-.. .+.+.|..+....++ ..++...+.+|.... .
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--G 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--c
Confidence 444566778888888887777777777754431111 1111 445555555442222 233344555555543 3
Q ss_pred ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc-cccccceeeEEEe
Q 019059 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-YSDYEDSVYGLAW 322 (346)
Q Consensus 244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~ 322 (346)
+...+.+|-..++.|+|+||+ ++|+++..|..|+|-.... ...+.. .-||..-|..++.
T Consensus 143 ~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa-------------------~f~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPA-------------------TFVIESFCLGHKEFVSTISL 202 (390)
T ss_pred CcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCc-------------------ccchhhhccccHhheeeeee
Confidence 455667899999999999999 9999999999999977665 333333 3479999999999
Q ss_pred CCCCCcEEEEeecCCeEEEeeecC
Q 019059 323 SSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 323 ~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
-++. .|+++|.|++|++||+.+
T Consensus 203 ~~~~--~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 203 TDNY--LLLSGSGDKTLRLWDITS 224 (390)
T ss_pred ccCc--eeeecCCCCcEEEEeccc
Confidence 9864 689999999999999863
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.10 E-value=4.5e-07 Score=85.87 Aligned_cols=289 Identities=13% Similarity=0.123 Sum_probs=163.8
Q ss_pred CCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc-----------cC-----
Q 019059 40 EENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL-----------YG----- 103 (346)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~-----------~~----- 103 (346)
..|.|.++..++..........-.-...|.+++||||+..|+.+. .++++.+-+-+-. .+
T Consensus 95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT----~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~V 170 (928)
T PF04762_consen 95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT----GEGNLLLMTRDFDPISEVPLDSDDFGESKHV 170 (928)
T ss_pred CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe----CCCEEEEEeccceEEEEeecCccccCCCcee
Confidence 456777775544333333444445567999999999999888874 3445554432200 00
Q ss_pred ---------CCCCcccee--------------eeeeeccCCceEEEEeecCCCCcEEEEe--c---CCeEEEEEcCCCCC
Q 019059 104 ---------QLNSPQLER--------------IAALDAHVGKINCVLWWSSGRHDKLVSI--D---EENIFLWSLDCSNK 155 (346)
Q Consensus 104 ---------~~~~~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~---d~~i~vwd~~~~~~ 155 (346)
+..+..++. ...+. .++.-..++|-.||.++.+.+- . -..++||+-+ +.
T Consensus 171 sVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~- 247 (928)
T PF04762_consen 171 SVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE- 247 (928)
T ss_pred eeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-
Confidence 000000110 01122 4445678999999996333332 2 2578999876 22
Q ss_pred CceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEEEccCCCccceeec-----cc-eeEEEeCCCCCcEEEE
Q 019059 156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMGKTNSIEH-----AH-VRNVDYDTKKKHLLVT 226 (346)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~-----~~-v~~~~~~~~~~~~l~~ 226 (346)
...... . ...--..++|.|.|+.+++.-. ...|.+|.-+ |-.-..|.. .. |..+.|++++. +|+.
T Consensus 248 L~stSE-~---v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv 321 (928)
T PF04762_consen 248 LQSTSE-P---VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAV 321 (928)
T ss_pred EEeccc-c---CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCC-EEEE
Confidence 111111 1 1112356799999998887764 3456666643 333322221 12 99999999998 8887
Q ss_pred ecCCCeEEEEEcccCCcce-eeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC----CCCC---CCCccc-cc
Q 019059 227 AADESGIHLWDLRMLKAPI-QELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST----SNHD---ELPSES-LV 296 (346)
Q Consensus 227 ~~~dg~i~i~d~~~~~~~~-~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~---~~~~~~-~~ 296 (346)
-..| .|.+|-..+..=.+ +.+. .....+..+.|+|..+..|...+.+|.+..++..- .... +..... .+
T Consensus 322 ~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVID 400 (928)
T PF04762_consen 322 WLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVID 400 (928)
T ss_pred EecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEe
Confidence 6655 49999887643111 2222 12334555999998878888888877776655432 1100 000000 00
Q ss_pred CC-------ccccccccc--cccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 297 ES-------PNQRANSLL--NSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 297 ~~-------~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
.. .....++++ ..+. -..+|.+++|++++. .+++...||.+.+|..
T Consensus 401 G~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 401 GNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEe
Confidence 00 000111111 2222 245799999999987 6888899999999984
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=3.1e-09 Score=86.25 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=98.6
Q ss_pred EEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---CeEEEEEccCC
Q 019059 124 NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWDLRSM 200 (346)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~ 200 (346)
..+..+++++ +++.+..+....+++........++.... ......+.+.|..+......+-.- ..+.+|....+
T Consensus 66 ~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 66 ALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 3444566666 34444335565566666544322222111 011133455555555555555443 44555554444
Q ss_pred Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059 201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
.+...+ +| ++.++|+||++ .++++..|..|++-...... .+..+ .+|+.-|..++.-++. .|+++|.|++
T Consensus 143 ~~~~~l--GhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~~~~--~LlS~sGD~t 216 (390)
T KOG3914|consen 143 RCEPIL--GHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLTDNY--LLLSGSGDKT 216 (390)
T ss_pred Ccchhh--hhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc-chhhhccccHhheeeeeeccCc--eeeecCCCCc
Confidence 443333 56 99999999998 89999999999998877533 44444 4799999999998874 5899999999
Q ss_pred EEEEecCCCC
Q 019059 277 VNLWLVSTSN 286 (346)
Q Consensus 277 i~iwd~~~~~ 286 (346)
|++||+.+++
T Consensus 217 lr~Wd~~sgk 226 (390)
T KOG3914|consen 217 LRLWDITSGK 226 (390)
T ss_pred EEEEecccCC
Confidence 9999999853
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.10 E-value=1.1e-09 Score=83.98 Aligned_cols=147 Identities=12% Similarity=0.165 Sum_probs=100.5
Q ss_pred CCCcEEEEecCCeEEEEEccCCCcc-ceeeccc--eeEEEeCCCCCcEEEEec-----CCCeEEEEEcccCCcceeeecC
Q 019059 179 HDVNAVAATCESSVQFWDLRSMGKT-NSIEHAH--VRNVDYDTKKKHLLVTAA-----DESGIHLWDLRMLKAPIQELPG 250 (346)
Q Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~--v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~ 250 (346)
.+..++++..||.+.+.+.+.-..+ ..+...+ -.+.+....++ ++.++. .-+..+.|+++..+..+...+.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~ 178 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA 178 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccc
Confidence 3567888899999999998762211 1222111 22333334444 333322 1234556666643322222222
Q ss_pred CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEE
Q 019059 251 HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIF 330 (346)
Q Consensus 251 ~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 330 (346)
...|.+++-+|....++++|+.||.+.+||.+. ...+...+..|..+++.+.|+|..+..|
T Consensus 179 -~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn------------------~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 179 -LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARN------------------VAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred -cccchhhhCCcccccEEEEecCCCeEEEEEccc------------------ccchHHHHHHhhhhhhheeccCCCchhe
Confidence 234999999998878899999999999999997 2456677888999999999999887789
Q ss_pred EEeecCCeEEEeeec
Q 019059 331 ASLSYDGRVRNHMLE 345 (346)
Q Consensus 331 ~s~~~d~~v~vw~~~ 345 (346)
+++++||.+-.||-.
T Consensus 240 ft~sedGslw~wdas 254 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAS 254 (319)
T ss_pred eEecCCCcEEEEcCC
Confidence 999999999999864
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.06 E-value=6e-08 Score=74.95 Aligned_cols=189 Identities=6% Similarity=-0.048 Sum_probs=121.5
Q ss_pred EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEE-eCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--ee
Q 019059 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGA-WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VR 212 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~ 212 (346)
++++|..|...+|...+.+.......... ..|.-+. ..-....+..++.|.++++.++..+........+. +.
T Consensus 87 la~gG~~g~fd~~~~~tn~~h~~~cd~sn----n~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 87 LADGGASGQFDLFACNTNDGHLYQCDVSN----NDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred EEeccccceeeeecccCcccceeeecccc----cchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 55667789999999987654444433221 1121111 11112346677788889998888665544444343 88
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee--ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE--LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL 290 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 290 (346)
+++++++++ ++++.++...|-.|.+......+.. ....+..-.+..|+... ..+|++..||++.|||++.....
T Consensus 163 s~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tp-- 238 (344)
T KOG4532|consen 163 SLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATP-- 238 (344)
T ss_pred eeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccccc--
Confidence 999999998 8888888889999998865543333 22334455678899988 99999999999999999971000
Q ss_pred CcccccCCccccccccccccccccceeeEEEeCCCCCc-EEEEeecCCeEEEeee
Q 019059 291 PSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW-IFASLSYDGRVRNHML 344 (346)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~v~vw~~ 344 (346)
-.+...+-..|.+.++.+.|++.|.. +|.-.-.=+.+.+-|+
T Consensus 239 ------------m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 239 ------------MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred ------------hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 01112223458889999999986642 2333333345555554
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=9.6e-10 Score=87.52 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=105.9
Q ss_pred EEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccC----CcceeeecCCCcceEEEE
Q 019059 184 VAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRML----KAPIQELPGHTHWTWAVC 259 (346)
Q Consensus 184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~v~~v~ 259 (346)
++.+.+..+-+-|+.++-.........|.++.|...++ +++.|..+|.|..+|+|.. ..+.+.+. |...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 55666778889999887543322222299999998887 9999999999999999974 23455554 889999988
Q ss_pred eCC-CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccc---cccccccccee--eEEEeCCCCCcEEEEe
Q 019059 260 CNP-EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSL---LNSYSDYEDSV--YGLAWSSREPWIFASL 333 (346)
Q Consensus 260 ~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~~l~s~ 333 (346)
.-. ++ .+|++.+.+|+|++||++. -++ +.++.+|...- .-+...+... .++++
T Consensus 306 ~Lq~s~-q~LmaS~M~gkikLyD~R~-------------------~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~ 364 (425)
T KOG2695|consen 306 ILQFSQ-QKLMASDMTGKIKLYDLRA-------------------TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSV 364 (425)
T ss_pred hhcccc-ceEeeccCcCceeEeeehh-------------------hhcccceeeeecccccccccccccccccc-eEEEc
Confidence 666 44 8899999999999999997 555 77888885432 2233455554 78889
Q ss_pred ecCCeEEEeeec
Q 019059 334 SYDGRVRNHMLE 345 (346)
Q Consensus 334 ~~d~~v~vw~~~ 345 (346)
+.|...|||.+.
T Consensus 365 GdDcytRiWsl~ 376 (425)
T KOG2695|consen 365 GDDCYTRIWSLD 376 (425)
T ss_pred cCeeEEEEEecc
Confidence 999999999986
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=5.5e-10 Score=94.38 Aligned_cols=170 Identities=15% Similarity=0.214 Sum_probs=118.0
Q ss_pred eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCcee--eecccCCCceeeEEEEeCCCCCcEEEEec
Q 019059 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQV--QSKQSSGMLHYLSGGAWDPHDVNAVAATC 188 (346)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 188 (346)
-.+..+.+|+..|..+.--.+.+. +++++.|.+|++|.++........ .......|..+|.++.|..+-+++++ .
T Consensus 726 irL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--c 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--C 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--c
Confidence 345667899999988876555443 788889999999999754322221 11223567889999999887666654 5
Q ss_pred CCeEEEEEccCCCccceeecc--c--eeEEEeCCC-CCcEEEEe-cCCCeEEEEEcccCCcceeeec-----CCCcceEE
Q 019059 189 ESSVQFWDLRSMGKTNSIEHA--H--VRNVDYDTK-KKHLLVTA-ADESGIHLWDLRMLKAPIQELP-----GHTHWTWA 257 (346)
Q Consensus 189 d~~i~i~d~~~~~~~~~~~~~--~--v~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~ 257 (346)
|+.|++||.--++.+..+... + +..+..-++ .+.+++.| +...+|+++|.|... -...++ +....+.+
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc-ceeeEEeccCCCCchheeE
Confidence 889999999888776644321 1 333333233 22244444 788999999999733 333332 34466889
Q ss_pred EEeCCCCCcEEEEecCCCeEEEEecCCC
Q 019059 258 VCCNPEYDGFILSAGTDSTVNLWLVSTS 285 (346)
Q Consensus 258 v~~~~~~~~~l~s~~~d~~i~iwd~~~~ 285 (346)
++..+.| +.++.+-.+|.|.+.|.+++
T Consensus 882 iaVa~~G-N~lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 882 IAVADKG-NKLAAALSNGCIAILDARNG 908 (1034)
T ss_pred EEeccCc-chhhHHhcCCcEEEEecCCC
Confidence 9999999 99999999999999999983
No 290
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.04 E-value=4.2e-10 Score=96.60 Aligned_cols=208 Identities=14% Similarity=0.238 Sum_probs=140.9
Q ss_pred cceEEeeecCCCC-ceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe----
Q 019059 66 NEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI---- 140 (346)
Q Consensus 66 ~~v~~~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---- 140 (346)
..+.|+++.-+.. .++++ |..+|.|-+-.+..... .--....++....++++|++-....++++-
T Consensus 57 qy~kcva~~y~~d~cIlav---G~atG~I~l~s~r~~hd-------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAV---GSATGNISLLSVRHPHD-------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred CCceeehhhcCCchhhhhh---ccccCceEEeecCCccc-------ccceecccccccccccccccccHHHHHhhhhhhc
Confidence 3566777654433 56665 57789999988873211 112345577889999999987666566662
Q ss_pred cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC-CccceeeccceeEEEeCCC
Q 019059 141 DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-GKTNSIEHAHVRNVDYDTK 219 (346)
Q Consensus 141 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~v~~~~~~~~ 219 (346)
.|..+.|||+.+.-...+-......+......+++|..+.+.+++|.....+.++|++.. .....+....+..+..+|-
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPF 206 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCC
Confidence 367899999987522111111111112335668899988888999988999999999943 2333333222788888885
Q ss_pred CCcEEEEecCCCeEEEEE-cccCCcceeeecCCCc----ceEEEEeCCCCCcEEEEecCC-CeEEEEecCC
Q 019059 220 KKHLLVTAADESGIHLWD-LRMLKAPIQELPGHTH----WTWAVCCNPEYDGFILSAGTD-STVNLWLVST 284 (346)
Q Consensus 220 ~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~----~v~~v~~~~~~~~~l~s~~~d-~~i~iwd~~~ 284 (346)
...++++ ..||.|.+|| .++...++..+...+. .+..++|+|....++++.+.| ++|+++|+..
T Consensus 207 ~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 207 SPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCceec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 5435554 4589999999 7766666666654443 389999999887788888776 5899999986
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=9.3e-09 Score=80.99 Aligned_cols=256 Identities=17% Similarity=0.273 Sum_probs=157.2
Q ss_pred eeEeeeccCCCCcceEEEeecccCCCCeEEEEEecCCCC--eEEEeeeeccc------------cceEEeeecCCCC--c
Q 019059 16 ARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGT--ELICEGLFSHP------------NEIWDLSSCPFDQ--R 79 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~h~------------~~v~~~~~~~~~~--~ 79 (346)
+.-++++.++..+.-+++|. ..|++.++.-..... ......+.+|. ..|+.+.|..+++ +
T Consensus 26 ad~ItaVefd~tg~YlatGD----kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 26 ADKITAVEFDETGLYLATGD----KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred cceeeEEEeccccceEeecC----CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 45677777776666676663 446666654333210 00111223332 5688899976543 2
Q ss_pred eEEEEeecCCcceEEEEecCcccC------------------CCCCc----------c-----ceeeeee-eccCCceEE
Q 019059 80 IFSTVFSTGESYGAAIWQIPELYG------------------QLNSP----------Q-----LERIAAL-DAHVGKINC 125 (346)
Q Consensus 80 l~~~~~~~~~d~~i~vw~~~~~~~------------------~~~~~----------~-----~~~~~~~-~~~~~~i~~ 125 (346)
++.+ +.|.+|++|.+.+..- +...+ . ..+.+.. ..|..-|.+
T Consensus 102 FLls----tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 102 FLLS----TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred EEEe----cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 3332 5999999999864300 00000 0 0111111 457777889
Q ss_pred EEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc---cCCCceeeEEEEeCCCCCcEE-EEecCCeEEEEEccCCC
Q 019059 126 VLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGAWDPHDVNAV-AATCESSVQFWDLRSMG 201 (346)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~ 201 (346)
+.|+.|.. .+.+++|=.|.+|+++.......+..-. ......-|++..|+|....++ -.+..|.|++-|++...
T Consensus 178 iS~NsD~e--t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 178 ISFNSDKE--TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeecCchh--eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99998887 5666678999999998654333333221 111233578889999766554 44568999999999432
Q ss_pred c------cceee---------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCc----------
Q 019059 202 K------TNSIE---------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTH---------- 253 (346)
Q Consensus 202 ~------~~~~~---------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------- 253 (346)
. ..... .+- |..+.|+++|+ ++++-+ --+|++||.+..+.|+.++.-|..
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YE 333 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYE 333 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhh
Confidence 1 11110 011 88999999998 555433 368999999988888888755531
Q ss_pred --ce---EEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 254 --WT---WAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 254 --~v---~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.| ..+.|+.+. ..+.+|+..+..-+|-+.+
T Consensus 334 nDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 334 NDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ccceeeeEEEEecCCc-ccccccccccceeeecccc
Confidence 22 357788888 8899999888777776443
No 292
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.01 E-value=4.8e-07 Score=77.32 Aligned_cols=258 Identities=12% Similarity=0.147 Sum_probs=139.0
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeee-eeec--
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIA-ALDA-- 118 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~-- 118 (346)
+.++++++.... ...+......+....|||+++.++.+ .++.|.+++... ....+ +..+
T Consensus 23 ~~y~i~d~~~~~----~~~l~~~~~~~~~~~~sP~g~~~~~v-----~~~nly~~~~~~---------~~~~~lT~dg~~ 84 (353)
T PF00930_consen 23 GDYYIYDIETGE----ITPLTPPPPKLQDAKWSPDGKYIAFV-----RDNNLYLRDLAT---------GQETQLTTDGEP 84 (353)
T ss_dssp EEEEEEETTTTE----EEESS-EETTBSEEEE-SSSTEEEEE-----ETTEEEEESSTT---------SEEEESES--TT
T ss_pred eeEEEEecCCCc----eEECcCCccccccceeecCCCeeEEE-----ecCceEEEECCC---------CCeEEeccccce
Confidence 456777776632 22222236788899999999999887 567888888762 21111 1111
Q ss_pred -----c---------CCceEEEEeecCCCCcEEEEecCCeEEEEEc----------------------------------
Q 019059 119 -----H---------VGKINCVLWWSSGRHDKLVSIDEENIFLWSL---------------------------------- 150 (346)
Q Consensus 119 -----~---------~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~---------------------------------- 150 (346)
- -+.-..+-||||++++++..-++..|..+.+
T Consensus 85 ~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~ 164 (353)
T PF00930_consen 85 GIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVD 164 (353)
T ss_dssp TEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEE
T ss_pred eEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEE
Confidence 0 1123568899999986666555555444332
Q ss_pred -CCCCCCceeeec-ccCCCceeeEEEEeCCCCCcEEEEe-c----CCeEEEEEccCCCccceeeccc------eeEEEeC
Q 019059 151 -DCSNKNAQVQSK-QSSGMLHYLSGGAWDPHDVNAVAAT-C----ESSVQFWDLRSMGKTNSIEHAH------VRNVDYD 217 (346)
Q Consensus 151 -~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~----d~~i~i~d~~~~~~~~~~~~~~------v~~~~~~ 217 (346)
.+++.. .+... ........+..+.|.+++..+++.- . ...+.++|..++.......... .....|.
T Consensus 165 ~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~ 243 (353)
T PF00930_consen 165 LASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFL 243 (353)
T ss_dssp SSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-
T ss_pred CCCCcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccc
Confidence 222211 11101 0011234677889998888444433 2 2356778888776543333111 3355554
Q ss_pred -CCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEE-EEeCCCCCcEEEEecCCC--eEEEEecCCCCCCCCCcc
Q 019059 218 -TKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWA-VCCNPEYDGFILSAGTDS--TVNLWLVSTSNHDELPSE 293 (346)
Q Consensus 218 -~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-v~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~ 293 (346)
+++..++.....+|.-+|+-+.......+.+....-.|.. +.+++++..+.+++..++ .-.||.+...
T Consensus 244 ~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~-------- 315 (353)
T PF00930_consen 244 GPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD-------- 315 (353)
T ss_dssp TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT--------
T ss_pred cCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC--------
Confidence 6666566666688866666555434445566655666754 678888745556666533 4455544430
Q ss_pred cccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059 294 SLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (346)
.+..+..+......-..+.|||+++.++.+++.
T Consensus 316 ---------~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 316 ---------SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp ---------ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred ---------CCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 022333343332222689999999976666664
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=1.9e-09 Score=85.91 Aligned_cols=148 Identities=17% Similarity=0.213 Sum_probs=107.8
Q ss_pred EeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC-----C
Q 019059 127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM-----G 201 (346)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~ 201 (346)
+|+-+-...-++.+.+-.|-+-|++++-.. .+.. ...|.++.|...++.++.|+.+|.|..+|++.+ .
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~s------ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQS------KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccc-cccc------chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc
Confidence 665432221234466788999999876432 2222 337899999988999999999999999999965 3
Q ss_pred ccceeeccc-eeEEEeCC-CCCcEEEEecCCCeEEEEEcccCCcc---eeeecCCCcceEEEE--eCCCCCcEEEEecCC
Q 019059 202 KTNSIEHAH-VRNVDYDT-KKKHLLVTAADESGIHLWDLRMLKAP---IQELPGHTHWTWAVC--CNPEYDGFILSAGTD 274 (346)
Q Consensus 202 ~~~~~~~~~-v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~v~--~~~~~~~~l~s~~~d 274 (346)
+...+.++. |+++..-. +++ .|++.+-+|+|++||+|. .+. +.++.+|...-.-+- ..+.. ..+++++.|
T Consensus 291 ~a~rlyh~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD 367 (425)
T KOG2695|consen 291 CAQRLYHDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD 367 (425)
T ss_pred ceEEEEcCcchhhhhhhccccc-eEeeccCcCceeEeeehh-hhcccceeeeeccccccccccccccccc-ceEEEccCe
Confidence 455555555 88877766 455 677788899999999996 334 888889876544443 34444 788899999
Q ss_pred CeEEEEecCC
Q 019059 275 STVNLWLVST 284 (346)
Q Consensus 275 ~~i~iwd~~~ 284 (346)
...|||.++.
T Consensus 368 cytRiWsl~~ 377 (425)
T KOG2695|consen 368 CYTRIWSLDS 377 (425)
T ss_pred eEEEEEeccc
Confidence 9999999998
No 294
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=2.5e-06 Score=71.44 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=132.5
Q ss_pred CCCCcceEEEeecc-----c-CCCCeEEEEEecCCCCeEEEeeeec-----cccceEEeeecCCCCceEEEEeecCCcce
Q 019059 24 ADTDHTSFLTGTLS-----L-KEENEVHLLRLSSGGTELICEGLFS-----HPNEIWDLSSCPFDQRIFSTVFSTGESYG 92 (346)
Q Consensus 24 ~~~~~~~~~~g~~~-----~-~~~~~i~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~~~~~~~~~d~~ 92 (346)
.++++..+.+.... - ..+..|.+++....+...... +-. .......++++|+|++|++.- -..+..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n--~~p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQ--FSPSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEec--CCCCCE
Confidence 56666666665321 1 134677777766643211111 000 112234788999999998752 123789
Q ss_pred EEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059 93 AAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS 172 (346)
Q Consensus 93 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 172 (346)
|.+.|+. ..+.+..+.... ...-...++ .. +.+-+.||......+++..................+.
T Consensus 130 V~VvD~~---------~~kvv~ei~vp~-~~~vy~t~e-~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~ 196 (352)
T TIGR02658 130 VGVVDLE---------GKAFVRMMDVPD-CYHIFPTAN-DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI 196 (352)
T ss_pred EEEEECC---------CCcEEEEEeCCC-CcEEEEecC-Cc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccc
Confidence 9999998 667777665422 111112221 22 1222335555544444332211110000000000000
Q ss_pred E-EEeCC-CCCcEEEEecCCeEEEEEccCCC-----ccceeec---------cceeEEEeCCCCCcEEEEec--------
Q 019059 173 G-GAWDP-HDVNAVAATCESSVQFWDLRSMG-----KTNSIEH---------AHVRNVDYDTKKKHLLVTAA-------- 228 (346)
Q Consensus 173 ~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~---------~~v~~~~~~~~~~~~l~~~~-------- 228 (346)
. -.|.+ ++..+++... |.|.+.|+.... ....+.. +...-++++|++..+++...
T Consensus 197 ~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 197 NHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred cCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccccc
Confidence 0 03445 7777766665 999999965432 2221111 11455999999985544332
Q ss_pred -CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc-EEEEec-CCCeEEEEecCC
Q 019059 229 -DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG-FILSAG-TDSTVNLWLVST 284 (346)
Q Consensus 229 -~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~s~~-~d~~i~iwd~~~ 284 (346)
..+.|.++|..+ .+.+..+.. ...+..++++|++ + +|++.. .++.|.+.|..+
T Consensus 276 ~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dg-kp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 276 TASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDA-KPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCC-CeEEEEeCCCCCcEEEEECcC
Confidence 124799999987 545665553 5688999999999 5 666555 678899999998
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.97 E-value=7e-07 Score=70.04 Aligned_cols=190 Identities=11% Similarity=0.162 Sum_probs=106.8
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-------cCCceEEEEeecCC-----CC
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-------HVGKINCVLWWSSG-----RH 134 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~-----~~ 134 (346)
+-..++||||+..|+.+ .+.|+|+++|+.. ..+..+.. -...|..+.|.+-. .+
T Consensus 45 QWRkl~WSpD~tlLa~a----~S~G~i~vfdl~g----------~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ 110 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYA----ESTGTIRVFDLMG----------SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY 110 (282)
T ss_pred hheEEEECCCCcEEEEE----cCCCeEEEEeccc----------ceeEEcCcccccCCccccceeeeEeeccccccccce
Confidence 44679999999888886 5788999999862 22222211 23466777775432 22
Q ss_pred cEEEEecCCeEEEEEcCCC--CCCceeeecc-cCCCceeeEEEEeCCCCCcEEEEecCCe-----------EEEEEccCC
Q 019059 135 DKLVSIDEENIFLWSLDCS--NKNAQVQSKQ-SSGMLHYLSGGAWDPHDVNAVAATCESS-----------VQFWDLRSM 200 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~--~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----------i~i~d~~~~ 200 (346)
.+++-..+|.++-|-+..+ +...+..... ...+...|.++.++|..+.|++++.... +..|.+-++
T Consensus 111 ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 111 ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD 190 (282)
T ss_pred eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC
Confidence 3555566788887776322 2222211111 1223558999999999888888875321 222322222
Q ss_pred CccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEE
Q 019059 201 GKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLW 280 (346)
Q Consensus 201 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iw 280 (346)
.+... .+. +.+.. +-...... .+|.+-+.+ ...........|..+..||+| .+||+...+|.|.+|
T Consensus 191 ~Pyyk-------~v~-~~~~~-~~~~~~~~---~~~~~~~~~-~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 191 SPYYK-------QVT-SSEDD-ITASSKRR---GLLRIPSFK-FFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLW 256 (282)
T ss_pred CCcEE-------Ecc-ccCcc-cccccccc---ceeecccee-eeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEE
Confidence 21111 011 11111 11111111 222222101 011112246789999999999 999999999999999
Q ss_pred ecCC
Q 019059 281 LVST 284 (346)
Q Consensus 281 d~~~ 284 (346)
++..
T Consensus 257 ~iPs 260 (282)
T PF15492_consen 257 EIPS 260 (282)
T ss_pred ecCc
Confidence 9987
No 296
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.1e-07 Score=77.54 Aligned_cols=247 Identities=15% Similarity=0.099 Sum_probs=145.2
Q ss_pred eeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEE
Q 019059 60 GLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 60 ~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 139 (346)
.+.+|...|.+++|||...-|+.. ++-+.+|+|.|++ +...+..+..+ ..+++++|.-+..+.+++|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~---asl~nkiki~dle---------t~~~vssy~a~-~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGL---ASLGNKIKIMDLE---------TSCVVSSYIAY-NQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred cccccchhhhhhccCccccceeee---eccCceEEEEecc---------cceeeeheecc-CCceeeeeccCCcceeEEe
Confidence 455677899999999988866555 3788899999998 66667777777 7899999999999888888
Q ss_pred ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC------CCCcEEEEecCCeEEEEEccCC----Cccceeecc
Q 019059 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP------HDVNAVAATCESSVQFWDLRSM----GKTNSIEHA 209 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~ 209 (346)
-..|.|.+||++..+.......... ...+|..++.-+ .+..++.... .+..|.+... .++..+..+
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~~--t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~p 330 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVANV--TINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPP 330 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhhh--ccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCC
Confidence 7899999999986554332222111 122444443322 2333333322 2445655422 222333322
Q ss_pred c-eeEEEeCCCCCcEEEEecCCCe---EE---E-EEcccCCcceee-ecCC-Ccc------eEEEEeCCCCCcEEEEecC
Q 019059 210 H-VRNVDYDTKKKHLLVTAADESG---IH---L-WDLRMLKAPIQE-LPGH-THW------TWAVCCNPEYDGFILSAGT 273 (346)
Q Consensus 210 ~-v~~~~~~~~~~~~l~~~~~dg~---i~---i-~d~~~~~~~~~~-~~~~-~~~------v~~v~~~~~~~~~l~s~~~ 273 (346)
. +.++.+++-.+.++++.-.+.. ++ . -|-+. +.++.. -..+ ... -..+.-.++....+..+..
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d-G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD-GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeecccc-CceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence 2 6677777766656666544311 11 1 01111 111111 1111 000 0112223444233445666
Q ss_pred CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC-CCCcEEEEeecCCeEEEeeec
Q 019059 274 DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS-REPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 274 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~v~vw~~~ 345 (346)
-+++.+||..+ .+.++++.-. .+|.++.... ++..+|++-. |..++||..+
T Consensus 410 tn~lil~D~~s-------------------~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 410 TNELILQDPHS-------------------FEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred cceeEEeccch-------------------hheeeecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 67999999998 7888877654 6788877654 3444565555 6778888765
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.94 E-value=1.8e-07 Score=78.61 Aligned_cols=237 Identities=11% Similarity=0.143 Sum_probs=149.1
Q ss_pred cccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID-- 141 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-- 141 (346)
-.-++..++|||.|.+|++. .-..|.+|.-+ ....+..+ .| ..|..+.|+|.+++ +.+-+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~-----~~~~V~~~~g~---------~~~~l~~~-~~-~~V~~~~fSP~~kY-L~tw~~~p 93 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSE-----HAAGVECWGGP---------SKAKLVRF-RH-PDVKYLDFSPNEKY-LVTWSREP 93 (561)
T ss_pred cCcchhheeecCcchheehh-----hccceEEcccc---------chhheeee-ec-CCceecccCcccce-eeeeccCC
Confidence 45678899999999999884 55679999976 44444445 23 45899999999995 333232
Q ss_pred -------------CCeEEEEEcCCCCCCceeeecccCCCceeeE-EEEeCCCCCcEEEEecCCeEEEEEccCCC----cc
Q 019059 142 -------------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLS-GGAWDPHDVNAVAATCESSVQFWDLRSMG----KT 203 (346)
Q Consensus 142 -------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~ 203 (346)
++.+.+||+.++............ .... -+.|+-++.+++-. -...++|+++ ++. +.
T Consensus 94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~ 168 (561)
T COG5354 94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---YLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPF 168 (561)
T ss_pred ccChhhccCCccccCceeEEeccCceeEeeccccCCc---ccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCch
Confidence 235899999876533332222111 0122 56788877776644 3456999997 332 22
Q ss_pred ceeeccceeEEEeCCCCCc-EEEE-----ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecC----
Q 019059 204 NSIEHAHVRNVDYDTKKKH-LLVT-----AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT---- 273 (346)
Q Consensus 204 ~~~~~~~v~~~~~~~~~~~-~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~---- 273 (346)
..+...++...+|+|.++. .|+. .+..+++++|.+.. +..+.+..-....-..+.|.+.| .+|+.--.
T Consensus 169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~-~s~l~tk~lfk~~~~qLkW~~~g-~~ll~l~~t~~k 246 (561)
T COG5354 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK-NSVLVTKNLFKVSGVQLKWQVLG-KYLLVLVMTHTK 246 (561)
T ss_pred hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC-CCeeeeeeeEeecccEEEEecCC-ceEEEEEEEeee
Confidence 3333333999999998542 2332 45678899999885 44444333233344567899999 65544211
Q ss_pred -------CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEe--ecCCeEEEeee
Q 019059 274 -------DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASL--SYDGRVRNHML 344 (346)
Q Consensus 274 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~d~~v~vw~~ 344 (346)
...+.|++++. .-+.....-.++|.++.|.|.++ .+++. -.+..+.++++
T Consensus 247 snKsyfgesnLyl~~~~e--------------------~~i~V~~~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 247 SNKSYFGESNLYLLRITE--------------------RSIPVEKDLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFDL 305 (561)
T ss_pred cccceeccceEEEEeecc--------------------cccceeccccccceeeeecccCC-ceeEEecccccceeeccc
Confidence 24577777774 22222225577899999999887 34433 46777777776
Q ss_pred c
Q 019059 345 E 345 (346)
Q Consensus 345 ~ 345 (346)
.
T Consensus 306 r 306 (561)
T COG5354 306 R 306 (561)
T ss_pred c
Confidence 5
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.88 E-value=3.7e-06 Score=68.01 Aligned_cols=225 Identities=14% Similarity=0.097 Sum_probs=136.8
Q ss_pred cceEEeeecCCCCceEEEEeecCCcc-eEEEEecCcccCCCCCccceeeeeeeccCCceE--EEEeecCCCCcEEEE-e-
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESY-GAAIWQIPELYGQLNSPQLERIAALDAHVGKIN--CVLWWSSGRHDKLVS-I- 140 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~-~- 140 (346)
.....++.+|.....++.+ -..| ...+||.. .++....+....+.-+ .-.|++||+. ++++ .
T Consensus 5 ~RgH~~a~~p~~~~avafa---RRPG~~~~v~D~~---------~g~~~~~~~a~~gRHFyGHg~fs~dG~~-LytTEnd 71 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFA---RRPGTFALVFDCR---------TGQLLQRLWAPPGRHFYGHGVFSPDGRL-LYTTEND 71 (305)
T ss_pred ccccceeeCCCCCeEEEEE---eCCCcEEEEEEcC---------CCceeeEEcCCCCCEEecCEEEcCCCCE-EEEeccc
Confidence 4456778888666666553 2333 56788887 5555555544333322 3579999996 5555 2
Q ss_pred ---cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec------------------CCeEEEEEccC
Q 019059 141 ---DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC------------------ESSVQFWDLRS 199 (346)
Q Consensus 141 ---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~i~d~~~ 199 (346)
..|.|-|||...+ ..++... ..+--....+.+.||++.|+++-. +.+|...|..+
T Consensus 72 ~~~g~G~IgVyd~~~~--~~ri~E~--~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 72 YETGRGVIGVYDAARG--YRRIGEF--PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cCCCcEEEEEEECcCC--cEEEeEe--cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 2589999999832 1222111 112224466789999987776632 13466677788
Q ss_pred CCccceeec--c-c---eeEEEeCCCCCcEEEEecCCC-------eEEEEEcccCCcceeee-------cCCCcceEEEE
Q 019059 200 MGKTNSIEH--A-H---VRNVDYDTKKKHLLVTAADES-------GIHLWDLRMLKAPIQEL-------PGHTHWTWAVC 259 (346)
Q Consensus 200 ~~~~~~~~~--~-~---v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~-------~~~~~~v~~v~ 259 (346)
++.+.+... . | ++.+++.++|. .++..-..| -|-+++... .+..+ ..-.+.+-+|+
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEE
Confidence 887666432 2 2 99999999996 444333222 233333222 22222 22346789999
Q ss_pred eCCCCCcEE-EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeec
Q 019059 260 CNPEYDGFI-LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSY 335 (346)
Q Consensus 260 ~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (346)
+++++ .++ +|+-.-+.+.+||..+ +..+....-.. +..++-.+++ ++++.+.
T Consensus 224 ~~~~g-~~ia~tsPrGg~~~~~d~~t-------------------g~~~~~~~l~D--~cGva~~~~~--f~~ssG~ 276 (305)
T PF07433_consen 224 ADRDG-RLIAVTSPRGGRVAVWDAAT-------------------GRLLGSVPLPD--ACGVAPTDDG--FLVSSGQ 276 (305)
T ss_pred EeCCC-CEEEEECCCCCEEEEEECCC-------------------CCEeeccccCc--eeeeeecCCc--eEEeCCC
Confidence 99999 555 5555678999999998 77766554333 5677777665 5555554
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.87 E-value=2.6e-06 Score=73.78 Aligned_cols=212 Identities=10% Similarity=0.031 Sum_probs=121.4
Q ss_pred CCcceEEEEecCcccCCCCCccceeeeeeeccCCce-----EEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec
Q 019059 88 GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKI-----NCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK 162 (346)
Q Consensus 88 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~ 162 (346)
..++.+..+|.+ +++.+-.+......+ .+... .++ .++++..++.+..+|+.+++........
T Consensus 152 ~~~g~l~a~d~~---------tG~~~W~~~~~~~~~~~~~~~sp~~-~~~--~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 152 TNDGRLTALDAA---------TGERLWTYSRVTPALTLRGSASPVI-ADG--GVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred CCCCeEEEEEcC---------CCceeeEEccCCCceeecCCCCCEE-ECC--EEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 467889999987 444433332221111 11111 123 3666666889999999877654432211
Q ss_pred ccCCCc--ee---e-EEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEE
Q 019059 163 QSSGML--HY---L-SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLW 236 (346)
Q Consensus 163 ~~~~~~--~~---v-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 236 (346)
...+.. .. + ....+ .+..+++++.++.++.+|.++++............+.. .+. .+++++.+|.+..+
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~--~~~-~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV--DDN-RLYVTDADGVVVAL 294 (377)
T ss_pred cCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE--eCC-EEEEECCCCeEEEE
Confidence 100000 00 0 01111 24578888889999999999988665444222222222 344 56777889999999
Q ss_pred EcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc
Q 019059 237 DLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED 315 (346)
Q Consensus 237 d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (346)
|..+ ++.+-...... ....+... .+ ..|++++.+|.|+++|..+ ++.+..+..+..
T Consensus 295 d~~t-G~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~t-------------------G~~~~~~~~~~~ 351 (377)
T TIGR03300 295 DRRS-GSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSRED-------------------GSFVARLKTDGS 351 (377)
T ss_pred ECCC-CcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCC-------------------CCEEEEEEcCCC
Confidence 9986 33343332111 11222222 34 6788899999999999988 777777665553
Q ss_pred eee-EEEeCCCCCcEEEEeecCCeEEEe
Q 019059 316 SVY-GLAWSSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 316 ~v~-~~~~~~~~~~~l~s~~~d~~v~vw 342 (346)
.+. +..+. ++ .|..++.||.|+.+
T Consensus 352 ~~~~sp~~~-~~--~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 352 GIASPPVVV-GD--GLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCCEEE-CC--EEEEEeCCceEEEe
Confidence 322 22332 33 36678889988765
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=4.6e-09 Score=58.15 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=35.4
Q ss_pred ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
+++.++.+|.+.|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 56788999999999999999986 999999999999997
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=4.6e-07 Score=80.13 Aligned_cols=238 Identities=12% Similarity=0.071 Sum_probs=159.1
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCC----------CCc
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSG----------RHD 135 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~ 135 (346)
..-.++.|+|.| .++.+ ....|.|-|.. +.+.++.+..|...|+.+.|.|-. .++
T Consensus 16 sN~~A~Dw~~~G-LiAyg-----shslV~VVDs~---------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~l 80 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYG-----SHSLVSVVDSR---------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQL 80 (1062)
T ss_pred ccccccccCccc-eEEEe-----cCceEEEEehh---------hhhhhhccccCccceeEEEeccCCCchhccCccccce
Confidence 345678999966 44442 44578888877 789999999999999999998631 344
Q ss_pred EEEEe-cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC---CC-CcEEEEecCCeEEEEEccCCCccceeeccc
Q 019059 136 KLVSI-DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP---HD-VNAVAATCESSVQFWDLRSMGKTNSIEHAH 210 (346)
Q Consensus 136 ~~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 210 (346)
+++++ ..|.|.+||.........+.. +..++..++|-+ +. ..|++......|.+|+..+|+.......++
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~-----~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~ 155 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSH-----SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH 155 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcC-----CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC
Confidence 55654 379999999986654433332 344677777754 34 346666778899999999999887777666
Q ss_pred --eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC---cceeeec---CCCc----------------c---------eEE
Q 019059 211 --VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK---APIQELP---GHTH----------------W---------TWA 257 (346)
Q Consensus 211 --v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~---~~~~----------------~---------v~~ 257 (346)
..|+.++|.+...+..-+..|.+-+.+.-... .+.+.++ .|.. . ...
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 67799999776555555566777666543211 1222221 1111 0 123
Q ss_pred EEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCC-cEEEEeecC
Q 019059 258 VCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREP-WIFASLSYD 336 (346)
Q Consensus 258 v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d 336 (346)
++|+|.- +-++-......+.|+|++. ..++.+..-.++.+.-+.|-|+.+ ..|...-.|
T Consensus 236 faf~p~~-rn~lfi~~prellv~dle~-------------------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~n 295 (1062)
T KOG1912|consen 236 FAFSPHW-RNILFITFPRELLVFDLEY-------------------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSN 295 (1062)
T ss_pred hhcChhh-hceEEEEeccceEEEcchh-------------------hceeEEEEeccCCcceeEeccCCCcceEEEEecC
Confidence 5567766 3333344456799999997 667776666666666678877654 257777889
Q ss_pred CeEEEee
Q 019059 337 GRVRNHM 343 (346)
Q Consensus 337 ~~v~vw~ 343 (346)
|.+.+|-
T Consensus 296 G~ltirv 302 (1062)
T KOG1912|consen 296 GRLTIRV 302 (1062)
T ss_pred CeEEEEE
Confidence 9999884
No 302
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.87 E-value=1.2e-05 Score=67.49 Aligned_cols=192 Identities=8% Similarity=0.032 Sum_probs=126.4
Q ss_pred EeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-cc---CCCceeeEE---E-EeCC-CCCcEEEEecCCeEEEEEc
Q 019059 127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QS---SGMLHYLSG---G-AWDP-HDVNAVAATCESSVQFWDL 197 (346)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~---~~~~~~v~~---~-~~~~-~~~~l~~~~~d~~i~i~d~ 197 (346)
..+.||+.+++. ..|.|.+||.++... .++... .. ......+.- + .|++ +|.+++..+ .|...+.+.
T Consensus 273 ~~nsDGkrIvFq--~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~ 348 (668)
T COG4946 273 NANSDGKRIVFQ--NAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRP 348 (668)
T ss_pred ccCCCCcEEEEe--cCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECC
Confidence 346788863333 468999999886542 222221 10 000001111 1 1332 466666665 566777665
Q ss_pred cCCCccceeeccceeEEEeCCCCCcEEEEecCCC-eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059 198 RSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADES-GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 198 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
..+-.+..-..+.|.-..+..+++ -++.|..|| .+-++|.+. . .+..+...-+.|.++..+|+| .+++.+.....
T Consensus 349 ~~~~~iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~-~-e~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~e 424 (668)
T COG4946 349 WDGYSIQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDG-G-EVKRIEKDLGNIEAVKVSPDG-KKVVVANDRFE 424 (668)
T ss_pred CCCeeEEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCC-c-eEEEeeCCccceEEEEEcCCC-cEEEEEcCceE
Confidence 544433222222277777776766 678888888 899999985 3 466777778899999999999 99999998889
Q ss_pred EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCC----eEEEeeecC
Q 019059 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG----RVRNHMLEK 346 (346)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~v~vw~~~~ 346 (346)
|.+.|+.+ +.....-+...+-|+.++|+|+++ .+|-+--+| .|+++|+++
T Consensus 425 l~vididn-------------------gnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 425 LWVIDIDN-------------------GNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEEEecC-------------------CCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCC
Confidence 99999998 555444455667899999999997 677655444 588888764
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=8.6e-09 Score=57.02 Aligned_cols=38 Identities=21% Similarity=0.492 Sum_probs=35.7
Q ss_pred cceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEe
Q 019059 243 APIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281 (346)
Q Consensus 243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd 281 (346)
+++.++.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 3678899999999999999999 9999999999999997
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.83 E-value=2.4e-06 Score=69.21 Aligned_cols=195 Identities=13% Similarity=0.108 Sum_probs=118.7
Q ss_pred EEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC-CCCCcEEEEecCCeEEEEEccCCCcc
Q 019059 125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD-PHDVNAVAATCESSVQFWDLRSMGKT 203 (346)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~ 203 (346)
++.|.+....++++....+.|..|+..++.. ...... ...++++. ++ ..++++... .+.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~------~~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLP------GPNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESS------SEEEEEEECTT-SEEEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecC------CCceEEEEccC-CEEEEEEcC-ceEEEecCCCcEE
Confidence 5788884444555555689999999886532 221111 26677777 55 555555544 4566698887543
Q ss_pred ceeec---c--c--eeEEEeCCCCCcEEEEecCC--------CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEE
Q 019059 204 NSIEH---A--H--VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI 268 (346)
Q Consensus 204 ~~~~~---~--~--v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l 268 (346)
..... . . ++.+++.|+|. +.++.... |.|..++.. . .+..+...-...+.|+|+|++..++
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~-~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--G-KVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--S-EEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--C-eEEEEecCcccccceEECCcchhee
Confidence 33322 1 2 99999999998 77765533 456666655 2 2333333345678999999993344
Q ss_pred EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 269 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
++-+..+.|..+++....... ...+....+....+..-.+++.++|. +.++.-..+.|.+++.++
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~------------~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGEL------------SNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCE------------EEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS
T ss_pred ecccccceeEEEeccccccce------------eeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc
Confidence 567778899999987411000 00112222333333478899999996 777777788899988653
No 305
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.82 E-value=2.9e-09 Score=91.62 Aligned_cols=200 Identities=19% Similarity=0.299 Sum_probs=131.4
Q ss_pred CceEEEEeecCCC-CcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc-EEEEe----cCCeEEE
Q 019059 121 GKINCVLWWSSGR-HDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN-AVAAT----CESSVQF 194 (346)
Q Consensus 121 ~~i~~~~~~~~~~-~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~----~d~~i~i 194 (346)
..+.|+++.-+.. .++.+|..+|.|.+-.++......... .+++...+++++|++-+.. |++|- .|..+.|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~---tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV---TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccccccee---cccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 3466777665544 456666668999998887544331111 2345668999999986544 55543 2678999
Q ss_pred EEccCC--Ccc--ceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcE
Q 019059 195 WDLRSM--GKT--NSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGF 267 (346)
Q Consensus 195 ~d~~~~--~~~--~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 267 (346)
||+.++ .+. ..+..+. ..+++|..+.+ ++.+|.....++++|+|........+ .+..+..+..+|-.+.+
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY 210 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence 999977 222 1222212 78899998877 89999999999999999533222222 34566777788854478
Q ss_pred EEEecCCCeEEEEec-CCCCCCCCCcccccCCcccccccccccccccc----ceeeEEEeCCCCCcEEEEeec-CCeEEE
Q 019059 268 ILSAGTDSTVNLWLV-STSNHDELPSESLVESPNQRANSLLNSYSDYE----DSVYGLAWSSREPWIFASLSY-DGRVRN 341 (346)
Q Consensus 268 l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~-d~~v~v 341 (346)
+++-. |+.|.+||. +. -..++..+.... ..+..++|.|....++++... .++|++
T Consensus 211 ~cs~~-dg~iAiwD~~rn------------------ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRN------------------IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL 271 (783)
T ss_pred eeccc-cCceeeccchhh------------------hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence 88777 899999994 33 123333332222 248899999976667777775 467888
Q ss_pred eeec
Q 019059 342 HMLE 345 (346)
Q Consensus 342 w~~~ 345 (346)
+++.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 8763
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2.6e-06 Score=76.41 Aligned_cols=196 Identities=11% Similarity=0.074 Sum_probs=125.6
Q ss_pred eecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC-----eEE
Q 019059 72 SSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE-----NIF 146 (346)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~-----~i~ 146 (346)
+|++.+..++.+ ..+|.|.+.+- ..+.++.++.+...|...-|.-+++.++++-++|+ .++
T Consensus 30 c~~s~~~~vvig----t~~G~V~~Ln~----------s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 30 CCSSSTGSVVIG----TADGRVVILNS----------SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred EEcCCCceEEEe----eccccEEEecc----------cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence 356767777664 68887777664 35666788888777555555556654455445543 589
Q ss_pred EEEcCCCCCCc--------eeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEcc----CCCccceeeccc--ee
Q 019059 147 LWSLDCSNKNA--------QVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR----SMGKTNSIEHAH--VR 212 (346)
Q Consensus 147 vwd~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~--v~ 212 (346)
+|+++...... .......+-...++..++.+.+-..+++|-.+|.|..+.-. .+....-...+. |+
T Consensus 96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 99998642222 11111122234578888999888888999899999887422 111111111222 99
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.+++..++...++++. -..|.+|.+.........+..|...++|..+++.. ..|++++. ..+.+|+...
T Consensus 176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-YQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred eeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCC-ccEEEecC-ceEEEEcCCC
Confidence 9999998884334433 35899999985331244477788899999999877 44555543 4599999886
No 307
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.3e-06 Score=72.97 Aligned_cols=114 Identities=13% Similarity=0.310 Sum_probs=78.4
Q ss_pred eeeEEEEeCCCCCcEEEEec---CCeEEEEEccC-C---CccceeeccceeEEEeCCCCCcEEEE--ecCCCeEEEEEcc
Q 019059 169 HYLSGGAWDPHDVNAVAATC---ESSVQFWDLRS-M---GKTNSIEHAHVRNVDYDTKKKHLLVT--AADESGIHLWDLR 239 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~-~---~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~ 239 (346)
..+...+|-|.|..+++.+. ..++.+|-+++ . +.+..+...+.+.+.|+|.|+++++. ++..|.+..+|+.
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 36788899999988776653 46899998883 2 23444443339999999999944433 2457899999987
Q ss_pred cCCcceeeecCCCcceEEEEeCCCCCcEEEEecC------CCeEEEEecCC
Q 019059 240 MLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT------DSTVNLWLVST 284 (346)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~------d~~i~iwd~~~ 284 (346)
...........| ...+.+.|.|.| +|+++++. |.--+||+++.
T Consensus 526 ~a~~k~~~~~eh-~~at~veWDPtG-RYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 526 YADLKDTASPEH-FAATEVEWDPTG-RYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred hhhhhhccCccc-cccccceECCCC-CEEEEeeehhhhccccceEEEEeec
Confidence 422111112223 345789999999 99999875 45577888764
No 308
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.76 E-value=1.3e-06 Score=75.55 Aligned_cols=166 Identities=10% Similarity=0.134 Sum_probs=108.4
Q ss_pred eeeeeeeccCCceEEEEeecCCCCcEEEEec--C-CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe
Q 019059 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSID--E-ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT 187 (346)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 187 (346)
.....+......+..-+|+|++..+....-. . ..+.+++++++.......... .-...+|+|||+.++...
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g------~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG------NNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC------ccCCccCCCCCCEEEEEE
Confidence 3444454556677888999999987666632 2 369999999877554443221 344568999999988776
Q ss_pred c-CC--eEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCC
Q 019059 188 C-ES--SVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNP 262 (346)
Q Consensus 188 ~-d~--~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~ 262 (346)
. |+ .|+++|+..+...+ +.... -..-.|+|+|++++++.+..|.-.||-..........+......-....|+|
T Consensus 257 ~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp 335 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP 335 (425)
T ss_pred CCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCC
Confidence 4 44 57778888777433 44333 4578999999988888888886555544433333444444343334778999
Q ss_pred CCCcEEEEecC-CCe--EEEEecCC
Q 019059 263 EYDGFILSAGT-DST--VNLWLVST 284 (346)
Q Consensus 263 ~~~~~l~s~~~-d~~--i~iwd~~~ 284 (346)
+| .+|+..+. +|. |.+.|+.+
T Consensus 336 dG-~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 336 DG-DKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CC-CEEEEEeccCCceeeEEeccCC
Confidence 99 66665553 344 66666655
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=1.4e-06 Score=77.26 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=145.2
Q ss_pred CeEEEEEecCCCCeEEEeeeeccccceEEeeecCC-----------CCceEEEEeecCCcceEEEEecCcccCCCCCccc
Q 019059 42 NEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPF-----------DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL 110 (346)
Q Consensus 42 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~ 110 (346)
+.|.+++.-.- .....+.-|+..|+.+.|.|. ...+++. +.-.|.|.+||.. ..
T Consensus 35 slV~VVDs~s~---q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs---aD~~GrIil~d~~---------~~ 99 (1062)
T KOG1912|consen 35 SLVSVVDSRSL---QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS---ADISGRIILVDFV---------LA 99 (1062)
T ss_pred ceEEEEehhhh---hhhhccccCccceeEEEeccCCCchhccCccccceeEEe---ccccCcEEEEEeh---------hh
Confidence 34555543332 233556678899999999873 1233343 4677999999997 55
Q ss_pred eeeeeeeccCCceEEEEeec---CCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEE
Q 019059 111 ERIAALDAHVGKINCVLWWS---SGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAA 186 (346)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 186 (346)
..+..+..|..++..++|-+ +.++++++-.....+.+|+..+++...+..... ....++.+.| |.+++..-
T Consensus 100 s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-----~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 100 SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-----EILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-----cceeeeeeCCCCcceEEEE
Confidence 66667878889999999965 344555555567899999999888666554322 2566688888 44556666
Q ss_pred ecCCeEEEEEccCCCc----c--ceeecc----------------------c------eeEEEeCCCCCcEEEEecCCCe
Q 019059 187 TCESSVQFWDLRSMGK----T--NSIEHA----------------------H------VRNVDYDTKKKHLLVTAADESG 232 (346)
Q Consensus 187 ~~d~~i~i~d~~~~~~----~--~~~~~~----------------------~------v~~~~~~~~~~~~l~~~~~dg~ 232 (346)
+..|.+.+.+.-..+. . ..+... . ...++|+|.-++.++.. ....
T Consensus 175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~pre 253 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRE 253 (1062)
T ss_pred ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccc
Confidence 6677776665432110 0 111101 0 33467788766555544 3467
Q ss_pred EEEEEcccCCcceeeecCCCcceEEEEeCCCCC-cEEEEecCCCeEEEEecCC
Q 019059 233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD-GFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~l~s~~~d~~i~iwd~~~ 284 (346)
+.++|++- ..++.......+.+.-+.+-|++. ..|++.-.||.+.+|-.+.
T Consensus 254 llv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 254 LLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 99999986 556766665566666677777662 5788999999999997765
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.73 E-value=1.3e-05 Score=74.82 Aligned_cols=201 Identities=10% Similarity=0.101 Sum_probs=121.3
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeE
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENI 145 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i 145 (346)
+.|.++.|..+...++.+. ..|.|.+-|.+ + ..+.....-...|.+++|+||+..+.++++ .+++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~----~~G~iilvd~e---------t-~~~eivg~vd~GI~aaswS~Dee~l~liT~-~~tl 133 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVIT----ALGDIILVDPE---------T-LELEIVGNVDNGISAASWSPDEELLALITG-RQTL 133 (1265)
T ss_pred cceEEEEEecccceEEEEe----cCCcEEEEccc---------c-cceeeeeeccCceEEEeecCCCcEEEEEeC-CcEE
Confidence 5899999998888777763 66777777765 2 222233334678999999999996555554 4555
Q ss_pred EEEEc----CCCCCC-------ceee----------ecccC---------------C---CceeeEEEEeCCCCCcEEEE
Q 019059 146 FLWSL----DCSNKN-------AQVQ----------SKQSS---------------G---MLHYLSGGAWDPHDVNAVAA 186 (346)
Q Consensus 146 ~vwd~----~~~~~~-------~~~~----------~~~~~---------------~---~~~~v~~~~~~~~~~~l~~~ 186 (346)
.+-+- -..+.. .+.. ..... + ....=..+.|--||+++++.
T Consensus 134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs 213 (1265)
T KOG1920|consen 134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVS 213 (1265)
T ss_pred EEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEE
Confidence 44321 111100 0000 00000 0 11122458999999988875
Q ss_pred e----cC-CeEEEEEccCCCccceeec-cc-eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCC--cceeeecCCCcc
Q 019059 187 T----CE-SSVQFWDLRSMGKTNSIEH-AH-VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLK--APIQELPGHTHW 254 (346)
Q Consensus 187 ~----~d-~~i~i~d~~~~~~~~~~~~-~~-v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~--~~~~~~~~~~~~ 254 (346)
. .+ ..|++||.+ +..-..-.+ .. -.+++|-|.|. ++++-. .|+.|.+|.-.-.. .-...+.....+
T Consensus 214 ~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ 291 (1265)
T KOG1920|consen 214 FVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKE 291 (1265)
T ss_pred EEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCcccccc
Confidence 4 24 799999988 432222111 11 67899999998 777643 44578888743211 111122233345
Q ss_pred eEEEEeCCCCCcEEEE---ecCCCeEEEEecCC
Q 019059 255 TWAVCCNPEYDGFILS---AGTDSTVNLWLVST 284 (346)
Q Consensus 255 v~~v~~~~~~~~~l~s---~~~d~~i~iwd~~~ 284 (346)
+..++|+.++ ..||+ ......|++|-+..
T Consensus 292 ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 292 VEELAWNSNS-DILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred hheeeecCCC-CceeeeecccccceEEEEEecC
Confidence 8999999999 88887 44555699998875
No 311
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.70 E-value=2e-06 Score=74.38 Aligned_cols=200 Identities=15% Similarity=0.164 Sum_probs=118.6
Q ss_pred eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (346)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (346)
+..-.+.++..+++.-++.......++++++.......... ..+.-...+|+|+|+.|+.+. ..|+...||-+
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fspDG~~l~f~~---~rdg~~~iy~~ 267 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSPDGSKLAFSS---SRDGSPDIYLM 267 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCCCCCEEEEEE---CCCCCccEEEE
Confidence 33345677788877776655444578888888765444322 334445679999999998874 55666555544
Q ss_pred CcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCe--EEEEEcCCCCCCceeeecccCCCceeeEEEEe
Q 019059 99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEEN--IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAW 176 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 176 (346)
+. ..+.+..+....+.-..-.|+|||+++++++...|. |.+++++.... ..+.. ... .-..-.|
T Consensus 268 dl--------~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~-~~~----~~~~p~~ 333 (425)
T COG0823 268 DL--------DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF-SGG----GNSNPVW 333 (425)
T ss_pred cC--------CCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec-cCC----CCcCccC
Confidence 42 112233343333334467899999998888866555 55555554332 22222 111 1125689
Q ss_pred CCCCCcEEEEec-CCe--EEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059 177 DPHDVNAVAATC-ESS--VQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLR 239 (346)
Q Consensus 177 ~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 239 (346)
+|+|+.++..+. +|. |.+.|+.++...+.+.... .....|.+++..++...+.-+.=.++.+.
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s 400 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVS 400 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCCCCceEEEee
Confidence 999999888774 343 7777777666544444333 66778888888444444333333344333
No 312
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.70 E-value=4.5e-05 Score=60.83 Aligned_cols=203 Identities=12% Similarity=0.169 Sum_probs=115.0
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-CCceEEEEeecCCCCcEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKL 137 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~ 137 (346)
+.+.+-...+.+++|.|+...|+++. +..+.|...+.+ ++.++.+.-. .+..-.+++..++. ++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~---d~~~~i~els~~----------G~vlr~i~l~g~~D~EgI~y~g~~~--~v 79 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQ---DEPGEIYELSLD----------GKVLRRIPLDGFGDYEGITYLGNGR--YV 79 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEE---TTTTEEEEEETT------------EEEEEE-SS-SSEEEEEE-STTE--EE
T ss_pred eECCCccCCccccEEcCCCCeEEEEE---CCCCEEEEEcCC----------CCEEEEEeCCCCCCceeEEEECCCE--EE
Confidence 34445566799999999999898884 667777666653 5666665433 35678899987776 44
Q ss_pred EE-ecCCeEEEEEcCCCCCCcee------eecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC---CCccceee
Q 019059 138 VS-IDEENIFLWSLDCSNKNAQV------QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS---MGKTNSIE 207 (346)
Q Consensus 138 ~~-~~d~~i~vwd~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~ 207 (346)
.+ -.++.+.++++......... ...........+.+++|+|.++.++++-...-..+|.++. ........
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 44 34899999998543322111 1111223445689999999988888887776666776654 21111111
Q ss_pred -------ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC---------cceEEEEeCCCCCcEE
Q 019059 208 -------HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT---------HWTWAVCCNPEYDGFI 268 (346)
Q Consensus 208 -------~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~~l 268 (346)
... +.+++++|....+++....+..|..+|.. ++++..+.-.. ...-.|+|.++| .+.
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LY 236 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLY 236 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT---EE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCC-CEE
Confidence 001 88999999988788888888999999944 44554443221 346789999998 544
Q ss_pred EEecCCCeEEEE
Q 019059 269 LSAGTDSTVNLW 280 (346)
Q Consensus 269 ~s~~~d~~i~iw 280 (346)
+ .++-+..++|
T Consensus 237 I-vsEpNlfy~f 247 (248)
T PF06977_consen 237 I-VSEPNLFYRF 247 (248)
T ss_dssp E-EETTTEEEEE
T ss_pred E-EcCCceEEEe
Confidence 4 4455555544
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.64 E-value=1.7e-05 Score=64.21 Aligned_cols=204 Identities=9% Similarity=0.042 Sum_probs=121.7
Q ss_pred ceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----CCeEEEE
Q 019059 122 KINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFW 195 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~ 195 (346)
....++.+|.....++.+-. .....+||..+++....+.... ..| .--.-.|++||++|++.-+ .|.|-||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-gRH--FyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-GRH--FYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-CCE--EecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 34567788866654444433 4577889998877655443322 111 2234579999999999864 4899999
Q ss_pred Ecc-CCCccceeeccc--eeEEEeCCCCCcEEEEecC-------CC-----------eEEEEEcccCCcceee--e--cC
Q 019059 196 DLR-SMGKTNSIEHAH--VRNVDYDTKKKHLLVTAAD-------ES-----------GIHLWDLRMLKAPIQE--L--PG 250 (346)
Q Consensus 196 d~~-~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~-------dg-----------~i~i~d~~~~~~~~~~--~--~~ 250 (346)
|.. +-+.+.++...- ...+.+.|+++ .|+++.. .| .+...|.++ +..+.+ + ..
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELPPDL 160 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecCccc
Confidence 999 445666665222 88889999997 4444321 12 233445554 334443 3 23
Q ss_pred CCcceEEEEeCCCCCcEEEEecCCC-------eEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeC
Q 019059 251 HTHWTWAVCCNPEYDGFILSAGTDS-------TVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS 323 (346)
Q Consensus 251 ~~~~v~~v~~~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 323 (346)
|...|..+++.++| ..++..-..| -|.+++.... .. ....+......-.+.+-+|+++
T Consensus 161 ~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~-------------~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 161 HQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA-LR-------------LLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred cccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc-ce-------------eccCChHHHHhhCCceEEEEEe
Confidence 67788888898888 5444432222 1333332220 00 0000000112234568899999
Q ss_pred CCCCcEEEEeecCCeEEEeeec
Q 019059 324 SREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 324 ~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+++..+.+|+-..+.+.+||..
T Consensus 226 ~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 226 RDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred CCCCEEEEECCCCCEEEEEECC
Confidence 9998666777789999999864
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.62 E-value=1.1e-06 Score=79.10 Aligned_cols=182 Identities=13% Similarity=0.142 Sum_probs=126.8
Q ss_pred cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc-eeE
Q 019059 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRN 213 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~ 213 (346)
.++.|+....+..+|+++.+......... ..+.-+.. +++.+++|...|+|.+-|.++.+.++++. .| -.-
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a-----~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~si 220 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSA-----SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSI 220 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccC-----CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-ccccce
Confidence 36677777788888998765433332211 12444443 56889999999999999999999999998 66 333
Q ss_pred EEeCCCCCcEEEEecC---------CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 214 VDYDTKKKHLLVTAAD---------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 214 ~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.+|+-.|+ +|++++. |..|+|||+|+.+ .+..+.-+.++ .-+.|.|.-...+++++..|+..+-|..+
T Consensus 221 SDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 221 SDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeeeccCC-eEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence 44555676 7777663 4568999999854 34334333333 56789998878899999999999999543
Q ss_pred CCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 285 SNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
.... ..-++.+......+..+++++++. .|+-+..+|.|.+|.
T Consensus 298 lsNP---------------~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNP---------------PAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCC---------------ccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeec
Confidence 1000 112223333445599999999998 899999999999995
No 315
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.62 E-value=8.5e-05 Score=64.41 Aligned_cols=223 Identities=10% Similarity=-0.016 Sum_probs=121.6
Q ss_pred CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC
Q 019059 76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK 155 (346)
Q Consensus 76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 155 (346)
++..++++ +.++.+..+|.+ +++.+-..... ..+.+.-...++. +++...++.+..+|.++++.
T Consensus 104 ~~~~v~v~----~~~g~l~ald~~---------tG~~~W~~~~~-~~~~~~p~v~~~~--v~v~~~~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 104 DGGLVFVG----TEKGEVIALDAE---------DGKELWRAKLS-SEVLSPPLVANGL--VVVRTNDGRLTALDAATGER 167 (377)
T ss_pred cCCEEEEE----cCCCEEEEEECC---------CCcEeeeeccC-ceeecCCEEECCE--EEEECCCCeEEEEEcCCCce
Confidence 35556653 578899999986 45554333221 2222211112333 66666689999999988876
Q ss_pred CceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---------eeEEEeCC--CCCcEE
Q 019059 156 NAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDT--KKKHLL 224 (346)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------v~~~~~~~--~~~~~l 224 (346)
..+................... +..++++..++.+..+|+++++......... ...+.-+| .+. .+
T Consensus 168 ~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~v 244 (377)
T TIGR03300 168 LWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG-QV 244 (377)
T ss_pred eeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC-EE
Confidence 5554332110000000011111 2457777788999999999887654322110 00111111 233 56
Q ss_pred EEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccc
Q 019059 225 VTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRAN 304 (346)
Q Consensus 225 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
++++.+|.++.+|.++ ++.+-.... . ...... ..+ ..++.++.||.+..+|..+ +
T Consensus 245 y~~~~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~--~~~-~~vyv~~~~G~l~~~d~~t-------------------G 299 (377)
T TIGR03300 245 YAVSYQGRVAALDLRS-GRVLWKRDA-S-SYQGPA--VDD-NRLYVTDADGVVVALDRRS-------------------G 299 (377)
T ss_pred EEEEcCCEEEEEECCC-CcEEEeecc-C-CccCce--EeC-CEEEEECCCCeEEEEECCC-------------------C
Confidence 6677889999999986 433333321 1 111222 234 5777888899999999987 4
Q ss_pred ccccccccc-cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 305 SLLNSYSDY-EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 305 ~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+.+-..... .....+... .+. .+++++.+|.|+++|.+
T Consensus 300 ~~~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 300 SELWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSRE 338 (377)
T ss_pred cEEEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECC
Confidence 444332111 111122222 243 67778889999988864
No 316
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.60 E-value=1e-05 Score=74.27 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=93.3
Q ss_pred CCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC-------CCcEEEEecCCeEEEEEccCCC-
Q 019059 131 SGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-------DVNAVAATCESSVQFWDLRSMG- 201 (346)
Q Consensus 131 ~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~- 201 (346)
..+.+++.. .....|+-.|++.++......... ..+|.. +.|+ ....+.|-.+..|..||.|-..
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~----~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~ 564 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHD----DIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN 564 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcEEEEeecCC----CcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCC
Confidence 334444444 345788888888776443333322 112333 3332 2346777788999999999643
Q ss_pred -ccc----eeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC
Q 019059 202 -KTN----SIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS 275 (346)
Q Consensus 202 -~~~----~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~ 275 (346)
.+. .+.... ..|++-+.+| .+|+|+.+|.||+||-- ..+....+.+-..+|..|..+.|| ++|++.+ +.
T Consensus 565 k~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~t 639 (794)
T PF08553_consen 565 KLVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADG-KWILATC-KT 639 (794)
T ss_pred ceeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCC-cEEEEee-cc
Confidence 121 111112 8899988888 59999999999999943 344555666778999999999999 6555444 45
Q ss_pred eEEEEecCC
Q 019059 276 TVNLWLVST 284 (346)
Q Consensus 276 ~i~iwd~~~ 284 (346)
.|.+++...
T Consensus 640 yLlLi~t~~ 648 (794)
T PF08553_consen 640 YLLLIDTLI 648 (794)
T ss_pred eEEEEEEee
Confidence 788888754
No 317
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.59 E-value=2.8e-05 Score=62.65 Aligned_cols=209 Identities=12% Similarity=0.025 Sum_probs=119.5
Q ss_pred cceEEEEecCcccCCCCCccceeeeeeecc--CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059 90 SYGAAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (346)
Q Consensus 90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 167 (346)
++.|..+|.. +++.+-..... .....+.. .+++.+ ++++..++.+..||..+++...+........
T Consensus 2 ~g~l~~~d~~---------tG~~~W~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~- 69 (238)
T PF13360_consen 2 DGTLSALDPR---------TGKELWSYDLGPGIGGPVATA-VPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPIS- 69 (238)
T ss_dssp TSEEEEEETT---------TTEEEEEEECSSSCSSEEETE-EEETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGG-
T ss_pred CCEEEEEECC---------CCCEEEEEECCCCCCCccceE-EEeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccc-
Confidence 5678888876 55555554321 11222112 224443 6666679999999998887655554422110
Q ss_pred ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee-ecc----c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI-EHA----H-VRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (346)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~----~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (346)
.. . ...+..+++++.++.|+.+|..+++..... ... . .........+. .++.+..++.|..+|+++
T Consensus 70 --~~---~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~t- 141 (238)
T PF13360_consen 70 --GA---P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKT- 141 (238)
T ss_dssp --SG---E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTT-
T ss_pred --ce---e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCC-
Confidence 11 1 113566777778889999999999987764 211 1 11222222255 677777789999999997
Q ss_pred CcceeeecCCCcc----------e-EEEEeCCCCCcEEEEecCCCe-EEEEecCCCCCCCCCcccccCCccccccccccc
Q 019059 242 KAPIQELPGHTHW----------T-WAVCCNPEYDGFILSAGTDST-VNLWLVSTSNHDELPSESLVESPNQRANSLLNS 309 (346)
Q Consensus 242 ~~~~~~~~~~~~~----------v-~~v~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (346)
++.+-........ + ..+.+. ++ .++.++.++. +.+ |+.+ ++.+-.
T Consensus 142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~t-------------------g~~~w~ 198 (238)
T PF13360_consen 142 GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLAT-------------------GEKLWS 198 (238)
T ss_dssp TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTT-------------------TEEEEE
T ss_pred CcEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCC-------------------CCEEEE
Confidence 4455555443311 1 222233 33 5555666664 555 9988 554432
Q ss_pred cccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 310 YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 310 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.. ...+..+ ..+.+. .|+.++.++.|..||+.
T Consensus 199 ~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 199 KP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETT
T ss_pred ec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECC
Confidence 22 1223332 234555 56666689999999975
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.55 E-value=3.1e-06 Score=76.39 Aligned_cols=175 Identities=11% Similarity=0.108 Sum_probs=123.9
Q ss_pred cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC
Q 019059 87 TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG 166 (346)
Q Consensus 87 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 166 (346)
||-...+..+|+. ..+..+........|.-|+. +++ .+++|...|+|.+-|.++.+....+. .
T Consensus 153 Gg~Q~~li~~Dl~---------~~~e~r~~~v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s~~~iht~~-----a 215 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLN---------TEKETRTTNVSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNSFETIHTFD-----A 215 (1118)
T ss_pred cchhhheeeeecc---------cceeeeeeeccCCceEEEEe--cCc-EEEeecccceEEeecCCcCceeeeee-----c
Confidence 3455567777776 44554444434444555544 344 47777778999999998766444443 3
Q ss_pred CceeeEEEEeCCCCCcEEEEec---------CCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEE
Q 019059 167 MLHYLSGGAWDPHDVNAVAATC---------ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLW 236 (346)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~ 236 (346)
|...+..+.. .|+.|+++|. |..|+|||+|..+.+..+.... ..-+.|+|.-...+++++..|...+-
T Consensus 216 Hs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 216 HSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred cccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeec
Confidence 6667776554 6888888874 5668999999888776665333 66778888876688889999999999
Q ss_pred E---cccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEe
Q 019059 237 D---LRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281 (346)
Q Consensus 237 d---~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd 281 (346)
| +.++..-+..+......+..+.+++++ ..++.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 9 443322234444455669999999999 9999999999999997
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.1e-06 Score=72.98 Aligned_cols=208 Identities=12% Similarity=0.116 Sum_probs=139.3
Q ss_pred eccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec
Q 019059 62 FSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID 141 (346)
Q Consensus 62 ~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 141 (346)
+-|.+.|+.+.... .++++.+ +-||.++.|.-.. ..-.+.+..+..|-..|.+++.+-++. ++.+.+.
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqA----SlDGh~KFWkKs~------isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d 73 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQA----SLDGHKKFWKKSR------ISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVED 73 (558)
T ss_pred hcccceeeeEeeeh-hheEEee----ecchhhhhcCCCC------ccceeehhhhHHHHHHHHhhhccccce-eEeeccC
Confidence 34778888776554 4566665 6899999998541 012345556778889999999999887 3444466
Q ss_pred -CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC-CC-cEEEEe-cCCeEEEEEccCCCcc-ceeeccc---eeE
Q 019059 142 -EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH-DV-NAVAAT-CESSVQFWDLRSMGKT-NSIEHAH---VRN 213 (346)
Q Consensus 142 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~l~~~~-~d~~i~i~d~~~~~~~-~~~~~~~---v~~ 213 (346)
|..++++|+++-.....+.....++ .+.. ..++. .. .+++.. .++.+.++|-....+. ..+..-| |..
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL~~lPg---~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~ 149 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKLVDLPG---FAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKK 149 (558)
T ss_pred cccceeEEEeeccchhhhcccccCCC---ceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEE
Confidence 8999999998654333333322222 2221 22221 11 233333 5899999998866533 3333334 999
Q ss_pred EEeCCCCCcEEEEecCCCeEEEEEccc-CCcce-------------eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059 214 VDYDTKKKHLLVTAADESGIHLWDLRM-LKAPI-------------QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 279 (346)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------------~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i 279 (346)
+.+++.+. .+++....|.|.-|.... ...|. ..+........++.|+|++ ..+.+-+.|..|++
T Consensus 150 i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 150 IRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRG 227 (558)
T ss_pred EEeecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEE
Confidence 99999998 888888889999998762 11111 1112234567899999999 99999999999999
Q ss_pred EecCCCCC
Q 019059 280 WLVSTSNH 287 (346)
Q Consensus 280 wd~~~~~~ 287 (346)
++..+++.
T Consensus 228 F~~KtGkl 235 (558)
T KOG0882|consen 228 FVFKTGKL 235 (558)
T ss_pred EEeccchh
Confidence 99998754
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=1.1e-05 Score=69.87 Aligned_cols=69 Identities=12% Similarity=0.169 Sum_probs=59.7
Q ss_pred eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+.+.+++|+.+ .++.|+.||.|.+||... + +..+....-.++.++|+|+| .++++|+.-|.+.+||+..
T Consensus 262 v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 262 VICCARSPSED-KLVLGCEDGSIILYDTTR-G--VTLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ceEEecCcccc-eEEEEecCCeEEEEEcCC-C--eeeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeec
Confidence 99999999998 899999999999999875 2 33343455667899999999 9999999999999999976
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.53 E-value=1.1e-05 Score=69.90 Aligned_cols=116 Identities=9% Similarity=0.065 Sum_probs=79.8
Q ss_pred CceEEEEeecCCCCcEEEE----ecCCe----EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeE
Q 019059 121 GKINCVLWWSSGRHDKLVS----IDEEN----IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSV 192 (346)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~----~~d~~----i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 192 (346)
....++.|+-...+.+.+- +.+|. -.+|++..++ ....... .-.....+.+++++|+...++.|+.||.|
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvt-sipL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVT-SIPLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEE-EEecCCcceEEecCcccceEEEEecCCeE
Confidence 3446778876555545443 22343 2456665432 2222111 11234478999999999999999999999
Q ss_pred EEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059 193 QFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (346)
Q Consensus 193 ~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (346)
.+||...+..... ..+- ++.++|+|+|. ++++|+..|.+.+||+.-
T Consensus 284 iLyD~~~~~t~~~-ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 284 ILYDTTRGVTLLA-KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEcCCCeeeee-eecccceEEEEcCCCc-EEEEEcCCceEEEEEeec
Confidence 9999987643322 2222 89999999998 999999999999999864
No 322
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.51 E-value=4.4e-05 Score=65.36 Aligned_cols=231 Identities=15% Similarity=0.189 Sum_probs=121.9
Q ss_pred cCCCCceEEEEee-----cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059 74 CPFDQRIFSTVFS-----TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW 148 (346)
Q Consensus 74 ~~~~~~l~~~~~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vw 148 (346)
|||+++++..... -+..+.+.|+|++ +.+. ..+......+....|+|+|+. ++-..++.|.++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~---------~~~~-~~l~~~~~~~~~~~~sP~g~~--~~~v~~~nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIE---------TGEI-TPLTPPPPKLQDAKWSPDGKY--IAFVRDNNLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETT---------TTEE-EESS-EETTBSEEEE-SSSTE--EEEEETTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecC---------CCce-EECcCCccccccceeecCCCe--eEEEecCceEEE
Confidence 5777777664211 1234568889987 3222 233233667889999999995 333357899999
Q ss_pred EcCCCCCCceeeecccCC-------------CceeeEEEEeCCCCCcEEEEecC-Ce-----------------------
Q 019059 149 SLDCSNKNAQVQSKQSSG-------------MLHYLSGGAWDPHDVNAVAATCE-SS----------------------- 191 (346)
Q Consensus 149 d~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-~~----------------------- 191 (346)
+..++... .+....... ....-..+.|+||++.|+....| ..
T Consensus 69 ~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~ 147 (353)
T PF00930_consen 69 DLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR 147 (353)
T ss_dssp SSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE
T ss_pred ECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccc
Confidence 88765321 111111000 01133667899999988865432 11
Q ss_pred ------------EEEEEccCCCccc-eee-----ccc-eeEEEeCCCCCcE-EEEecCCC---eEEEEEcccCCcceeee
Q 019059 192 ------------VQFWDLRSMGKTN-SIE-----HAH-VRNVDYDTKKKHL-LVTAADES---GIHLWDLRMLKAPIQEL 248 (346)
Q Consensus 192 ------------i~i~d~~~~~~~~-~~~-----~~~-v~~~~~~~~~~~~-l~~~~~dg---~i~i~d~~~~~~~~~~~ 248 (346)
+.++|+.+++... ... ..+ +..+.|.+++..+ +.....+. .+.++|..+....+...
T Consensus 148 YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~ 227 (353)
T PF00930_consen 148 YPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE 227 (353)
T ss_dssp --BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred cCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence 5567776665432 111 112 8999999998722 22333332 46677776533222111
Q ss_pred cCCCcce---EEEEeC-CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE-EEeC
Q 019059 249 PGHTHWT---WAVCCN-PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG-LAWS 323 (346)
Q Consensus 249 ~~~~~~v---~~v~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~ 323 (346)
......| ....|. +++..+|.....||.-+||-+.. .+.....+....-.|.. +.|+
T Consensus 228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~------------------~~~~~~~lT~G~~~V~~i~~~d 289 (353)
T PF00930_consen 228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL------------------DGGKPRQLTSGDWEVTSILGWD 289 (353)
T ss_dssp EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET------------------TSSEEEESS-SSS-EEEEEEEE
T ss_pred ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc------------------cccceeccccCceeecccceEc
Confidence 2222333 245554 66656777777888555554433 12323344444444644 6788
Q ss_pred CCCCcEEEEeec
Q 019059 324 SREPWIFASLSY 335 (346)
Q Consensus 324 ~~~~~~l~s~~~ 335 (346)
++++.++.++..
T Consensus 290 ~~~~~iyf~a~~ 301 (353)
T PF00930_consen 290 EDNNRIYFTANG 301 (353)
T ss_dssp CTSSEEEEEESS
T ss_pred CCCCEEEEEecC
Confidence 887766666664
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.2e-05 Score=71.81 Aligned_cols=143 Identities=10% Similarity=0.063 Sum_probs=102.4
Q ss_pred CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (346)
...+.|++++. + .++.+..+|.|++++....- .... .|... ..+|.++++++.||++.|-.+-+
T Consensus 39 ~D~is~~av~~--~-~~~~GtH~g~v~~~~~~~~~--~~~~-----~~s~~------~~~Gey~asCS~DGkv~I~sl~~ 102 (846)
T KOG2066|consen 39 NDAISCCAVHD--K-FFALGTHRGAVYLTTCQGNP--KTNF-----DHSSS------ILEGEYVASCSDDGKVVIGSLFT 102 (846)
T ss_pred hhHHHHHHhhc--c-eeeeccccceEEEEecCCcc--cccc-----ccccc------ccCCceEEEecCCCcEEEeeccC
Confidence 34566666653 2 46677778999999987431 1111 11111 55799999999999999999998
Q ss_pred CCccceeeccc-eeEEEeCCC-----CCcEEEEecCCCeEEEEEcccCCccee-eecCCCcceEEEEeCCCCCcEEEEec
Q 019059 200 MGKTNSIEHAH-VRNVDYDTK-----KKHLLVTAADESGIHLWDLRMLKAPIQ-ELPGHTHWTWAVCCNPEYDGFILSAG 272 (346)
Q Consensus 200 ~~~~~~~~~~~-v~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~s~~ 272 (346)
.+...++.... +.+++++|+ .+ .+++|+.-| +.++.-+-.+.... .+..-.++|.++.|.. .++|-++
T Consensus 103 ~~~~~~~df~rpiksial~Pd~~~~~sk-~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIAWan 177 (846)
T KOG2066|consen 103 DDEITQYDFKRPIKSIALHPDFSRQQSK-QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIAWAN 177 (846)
T ss_pred CccceeEecCCcceeEEeccchhhhhhh-heeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEEEEec
Confidence 88877776455 999999998 23 688888877 77776443222222 3555678999999964 7899999
Q ss_pred CCCeEEEEecCC
Q 019059 273 TDSTVNLWLVST 284 (346)
Q Consensus 273 ~d~~i~iwd~~~ 284 (346)
.+| |++||+.+
T Consensus 178 d~G-v~vyd~~~ 188 (846)
T KOG2066|consen 178 DDG-VKVYDTPT 188 (846)
T ss_pred CCC-cEEEeccc
Confidence 887 99999987
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.51 E-value=7.7e-05 Score=64.99 Aligned_cols=227 Identities=13% Similarity=0.111 Sum_probs=114.7
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
+.+....-....+.++|+++.++++ .+|...|+... ...... .+.-....|.+.++ +++
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-----g~geY~iyt~~---------~~r~k~-----~G~g~~~vw~~~n~--yAv 84 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-----GDGEYEIYTAL---------AWRNKA-----FGSGLSFVWSSRNR--YAV 84 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-----ETTEEEEEETT---------TTEEEE-----EEE-SEEEE-TSSE--EEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-----cCCEEEEEEcc---------CCcccc-----cCceeEEEEecCcc--EEE
Confidence 3444444567889999999888874 66677777743 222221 23456788998766 455
Q ss_pred EecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccceeEEEeCC
Q 019059 139 SIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDT 218 (346)
Q Consensus 139 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~ 218 (346)
-...+.|.++.--+......+.... .+..+-. |..|+..+ ++.|.+||..+++.++.+....|..+.|++
T Consensus 85 ~~~~~~I~I~kn~~~~~~k~i~~~~------~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~ 154 (443)
T PF04053_consen 85 LESSSTIKIYKNFKNEVVKSIKLPF------SVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSD 154 (443)
T ss_dssp E-TTS-EEEEETTEE-TT-----SS-------EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-T
T ss_pred EECCCeEEEEEcCccccceEEcCCc------ccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEEC
Confidence 4447889996332222222222211 2333322 67666665 448999999999999888744489999999
Q ss_pred CCCcEEEEecCCCeEEEEEcccC----------CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCC
Q 019059 219 KKKHLLVTAADESGIHLWDLRML----------KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHD 288 (346)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 288 (346)
++. +++..+.+ .+.+++.... ......+......|.+..|..+ -+++|... .++- +-.
T Consensus 155 ~g~-~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkY--l~~---- 222 (443)
T PF04053_consen 155 DGE-LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKY--LVN---- 222 (443)
T ss_dssp TSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEE--EET----
T ss_pred CCC-EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEE--EEc----
Confidence 998 66666554 6777765431 0023333322467788888765 34444443 5655 221
Q ss_pred CCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
+ ....+..-..++.=+.+.|..+ .+.....|+.|..+.++
T Consensus 223 ---------------G-e~~~i~~ld~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 223 ---------------G-ETGIIAHLDKPLYLLGYLPKEN-RLYLIDRDGNVISYELD 262 (443)
T ss_dssp ---------------T-EEEEEEE-SS--EEEEEETTTT-EEEEE-TT--EEEEE--
T ss_pred ---------------C-CcceEEEcCCceEEEEEEccCC-EEEEEECCCCEEEEEEC
Confidence 1 1122222234566677777655 66777788888877653
No 325
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.51 E-value=0.0004 Score=61.11 Aligned_cols=201 Identities=13% Similarity=0.144 Sum_probs=112.7
Q ss_pred ceEEeeecCCCCceEEEEeecCCc-ceEEEEecCcccCCCCCccceeeee-eeccCCceEEEEeecCCCCcEEEEec---
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGES-YGAAIWQIPELYGQLNSPQLERIAA-LDAHVGKINCVLWWSSGRHDKLVSID--- 141 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~--- 141 (346)
.+...+++|++++++.+...+|+| ..+++.|++ +++.+.. +... ....+.|.++++.++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~---------tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE---------TGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETT---------TTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECC---------CCcCcCCccccc--ccceEEEeCCCCEEEEEEeCccc
Confidence 344678899999998876555544 679999998 4544432 2221 12239999999975666522
Q ss_pred -------CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---C-CeEEEEEccCC----Ccccee
Q 019059 142 -------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---E-SSVQFWDLRSM----GKTNSI 206 (346)
Q Consensus 142 -------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-~~i~i~d~~~~----~~~~~~ 206 (346)
...|+.|++.+......+........ .....+..++++++++.... + ..+++.|+..+ .....+
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~-~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP-FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCC-cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 23478888876654433433332221 12567889999999876553 3 46888888875 223333
Q ss_pred eccc---eeEEEeCCCCCcEEEEec---CCCeEEEEEcccCCc--ceeeecCCCcc--eEEEEeCCCCCcEEEEecCCC-
Q 019059 207 EHAH---VRNVDYDTKKKHLLVTAA---DESGIHLWDLRMLKA--PIQELPGHTHW--TWAVCCNPEYDGFILSAGTDS- 275 (346)
Q Consensus 207 ~~~~---v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~--v~~v~~~~~~~~~l~s~~~d~- 275 (346)
.... ...+... .+. +++... ..+.|...++..... ....+..+... +..+.. .+..+++....++
T Consensus 273 ~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~ 348 (414)
T PF02897_consen 273 SPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGS 348 (414)
T ss_dssp EESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTE
T ss_pred eCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCc
Confidence 3222 3334333 443 444332 235677777776442 12245455553 445444 3425566666565
Q ss_pred -eEEEEecC
Q 019059 276 -TVNLWLVS 283 (346)
Q Consensus 276 -~i~iwd~~ 283 (346)
.|+++++.
T Consensus 349 ~~l~v~~~~ 357 (414)
T PF02897_consen 349 SRLRVYDLD 357 (414)
T ss_dssp EEEEEEETT
T ss_pred cEEEEEECC
Confidence 68888888
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.6e-06 Score=69.99 Aligned_cols=218 Identities=13% Similarity=0.056 Sum_probs=140.0
Q ss_pred ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-CCeEEEEE
Q 019059 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-ESSVQFWD 196 (346)
Q Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d 196 (346)
-|.+.|+.+.-.- .+ +++.++.||.++.|.-..- ...........|...+.+++.+-++..+.+.+. |..++++|
T Consensus 7 mhrd~i~hv~~tk-a~-fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AK-FIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeeeh-hh-eEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 3666676655432 23 4777788999999986521 112223334456678888888888888888777 99999999
Q ss_pred ccCCCccceeeccc---eeEEEeCCCCCc-EEE-EecCCCeEEEEEcccCCcce-eeecCCCcceEEEEeCCCCCcEEEE
Q 019059 197 LRSMGKTNSIEHAH---VRNVDYDTKKKH-LLV-TAADESGIHLWDLRMLKAPI-QELPGHTHWTWAVCCNPEYDGFILS 270 (346)
Q Consensus 197 ~~~~~~~~~~~~~~---v~~~~~~~~~~~-~l~-~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~l~s 270 (346)
+.+-..+.-+.... ..+...+|.... +++ ..-.++.+.++|-+....+. ..-.-|..+|.++.+.+-+ ..+.+
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vS 161 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVS 161 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceee
Confidence 98766554444333 222333343221 233 33467899999988644333 3344699999999999999 88899
Q ss_pred ecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
....|.|.-|..... - ........... ....-+..+........++.|+|++. .+.+-+.|..|+++.+.
T Consensus 162 iD~~gmVEyWs~e~~-~-qfPr~~l~~~~--K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGP-F-QFPRTNLNFEL--KHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFK 231 (558)
T ss_pred ccccceeEeecCCCc-c-cCccccccccc--cccchhhcccccccCccceEEccccC-cccccCcccEEEEEEec
Confidence 888999999987730 0 00000000000 00111222333445678999999997 88999999999999764
No 327
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=8.6e-06 Score=66.89 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=96.3
Q ss_pred cceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcE-EEEe
Q 019059 109 QLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA-VAAT 187 (346)
Q Consensus 109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~ 187 (346)
+.+....+..+...|..++|+|....++..++.+..|+|.|+++.......... ..+.+++|.-+..+. ++|-
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~------~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY------NQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc------CCceeeeeccCCcceeEEec
Confidence 455566677788899999999999987777788999999999987655544432 389999999887665 4555
Q ss_pred cCCeEEEEEccCCCccceeeccc-----eeEEEe------CCCCCcEEEEecCCCeEEEEEcccCCc-ceeeec-CCCcc
Q 019059 188 CESSVQFWDLRSMGKTNSIEHAH-----VRNVDY------DTKKKHLLVTAADESGIHLWDLRMLKA-PIQELP-GHTHW 254 (346)
Q Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~-----v~~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~-~~~~~ 254 (346)
..|.|.+||++..+-......+. |..++. .+.+. +++.... .+..|.+..... +...+. +..+.
T Consensus 256 ~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 256 QNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred cCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcc
Confidence 79999999999765322111111 333322 23343 4444443 345565442111 111111 23455
Q ss_pred eEEEEeCCCCCcEEEEecC
Q 019059 255 TWAVCCNPEYDGFILSAGT 273 (346)
Q Consensus 255 v~~v~~~~~~~~~l~s~~~ 273 (346)
..++..++.....|++.-.
T Consensus 333 cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 333 CISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred eeeeeecCccceEEEEecC
Confidence 5566666655455555443
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=2.1e-05 Score=69.71 Aligned_cols=172 Identities=11% Similarity=-0.028 Sum_probs=106.3
Q ss_pred cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe--c-CCeEEEEEcCCCCCCceeeecccCC
Q 019059 90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI--D-EENIFLWSLDCSNKNAQVQSKQSSG 166 (346)
Q Consensus 90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~-d~~i~vwd~~~~~~~~~~~~~~~~~ 166 (346)
.+.+.+.|.+ +.+...++..- .....++++++|+++++++. + ...+..-+..+.. ..... ...
T Consensus 214 ~~~vSvID~e---------tmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvf-ni~- 279 (635)
T PRK02888 214 RSLFTAVDAE---------TMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVF-NIA- 279 (635)
T ss_pred eEEEEEEECc---------cceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEE-chH-
Confidence 3455666655 44444444332 24466788899986444431 2 2233333322111 00000 000
Q ss_pred CceeeEEEEeCCCCCcEEEEecCCeEEEEEccC-----CCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059 167 MLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS-----MGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (346)
Q Consensus 167 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (346)
.+ -++.++|++... .++.|.+.|.++ .+....+..+. +..++++|||+++++++..+.+|.+.|+.+
T Consensus 280 ---~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 280 ---RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred ---HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 00 134456776665 367899999998 45556666666 999999999998888888899999999987
Q ss_pred CCc-----------ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 241 LKA-----------PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 241 ~~~-----------~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
... .+.+..- .......+|.++| ....|.-.|.+|..||+..
T Consensus 353 ~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 442 1222222 2334567899999 8888888899999999876
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=2.5e-05 Score=69.79 Aligned_cols=174 Identities=11% Similarity=0.121 Sum_probs=112.9
Q ss_pred cceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCC
Q 019059 28 HTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNS 107 (346)
Q Consensus 28 ~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~ 107 (346)
...|+.|+ +.+.+++...+... ...+.|... .-+|.+++++ +.||+|.|-.+.
T Consensus 49 ~~~~~~Gt----H~g~v~~~~~~~~~-----~~~~~~s~~------~~~Gey~asC----S~DGkv~I~sl~-------- 101 (846)
T KOG2066|consen 49 DKFFALGT----HRGAVYLTTCQGNP-----KTNFDHSSS------ILEGEYVASC----SDDGKVVIGSLF-------- 101 (846)
T ss_pred cceeeecc----ccceEEEEecCCcc-----ccccccccc------ccCCceEEEe----cCCCcEEEeecc--------
Confidence 34555564 56677777666532 222334433 4568888875 799999999887
Q ss_pred ccceeeeeeeccCCceEEEEeecC----CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcE
Q 019059 108 PQLERIAALDAHVGKINCVLWWSS----GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNA 183 (346)
Q Consensus 108 ~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 183 (346)
+.+...++ ....++.+++++|+ ....++++|..| +.++.-+--+.......... .++|.++.|. |.++
T Consensus 102 -~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~---eG~I~~i~W~--g~lI 173 (846)
T KOG2066|consen 102 -TDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG---EGPIHSIKWR--GNLI 173 (846)
T ss_pred -CCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC---ccceEEEEec--CcEE
Confidence 44554555 34568999999998 222377777767 77776443222222322222 3489999996 5555
Q ss_pred EEEecCCeEEEEEccCCCccceeeccc--------eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059 184 VAATCESSVQFWDLRSMGKTNSIEHAH--------VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (346)
Q Consensus 184 ~~~~~d~~i~i~d~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (346)
+-+. |-.|++||+.+++.+..++.++ ...+.|.++.. ++.|=. .+|++..++.
T Consensus 174 AWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 174 AWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWG-DSVKICSIKK 234 (846)
T ss_pred EEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEecC-CeEEEEEEec
Confidence 5554 5559999999988777666444 66788988775 555544 4889998883
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.41 E-value=0.00026 Score=56.58 Aligned_cols=200 Identities=10% Similarity=0.082 Sum_probs=109.7
Q ss_pred eeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEE
Q 019059 115 ALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF 194 (346)
Q Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 194 (346)
.+.+-...+..++|+|+...++++....+.|..++.+ ++...++.... .....++++..++.++++.-.++.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g----~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG----FGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC----CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 3445556799999999988666666667888877764 33333322211 236788888877766665556899999
Q ss_pred EEccCCCcc------ceee--cc--c---eeEEEeCCCCCcEEEEecCCCeEEEEEccc--CCcceee--------ecCC
Q 019059 195 WDLRSMGKT------NSIE--HA--H---VRNVDYDTKKKHLLVTAADESGIHLWDLRM--LKAPIQE--------LPGH 251 (346)
Q Consensus 195 ~d~~~~~~~------~~~~--~~--~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~--------~~~~ 251 (346)
+++...... ..+. .. + +..++|+|.+. .|+.+-+..-..+|.++. ....+.. ....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 988543211 1121 11 1 88999999887 455555555566776653 1111111 1123
Q ss_pred CcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccc--c--c-----cceeeEEEe
Q 019059 252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYS--D--Y-----EDSVYGLAW 322 (346)
Q Consensus 252 ~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~-----~~~v~~~~~ 322 (346)
...+.++.++|....+++....+..|..+|.. ++++..+. . | -...-.|+|
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--------------------G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--------------------GRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT----------------------EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCC--------------------CCEEEEEEeCCcccCcccccCCccEEEE
Confidence 35678899999876777778888899999955 34433222 1 1 123678999
Q ss_pred CCCCCcEEEEeecCCeEEEe
Q 019059 323 SSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 323 ~~~~~~~l~s~~~d~~v~vw 342 (346)
.++|. +. ..++-+..++|
T Consensus 230 d~~G~-LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 230 DPDGN-LY-IVSEPNLFYRF 247 (248)
T ss_dssp -TT---EE-EEETTTEEEEE
T ss_pred CCCCC-EE-EEcCCceEEEe
Confidence 99986 44 45566666655
No 331
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=6.1e-07 Score=80.63 Aligned_cols=193 Identities=13% Similarity=0.211 Sum_probs=131.8
Q ss_pred ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC
Q 019059 110 LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE 189 (346)
Q Consensus 110 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 189 (346)
.+..++++.|+...+|++|+-+.++ +++|+..|.|+++++.++.....+ ..|...++.+.-+.+|..+++.+.-
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred cccchhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceeeeeccc
Confidence 4555667788899999999998885 777777999999999987644333 4577799999989899988877643
Q ss_pred --CeEEEEEccC-CCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee-ecC---CCcceEEEEeCC
Q 019059 190 --SSVQFWDLRS-MGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE-LPG---HTHWTWAVCCNP 262 (346)
Q Consensus 190 --~~i~i~d~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~---~~~~v~~v~~~~ 262 (346)
-...+|++.. +.+.+++.. -.++.|+..-. .-+.|..-....+||+.+.. ++.+ +.+ ....-++..|+|
T Consensus 1165 S~PlsaLW~~~s~~~~~Hsf~e--d~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~-~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSFDE--DKAVKFSNSLQ-FRALGTEADDALLYDVQTCS-PLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred cCchHHHhccccccCccccccc--cceeehhhhHH-HHHhcccccceEEEecccCc-HHHHhcCcchhhhhhccccccCC
Confidence 2567899874 344455443 56778876654 33344444678999999844 5544 322 223336788999
Q ss_pred CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059 263 EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 263 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw 342 (346)
+. .++. .||. +||++. .+.++.|...... -.=.|+|+|. -++.-++ ||
T Consensus 1241 ~D-~LIl---ndGv--LWDvR~-------------------~~aIh~FD~ft~~-~~G~FHP~g~-eVIINSE-----Iw 1288 (1516)
T KOG1832|consen 1241 CD-TLIL---NDGV--LWDVRI-------------------PEAIHRFDQFTDY-GGGGFHPSGN-EVIINSE-----IW 1288 (1516)
T ss_pred Cc-ceEe---eCce--eeeecc-------------------HHHHhhhhhheec-ccccccCCCc-eEEeech-----hh
Confidence 98 7665 3553 799998 6677766654422 2235889886 4555443 66
Q ss_pred ee
Q 019059 343 ML 344 (346)
Q Consensus 343 ~~ 344 (346)
|+
T Consensus 1289 D~ 1290 (1516)
T KOG1832|consen 1289 DM 1290 (1516)
T ss_pred hh
Confidence 64
No 332
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.38 E-value=0.00023 Score=57.33 Aligned_cols=182 Identities=9% Similarity=0.048 Sum_probs=106.6
Q ss_pred CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC
Q 019059 76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK 155 (346)
Q Consensus 76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 155 (346)
+++.++++ +.++.+..||.. +++.+-.... ...+.......++. +++...++.++.+|..+++.
T Consensus 35 ~~~~v~~~----~~~~~l~~~d~~---------tG~~~W~~~~-~~~~~~~~~~~~~~--v~v~~~~~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 35 DGGRVYVA----SGDGNLYALDAK---------TGKVLWRFDL-PGPISGAPVVDGGR--VYVGTSDGSLYALDAKTGKV 98 (238)
T ss_dssp ETTEEEEE----ETTSEEEEEETT---------TSEEEEEEEC-SSCGGSGEEEETTE--EEEEETTSEEEEEETTTSCE
T ss_pred eCCEEEEE----cCCCEEEEEECC---------CCCEEEEeec-cccccceeeecccc--cccccceeeeEecccCCcce
Confidence 46666664 478899999987 5666655543 22222222333343 55555678999999988887
Q ss_pred Ccee-eecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc------e-------eEEEeCCCCC
Q 019059 156 NAQV-QSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH------V-------RNVDYDTKKK 221 (346)
Q Consensus 156 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------v-------~~~~~~~~~~ 221 (346)
..+. ................+ .+..++++..++.|..+|+++|+.+....... + ..+.+. ++
T Consensus 99 ~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 174 (238)
T PF13360_consen 99 LWSIYLTSSPPAGVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG- 174 (238)
T ss_dssp EEEEEE-SSCTCSTB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-
T ss_pred eeeeccccccccccccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-
Confidence 6663 22211111111122222 36778888889999999999998765554211 1 233333 34
Q ss_pred cEEEEecCCCe-EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 222 HLLVTAADESG-IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 222 ~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.++.+..++. +.+ |+++.. .+-... ...+..+ ..+.+ ..|+.++.++.|..||+++
T Consensus 175 -~v~~~~~~g~~~~~-d~~tg~-~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 175 -RVYVSSGDGRVVAV-DLATGE-KLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -EEEEECCTSSEEEE-ETTTTE-EEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTT
T ss_pred -EEEEEcCCCeEEEE-ECCCCC-EEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCC
Confidence 4555555664 555 988743 232222 2233332 33555 6677777899999999998
No 333
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.36 E-value=0.00047 Score=60.17 Aligned_cols=180 Identities=12% Similarity=0.010 Sum_probs=102.4
Q ss_pred EEEEecCCeEEEEEcCCCCCCceeeecccCCCc--eeeEEEEeCC--CCCcEEEEecCCeEEEEEccCCCccceeeccce
Q 019059 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML--HYLSGGAWDP--HDVNAVAATCESSVQFWDLRSMGKTNSIEHAHV 211 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v 211 (346)
++.+..++.+..+|..+++...+.......+.. .....+.-+| .+..+++++.++.+..+|+.+++.+-....+..
T Consensus 208 v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~ 287 (394)
T PRK11138 208 AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV 287 (394)
T ss_pred EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc
Confidence 555666889999998887765543321110000 0011111112 245677788899999999999986544332222
Q ss_pred eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059 212 RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL 290 (346)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 290 (346)
..+.. .+. .++.++.+|.+..+|..+.. .+-....-. ....+... .+ ..|+.++.||.|.+.|..+
T Consensus 288 ~~~~~--~~~-~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~sp~v--~~-g~l~v~~~~G~l~~ld~~t------ 354 (394)
T PRK11138 288 NDFAV--DGG-RIYLVDQNDRVYALDTRGGV-ELWSQSDLLHRLLTAPVL--YN-GYLVVGDSEGYLHWINRED------ 354 (394)
T ss_pred cCcEE--ECC-EEEEEcCCCeEEEEECCCCc-EEEcccccCCCcccCCEE--EC-CEEEEEeCCCEEEEEECCC------
Confidence 22222 233 56667788999999988633 322211101 11122222 13 5678889999999999988
Q ss_pred CcccccCCccccccccccccccccceee-EEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 291 PSESLVESPNQRANSLLNSYSDYEDSVY-GLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
++.+....-....+. ...+. ++ .|..++.||.|+.+++
T Consensus 355 -------------G~~~~~~~~~~~~~~s~P~~~-~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 355 -------------GRFVAQQKVDSSGFLSEPVVA-DD--KLLIQARDGTVYAITR 393 (394)
T ss_pred -------------CCEEEEEEcCCCcceeCCEEE-CC--EEEEEeCCceEEEEeC
Confidence 666655433222222 12222 33 5777888999988764
No 334
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=0.00061 Score=56.45 Aligned_cols=227 Identities=11% Similarity=0.041 Sum_probs=128.9
Q ss_pred EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE
Q 019059 70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS 149 (346)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd 149 (346)
+..|.++...|+-+ .-..+.|.-|+.. .+ ....+. +.+.+.++.....+.. ++++ +..+.+++
T Consensus 29 gP~w~~~~~~L~w~---DI~~~~i~r~~~~---------~g-~~~~~~-~p~~~~~~~~~d~~g~-Lv~~--~~g~~~~~ 91 (307)
T COG3386 29 GPVWDPDRGALLWV---DILGGRIHRLDPE---------TG-KKRVFP-SPGGFSSGALIDAGGR-LIAC--EHGVRLLD 91 (307)
T ss_pred CccCcCCCCEEEEE---eCCCCeEEEecCC---------cC-ceEEEE-CCCCcccceeecCCCe-EEEE--ccccEEEe
Confidence 34677777766665 3456677777765 22 223332 2333445444444441 4444 34566677
Q ss_pred cCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----------CCeEEEEEccCCCccceeeccc---eeEEE
Q 019059 150 LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----------ESSVQFWDLRSMGKTNSIEHAH---VRNVD 215 (346)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~---v~~~~ 215 (346)
.+++.....+............+.+...|+|...+.... -|.|+.+|. .+...+.+. .+ .+.|+
T Consensus 92 ~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla 169 (307)
T COG3386 92 PDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLA 169 (307)
T ss_pred ccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceE
Confidence 654443222222222223346788899999887665544 134555554 344444333 43 88999
Q ss_pred eCCCCCcEEEEecCCCeEEEEEcccCC-----c-ceeeecCCCcceEEEEeCCCCCcEEEEecCCC-eEEEEecCCCCCC
Q 019059 216 YDTKKKHLLVTAADESGIHLWDLRMLK-----A-PIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-TVNLWLVSTSNHD 288 (346)
Q Consensus 216 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~-~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~ 288 (346)
|+|+++.++++=+..+.|+-|++.... + ....+....+..-.++...+| .+.+++..+| .|.+|+..
T Consensus 170 ~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pd----- 243 (307)
T COG3386 170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPD----- 243 (307)
T ss_pred ECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCC-----
Confidence 999998566666666888888776211 1 111122233455566777777 5554444443 88888887
Q ss_pred CCCcccccCCccccccccccccccccceeeEEEeC-CCCCcEEEEeecC
Q 019059 289 ELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWS-SREPWIFASLSYD 336 (346)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d 336 (346)
++++..+.-....+++++|- |+.+.++++....
T Consensus 244 ---------------G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 244 ---------------GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ---------------CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 46666665554667888885 3445566666554
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=0.00013 Score=68.39 Aligned_cols=198 Identities=14% Similarity=0.166 Sum_probs=124.6
Q ss_pred CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc--
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL-- 197 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-- 197 (346)
+..|.++.|..+... ++.+..+|.|.+-|..+.. ...... ....|.+++|+||.+.++..+..+++.+-+-
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~--~eivg~----vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLE--LEIVGN----VDNGISAASWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccc--eeeeee----ccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence 468999999998886 4444558888888877543 222221 2337999999999999999888777766332
Q ss_pred --cCCCcc-------------------ceee------------------c-----cceeEEEeCCCCCcEEEE-----ec
Q 019059 198 --RSMGKT-------------------NSIE------------------H-----AHVRNVDYDTKKKHLLVT-----AA 228 (346)
Q Consensus 198 --~~~~~~-------------------~~~~------------------~-----~~v~~~~~~~~~~~~l~~-----~~ 228 (346)
-..+++ ..+. . .|-.+|.|--||. ++++ ..
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESET 219 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEeccC
Confidence 111110 1111 0 0033589999998 6666 22
Q ss_pred CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec---CCCeEEEEecCCCCCCCCCcccccCCccccccc
Q 019059 229 DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRANS 305 (346)
Q Consensus 229 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (346)
....|++||-. +..-..-....+.-.+++|-|.| .++++-. .|+.|.+|..+.... ++
T Consensus 220 ~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h----------------g~ 280 (1265)
T KOG1920|consen 220 GTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH----------------GE 280 (1265)
T ss_pred CceeEEEeccc--chhhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc----------------cc
Confidence 23789999966 21111111223344678999999 8888753 356799998764110 22
Q ss_pred cccccccccceeeEEEeCCCCCcEEEE---eecCCeEEEeeec
Q 019059 306 LLNSYSDYEDSVYGLAWSSREPWIFAS---LSYDGRVRNHMLE 345 (346)
Q Consensus 306 ~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~d~~v~vw~~~ 345 (346)
....+......|..++|+.++. +||. ......|++|-+.
T Consensus 281 f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred cccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEec
Confidence 2223333444589999999987 7777 5555569999753
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.0012 Score=57.16 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=144.7
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEE
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIF 146 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~ 146 (346)
....+...|++..+..+. ...+ .+..-+.. ..........-...-..++.++.+...++....++.|.
T Consensus 32 ~~~~v~~~~~g~~~~v~~--~~~~-~~~~~~~~---------~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~ 99 (381)
T COG3391 32 GPGGVAVNPDGTQVYVAN--SGSN-DVSVIDAT---------SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVS 99 (381)
T ss_pred CCceeEEcCccCEEEEEe--ecCc-eeeecccc---------cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEE
Confidence 455677888886666653 1222 33333322 11111111111133457788899987666666679999
Q ss_pred EEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEEEccCCCccceeeccc-eeEEEeCCCCCc
Q 019059 147 LWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH 222 (346)
Q Consensus 147 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~ 222 (346)
+.|..+........... ....++++|+++.+.++.. ++.+.+.|..+.+.......+. ...++++|++..
T Consensus 100 vid~~~~~~~~~~~vG~------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~ 173 (381)
T COG3391 100 VIDTATNTVLGSIPVGL------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNK 173 (381)
T ss_pred EEcCcccceeeEeeecc------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCe
Confidence 99976554333333222 5678899999988887765 6899999999988887766554 789999999996
Q ss_pred EEEEecCCCeEEEEEcccCCccee-e---ecCCCcceEEEEeCCCCCcEEEEec-CC--CeEEEEecCCCCCCCCCcccc
Q 019059 223 LLVTAADESGIHLWDLRMLKAPIQ-E---LPGHTHWTWAVCCNPEYDGFILSAG-TD--STVNLWLVSTSNHDELPSESL 295 (346)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~~~~~~~-~---~~~~~~~v~~v~~~~~~~~~l~s~~-~d--~~i~iwd~~~~~~~~~~~~~~ 295 (346)
++++-..++.|.+.|... ....+ . ...-......+.++|++ ..+.... .+ +.+...|...
T Consensus 174 vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~P~~i~v~~~g-~~~yV~~~~~~~~~v~~id~~~----------- 240 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTGPAGIAVDPDG-NRVYVANDGSGSNNVLKIDTAT----------- 240 (381)
T ss_pred EEEEecCCCeEEEEeCCC-cceeccccccccccCCCCceEEECCCC-CEEEEEeccCCCceEEEEeCCC-----------
Confidence 666666889999999764 22221 0 11122344678899999 5444433 33 5888888887
Q ss_pred cCCccccccccccc-cccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 296 VESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 296 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
...... ...-......+..+|+|....+.-+..+.+.+-|
T Consensus 241 --------~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 241 --------GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred --------ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 333332 1111103456778888874444434445555544
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.29 E-value=0.0016 Score=54.75 Aligned_cols=284 Identities=14% Similarity=0.216 Sum_probs=130.6
Q ss_pred CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccc-cceEEeeecCCCCceEEEEeecCCcceEEEEecCccc
Q 019059 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHP-NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELY 102 (346)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~ 102 (346)
+..++.+|+.++. .....+++++++... ...++...+ .......++|+++.++... ....|.--|++
T Consensus 43 ft~dG~kllF~s~-~dg~~nly~lDL~t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~----~~~~l~~vdL~--- 110 (386)
T PF14583_consen 43 FTDDGRKLLFASD-FDGNRNLYLLDLATG----EITQLTDGPGDNTFGGFLSPDDRALYYVK----NGRSLRRVDLD--- 110 (386)
T ss_dssp B-TTS-EEEEEE--TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TTSSEEEEEE----TTTEEEEEETT---
T ss_pred cCCCCCEEEEEec-cCCCcceEEEEcccC----EEEECccCCCCCccceEEecCCCeEEEEE----CCCeEEEEECC---
Confidence 5667878887654 234567778877764 234444443 2344567788888877652 44577777887
Q ss_pred CCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec----C-------------------CeEEEEEcCCCCCCcee
Q 019059 103 GQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID----E-------------------ENIFLWSLDCSNKNAQV 159 (346)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----d-------------------~~i~vwd~~~~~~~~~~ 159 (346)
+.+....+......+-...|..+...-.+++.. | ..|..-|+.+++.....
T Consensus 111 ------T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~ 184 (386)
T PF14583_consen 111 ------TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF 184 (386)
T ss_dssp ------T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE
T ss_pred ------cCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE
Confidence 444444455555666556665332222444421 1 22444555554422222
Q ss_pred eecccCCCceeeEEEEeCCCCCcEEEEecCC-----eEEEEEccCC-Cccceee---ccc-eeEEEeCCCCCcEEEEec-
Q 019059 160 QSKQSSGMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSM-GKTNSIE---HAH-VRNVDYDTKKKHLLVTAA- 228 (346)
Q Consensus 160 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~-~~~~~~~---~~~-v~~~~~~~~~~~~l~~~~- 228 (346)
.. ...+..+.|+|....+++-|..| .-|+|-+++. .....+. ... +..=-|.|+|..+...+.
T Consensus 185 ~~------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 185 ED------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp EE------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred ec------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence 21 12567889999888888877532 1356665532 2222222 122 777789999985544332
Q ss_pred ---CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC----------------eEEEEecCCCCCCC
Q 019059 229 ---DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS----------------TVNLWLVSTSNHDE 289 (346)
Q Consensus 229 ---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~----------------~i~iwd~~~~~~~~ 289 (346)
.+..|.-+|+.+... ..+. ...+...+..+++| .+++-=+.|. .|+++++.......
T Consensus 259 ~~~~~~~i~~~d~~t~~~--~~~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~ 334 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTGER--RRLM-EMPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK 334 (386)
T ss_dssp TTT--EEEEEE-TTT--E--EEEE-EE-SEEEEEE-TTS-SEEEEEE-------------------EEEEEETTTTEEEE
T ss_pred CCCCceEEEeeCCCCCCc--eEEE-eCCceeeeEEcCCC-CEEEecCCCCCccccccccceecCCcEEEEeccccCceee
Confidence 344566777776332 2221 11234455667888 7766544332 34555655410000
Q ss_pred CCcccccCCccccccccccccccccc-eeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 290 LPSESLVESPNQRANSLLNSYSDYED-SVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.. . -......+.++.. .=-...|+||++++|.+...+|...||-++
T Consensus 335 l~----~------h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 335 LA----R------HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EE----E-------------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ee----e------ccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 00 0 0000011111111 013478999999999999999988887653
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00016 Score=65.36 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=77.8
Q ss_pred ccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcc
Q 019059 22 VKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPEL 101 (346)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~ 101 (346)
.++.|...-|++.+++....|.+.++--..+. ..-...+-.+.+++|+|..-.|+.. =.-|.+.+|...
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEP-----qr~Vt~P~hatSLCWHpe~~vLa~g----we~g~~~v~~~~-- 89 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEP-----QRDVTYPVHATSLCWHPEEFVLAQG----WEMGVSDVQKTN-- 89 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCC-----CcccccceehhhhccChHHHHHhhc----cccceeEEEecC--
Confidence 44788888999999887777888776433321 1111233456779999965555443 466789999976
Q ss_pred cCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcC
Q 019059 102 YGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLD 151 (346)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~ 151 (346)
..+.-.....|..+|..+.||++|.. ++++-.-|.|.+|..+
T Consensus 90 -------~~e~htv~~th~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 -------TTETHTVVETHPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -------CceeeeeccCCCCCceeEEecCCCCe-EEEcCCCceeEEEEee
Confidence 33333334578999999999999994 6666556899999876
No 339
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.26 E-value=0.0011 Score=57.86 Aligned_cols=168 Identities=10% Similarity=0.030 Sum_probs=91.7
Q ss_pred eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceee
Q 019059 92 GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYL 171 (346)
Q Consensus 92 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 171 (346)
.|++|+.. ++++.++.-..+.|.++.|+.+.. +++-..||.++++|+.... .+..... .....|
T Consensus 62 ~I~iys~s----------G~ll~~i~w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G~~---~fsl~~~-i~~~~v 125 (410)
T PF04841_consen 62 SIQIYSSS----------GKLLSSIPWDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLFGEF---QFSLGEE-IEEEKV 125 (410)
T ss_pred EEEEECCC----------CCEeEEEEECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCCCce---eechhhh-ccccCc
Confidence 58899875 566666655558999999998766 5555579999999986332 1111110 001122
Q ss_pred -----EEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceee-------ccc----eeE-EEeCCCCCcEEEEecCCCeE
Q 019059 172 -----SGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIE-------HAH----VRN-VDYDTKKKHLLVTAADESGI 233 (346)
Q Consensus 172 -----~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~-------~~~----v~~-~~~~~~~~~~l~~~~~dg~i 233 (346)
....+..+| ++.-..++.+.+..--... ..+.+. ..+ ... ..++.+.. ..+....++.+
T Consensus 126 ~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i 202 (410)
T PF04841_consen 126 LECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETI 202 (410)
T ss_pred ccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEE
Confidence 222222233 3433445555444322211 111110 001 111 23344444 34444445566
Q ss_pred EEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 234 HLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 234 ~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.+.+-... ..+. ..+++..++.||++ +++|.-..+|.+.+.+...
T Consensus 203 ~~i~~~~~----~~i~-~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 203 YIIDENSF----KQID-SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred EEEEcccc----cccc-CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcc
Confidence 64543321 1122 24689999999999 9999999999998887654
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.20 E-value=7.1e-05 Score=66.54 Aligned_cols=198 Identities=12% Similarity=-0.025 Sum_probs=114.0
Q ss_pred EeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec----CCeEEEEEccCCCc
Q 019059 127 LWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC----ESSVQFWDLRSMGK 202 (346)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~ 202 (346)
=+.|||+.+...+-..+.+.+.|.++.+...++.... ....++++|+++++++++. ..++...+......
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~ 272 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW 272 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC------CcccceECCCCCEEEEeccCcccCcceeeeccccCce
Confidence 3456676433333345777777877544333333322 4456789999999988863 23444444433222
Q ss_pred cceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEccc----CCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEE
Q 019059 203 TNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRM----LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVN 278 (346)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~ 278 (346)
...+....+ -++.++|++.++ .++.|.+.|.++ ....+..+ .-......+.++|||..+++++..+.+|.
T Consensus 273 ~vvfni~~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 273 VVVFNIARI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred EEEEchHHH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEE
Confidence 222211101 144567874343 356899999886 22233333 34566788999999944455566689999
Q ss_pred EEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 279 LWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
|.|+.+...-.... . +.....+.+..--. .....+|.++|. .+.|.-.|..|-.|+++
T Consensus 347 VIDv~k~k~~~~~~-----~--~~~~~vvaevevGl-GPLHTaFDg~G~-aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 347 VIDVRKLDDLFDGK-----I--KPRDAVVAEPELGL-GPLHTAFDGRGN-AYTTLFLDSQIVKWNIE 404 (635)
T ss_pred EEEChhhhhhhhcc-----C--CccceEEEeeccCC-CcceEEECCCCC-EEEeEeecceeEEEehH
Confidence 99998732100000 0 00011122222212 245678999986 88899999999999986
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00068 Score=61.55 Aligned_cols=215 Identities=11% Similarity=0.084 Sum_probs=122.0
Q ss_pred CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccc-eEEeeecCCCCceEEEEeecCCcc-eEEEEecCcc
Q 019059 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNE-IWDLSSCPFDQRIFSTVFSTGESY-GAAIWQIPEL 101 (346)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~~~~~~~~~d~-~i~vw~~~~~ 101 (346)
+++.+.++++|+. ++.|..+ +..- .....+..++.. |..+-.-.+...|++.+-+..... .++||+++..
T Consensus 31 ~~s~~~~vvigt~----~G~V~~L--n~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 31 CSSSTGSVVIGTA----DGRVVIL--NSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred EcCCCceEEEeec----cccEEEe--cccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4556777777753 3444333 3321 122455556655 444433333345666542222122 7999999854
Q ss_pred cCCCCCccceee--eeeec-----cCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC--CCCceeeecccCCCceeeE
Q 019059 102 YGQLNSPQLERI--AALDA-----HVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS--NKNAQVQSKQSSGMLHYLS 172 (346)
Q Consensus 102 ~~~~~~~~~~~~--~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~ 172 (346)
.+..+ .+++ ..+.. ...++.+++.+.+-+ .+++|-.+|.|..+.=+-. ........ .....+|+
T Consensus 103 ~~n~s---P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~---~~~~~pIT 175 (933)
T KOG2114|consen 103 DKNNS---PQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYS---HRGKEPIT 175 (933)
T ss_pred CCCCC---cceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeee---ccCCCCce
Confidence 32111 2232 12222 256788999998855 3666666899988864321 11111111 12244899
Q ss_pred EEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059 173 GGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (346)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (346)
++++..++..++.+..-..|.+|.+....+.......+ ++|..+++... -+++++. ..+.+||... ..+...+.
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~~-e~l~fY~sd~-~~~cfaf~ 252 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAGS-EFLYFYDSDG-RGPCFAFE 252 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEecC-ceEEEEcCCC-cceeeeec
Confidence 99999888884444455679999998554333322233 88999987665 4555544 4899999885 44666666
Q ss_pred -CCCcceE
Q 019059 250 -GHTHWTW 256 (346)
Q Consensus 250 -~~~~~v~ 256 (346)
+|.....
T Consensus 253 ~g~kk~~~ 260 (933)
T KOG2114|consen 253 VGEKKEML 260 (933)
T ss_pred CCCeEEEE
Confidence 6655443
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.17 E-value=4.1e-05 Score=70.42 Aligned_cols=134 Identities=10% Similarity=0.099 Sum_probs=93.5
Q ss_pred cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCC------cEEEEecCCCeEEEEEcccCCcceeeec----CCCcceE
Q 019059 188 CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKK------HLLVTAADESGIHLWDLRMLKAPIQELP----GHTHWTW 256 (346)
Q Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~ 256 (346)
....|+-.|+..|+.+..+.... +.-..+.|+.. .-.+.|-.+..+..||.|-.+..+..-. ......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 35789999999999998887544 43444444321 1345677788999999996443222111 2345678
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecC
Q 019059 257 AVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYD 336 (346)
Q Consensus 257 ~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 336 (346)
|++-+.+| +||+|+.+|.||+||.-. ......+.+-..+|..|+.+.||+|+||||-
T Consensus 582 ~~aTt~~G--~iavgs~~G~IRLyd~~g-------------------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-- 638 (794)
T PF08553_consen 582 CFATTEDG--YIAVGSNKGDIRLYDRLG-------------------KRAKTALPGLGDPIIGIDVTADGKWILATCK-- 638 (794)
T ss_pred EEEecCCc--eEEEEeCCCcEEeecccc-------------------hhhhhcCCCCCCCeeEEEecCCCcEEEEeec--
Confidence 88877776 899999999999999543 2334445666789999999999998777764
Q ss_pred CeEEEeee
Q 019059 337 GRVRNHML 344 (346)
Q Consensus 337 ~~v~vw~~ 344 (346)
..+.+++.
T Consensus 639 tyLlLi~t 646 (794)
T PF08553_consen 639 TYLLLIDT 646 (794)
T ss_pred ceEEEEEE
Confidence 55666553
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.09 E-value=0.00089 Score=58.50 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=80.9
Q ss_pred ccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059 118 AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (346)
Q Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (346)
...-....+.++|+|+. ++-+.+|...++..... .... ......++|.+.++ +++-.....|.++.-
T Consensus 30 ~~~~~p~~ls~npngr~--v~V~g~geY~iyt~~~~----r~k~------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRF--VLVCGDGEYEIYTALAW----RNKA------FGSGLSFVWSSRNR-YAVLESSSTIKIYKN 96 (443)
T ss_dssp E-SS--SEEEE-TTSSE--EEEEETTEEEEEETTTT----EEEE------EEE-SEEEE-TSSE-EEEE-TTS-EEEEET
T ss_pred CCCcCCeeEEECCCCCE--EEEEcCCEEEEEEccCC----cccc------cCceeEEEEecCcc-EEEEECCCeEEEEEc
Confidence 34445789999999994 33356899888883311 1111 12566788998444 666666888999743
Q ss_pred cCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059 198 RSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 198 ~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
-..+....+..+. +..|-. |. +|...+. +.|.+||..+ .+.+..+.. .+|..|.|++++ .+++..+.+ .
T Consensus 97 ~~~~~~k~i~~~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~-~~~i~~i~v--~~vk~V~Ws~~g-~~val~t~~-~ 166 (443)
T PF04053_consen 97 FKNEVVKSIKLPFSVEKIFG---GN-LLGVKSS-DFICFYDWET-GKLIRRIDV--SAVKYVIWSDDG-ELVALVTKD-S 166 (443)
T ss_dssp TEE-TT-----SS-EEEEE----SS-SEEEEET-TEEEEE-TTT---EEEEESS---E-EEEEE-TTS-SEEEEE-S--S
T ss_pred CccccceEEcCCcccceEEc---Cc-EEEEECC-CCEEEEEhhH-cceeeEEec--CCCcEEEEECCC-CEEEEEeCC-e
Confidence 3344434455443 555543 76 6666555 4899999997 557777763 348999999999 888888865 6
Q ss_pred EEEEecCC
Q 019059 277 VNLWLVST 284 (346)
Q Consensus 277 i~iwd~~~ 284 (346)
+.|++.+.
T Consensus 167 i~il~~~~ 174 (443)
T PF04053_consen 167 IYILKYNL 174 (443)
T ss_dssp EEEEEE-H
T ss_pred EEEEEecc
Confidence 88887665
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.06 E-value=0.003 Score=53.47 Aligned_cols=189 Identities=10% Similarity=0.091 Sum_probs=105.4
Q ss_pred cceEEEeecccCC-----C-CeEEEEEecCC---CCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059 28 HTSFLTGTLSLKE-----E-NEVHLLRLSSG---GTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (346)
Q Consensus 28 ~~~~~~g~~~~~~-----~-~~i~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (346)
...+++|+..... . |.++++++... ...+........+++|.+++-. +.+++++ ....|.+|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~-----~g~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVA-----VGNKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEE-----ETTEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEe-----ecCEEEEEEc
Confidence 6788888764431 2 88999999884 2344444445567899998877 3346665 3468999999
Q ss_pred CcccCCCCCcc-ceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeC
Q 019059 99 PELYGQLNSPQ-LERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWD 177 (346)
Q Consensus 99 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 177 (346)
.. .. ......+.. ...+.++... ++ .++++.....+.++..+............. ....++++.+-
T Consensus 115 ~~-------~~~l~~~~~~~~-~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~--~~~~v~~~~~l 181 (321)
T PF03178_consen 115 DN-------SKTLLKKAFYDS-PFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDY--QPRWVTAAEFL 181 (321)
T ss_dssp ET-------TSSEEEEEEE-B-SSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEES--S-BEEEEEEEE
T ss_pred cC-------cccchhhheecc-eEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecC--CCccEEEEEEe
Confidence 82 12 222222222 2245555544 44 366665567777776654222222222221 24478888888
Q ss_pred CCCCcEEEEecCCeEEEEEccCC-------C-ccc---eeeccc-eeEE---EeCC--CCCc-----EEEEecCCCeEEE
Q 019059 178 PHDVNAVAATCESSVQFWDLRSM-------G-KTN---SIEHAH-VRNV---DYDT--KKKH-----LLVTAADESGIHL 235 (346)
Q Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~-------~-~~~---~~~~~~-v~~~---~~~~--~~~~-----~l~~~~~dg~i~i 235 (346)
++++.++++..+|.+.++..... . .+. .+..+. |+++ .+.| .+.. .++.++.+|.|..
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred cCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 66678888888999999887631 1 111 222222 7777 6555 2221 3677778888874
Q ss_pred E
Q 019059 236 W 236 (346)
Q Consensus 236 ~ 236 (346)
.
T Consensus 262 l 262 (321)
T PF03178_consen 262 L 262 (321)
T ss_dssp E
T ss_pred E
Confidence 4
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0062 Score=52.75 Aligned_cols=196 Identities=17% Similarity=0.120 Sum_probs=125.2
Q ss_pred ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEe-cCCeEEEEEccCC
Q 019059 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAAT-CESSVQFWDLRSM 200 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~ 200 (346)
....+...+++..+.++......+...+.. .. ........+ ......++.++.+..+++.. .+..|.+.|..+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n---~~~~~~~~g-~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~ 106 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN---TVTQSLSVG-GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN 106 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cc---eeeeeccCC-CccccceeeCCCCCeEEEecCCCCeEEEEcCccc
Confidence 556778888887655555444445444443 11 111111001 02446778888888666655 4689999998888
Q ss_pred Cccceeeccc-eeEEEeCCCCCcEEEEec--CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059 201 GKTNSIEHAH-VRNVDYDTKKKHLLVTAA--DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTV 277 (346)
Q Consensus 201 ~~~~~~~~~~-v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i 277 (346)
+.......+. ...++++|++..+.++-. .++.+.+.|..+ .........-..+ ..++++|+|....++-..++.|
T Consensus 107 ~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 107 TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeE
Confidence 8888777676 999999999985666655 368899999886 3344444332334 8899999994355555578999
Q ss_pred EEEecCCCCCCCCCcccccCCcccccccccc-----ccccccceeeEEEeCCCCCcEEEEeecC--CeEEEeee
Q 019059 278 NLWLVSTSNHDELPSESLVESPNQRANSLLN-----SYSDYEDSVYGLAWSSREPWIFASLSYD--GRVRNHML 344 (346)
Q Consensus 278 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~v~vw~~ 344 (346)
.+.|.+. ..... ...... ....+.++|++.+..++...+ +.+...|.
T Consensus 185 ~vi~~~~-------------------~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 185 SVIDTSG-------------------NSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred EEEeCCC-------------------cceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence 9999776 22221 111122 246788999998555555544 46665554
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.99 E-value=0.0025 Score=54.94 Aligned_cols=242 Identities=10% Similarity=0.100 Sum_probs=114.9
Q ss_pred eeeccCCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEec
Q 019059 19 ISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQI 98 (346)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~ 98 (346)
|..+.+..+...|++|. ..|++.++++...+..- .. -...-..+.+.+-. .+++.-.+-|+
T Consensus 4 v~~vs~a~~t~Elav~~----~~GeVv~~k~~~n~~~~-~~----~~~~~~~~~~~~~~----------~~~~~~~l~di 64 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGL----ESGEVVLFKFGKNQNYG-NR----EQPPDLDYNFRRFS----------LNNSPGKLTDI 64 (395)
T ss_dssp EEEEEEETTTTEEEEEE----TTS-EEEEEEEE-----------------------S------------GGGSS-SEEE-
T ss_pred EEEEEecCCCceEEEEc----cCCcEEEEEcccCCCCC-cc----CCCcccCccccccc----------ccCCCcceEEe
Confidence 45566677888898885 45788888877642211 00 00111122222210 12222234444
Q ss_pred CcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecc---cCCCceeeEEEE
Q 019059 99 PELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQ---SSGMLHYLSGGA 175 (346)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~v~~~~ 175 (346)
..+..........+..-+....++|++++.|.-| +++++..+|.+.|.|++...-........ .......++++.
T Consensus 65 ~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie 142 (395)
T PF08596_consen 65 SDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE 142 (395)
T ss_dssp GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE
T ss_pred hhhCCcccccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEE
Confidence 4332222222356666666778999999998666 36677789999999998654332222111 111233566676
Q ss_pred eC-----CCC---CcEEEEecCCeEEEEEccC-CCccce--ee------ccceeEEE-eCCC-C----------------
Q 019059 176 WD-----PHD---VNAVAATCESSVQFWDLRS-MGKTNS--IE------HAHVRNVD-YDTK-K---------------- 220 (346)
Q Consensus 176 ~~-----~~~---~~l~~~~~d~~i~i~d~~~-~~~~~~--~~------~~~v~~~~-~~~~-~---------------- 220 (346)
|. .|+ ..+++|.+.|.+.+|.+.- ..-... +. .+.+..|. ++.+ +
T Consensus 143 F~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 143 FSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred EEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 64 222 3588888899999998752 111111 10 01122221 2111 0
Q ss_pred ---CcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeC-----CCCCcEEEEecCCCeEEEEecCC
Q 019059 221 ---KHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN-----PEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 221 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~-----~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+.+++ ...+..++++...+.+...+.+ ........+.+- ..+ ..|++-..+|.|++|.+..
T Consensus 223 ~~i~g~vV-vvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 223 ISIPGYVV-VVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp ----EEEE-EE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT
T ss_pred CCcCcEEE-EEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCC
Confidence 11333 3345789999988644333333 222233334442 244 7888889999999999986
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.99 E-value=0.0038 Score=51.66 Aligned_cols=198 Identities=14% Similarity=0.183 Sum_probs=111.2
Q ss_pred EeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE
Q 019059 70 DLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS 149 (346)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd 149 (346)
.++++.++++++..-. .-...|.|-|+. ..+.+..+.... |...-|.++.-+.+-|.||.+.-..
T Consensus 99 ~~~ls~dgk~~~V~N~--TPa~SVtVVDl~---------~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~ 163 (342)
T PF06433_consen 99 MFALSADGKFLYVQNF--TPATSVTVVDLA---------AKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVT 163 (342)
T ss_dssp GEEE-TTSSEEEEEEE--SSSEEEEEEETT---------TTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ceEEccCCcEEEEEcc--CCCCeEEEEECC---------CCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEE
Confidence 4567777777776532 233467788877 455555553221 2222344433366668899999999
Q ss_pred cCCCCCCceeeecccCCCceee-EEEEeCCCCCcEEEEecCCeEEEEEccCCCccc--eee------------ccceeEE
Q 019059 150 LDCSNKNAQVQSKQSSGMLHYL-SGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN--SIE------------HAHVRNV 214 (346)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~------------~~~v~~~ 214 (346)
++...+........+.....++ ..-++...+..++..+.+|.|+-.|+....... .+. ++--.-+
T Consensus 164 Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 164 LDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp ETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred ECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence 9854443322221111111122 222344445556667889999988887654221 111 0114557
Q ss_pred EeCCCCCcEEEEe--c-----CCC--eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe-cCCCeEEEEecCC
Q 019059 215 DYDTKKKHLLVTA--A-----DES--GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVST 284 (346)
Q Consensus 215 ~~~~~~~~~l~~~--~-----~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~-~~d~~i~iwd~~~ 284 (346)
++++....+++.- + .|+ .|.++|+.+ ++.+..+.. ..++.+|..+.+...+|++. ..++.+.+||..+
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 7776655233321 1 122 467778876 555666653 45688999998885677654 5589999999999
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=2.1e-05 Score=70.77 Aligned_cols=108 Identities=10% Similarity=0.145 Sum_probs=86.3
Q ss_pred EEEeCCCCCcEEEEe----cCCeEEEEEccCCCccceeecc-ceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee
Q 019059 173 GGAWDPHDVNAVAAT----CESSVQFWDLRSMGKTNSIEHA-HVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE 247 (346)
Q Consensus 173 ~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 247 (346)
-..|+|..+.+++++ ..|.|.|| ..+|++-+....+ |+++++|+|..- +|+.|-.-|.+.+|.... +..-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~-~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNT-TETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHH-HHhhccccceeEEEecCC-ceeeee
Confidence 347999999888776 36888887 4566665554433 389999999875 888888899999999875 434445
Q ss_pred ecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 248 LPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 248 ~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
...|+.+|..+.|||+| ..++++..-|.|.+|....
T Consensus 97 ~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence 56799999999999999 9999999999999997763
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.91 E-value=0.0076 Score=53.05 Aligned_cols=197 Identities=11% Similarity=0.069 Sum_probs=103.9
Q ss_pred eEEEEeecCCCCcEEEEecC----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---------
Q 019059 123 INCVLWWSSGRHDKLVSIDE----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE--------- 189 (346)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 189 (346)
+....++|++++++++-+.. ..++++|+.+++......... ....+.|.++++.++....+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------KFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------ESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------ccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 44678899999755554443 459999999874332222111 22349999998887776532
Q ss_pred --CeEEEEEccCCCcc--ceeeccc----eeEEEeCCCCCcEEEEecCC---CeEEEEEcccC---CcceeeecCCCcce
Q 019059 190 --SSVQFWDLRSMGKT--NSIEHAH----VRNVDYDTKKKHLLVTAADE---SGIHLWDLRML---KAPIQELPGHTHWT 255 (346)
Q Consensus 190 --~~i~i~d~~~~~~~--~~~~~~~----v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~---~~~~~~~~~~~~~v 255 (346)
..|+.|.+.+.... ..+.... ...+..+++++++++..... ..+.+.|+... ......+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 23777887766543 2222111 45788999999666554433 35778887753 22344444334344
Q ss_pred E-EEEeCCCCCcEEEEecC---CCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc--eeeEEEeCCCCCcE
Q 019059 256 W-AVCCNPEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED--SVYGLAWSSREPWI 329 (346)
Q Consensus 256 ~-~v~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~ 329 (346)
. .+... .+ .+++.... ++.|.-.++..... ......+..+.. .+..+... +.++
T Consensus 280 ~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~----------------~~~~~~l~~~~~~~~l~~~~~~--~~~L 339 (414)
T PF02897_consen 280 EYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSP----------------AEWWTVLIPEDEDVSLEDVSLF--KDYL 339 (414)
T ss_dssp EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSG----------------GGEEEEEE--SSSEEEEEEEEE--TTEE
T ss_pred EEEEEcc-CC-EEEEeeCCCCCCcEEEEeccccccc----------------ccceeEEcCCCCceeEEEEEEE--CCEE
Confidence 3 34333 33 34443322 35666667665100 001113333433 35555554 3457
Q ss_pred EEEeecCCe--EEEeeec
Q 019059 330 FASLSYDGR--VRNHMLE 345 (346)
Q Consensus 330 l~s~~~d~~--v~vw~~~ 345 (346)
++..-.++. |+++++.
T Consensus 340 vl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 340 VLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEETTEEEEEEEETT
T ss_pred EEEEEECCccEEEEEECC
Confidence 777766665 5555553
No 350
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=0.005 Score=49.34 Aligned_cols=164 Identities=13% Similarity=0.231 Sum_probs=106.4
Q ss_pred eeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeecc-CCceEEEEeecCCCCcEEEE
Q 019059 61 LFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAH-VGKINCVLWWSSGRHDKLVS 139 (346)
Q Consensus 61 ~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 139 (346)
+.+-...|.++.|+|+.+.|+++. +...-.||-.. +++.++++.-. -..--.+.|..+|+ ++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~----n~p~~iVElt~---------~GdlirtiPL~g~~DpE~Ieyig~n~--fvi~ 145 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVT----NKPAAIVELTK---------EGDLIRTIPLTGFSDPETIEYIGGNQ--FVIV 145 (316)
T ss_pred cccccccccceeeCCCcceEEEec----CCCceEEEEec---------CCceEEEecccccCChhHeEEecCCE--EEEE
Confidence 345556699999999999999983 33333344332 57777776422 22345778888777 4555
Q ss_pred -ecCCeEEEEEcCCCCCCceeee-----cccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce--------
Q 019059 140 -IDEENIFLWSLDCSNKNAQVQS-----KQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS-------- 205 (346)
Q Consensus 140 -~~d~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------- 205 (346)
-.++.+.++.++.+........ ...........+++|.|....++++-...-+.||..........
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence 5588898888875533222211 11112255789999999999999988777677766553331111
Q ss_pred ----eeccceeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059 206 ----IEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLR 239 (346)
Q Consensus 206 ----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 239 (346)
+....+.++.|++....+++-+.+++.+.-.|..
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 1101188899998777688888888888888876
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00016 Score=61.96 Aligned_cols=141 Identities=9% Similarity=0.067 Sum_probs=97.6
Q ss_pred CCcEEEE-ecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCc------EEEEecCCCeEEEEEcccCCc-ceeeecC
Q 019059 180 DVNAVAA-TCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH------LLVTAADESGIHLWDLRMLKA-PIQELPG 250 (346)
Q Consensus 180 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~-~~~~~~~ 250 (346)
.+.|+.. .....|+-.|++.|+.+....... |+-+.+.|+... --+.|-.+..|.-||+|-.+. .+...+.
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 3444433 345678889999999988887555 888888887642 123466788999999985443 2222223
Q ss_pred CC----cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC
Q 019059 251 HT----HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE 326 (346)
Q Consensus 251 ~~----~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 326 (346)
|. ....|.+-..+| ++++||.+|.||+||.-. ......+++-..+|..|..+.+|
T Consensus 425 kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~-------------------~~AKTAlPgLG~~I~hVdvtadG 483 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIG-------------------RRAKTALPGLGDAIKHVDVTADG 483 (644)
T ss_pred cccccccccceeeecCCc--eEEEeecCCcEEeehhhh-------------------hhhhhcccccCCceeeEEeeccC
Confidence 32 345566655555 899999999999999854 44455677788899999999999
Q ss_pred CcEEEEeecCCeEEEee
Q 019059 327 PWIFASLSYDGRVRNHM 343 (346)
Q Consensus 327 ~~~l~s~~~d~~v~vw~ 343 (346)
+++|+|| +..+.+-+
T Consensus 484 Kwil~Tc--~tyLlLi~ 498 (644)
T KOG2395|consen 484 KWILATC--KTYLLLID 498 (644)
T ss_pred cEEEEec--ccEEEEEE
Confidence 9777665 34555444
No 352
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=2.9e-05 Score=59.26 Aligned_cols=141 Identities=10% Similarity=0.051 Sum_probs=85.1
Q ss_pred EEEEecCCeEEEEEccCCCccceeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE-eC
Q 019059 183 AVAATCESSVQFWDLRSMGKTNSIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC-CN 261 (346)
Q Consensus 183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~-~~ 261 (346)
+...+.++.|+-++++..+....-..- +.+.---+....-+++|+.+|.|++|.....+.....+..-...|.+.- --
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~-~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERF-IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG 111 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhh-hhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence 455566888888877754422111111 2222111122226889999999999987743332222222233333332 22
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc-ceeeEEEeCCCCCcEEEEe--ecCCe
Q 019059 262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE-DSVYGLAWSSREPWIFASL--SYDGR 338 (346)
Q Consensus 262 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~d~~ 338 (346)
.++ .+.++++.|+.|+.|++.. .+.+.....|. .++..+..+..++ .++.. |.|..
T Consensus 112 ~~~-~~~c~~~~dg~ir~~n~~p-------------------~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 112 RDS-SLGCVGAQDGRIRACNIKP-------------------NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRV 170 (238)
T ss_pred ccc-ceeEEeccCCceeeecccc-------------------CceeeeeccccCCCcceeEEecCCc-eEEeeccccchh
Confidence 233 5889999999999999987 66666666666 4555555555554 66666 78888
Q ss_pred EEEeeec
Q 019059 339 VRNHMLE 345 (346)
Q Consensus 339 v~vw~~~ 345 (346)
++.|+++
T Consensus 171 ~k~W~ve 177 (238)
T KOG2444|consen 171 LKKWNVE 177 (238)
T ss_pred hhhcchh
Confidence 8888875
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.81 E-value=0.014 Score=48.48 Aligned_cols=274 Identities=11% Similarity=0.023 Sum_probs=142.0
Q ss_pred cceEEEeeccc-CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEE--eecC----CcceEEEEecCc
Q 019059 28 HTSFLTGTLSL-KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTV--FSTG----ESYGAAIWQIPE 100 (346)
Q Consensus 28 ~~~~~~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~~~~----~d~~i~vw~~~~ 100 (346)
.+|+.+..... .-..++++++-+. +++.=..-.+ -.-.+..+|+++.+.++. ++-+ ..-.|.+||..
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~--~k~lGmi~~g---~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~- 75 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADS--GKLLGMIDTG---FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ- 75 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTT--TEEEEEEEEE---SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-
T ss_pred CcEEEEECCccccccceEEEEECCC--CcEEEEeecc---cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-
Confidence 34555554322 1235677776444 3332222112 223366799999887642 3322 34469999988
Q ss_pred ccCCCCCccceeeeeeeccC-------CceEEEEeecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059 101 LYGQLNSPQLERIAALDAHV-------GKINCVLWWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLS 172 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 172 (346)
+..+...+.-.. .....+.++.+++++++.- +-...|.|.|+...+-..++... .+.
T Consensus 76 --------TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-------GC~ 140 (342)
T PF06433_consen 76 --------TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-------GCW 140 (342)
T ss_dssp --------TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-------SEE
T ss_pred --------cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-------CEE
Confidence 455544332221 1223457788888644444 34678888888865433333221 222
Q ss_pred EEEeCCCCCcEEEEecCCeEEEEEcc-CCCccceee----ccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc-
Q 019059 173 GGAWDPHDVNAVAATCESSVQFWDLR-SMGKTNSIE----HAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA- 243 (346)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~----~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~- 243 (346)
.+-=.+ .+.+.+.|.||.+....+. .|+...... ... ...-++...+. .++--+.+|.|+-.|+.....
T Consensus 141 ~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~ 218 (342)
T PF06433_consen 141 LIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAK 218 (342)
T ss_dssp EEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEE
T ss_pred EEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCccc
Confidence 222122 2457788899999998888 444432211 011 22333333333 333356778888888875321
Q ss_pred ceeeecCC----------CcceEEEEeCCCCCcEEEEecC--------CC--eEEEEecCCCCCCCCCcccccCCccccc
Q 019059 244 PIQELPGH----------THWTWAVCCNPEYDGFILSAGT--------DS--TVNLWLVSTSNHDELPSESLVESPNQRA 303 (346)
Q Consensus 244 ~~~~~~~~----------~~~v~~v~~~~~~~~~l~s~~~--------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 303 (346)
....+..- .+.-.-+++++.. ..|++.-. |+ .|-++|+.+
T Consensus 219 ~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t------------------- 278 (342)
T PF06433_consen 219 FGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKT------------------- 278 (342)
T ss_dssp EEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTT-------------------
T ss_pred ccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCC-------------------
Confidence 11111110 0122335566544 33333211 22 466667777
Q ss_pred cccccccccccceeeEEEeCCCCCcEEEEe-ecCCeEEEeeec
Q 019059 304 NSLLNSYSDYEDSVYGLAWSSREPWIFASL-SYDGRVRNHMLE 345 (346)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~v~vw~~~ 345 (346)
.+.+..+.. ..++.+|..+.+.+-+|.+. ..++.+.+||..
T Consensus 279 ~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 279 HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 777777763 34588999988765456544 568999999864
No 354
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.79 E-value=0.006 Score=53.27 Aligned_cols=183 Identities=13% Similarity=-0.057 Sum_probs=98.8
Q ss_pred CCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCC
Q 019059 77 DQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKN 156 (346)
Q Consensus 77 ~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~ 156 (346)
+..++++ +.++.+.-+|.+ +++.+=+.... ..+.+--.-.++. +++...++.+.-+|..+++..
T Consensus 120 ~~~v~v~----~~~g~l~ald~~---------tG~~~W~~~~~-~~~~ssP~v~~~~--v~v~~~~g~l~ald~~tG~~~ 183 (394)
T PRK11138 120 GGKVYIG----SEKGQVYALNAE---------DGEVAWQTKVA-GEALSRPVVSDGL--VLVHTSNGMLQALNESDGAVK 183 (394)
T ss_pred CCEEEEE----cCCCEEEEEECC---------CCCCcccccCC-CceecCCEEECCE--EEEECCCCEEEEEEccCCCEe
Confidence 3445553 577888888876 44444333222 1222111112333 566666889999999988766
Q ss_pred ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---------eeEEEeCC--CCCcEEE
Q 019059 157 AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---------VRNVDYDT--KKKHLLV 225 (346)
Q Consensus 157 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------v~~~~~~~--~~~~~l~ 225 (346)
.+...............-.. .+..++.+..++.+..+|..+++......... ...+.-+| .+. .++
T Consensus 184 W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy 260 (394)
T PRK11138 184 WTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVY 260 (394)
T ss_pred eeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEE
Confidence 55543210000000000111 12357777788999999999887655432110 01111222 233 456
Q ss_pred EecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 226 TAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 226 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.++.+|.+..+|..+.+ .+-.... .....+.. .+ ..++.++.++.+..+|..+
T Consensus 261 ~~~~~g~l~ald~~tG~-~~W~~~~--~~~~~~~~--~~-~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQ-IVWKREY--GSVNDFAV--DG-GRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred EEEcCCeEEEEECCCCC-EEEeecC--CCccCcEE--EC-CEEEEEcCCCeEEEEECCC
Confidence 66778999999998743 3322211 11111222 34 5677778899999999987
No 355
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=0.0048 Score=49.45 Aligned_cols=170 Identities=11% Similarity=0.089 Sum_probs=108.8
Q ss_pred CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccC
Q 019059 165 SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRML 241 (346)
Q Consensus 165 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 241 (346)
.+....+.++.|+|+.+.|++..+...-.++=...|+.++++.... ...|++..++. +.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence 3445569999999999999999988877777777788888776333 77788888776 5666666788888876643
Q ss_pred Ccc---------eeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc
Q 019059 242 KAP---------IQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD 312 (346)
Q Consensus 242 ~~~---------~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (346)
... +......+...-.++|+|.. ..|..+-+-.-+.||.+.............. ......+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~-------~~~~~~~-- 230 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLD-------PTADRDL-- 230 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccC-------cccccce--
Confidence 211 11111124567889999999 7777777777788887764111110000000 0000000
Q ss_pred ccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 313 YEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 313 ~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.-..|.++.|++....+|+-+.+++.+.-.+++
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 112367888887666677777777777666554
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.78 E-value=0.0094 Score=50.44 Aligned_cols=135 Identities=10% Similarity=0.089 Sum_probs=81.3
Q ss_pred CeEEEEEcCCC-CCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeec-cc--eeEEEeC
Q 019059 143 ENIFLWSLDCS-NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEH-AH--VRNVDYD 217 (346)
Q Consensus 143 ~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~~--v~~~~~~ 217 (346)
|.|.++++... ....++..........+|++++-- ++ .++++ .++.|.+|++...+ ....-.. .. +.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 88999999873 111122211111223477777655 33 34444 35889999999887 3222221 22 6666655
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCCcceeeec--CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
++ ++++|.....+.++..+.....+..+. .....++++.|-+++ ..++.+..+|.+.++....
T Consensus 139 --~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 --KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp --TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred --cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence 44 788888888888886654232233332 235668888888787 6899999999999998864
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00015 Score=63.34 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=72.5
Q ss_pred eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-ccc-ee-EEEeCCCCCcEEEEecCCCeEEEEEcccCCccee
Q 019059 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH-VR-NVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ 246 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~-v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 246 (346)
.+.-+.|+|.-..+|.+..+|.|.+..+. -+++.++. ++. ++ +++|.|||+ ++++|-.||+|++.|+.+......
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCceec
Confidence 57788999999999999999999998888 66677776 344 55 999999998 999999999999999998553333
Q ss_pred eecCCCcceEEEEeCC
Q 019059 247 ELPGHTHWTWAVCCNP 262 (346)
Q Consensus 247 ~~~~~~~~v~~v~~~~ 262 (346)
....-...|.++-|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2233456778887864
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.76 E-value=8.6e-05 Score=39.97 Aligned_cols=37 Identities=32% Similarity=0.525 Sum_probs=32.9
Q ss_pred ceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEe
Q 019059 244 PIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWL 281 (346)
Q Consensus 244 ~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd 281 (346)
++..+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 456667788999999999998 8999999999999996
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00021 Score=62.49 Aligned_cols=70 Identities=16% Similarity=0.304 Sum_probs=61.6
Q ss_pred eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE-EEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW-AVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+.-+.|+|.-+ ++|.+..+|.+-+..+. .+.+-++..|...++ +++|.||| ++||.|=.||+|++.|..+
T Consensus 23 i~~~ewnP~~d-LiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 23 IKRIEWNPKMD-LIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred eEEEEEcCccc-hhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccC
Confidence 88899999998 99999999998888776 335667776777777 99999999 9999999999999999998
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00037 Score=61.80 Aligned_cols=113 Identities=10% Similarity=0.021 Sum_probs=84.6
Q ss_pred eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-ccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee
Q 019059 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ 246 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 246 (346)
.+.--+++..+++++.|+.-|.+++|+...++....-. ..+ +.....+++.. +++.|+..|.|.++-+.+...+-.
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcc
Confidence 44445666678999999999999999987765433222 123 55666777775 899999999999998876322222
Q ss_pred ee-----cCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 247 EL-----PGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 247 ~~-----~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.+ +.|...|++++|++++ ..+++|..-|+|.+-.+.+
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 21 2367889999999999 9999999999998887776
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=7.2e-05 Score=40.29 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=32.1
Q ss_pred ccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 305 SLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 305 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
++...+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 44555667888899999999886 899999999999996
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.70 E-value=0.0058 Score=41.62 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=66.1
Q ss_pred EeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCccc
Q 019059 215 DYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSES 294 (346)
Q Consensus 215 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 294 (346)
.|.-+|..-|++|++|..|++|+-. ..+..+.. ...|+++.-... ..|+.+-.+|+|-+|+...
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~---------- 72 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ---------- 72 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCcc----------
Confidence 3455666789999999999999854 35666664 456777765554 4688899999999998764
Q ss_pred ccCCccccccccccccccccceeeEEEe---CCCCCcEEEEeecCCeEEE
Q 019059 295 LVESPNQRANSLLNSYSDYEDSVYGLAW---SSREPWIFASLSYDGRVRN 341 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~s~~~d~~v~v 341 (346)
.. -..+.... +.++.+ ..+|..-|++|-.+|.|-+
T Consensus 73 ----------Rl-WRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 ----------RL-WRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ----------ee-eeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22 22222222 455444 3345456888888888753
No 363
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.69 E-value=0.0018 Score=56.76 Aligned_cols=150 Identities=14% Similarity=0.240 Sum_probs=93.1
Q ss_pred CCceEEEEeecCCCCcEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCC----CCcEEEEecCCeEE
Q 019059 120 VGKINCVLWWSSGRHDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPH----DVNAVAATCESSVQ 193 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~ 193 (346)
-.++..++|. ||++++++.- .+|.+++=|-. +. +....|.++.|.|- ...+++.-....|.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~-------vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVt 85 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK-------VI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVT 85 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCcc-------Ee-----eccceeeeeeecCcccCCCCceEEEeccceEE
Confidence 4578899996 6776566552 34554443322 11 12236899999886 34677778889999
Q ss_pred EEEccC-----CCccce----eeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeC
Q 019059 194 FWDLRS-----MGKTNS----IEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCN 261 (346)
Q Consensus 194 i~d~~~-----~~~~~~----~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~ 261 (346)
+|.+.. .+.... +.... .....|+|... +|++-.....--+++++.....++.=-...+-|.|.+|.
T Consensus 86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT 164 (671)
T PF15390_consen 86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWT 164 (671)
T ss_pred EEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEec
Confidence 999862 121111 11111 67889999998 665544433334667765444443322456789999999
Q ss_pred CCCCcEEEEecCCCeEEEEecC
Q 019059 262 PEYDGFILSAGTDSTVNLWLVS 283 (346)
Q Consensus 262 ~~~~~~l~s~~~d~~i~iwd~~ 283 (346)
+||.+++++.+..=.-+|||-.
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCc
Confidence 9996666665555567788753
No 364
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=0.003 Score=49.52 Aligned_cols=113 Identities=7% Similarity=-0.031 Sum_probs=77.1
Q ss_pred eecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee
Q 019059 128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE 207 (346)
Q Consensus 128 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 207 (346)
..++.+.+++.++..+.+.--|..+++...+..... .+.+-+.- -+..++.|+..|.+++.+.++|.....+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhCc------eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee
Confidence 334445556677777888888888776544443322 23222222 36779999999999999999998777666
Q ss_pred ccc-e-eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059 208 HAH-V-RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (346)
Q Consensus 208 ~~~-v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (346)
... | ......+++. ++..|+.|++.+..|.++ ...+...+
T Consensus 91 ~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~-~~cVyksk 132 (354)
T KOG4649|consen 91 ILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKT-YGCVYKSK 132 (354)
T ss_pred ehhhhccceEEcCCCc-eEEEecCCCcEEEecccc-cceEEecc
Confidence 433 2 2334567777 999999999999999997 43555544
No 365
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00049 Score=61.02 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=80.6
Q ss_pred eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCC
Q 019059 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDEL 290 (346)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 290 (346)
+.--+++..++ .++.|+.-|.+++|+-...........+....+..+..+++. .++|.|+..|.|.++-++.....+.
T Consensus 36 v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcc
Confidence 33334445566 788899999999999664222223333344556667788888 8999999999999998876211110
Q ss_pred CcccccCCccccccccccc-cccccceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 291 PSESLVESPNQRANSLLNS-YSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
..+.. -+.|...|++++|++++. .+.+|...|.|..-.|+
T Consensus 114 --------------~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 114 --------------DYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELD 154 (726)
T ss_pred --------------eeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEec
Confidence 11111 123777899999999997 88999999998876654
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.61 E-value=0.011 Score=53.94 Aligned_cols=188 Identities=11% Similarity=0.090 Sum_probs=100.7
Q ss_pred cceEEeeecCCCCceEEEEee--cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEec--
Q 019059 66 NEIWDLSSCPFDQRIFSTVFS--TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSID-- 141 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-- 141 (346)
..+.+.+++|+++.++++... ...|+.-.||-.+. .... ..+..- .....-.|+|+|..+.++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--------gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--------GGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--------CCcc-eeeecC-CCCCCceECCCCCceEEEecCcc
Confidence 467889999999998887421 11244445554431 1111 222121 237788999998864444321
Q ss_pred ---------CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEE---EEccCCC-cc---ce
Q 019059 142 ---------EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF---WDLRSMG-KT---NS 205 (346)
Q Consensus 142 ---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i---~d~~~~~-~~---~~ 205 (346)
.+.+.+.+++.+.... .....|..+.|+|||..++... ++.|++ -....+. .+ ..
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~~~--------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~ 490 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAVAS--------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE 490 (591)
T ss_pred eEEEeccCCCceEEEEeccCchhhh--------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE
Confidence 1233333333222111 1123799999999999988876 477777 4434443 11 11
Q ss_pred eecc--c-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CCcceEEEEeCCCCCcEEEEecCCCeE
Q 019059 206 IEHA--H-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDSTV 277 (346)
Q Consensus 206 ~~~~--~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d~~i 277 (346)
+... . +.++.|.+++. ++ ++..++...+|.+.-.+.....+.. ...++..|+=++. -++....++.+
T Consensus 491 l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~---~iyv~~~~g~~ 562 (591)
T PRK13616 491 VGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS---TVYVTDARAVL 562 (591)
T ss_pred eecccCCccccceEecCCE-EE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc---eEEEEcCCceE
Confidence 2211 1 68899999997 44 4444444445554432322222222 2456777776653 35555556633
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.55 E-value=0.034 Score=45.88 Aligned_cols=227 Identities=12% Similarity=0.131 Sum_probs=118.9
Q ss_pred CCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC
Q 019059 25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ 104 (346)
Q Consensus 25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~ 104 (346)
...+.++++|+ ++| ++++++.......... +...|..+...|+-+.+++. .|+.+.+++++.....
T Consensus 4 ~~~~~~L~vGt----~~G-l~~~~~~~~~~~~~i~----~~~~I~ql~vl~~~~~llvL-----sd~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 4 DSWGDRLLVGT----EDG-LYVYDLSDPSKPTRIL----KLSSITQLSVLPELNLLLVL-----SDGQLYVYDLDSLEPV 69 (275)
T ss_pred ccCCCEEEEEE----CCC-EEEEEecCCccceeEe----ecceEEEEEEecccCEEEEE-----cCCccEEEEchhhccc
Confidence 44678899986 334 8888883332222222 23349999999988877776 5689999999843221
Q ss_pred CCCccce-e-----eeeeeccCCceEEEE--eecCCCCcEEEEecCCeEEEEEcCCCCCC--ceeeecccCCCceeeEEE
Q 019059 105 LNSPQLE-R-----IAALDAHVGKINCVL--WWSSGRHDKLVSIDEENIFLWSLDCSNKN--AQVQSKQSSGMLHYLSGG 174 (346)
Q Consensus 105 ~~~~~~~-~-----~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~ 174 (346)
....... . ...+ .....+...+ -...+.. .++......|.+|........ .....-. ....+..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~-~L~va~kk~i~i~~~~~~~~~f~~~~ke~~---lp~~~~~i 144 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKL-PETKGVSFFAVNGGHEGSR-RLCVAVKKKILIYEWNDPRNSFSKLLKEIS---LPDPPSSI 144 (275)
T ss_pred cccccccccccccccccc-cccCCeeEEeeccccccce-EEEEEECCEEEEEEEECCcccccceeEEEE---cCCCcEEE
Confidence 1100000 0 0011 1122334433 1123332 444444669999988764221 1222222 12378888
Q ss_pred EeCCCCCcEEEEecCCeEEEEEccCCCccceeec-------------cc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059 175 AWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-------------AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (346)
Q Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (346)
+|. ++.++.+..+ ...+.|+.++.....+.. .+ +..+.. +++. +|++- +..-.+.|..
T Consensus 145 ~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e-~Ll~~--~~~g~fv~~~- 216 (275)
T PF00780_consen 145 AFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNE-FLLCY--DNIGVFVNKN- 216 (275)
T ss_pred EEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCce-EEEEe--cceEEEEcCC-
Confidence 888 4566666544 477889886654322210 01 333333 3344 45443 2233333433
Q ss_pred CCccee--eecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 241 LKAPIQ--ELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 241 ~~~~~~--~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+.+.+ .+. -...+.++++.. .+|+..+. +.|.||++.+
T Consensus 217 -G~~~r~~~i~-W~~~p~~~~~~~---pyli~~~~-~~iEV~~~~~ 256 (275)
T PF00780_consen 217 -GEPSRKSTIQ-WSSAPQSVAYSS---PYLIAFSS-NSIEVRSLET 256 (275)
T ss_pred -CCcCcccEEE-cCCchhEEEEEC---CEEEEECC-CEEEEEECcC
Confidence 22222 232 234556666643 45666555 5599999998
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0077 Score=52.15 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=93.4
Q ss_pred eecCCCCcEEEE-ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCC-------cEEEEecCCeEEEEEccC
Q 019059 128 WWSSGRHDKLVS-IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDV-------NAVAATCESSVQFWDLRS 199 (346)
Q Consensus 128 ~~~~~~~~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~ 199 (346)
...+.+ +++.. .....++-.|++.++....-.... .|+-+.+.|+.+ .-+.|-.+..|.-||.|-
T Consensus 341 ~~~dsn-lil~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv 413 (644)
T KOG2395|consen 341 HRADSN-LILMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV 413 (644)
T ss_pred hccccc-eEeeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeecCCceEEecccc
Confidence 333444 34433 445667777777665433322221 355556666543 245566788999999984
Q ss_pred CCc-cceeeccc-------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059 200 MGK-TNSIEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271 (346)
Q Consensus 200 ~~~-~~~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 271 (346)
... .......| ..|.+-..+| .+++|+.+|.|++||- ...+....+.+...+|..|..+.+| .+|+..
T Consensus 414 ~~~~kl~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadG-Kwil~T 489 (644)
T KOG2395|consen 414 QGKNKLAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADG-KWILAT 489 (644)
T ss_pred cCcceeeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccC-cEEEEe
Confidence 332 22222222 7788777777 6899999999999996 3355566678888999999999999 555443
Q ss_pred cCCCeEEEEecCC
Q 019059 272 GTDSTVNLWLVST 284 (346)
Q Consensus 272 ~~d~~i~iwd~~~ 284 (346)
+ +..+.+-++.-
T Consensus 490 c-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 490 C-KTYLLLIDTLI 501 (644)
T ss_pred c-ccEEEEEEEec
Confidence 3 56777777764
No 369
>PRK10115 protease 2; Provisional
Probab=97.53 E-value=0.081 Score=49.67 Aligned_cols=200 Identities=9% Similarity=0.039 Sum_probs=105.5
Q ss_pred cceEEeeecCCCCceEEEEeecC-CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC--
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTG-ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE-- 142 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-- 142 (346)
-.+..+.|+|++++|+.+...+| ....|++-|+. ++..+...-... -..++|.+|++.++++...+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~---------tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE---------TGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC---------CCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCC
Confidence 34677899999998888764433 34568888886 333221111111 14689999998766665422
Q ss_pred ---CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEEEcc--CCCccceeeccc--ee
Q 019059 143 ---ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLR--SMGKTNSIEHAH--VR 212 (346)
Q Consensus 143 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~--~~~~~~~~~~~~--v~ 212 (346)
..|+.+++.++............. ... ..+..+.++++++..+. ++.+.+++.. .+.....+.... ..
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~-~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDD-TFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY 273 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCC-CEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE
Confidence 478888888774333333222111 112 23334447777665543 4678888853 333222222222 33
Q ss_pred EEEeCCCCCcEEEEecCC---CeEEEEEcccCCcceeeecCC-C-cceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059 213 NVDYDTKKKHLLVTAADE---SGIHLWDLRMLKAPIQELPGH-T-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVS 283 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~-~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~ 283 (346)
.+. +..+. +++....+ ..|...++.... ....+..+ . ..+..+.++. + .++++...++.-+++-+.
T Consensus 274 ~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~~-~-~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 274 SLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQ-QWEELIPPRENIMLEGFTLFT-D-WLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEE-eCCCE-EEEEEcCCCCCceEEEecCCCcc-cCeEEECCCCCCEEEEEEEEC-C-EEEEEEEeCCEEEEEEEc
Confidence 332 33333 44333322 234444444212 23344444 2 3677777773 3 677777778866665544
No 370
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.47 E-value=0.0062 Score=53.50 Aligned_cols=149 Identities=11% Similarity=0.125 Sum_probs=89.1
Q ss_pred eeeEEEEeCCCCCcEEEEe---cCCeEEEEEccCCCccceeeccceeEEEeCCC----CCcEEEEecCCCeEEEEEcccC
Q 019059 169 HYLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAHVRNVDYDTK----KKHLLVTAADESGIHLWDLRML 241 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~ 241 (346)
.++.+++|. ||+.++... .+|.+++=|- +.+..| +||..+.|.|- -+ .+++....+.|.+|.+...
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF--EhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF--EHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc--ceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccC
Confidence 378899998 566555433 2344433221 122222 45999999986 33 3444556689999987621
Q ss_pred C----cceeee-cCC--Ccc--eEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc
Q 019059 242 K----APIQEL-PGH--THW--TWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD 312 (346)
Q Consensus 242 ~----~~~~~~-~~~--~~~--v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (346)
. +.+..- -.. .-+ ...+.|+|.. ..|+.-.....-.+++++. ....++.--.
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~------------------d~srVkaDi~ 153 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHC------------------DSSRVKADIK 153 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeee------------------CCceEEEecc
Confidence 1 111111 011 111 2356799998 7777666555444667765 1233332223
Q ss_pred ccceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 313 YEDSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 313 ~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
..+-|.|.+|.+||++++++.+..=.-++||
T Consensus 154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred CCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 4566999999999998888888766678887
No 371
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.47 E-value=0.057 Score=46.35 Aligned_cols=205 Identities=11% Similarity=0.187 Sum_probs=92.8
Q ss_pred EEEEe-cCCeEEEEEcCCCCCCceeeecc-------cCCCceeeEEEEeCCCCCcEEEEec------CCeEEEEEccCCC
Q 019059 136 KLVSI-DEENIFLWSLDCSNKNAQVQSKQ-------SSGMLHYLSGGAWDPHDVNAVAATC------ESSVQFWDLRSMG 201 (346)
Q Consensus 136 ~~~~~-~d~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~ 201 (346)
+++.+ ..+.|+|.|+.+.-...++.... ..+ ......+..-|+|+.++++-. .|.+.++|-++.+
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g-~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTG-LSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH--EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcC-CCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 45544 68999999998544333222111 011 122344455678888887643 2568888888776
Q ss_pred ccceeeccc-----eeEEEeCCCCCcEEEEec--------------------CCCeEEEEEcccCCcceeeecCCC--cc
Q 019059 202 KTNSIEHAH-----VRNVDYDTKKKHLLVTAA--------------------DESGIHLWDLRMLKAPIQELPGHT--HW 254 (346)
Q Consensus 202 ~~~~~~~~~-----v~~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~~--~~ 254 (346)
......... -..+-|.|..+ ++++.. ...++++||+.+ +++++++.--. ..
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDLGEEGQM 246 (461)
T ss_dssp EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-TEEEEEEES-TTEEE
T ss_pred ccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-CcEeeEEecCCCCCc
Confidence 665554322 67788888776 666643 235799999997 66777776433 23
Q ss_pred eEEEEeC--CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccc-----cccccccccccccceeeEEEeCCCCC
Q 019059 255 TWAVCCN--PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ-----RANSLLNSYSDYEDSVYGLAWSSREP 327 (346)
Q Consensus 255 v~~v~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~ 327 (346)
...|+|. |+...-++.+....+|..|-...... -..+.....+.+ ...+.++.+..-..-|++|..|.|.+
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 5566664 44423344444455555554422100 000000000000 00122233333345689999999999
Q ss_pred cEEEEeecCCeEEEeeec
Q 019059 328 WIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 328 ~~l~s~~~d~~v~vw~~~ 345 (346)
++.+++-.+|.||.||++
T Consensus 325 fLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEEEETTTTEEEEEE-S
T ss_pred EEEEEcccCCcEEEEecC
Confidence 888888899999999986
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.45 E-value=0.012 Score=49.69 Aligned_cols=166 Identities=11% Similarity=0.110 Sum_probs=87.1
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcce-EEEEecCcccCCCCCccceeeeeeecc--CCceEEEEeecCCCCc
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG-AAIWQIPELYGQLNSPQLERIAALDAH--VGKINCVLWWSSGRHD 135 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~ 135 (346)
+.+..-...+..+.|+|..+.+++-|..|..+.. -++|-+.. .+.....+..+ ...+..=-|.|||..+
T Consensus 181 ~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 181 KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--------DGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--------TS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--------CCCcceeeecCCCCcccccccccCCCCEE
Confidence 3444455677889999999999999988888764 48888763 22222222222 2334445689999987
Q ss_pred EEEEe----cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC----------------eEEEE
Q 019059 136 KLVSI----DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES----------------SVQFW 195 (346)
Q Consensus 136 ~~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------------~i~i~ 195 (346)
...+. .+..|.-+|+.+++.. .+.... ....+--++++++++-=+.|. -|+++
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~-~~~~~p------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERR-RLMEMP------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EE-EEEEE-------SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred EEEeecCCCCceEEEeeCCCCCCce-EEEeCC------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence 77653 2345667777765432 121111 344555677777554433332 46677
Q ss_pred EccCCCccceee--------ccc----eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059 196 DLRSMGKTNSIE--------HAH----VRNVDYDTKKKHLLVTAADESGIHLWDLR 239 (346)
Q Consensus 196 d~~~~~~~~~~~--------~~~----v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 239 (346)
++..++...... .++ -..+.|+||++.+|+++...|...||=+.
T Consensus 326 ~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 326 DVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 777655321111 111 45689999999888888888887777544
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.012 Score=40.17 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=64.1
Q ss_pred eEEEEe---ecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059 123 INCVLW---WSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (346)
Q Consensus 123 i~~~~~---~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (346)
|+++++ ..+|..-++++++|..|++|+-+. ...+... ...+..+.-... ..++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITE------TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEec------ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence 444544 456666799999999999998652 2222222 226777776654 5588888899999997643
Q ss_pred CCccceeeccc-eeEEEe---CCCCCcEEEEecCCCeEE
Q 019059 200 MGKTNSIEHAH-VRNVDY---DTKKKHLLVTAADESGIH 234 (346)
Q Consensus 200 ~~~~~~~~~~~-v~~~~~---~~~~~~~l~~~~~dg~i~ 234 (346)
.+-.++..+ +.++++ .-+|..-|++|-.+|.|-
T Consensus 73 --RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 --RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 233333333 444443 444544688888888874
No 374
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.38 E-value=0.015 Score=45.86 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=69.4
Q ss_pred CcEEEEecCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE
Q 019059 181 VNAVAATCESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC 259 (346)
Q Consensus 181 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~ 259 (346)
.+++.++..+.+.--|..+|+.......+. +.+-+.- -|+ .++.|...|.+++.+..+ +..+..+..-..-=....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECC-EEEEEEccCcEEEEEecc-hhheeeeeehhhhccceE
Confidence 456677778888888998888665433233 3333322 355 688899999999999988 434555543222112334
Q ss_pred eCCCCCcEEEEecCCCeEEEEecCC
Q 019059 260 CNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 260 ~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
..+++ .++..|+.|+..+..|.++
T Consensus 101 ~d~~~-glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 101 CDFDG-GLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred EcCCC-ceEEEecCCCcEEEecccc
Confidence 67788 8999999999999999998
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.37 E-value=0.01 Score=54.22 Aligned_cols=101 Identities=10% Similarity=-0.025 Sum_probs=61.6
Q ss_pred eeEEEEeCCCCCcEEEEe------cCC--eEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCC----------
Q 019059 170 YLSGGAWDPHDVNAVAAT------CES--SVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADE---------- 230 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~------~d~--~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d---------- 230 (346)
.+...+++|+++.++... .|. .|.+++. +.....+..+. ...-.|+|+|. .+++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g~~~t~PsWspDG~-~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEGHSLTRPSWSLDAD-AVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecCCCCCCceECCCCC-ceEEEecCcceEEEeccC
Confidence 678889999999887765 243 5555564 22224444344 88999999987 44444322
Q ss_pred --CeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059 231 --SGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNL 279 (346)
Q Consensus 231 --g~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i 279 (346)
+.+.+.+++. ..... .....|..+.||||| ..++... ++.|.+
T Consensus 428 ~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v~V 472 (591)
T PRK13616 428 ATGQLARTPVDA-SAVAS---RVPGPISELQLSRDG-VRAAMII-GGKVYL 472 (591)
T ss_pred CCceEEEEeccC-chhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEEEE
Confidence 2333333332 11111 235679999999999 6665544 467766
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.052 Score=43.55 Aligned_cols=203 Identities=10% Similarity=0.065 Sum_probs=112.8
Q ss_pred eeeeccccceEEeeecCCCCceEEEEee-cCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEE
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKL 137 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 137 (346)
+.+++|. .|||+|..|.++-.+ ...-|.|-|||... ..+.+-.+..|.-.-..+.|.+||+.+++
T Consensus 113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~--------~fqrvgE~~t~GiGpHev~lm~DGrtlvv 178 (366)
T COG3490 113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDARE--------GFQRVGEFSTHGIGPHEVTLMADGRTLVV 178 (366)
T ss_pred ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEeccc--------ccceecccccCCcCcceeEEecCCcEEEE
Confidence 3455664 589999999887411 11236799999873 45667778788777789999999995444
Q ss_pred EEe------cCC-----------eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----CCeEEEE
Q 019059 138 VSI------DEE-----------NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----ESSVQFW 195 (346)
Q Consensus 138 ~~~------~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~ 195 (346)
+.+ .-| ++.+.|..+++...+.... ...+...+..++..+|+..++..-. |---.+=
T Consensus 179 anGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp-~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg 257 (366)
T COG3490 179 ANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP-ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVG 257 (366)
T ss_pred eCCceecccccCccccchhhcCccEEEEeccccchhhhccCc-hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCccee
Confidence 433 001 1222332333222211111 1123446777888877765544432 2112222
Q ss_pred EccCCCccceeecc--------c-eeEEEeCCCCCcEEEEec-CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCC
Q 019059 196 DLRSMGKTNSIEHA--------H-VRNVDYDTKKKHLLVTAA-DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYD 265 (346)
Q Consensus 196 d~~~~~~~~~~~~~--------~-v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 265 (346)
-...++++..+..+ + |-+|+.+.+.. +++..+ ..+..-+||..+ +..+..-. -.....++-...|
T Consensus 258 ~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g-lV~lTSP~GN~~vi~da~t-G~vv~~a~--l~daaGva~~~~g- 332 (366)
T COG3490 258 HFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG-LVALTSPRGNRAVIWDAAT-GAVVSEAA--LPDAAGVAAAKGG- 332 (366)
T ss_pred eccCCCcCcccCCCHHHHHHHHhhhhheeecccCC-eEEEecCCCCeEEEEEcCC-CcEEeccc--ccccccceeccCc-
Confidence 22334444333321 2 88899987776 554444 445678999987 43332211 1223344444444
Q ss_pred cEEEEecCCCeEEEEecC
Q 019059 266 GFILSAGTDSTVNLWLVS 283 (346)
Q Consensus 266 ~~l~s~~~d~~i~iwd~~ 283 (346)
|+..+.+|.+.++...
T Consensus 333 --f~vssg~G~~~~~s~~ 348 (366)
T COG3490 333 --FAVSSGQGRIIFYSRA 348 (366)
T ss_pred --eEEecCCceEEecccc
Confidence 6666778888887443
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.06 Score=43.21 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=122.3
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcce-EEEEecCcccCCCCCccceeeeeee
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG-AAIWQIPELYGQLNSPQLERIAALD 117 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~ 117 (346)
..+++..+.-++..++-+... .-+..-..|+++|..++-++.+ -.-|+ ..++|.. ..+...++.
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~~---~lpaR~Hgi~~~p~~~ravafA---RrPGtf~~vfD~~---------~~~~pv~~~ 108 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFAT---ALPARGHGIAFHPALPRAVAFA---RRPGTFAMVFDPN---------GAQEPVTLV 108 (366)
T ss_pred ccCCceeEEEEccCCceeeee---ecccccCCeecCCCCcceEEEE---ecCCceEEEECCC---------CCcCcEEEe
Confidence 445666666666655433322 2345566789999877666553 23333 5678876 233333332
Q ss_pred ccCCc--eEEEEeecCCCCcEEEEec-----CCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--
Q 019059 118 AHVGK--INCVLWWSSGRHDKLVSID-----EENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-- 188 (346)
Q Consensus 118 ~~~~~--i~~~~~~~~~~~~~~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 188 (346)
..++. --.-.|+|||.+ ++++-. .|.|-|||.+.+-+ ...+...|--....+.|.+||+.++.+..
T Consensus 109 s~~~RHfyGHGvfs~dG~~-LYATEndfd~~rGViGvYd~r~~fq----rvgE~~t~GiGpHev~lm~DGrtlvvanGGI 183 (366)
T COG3490 109 SQEGRHFYGHGVFSPDGRL-LYATENDFDPNRGVIGVYDAREGFQ----RVGEFSTHGIGPHEVTLMADGRTLVVANGGI 183 (366)
T ss_pred cccCceeecccccCCCCcE-EEeecCCCCCCCceEEEEecccccc----eecccccCCcCcceeEEecCCcEEEEeCCce
Confidence 22111 112369999995 555522 37899999984321 11222233335577889999998887643
Q ss_pred ----C------------CeEEEEEccCCCccceeecc----c--eeEEEeCCCCCcEEEEecCCCe----EEEEEcccCC
Q 019059 189 ----E------------SSVQFWDLRSMGKTNSIEHA----H--VRNVDYDTKKKHLLVTAADESG----IHLWDLRMLK 242 (346)
Q Consensus 189 ----d------------~~i~i~d~~~~~~~~~~~~~----~--v~~~~~~~~~~~~l~~~~~dg~----i~i~d~~~~~ 242 (346)
| -++.+.|..++..+.+...+ + +..++..++|. +++.+-..|. --+.-.....
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g 262 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKG 262 (366)
T ss_pred ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCC
Confidence 1 13455666666655433322 1 88889999887 4443322221 1111111112
Q ss_pred cceeeec-------CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 243 APIQELP-------GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 243 ~~~~~~~-------~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.++.-+. .....|-+|+.+.+.....+|.-..+...+||..+
T Consensus 263 ~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 263 EPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred CcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 2333222 12245677887765523444444556788999998
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.041 Score=45.82 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=81.9
Q ss_pred EEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccce
Q 019059 126 VLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNS 205 (346)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 205 (346)
-.|.++...++.+--..+.|.-|+..++... ..... + .+.++..-..+..|++. .. .+++++..++.....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p---~---~~~~~~~~d~~g~Lv~~-~~-g~~~~~~~~~~~~t~ 100 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP---G---GFSSGALIDAGGRLIAC-EH-GVRLLDPDTGGKITL 100 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC---C---CcccceeecCCCeEEEE-cc-ccEEEeccCCceeEE
Confidence 3577877765555556789999998755321 11111 1 23333333233334443 33 366677655544222
Q ss_pred ee---ccc----eeEEEeCCCCCcEEEEecC-----------CCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcE
Q 019059 206 IE---HAH----VRNVDYDTKKKHLLVTAAD-----------ESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGF 267 (346)
Q Consensus 206 ~~---~~~----v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 267 (346)
+. .+. .+.+...|+|. +.++... -|.++.+|.. ...++.+..+-..-+.|+|||++ +.
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~~~l~~~~~~~~NGla~SpDg-~t 176 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPD--GGVVRLLDDDLTIPNGLAFSPDG-KT 176 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCC--CCEEEeecCcEEecCceEECCCC-CE
Confidence 21 111 78899999998 4444333 1334444432 44455555556667899999999 55
Q ss_pred EEEe-cCCCeEEEEecC
Q 019059 268 ILSA-GTDSTVNLWLVS 283 (346)
Q Consensus 268 l~s~-~~d~~i~iwd~~ 283 (346)
|+.+ +..+.|.-|++.
T Consensus 177 ly~aDT~~~~i~r~~~d 193 (307)
T COG3386 177 LYVADTPANRIHRYDLD 193 (307)
T ss_pred EEEEeCCCCeEEEEecC
Confidence 5544 445788888776
No 379
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.28 E-value=0.11 Score=45.51 Aligned_cols=197 Identities=9% Similarity=0.066 Sum_probs=95.3
Q ss_pred cCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEee
Q 019059 50 SSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWW 129 (346)
Q Consensus 50 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 129 (346)
+..+..+. .....+ +.|-++.|..+...+ +. ..||.++++|+.... .. .-+..+.........+....+.
T Consensus 67 s~sG~ll~-~i~w~~-~~iv~~~wt~~e~Lv-vV----~~dG~v~vy~~~G~~-~f--sl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 67 SSSGKLLS-SIPWDS-GRIVGMGWTDDEELV-VV----QSDGTVRVYDLFGEF-QF--SLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred CCCCCEeE-EEEECC-CCEEEEEECCCCeEE-EE----EcCCEEEEEeCCCce-ee--chhhhccccCcccccccccccC
Confidence 33334443 333333 899999999865544 44 389999999985110 00 0011111122222333333333
Q ss_pred cCCCCcEEEEecCCeEEEEEcCCCC-CCceeeecc---cCCC-ceeeEE-EEeCCCCCcEEEEecCCeEEEEEccCCCcc
Q 019059 130 SSGRHDKLVSIDEENIFLWSLDCSN-KNAQVQSKQ---SSGM-LHYLSG-GAWDPHDVNAVAATCESSVQFWDLRSMGKT 203 (346)
Q Consensus 130 ~~~~~~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~---~~~~-~~~v~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 203 (346)
.+| +++.+ .++.+.+..-.... ......... ...+ ...... ..++.+....+....++.+.+.+-...+.
T Consensus 137 ~~G--ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 137 KNG--IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CCC--EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence 344 23333 34454443322111 101110000 0000 001111 23444455555555566677555443222
Q ss_pred ceeec-cceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCC-CcceEEEEeCCCC
Q 019059 204 NSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGH-THWTWAVCCNPEY 264 (346)
Q Consensus 204 ~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~v~~~~~~ 264 (346)
+.. +++..++.||+++ .++.-..+|.+.+.+..- .+....+... ......+.|+-+.
T Consensus 213 --i~~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 213 --IDSDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDF-SEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred --ccCCCCeEEEEECCCCC-EEEEEECCCCEEEEECcc-cceeEEeecCcCCCCcEEEEECCC
Confidence 221 2399999999998 778778889998887653 4344444432 2445566666554
No 380
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.27 E-value=0.058 Score=43.82 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=86.1
Q ss_pred eeEEEEeCCCCCcEEEEe---cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEE-cccCCcc
Q 019059 170 YLSGGAWDPHDVNAVAAT---CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWD-LRMLKAP 244 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~ 244 (346)
.+.+.++++++..+++.. ....++++. .+........+. +....|++++. +.+....+...+++. .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCC-EEEEEcCCCceEEEEecCCCcce
Confidence 578889999999887776 234555554 444333333344 88999999986 666656566666663 2221211
Q ss_pred eeeecCC--CcceEEEEeCCCCCcEEEEec---CCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeE
Q 019059 245 IQELPGH--THWTWAVCCNPEYDGFILSAG---TDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYG 319 (346)
Q Consensus 245 ~~~~~~~--~~~v~~v~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (346)
...+... ...|..+.+|||| ..++... .++.|.+=-+...... .+.....+..........+.+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG-~RvA~v~~~~~~~~v~va~V~r~~~g----------~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDG-TRVAVVVEDGGGGRVYVAGVVRDGDG----------VPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred eEEecccccCCceEEEEECCCC-cEEEEEEecCCCCeEEEEEEEeCCCC----------CcceeccceEecccccCccee
Confidence 2222211 1289999999999 5555444 3467777665431100 000011222222233456899
Q ss_pred EEeCCCCCcEEEEee
Q 019059 320 LAWSSREPWIFASLS 334 (346)
Q Consensus 320 ~~~~~~~~~~l~s~~ 334 (346)
++|.+++. +++.+.
T Consensus 171 v~W~~~~~-L~V~~~ 184 (253)
T PF10647_consen 171 VAWSDDST-LVVLGR 184 (253)
T ss_pred eeecCCCE-EEEEeC
Confidence 99999986 554444
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.23 E-value=0.11 Score=44.67 Aligned_cols=232 Identities=10% Similarity=0.055 Sum_probs=97.3
Q ss_pred CCeEEEEEecCCC---CeEEEeeeeccc-cceEEeeec-----------CCCCceEEEEeecCCcceEEEEecCcccCCC
Q 019059 41 ENEVHLLRLSSGG---TELICEGLFSHP-NEIWDLSSC-----------PFDQRIFSTVFSTGESYGAAIWQIPELYGQL 105 (346)
Q Consensus 41 ~~~i~~~~~~~~~---~~~~~~~~~~h~-~~v~~~~~~-----------~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~ 105 (346)
...+..++++++. .+++-+.-..+. ++....-|+ .+.++|++- +=..+.|.|.|+.....
T Consensus 36 pD~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~P---gL~SsrIyviD~~~dPr-- 110 (461)
T PF05694_consen 36 PDYLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILP---GLRSSRIYVIDTKTDPR-- 110 (461)
T ss_dssp --EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEE---BTTT--EEEEE--S-TT--
T ss_pred CCeEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEee---eeccCcEEEEECCCCCC--
Confidence 3456667776643 123323323333 344444443 245566664 34667899999873211
Q ss_pred CCccceeeeeeec---cC----CceEEEEeecCCCCcEEEE-ec-----CCeEEEEEcCCCCCCceeeecccCCCceeeE
Q 019059 106 NSPQLERIAALDA---HV----GKINCVLWWSSGRHDKLVS-ID-----EENIFLWSLDCSNKNAQVQSKQSSGMLHYLS 172 (346)
Q Consensus 106 ~~~~~~~~~~~~~---~~----~~i~~~~~~~~~~~~~~~~-~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 172 (346)
..+..+.+.. +. ..-..+.--|+|. +++++ +. -|.+.+.|-++-+.... .....+....-+
T Consensus 111 ---~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g~--We~~~~~~~~gY 184 (461)
T PF05694_consen 111 ---KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDGETFEVKGR--WEKDRGPQPFGY 184 (461)
T ss_dssp ---S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE----SB-TT-----
T ss_pred ---CCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcCccccccce--eccCCCCCCCCC
Confidence 1222333321 11 1222333446776 45555 32 25566777654321111 111112233567
Q ss_pred EEEeCCCCCcEEEEec--------------------CCeEEEEEccCCCccceeeccc----eeEEEeC--CCCCcEEEE
Q 019059 173 GGAWDPHDVNAVAATC--------------------ESSVQFWDLRSMGKTNSIEHAH----VRNVDYD--TKKKHLLVT 226 (346)
Q Consensus 173 ~~~~~~~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~----v~~~~~~--~~~~~~l~~ 226 (346)
.+.|.|..+.++++.. ..++.+||+.+.+.++++..+. +..|.|. |+..+-++.
T Consensus 185 Dfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg 264 (461)
T PF05694_consen 185 DFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVG 264 (461)
T ss_dssp -EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEE
T ss_pred CeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEE
Confidence 7788887777776532 2579999999999998887653 6677764 555544555
Q ss_pred ecCCCeEEEEEcccCCc----ceeeec-----------------CCCcceEEEEeCCCCCcEEEEe-cCCCeEEEEecCC
Q 019059 227 AADESGIHLWDLRMLKA----PIQELP-----------------GHTHWTWAVCCNPEYDGFILSA-GTDSTVNLWLVST 284 (346)
Q Consensus 227 ~~~dg~i~i~d~~~~~~----~~~~~~-----------------~~~~~v~~v~~~~~~~~~l~s~-~~d~~i~iwd~~~ 284 (346)
+.-..+|..|--...+. .+..+. .-..-|+.|..|.|. ++|... =.+|.|+-||+..
T Consensus 265 ~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 265 CALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SS
T ss_pred EeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCC
Confidence 44555555553321111 111111 112457899999999 666554 4689999999987
No 382
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.21 E-value=0.11 Score=44.18 Aligned_cols=242 Identities=9% Similarity=0.039 Sum_probs=117.8
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccc-eeeeee----eccCCceEEEEeecC---CCCcEEE
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL-ERIAAL----DAHVGKINCVLWWSS---GRHDKLV 138 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~----~~~~~~i~~~~~~~~---~~~~~~~ 138 (346)
..++|+|.|+++.+++- ..|.|.+++.+. .. ..+..+ .........++++|+ +.+++++
T Consensus 3 ~P~~~a~~pdG~l~v~e-----~~G~i~~~~~~g--------~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~ 69 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAE-----RSGRIWVVDKDG--------SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVY 69 (331)
T ss_dssp SEEEEEEETTSCEEEEE-----TTTEEEEEETTT--------EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEE
T ss_pred CceEEEEeCCCcEEEEe-----CCceEEEEeCCC--------cCcceecccccccccccCCcccceeccccCCCCEEEEE
Confidence 45789999998666653 688999998331 11 122222 233557799999994 3434444
Q ss_pred EecC--------CeEEEEEcCCCCC----Cceeeec-cc-CCCceeeEEEEeCCCCCcEEEEecC-------------Ce
Q 019059 139 SIDE--------ENIFLWSLDCSNK----NAQVQSK-QS-SGMLHYLSGGAWDPHDVNAVAATCE-------------SS 191 (346)
Q Consensus 139 ~~~d--------~~i~vwd~~~~~~----~~~~~~~-~~-~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~ 191 (346)
.... ..|.-|....... ...+... .. ....+....++|.|++.+.++.+.. |.
T Consensus 70 ~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ 149 (331)
T PF07995_consen 70 YTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGK 149 (331)
T ss_dssp EEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTE
T ss_pred EEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccce
Confidence 4421 3455555543310 1111111 11 1123356679999999766666532 34
Q ss_pred EEEEEccCCC------------ccceeeccc--eeEEEeCCC-CCcEEEEe-cCCCeEEEEEcccCC-------------
Q 019059 192 VQFWDLRSMG------------KTNSIEHAH--VRNVDYDTK-KKHLLVTA-ADESGIHLWDLRMLK------------- 242 (346)
Q Consensus 192 i~i~d~~~~~------------~~~~~~~~~--v~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~------------- 242 (346)
|.-.+....- ....+..+. ...++|+|. +. ++++- +.+..=.|--++...
T Consensus 150 ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~ 228 (331)
T PF07995_consen 150 ILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKY 228 (331)
T ss_dssp EEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCST
T ss_pred EEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCC
Confidence 5444543210 122223334 889999999 65 44432 222222222222111
Q ss_pred ---------------cceeeecCCCcceEEEEeCC-------CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc
Q 019059 243 ---------------APIQELPGHTHWTWAVCCNP-------EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN 300 (346)
Q Consensus 243 ---------------~~~~~~~~~~~~v~~v~~~~-------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (346)
.|+..+..| ..+..+.|-. .+ .+|++.-..+.|....+....
T Consensus 229 ~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g-~~~~~~~~~~~i~~~~~~~~~-------------- 292 (331)
T PF07995_consen 229 SGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRG-DLFVADYGGGRIWRLDLDEDG-------------- 292 (331)
T ss_dssp TSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTT-EEEEEETTTTEEEEEEEETTE--------------
T ss_pred CCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccC-cEEEecCCCCEEEEEeeecCC--------------
Confidence 123333333 4455555542 23 455555555677766665300
Q ss_pred ccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEE
Q 019059 301 QRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVR 340 (346)
Q Consensus 301 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~ 340 (346)
...+....+......+.++++.|||. ++++...+|.|+
T Consensus 293 -~~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy 330 (331)
T PF07995_consen 293 -SVTEEEEFLGGFGGRPRDVAQGPDGA-LYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEEECTTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred -CccceEEccccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence 00111111234444689999999997 777777788764
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.04 E-value=0.14 Score=42.43 Aligned_cols=190 Identities=12% Similarity=0.102 Sum_probs=89.9
Q ss_pred eEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-
Q 019059 123 INCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG- 201 (346)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~- 201 (346)
...+....++. ....+..|.| |....+....+....... ..+..+.-++++.+++++.....+.-||.-...
T Consensus 106 ~~~i~~l~~~~--~~l~~~~G~i--y~T~DgG~tW~~~~~~~~---gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w 178 (302)
T PF14870_consen 106 PFGITALGDGS--AELAGDRGAI--YRTTDGGKTWQAVVSETS---GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW 178 (302)
T ss_dssp EEEEEEEETTE--EEEEETT--E--EEESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-
T ss_pred eeEEEEcCCCc--EEEEcCCCcE--EEeCCCCCCeeEcccCCc---ceeEeEEECCCCcEEEEECcccEEEEecCCCccc
Confidence 34444444443 3333444554 444445545555444333 378888889999977777655555667754322
Q ss_pred ccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEccc----CCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059 202 KTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRM----LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 202 ~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
..+...... +..+.|.|++. +.+.+ ..|.|+.=+... ..+++..+......+..++|.+++ ...++|+. |.
T Consensus 179 ~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~-G~ 254 (302)
T PF14870_consen 179 QPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGGS-GT 254 (302)
T ss_dssp EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEEST-T-
T ss_pred eEEccCccceehhceecCCCC-EEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC-CEEEEeCC-cc
Confidence 122222123 99999999987 55544 778888776211 111122222233457899999988 77776664 43
Q ss_pred EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEe
Q 019059 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNH 342 (346)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw 342 (346)
+ +.....+ ...+.......-....+.|.|.+..+ -...+.+|.+.-|
T Consensus 255 l-~~S~DgG----------------ktW~~~~~~~~~~~n~~~i~f~~~~~--gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 255 L-LVSTDGG----------------KTWQKDRVGENVPSNLYRIVFVNPDK--GFVLGQDGVLLRY 301 (302)
T ss_dssp E-EEESSTT----------------SS-EE-GGGTTSSS---EEEEEETTE--EEEE-STTEEEEE
T ss_pred E-EEeCCCC----------------ccceECccccCCCCceEEEEEcCCCc--eEEECCCcEEEEe
Confidence 4 2333320 01222222223344578888876543 3455668877655
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.0022 Score=49.30 Aligned_cols=140 Identities=9% Similarity=0.030 Sum_probs=82.0
Q ss_pred cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee---ccc-
Q 019059 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE---HAH- 210 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~- 210 (346)
++.+.+.++.|.-++++..+......... ... .....-+..+++++.+|.|.+|.....-...... ...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~----~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFI----DEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhh----hcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccc
Confidence 35566778888888877432211111111 111 1112234668899999999999887222111111 111
Q ss_pred eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC-cceEEEEeCCCCCcEEEEe--cCCCeEEEEecCC
Q 019059 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT-HWTWAVCCNPEYDGFILSA--GTDSTVNLWLVST 284 (346)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~s~--~~d~~i~iwd~~~ 284 (346)
...|.--.++. +..++..+|.|+.|++.. .+.+-....|+ .++.....+..+ .+++.+ |.|..++.|++..
T Consensus 105 ~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 105 DLGIPNGRDSS-LGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccccccc-eeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 23333333443 888999999999999885 43444444565 455555555555 677777 7788888888875
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.003 Score=59.11 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=72.3
Q ss_pred EEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccc
Q 019059 223 LLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQR 302 (346)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (346)
.++.|+..|.+-..|.+..-.+...-..-.++|++++|+.+| ..++.|-.+|.|.+||+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~------------------ 161 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHR------------------ 161 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccC------------------
Confidence 678888889999999875222233333356899999999999 9999999999999999998
Q ss_pred ccccccccccccceeeEE---EeCCCCCcEEEEeecCCeEEEeee
Q 019059 303 ANSLLNSYSDYEDSVYGL---AWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 303 ~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
+++++.+..|..+.+++ .+..++. .+.++...|. +|.+
T Consensus 162 -~k~l~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 -AKILKVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred -CcceeeeeecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 77887777666554443 4445554 6667766664 5543
No 386
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.81 E-value=0.0057 Score=34.71 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=27.2
Q ss_pred ceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 315 DSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 315 ~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
..|..++|+|... ++|.+..||.|.++.+.
T Consensus 12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 4589999999997 99999999999999875
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.80 E-value=0.0056 Score=34.72 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=28.4
Q ss_pred CcceEEEEeCCCCCcEEEEecCCCeEEEEecC
Q 019059 252 THWTWAVCCNPEYDGFILSAGTDSTVNLWLVS 283 (346)
Q Consensus 252 ~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~ 283 (346)
...|..++|+|.. .+||.++.||.|.+|.++
T Consensus 11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCC-CEEEEEECCCeEEEEECC
Confidence 4568999999999 999999999999999985
No 388
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.77 E-value=0.03 Score=48.44 Aligned_cols=146 Identities=10% Similarity=0.049 Sum_probs=80.4
Q ss_pred eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc-eeeccceeEEEeCCCCCcEEEEecCCCeEEEEEcccC-------
Q 019059 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN-SIEHAHVRNVDYDTKKKHLLVTAADESGIHLWDLRML------- 241 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------- 241 (346)
.|..+.|.++...++++...|.|.+|.....+... .-... -....+.+.. ..++.-.+-|++..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP-DLDYNFRRFS-------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S---------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc-ccCccccccc-------ccCCCcceEEehhhCCccccc
Confidence 58889999998999999999999999877654332 11100 1112211110 11112223343321
Q ss_pred -CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccc-------cc-c
Q 019059 242 -KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNS-------YS-D 312 (346)
Q Consensus 242 -~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~ 312 (346)
-.|...+....++|++++.|.-| ++|.|..+|.+.|.|+|. ...++. .. .
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RG-------------------PavI~~~~i~~~~~~~~ 133 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRG-------------------PAVIYNENIRESFLSKS 133 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTT-------------------TEEEEEEEGGG--T-SS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCC-------------------CeEEeeccccccccccc
Confidence 12445555568999999998665 899999999999999986 333332 11 1
Q ss_pred ccceeeEEEeCC-----CC--CcEEEEeecCCeEEEeee
Q 019059 313 YEDSVYGLAWSS-----RE--PWIFASLSYDGRVRNHML 344 (346)
Q Consensus 313 ~~~~v~~~~~~~-----~~--~~~l~s~~~d~~v~vw~~ 344 (346)
....|+++.|.- |+ .-+|+.|...|.+.+|.+
T Consensus 134 ~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 134 SSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKI 172 (395)
T ss_dssp ----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred cccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence 234577888862 22 136788888899999976
No 389
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.69 E-value=0.0002 Score=60.96 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=102.0
Q ss_pred eEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec-cceeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec
Q 019059 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP 249 (346)
Q Consensus 171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 249 (346)
.....|-|.+..++.++.+..+..||-. ++....... +....++|+.+++.+++.+-..+.+.+||+.+.. ..++.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey--tqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY--TQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh--HHHHh
Confidence 3445788888889999999999999965 333333332 2377899999998667777788999999998532 22222
Q ss_pred C-CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCc
Q 019059 250 G-HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW 328 (346)
Q Consensus 250 ~-~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 328 (346)
. -...-.-+.|++.. ..++.+...+.+.|++..+ ...+-....|...+++++|.+.+
T Consensus 114 ~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgt-------------------sR~iiv~Gkh~RRgtq~av~lEd-- 171 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGT-------------------SRRIIVMGKHQRRGTQIAVTLED-- 171 (615)
T ss_pred ccCcchHHHHhhccCC-ccccccccccceEEEeccc-------------------hhhhhhhcccccceeEEEecccc--
Confidence 1 11122226799988 7888888899999999988 44454454588889999999976
Q ss_pred EEEEeecCCeE
Q 019059 329 IFASLSYDGRV 339 (346)
Q Consensus 329 ~l~s~~~d~~v 339 (346)
+.+.++.|..+
T Consensus 172 ~vil~dcd~~L 182 (615)
T KOG2247|consen 172 YVILCDCDNTL 182 (615)
T ss_pred eeeecCcHHHH
Confidence 46667666543
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.66 E-value=0.22 Score=38.95 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=84.1
Q ss_pred cceEEeeecCCCCceEEEEeecCC-----cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEe
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGE-----SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSI 140 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 140 (346)
...++-..+|+|++..-+...-+. .+.++.|-.. ..+..+...-..-+.++|+.+.+.+.+.-+
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-----------h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-----------HQVELIWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC-----------CCceeeehhccCCccccccccCcEEEEEcc
Confidence 456677789999985554311111 2345555443 111222233334467899988886555557
Q ss_pred cCCeEEEEE--cCCCCCCce--eeeccc--CCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc--ee
Q 019059 141 DEENIFLWS--LDCSNKNAQ--VQSKQS--SGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH--VR 212 (346)
Q Consensus 141 ~d~~i~vwd--~~~~~~~~~--~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--v~ 212 (346)
.+-.|.-|| ..++..... +..... +......-+++...+|...++.-+.++|...|..+++.+.++..+. ++
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence 788887788 444432111 111000 0011122344556677777777788999999999999988887555 99
Q ss_pred EEEeCC
Q 019059 213 NVDYDT 218 (346)
Q Consensus 213 ~~~~~~ 218 (346)
+++|--
T Consensus 258 sccFgG 263 (310)
T KOG4499|consen 258 SCCFGG 263 (310)
T ss_pred EEEecC
Confidence 999963
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.62 E-value=0.27 Score=39.57 Aligned_cols=127 Identities=12% Similarity=0.127 Sum_probs=75.8
Q ss_pred CcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCc
Q 019059 89 ESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGML 168 (346)
Q Consensus 89 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 168 (346)
.++...+||.. +.+.+.++.- .+.=..++ .+++. ++.+.....++++|..+-+....+.........
T Consensus 108 k~~~~f~yd~~---------tl~~~~~~~y-~~EGWGLt--~dg~~-Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv 174 (264)
T PF05096_consen 108 KEGTGFVYDPN---------TLKKIGTFPY-PGEGWGLT--SDGKR-LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV 174 (264)
T ss_dssp SSSEEEEEETT---------TTEEEEEEE--SSS--EEE--ECSSC-EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred cCCeEEEEccc---------cceEEEEEec-CCcceEEE--cCCCE-EEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence 67789999987 6777777743 34556666 56665 666644678999998765544444443333334
Q ss_pred eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee----------------ccc-eeEEEeCCCCCcEEEEecC
Q 019059 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE----------------HAH-VRNVDYDTKKKHLLVTAAD 229 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------~~~-v~~~~~~~~~~~~l~~~~~ 229 (346)
..++.+.|. +|...+-.=....|...|..+|+....+. ... .+.||++|..+.+++||=.
T Consensus 175 ~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 175 SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp --EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 466777776 45433333346677778888887554331 012 8999999998867777643
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.012 Score=55.37 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=70.2
Q ss_pred CCcEEEEecCCeEEEEEccCCCc-cceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceE
Q 019059 180 DVNAVAATCESSVQFWDLRSMGK-TNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTW 256 (346)
Q Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 256 (346)
+..++.+++.|.+-..|+...-. ...-.... |++++|+.+|. +++.|-.+|.|.+||+.. +++++.+..|..+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 45577888888998888876422 11111111 99999999998 899999999999999997 567888877776655
Q ss_pred EE---EeCCCCCcEEEEecCCCeEEEEec
Q 019059 257 AV---CCNPEYDGFILSAGTDSTVNLWLV 282 (346)
Q Consensus 257 ~v---~~~~~~~~~l~s~~~d~~i~iwd~ 282 (346)
.+ .+..++ ..+.++..-|. +|.+
T Consensus 177 ~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 44 455566 67788777776 5544
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.59 E-value=0.23 Score=45.55 Aligned_cols=207 Identities=11% Similarity=0.038 Sum_probs=102.0
Q ss_pred ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecC------CeEEEEEcCCCCCCceeeeccc
Q 019059 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDE------ENIFLWSLDCSNKNAQVQSKQS 164 (346)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d------~~i~vwd~~~~~~~~~~~~~~~ 164 (346)
..+..+|... ..+.....+. ....-.+++...+ .++++||.| ..+..||..+++ .........
T Consensus 301 ~~ve~yd~~~-------~~w~~~a~m~-~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~ 369 (571)
T KOG4441|consen 301 RSVECYDPKT-------NEWSSLAPMP-SPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNT 369 (571)
T ss_pred ceeEEecCCc-------CcEeecCCCC-cccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCc-eeccCCccC
Confidence 3577777662 2334444443 2223444555433 367777777 457788887665 222221111
Q ss_pred CCCceeeEEEEeCCCCCcEEEEecCC-----eEEEEEccCCCccce--eeccc--eeEEEeCCCCCcEEEEecCCC----
Q 019059 165 SGMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSMGKTNS--IEHAH--VRNVDYDTKKKHLLVTAADES---- 231 (346)
Q Consensus 165 ~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~--~~~~~--v~~~~~~~~~~~~l~~~~~dg---- 231 (346)
..+ .. +++.. +|...++||.|| ++..||..+.+-... +.... .....+ ++. +.++|+.++
T Consensus 370 ~R~--~~-~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 370 KRS--DF-GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNC 442 (571)
T ss_pred ccc--cc-eeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCE-EEEEcCcCCCccc
Confidence 111 11 12211 467777777764 577899887653221 21111 222222 354 788887554
Q ss_pred --eEEEEEcccCC-cceeeecCCCcceEEEEeCCCCCcEEEEecCCC-----eEEEEecCCCCCCCCCcccccCCccccc
Q 019059 232 --GIHLWDLRMLK-APIQELPGHTHWTWAVCCNPEYDGFILSAGTDS-----TVNLWLVSTSNHDELPSESLVESPNQRA 303 (346)
Q Consensus 232 --~i~i~d~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 303 (346)
++..||..+.. ..+..+..-..... ++. -++ .+.+.||.|+ +|..||..+ ..
T Consensus 443 l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~-~iYvvGG~~~~~~~~~VE~ydp~~-----------------~~ 502 (571)
T KOG4441|consen 443 LNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNG-KIYVVGGFDGTSALSSVERYDPET-----------------NQ 502 (571)
T ss_pred cceEEEEcCCCCceeecCCcccccccce-EEE-ECC-EEEEECCccCCCccceEEEEcCCC-----------------Cc
Confidence 56778876521 01111111111111 222 244 6778888776 367788776 12
Q ss_pred cccccccccccceeeEEEeCCCCCcEEEEeecCCe
Q 019059 304 NSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGR 338 (346)
Q Consensus 304 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 338 (346)
+..+.........+....+ ++ .+.+.|+.|+.
T Consensus 503 W~~v~~m~~~rs~~g~~~~--~~-~ly~vGG~~~~ 534 (571)
T KOG4441|consen 503 WTMVAPMTSPRSAVGVVVL--GG-KLYAVGGFDGN 534 (571)
T ss_pred eeEcccCccccccccEEEE--CC-EEEEEecccCc
Confidence 3333333333333333333 23 47888888875
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.53 E-value=0.27 Score=38.45 Aligned_cols=144 Identities=11% Similarity=0.096 Sum_probs=85.5
Q ss_pred eeeEEEEeCCCCCcEEEEecC---------CeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEE
Q 019059 169 HYLSGGAWDPHDVNAVAATCE---------SSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWD 237 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d 237 (346)
.+.+.-..+|+|++..-.-.| |.++.|-... + +..+...- -+.++|+.+.+.+.++-+.+-.|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 356777889999984332222 4455554332 1 12222111 678999988876667777777887787
Q ss_pred cccCC------cceeeecC---CC-cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccc
Q 019059 238 LRMLK------APIQELPG---HT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLL 307 (346)
Q Consensus 238 ~~~~~------~~~~~~~~---~~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (346)
..... +.+..++. .. ...-.++....| .+.++.-..++|...|..+ ++.+
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~t-------------------GK~L 246 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTT-------------------GKIL 246 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCC-------------------CcEE
Confidence 43211 12222221 01 111234445567 6666666678899999998 8999
Q ss_pred cccccccceeeEEEeCCC-CCcEEEEee
Q 019059 308 NSYSDYEDSVYGLAWSSR-EPWIFASLS 334 (346)
Q Consensus 308 ~~~~~~~~~v~~~~~~~~-~~~~l~s~~ 334 (346)
.++.-....|++.+|-.- -..+.+++.
T Consensus 247 ~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 247 LEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred EEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 888887888999999643 222444443
No 395
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.39 E-value=0.72 Score=41.67 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=60.5
Q ss_pred CCeEEEEEcCCCCCCceeeecccCCCc---------------eee-EEEEeCCCCCcEEEEecCC---------------
Q 019059 142 EENIFLWSLDCSNKNAQVQSKQSSGML---------------HYL-SGGAWDPHDVNAVAATCES--------------- 190 (346)
Q Consensus 142 d~~i~vwd~~~~~~~~~~~~~~~~~~~---------------~~v-~~~~~~~~~~~l~~~~~d~--------------- 190 (346)
++.+.-+|..+++...+.......... ..+ ...++.+.+..+++++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 578888999888766655432110000 000 1234444556677776554
Q ss_pred ---eEEEEEccCCCccceeeccc--eeE------EEeC----CCCC--cEEEEecCCCeEEEEEcccCCcceee
Q 019059 191 ---SVQFWDLRSMGKTNSIEHAH--VRN------VDYD----TKKK--HLLVTAADESGIHLWDLRMLKAPIQE 247 (346)
Q Consensus 191 ---~i~i~d~~~~~~~~~~~~~~--v~~------~~~~----~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~ 247 (346)
.|.-+|..+++..-.+...+ ... ..+. -++. .+++.++.+|.+..+|.++ .+++-.
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t-G~~~W~ 326 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT-GKLISA 326 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC-CcEeeE
Confidence 79999999998776654221 110 0110 1221 2577788899999999988 444433
No 396
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.35 E-value=0.75 Score=41.54 Aligned_cols=133 Identities=13% Similarity=0.064 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCCceeeecccC-----CCce-eeEEEEeCCCCC---cEEEEecCCeEEEEEccCCCccceeeccceeEE
Q 019059 144 NIFLWSLDCSNKNAQVQSKQSS-----GMLH-YLSGGAWDPHDV---NAVAATCESSVQFWDLRSMGKTNSIEHAHVRNV 214 (346)
Q Consensus 144 ~i~vwd~~~~~~~~~~~~~~~~-----~~~~-~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~v~~~ 214 (346)
.|.-+|+.+++...+....... .... .+..+. .-++. .+++++.+|.+...|.++++.+-..... ...+
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~ 334 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPM 334 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-cccc
Confidence 7888899888876665432211 0000 111111 01232 4677778999999999999987665421 1223
Q ss_pred EeCCCCCcEEEEe-----------------cCCCeEEEEEcccCCcceeeecCC--C------cce--EEEEeCCCCCcE
Q 019059 215 DYDTKKKHLLVTA-----------------ADESGIHLWDLRMLKAPIQELPGH--T------HWT--WAVCCNPEYDGF 267 (346)
Q Consensus 215 ~~~~~~~~~l~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~~--~------~~v--~~v~~~~~~~~~ 267 (346)
+.+| +. +++.. ..+|.+.-.|+.+.+ .+-+.... . .+. ..+.. .+ .+
T Consensus 335 ~~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~-~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~ 408 (488)
T cd00216 335 AYDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK-VVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NL 408 (488)
T ss_pred ccCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEeCCCCc-EeeEeeCCccccccccCCcccCcceEe--cC-Ce
Confidence 3444 22 22211 235677777777633 33222211 0 111 11222 34 67
Q ss_pred EEEecCCCeEEEEecCC
Q 019059 268 ILSAGTDSTVNLWLVST 284 (346)
Q Consensus 268 l~s~~~d~~i~iwd~~~ 284 (346)
|+.++.||.|+.+|..+
T Consensus 409 v~~g~~dG~l~ald~~t 425 (488)
T cd00216 409 VFAGAADGYFRAFDATT 425 (488)
T ss_pred EEEECCCCeEEEEECCC
Confidence 88888999999999998
No 397
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.21 E-value=0.56 Score=38.66 Aligned_cols=144 Identities=11% Similarity=0.134 Sum_probs=80.5
Q ss_pred CCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCC
Q 019059 76 FDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNK 155 (346)
Q Consensus 76 ~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~ 155 (346)
.++.|+.++ ++| +.++++.. ........ +...|..+...++-+. +++-+ |+.+.++++..-..
T Consensus 6 ~~~~L~vGt----~~G-l~~~~~~~--------~~~~~~i~--~~~~I~ql~vl~~~~~-llvLs-d~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 6 WGDRLLVGT----EDG-LYVYDLSD--------PSKPTRIL--KLSSITQLSVLPELNL-LLVLS-DGQLYVYDLDSLEP 68 (275)
T ss_pred CCCEEEEEE----CCC-EEEEEecC--------CccceeEe--ecceEEEEEEecccCE-EEEEc-CCccEEEEchhhcc
Confidence 466777753 566 88888731 22222222 2233999999988774 33333 69999999885443
Q ss_pred Cceeee----c-----ccCCCceeeEEEE--eCCCCCcEEEEecCCeEEEEEccCC-----Cccceeeccc-eeEEEeCC
Q 019059 156 NAQVQS----K-----QSSGMLHYLSGGA--WDPHDVNAVAATCESSVQFWDLRSM-----GKTNSIEHAH-VRNVDYDT 218 (346)
Q Consensus 156 ~~~~~~----~-----~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~-v~~~~~~~ 218 (346)
...... . ........+..++ -...+...++......|.+|..... +..+.+.... +.+++|.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~ 148 (275)
T PF00780_consen 69 VSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG 148 (275)
T ss_pred ccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC
Confidence 321100 0 0011112333333 1223444445555668888887753 3344454444 99999983
Q ss_pred CCCcEEEEecCCCeEEEEEccc
Q 019059 219 KKKHLLVTAADESGIHLWDLRM 240 (346)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~ 240 (346)
+ .++.|.. ....+.|+.+
T Consensus 149 --~-~i~v~~~-~~f~~idl~~ 166 (275)
T PF00780_consen 149 --N-KICVGTS-KGFYLIDLNT 166 (275)
T ss_pred --C-EEEEEeC-CceEEEecCC
Confidence 3 5666654 3577888885
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.13 E-value=0.55 Score=37.86 Aligned_cols=183 Identities=10% Similarity=0.006 Sum_probs=100.1
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccC-CceEEEEeecCCCCcEEEEecCCeE
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENI 145 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~i 145 (346)
--..+.|..++..+-+++ --....|+.+|++ +++......-.. ----.++.. +..++..+=.++..
T Consensus 46 FTQGL~~~~~g~LyESTG--~yG~S~l~~~d~~---------tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTG--LYGQSSLRKVDLE---------TGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEEEETTEEEEEEC--STTEEEEEEEETT---------TSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEE
T ss_pred cCccEEecCCCEEEEeCC--CCCcEEEEEEECC---------CCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeE
Confidence 345788866666666652 1123478999988 555544332211 111233333 33355566568999
Q ss_pred EEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeecc---c----eeEEEeCC
Q 019059 146 FLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHA---H----VRNVDYDT 218 (346)
Q Consensus 146 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~----v~~~~~~~ 218 (346)
.+||..+-+....+.-. ..=.+++ .++..|+.+.....|+++|..+.+..+.+.-. . ++.+.|.
T Consensus 113 f~yd~~tl~~~~~~~y~------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYP------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp EEEETTTTEEEEEEE-S------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred EEEccccceEEEEEecC------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 99999865443333221 1445555 46788888888889999999887766555411 1 6777775
Q ss_pred CCCcEEEEecCCCeEEEEEcccCCcceeeec---------------CCCcceEEEEeCCCCCcEEEEecC
Q 019059 219 KKKHLLVTAADESGIHLWDLRMLKAPIQELP---------------GHTHWTWAVCCNPEYDGFILSAGT 273 (346)
Q Consensus 219 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~~v~~v~~~~~~~~~l~s~~~ 273 (346)
+|. +.|=.=....|...|..+ +..+..+. ....-.+.|++.|...++++||=.
T Consensus 184 ~G~-IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 NGK-IYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cCE-EEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 343 444333444555555554 22222110 113457899999988677777743
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.064 Score=51.09 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=78.2
Q ss_pred eeEEEEeCCCCCcEEEEe--cCCeEEEEEccCCCccce-----e-------eccc-eeEEEeCCCCCcEEEEecCCCeEE
Q 019059 170 YLSGGAWDPHDVNAVAAT--CESSVQFWDLRSMGKTNS-----I-------EHAH-VRNVDYDTKKKHLLVTAADESGIH 234 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~-----~-------~~~~-v~~~~~~~~~~~~l~~~~~dg~i~ 234 (346)
.+..+...+|+...++.. ++-.|..||++.-..... + ..+. ..++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 445555666765544443 345889999985432210 1 1111 788999998775677788899999
Q ss_pred EEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 235 LWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 235 i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+..+......+..+. .....++++|+|.| ..++.|-..|++.-|....
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeeccc
Confidence 988776444444433 45678999999999 9999999999998886654
No 400
>PHA02713 hypothetical protein; Provisional
Probab=95.87 E-value=0.54 Score=43.18 Aligned_cols=182 Identities=5% Similarity=-0.029 Sum_probs=85.1
Q ss_pred CcEEEEecC------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCC-----eEEEEEccCCCc
Q 019059 134 HDKLVSIDE------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCES-----SVQFWDLRSMGK 202 (346)
Q Consensus 134 ~~~~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~ 202 (346)
.++++||.+ ..+..||..++. ..... ...........+.. ++...+.||.++ .+..||..+.+-
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~-~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKI--HVELP-PMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCe--EeeCC-CCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 366777643 347788877543 11111 11111112222222 466666666543 488899887642
Q ss_pred c--ceeeccc--eeEEEeCCCCCcEEEEecCCC-----------------------eEEEEEcccCC-cceeeecCCCcc
Q 019059 203 T--NSIEHAH--VRNVDYDTKKKHLLVTAADES-----------------------GIHLWDLRMLK-APIQELPGHTHW 254 (346)
Q Consensus 203 ~--~~~~~~~--v~~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~-~~~~~~~~~~~~ 254 (346)
. ..+..+. ...+++ ++. +++.|+.++ .+..||.++.. ..+..+......
T Consensus 380 ~~~~~mp~~r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~ 456 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR 456 (557)
T ss_pred EECCCCCcccccccEEEE--CCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc
Confidence 2 1222111 222222 454 777777542 46677776421 011111111111
Q ss_pred eEEEEeCCCCCcEEEEecCC------CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCc
Q 019059 255 TWAVCCNPEYDGFILSAGTD------STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPW 328 (346)
Q Consensus 255 v~~v~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 328 (346)
. +++ .-++ .+.+.|+.+ ..+..||..+. ..+..+..+.........+.+ ++ .
T Consensus 457 ~-~~~-~~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~----------------~~W~~~~~m~~~r~~~~~~~~--~~-~ 514 (557)
T PHA02713 457 P-GVV-SHKD-DIYVVCDIKDEKNVKTCIFRYNTNTY----------------NGWELITTTESRLSALHTILH--DN-T 514 (557)
T ss_pred C-cEE-EECC-EEEEEeCCCCCCccceeEEEecCCCC----------------CCeeEccccCcccccceeEEE--CC-E
Confidence 1 111 2234 555666654 23566776640 014444444433333333333 34 4
Q ss_pred EEEEeecCC--eEEEeeec
Q 019059 329 IFASLSYDG--RVRNHMLE 345 (346)
Q Consensus 329 ~l~s~~~d~--~v~vw~~~ 345 (346)
+.+.||.|+ .+..||++
T Consensus 515 iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 515 IMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EEEEeeecceeehhhcCcc
Confidence 889999888 66666653
No 401
>PHA02713 hypothetical protein; Provisional
Probab=95.85 E-value=1.1 Score=41.09 Aligned_cols=89 Identities=11% Similarity=-0.016 Sum_probs=46.9
Q ss_pred eEEEEEccCCCc--cceeeccc-eeEEEeCCCCCcEEEEecCC------CeEEEEEccc-C-CcceeeecCCCcceEEEE
Q 019059 191 SVQFWDLRSMGK--TNSIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRM-L-KAPIQELPGHTHWTWAVC 259 (346)
Q Consensus 191 ~i~i~d~~~~~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~-~~~~~~~~~~~~~v~~v~ 259 (346)
.+..||..+.+- +..+..+. -.+++. -++. +.+.|+.+ ..+..||..+ . -..+..+.........+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEE-ECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 477788877642 22222222 112222 2354 77777654 2467888875 1 122223322222222222
Q ss_pred eCCCCCcEEEEecCCC--eEEEEecCC
Q 019059 260 CNPEYDGFILSAGTDS--TVNLWLVST 284 (346)
Q Consensus 260 ~~~~~~~~l~s~~~d~--~i~iwd~~~ 284 (346)
+ ++ .+.++|+.|+ ++..||..+
T Consensus 511 ~--~~-~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 511 H--DN-TIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred E--CC-EEEEEeeecceeehhhcCccc
Confidence 2 55 7888999888 777888877
No 402
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.80 E-value=0.23 Score=43.40 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=88.7
Q ss_pred CCCcEEEEe-cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCc------EEEEecCCCeEEEEEcccCCcceeeecC
Q 019059 179 HDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKH------LLVTAADESGIHLWDLRMLKAPIQELPG 250 (346)
Q Consensus 179 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 250 (346)
+...++..+ ....++-.|+..|+.+....... + -+.|.|...+ --++|-.+..|.-.|.|-.+..+.....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 334444333 45678888888888888777444 5 6777775431 1234556667777787754433332221
Q ss_pred ----CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC
Q 019059 251 ----HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE 326 (346)
Q Consensus 251 ----~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 326 (346)
.....++..-... .++|.+|..|-|++||.-. ......+++-...|..+..+.+|
T Consensus 557 KdY~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig-------------------~rAKtalP~lG~aIk~idvta~G 615 (776)
T COG5167 557 KDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIG-------------------KRAKTALPGLGDAIKHIDVTANG 615 (776)
T ss_pred hhccccccccccccccC--ceEEEecCCCceeeehhhc-------------------chhhhcCcccccceeeeEeecCC
Confidence 1222333333333 5899999999999999764 34444566667789999999999
Q ss_pred CcEEEEeecCCeEEEeee
Q 019059 327 PWIFASLSYDGRVRNHML 344 (346)
Q Consensus 327 ~~~l~s~~~d~~v~vw~~ 344 (346)
+++|++|- ..+.+-|+
T Consensus 616 k~ilaTCk--~yllL~d~ 631 (776)
T COG5167 616 KHILATCK--NYLLLTDV 631 (776)
T ss_pred cEEEEeec--ceEEEEec
Confidence 97777764 34554443
No 403
>PRK10115 protease 2; Provisional
Probab=95.75 E-value=1.9 Score=40.86 Aligned_cols=246 Identities=9% Similarity=-0.005 Sum_probs=117.5
Q ss_pred eeeccCCCCcceEEEeecccCC-CCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecC--CcceEEE
Q 019059 19 ISDVKADTDHTSFLTGTLSLKE-ENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTG--ESYGAAI 95 (346)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~--~d~~i~v 95 (346)
+....+++++..++.+....+. ...+++.++.... .....+.+ .-..++|+++++.++.+..... ....|..
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 4445567777777777544333 3456667665421 11111111 1146999999988887653211 2246777
Q ss_pred EecCcccCCCCCccceeeeeeeccCCceE-EEEeecCCCCcEEEEe--cCCeEEEEEcCCCC-CCceeeecccCCCceee
Q 019059 96 WQIPELYGQLNSPQLERIAALDAHVGKIN-CVLWWSSGRHDKLVSI--DEENIFLWSLDCSN-KNAQVQSKQSSGMLHYL 171 (346)
Q Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~--~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~v 171 (346)
+++.. +..+....+........ .+..+.+++++++.+. .++.+.+++..... ......... .+ ..
T Consensus 204 h~lgt-------~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~---~~ 272 (686)
T PRK10115 204 HTIGT-------PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR-KD---HE 272 (686)
T ss_pred EECCC-------ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC-CC---CE
Confidence 77762 11122222332223333 2333447887665552 35789999854321 112222211 11 11
Q ss_pred EEEEeCCCCCcEEEEec----CCeEEEEEccCCCccceeecc--c--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCc
Q 019059 172 SGGAWDPHDVNAVAATC----ESSVQFWDLRSMGKTNSIEHA--H--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKA 243 (346)
Q Consensus 172 ~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~--~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 243 (346)
..+. +. +..++..++ ...|...++........+... . +..+.+..+ .++++...++.-+++-+.....
T Consensus 273 ~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~~~~~ 348 (686)
T PRK10115 273 YSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD--WLVVEERQRGLTSLRQINRKTR 348 (686)
T ss_pred EEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEcCCCC
Confidence 2222 22 233444332 224544555522222222222 2 888888733 4788888788766554442222
Q ss_pred ceeeec-CCCcceEEEEeC--CCCCcEEEEecC---CCeEEEEecCC
Q 019059 244 PIQELP-GHTHWTWAVCCN--PEYDGFILSAGT---DSTVNLWLVST 284 (346)
Q Consensus 244 ~~~~~~-~~~~~v~~v~~~--~~~~~~l~s~~~---d~~i~iwd~~~ 284 (346)
.+..+. .....+..+.++ +++..++++.+. -+.+..+|+.+
T Consensus 349 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~ 395 (686)
T PRK10115 349 EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT 395 (686)
T ss_pred ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence 334333 222233333444 444245544443 35777888765
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.67 E-value=0.5 Score=43.29 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=66.7
Q ss_pred eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceee-ecCCCcceEEEEeC--CCCCcEEEEecCCCeEEEEecCCCCC
Q 019059 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQE-LPGHTHWTWAVCCN--PEYDGFILSAGTDSTVNLWLVSTSNH 287 (346)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~v~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~ 287 (346)
+.-+.-+.-++ ..++-+....+.|||.+... .... -......|..+.|. |++ +.+.+.|....|.+|-......
T Consensus 32 ~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~-lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 32 PSLISGSSIKK-IAVVDSSRSELTIWDTRSGV-LEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred cceEeecccCc-EEEEECCCCEEEEEEcCCcE-EEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhh
Confidence 33344444454 44444445689999998632 1111 11346789999885 677 7788888889999986543100
Q ss_pred CCCCcccccCCcccccccccccc--cccc-ceeeEEEeCCCCCcEEEEeecCCeEEEee
Q 019059 288 DELPSESLVESPNQRANSLLNSY--SDYE-DSVYGLAWSSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~d~~v~vw~ 343 (346)
. ...| ...++..+ ..|+ .+|.+..|.++|. ++ .++ ++.+.|++
T Consensus 109 ~-------~~~p---~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~d 154 (631)
T PF12234_consen 109 T-------NKGP---SWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFD 154 (631)
T ss_pred h-------cCCc---ccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEEC
Confidence 0 0001 12222222 2233 4699999999985 44 333 45677765
No 405
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=1.3 Score=38.34 Aligned_cols=155 Identities=12% Similarity=0.118 Sum_probs=86.4
Q ss_pred EEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEE
Q 019059 69 WDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLW 148 (346)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vw 148 (346)
+.+-|...++.++++. .|.+.=|...... +..++..-....++|.++.|++|++ ++++--.+..|.++
T Consensus 26 ngvFfDDaNkqlfavr-----Sggatgvvvkgpn------dDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~ 93 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVR-----SGGATGVVVKGPN------DDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFC 93 (657)
T ss_pred cceeeccCcceEEEEe-----cCCeeEEEEeCCC------CCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEE
Confidence 4455555566666653 3344555554111 1122222234567999999999998 34444679999999
Q ss_pred EcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCc-cceeeccc---eeEEEeCCCCCcEE
Q 019059 149 SLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGK-TNSIEHAH---VRNVDYDTKKKHLL 224 (346)
Q Consensus 149 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~---v~~~~~~~~~~~~l 224 (346)
+....+...... .........|.+..|... ..++.....| +.+|.....+. ++..+ .+ |+-..|.++....+
T Consensus 94 nf~~d~~~l~~~-~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk-s~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 94 NFIPDNSQLEYT-QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK-SHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred ecCCCchhhHHH-HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh-hcccCccEEEEccccceEe
Confidence 985443222222 222222346899999864 5566665444 66666554332 22222 33 88888888887444
Q ss_pred EEec-CCCeEEEEEcc
Q 019059 225 VTAA-DESGIHLWDLR 239 (346)
Q Consensus 225 ~~~~-~dg~i~i~d~~ 239 (346)
++.+ ..+.+.=+.++
T Consensus 170 L~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 170 LSTTVLENVLNPFHFR 185 (657)
T ss_pred eeccccccccccEEEe
Confidence 4444 33343333333
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.49 E-value=0.76 Score=39.76 Aligned_cols=143 Identities=11% Similarity=0.077 Sum_probs=75.2
Q ss_pred CceEEEEeecCCCCcEEEEe-----------cCC-eEEEEEcCCC-CCCc--eeeecccCCCceeeEEEEeCCCCCcEEE
Q 019059 121 GKINCVLWWSSGRHDKLVSI-----------DEE-NIFLWSLDCS-NKNA--QVQSKQSSGMLHYLSGGAWDPHDVNAVA 185 (346)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~-----------~d~-~i~vwd~~~~-~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 185 (346)
.....|+|.++|+ ++++.. ..+ .|.+++-..+ .... +..... .....++++.+++ +++
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~----l~~p~Gi~~~~~G--lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE----LSMVTGLAVAVGG--VYV 86 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----CCCccceeEecCC--EEE
Confidence 3457889999998 344432 123 6777764322 1111 122111 2245788998877 555
Q ss_pred EecCCeEEEEEccCC-----Cc--c-ceeec-----cc-eeEEEeCCCCCcEEEEecCC-------------------Ce
Q 019059 186 ATCESSVQFWDLRSM-----GK--T-NSIEH-----AH-VRNVDYDTKKKHLLVTAADE-------------------SG 232 (346)
Q Consensus 186 ~~~d~~i~i~d~~~~-----~~--~-~~~~~-----~~-v~~~~~~~~~~~~l~~~~~d-------------------g~ 232 (346)
+......++.|.... +. + ..+.. .| ...++|.|+|. +.++-+.. |.
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCce
Confidence 554443334454321 11 1 11211 23 88999999997 55543311 33
Q ss_pred EEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCC
Q 019059 233 IHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD 274 (346)
Q Consensus 233 i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d 274 (346)
|.-+|... ..+..+...-.....++|+|+| .++++-..+
T Consensus 166 i~r~~pdg--~~~e~~a~G~rnp~Gl~~d~~G-~l~~tdn~~ 204 (367)
T TIGR02604 166 LFRYNPDG--GKLRVVAHGFQNPYGHSVDSWG-DVFFCDNDD 204 (367)
T ss_pred EEEEecCC--CeEEEEecCcCCCccceECCCC-CEEEEccCC
Confidence 44444442 2233333223445789999999 777664433
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.43 E-value=1.6 Score=38.06 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=34.5
Q ss_pred cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc
Q 019059 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED 315 (346)
Q Consensus 253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (346)
..+.++..+|.+ .+.|+...=|.|.++|+.. +..+..++|..+
T Consensus 308 R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~-------------------~~vvrmWKGYRd 350 (415)
T PF14655_consen 308 REGESICLSPSG-RLAAVTDSLGRVLLIDVAR-------------------GIVVRMWKGYRD 350 (415)
T ss_pred ceEEEEEECCCC-CEEEEEcCCCcEEEEECCC-------------------ChhhhhhccCcc
Confidence 446789999998 8888887778999999998 666776666543
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.42 E-value=0.63 Score=42.69 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=63.8
Q ss_pred eCCCCCcEEEEecCCeEEEEEccCCCccceeec--cc-eeEEEeC--CCCCcEEEEecCCCeEEEEEcc-----cCC---
Q 019059 176 WDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AH-VRNVDYD--TKKKHLLVTAADESGIHLWDLR-----MLK--- 242 (346)
Q Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~-v~~~~~~--~~~~~~l~~~~~dg~i~i~d~~-----~~~--- 242 (346)
-+.-++..++-.....+.|||.+.+........ .. |.++.|. |++. .+++.+....|.++--. +..
T Consensus 37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDYTNKGPSW 115 (631)
T ss_pred ecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhhhcCCccc
Confidence 333344333434456899999998874433221 22 9999985 7787 45555566788887532 111
Q ss_pred cceeee--cCCC-cceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 243 APIQEL--PGHT-HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 243 ~~~~~~--~~~~-~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.+++.+ ..|+ .+|.+..|.++| .+++.+ .+++.|+|-..
T Consensus 116 ~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 116 APIRKIDISSHTPHPIGDSIWLKDG-TLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred ceeEEEEeecCCCCCccceeEecCC-eEEEEe--CCEEEEECCCc
Confidence 133332 2344 678999999999 544443 35788987654
No 409
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.87 Score=35.07 Aligned_cols=163 Identities=13% Similarity=0.163 Sum_probs=85.7
Q ss_pred ceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCcee
Q 019059 91 YGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHY 170 (346)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 170 (346)
..|++||+. .++.+.+-+-....+..=-...-+.++...+-.++.-..+|.++-+......-. + .
T Consensus 68 S~ir~~~L~---------~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---G---e 132 (262)
T COG3823 68 SKIRVSDLT---------TGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---G---E 132 (262)
T ss_pred ceeEEEecc---------CceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC---C---c
Confidence 379999998 455554433222233332233334544555556888888998865543333221 1 3
Q ss_pred eEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee---ccc----eeEEEeCCCCCcEEEEec----------CCCeE
Q 019059 171 LSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE---HAH----VRNVDYDTKKKHLLVTAA----------DESGI 233 (346)
Q Consensus 171 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~----v~~~~~~~~~~~~l~~~~----------~dg~i 233 (346)
-.+++ .|+..|+.+....+++.-|.++-....++. .+. ++.+.|- +|. +++-.= ..|.|
T Consensus 133 GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 133 GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEcCCCCcE
Confidence 33333 467778888777788888877655443332 111 4444443 232 332221 22333
Q ss_pred EEE-EcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec
Q 019059 234 HLW-DLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG 272 (346)
Q Consensus 234 ~i~-d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~ 272 (346)
.-| |+......+..-..|..-.+.+++.|++.+++++|-
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 222 333211122222335566788999999866777764
No 410
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=2.3 Score=39.37 Aligned_cols=177 Identities=8% Similarity=0.051 Sum_probs=91.7
Q ss_pred cceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCce
Q 019059 90 SYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLH 169 (346)
Q Consensus 90 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 169 (346)
-..|+|+++. ++++..+.-....+-.+.|+.+.. +++-..+|.+++|++-... .... .........
T Consensus 63 ~~~I~If~~s----------G~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~-ie~~-svg~e~~~~ 128 (829)
T KOG2280|consen 63 RPYIRIFNIS----------GQLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLLGEF-IESN-SVGFESQMS 128 (829)
T ss_pred ceeEEEEecc----------ccchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecchhh-hccc-ccccccccC
Confidence 3468888875 666666655555889999999888 6666789999999986432 1111 111111222
Q ss_pred eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec-c-c---eeEEEeCCCCC--cEEEEec-CCCeEEEEEcccC
Q 019059 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH-A-H---VRNVDYDTKKK--HLLVTAA-DESGIHLWDLRML 241 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~-~---v~~~~~~~~~~--~~l~~~~-~dg~i~i~d~~~~ 241 (346)
.|..+.+..+| +++-..+|.+.+-.-........+.. + . ..|-...+++. ..++-.. ..+ ..++.....
T Consensus 129 ~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~ 205 (829)
T KOG2280|consen 129 DIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES 205 (829)
T ss_pred ceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc
Confidence 45555554444 33333445554432222212222221 1 1 12222222211 1111111 111 122222221
Q ss_pred CcceeeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 242 KAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 242 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
......+......+..+..||+. .+|+--..+|.|.+-+...
T Consensus 206 ~~q~~~~~~~~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 206 RVQLHALSWPNSSVVKISVSPNR-RFLALYTETGKIWVVSIDL 247 (829)
T ss_pred cccccccCCCCceEEEEEEcCCc-ceEEEEecCCcEEEEecch
Confidence 22223333333567788899999 9999999999998887776
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.25 E-value=1.7 Score=37.57 Aligned_cols=151 Identities=9% Similarity=0.034 Sum_probs=75.5
Q ss_pred ceEEeeecCCCCceEEEEee-----c--CCcc-eEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEE
Q 019059 67 EIWDLSSCPFDQRIFSTVFS-----T--GESY-GAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLV 138 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~-----~--~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 138 (346)
....|+|.++|+.+++...+ + ...+ .|.+++-.... ........+...-.....+++.+++ ++++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd-----G~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~ 87 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD-----GKYDKSNVFAEELSMVTGLAVAVGG--VYVA 87 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC-----CCcceeEEeecCCCCccceeEecCC--EEEe
Confidence 45678888888766553100 0 0112 45555432100 0111222332333345788888887 3444
Q ss_pred EecCCeEEEE-EcCCCC----CCceeeecccCC---CceeeEEEEeCCCCCcEEEEecC-------------------Ce
Q 019059 139 SIDEENIFLW-SLDCSN----KNAQVQSKQSSG---MLHYLSGGAWDPHDVNAVAATCE-------------------SS 191 (346)
Q Consensus 139 ~~~d~~i~vw-d~~~~~----~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-------------------~~ 191 (346)
. . ..|..+ |.+... ....+....... +......++|.|||...++.+.. +.
T Consensus 88 ~-~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 88 T-P-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred C-C-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 3 3 344434 443221 111222111111 23457889999998766655421 34
Q ss_pred EEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEec
Q 019059 192 VQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAA 228 (346)
Q Consensus 192 i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~ 228 (346)
|.-+|..+++ ...+..+. ...++|+|++. ++++-.
T Consensus 166 i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 166 LFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred EEEEecCCCe-EEEEecCcCCCccceECCCCC-EEEEcc
Confidence 5555555443 22333333 78999999997 666544
No 412
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.4 Score=42.14 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=50.6
Q ss_pred ceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccc--cccccccccccccceeeEEEeCCCC--CcE
Q 019059 254 WTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQ--RANSLLNSYSDYEDSVYGLAWSSRE--PWI 329 (346)
Q Consensus 254 ~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~--~~~ 329 (346)
.|..+..++.| ..++-.|.+|.+.++=.+.........+.......+ .-+..+++-..| -.+..++|+|+. ...
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~-ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTS-LTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCc-eeeeeccccCCccCCce
Confidence 46778889999 888888888855443322211111000000000000 112223322222 247889999976 346
Q ss_pred EEEeecCCeEEEeeecC
Q 019059 330 FASLSYDGRVRNHMLEK 346 (346)
Q Consensus 330 l~s~~~d~~v~vw~~~~ 346 (346)
|..-+.|..+|+|++.+
T Consensus 183 L~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEEecCcEEEEEecCC
Confidence 77778899999999864
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.92 E-value=1.7 Score=35.39 Aligned_cols=145 Identities=10% Similarity=0.074 Sum_probs=83.9
Q ss_pred ceEEEEeecCCCCcEEEEecC--CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEE-cc
Q 019059 122 KINCVLWWSSGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWD-LR 198 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d-~~ 198 (346)
.+...+++++++.+.++...+ ..++++... ......... ..+..-.|++++...++...+...+++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g------~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG------GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC------CccccccccCCCCEEEEEcCCCceEEEEecC
Confidence 688999999999655555223 445555433 333332211 1677779999977666655566666663 33
Q ss_pred CCCcc-ceee---cc-ceeEEEeCCCCCcEEEEe--cCCCeEEEEEcccCC--------cceeeecCCCcceEEEEeCCC
Q 019059 199 SMGKT-NSIE---HA-HVRNVDYDTKKKHLLVTA--ADESGIHLWDLRMLK--------APIQELPGHTHWTWAVCCNPE 263 (346)
Q Consensus 199 ~~~~~-~~~~---~~-~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~--------~~~~~~~~~~~~v~~v~~~~~ 263 (346)
.++.. ..+. .. .|..+.++|||..+.+.. ..++.|.+--+.... .+..........+..+.|.++
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 33321 1111 11 399999999998443333 234677766544211 122222233567899999999
Q ss_pred CCcEEEEecCCC
Q 019059 264 YDGFILSAGTDS 275 (346)
Q Consensus 264 ~~~~l~s~~~d~ 275 (346)
+ .+++.+...+
T Consensus 177 ~-~L~V~~~~~~ 187 (253)
T PF10647_consen 177 S-TLVVLGRSAG 187 (253)
T ss_pred C-EEEEEeCCCC
Confidence 9 6666555433
No 414
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.92 E-value=0.16 Score=27.99 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=25.1
Q ss_pred CceEEEEeecCCC--CcEEEEecCCeEEEEEcCC
Q 019059 121 GKINCVLWWSSGR--HDKLVSIDEENIFLWSLDC 152 (346)
Q Consensus 121 ~~i~~~~~~~~~~--~~~~~~~~d~~i~vwd~~~ 152 (346)
+.|.++.|+|... .+++.+-..+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999997654 5666666679999999985
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=0.22 Score=47.74 Aligned_cols=151 Identities=9% Similarity=0.005 Sum_probs=90.9
Q ss_pred cceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeee---eeccCCceEEEEeecCCCCcEEEEecC
Q 019059 66 NEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAA---LDAHVGKINCVLWWSSGRHDKLVSIDE 142 (346)
Q Consensus 66 ~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~d 142 (346)
-.|..+...+|....++.. ..++-.|..+|+.+-..... .+..+++. ......-..++.|+|.=....++...|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~--tsng~~v~~fD~~~fs~s~~-~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d 177 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVS--TSNGEAVYSFDLEEFSESRY-ETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD 177 (1405)
T ss_pred ccceEEEeccCCceEEEEE--ecCCceEEEEehHhhhhhhh-hhccccccccchhccccccccccccCCccchhhhhccc
Confidence 4566666677766655543 34466789999874322110 01122211 112223456888998766545666779
Q ss_pred CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-----ccc-eeEEEe
Q 019059 143 ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-----HAH-VRNVDY 216 (346)
Q Consensus 143 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~-v~~~~~ 216 (346)
+.|++..+......... .......++++|+|.|+.+++|-..|++.-|-..-. ....+. ... |.+|.|
T Consensus 178 lsl~V~~~~~~~~~v~s-----~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTS-----FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred cchhhhhhhhhhhhhcc-----cCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEE
Confidence 99998877633222111 112337899999999999999999999988865432 222221 112 999999
Q ss_pred CCCCCcEEE
Q 019059 217 DTKKKHLLV 225 (346)
Q Consensus 217 ~~~~~~~l~ 225 (346)
-....++++
T Consensus 252 l~t~eflvv 260 (1405)
T KOG3630|consen 252 LSTQEFLVV 260 (1405)
T ss_pred ecceeEEEE
Confidence 887764433
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.74 E-value=0.14 Score=28.16 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=26.6
Q ss_pred cceEEEEeCCCCC--cEEEEecCCCeEEEEecCC
Q 019059 253 HWTWAVCCNPEYD--GFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 253 ~~v~~v~~~~~~~--~~l~s~~~d~~i~iwd~~~ 284 (346)
+.+.++.|+|... .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998763 5888888889999999994
No 417
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.70 E-value=1.7 Score=41.05 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=52.1
Q ss_pred cceEEEEeCCCCCcEEEEecCCCeEEEEecCCC-CCCCCCcccccCCccc--cccccccccccccceeeEEEeCCCC--C
Q 019059 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTS-NHDELPSESLVESPNQ--RANSLLNSYSDYEDSVYGLAWSSRE--P 327 (346)
Q Consensus 253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~--~ 327 (346)
-.|..|.++|+| .+|+..|..| |.|-.+... ...............+ .-+...+ ...+...|..+.|+|.+ .
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCCCC
Confidence 468899999999 8888888765 555555431 0000000000000000 0111111 12345579999999963 2
Q ss_pred cEEEEeecCCeEEEeeec
Q 019059 328 WIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 328 ~~l~s~~~d~~v~vw~~~ 345 (346)
..|+.-..|+++|+||+.
T Consensus 162 ~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CeEEEEecCCEEEEEecC
Confidence 377788889999999985
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.62 E-value=4.2 Score=38.53 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=51.1
Q ss_pred CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCC----------CCCc--eeeec----ccCCCceeeEEEEeCCC---C
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCS----------NKNA--QVQSK----QSSGMLHYLSGGAWDPH---D 180 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~----------~~~~--~~~~~----~~~~~~~~v~~~~~~~~---~ 180 (346)
.-.|..+..+|+|..++++| ...|.|..+... .... +...- ........|..+.|+|. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G--~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVG--PRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCCCEEEEEc--CCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 45789999999999644444 345555555321 1100 00000 01233457889999997 4
Q ss_pred CcEEEEecCCeEEEEEccCCC
Q 019059 181 VNAVAATCESSVQFWDLRSMG 201 (346)
Q Consensus 181 ~~l~~~~~d~~i~i~d~~~~~ 201 (346)
.+|++-..|+.+|+||+...+
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CeEEEEecCCEEEEEecCCCC
Confidence 788888999999999997554
No 419
>PHA03098 kelch-like protein; Provisional
Probab=94.53 E-value=2.7 Score=38.57 Aligned_cols=60 Identities=10% Similarity=0.071 Sum_probs=31.4
Q ss_pred CCCcEEEEecC-----CeEEEEEccCCCccc--eeeccc-eeEEEeCCCCCcEEEEecCC------CeEEEEEccc
Q 019059 179 HDVNAVAATCE-----SSVQFWDLRSMGKTN--SIEHAH-VRNVDYDTKKKHLLVTAADE------SGIHLWDLRM 240 (346)
Q Consensus 179 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~ 240 (346)
++...+.||.+ ..+..||..+.+-.. .+..+. -.+++. -++. +++.|+.+ ..+..||+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNL-IYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCE-EEEECCcCCCCcccceEEEEeCCC
Confidence 45666666643 357788887665221 111111 111222 2344 77777632 3578888775
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.43 E-value=4.4 Score=37.95 Aligned_cols=116 Identities=9% Similarity=0.186 Sum_probs=72.4
Q ss_pred eeEEEeCCC-CCcEEEEecCCCeEEEEEcccCC-------------------cceeeecCCCcceEEEEeC--CCCCcEE
Q 019059 211 VRNVDYDTK-KKHLLVTAADESGIHLWDLRMLK-------------------APIQELPGHTHWTWAVCCN--PEYDGFI 268 (346)
Q Consensus 211 v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~v~~~--~~~~~~l 268 (346)
|+.|....- +..+|+.+.+||.|.+|.++..- +|...+. ....+++++++ ... ++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eEE
Confidence 555544332 22378889999999999653210 0122222 23567889987 666 888
Q ss_pred EEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCC--C---cEEEEeecCCeEEEee
Q 019059 269 LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSRE--P---WIFASLSYDGRVRNHM 343 (346)
Q Consensus 269 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~---~~l~s~~~d~~v~vw~ 343 (346)
|+++....|.||-....... ...... ..|...|-+|+|-++. . ..|++++-.|.+-+|+
T Consensus 181 AVSsNs~~VTVFaf~l~~~r---------------~~~~~s-~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDER---------------FYHVPS-HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEecCCceEEEEEEeccccc---------------cccccc-cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 88888888888866651000 000001 1255568999997754 1 2688889999999887
Q ss_pred e
Q 019059 344 L 344 (346)
Q Consensus 344 ~ 344 (346)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 6
No 421
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=1.4 Score=38.16 Aligned_cols=136 Identities=9% Similarity=0.076 Sum_probs=83.6
Q ss_pred EEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccc
Q 019059 125 CVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTN 204 (346)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 204 (346)
.+-|...++. +++. ..|.+.=|-....+..... .......++|.++.|++|.+.+++--.+..|.+++....+...
T Consensus 27 gvFfDDaNkq-lfav-rSggatgvvvkgpndDVpi--Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 27 GVFFDDANKQ-LFAV-RSGGATGVVVKGPNDDVPI--SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ceeeccCcce-EEEE-ecCCeeEEEEeCCCCCCCc--eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 4445444443 4433 2456666665533311111 1111223389999999999999998899999999985444332
Q ss_pred eeeccc------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEE
Q 019059 205 SIEHAH------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFI 268 (346)
Q Consensus 205 ~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l 268 (346)
.....+ |....|....+ ++.-.. .-+.+|-.......++..+.|...|+--.|+++- +.+
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et-~v~ 168 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTE--IAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET-AVI 168 (657)
T ss_pred HHHHHhccCcceeEEEEEecCee--EEEEec-CCeEEEEEchhhhhhhhhhhcccCccEEEEcccc-ceE
Confidence 222111 89999988765 333333 3466666554455677777888888888898887 443
No 422
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.17 E-value=3.2 Score=35.37 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=34.1
Q ss_pred ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeee--cccCCCceeeEEEEeCCC
Q 019059 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQS--KQSSGMLHYLSGGAWDPH 179 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~ 179 (346)
.-+.|+|.|+|+ ++++-..|.|++++.. +.....+.. .........+..++++|+
T Consensus 3 ~P~~~a~~pdG~--l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGR--LLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSC--EEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCc--EEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccc
Confidence 357899999987 6666669999999933 322112211 112233457899999994
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.98 E-value=4.2 Score=36.05 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=83.9
Q ss_pred cCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCC------cEEEEecCCeEEE
Q 019059 74 CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRH------DKLVSIDEENIFL 147 (346)
Q Consensus 74 ~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~d~~i~v 147 (346)
+-+...|+... |+....+.--|++ .++.+..+..|... -+.|.|..+. --++|-.+..|.-
T Consensus 475 h~~dssli~~d--g~~~~kLykmDIE---------rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFr 541 (776)
T COG5167 475 HDNDSSLIYLD--GGERDKLYKMDIE---------RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFR 541 (776)
T ss_pred ecCCcceEEec--CCCcccceeeecc---------cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEE
Confidence 33344444432 5565666667777 78888888877665 4566665321 1344533666666
Q ss_pred EEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee-ccc-eeEEEeCCCCCcEEE
Q 019059 148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE-HAH-VRNVDYDTKKKHLLV 225 (346)
Q Consensus 148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~-v~~~~~~~~~~~~l~ 225 (346)
.|.+-....................+.. .....++++++..|.|++||.-.......++ .+. |..+..+.+|.++|+
T Consensus 542 IDPR~~gNKi~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 542 IDPRARGNKIKVVESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred ecccccCCceeeeeehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence 6665333211221111111111222222 2245689999999999999965333322222 122 899999999996565
Q ss_pred EecCCCeEEEEEcc
Q 019059 226 TAADESGIHLWDLR 239 (346)
Q Consensus 226 ~~~~dg~i~i~d~~ 239 (346)
++- ..+-+-|++
T Consensus 621 TCk--~yllL~d~~ 632 (776)
T COG5167 621 TCK--NYLLLTDVP 632 (776)
T ss_pred eec--ceEEEEecc
Confidence 543 367777765
No 424
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.93 E-value=1.1 Score=34.07 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=24.1
Q ss_pred eeeEEEeCCC-----CCcEEEEeecCCeEEEeee
Q 019059 316 SVYGLAWSSR-----EPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 316 ~v~~~~~~~~-----~~~~l~s~~~d~~v~vw~~ 344 (346)
.|.+++|||. ++-+|++...++.|.||.-
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 6899999994 3347899999999999964
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=93.84 E-value=3.7 Score=35.00 Aligned_cols=150 Identities=7% Similarity=0.046 Sum_probs=80.7
Q ss_pred CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (346)
...+.++.+.+++. +++.+..|.+..- .+.+......... .....++.+.+.++++.+++ +..|.+++=....
T Consensus 172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s-~~~gg~tW~~~~~---~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGK--YVAVSSRGNFYST-WEPGQTAWTPHQR---NSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCe--EEEEeCCceEEEE-cCCCCCeEEEeeC---CCcccceeeeEcCCCCEEEE-ecCCEEEEccCCC
Confidence 34678888888876 4555556665532 1222222222221 22347899999998876555 4567665323344
Q ss_pred CCccceee-----ccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeec---CCCcceEEEEeCCCCCcEEEE
Q 019059 200 MGKTNSIE-----HAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILS 270 (346)
Q Consensus 200 ~~~~~~~~-----~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~s 270 (346)
+..-.... ... +..+.+.+++. +++++ .+|.+.. .... ...-.... .-....+.+.|..++ ..++
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G-~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~- 318 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGG-GNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPE-KGFV- 318 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCC-EEEEc-CCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCC-ceEE-
Confidence 33212111 112 78899999876 55544 5565542 2222 22222221 122356777777665 5555
Q ss_pred ecCCCeEEEEec
Q 019059 271 AGTDSTVNLWLV 282 (346)
Q Consensus 271 ~~~d~~i~iwd~ 282 (346)
.+..|.|.-|+-
T Consensus 319 ~G~~G~il~~~~ 330 (334)
T PRK13684 319 LGQRGVLLRYVG 330 (334)
T ss_pred ECCCceEEEecC
Confidence 455788877654
No 426
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.80 E-value=5.9 Score=37.14 Aligned_cols=112 Identities=8% Similarity=0.060 Sum_probs=70.9
Q ss_pred eeEEEEeCC--CCCcEEEEecCCeEEEEEccC-------C-------------Cccceeeccc-eeEEEeC--CCCCcEE
Q 019059 170 YLSGGAWDP--HDVNAVAATCESSVQFWDLRS-------M-------------GKTNSIEHAH-VRNVDYD--TKKKHLL 224 (346)
Q Consensus 170 ~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~-------~-------------~~~~~~~~~~-v~~~~~~--~~~~~~l 224 (346)
.|+.+.... ....|+++.+||.|.+|.+++ . ++...+..+. +.+++++ ...+ ++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EE
Confidence 455554432 345677888999999997631 0 0111122222 8899998 6666 88
Q ss_pred EEecCCCeEEEEEcccC--CcceeeecCCCcceEEEEeCCCC--Cc---EEEEecCCCeEEEEec
Q 019059 225 VTAADESGIHLWDLRML--KAPIQELPGHTHWTWAVCCNPEY--DG---FILSAGTDSTVNLWLV 282 (346)
Q Consensus 225 ~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~v~~~~~~--~~---~l~s~~~d~~i~iwd~ 282 (346)
|+++....|.||-.... +.....-..|...|-+|+|-++. +. .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888865531 11111111356778888887654 12 7888889999999888
No 427
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.80 E-value=0.021 Score=49.15 Aligned_cols=145 Identities=12% Similarity=0.128 Sum_probs=97.5
Q ss_pred eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEE
Q 019059 68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFL 147 (346)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~v 147 (346)
.....|-|.+..++.+ +.+..+..||-. ++..... ..++....++|.-++..+++.+-..+.+.+
T Consensus 37 pi~~~w~~e~~nlava----ca~tiv~~YD~a----------gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piyl 101 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVA----CANTIVIYYDKA----------GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYL 101 (615)
T ss_pred cceeeEecCCCceehh----hhhhHHHhhhhh----------cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeee
Confidence 3345788888887775 477788888854 2333333 335566788999898876777777899999
Q ss_pred EEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCCCcEE
Q 019059 148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKKKHLL 224 (346)
Q Consensus 148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~~~~l 224 (346)
||+.+.. ..++... ..+ .-.-+.|++-...++.+...+.+.++...+.+...... .| +.++++.+.+. .
T Consensus 102 wd~n~ey-tqqLE~g--g~~--s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~--v 173 (615)
T KOG2247|consen 102 WDVNSEY-TQQLESG--GTS--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY--V 173 (615)
T ss_pred chhhhhh-HHHHhcc--Ccc--hHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce--e
Confidence 9998543 1222111 112 22226889888888888889999999988776554443 13 99999999884 5
Q ss_pred EEecCCCeEEE
Q 019059 225 VTAADESGIHL 235 (346)
Q Consensus 225 ~~~~~dg~i~i 235 (346)
+.++.|..+.+
T Consensus 174 il~dcd~~L~v 184 (615)
T KOG2247|consen 174 ILCDCDNTLSV 184 (615)
T ss_pred eecCcHHHHHH
Confidence 55555555443
No 428
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=93.46 E-value=0.3 Score=26.25 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=21.9
Q ss_pred ccCCceEEEEeecCCCCcEEEEecC--CeEEEE
Q 019059 118 AHVGKINCVLWWSSGRHDKLVSIDE--ENIFLW 148 (346)
Q Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~d--~~i~vw 148 (346)
.....-....|+|||+++++++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4455677889999999888887666 666665
No 429
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=2.4 Score=41.79 Aligned_cols=163 Identities=9% Similarity=0.150 Sum_probs=91.8
Q ss_pred eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEE--------EeCCCCCc
Q 019059 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGG--------AWDPHDVN 182 (346)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~ 182 (346)
+.+..+. |...-..+-+-|.=.+..++ -|+.+.+|+.+++.....+... ...|..+ .|.|.=++
T Consensus 70 el~eq~~-~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~-----shtIl~V~LvkPkpgvFv~~Iqh 141 (1311)
T KOG1900|consen 70 ELLEQFS-NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGL-----SHTILKVGLVKPKPGVFVPEIQH 141 (1311)
T ss_pred HHHHHhc-CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccch-----hhhheeeeeecCCCCcchhhhhe
Confidence 3333442 44444455555554433333 3899999999986544433322 1133333 24444456
Q ss_pred EEEEecCCeEEEEEcc----CCCcc-----ceeec-cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccC--------Cc
Q 019059 183 AVAATCESSVQFWDLR----SMGKT-----NSIEH-AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRML--------KA 243 (346)
Q Consensus 183 l~~~~~d~~i~i~d~~----~~~~~-----~~~~~-~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~ 243 (346)
+++.+.--.|.++-+. ++... .++.. +- |+++....+|+ +|++| .||.++-.-.... ++
T Consensus 142 lLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~G-~dg~lyEl~Yq~~~gWf~~rc~K 219 (1311)
T KOG1900|consen 142 LLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFFAG-RDGNLYELVYQAEDGWFGSRCRK 219 (1311)
T ss_pred eEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc-EEEee-cCCCEEEEEEeccCchhhccccc
Confidence 6665555556665443 22111 11211 22 99999888887 66554 5564432211110 00
Q ss_pred -------------ceeeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 244 -------------PIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 244 -------------~~~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.+..+. .+..+|..+...... ..+.+-++.++|++||+..
T Consensus 220 iclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 220 ICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence 011222 467789999998777 8999999999999999986
No 430
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.03 E-value=0.88 Score=36.02 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=45.4
Q ss_pred eCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccc----ccccceeeEEEeCCCCCcEEEEeec
Q 019059 260 CNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSY----SDYEDSVYGLAWSSREPWIFASLSY 335 (346)
Q Consensus 260 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~ 335 (346)
+..++ .+|++.+.+|.+++||+...+.......- ...+... ......|..+..+.+|. -+++-+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si---------~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls- 85 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSI---------APLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS- 85 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccH---------HHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-
Confidence 34456 78999999999999999983221110000 0000000 03445688999998886 666665
Q ss_pred CCeEEEeeec
Q 019059 336 DGRVRNHMLE 345 (346)
Q Consensus 336 d~~v~vw~~~ 345 (346)
+|..+.|+.+
T Consensus 86 ng~~y~y~~~ 95 (219)
T PF07569_consen 86 NGDSYSYSPD 95 (219)
T ss_pred CCCEEEeccc
Confidence 5778888753
No 431
>PHA03098 kelch-like protein; Provisional
Probab=92.98 E-value=7.2 Score=35.81 Aligned_cols=139 Identities=10% Similarity=0.000 Sum_probs=64.9
Q ss_pred CcEEEEecC-----CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec--C----CeEEEEEccCCCc
Q 019059 134 HDKLVSIDE-----ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC--E----SSVQFWDLRSMGK 202 (346)
Q Consensus 134 ~~~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d----~~i~i~d~~~~~~ 202 (346)
.+++.||.+ ..+..||..+++- ..... ..........+.. ++...+.||. + ..+..||+.+.+-
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~-lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKW--REEPP-LIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCce--eeCCC-cCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 367777644 3577788775431 11111 1111111111222 4555566652 1 4588899886542
Q ss_pred cc--eeeccc-eeEEEeCCCCCcEEEEecCC--------CeEEEEEcccCCcceeeecC---CCcceEEEEeCCCCCcEE
Q 019059 203 TN--SIEHAH-VRNVDYDTKKKHLLVTAADE--------SGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFI 268 (346)
Q Consensus 203 ~~--~~~~~~-v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l 268 (346)
.. .+..+. -.+++. .++. +++.|+.+ ..+.+||..+.. ...+.. .......+.+ ++ .++
T Consensus 419 ~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~--~~-~iy 491 (534)
T PHA03098 419 SKGSPLPISHYGGCAIY-HDGK-IYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF--NN-KIY 491 (534)
T ss_pred eecCCCCccccCceEEE-ECCE-EEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--CC-EEE
Confidence 21 111111 112222 2344 67777643 237888877521 222211 1111122222 45 666
Q ss_pred EEecCC-----CeEEEEecCC
Q 019059 269 LSAGTD-----STVNLWLVST 284 (346)
Q Consensus 269 ~s~~~d-----~~i~iwd~~~ 284 (346)
+.|+.+ ..+.+||..+
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEcCCcCCcccceeEEEeCCC
Confidence 777654 4688888776
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.83 E-value=3.7 Score=32.01 Aligned_cols=116 Identities=9% Similarity=0.099 Sum_probs=64.0
Q ss_pred EEEEecCCCeEEEEEccc-CCcceeeecCCCcceEEEEeCCCCCcEEEEecCC------CeEEEE-ecCCCCCCCCCccc
Q 019059 223 LLVTAADESGIHLWDLRM-LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTD------STVNLW-LVSTSNHDELPSES 294 (346)
Q Consensus 223 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d------~~i~iw-d~~~~~~~~~~~~~ 294 (346)
+|++ ...+.|.+|++.. ..+++.+|.. -+.|..+.++..| .+|+|--.+ ..+|+| +.+....+......
T Consensus 31 Lfva-~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 31 LFVA-ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred EEEE-cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4443 5557899999983 2345556653 5889999999999 999986442 256776 33332111111110
Q ss_pred -----c-cCCcccccccc--ccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 295 -----L-VESPNQRANSL--LNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 295 -----~-~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
. ..+........ +-.++- +.++.+++..|-...++ .|+ ++.+.+|.+
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l 162 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLL-VGC-GNKLVLFTL 162 (215)
T ss_pred EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEE-EEc-CCEEEEEEE
Confidence 0 00000011111 112222 44578899888655344 444 577888875
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.66 E-value=0.79 Score=36.29 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=41.6
Q ss_pred CCCCCcEEEEecCCeEEEEEccCCCcccee------ec--------c-c-eeEEEeCCCCCcEEEEecCCCeEEEEEcc
Q 019059 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSI------EH--------A-H-VRNVDYDTKKKHLLVTAADESGIHLWDLR 239 (346)
Q Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~--------~-~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 239 (346)
..++.++++.+.+|.+++||+.+++.+..- -. . . |..+..+.+|. -+++- .+|..+.|+..
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEE-eCCCEEEeccc
Confidence 346788999999999999999988754322 10 1 1 77777777775 44443 34677777755
No 434
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.53 E-value=3.8 Score=36.39 Aligned_cols=74 Identities=8% Similarity=0.027 Sum_probs=47.5
Q ss_pred eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC--------cce---eee-------c-CCCcceEEEEeCCCC--CcEEE
Q 019059 211 VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK--------API---QEL-------P-GHTHWTWAVCCNPEY--DGFIL 269 (346)
Q Consensus 211 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~---~~~-------~-~~~~~v~~v~~~~~~--~~~l~ 269 (346)
|..+..++.|. .++-.+.+|.+.++=.+..+ ++. +++ . ...-.+..++|+|+. ...|.
T Consensus 106 V~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 106 VYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 77888889988 66666667765544322211 111 111 1 111235678899987 67788
Q ss_pred EecCCCeEEEEecCCC
Q 019059 270 SAGTDSTVNLWLVSTS 285 (346)
Q Consensus 270 s~~~d~~i~iwd~~~~ 285 (346)
.-+.|+.||+||+...
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 8888999999999873
No 435
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.31 E-value=11 Score=36.31 Aligned_cols=177 Identities=10% Similarity=0.064 Sum_probs=95.6
Q ss_pred EEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-----------C---CeEEEEEccCCC
Q 019059 136 KLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-----------E---SSVQFWDLRSMG 201 (346)
Q Consensus 136 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d---~~i~i~d~~~~~ 201 (346)
.++....+.+.+..++.-++...-. -.. ......+++.+....+++.+. . ..++++|-++-+
T Consensus 686 ~l~~~~~~~l~i~tid~iqkl~irt-vpl---~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 686 SLASANGGALTIGTIDEIQKLHIRT-VPL---GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred eEEEecCCceEEEEecchhhcceee-ecC---CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 3444446778777776432211111 111 114455566653333333321 1 247778877766
Q ss_pred ccceeeccc------eeEEEeCCCCCcEEEEec----------CCCeEEEEEcccCCcceeeecCC--CcceEEEEeCCC
Q 019059 202 KTNSIEHAH------VRNVDYDTKKKHLLVTAA----------DESGIHLWDLRMLKAPIQELPGH--THWTWAVCCNPE 263 (346)
Q Consensus 202 ~~~~~~~~~------v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~v~~~~~ 263 (346)
.....+... +.+..|..|.+.++++|. ..|.|.+|.... ...++....+ .+.+.++..- +
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~f-n 839 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVYALVEF-N 839 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeeccceeehhhh-C
Confidence 544333221 666668877443666664 347888888876 3344444332 2445554322 4
Q ss_pred CCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEE
Q 019059 264 YDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRN 341 (346)
Q Consensus 264 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~v 341 (346)
| +++|.- ..+|++|+..+ .+.++.-..+..++..+...-.+. .++.|..=+++.+
T Consensus 840 g-kllA~I--n~~vrLye~t~-------------------~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 840 G-KLLAGI--NQSVRLYEWTT-------------------ERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITL 894 (1096)
T ss_pred C-eEEEec--CcEEEEEEccc-------------------cceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEE
Confidence 4 666544 46899999987 445555555666677777766665 5566655444443
No 436
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.09 E-value=0.62 Score=25.34 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=27.4
Q ss_pred CCCCcEEEEe-cCCeEEEEEccCCCccceeeccc-eeEEEe
Q 019059 178 PHDVNAVAAT-CESSVQFWDLRSMGKTNSIEHAH-VRNVDY 216 (346)
Q Consensus 178 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~ 216 (346)
|+++.++++. .++.|.++|..+++....+..+. ...++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5677777766 47899999998887777666444 444444
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.84 E-value=3.5 Score=29.43 Aligned_cols=107 Identities=8% Similarity=0.086 Sum_probs=65.7
Q ss_pred EEeCCCCCcEEEEecCCeEEEEEccCCC--------ccceeeccc-eeEEEeCCC----CCcEEEEecCCCeEEEEEccc
Q 019059 174 GAWDPHDVNAVAATCESSVQFWDLRSMG--------KTNSIEHAH-VRNVDYDTK----KKHLLVTAADESGIHLWDLRM 240 (346)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~-v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~ 240 (346)
-.|....+.|++++.-++|.|++..... .+..+...+ |++++-.+- +...|+.|+. ..+-.||+.+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 3566667789999999999999876432 334444344 777755432 2236777765 5888999987
Q ss_pred CCcceeeecCCCcceEEEEeCCC---CCcEEEEecCCCeEEEEecCC
Q 019059 241 LKAPIQELPGHTHWTWAVCCNPE---YDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 241 ~~~~~~~~~~~~~~v~~v~~~~~---~~~~l~s~~~d~~i~iwd~~~ 284 (346)
... +. ++.-...|+++.+-.- ...++++| .+..|.=||..-
T Consensus 83 N~d-~F-yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G 126 (136)
T PF14781_consen 83 NSD-LF-YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG 126 (136)
T ss_pred Cch-hh-hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence 442 22 2334567777766322 21444444 467787777764
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.83 E-value=0.27 Score=46.03 Aligned_cols=135 Identities=10% Similarity=0.062 Sum_probs=76.0
Q ss_pred ecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCC-CCCcEEEEecCCeEEEEEcc--CCCcccee----ec--cc
Q 019059 140 IDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR--SMGKTNSI----EH--AH 210 (346)
Q Consensus 140 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~----~~--~~ 210 (346)
+..+.+++-+..+.-.. ....+ +....+-.++|.. +...+. -.=|.+.+||+. .|+....+ .. +.
T Consensus 108 ~~~~~vrvaN~~~sm~~-~~l~k---gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs 181 (1283)
T KOG1916|consen 108 GMENGVRVANQEPSMRH-NELAK---GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGS 181 (1283)
T ss_pred chhhhhhhccCcchhHH-HHHHh---cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCC
Confidence 34567777666543211 11222 2333666666632 112222 123678889876 33322111 11 11
Q ss_pred -eeEEEeCC---CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEE-----------eCCCCCcEEEEecCCC
Q 019059 211 -VRNVDYDT---KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVC-----------CNPEYDGFILSAGTDS 275 (346)
Q Consensus 211 -v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~-----------~~~~~~~~l~s~~~d~ 275 (346)
+.-|.|.| +.. .+..+..++.+++...... ....+.+|..++..++ .+||| ..|+++..||
T Consensus 182 ~~~~V~wcp~~~~~~-~ic~~~~~~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG 257 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKV-YICYGLKGGEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDG 257 (1283)
T ss_pred Ccceeeecccccccc-eeeeccCCCceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCC
Confidence 55556654 333 5666777888888776542 2344556776655433 58999 9999999999
Q ss_pred eEEEEecCC
Q 019059 276 TVNLWLVST 284 (346)
Q Consensus 276 ~i~iwd~~~ 284 (346)
.++.|.+.-
T Consensus 258 ~v~f~Qiyi 266 (1283)
T KOG1916|consen 258 SVGFYQIYI 266 (1283)
T ss_pred ccceeeeee
Confidence 988887764
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.62 E-value=0.69 Score=24.79 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=20.4
Q ss_pred ceeeEEEeCCCCCcEEEEeecC--CeEEEe
Q 019059 315 DSVYGLAWSSREPWIFASLSYD--GRVRNH 342 (346)
Q Consensus 315 ~~v~~~~~~~~~~~~l~s~~~d--~~v~vw 342 (346)
..-....|+|||+.++.+...+ |...||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3467789999999777777777 777666
No 440
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.54 E-value=8.4 Score=33.25 Aligned_cols=126 Identities=11% Similarity=0.128 Sum_probs=71.5
Q ss_pred CceEEEEee--c-CCCCcEEEEecCCeEEEEEcCCCCC-C--ceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEE
Q 019059 121 GKINCVLWW--S-SGRHDKLVSIDEENIFLWSLDCSNK-N--AQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQF 194 (346)
Q Consensus 121 ~~i~~~~~~--~-~~~~~~~~~~~d~~i~vwd~~~~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 194 (346)
..++.+|+- + +|...+++...+|.+.-|.+..... . .++..... ....+.+++.......|+.+-.+.-|.-
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe~g~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDETGRLYVGEEDVGIWR 233 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEEEEEETTTEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecccCCEEEecCccEEEE
Confidence 346777774 3 3554455567889999888863221 1 11111111 1227888888887788999988888888
Q ss_pred EEccCCC--cccee---eccc----eeEEEeC--CCCC-cEEEEecCCCeEEEEEcccCCcceeee
Q 019059 195 WDLRSMG--KTNSI---EHAH----VRNVDYD--TKKK-HLLVTAADESGIHLWDLRMLKAPIQEL 248 (346)
Q Consensus 195 ~d~~~~~--~~~~~---~~~~----v~~~~~~--~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~ 248 (346)
|+.+... ....+ ...+ +..|+.- +++. +++++.-.+++..+|+.+.....+..|
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 8876322 11111 1122 7777764 3433 566666677899999977544334444
No 441
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.52 E-value=2.4 Score=36.88 Aligned_cols=153 Identities=15% Similarity=0.065 Sum_probs=87.8
Q ss_pred ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcc----ceeecc---c-ee-EEEeCCCCCcEEEEecCCCeEEEE-E
Q 019059 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKT----NSIEHA---H-VR-NVDYDTKKKHLLVTAADESGIHLW-D 237 (346)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~---~-v~-~~~~~~~~~~~l~~~~~dg~i~i~-d 237 (346)
...+..+-..||++.++.-+. ..+.++++.+.... ....++ | |+ .+..-..+. -+.+++.||-|.-| |
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~dG~vsQWFd 297 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHEDGLVSQWFD 297 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcCCCceeeeee
Confidence 346777888999999888765 67888888754321 111122 1 33 222223343 67788899988776 6
Q ss_pred cccCCcce----eeecCCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccc
Q 019059 238 LRMLKAPI----QELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDY 313 (346)
Q Consensus 238 ~~~~~~~~----~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (346)
.+....+. +.++-...++..+.-..+. +-+++-...|++.++.... .+.+..-..
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~-------------------~~~lL~~~~- 356 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTS-------------------EKLLLFERA- 356 (733)
T ss_pred eecCCCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeeccc-------------------Ccceehhhh-
Confidence 66543321 2222222333333222222 6678888888888876654 222221111
Q ss_pred cceeeEEEeCCCCCcEEEEeecCCeEEEeeec
Q 019059 314 EDSVYGLAWSSREPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 314 ~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~ 345 (346)
-..+.-+++||.+. .+++ -..|.++++.++
T Consensus 357 ~~~~~~~~~Sp~~~-~Ll~-e~~gki~~~~l~ 386 (733)
T COG4590 357 YQAPQLVAMSPNQA-YLLS-EDQGKIRLAQLE 386 (733)
T ss_pred hcCcceeeeCcccc-hhee-ecCCceEEEEec
Confidence 22356689999887 4443 345778888775
No 442
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.49 E-value=1.6 Score=33.11 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=26.1
Q ss_pred ceEEEEeCCCC-----CcEEEEecCCCeEEEEecCC
Q 019059 254 WTWAVCCNPEY-----DGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 254 ~v~~v~~~~~~-----~~~l~s~~~d~~i~iwd~~~ 284 (346)
.+..++|||.| .-+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999965 35889999999999998764
No 443
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.47 E-value=6.1 Score=32.86 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=71.4
Q ss_pred eEEEEEccCCCccceeeccc--------eeEEEeCCCC-----CcEEEEecCCCeEEEEEcccCCcceeeecC-------
Q 019059 191 SVQFWDLRSMGKTNSIEHAH--------VRNVDYDTKK-----KHLLVTAADESGIHLWDLRMLKAPIQELPG------- 250 (346)
Q Consensus 191 ~i~i~d~~~~~~~~~~~~~~--------v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------- 250 (346)
+|.+||+.+.+.++.+..+. +..+.+.... .+.+++-...+.|-++|+.+.+ ..+.+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~-s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGK-SWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTE-EEEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCc-EEEEecCCcceecc
Confidence 57777877777665554221 7777776532 2345555566789999998732 2222211
Q ss_pred ------------CCcceEEEEeCC---CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccc
Q 019059 251 ------------HTHWTWAVCCNP---EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYED 315 (346)
Q Consensus 251 ------------~~~~v~~v~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (346)
....+..++.+| ++ +.|+-....+ -++|.+.+............ .....+..+.....
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~-----~~~~~v~~lG~k~~ 186 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQ-----ALASQVQDLGDKGS 186 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT--SEEEEEEHHHHCSTT--HHH------HHHT-EEEEE---
T ss_pred ccceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCC-CcEEEEEHHHhhCccccccc-----cccccceeccccCC
Confidence 112244555544 44 4444433222 23343332100000000000 00111222211123
Q ss_pred eeeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 316 SVYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 316 ~v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
....++.+++|. ++.+--..+.|..|+.++
T Consensus 187 ~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 QSDGMAIDPNGN-LYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp SECEEEEETTTE-EEEEECCCTEEEEEETTT
T ss_pred CCceEEECCCCc-EEEecCCCCeEEEEeCCC
Confidence 456788888886 788888888999998653
No 444
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.18 E-value=13 Score=34.55 Aligned_cols=141 Identities=12% Similarity=-0.044 Sum_probs=70.9
Q ss_pred cEEEEecCC-----eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC------CeEEEEEccCCCcc
Q 019059 135 DKLVSIDEE-----NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE------SSVQFWDLRSMGKT 203 (346)
Q Consensus 135 ~~~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~ 203 (346)
++++||.|| ++..||..+.+- .....-.. .......+.+ ++...++||.+ .++..||..+.+-.
T Consensus 383 iYavGG~dg~~~l~svE~YDp~~~~W--~~va~m~~-~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 383 LYAVGGFDGEKSLNSVECYDPVTNKW--TPVAPMLT-RRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred EEEEeccccccccccEEEecCCCCcc--cccCCCCc-ceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 566776664 477788776542 22111111 1112222223 46666777643 45788998877632
Q ss_pred --ceeeccc-eeEEEeCCCCCcEEEEecCCC-----eEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEecCCC
Q 019059 204 --NSIEHAH-VRNVDYDTKKKHLLVTAADES-----GIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDS 275 (346)
Q Consensus 204 --~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~d~ 275 (346)
..+.... -..++.- ++. +++.|+.|+ +|..||.++.. ...+..-..+...+.....+..+.++|+.|+
T Consensus 458 ~~~~M~~~R~~~g~a~~-~~~-iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 458 LIAPMNTRRSGFGVAVL-NGK-IYVVGGFDGTSALSSVERYDPETNQ--WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred ecCCcccccccceEEEE-CCE-EEEECCccCCCccceEEEEcCCCCc--eeEcccCccccccccEEEECCEEEEEecccC
Confidence 2222222 2223332 343 888888776 37778877522 2222222222222222222227778888776
Q ss_pred -----eEEEEecCC
Q 019059 276 -----TVNLWLVST 284 (346)
Q Consensus 276 -----~i~iwd~~~ 284 (346)
+|..||..+
T Consensus 534 ~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 534 NNNLNTVECYDPET 547 (571)
T ss_pred ccccceeEEcCCCC
Confidence 466666654
No 445
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.18 E-value=8.6 Score=32.69 Aligned_cols=214 Identities=13% Similarity=0.128 Sum_probs=107.0
Q ss_pred CCceEEEEeecCCCCcEEEEecCCe------EEEEEcCCCC-CCceeeec------ccCCC-----ceeeEEEEeCCCCC
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEEN------IFLWSLDCSN-KNAQVQSK------QSSGM-----LHYLSGGAWDPHDV 181 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~------i~vwd~~~~~-~~~~~~~~------~~~~~-----~~~v~~~~~~~~~~ 181 (346)
-+.+..+.+.+++.. +++-++++. +..+++.... ....+... ...+. .....++++.+++.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788889865443 555566666 6666655311 11111100 00110 11455788866666
Q ss_pred cEEEEecC------CeEEEEEccCCCccceee--c-------------cc--eeEEEeCCCCCcEEEEecC-----CC--
Q 019059 182 NAVAATCE------SSVQFWDLRSMGKTNSIE--H-------------AH--VRNVDYDTKKKHLLVTAAD-----ES-- 231 (346)
Q Consensus 182 ~l~~~~~d------~~i~i~d~~~~~~~~~~~--~-------------~~--v~~~~~~~~~~~~l~~~~~-----dg-- 231 (346)
.+++.-.+ ..|+.++.. ++....+. . .. ..+|+++|+|. .|+++.+ |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECccccCCCcc
Confidence 66665556 788888876 54433221 0 11 88999999998 4444332 22
Q ss_pred e-------EEEE--EcccCCcceeee----cC-----CCcceEEEEeCCCCCcEEEEec-----CCCeEEEEecCCCCCC
Q 019059 232 G-------IHLW--DLRMLKAPIQEL----PG-----HTHWTWAVCCNPEYDGFILSAG-----TDSTVNLWLVSTSNHD 288 (346)
Q Consensus 232 ~-------i~i~--d~~~~~~~~~~~----~~-----~~~~v~~v~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~ 288 (346)
. ++++ |..+...+...+ .. ....+..+.+-+++ .+|+.=- ....++|+.+......
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvLER~~~~~~~~~~ri~~v~l~~at 254 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVLERDFSPGTGNYKRIYRVDLSDAT 254 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEEEccCCCCccceEEEEEEEccccc
Confidence 1 4554 443312222222 21 34678888899998 6554321 2346667655542111
Q ss_pred CCCc--ccccCCcccccccccccccc---ccceeeEEEeCC--CCCcEEEEeecCC
Q 019059 289 ELPS--ESLVESPNQRANSLLNSYSD---YEDSVYGLAWSS--REPWIFASLSYDG 337 (346)
Q Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~~l~s~~~d~ 337 (346)
.... ............+.+..+.. ....+-.|+|-| ++...|+..+.|.
T Consensus 255 ~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnN 310 (326)
T PF13449_consen 255 DVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNN 310 (326)
T ss_pred ccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCC
Confidence 1100 00000001111222222221 144588899976 6666677777654
No 446
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.08 E-value=12 Score=34.25 Aligned_cols=51 Identities=16% Similarity=-0.001 Sum_probs=34.6
Q ss_pred eEEEEEccCCCccceeeccc-----------eeEEEeCCCCC--cEEEEecCCCeEEEEEcccC
Q 019059 191 SVQFWDLRSMGKTNSIEHAH-----------VRNVDYDTKKK--HLLVTAADESGIHLWDLRML 241 (346)
Q Consensus 191 ~i~i~d~~~~~~~~~~~~~~-----------v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~ 241 (346)
.|.-.|+++++..-.++.-+ ..-+....+|+ .+++.+..+|.+++.|.++.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 57778999998776665322 11222223553 37888999999999998873
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.04 E-value=4.3 Score=28.98 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=45.1
Q ss_pred EEEeCCCCCcEEEEecCCCeEEEEEcccCC-------cceeeecCCCcceEEEEeCC---C-CCcEEEEecCCCeEEEEe
Q 019059 213 NVDYDTKKKHLLVTAADESGIHLWDLRMLK-------APIQELPGHTHWTWAVCCNP---E-YDGFILSAGTDSTVNLWL 281 (346)
Q Consensus 213 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~v~~~~---~-~~~~l~s~~~d~~i~iwd 281 (346)
.-.|....+ .|+++..-|+|.|++..... ..+..+. -...|++++-.+ + +...|+.|+. ..+..||
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 345677777 78888888999999876422 1334443 456677775333 2 2356777765 5699999
Q ss_pred cCC
Q 019059 282 VST 284 (346)
Q Consensus 282 ~~~ 284 (346)
+..
T Consensus 80 V~~ 82 (136)
T PF14781_consen 80 VEN 82 (136)
T ss_pred ccc
Confidence 987
No 448
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.96 E-value=5.3 Score=34.99 Aligned_cols=83 Identities=8% Similarity=-0.022 Sum_probs=51.0
Q ss_pred eeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEE-EEeecCC-----
Q 019059 59 EGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINC-VLWWSSG----- 132 (346)
Q Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----- 132 (346)
..+......+.+++.+|.++ +++++ ++-|.|.++|+. .+..++.+++-.+.-.. +.....+
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~-laA~t---DslGRV~LiD~~---------~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~ 367 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGR-LAAVT---DSLGRVLLIDVA---------RGIVVRMWKGYRDAQCGWIEVPEEGDRDRS 367 (415)
T ss_pred EeeccCCceEEEEEECCCCC-EEEEE---cCCCcEEEEECC---------CChhhhhhccCccceEEEEEeecccccccc
Confidence 34555567789999999865 44543 677899999998 66677666665443211 1111111
Q ss_pred ------------CCcEEEEecCCeEEEEEcCCCC
Q 019059 133 ------------RHDKLVSIDEENIFLWSLDCSN 154 (346)
Q Consensus 133 ------------~~~~~~~~~d~~i~vwd~~~~~ 154 (346)
..+++-.-..|.|.||.++.+.
T Consensus 368 ~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 368 NSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred cccccCCCCcceEEEEEEeccCCeEEEEecCCCC
Confidence 1122223557899999998654
No 449
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.86 E-value=8.3 Score=31.94 Aligned_cols=207 Identities=14% Similarity=0.143 Sum_probs=108.9
Q ss_pred ceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-----cCCceEEEEeecCCC--------
Q 019059 67 EIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-----HVGKINCVLWWSSGR-------- 133 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~-------- 133 (346)
.-+.|+++|.+..-++. ..-+...+||........ .....+-++.. .....+.+.|+....
T Consensus 24 N~WGia~~p~~~~WVad----ngT~~~TlYdg~~~~~~g--~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVAN----TGTGTATLYVGNPDTQPL--VQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred ccceeEecCCCCEEEec----CCcceEEeecCCcccccC--CccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence 45789999988777663 456789999986211000 01122223321 123566677764322
Q ss_pred ---CcEEEEecCCeEEEEEcCCCCC---Cceeee-cccCCCceeeEEEEeC--CCCCcEEEEe-cCCeEEEEEccCCCcc
Q 019059 134 ---HDKLVSIDEENIFLWSLDCSNK---NAQVQS-KQSSGMLHYLSGGAWD--PHDVNAVAAT-CESSVQFWDLRSMGKT 203 (346)
Q Consensus 134 ---~~~~~~~~d~~i~vwd~~~~~~---~~~~~~-~~~~~~~~~v~~~~~~--~~~~~l~~~~-~d~~i~i~d~~~~~~~ 203 (346)
..++.+++||+|.-|...-+.. ...+.. ....+. --..+++. ..+..|+++. ..++|.++|-.-.+..
T Consensus 98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~ga--vYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 98 TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGN--VYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcc--eeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 1256667899999998643322 111111 111111 22344444 3345566554 5789999986533211
Q ss_pred --cee-----eccc----e---------eEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC--CCcceEEEEeC
Q 019059 204 --NSI-----EHAH----V---------RNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG--HTHWTWAVCCN 261 (346)
Q Consensus 204 --~~~-----~~~~----v---------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~v~~~ 261 (346)
..+ ..+. | +-..-.++.. -=+.|..-|.|-+||+. ...++.+.. .-...+.|+..
T Consensus 176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeC
Confidence 011 1111 1 1112222222 12233445789999987 556666642 22344566665
Q ss_pred CCC-----CcEEEEecCCCeEEEEecCC
Q 019059 262 PEY-----DGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 262 ~~~-----~~~l~s~~~d~~i~iwd~~~ 284 (346)
|-. ..+|+---.||+|..||..+
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCC
Confidence 521 15666555699999999987
No 450
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.78 E-value=9.4 Score=33.84 Aligned_cols=31 Identities=13% Similarity=0.359 Sum_probs=25.0
Q ss_pred cceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
..|..++..+.. +.+++.+.++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 348889998888 9999999999999999975
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=90.58 E-value=10 Score=34.29 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=31.3
Q ss_pred CCCcEEEEecC--CeEEEEEccCCCcc--ceeeccc--eeEEEeCCCCCcEEEEecCCC---eEEEEEccc
Q 019059 179 HDVNAVAATCE--SSVQFWDLRSMGKT--NSIEHAH--VRNVDYDTKKKHLLVTAADES---GIHLWDLRM 240 (346)
Q Consensus 179 ~~~~l~~~~~d--~~i~i~d~~~~~~~--~~~~~~~--v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~ 240 (346)
++...++||.+ ..+..||..+.+-. ..+.... ...++. ++. +.+.|+.++ .+..||.++
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCC
Confidence 45555666643 46788887655321 2222111 222222 454 777777553 467788764
No 452
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.29 E-value=11 Score=31.17 Aligned_cols=200 Identities=10% Similarity=0.081 Sum_probs=107.0
Q ss_pred ceEEEEeecCCCCcEEEEecCCeEEEEEcCCC-----CCCceeeecccCC--CceeeEEEEeCCCCC------------c
Q 019059 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCS-----NKNAQVQSKQSSG--MLHYLSGGAWDPHDV------------N 182 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~--~~~~v~~~~~~~~~~------------~ 182 (346)
.-+.|+++|.+. +.++....+...+||.... .+..........+ .....+.+.|+.... .
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 357899999887 4566556789999998721 1111222111011 123567777764332 2
Q ss_pred EEEEecCCeEEEEEccCCCc-----cceeec---cc-eeEEEeCC--CCCcEEEEecCCCeEEEEEcccCCcceeeecCC
Q 019059 183 AVAATCESSVQFWDLRSMGK-----TNSIEH---AH-VRNVDYDT--KKKHLLVTAADESGIHLWDLRMLKAPIQELPGH 251 (346)
Q Consensus 183 l~~~~~d~~i~i~d~~~~~~-----~~~~~~---~~-v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 251 (346)
++.+++||+|.-|...-... ...+.. +. -..+++.. .+.++.++--..++|.+||-.- . ++..-...
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~-~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-R-PPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-c-cccCCCCc
Confidence 56777899999998543322 112221 11 44555543 3554666666789999998552 2 11110001
Q ss_pred CcceEEEEeCCCC-----CcEE-------------EEecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc-
Q 019059 252 THWTWAVCCNPEY-----DGFI-------------LSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD- 312 (346)
Q Consensus 252 ~~~v~~v~~~~~~-----~~~l-------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (346)
..+-.-..|.|-+ .+++ +.|..-|.|-+||+. +.+++.+..
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--------------------G~l~~r~as~ 240 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--------------------GQLLRRVASS 240 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--------------------CcEEEEeccC
Confidence 1110001122211 0122 223334678888877 466665532
Q ss_pred -ccceeeEEEeCC------CCCcEEEEeecCCeEEEeeec
Q 019059 313 -YEDSVYGLAWSS------REPWIFASLSYDGRVRNHMLE 345 (346)
Q Consensus 313 -~~~~v~~~~~~~------~~~~~l~s~~~d~~v~vw~~~ 345 (346)
.-...+.|+..| .+. +|+.--.||+|..||..
T Consensus 241 g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 241 GRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQ 279 (336)
T ss_pred CcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCC
Confidence 223456777755 454 77777779999999864
No 453
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.83 E-value=23 Score=34.14 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=48.3
Q ss_pred cceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCcc--ccccccccccccccceeeEEEeCCCCCcEE
Q 019059 253 HWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPN--QRANSLLNSYSDYEDSVYGLAWSSREPWIF 330 (346)
Q Consensus 253 ~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 330 (346)
..|.++.....+ .+++..-.||+|.++|..+.+..... ......+. ......-+.+.. -.++..++|||.+. .+
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~-~~~~~~~~~v~s~~~~Gf~fp~-~~~~~~vafSPt~c-~~ 335 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNET-RTNGEPPNTVTSLFQAGFHFPC-IQPPLHVAFSPTMC-SL 335 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhccc-ccccCCcccccccccccccccc-CCCCceEEECcccc-eE
Confidence 346667666666 78899999999999999874322211 00000000 000011111211 11456799999987 77
Q ss_pred EEeecCCeEE
Q 019059 331 ASLSYDGRVR 340 (346)
Q Consensus 331 ~s~~~d~~v~ 340 (346)
+....++.+.
T Consensus 336 v~~~~~~~~~ 345 (753)
T PF11635_consen 336 VQIDEDGKTK 345 (753)
T ss_pred EEEecCCCce
Confidence 8888888754
No 454
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.70 E-value=0.37 Score=45.15 Aligned_cols=132 Identities=15% Similarity=0.158 Sum_probs=75.3
Q ss_pred CCeEEEEEccCCCccceeec---cceeEEEeCCCCCcEEEEecCCCeEEEEEcccCC-c-----ceeeecCCCcceEEEE
Q 019059 189 ESSVQFWDLRSMGKTNSIEH---AHVRNVDYDTKKKHLLVTAADESGIHLWDLRMLK-A-----PIQELPGHTHWTWAVC 259 (346)
Q Consensus 189 d~~i~i~d~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~-----~~~~~~~~~~~v~~v~ 259 (346)
.+.+++-+....-.-..+.. +.+-.+.|.......+. ..-|.+.+||+.... . .++........+.-|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45566666543322112221 22666666432211122 233667788876321 1 1222222334445566
Q ss_pred eCC---CCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEE-----------eCCC
Q 019059 260 CNP---EYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLA-----------WSSR 325 (346)
Q Consensus 260 ~~~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~ 325 (346)
|.| .. -++..+-.++.|++...++ .....+.+|+.++.+++ .+||
T Consensus 188 wcp~~~~~-~~ic~~~~~~~i~lL~~~r--------------------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpD 246 (1283)
T KOG1916|consen 188 WCPIAVNK-VYICYGLKGGEIRLLNINR--------------------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPD 246 (1283)
T ss_pred eccccccc-ceeeeccCCCceeEeeech--------------------HHHHHHHhcCCCcccHHHHhhchhhheeeCCC
Confidence 665 44 6777777888888877775 22344556777666654 5789
Q ss_pred CCcEEEEeecCCeEEEeee
Q 019059 326 EPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 326 ~~~~l~s~~~d~~v~vw~~ 344 (346)
|. .++....||.++.|.+
T Consensus 247 Gt-v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 247 GT-VFAWAISDGSVGFYQI 264 (1283)
T ss_pred Cc-EEEEeecCCccceeee
Confidence 97 8899999999999875
No 455
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.35 E-value=16 Score=31.64 Aligned_cols=191 Identities=10% Similarity=0.086 Sum_probs=100.9
Q ss_pred cEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc--EEEEec-C---CeEEEEEccCCC-ccceee
Q 019059 135 DKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN--AVAATC-E---SSVQFWDLRSMG-KTNSIE 207 (346)
Q Consensus 135 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~-d---~~i~i~d~~~~~-~~~~~~ 207 (346)
+++.+..++-+.+||+... ....+.... .....-...+.+. ++. |++++. + ..|++|.+.... .+..+.
T Consensus 70 lIigTdK~~GL~VYdL~Gk-~lq~~~~Gr-~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGK-ELQSLPVGR-PNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp EEEEEETTTEEEEEETTS--EEEEE-SS--EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred eEEEEeCCCCEEEEcCCCc-EEEeecCCC-cceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 5666677889999999743 222221111 0001122333442 333 455553 2 479999776321 122221
Q ss_pred -------ccc--eeEEEe--CC-CCCcEEEEecCCCeEEEEEcccCC------cceeeecCCCcceEEEEeCCCCCcEEE
Q 019059 208 -------HAH--VRNVDY--DT-KKKHLLVTAADESGIHLWDLRMLK------APIQELPGHTHWTWAVCCNPEYDGFIL 269 (346)
Q Consensus 208 -------~~~--v~~~~~--~~-~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~v~~~~~~~~~l~ 269 (346)
... +..+++ +| ++...++....+|.+..|-+.... .+++.|.. ...+..+...... ..|+
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~-g~LY 223 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET-GRLY 223 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT-TEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc-CCEE
Confidence 111 666666 33 456566677888998888775322 24666664 4567888888777 7899
Q ss_pred EecCCCeEEEEecCCCCCCCCCcccccCCcccccccccccccc--ccceeeEEEeC--CCCC-cEEEEeecCCeEEEeee
Q 019059 270 SAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSD--YEDSVYGLAWS--SREP-WIFASLSYDGRVRNHML 344 (346)
Q Consensus 270 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~--~~~~-~~l~s~~~d~~v~vw~~ 344 (346)
.+-+|.-|.-|+....... .+..+....+ ....|-.|+.- +++. ++|+|.-.+++..||+.
T Consensus 224 vgEE~~GIW~y~Aep~~~~--------------~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGN--------------DRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEETTTEEEEEESSCCC-S----------------EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred EecCccEEEEEecCCCCCC--------------cceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 9998877766666531000 1222322222 23346666653 3443 56666667888999986
Q ss_pred c
Q 019059 345 E 345 (346)
Q Consensus 345 ~ 345 (346)
+
T Consensus 290 ~ 290 (381)
T PF02333_consen 290 E 290 (381)
T ss_dssp S
T ss_pred C
Confidence 5
No 456
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.29 E-value=21 Score=32.83 Aligned_cols=60 Identities=8% Similarity=-0.141 Sum_probs=36.8
Q ss_pred eEEEEEcCCCCCCceeeecccCCCc----eeeEEEEeCCCCC---cEEEEecCCeEEEEEccCCCcc
Q 019059 144 NIFLWSLDCSNKNAQVQSKQSSGML----HYLSGGAWDPHDV---NAVAATCESSVQFWDLRSMGKT 203 (346)
Q Consensus 144 ~i~vwd~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~ 203 (346)
.|.-.|+++++....++...+.... ....-+....+++ .++.+..+|.+++.|.++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 5667788887766655543321111 1112223334555 5667788999999999998864
No 457
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=88.15 E-value=22 Score=32.98 Aligned_cols=203 Identities=11% Similarity=0.095 Sum_probs=110.7
Q ss_pred ceEEeeecCCCCceEEEE-eecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCC--
Q 019059 67 EIWDLSSCPFDQRIFSTV-FSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEE-- 143 (346)
Q Consensus 67 ~v~~~~~~~~~~~l~~~~-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~-- 143 (346)
.+-.++.|||.+.++-+. ..|....++++-|+. +++.+-. .-.+....++|.+|++.++.+...++
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~---------tg~~~~d--~i~~~~~~~~Wa~d~~~lfYt~~d~~~r 198 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLA---------TGEELPD--EITNTSGSFAWAADGKTLFYTRLDENHR 198 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecc---------cccccch--hhcccccceEEecCCCeEEEEEEcCCCC
Confidence 566788899998887765 234556779999988 3333221 12334667899999998777775433
Q ss_pred --eEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec---CCeEEEEEccCCCccceee--c--cceeEE
Q 019059 144 --NIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC---ESSVQFWDLRSMGKTNSIE--H--AHVRNV 214 (346)
Q Consensus 144 --~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~--~--~~v~~~ 214 (346)
.|....+.+.....++.-... . .....++.-+....+|+.... .+.+++.+.........+. . ++-..+
T Consensus 199 p~kv~~h~~gt~~~~d~lvyeE~-d-~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~ 276 (682)
T COG1770 199 PDKVWRHRLGTPGSSDELVYEEK-D-DRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSV 276 (682)
T ss_pred cceEEEEecCCCCCcceEEEEcC-C-CcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEee
Confidence 233334444223333222221 1 112333444445666666553 3578888887665432222 1 112222
Q ss_pred EeCCCCCcEEEEecCCC-eEEEEEccc--CCcceeeecCCCcceEEEEeCCCCCcEEEEecC-CC--eEEEEecCCC
Q 019059 215 DYDTKKKHLLVTAADES-GIHLWDLRM--LKAPIQELPGHTHWTWAVCCNPEYDGFILSAGT-DS--TVNLWLVSTS 285 (346)
Q Consensus 215 ~~~~~~~~~l~~~~~dg-~i~i~d~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~~-d~--~i~iwd~~~~ 285 (346)
.-. +..+++-...+| ..+++.... .....+.+..|...+.--.++-.. .+|+..-. ++ .|++++.+++
T Consensus 277 eh~--~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~-~~lVl~eR~~glp~v~v~~~~~~ 350 (682)
T COG1770 277 EHG--GDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFA-DHLVLLERQEGLPRVVVRDRKTG 350 (682)
T ss_pred eec--CcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeec-cEEEEEecccCCceEEEEecCCC
Confidence 222 443555555555 455554332 122344556677777666666666 55555443 33 6888888764
No 458
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.14 E-value=18 Score=31.93 Aligned_cols=155 Identities=8% Similarity=0.090 Sum_probs=82.2
Q ss_pred CcceEEEeecccCCCCeEEEEEecCCCC---eEEEeeeeccccceEEeeecC----CCCceEEEEeecCCcceEEEEecC
Q 019059 27 DHTSFLTGTLSLKEENEVHLLRLSSGGT---ELICEGLFSHPNEIWDLSSCP----FDQRIFSTVFSTGESYGAAIWQIP 99 (346)
Q Consensus 27 ~~~~~~~g~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~~~~~~~d~~i~vw~~~ 99 (346)
+..++++|+ ..|.++++.=...+. .+.... .-..+|..+..-+ .....+++. ....+.||.+.
T Consensus 36 ~~d~IivGS----~~G~LrIy~P~~~~~~~~~lllE~--~l~~PILqv~~G~F~s~~~~~~LaVL----hP~kl~vY~v~ 105 (418)
T PF14727_consen 36 GSDKIIVGS----YSGILRIYDPSGNEFQPEDLLLET--QLKDPILQVECGKFVSGSEDLQLAVL----HPRKLSVYSVS 105 (418)
T ss_pred CccEEEEec----cccEEEEEccCCCCCCCccEEEEE--ecCCcEEEEEeccccCCCCcceEEEe----cCCEEEEEEEE
Confidence 556778874 467777776543221 122121 2336777777643 233344433 67789999985
Q ss_pred cccCCCCCccceeeeeeecc--CCceEEEEeecC----CCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEE
Q 019059 100 ELYGQLNSPQLERIAALDAH--VGKINCVLWWSS----GRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSG 173 (346)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~----~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 173 (346)
...+.......-.+..+..| ......+++-|- ++..+++-+-||.+.+++-+.-.- ...... .- -.-.
T Consensus 106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-~~~lp~--~l---lPgP 179 (418)
T PF14727_consen 106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-SRFLPD--FL---LPGP 179 (418)
T ss_pred ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-EEEcCC--CC---CCcC
Confidence 33222111122222333344 233444444332 244455558899999999763221 111111 11 2234
Q ss_pred EEeCCCCCcEEEEecCCeEEEEEc
Q 019059 174 GAWDPHDVNAVAATCESSVQFWDL 197 (346)
Q Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~ 197 (346)
+.+.+....+++++.+..|.-|..
T Consensus 180 l~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 180 LCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEeecCCEEEEecCceeEEEecH
Confidence 567777778888888888888764
No 459
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.88 E-value=23 Score=33.04 Aligned_cols=195 Identities=13% Similarity=0.144 Sum_probs=96.7
Q ss_pred eecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeec-cCCceEEEEeecC--CCCcEEEE-ecCCeEEE
Q 019059 72 SSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDA-HVGKINCVLWWSS--GRHDKLVS-IDEENIFL 147 (346)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~~~~~~-~~d~~i~v 147 (346)
.++|+...+-.+. +...|.-|-+. |+.+.+-.+.- .+..|.||..... +..++++| ...+.-++
T Consensus 34 ~~s~~sn~IdiGI----S~S~ISsYIi~--------PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~l 101 (670)
T PF10395_consen 34 DFSPDSNQIDIGI----SGSAISSYIIK--------PTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKL 101 (670)
T ss_pred ccCCCCceEEEEe----ccchhhheecC--------CCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEE
Confidence 6777776666543 22345555544 23344444332 2455677765432 23345555 33444444
Q ss_pred EEcCCC----------CCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC--ccceeeccc-----
Q 019059 148 WSLDCS----------NKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG--KTNSIEHAH----- 210 (346)
Q Consensus 148 wd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~----- 210 (346)
-.+..+ ......... .....+.++.|.++++.+++...+|.|.+||...+. .+......+
T Consensus 102 l~i~~~~~~~~~~~~~~e~~~~~~~---kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ 178 (670)
T PF10395_consen 102 LLIERKVGSTEDGTVNSETTNEFEL---KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVS 178 (670)
T ss_pred EEEEccCccccccccCccccceEEE---EcccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccccee
Confidence 444332 000011111 123478999999999999999999999999993322 111222111
Q ss_pred ----eeEEEeCCCCCcEEEEecC-C---CeEEEEEcccCCcceeeec---CCCcceEEEEeCCCCCcEEEEecCCCeEEE
Q 019059 211 ----VRNVDYDTKKKHLLVTAAD-E---SGIHLWDLRMLKAPIQELP---GHTHWTWAVCCNPEYDGFILSAGTDSTVNL 279 (346)
Q Consensus 211 ----v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~s~~~d~~i~i 279 (346)
|.......... ++++-+. + -..+++.+......+..+. .+........|+-+. ..|+-- .++.|.+
T Consensus 179 ys~fv~~~~~~~~~~-~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~-G~LY~l-~~~~i~~ 255 (670)
T PF10395_consen 179 YSKFVNDFELENGKD-LLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQF-GKLYQL-SKKTISS 255 (670)
T ss_pred hhhhhcccccccCCc-eEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeC-CEEEEE-eCCEEEE
Confidence 22222212233 3433333 2 2567888733233444443 122222333333332 233333 5778999
Q ss_pred EecCC
Q 019059 280 WLVST 284 (346)
Q Consensus 280 wd~~~ 284 (346)
|++..
T Consensus 256 ysip~ 260 (670)
T PF10395_consen 256 YSIPN 260 (670)
T ss_pred EEcCC
Confidence 99876
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.77 E-value=4 Score=37.60 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=27.3
Q ss_pred eeEEEEeCC----CCCcEEEEecCCeEEEEEccCCCcccee
Q 019059 170 YLSGGAWDP----HDVNAVAATCESSVQFWDLRSMGKTNSI 206 (346)
Q Consensus 170 ~v~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 206 (346)
....+++++ +..++++.+.|+.||+||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 345556655 6678889999999999999999985443
No 461
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.61 E-value=12 Score=30.13 Aligned_cols=131 Identities=11% Similarity=0.140 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEec-C--CeEEEEEccCC--Cc-----cceeeccc-eeE
Q 019059 145 IFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC-E--SSVQFWDLRSM--GK-----TNSIEHAH-VRN 213 (346)
Q Consensus 145 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~--~~-----~~~~~~~~-v~~ 213 (346)
-.+||+.+++.. .+... ....+.+-.+.+||+.+.+|+. + ..+++++.... .+ ...+..++ -.+
T Consensus 48 s~~yD~~tn~~r-pl~v~----td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT 122 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT 122 (243)
T ss_pred EEEEecCCCcEE-eccCC----CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence 347888765421 11111 1224556678899999988875 3 46888886541 11 11122233 334
Q ss_pred EEeCCCCCcEEEEecCCC-eEEEEEcccCCc-ceee--ecC----CCcc-eEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 214 VDYDTKKKHLLVTAADES-GIHLWDLRMLKA-PIQE--LPG----HTHW-TWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 214 ~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~-~~~~--~~~----~~~~-v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
..--|||+ +++.|+... +..+|..+.... .... +.. .... =-.+...|+| ++|+.+..+. .|||...
T Consensus 123 ~~~L~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s--~i~d~~~ 198 (243)
T PF07250_consen 123 ATTLPDGR-VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGS--IIYDYKT 198 (243)
T ss_pred ceECCCCC-EEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCCc--EEEeCCC
Confidence 44457898 666666553 455555432111 1111 110 0011 1245567999 8888888654 4567776
No 462
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.54 E-value=16 Score=30.66 Aligned_cols=188 Identities=10% Similarity=0.067 Sum_probs=83.2
Q ss_pred ceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeec-ccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCC
Q 019059 122 KINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK-QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSM 200 (346)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 200 (346)
...++.|..+ . .+++ +..+. .+...+.++....+... ..++ ....+....++ ....++..|.|+. ....+
T Consensus 63 ~l~~I~f~~~-~-g~iv-G~~g~-ll~T~DgG~tW~~v~l~~~lpg---s~~~i~~l~~~-~~~l~~~~G~iy~-T~DgG 133 (302)
T PF14870_consen 63 HLNSISFDGN-E-GWIV-GEPGL-LLHTTDGGKTWERVPLSSKLPG---SPFGITALGDG-SAELAGDRGAIYR-TTDGG 133 (302)
T ss_dssp EEEEEEEETT-E-EEEE-EETTE-EEEESSTTSS-EE----TT-SS----EEEEEEEETT-EEEEEETT--EEE-ESSTT
T ss_pred eEEEEEecCC-c-eEEE-cCCce-EEEecCCCCCcEEeecCCCCCC---CeeEEEEcCCC-cEEEEcCCCcEEE-eCCCC
Confidence 3567777543 2 3444 44443 33344444433333211 1222 22333333333 3444445555432 22333
Q ss_pred Cccceeeccc---eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEecCCCe
Q 019059 201 GKTNSIEHAH---VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAGTDST 276 (346)
Q Consensus 201 ~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~~d~~ 276 (346)
+.=..+..+. +..+..++++. +++++..-....-||.-.. .-... +.....|..+.|.|++ .+.+.+ ..|.
T Consensus 134 ~tW~~~~~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~-~lw~~~-~Gg~ 208 (302)
T PF14870_consen 134 KTWQAVVSETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDG-NLWMLA-RGGQ 208 (302)
T ss_dssp SSEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTE
T ss_pred CCeeEcccCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCc--cceEEccCccceehhceecCCC-CEEEEe-CCcE
Confidence 3222222122 88888999998 7777766555667775431 12221 2245789999999998 655544 7788
Q ss_pred EEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeE
Q 019059 277 VNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRV 339 (346)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v 339 (346)
|+.=+.... .. ...+.+.......-.+.+++|.+++. +.++|+ .|.+
T Consensus 209 ~~~s~~~~~--------~~------~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l 255 (302)
T PF14870_consen 209 IQFSDDPDD--------GE------TWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL 255 (302)
T ss_dssp EEEEE-TTE--------EE------EE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E
T ss_pred EEEccCCCC--------cc------ccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE
Confidence 887762110 00 00111111211222389999999876 666655 4444
No 463
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.39 E-value=3.1 Score=22.42 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCCcceeeecC
Q 019059 218 TKKKHLLVTAADESGIHLWDLRMLKAPIQELPG 250 (346)
Q Consensus 218 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 250 (346)
|+++.++++...++.|.++|..+ ...+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 56665666666788999999876 444555443
No 464
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.89 E-value=2.4 Score=36.87 Aligned_cols=165 Identities=14% Similarity=0.177 Sum_probs=92.2
Q ss_pred eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCC-CceeeE-EEEeCCCCCcEEEEec
Q 019059 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSG-MLHYLS-GGAWDPHDVNAVAATC 188 (346)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~~ 188 (346)
+.++.+..-.+.+..+-..|||+.+.+.++ .++.++++.+.....+......++ ....|+ .+..-.-+..++++..
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC--CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 333334444566778888999997555554 788888887543222211111111 112232 2222334666888888
Q ss_pred CCeEEEE-EccCCCccceeeccceeEEEeCC--------C-CCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEE
Q 019059 189 ESSVQFW-DLRSMGKTNSIEHAHVRNVDYDT--------K-KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAV 258 (346)
Q Consensus 189 d~~i~i~-d~~~~~~~~~~~~~~v~~~~~~~--------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v 258 (346)
||.|.-| |.+.+.. ..+. |++...+.| + .+..+++-+.+|++.++.... .+++ -++.--..+.-+
T Consensus 289 dG~vsQWFdvr~~~~-p~l~--h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~l-L~~~~~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQ-PHLN--HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLL-LFERAYQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCC-Ccce--eeeccccCcccceeeccccccceEEEEcCCCceeeeeccc-Ccce-ehhhhhcCccee
Confidence 9988776 5553322 1111 122222222 1 222567777788888776554 2222 222223466778
Q ss_pred EeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 259 CCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 259 ~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
++||.+ .++++-. .|.++++.+.+
T Consensus 364 ~~Sp~~-~~Ll~e~-~gki~~~~l~N 387 (733)
T COG4590 364 AMSPNQ-AYLLSED-QGKIRLAQLEN 387 (733)
T ss_pred eeCccc-chheeec-CCceEEEEecC
Confidence 999999 7777654 46799998887
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.64 E-value=31 Score=34.72 Aligned_cols=152 Identities=10% Similarity=0.075 Sum_probs=80.6
Q ss_pred CCCCeEEEEEecCCCCeEEEeeeeccccceEEeee--------cCCCCceEEEEeecCCcceEEEEecCcccCCCCCccc
Q 019059 39 KEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSS--------CPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQL 110 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~ 110 (346)
.-++.+++|++..++...... +-...|..+.. .|.=++++..+ .--.|.++-+............
T Consensus 96 TiDn~L~lWny~~~~e~~~~d---~~shtIl~V~LvkPkpgvFv~~IqhlLvva----T~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYD---GLSHTILKVGLVKPKPGVFVPEIQHLLVVA----TPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EeCCeEEEEEcCCCCcccccc---chhhhheeeeeecCCCCcchhhhheeEEec----ccceEEEEEEEeccccCccccc
Confidence 357899999999865433322 23334444443 33344555542 3334555544311111000111
Q ss_pred eeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEEEE--cCCC---CCCcee-------------eecccCCCceeeE
Q 019059 111 ERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS--LDCS---NKNAQV-------------QSKQSSGMLHYLS 172 (346)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd--~~~~---~~~~~~-------------~~~~~~~~~~~v~ 172 (346)
.....+......|.|+....+|+ ++.+|.||.|+-.- ...+ +...++ .......+..+|.
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGR--IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~ 246 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGR--IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIR 246 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCc--EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcce
Confidence 11123333356789999888888 55555677554222 1111 000000 0011124456889
Q ss_pred EEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059 173 GGAWDPHDVNAVAATCESSVQFWDLRS 199 (346)
Q Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (346)
.+.....-..+.+-+..++|.+||+..
T Consensus 247 qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 247 QITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeEeccccceeeeeccCceEEEEEccC
Confidence 999987667777888899999999986
No 466
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.31 E-value=23 Score=31.27 Aligned_cols=149 Identities=9% Similarity=0.113 Sum_probs=86.6
Q ss_pred cCCCCcEEEEecCCeEEEEEcCCCCCC--ceeeecccCCCceeeEEEE---eCC-CCCcEEEEecCCeEEEEEccCCCcc
Q 019059 130 SSGRHDKLVSIDEENIFLWSLDCSNKN--AQVQSKQSSGMLHYLSGGA---WDP-HDVNAVAATCESSVQFWDLRSMGKT 203 (346)
Q Consensus 130 ~~~~~~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~---~~~-~~~~l~~~~~d~~i~i~d~~~~~~~ 203 (346)
+++...+++|+..|.++||+....... ..+....... +|..+. |.+ .....++.-.-..+.+|.+......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~---PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKD---PILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCC---cEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 445556888999999999998654321 1222222222 565554 423 2334555566778888888422111
Q ss_pred --------ceeeccc-----eeEEEeCC----CCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCc
Q 019059 204 --------NSIEHAH-----VRNVDYDT----KKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDG 266 (346)
Q Consensus 204 --------~~~~~~~-----v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 266 (346)
....-.| ...+..-| .++..+.+-+-||.+.+|+-+.. ....+-..---...+.+.+.- .
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~t-D 187 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPRT-D 187 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCCCCCCcCeEEeecC-C
Confidence 1111122 33333333 22347888899999999997642 112222222223446777877 7
Q ss_pred EEEEecCCCeEEEEecCC
Q 019059 267 FILSAGTDSTVNLWLVST 284 (346)
Q Consensus 267 ~l~s~~~d~~i~iwd~~~ 284 (346)
.|++++.+..+.-|..+.
T Consensus 188 sfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQD 205 (418)
T ss_pred EEEEecCceeEEEecHHH
Confidence 899999898999997654
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.10 E-value=25 Score=31.45 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=59.4
Q ss_pred cccceEEeeecCCCCceEEEEeecCC-cceEEEEecCcccCCCCCccceeeeee----e-ccCCceEEEEeecCC-----
Q 019059 64 HPNEIWDLSSCPFDQRIFSTVFSTGE-SYGAAIWQIPELYGQLNSPQLERIAAL----D-AHVGKINCVLWWSSG----- 132 (346)
Q Consensus 64 h~~~v~~~~~~~~~~~l~~~~~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~----~-~~~~~i~~~~~~~~~----- 132 (346)
.-...+.|+|.|+++.|++- . .|.|++++-... ....+..+ . ........|+++|+-
T Consensus 28 GL~~Pw~maflPDG~llVtE-----R~~G~I~~v~~~~~-------~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~ 95 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTE-----RATGKILRVNPETG-------EVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKG 95 (454)
T ss_pred CCCCceEEEEcCCCeEEEEE-----ecCCEEEEEeCCCC-------ceeeeecCCceeccCCCCceeeEEECCCccccCC
Confidence 34567889999998766663 4 588888875410 11111111 1 135678899999873
Q ss_pred -CCcEEEEec---------CCeEEEEEcCCCC----CCceeeecccCCCceeeEEEEeCCCCCcEEEEec
Q 019059 133 -RHDKLVSID---------EENIFLWSLDCSN----KNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATC 188 (346)
Q Consensus 133 -~~~~~~~~~---------d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 188 (346)
.+++++-+. ...|.-|.+.... ....+.........+.-..++|.||+.+.++.+.
T Consensus 96 n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 96 NPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 233443221 2345555554211 1112221111111224567889999986665554
No 468
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.41 E-value=4.5 Score=37.29 Aligned_cols=32 Identities=16% Similarity=0.416 Sum_probs=23.5
Q ss_pred ceEEEEeCC----CCCcEEEEecCCCeEEEEecCCCC
Q 019059 254 WTWAVCCNP----EYDGFILSAGTDSTVNLWLVSTSN 286 (346)
Q Consensus 254 ~v~~v~~~~----~~~~~l~s~~~d~~i~iwd~~~~~ 286 (346)
.+..+.+++ +. .+|++.+.|+++|+||+.++.
T Consensus 216 ~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 216 VAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQ 251 (547)
T ss_dssp -EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTC
T ss_pred ccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCe
Confidence 345566665 44 899999999999999999843
No 469
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=84.90 E-value=8.9 Score=25.31 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=31.3
Q ss_pred cCCeEEEEEccCCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEE
Q 019059 188 CESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIH 234 (346)
Q Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~ 234 (346)
.+|.+..||..+++....+..-+ .+.|++++++.+++++=..-..|.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ 82 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRIL 82 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEE
Confidence 46889999999887554444333 999999999996666554444443
No 470
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.75 E-value=37 Score=32.33 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=55.5
Q ss_pred EEEEeCCCCCcEEEEecCC-----eEEEEEcc---CCCccceeeccc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCC
Q 019059 172 SGGAWDPHDVNAVAATCES-----SVQFWDLR---SMGKTNSIEHAH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLK 242 (346)
Q Consensus 172 ~~~~~~~~~~~l~~~~~d~-----~i~i~d~~---~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 242 (346)
..+.|-|+|..+++.+.|| .+.++..+ .|+.-....... +..++|+-... .++. .....+.+|-..+..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~-vlav-~~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLST-VLAV-AEGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHH-HHHH-hhcceEEEEEccceE
Confidence 4478999999999887543 45555433 222211122122 77788877665 4443 345689999877533
Q ss_pred cceeeecCCCcceEEEEeCCCCCcEEEE
Q 019059 243 APIQELPGHTHWTWAVCCNPEYDGFILS 270 (346)
Q Consensus 243 ~~~~~~~~~~~~v~~v~~~~~~~~~l~s 270 (346)
-.++ ....-..+.-+.|+|.....|.-
T Consensus 328 WYLK-~e~~ip~~s~vkwhpe~~nTl~f 354 (1243)
T COG5290 328 WYLK-VERQIPGISYVKWHPEEKNTLLF 354 (1243)
T ss_pred EEEE-EeecCCCcceeeeccccCcEEEE
Confidence 2221 12233456778899876444443
No 471
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=84.50 E-value=32 Score=31.39 Aligned_cols=234 Identities=14% Similarity=0.091 Sum_probs=109.4
Q ss_pred CCCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeecc-ccceEEeeecCCCC-ceEEEEeecCCcceEEEEecCcc
Q 019059 24 ADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSH-PNEIWDLSSCPFDQ-RIFSTVFSTGESYGAAIWQIPEL 101 (346)
Q Consensus 24 ~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~~~~~~~~~d~~i~vw~~~~~ 101 (346)
...+..++++++ ++|.++.+.+..++..+... ..+. .....++.+..++. .++++. ...|+.+.-|...
T Consensus 218 ~~~~~~~~lL~~----e~G~l~~l~l~~~~~~i~i~-~~g~~~~~~s~l~~l~~g~d~lf~gs--~~gds~l~~~~~~-- 288 (504)
T PF10433_consen 218 YDKDGDRILLQD----EDGDLYLLTLDNDGGSISIT-YLGTLCSIASSLTYLKNGGDYLFVGS--EFGDSQLLQISLS-- 288 (504)
T ss_dssp SSTTSSEEEEEE----TTSEEEEEEEEEEEEEEEEE-EEEE--S-ESEEEEESTT--EEEEEE--SSS-EEEEEEESE--
T ss_pred ecCCCCEEEEEe----CCCeEEEEEEEECCCeEEEE-EcCCcCChhheEEEEcCCCEEEEEEE--ecCCcEEEEEeCC--
Confidence 344556666653 67889888888765422222 2233 44556677766552 444443 3345666666644
Q ss_pred cCCCCCccceeeeeeeccCCceEEEEeecC---CC-------CcEEEE--ecCCeEEEEEcCCCCCCceeeecccCCCce
Q 019059 102 YGQLNSPQLERIAALDAHVGKINCVLWWSS---GR-------HDKLVS--IDEENIFLWSLDCSNKNAQVQSKQSSGMLH 169 (346)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~-------~~~~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 169 (346)
..+.+..+ ..-++|..++..+. +. .+++++ +.+|.+++..-.-+-...........+ ..
T Consensus 289 -------~l~~~~~~-~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~ 359 (504)
T PF10433_consen 289 -------NLEVLDSL-PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VT 359 (504)
T ss_dssp -------SEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EE
T ss_pred -------CcEEEEec-cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ce
Confidence 55666666 34578888888532 12 334444 357899887543111100222222222 34
Q ss_pred eeEEEEeCC-CCCcEEEEecCCeEEEEEcc---CCCcccee-----eccc--eeEEEeCCCCCcEEEEecCCCeEEEEEc
Q 019059 170 YLSGGAWDP-HDVNAVAATCESSVQFWDLR---SMGKTNSI-----EHAH--VRNVDYDTKKKHLLVTAADESGIHLWDL 238 (346)
Q Consensus 170 ~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~---~~~~~~~~-----~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 238 (346)
.++.+.... ++.+++.+..+ .-+++.+. ..+.+..+ .... +.+-.+. ++ .++=... ..|++.+.
T Consensus 360 ~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~--~ivQVt~-~~i~l~~~ 434 (504)
T PF10433_consen 360 GIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DG--RIVQVTP-KGIRLIDL 434 (504)
T ss_dssp EEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TT--EEEEEES-SEEEEEES
T ss_pred EEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CC--eEEEEec-CeEEEEEC
Confidence 566665443 23445555444 44455553 22222111 1111 2222222 22 3333333 45788887
Q ss_pred ccCCcceeeec-CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 239 RMLKAPIQELP-GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 239 ~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.. .+...... .....|.+.+... .+++.+-.++.+..+.+..
T Consensus 435 ~~-~~~~~~w~~~~~~~I~~a~~~~---~~v~v~~~~~~~~~~~~~~ 477 (504)
T PF10433_consen 435 ED-GKLTQEWKPPAGSIIVAASIND---PQVLVALSGGELVYFELDD 477 (504)
T ss_dssp SS-TSEEEEEE-TTS---SEEEESS---SEEEEEE-TTEEEEEEEET
T ss_pred CC-CeEEEEEeCCCCCeEEEEEECC---CEEEEEEeCCcEEEEEEEC
Confidence 65 33333332 2344555555544 3455555578888888875
No 472
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.13 E-value=18 Score=28.23 Aligned_cols=99 Identities=8% Similarity=-0.027 Sum_probs=52.1
Q ss_pred CcEEEEe--cCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEE-EecCCeEEEEEccCCCccceeeccc
Q 019059 134 HDKLVSI--DEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSMGKTNSIEHAH 210 (346)
Q Consensus 134 ~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~ 210 (346)
+++.+++ ....|++||+.+++...........-.-..++. -+..+.. .=.+|.-..+|.++-+++..+.-..
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhcccccCC
Confidence 4455554 367899999997764433322210000011111 1233332 2357888899999888777665222
Q ss_pred -eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059 211 -VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (346)
Q Consensus 211 -v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (346)
=..++. ++.+ ++.+....+++.-|.++
T Consensus 132 eGWgLt~--d~~~-LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLTS--DDKN-LIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeeec--CCcc-eEeeCCceEEEecCHHH
Confidence 444443 4543 44444445677666654
No 473
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.11 E-value=18 Score=28.30 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=59.1
Q ss_pred CcEEEEecCCeEEEEEccCCC--ccceeeccc-eeEEEeCCCCCcEEEEecCC---C---eEEEE-Eccc---CCccee-
Q 019059 181 VNAVAATCESSVQFWDLRSMG--KTNSIEHAH-VRNVDYDTKKKHLLVTAADE---S---GIHLW-DLRM---LKAPIQ- 246 (346)
Q Consensus 181 ~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d---g---~i~i~-d~~~---~~~~~~- 246 (346)
..|+.+.....|.+|++.+.. ....+..-. |..+.++..|+ ++++--.+ . .+|+| +.+. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 556565777889999998433 333444333 99999999999 56653221 1 55665 2221 112222
Q ss_pred eecC---------------------CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 247 ELPG---------------------HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 247 ~~~~---------------------~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
.+.+ -..++.+++..|.. .-|+.|+ ++.+.||.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~t-G~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVT-GNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCC-CCEEEEc-CCEEEEEEEEE
Confidence 1112 12355677777765 3455555 45799998876
No 474
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.10 E-value=25 Score=29.89 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=56.9
Q ss_pred eEEEEeecCCCCcEEEEecC------CeEEEEEcCCCCCCceee-ec---------ccCCCceeeEEEEeCCCCCcEEEE
Q 019059 123 INCVLWWSSGRHDKLVSIDE------ENIFLWSLDCSNKNAQVQ-SK---------QSSGMLHYLSGGAWDPHDVNAVAA 186 (346)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~d------~~i~vwd~~~~~~~~~~~-~~---------~~~~~~~~v~~~~~~~~~~~l~~~ 186 (346)
.-++++.+++. ++++.-.+ ..|..++.. +.....+. +. ........+.+++++|+++.|+++
T Consensus 87 ~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 87 PEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred hhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34778866776 34444335 677777766 43333321 11 111234578999999999977766
Q ss_pred ec-----CC--e-------EEE--EEccC-CCccce----eec------cc-eeEEEeCCCCCcEEEE
Q 019059 187 TC-----ES--S-------VQF--WDLRS-MGKTNS----IEH------AH-VRNVDYDTKKKHLLVT 226 (346)
Q Consensus 187 ~~-----d~--~-------i~i--~d~~~-~~~~~~----~~~------~~-v~~~~~~~~~~~~l~~ 226 (346)
.. |+ . +++ ||..+ ++.... +.. .. +..+.+-++++ +++.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvL 231 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVL 231 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEE
Confidence 53 22 1 444 55544 222221 121 23 88999999998 5553
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=83.94 E-value=24 Score=29.43 Aligned_cols=174 Identities=10% Similarity=0.070 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCCCceeeecccCC-CceeeEEEEeCCCC-----CcEEEEe-cCCeEEEEEccCCCccceeec--------
Q 019059 144 NIFLWSLDCSNKNAQVQSKQSSG-MLHYLSGGAWDPHD-----VNAVAAT-CESSVQFWDLRSMGKTNSIEH-------- 208 (346)
Q Consensus 144 ~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-----~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-------- 208 (346)
.|.+||+.+++....+....... ....+..+.+.... .+++.+. ..+.|.++|+.+++.-+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 45556666655433333322111 23356777775522 2333333 356899999998763322210
Q ss_pred ------c------c-eeEEEeCC---CCCcEEEEecCCCeEEEEEc---ccCCc--------ceeeecCCCcceEEEEeC
Q 019059 209 ------A------H-VRNVDYDT---KKKHLLVTAADESGIHLWDL---RMLKA--------PIQELPGHTHWTWAVCCN 261 (346)
Q Consensus 209 ------~------~-v~~~~~~~---~~~~~l~~~~~dg~i~i~d~---~~~~~--------~~~~~~~~~~~v~~v~~~ 261 (346)
+ . +..++.+| +++.+....-....++--.. ++... .++.+-........++.+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 0 0 55555554 55433433333333322221 11110 112221112355678889
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCC--CCCcEEEE
Q 019059 262 PEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSS--REPWIFAS 332 (346)
Q Consensus 262 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s 332 (346)
++| .++++--..+.|..|+....-..+ ..+.+..-...-.++.++.+.+ +|. +.+.
T Consensus 195 ~~G-~ly~~~~~~~aI~~w~~~~~~~~~-------------~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~ 252 (287)
T PF03022_consen 195 PNG-NLYFTDVEQNAIGCWDPDGPYTPE-------------NFEILAQDPRTLQWPDGLKIDPEGDGY-LWVL 252 (287)
T ss_dssp TTT-EEEEEECCCTEEEEEETTTSB-GC-------------CEEEEEE-CC-GSSEEEEEE-T--TS--EEEE
T ss_pred CCC-cEEEecCCCCeEEEEeCCCCcCcc-------------chheeEEcCceeeccceeeeccccCce-EEEE
Confidence 999 888888889999999988610000 0122222222234678889988 775 4443
No 476
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.69 E-value=30 Score=30.41 Aligned_cols=152 Identities=10% Similarity=-0.019 Sum_probs=0.0
Q ss_pred CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccC
Q 019059 120 VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 199 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (346)
.+....+..++++. +++.+..|.+..=.-............... .+..+.|.+++..++++...+.+.--|-..
T Consensus 238 ~Gsf~~v~~~~dG~--~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~----~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~ 311 (398)
T PLN00033 238 TGTFSTVNRSPDGD--YVAVSSRGNFYLTWEPGQPYWQPHNRASAR----RIQNMGWRADGGLWLLTRGGGLYVSKGTGL 311 (398)
T ss_pred ccceeeEEEcCCCC--EEEEECCccEEEecCCCCcceEEecCCCcc----ceeeeeEcCCCCEEEEeCCceEEEecCCCC
Q ss_pred CCccceeeccc-------eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEec
Q 019059 200 MGKTNSIEHAH-------VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAG 272 (346)
Q Consensus 200 ~~~~~~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~~ 272 (346)
......+.... +.++.|.+++. ++++|..--.++--|--+.-+....-..-....+.+.|.+++ +.+++|.
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~-~g~~~G~ 389 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDK-KGFVLGN 389 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCC-ceEEEeC
Q ss_pred CCCeEEEE
Q 019059 273 TDSTVNLW 280 (346)
Q Consensus 273 ~d~~i~iw 280 (346)
+|.|.-|
T Consensus 390 -~G~il~~ 396 (398)
T PLN00033 390 -DGVLLRY 396 (398)
T ss_pred -CcEEEEe
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=82.24 E-value=48 Score=31.68 Aligned_cols=30 Identities=10% Similarity=0.276 Sum_probs=23.3
Q ss_pred ceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (346)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (346)
...|...+|+.|.+.+.....+..|.++|-
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 346888899999987777777778877763
No 478
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.19 E-value=46 Score=31.46 Aligned_cols=52 Identities=4% Similarity=-0.075 Sum_probs=38.9
Q ss_pred eeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeeccc---eeEEEeCCCC
Q 019059 169 HYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEHAH---VRNVDYDTKK 220 (346)
Q Consensus 169 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---v~~~~~~~~~ 220 (346)
..+..+..+|+.++|+.-...|.|.+-+....+..-.+..+. ...++|.-+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 367888999999999999999999999888777665554222 4566666544
No 479
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.84 E-value=19 Score=35.31 Aligned_cols=231 Identities=13% Similarity=0.145 Sum_probs=117.2
Q ss_pred CCCcceEEEeecccCCCCeEEEEEecCCCCeEEEeeeeccccceEEeeecCCCCceEEEEeecCCcceEEEEecCcccCC
Q 019059 25 DTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQ 104 (346)
Q Consensus 25 ~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~ 104 (346)
.-+..++++-.-..+..+++.++++.....++. .|- ..-++-.+|+.+.++.. ..+++.|++++
T Consensus 30 TmESDk~icvRe~~~~~~qVvIiDm~d~~~piR-----Rpi-sadSaIm~P~kkvialk-----a~~~lQIFniE----- 93 (1666)
T KOG0985|consen 30 TMESDKFICVREKVGGQNQVVIIDMADPVNPIR-----RPI-SADSAIMNPDKKVIALK-----AGKTLQIFNIE----- 93 (1666)
T ss_pred eeecCceEEEeccCCCcceEEEEEcCCCccccc-----CCC-CCCchhhCchHHHHHHh-----hCCeEEEEehh-----
Confidence 335566777766777888999999988654432 121 22344568877766664 44589999997
Q ss_pred CCCccceeeeeeecc--CCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCc
Q 019059 105 LNSPQLERIAALDAH--VGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVN 182 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 182 (346)
.... .+.| ...|.--.|-.+.. +.+++ +..|.-|..+....+.+.......-....+-...-++..+.
T Consensus 94 ----~KsK---~ksh~m~E~VifWkWIs~kt-i~lVT--~tsV~hws~egds~PvkmfdRh~sL~gcQiInyk~~~~~eW 163 (1666)
T KOG0985|consen 94 ----RKSK---SKAHTMDEDVIFWKWISDKT-IALVT--ATSVYHWSKEGDSAPVKMFDRHRSLNGCQIINYKGNLNAEW 163 (1666)
T ss_pred ----hhhh---hccCCCCCceEEEEecchhH-HHHhh--hhheeeecccccchHHHHHHhhhccccceEEEeccccccCc
Confidence 2222 2333 44566666766654 22232 47888898875444443333221111112333333444555
Q ss_pred EEEEec-------CCeEEEEEccCCCccceeeccc-eeEEEeCCCC---Cc-EEEEec---CCCeEEEEEcccCCc---c
Q 019059 183 AVAATC-------ESSVQFWDLRSMGKTNSIEHAH-VRNVDYDTKK---KH-LLVTAA---DESGIHLWDLRMLKA---P 244 (346)
Q Consensus 183 l~~~~~-------d~~i~i~d~~~~~~~~~~~~~~-v~~~~~~~~~---~~-~l~~~~---~dg~i~i~d~~~~~~---~ 244 (346)
++..+- -|.+++|....... ..+ .+| ..+..|-.+| +. ++..+. ..|++++-....... +
T Consensus 164 l~LVGIs~r~~rv~G~MQLyS~~rkvS-Q~i-egHaa~Fa~fk~egne~p~~lF~fa~r~~~~GkLhiiEvg~~~tg~~~ 241 (1666)
T KOG0985|consen 164 LALVGISARTNRVAGKMQLYSVDRKVS-QPI-EGHAASFAAFKDEGNEVPSCLFSFAVRKPTGGKLHIIEVGDPPTGNMP 241 (1666)
T ss_pred eeEEeeecccchhheeeeeeeeccchh-hhh-HHHHHHHHHhcccCCCCceEEEEecCCCCCCCeeEEEecCCCccCCCc
Confidence 554431 36788887664321 111 133 1111222222 00 111111 124666655432110 0
Q ss_pred -----eeeecC---CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 245 -----IQELPG---HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 245 -----~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
+-.+.. ...-.-.+..+.+. ..++....-|.+.+||+.+
T Consensus 242 f~kk~vDvffppda~nDFPvamqvs~k~-~vIyLiTKyG~ihlYdlEt 288 (1666)
T KOG0985|consen 242 FLKKKVDVFFPPDAINDFPVAMQVSAKY-GVIYLITKYGYIHLYDLET 288 (1666)
T ss_pred chhhhhhccCChhhccccchheeecccc-CeEEEEeecchhhhhhhhh
Confidence 001110 11112344556566 6777778888999999998
No 480
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.26 E-value=60 Score=31.56 Aligned_cols=171 Identities=11% Similarity=0.119 Sum_probs=97.3
Q ss_pred ccccceEEeeec---CC---CCceEEEEeecCCcceEEEEecC------cccCCCCCccceeeeeeecc---CCceEEEE
Q 019059 63 SHPNEIWDLSSC---PF---DQRIFSTVFSTGESYGAAIWQIP------ELYGQLNSPQLERIAALDAH---VGKINCVL 127 (346)
Q Consensus 63 ~h~~~v~~~~~~---~~---~~~l~~~~~~~~~d~~i~vw~~~------~~~~~~~~~~~~~~~~~~~~---~~~i~~~~ 127 (346)
.-..+|..|+|. .. ....+++- ....+.|+... ........-...++..+..+ ..+...++
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr----t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~ 152 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR----TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVA 152 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE----cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEE
Confidence 355788999998 21 22344442 45567777722 11111112233455555432 34778999
Q ss_pred eecCCCCcEEEEecCCeEEEEEcCCCCCCc--eeeec-ccCC-------CceeeEEEEeCCCCCcEEEEecCCeEEEEEc
Q 019059 128 WWSSGRHDKLVSIDEENIFLWSLDCSNKNA--QVQSK-QSSG-------MLHYLSGGAWDPHDVNAVAATCESSVQFWDL 197 (346)
Q Consensus 128 ~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~--~~~~~-~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (346)
|+|.....+++-...|.-.||++....... ..... ...+ ....-..+.|.++...|++.. ...+.++|+
T Consensus 153 FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~ 231 (765)
T PF10214_consen 153 FNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDF 231 (765)
T ss_pred eccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEEC
Confidence 999877657777778999999992211111 11100 0011 112345778887777676665 567899999
Q ss_pred cCCCccceeecc---c-eeEEEeCCCCCc-EEEEecCCCeEEEEEccc
Q 019059 198 RSMGKTNSIEHA---H-VRNVDYDTKKKH-LLVTAADESGIHLWDLRM 240 (346)
Q Consensus 198 ~~~~~~~~~~~~---~-v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 240 (346)
++......+... . |..+.-+|.... .|+.. ...|...|+..
T Consensus 232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 232 ESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred CCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 987653312212 1 889988888332 33332 25777778776
No 481
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.63 E-value=15 Score=24.25 Aligned_cols=54 Identities=17% Similarity=0.058 Sum_probs=30.6
Q ss_pred ecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCCeEEEeee
Q 019059 271 AGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDGRVRNHML 344 (346)
Q Consensus 271 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~v~vw~~ 344 (346)
+..+|.+.-||..+ ++. ..+...-.-.+.|+.++++..+|++=..-.+|.-|-+
T Consensus 33 ~~~~GRll~ydp~t-------------------~~~-~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 33 GRPTGRLLRYDPST-------------------KET-TVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp T---EEEEEEETTT-------------------TEE-EEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CCCCcCEEEEECCC-------------------CeE-EEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 44567888899887 333 2222222246889999999866665555555544433
No 482
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=79.49 E-value=66 Score=31.56 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=61.6
Q ss_pred CCCCCcEEEEecCCeEEEEEccCCCccceee---ccc-eeEEEeCCC--CCc---EEEEecCCCeEEEEEcccCCcce-e
Q 019059 177 DPHDVNAVAATCESSVQFWDLRSMGKTNSIE---HAH-VRNVDYDTK--KKH---LLVTAADESGIHLWDLRMLKAPI-Q 246 (346)
Q Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~-v~~~~~~~~--~~~---~l~~~~~dg~i~i~d~~~~~~~~-~ 246 (346)
+.+...++.++.++.+...++..+. ++... .++ |.|+.++|- +++ +++.|..+..+.+.-.-.....+ +
T Consensus 496 ~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~ 574 (1096)
T KOG1897|consen 496 SANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITH 574 (1096)
T ss_pred eecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeee
Confidence 3344567777777777777777655 22111 122 999999976 444 78888776655544322111111 1
Q ss_pred e-ec--CCCcceEEEEeCCCCCcEEEEecCCCeEEEEecCC
Q 019059 247 E-LP--GHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 284 (346)
Q Consensus 247 ~-~~--~~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~ 284 (346)
. +. .-...|.-..+-.+. .+|.++..||.+.-|-+..
T Consensus 575 ~~l~~~~iPRSIl~~~~e~d~-~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 575 EQLSGEIIPRSILLTTFEGDI-HYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred eccCCCccchheeeEEeeccc-eEEEEEcCCceEEEEEEEc
Confidence 1 11 112334444555566 8999999999888776554
No 483
>PRK13613 lipoprotein LpqB; Provisional
Probab=78.86 E-value=57 Score=30.51 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=76.5
Q ss_pred eeEEEEeCCCCCcEEEEecCC-eEEEEEccCCCc----cceeeccc-eeEEEeCCCCCcEEEEec-CCCe--EEEEEccc
Q 019059 170 YLSGGAWDPHDVNAVAATCES-SVQFWDLRSMGK----TNSIEHAH-VRNVDYDTKKKHLLVTAA-DESG--IHLWDLRM 240 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~----~~~~~~~~-v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~ 240 (346)
.+.+.+.++++..++....++ .+++..+..+.. ......+. ++.-.|.+++. +...-. .++. +++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g~-vWtvd~~~~~~~vl~v~~~-- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRGD-LWVVDRDPADPRLLWLLQG-- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCCC-EEEecCCCCCceEEEEEcC--
Confidence 567888999998888776655 566665543333 22222244 77888888874 333311 1222 554432
Q ss_pred CCcce--eeecCCC-cceEEEEeCCCCCcEEEEecC---CCeEEEEecCCCCCCCCCcccccCCcccccccccccccccc
Q 019059 241 LKAPI--QELPGHT-HWTWAVCCNPEYDGFILSAGT---DSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYE 314 (346)
Q Consensus 241 ~~~~~--~~~~~~~-~~v~~v~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
...+. ... ... ..|..+..|+|| ..++.... .++|.|=-+........ ....+...-....
T Consensus 441 ~G~~~~V~~~-~l~g~~I~~lrvSrDG-~RvAvv~~~~g~~~v~va~V~R~~~G~~-----------~l~~~~~l~~~l~ 507 (599)
T PRK13613 441 DGEPVEVRTP-ELDGHRVVAVRVARDG-VRVALIVEKDGRRSLQIGRIVRDAKAVV-----------SVEEFRSLAPELE 507 (599)
T ss_pred CCcEEEeecc-ccCCCEeEEEEECCCc-cEEEEEEecCCCcEEEEEEEEeCCCCcE-----------EeeccEEeccCCC
Confidence 12222 111 122 379999999999 55544332 24565554432100000 0011111112223
Q ss_pred ceeeEEEeCCCCCcEEEEe
Q 019059 315 DSVYGLAWSSREPWIFASL 333 (346)
Q Consensus 315 ~~v~~~~~~~~~~~~l~s~ 333 (346)
.+.+++|..++. +++.+
T Consensus 508 -~v~~~~W~~~~s-L~Vlg 524 (599)
T PRK13613 508 -DVTDMSWAGDSQ-LVVLG 524 (599)
T ss_pred -ccceeEEcCCCE-EEEEe
Confidence 489999999886 65544
No 484
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=77.99 E-value=81 Score=31.78 Aligned_cols=140 Identities=15% Similarity=0.194 Sum_probs=72.2
Q ss_pred ceEEEEecCcccCCCCCccc-eeeee--eeccCCceEEEEeecCCCCcEEEEecCCeEEEEEcCCCCCCceeeecccCCC
Q 019059 91 YGAAIWQIPELYGQLNSPQL-ERIAA--LDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQSSGM 167 (346)
Q Consensus 91 ~~i~vw~~~~~~~~~~~~~~-~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 167 (346)
|.+.|+|+-+-.++...|.. ..++. .+..+++|..++=. +|. ++.+ ....|.+|+++......-...-..
T Consensus 1065 Gr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~--l~~~-~GqKI~v~~l~r~~~ligVaFiD~--- 1137 (1366)
T KOG1896|consen 1065 GRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGH--LLSS-QGQKIIVRKLDRDSELIGVAFIDL--- 1137 (1366)
T ss_pred ccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccE--EEEc-cCcEEEEEEeccCCcceeeEEecc---
Confidence 67999998642222211111 11111 13456778777643 454 4444 457999999954432222211111
Q ss_pred ceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCC-ccceeeccc----eeEEEeCCCCCcE-EEEecCCCeEEEEEcc
Q 019059 168 LHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMG-KTNSIEHAH----VRNVDYDTKKKHL-LVTAADESGIHLWDLR 239 (346)
Q Consensus 168 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~----v~~~~~~~~~~~~-l~~~~~dg~i~i~d~~ 239 (346)
+++-....--.++|+++.--..|.+.-..... .+..+.... +.++.|--+|..+ ++++..++.|++|-..
T Consensus 1138 --~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1138 --PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred --ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 22222222224555555544555555444322 222222222 8888888777654 6778889999888654
No 485
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=77.72 E-value=45 Score=28.71 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=53.1
Q ss_pred eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceee--ccc----eeEEEeCCCCCcEEEE-----------------
Q 019059 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIE--HAH----VRNVDYDTKKKHLLVT----------------- 226 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~----v~~~~~~~~~~~~l~~----------------- 226 (346)
...+++|...+..++.+..=--+..-+...+....... .+. .+.+..+++|. ++++
T Consensus 116 RPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~ 194 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAALE 194 (376)
T ss_pred CcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeeec
Confidence 56788999888667666432223333444333111111 111 56666666554 3333
Q ss_pred ecCCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEEe
Q 019059 227 AADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSA 271 (346)
Q Consensus 227 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s~ 271 (346)
+..+|.+.-||..+ +..+.+...-.-.+.++.||++ .+++.+
T Consensus 195 g~~~GRl~~YD~~t--K~~~VLld~L~F~NGlaLS~d~-sfvl~~ 236 (376)
T KOG1520|consen 195 GDPTGRLFRYDPST--KVTKVLLDGLYFPNGLALSPDG-SFVLVA 236 (376)
T ss_pred CCCccceEEecCcc--cchhhhhhcccccccccCCCCC-CEEEEE
Confidence 23456666666654 2344444444566889999999 555544
No 486
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=77.66 E-value=40 Score=28.00 Aligned_cols=92 Identities=13% Similarity=0.177 Sum_probs=54.2
Q ss_pred CeEEEEEccCCCccceee--ccceeEEEeCCCCCcEEEEec------CCCeEEEEEcccCCcceeeecC-----CCcceE
Q 019059 190 SSVQFWDLRSMGKTNSIE--HAHVRNVDYDTKKKHLLVTAA------DESGIHLWDLRMLKAPIQELPG-----HTHWTW 256 (346)
Q Consensus 190 ~~i~i~d~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-----~~~~v~ 256 (346)
..|++||..+.+-...-. .+.|+++.|..+.. +++.|. ....+..||..+. ....+.. -.++|.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCCCcEE
Confidence 358999988765332111 13399999986665 777764 3456888998752 3444443 236787
Q ss_pred EEEeCC-CCCcEEEEec-CCC--eEEEEecCC
Q 019059 257 AVCCNP-EYDGFILSAG-TDS--TVNLWLVST 284 (346)
Q Consensus 257 ~v~~~~-~~~~~l~s~~-~d~--~i~iwd~~~ 284 (346)
.+.+.. ++..+.+.|. .++ .|..||=..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 777643 3324444443 233 566676554
No 487
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.24 E-value=54 Score=29.38 Aligned_cols=107 Identities=11% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCceEEEEeecCCCCcEEEEec-CCeEEEEEcCCCCCCceeeec-c-cCCCceeeEEEEeCCCC------CcEEEEe---
Q 019059 120 VGKINCVLWWSSGRHDKLVSID-EENIFLWSLDCSNKNAQVQSK-Q-SSGMLHYLSGGAWDPHD------VNAVAAT--- 187 (346)
Q Consensus 120 ~~~i~~~~~~~~~~~~~~~~~~-d~~i~vwd~~~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~------~~l~~~~--- 187 (346)
-..-+.|+|.|+++ ++++-. .|.|++++..+.......... . ...-...+..++++|+- .++++..
T Consensus 29 L~~Pw~maflPDG~--llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 29 LNKPWALLWGPDNQ--LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCceEEEEcCCCe--EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 34568999999997 555544 599999986543221111011 0 00113468999999874 2344442
Q ss_pred -------cCCeEEEEEccCC--Cc--ccee-e-----ccc-eeEEEeCCCCCcEEEEecC
Q 019059 188 -------CESSVQFWDLRSM--GK--TNSI-E-----HAH-VRNVDYDTKKKHLLVTAAD 229 (346)
Q Consensus 188 -------~d~~i~i~d~~~~--~~--~~~~-~-----~~~-v~~~~~~~~~~~~l~~~~~ 229 (346)
....|.-|.+... .. ...+ . ..| -..|+|.|++. ++++.++
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD 165 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGE 165 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECC
Confidence 1234544554321 11 1111 1 124 66888999997 6554443
No 488
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=77.21 E-value=74 Score=30.88 Aligned_cols=194 Identities=15% Similarity=0.119 Sum_probs=102.3
Q ss_pred CCCCeEEEEEecCCCCeEEEe-e----eeccccceEE--eeecCCCCceEEEEeecCCcceEEEEecCcccC----CCCC
Q 019059 39 KEENEVHLLRLSSGGTELICE-G----LFSHPNEIWD--LSSCPFDQRIFSTVFSTGESYGAAIWQIPELYG----QLNS 107 (346)
Q Consensus 39 ~~~~~i~~~~~~~~~~~~~~~-~----~~~h~~~v~~--~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~----~~~~ 107 (346)
..+|.+.+|-...+....... . +..-...|+. +++..+|+.+++++++ ...+.|++|.+.-..+ ..+.
T Consensus 69 t~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s-~~s~~l~~yrv~I~W~~~~~~~d~ 147 (753)
T PF11635_consen 69 TRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYS-SLSKQLRFYRVQIDWNAKPQQIDP 147 (753)
T ss_pred ecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEcc-ccCCceEEEEEEEeccCcCccCCC
Confidence 456788888775443322222 1 1112244554 4545667667766532 2345788776543222 0011
Q ss_pred ---ccceeeeeeec-----------------cCCceEEEEeec------CCCCcEEEEe-c---CCeEEEEEcCCCCCCc
Q 019059 108 ---PQLERIAALDA-----------------HVGKINCVLWWS------SGRHDKLVSI-D---EENIFLWSLDCSNKNA 157 (346)
Q Consensus 108 ---~~~~~~~~~~~-----------------~~~~i~~~~~~~------~~~~~~~~~~-~---d~~i~vwd~~~~~~~~ 157 (346)
|.......... .-..++.+.|-+ ....++++.. . ...|..|.+.......
T Consensus 148 q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~l 227 (753)
T PF11635_consen 148 QKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPL 227 (753)
T ss_pred CcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCccc
Confidence 22222111111 112566777765 2333343332 1 3578999987543211
Q ss_pred eeeec---------------------ccCCCceeeEEEEeCCCCCcEEEEecCCeEEEEEccCCCcccee----ec----
Q 019059 158 QVQSK---------------------QSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSI----EH---- 208 (346)
Q Consensus 158 ~~~~~---------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~---- 208 (346)
..... ........|.++.-..-+..++.+-.||+|.++|..+.+.+... ..
T Consensus 228 h~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v 307 (753)
T PF11635_consen 228 HPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTV 307 (753)
T ss_pred chhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccc
Confidence 11100 00111235666666666777888889999999998877544333 10
Q ss_pred ------cc-------eeEEEeCCCCCcEEEEecCCCeEE
Q 019059 209 ------AH-------VRNVDYDTKKKHLLVTAADESGIH 234 (346)
Q Consensus 209 ------~~-------v~~~~~~~~~~~~l~~~~~dg~i~ 234 (346)
+. +..++|+|.+. .++.-..+|.+.
T Consensus 308 ~s~~~~Gf~fp~~~~~~~vafSPt~c-~~v~~~~~~~~~ 345 (753)
T PF11635_consen 308 TSLFQAGFHFPCIQPPLHVAFSPTMC-SLVQIDEDGKTK 345 (753)
T ss_pred ccccccccccccCCCCceEEECcccc-eEEEEecCCCce
Confidence 11 33578999997 777777888765
No 489
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=76.66 E-value=13 Score=24.36 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.6
Q ss_pred eeEEEeCCCCCcEEEEeecCCeEEEeeecC
Q 019059 317 VYGLAWSSREPWIFASLSYDGRVRNHMLEK 346 (346)
Q Consensus 317 v~~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 346 (346)
.+.|.++|+++.+.++....+.|++|..++
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 578999999987788888899999998764
No 490
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=76.33 E-value=16 Score=23.94 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=32.4
Q ss_pred CeEEEEEccCCCccceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEccc
Q 019059 190 SSVQFWDLRSMGKTNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRM 240 (346)
Q Consensus 190 ~~i~i~d~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 240 (346)
+.|..||... .+....+- .+.|.++|+++.++++....+.|++|..+.
T Consensus 36 ~~Vvyyd~~~---~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKE---VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCE---eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4566666432 22222222 889999999996777777788999998653
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=74.37 E-value=62 Score=30.74 Aligned_cols=187 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred eEEeeecCCCCceEEEEeecCCcceEEEEecCcccCCCCCccceeeeeeeccCCceEEEEeecCCCCcEEEEecCCeEEE
Q 019059 68 IWDLSSCPFDQRIFSTVFSTGESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFL 147 (346)
Q Consensus 68 v~~~~~~~~~~~l~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~i~v 147 (346)
+.++.-+|.++.++.+ ..|+.|+++++. +....... ....+-..+.|...| +++...|..+.-
T Consensus 17 ~~aiqshp~~~s~v~~----~~d~si~lfn~~---------~r~qski~-~~~~p~~nlv~tnhg---l~~~tsdrr~la 79 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLA----HQDGSIILFNFI---------PRRQSKIC-EEAKPKENLVFTNHG---LVTATSDRRALA 79 (1636)
T ss_pred eeeeeecCCCceEEEE----ecCCcEEEEeec---------ccchhhhh-hhcCCccceeeeccc---eEEEeccchhhe
Q ss_pred EEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecCCe-------------------------EEEEEccCCCc
Q 019059 148 WSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESS-------------------------VQFWDLRSMGK 202 (346)
Q Consensus 148 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------------------i~i~d~~~~~~ 202 (346)
|.-+.-.+...-....... ...++...|..+.++-.-..|. +.+-|+.++..
T Consensus 80 ~~~dgvvqqqfdyndqsek---efss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~tr 156 (1636)
T KOG3616|consen 80 WKEDGVVQQQFDYNDQSEK---EFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTR 156 (1636)
T ss_pred eeccCcchhhccccchhhh---hccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCce
Q ss_pred cceeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecCCC--------cceEEEEeCCCCCcEEEEec
Q 019059 203 TNSIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPGHT--------HWTWAVCCNPEYDGFILSAG 272 (346)
Q Consensus 203 ~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~v~~v~~~~~~~~~l~s~~ 272 (346)
...+.... |..+..--..+++++-.+. +|.+-|+.+.+-.-...++.. ..-.|+-|+... -.++--+
T Consensus 157 t~l~s~~g~aidelkilgkdryli~~ts~--siii~d~es~rfsei~wqgsgg~ekfffd~~n~cli~nage-ltlveyg 233 (1636)
T KOG3616|consen 157 TNLISHKGLAIDELKILGKDRYLIAHTSE--SIIIADLESNRFSEIAWQGSGGHEKFFFDFENCCLIFNAGE-LTLVEYG 233 (1636)
T ss_pred EeeeecCCcchhhhhhccccceEEeeccc--cEEEeecccchhhhhhcccCCCcceeeeecCcEEEEEecCe-eEEEEec
Q ss_pred CCCeE
Q 019059 273 TDSTV 277 (346)
Q Consensus 273 ~d~~i 277 (346)
.|+++
T Consensus 234 ~d~sl 238 (1636)
T KOG3616|consen 234 NDDSL 238 (1636)
T ss_pred CCCcc
No 492
>PLN02193 nitrile-specifier protein
Probab=73.66 E-value=70 Score=28.94 Aligned_cols=193 Identities=7% Similarity=-0.081 Sum_probs=0.0
Q ss_pred CCCcEEEEecC-------CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC-----CeEEEEEccC
Q 019059 132 GRHDKLVSIDE-------ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE-----SSVQFWDLRS 199 (346)
Q Consensus 132 ~~~~~~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~ 199 (346)
+..+++.++.+ ..+.+||+.+.+ ......................-++...+.++.+ ..+..||+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~-W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRT-WSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCE-EEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Q ss_pred CCccceeec---cc--eeEEEeCCCCCcEEEEecCCCe-----EEEEEcccCCcceeeec----CCCcceEEEEeCCCCC
Q 019059 200 MGKTNSIEH---AH--VRNVDYDTKKKHLLVTAADESG-----IHLWDLRMLKAPIQELP----GHTHWTWAVCCNPEYD 265 (346)
Q Consensus 200 ~~~~~~~~~---~~--v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~----~~~~~v~~v~~~~~~~ 265 (346)
.+-...... +. -...+..-++. +++.|+.++. +..||+. ......+. .....-......-++
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~~~~~-iYv~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~R~~~~~~~~~g- 329 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAADEEN-VYVFGGVSATARLKTLDSYNIV--DKKWFHCSTPGDSFSIRGGAGLEVVQG- 329 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEEECCE-EEEECCCCCCCCcceEEEEECC--CCEEEeCCCCCCCCCCCCCcEEEEECC-
Q ss_pred cEEEEecCC----CeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEeCCCCCcEEEEeecCC----
Q 019059 266 GFILSAGTD----STVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAWSSREPWIFASLSYDG---- 337 (346)
Q Consensus 266 ~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---- 337 (346)
.+++.++.+ ..+.+||+.+ .....+........+-.......-+..+++.|+...
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t-----------------~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~ 392 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQ-----------------DKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPL 392 (470)
T ss_pred cEEEEECCCCCccCceEEEECCC-----------------CEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccc
Q ss_pred ----------eEEEeeecC
Q 019059 338 ----------RVRNHMLEK 346 (346)
Q Consensus 338 ----------~v~vw~~~~ 346 (346)
.+.+||++.
T Consensus 393 ~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 393 AHVGPGQLTDGTFALDTET 411 (470)
T ss_pred cccCccceeccEEEEEcCc
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=73.59 E-value=51 Score=27.35 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=35.0
Q ss_pred CeEEEEEcccCCcceeee-cCCCcceEEEEeCCCCCcEEEEec------CCCeEEEEecCC
Q 019059 231 SGIHLWDLRMLKAPIQEL-PGHTHWTWAVCCNPEYDGFILSAG------TDSTVNLWLVST 284 (346)
Q Consensus 231 g~i~i~d~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~s~~------~d~~i~iwd~~~ 284 (346)
..|.+||... .+ ...+ .+-.+.|+.+.|..+. ++++.|. ....+..||...
T Consensus 16 ~~lC~yd~~~-~q-W~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 16 PGLCLYDTDN-SQ-WSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CEEEEEECCC-CE-eecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCC
Confidence 4699999775 32 2222 2345789999998665 7777765 345788899886
No 494
>PRK13684 Ycf48-like protein; Provisional
Probab=73.43 E-value=58 Score=27.87 Aligned_cols=149 Identities=9% Similarity=-0.011 Sum_probs=76.2
Q ss_pred eeEEEEeCCCCCcEEEEecCCeEEEEEccCCCccceeec--cc-eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCccee
Q 019059 170 YLSGGAWDPHDVNAVAATCESSVQFWDLRSMGKTNSIEH--AH-VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQ 246 (346)
Q Consensus 170 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 246 (346)
.+..+.+.|++..+ ..+..|.+..-....++.-..... .. ++++.+.++++ +++++ ..|.+.+=.... ...-.
T Consensus 174 ~~~~i~~~~~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~-G~sW~ 249 (334)
T PRK13684 174 VVRNLRRSPDGKYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDD-LESWS 249 (334)
T ss_pred eEEEEEECCCCeEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCC-CCccc
Confidence 68889999987554 444556554321111221111221 22 89999999987 66555 457664322221 21111
Q ss_pred eecC----CCcceEEEEeCCCCCcEEEEecCCCeEEEEecCCCCCCCCCcccccCCccccccccccccccccceeeEEEe
Q 019059 247 ELPG----HTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVSTSNHDELPSESLVESPNQRANSLLNSYSDYEDSVYGLAW 322 (346)
Q Consensus 247 ~~~~----~~~~v~~v~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 322 (346)
.... ....+..+.+.|++ ..++ ++.+|.+. .....+. ..+.+.....-....+.+.|
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~-~~~~-~G~~G~v~-~S~d~G~----------------tW~~~~~~~~~~~~~~~~~~ 310 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPG-EIWA-GGGNGTLL-VSKDGGK----------------TWEKDPVGEEVPSNFYKIVF 310 (334)
T ss_pred cccCCccccccceeeEEEcCCC-CEEE-EcCCCeEE-EeCCCCC----------------CCeECCcCCCCCcceEEEEE
Confidence 1111 12357788899877 5554 45567554 3333200 01111111112234777887
Q ss_pred CCCCCcEEEEeecCCeEEEee
Q 019059 323 SSREPWIFASLSYDGRVRNHM 343 (346)
Q Consensus 323 ~~~~~~~l~s~~~d~~v~vw~ 343 (346)
..++. .++ .+..|.|.-|+
T Consensus 311 ~~~~~-~~~-~G~~G~il~~~ 329 (334)
T PRK13684 311 LDPEK-GFV-LGQRGVLLRYV 329 (334)
T ss_pred eCCCc-eEE-ECCCceEEEec
Confidence 76665 444 55578877664
No 495
>PHA02790 Kelch-like protein; Provisional
Probab=73.30 E-value=73 Score=28.94 Aligned_cols=137 Identities=8% Similarity=-0.035 Sum_probs=63.9
Q ss_pred CCCCcEEEEecC--CeEEEEEcCCCCCCceeeecccCCCceeeEEEEeCCCCCcEEEEecC---CeEEEEEccCCCccc-
Q 019059 131 SGRHDKLVSIDE--ENIFLWSLDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCE---SSVQFWDLRSMGKTN- 204 (346)
Q Consensus 131 ~~~~~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~- 204 (346)
++. ++++||.+ ..+..||..+++ ..... ...........+.. ++...+.||.+ ..+..||.++.+-..
T Consensus 318 ~~~-iYviGG~~~~~sve~ydp~~n~--W~~~~-~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 318 NNK-LYVVGGLPNPTSVERWFHGDAA--WVNMP-SLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred CCE-EEEECCcCCCCceEEEECCCCe--EEECC-CCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 444 56676643 457788875432 11111 11111112222222 45666666643 357788887654222
Q ss_pred -eeeccc--eeEEEeCCCCCcEEEEecCCCeEEEEEcccCCcceeeecC---CCcceEEEEeCCCCCcEEEEecCC----
Q 019059 205 -SIEHAH--VRNVDYDTKKKHLLVTAADESGIHLWDLRMLKAPIQELPG---HTHWTWAVCCNPEYDGFILSAGTD---- 274 (346)
Q Consensus 205 -~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~s~~~d---- 274 (346)
.+..+. ...++ -++. +++.|+ .+.+||.++ . .-..+.. .......+. -++ ...+.||.+
T Consensus 392 ~~m~~~r~~~~~~~--~~~~-IYv~GG---~~e~ydp~~-~-~W~~~~~m~~~r~~~~~~v--~~~-~IYviGG~~~~~~ 460 (480)
T PHA02790 392 PSTYYPHYKSCALV--FGRR-LFLVGR---NAEFYCESS-N-TWTLIDDPIYPRDNPELII--VDN-KLLLIGGFYRGSY 460 (480)
T ss_pred CCCCCccccceEEE--ECCE-EEEECC---ceEEecCCC-C-cEeEcCCCCCCccccEEEE--ECC-EEEEECCcCCCcc
Confidence 111111 22222 2344 666664 467888764 2 1222211 111222222 245 677777754
Q ss_pred -CeEEEEecCC
Q 019059 275 -STVNLWLVST 284 (346)
Q Consensus 275 -~~i~iwd~~~ 284 (346)
.++..||..+
T Consensus 461 ~~~ve~Yd~~~ 471 (480)
T PHA02790 461 IDTIEVYNNRT 471 (480)
T ss_pred cceEEEEECCC
Confidence 3577777775
No 496
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=73.13 E-value=9.4 Score=18.64 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=11.3
Q ss_pred eEEEeCCCCCcEEEEecCCCeEEE
Q 019059 212 RNVDYDTKKKHLLVTAADESGIHL 235 (346)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~dg~i~i 235 (346)
..++.+++|. ++++-.....|.+
T Consensus 5 ~gvav~~~g~-i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGN-IYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSE-EEEEECCCTEEEE
T ss_pred cEEEEeCCCC-EEEEECCCCEEEE
Confidence 4455555554 4444444444443
No 497
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=73.11 E-value=57 Score=27.64 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=46.8
Q ss_pred CCCcEEEEecC-----CeEEEEEccCCCcc---ce---eeccc-eeEEEeCCCCCcEEEEecC-----CCeEEEEEcccC
Q 019059 179 HDVNAVAATCE-----SSVQFWDLRSMGKT---NS---IEHAH-VRNVDYDTKKKHLLVTAAD-----ESGIHLWDLRML 241 (346)
Q Consensus 179 ~~~~l~~~~~d-----~~i~i~d~~~~~~~---~~---~~~~~-v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~ 241 (346)
++..++.|+.+ ..+..+|+.+.+.. .. +.... -.+++.. ++. +++.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~-iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGT-LYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCE-EEEEeCcCCCccCceEEEEcCCCC
Confidence 34555566543 35777787765531 11 11111 1122222 344 6666664 235788887752
Q ss_pred CcceeeecC--CCcceEEEEeCCCCCcEEEEecCCC----eEEEEecCC
Q 019059 242 KAPIQELPG--HTHWTWAVCCNPEYDGFILSAGTDS----TVNLWLVST 284 (346)
Q Consensus 242 ~~~~~~~~~--~~~~v~~v~~~~~~~~~l~s~~~d~----~i~iwd~~~ 284 (346)
. -..+.. ............++ .+.+.|+.++ .+.+||..+
T Consensus 150 ~--W~~~~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 150 E--WFELPDFPGEPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred C--eeECCCCCCCCCCcceEEEECC-EEEEEcCCCCccccceEEEecCC
Confidence 1 222221 01111112222345 6677777654 245777765
No 498
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.32 E-value=7.4 Score=19.55 Aligned_cols=24 Identities=4% Similarity=0.012 Sum_probs=19.2
Q ss_pred cEEEEecCCeEEEEEccCCCccce
Q 019059 182 NAVAATCESSVQFWDLRSMGKTNS 205 (346)
Q Consensus 182 ~l~~~~~d~~i~i~d~~~~~~~~~ 205 (346)
.+++++.++.+..+|.++++..-.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577788899999999988876543
No 499
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=71.93 E-value=44 Score=32.49 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=50.6
Q ss_pred CCeEEEEEccCCCccce-eeccc-eeEEEeCCCCCcEEEEecCCC-----eEEEEEcccCCcceeeecCCCcceEEEEeC
Q 019059 189 ESSVQFWDLRSMGKTNS-IEHAH-VRNVDYDTKKKHLLVTAADES-----GIHLWDLRMLKAPIQELPGHTHWTWAVCCN 261 (346)
Q Consensus 189 d~~i~i~d~~~~~~~~~-~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~ 261 (346)
.+.|.+-|......... +.... +.+.+|+|||+.+..+.+.++ .|++-|+++...-+..+.-....|-.-...
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~ 407 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVL 407 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEec
Confidence 35788888776554433 44333 999999999995555244433 488889887655444555445566655666
Q ss_pred CCCCcEE
Q 019059 262 PEYDGFI 268 (346)
Q Consensus 262 ~~~~~~l 268 (346)
++|...|
T Consensus 408 e~gdt~i 414 (912)
T TIGR02171 408 ENGDTVI 414 (912)
T ss_pred CCCCeEE
Confidence 6664444
No 500
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=71.36 E-value=42 Score=32.61 Aligned_cols=54 Identities=9% Similarity=-0.021 Sum_probs=36.7
Q ss_pred CCCeEEEEEcccCCcceeeecCCCcceEEEEeCCCCCcEEEE-ecCCC-----eEEEEecCC
Q 019059 229 DESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILS-AGTDS-----TVNLWLVST 284 (346)
Q Consensus 229 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~s-~~~d~-----~i~iwd~~~ 284 (346)
..+.+.+-|..... +...-..+..+|.+..||||| +.|+- .+.++ .|++-|+++
T Consensus 327 ~~~~L~~~D~dG~n-~~~ve~~~~~~i~sP~~SPDG-~~vAY~ts~e~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 327 VTGNLAYIDYTKGA-SRAVEIEDTISVYHPDISPDG-KKVAFCTGIEGLPGKSSVYVRNLNA 386 (912)
T ss_pred CCCeEEEEecCCCC-ceEEEecCCCceecCcCCCCC-CEEEEEEeecCCCCCceEEEEehhc
Confidence 33578888887533 332213468899999999999 66655 44444 588888887
Done!