BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019060
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/313 (63%), Positives = 240/313 (76%), Gaps = 1/313 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 7 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 65
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 66 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 125
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 126 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 185
Query: 214 DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGE 273
+DGRVVSNFI QA++GEPLTV G+QTR+F YVSD+V+GL+ LM + P+N+GNP E
Sbjct: 186 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 245
Query: 274 FTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPLME 333
T+LE A+ +K L+ EI + DDP++RKPDI KA +LGWEP + L +GL
Sbjct: 246 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAI 305
Query: 334 DDFRLRLAVPRKN 346
FR L N
Sbjct: 306 HYFRKELEYQANN 318
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/328 (60%), Positives = 239/328 (72%), Gaps = 6/328 (1%)
Query: 24 RFSKFFQSNM-----RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI 78
R + +FQ + RIL+TGGAGF+GSHL DKL + +EV VVDN+FTG K N+ WI
Sbjct: 14 RENLYFQGHXEKDRKRILITGGAGFVGSHLTDKLXX-DGHEVTVVDNFFTGRKRNVEHWI 72
Query: 79 GHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
GH FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN IGTLN LGLAKRV
Sbjct: 73 GHENFELINHDVVEPLYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRV 132
Query: 139 GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
GAR+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET + Y +Q G+E+
Sbjct: 133 GARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEV 192
Query: 199 RIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLM 258
R+ARIFNT+GPR + +DGRVVSNFI QA++GEPLTV G+QTR+F YVSD+V+GL+ L
Sbjct: 193 RVARIFNTFGPRXHXNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALX 252
Query: 259 EGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELLG 318
+ P+N+GNP E T+LE A+ +K L+ EI + DDP++RKPDI KA LG
Sbjct: 253 NSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLXLG 312
Query: 319 WEPKIKLRDGLPLMEDDFRLRLAVPRKN 346
WEP + L +GL FR L N
Sbjct: 313 WEPVVPLEEGLNKAIHYFRKELEYQANN 340
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 159/327 (48%), Gaps = 36/327 (11%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
MRI+VTGGAGFIGSHLVDKL+E EV+VVDN +G ++ + +P EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKD 54
Query: 93 PLL---IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTS 148
I+ D ++H A P+ NV+ T N+L A++ G R ++ S+S
Sbjct: 55 YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSS 114
Query: 149 EVYGDPLV--HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
VYGD V P++E Y PI S Y K E + Y R G+ R N
Sbjct: 115 TVYGDADVIPTPEEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANV 167
Query: 207 YGPRMNIDDGRVVSNFIAQAIRGEP--LTVQAPGTQTRSFCYVSDMVDGLIRLMEG--EN 262
GPR+ V+ +FI + +R P L V GTQ +S+ YV D V+ + + E
Sbjct: 168 VGPRLRHG---VIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEM 223
Query: 263 TGP---INIGNPGEFTMLELAENVKELINPNVEITMVENTPD------DPRQRKPDITKA 313
P +N+GN +L++A+ V E++ EI +V +TPD D + +TK
Sbjct: 224 DAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKL 283
Query: 314 TELLGWEPKIKLRDGLPLMEDDFRLRL 340
+L GW P + + + +D L
Sbjct: 284 MKLTGWRPTMTSAEAVKKTAEDLAKEL 310
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 155/326 (47%), Gaps = 38/326 (11%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD--NYFTGSKDNLRKWIGHPRFELIRHDV 90
MRI+VTGGAGFIGSHLVDKL+E EV+VVD TG L H R +L D
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDIVQRDTGGSAEL-----HVR-DL--KDY 51
Query: 91 TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 149
+ I+ D ++H A P+ NV+ T N+L A++ G R ++ S+S
Sbjct: 52 SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 111
Query: 150 VYGDPLV--HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTY 207
VYGD V P++E Y PI S Y K E + Y R G+ R N
Sbjct: 112 VYGDADVIPTPEEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANVV 164
Query: 208 GPRMNIDDGRVVSNFIAQAIRGEP--LTVQAPGTQTRSFCYVSDMVDGLIRLMEG--ENT 263
GPR+ V+ +FI + +R P L V GTQ +S+ YV D V+ + + E
Sbjct: 165 GPRLRHG---VIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMD 220
Query: 264 GP---INIGNPGEFTMLELAENVKELINPNVEITMVENTPD------DPRQRKPDITKAT 314
P +N+GN +L++A+ V E++ EI +V +TPD D + +TK
Sbjct: 221 APFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLM 280
Query: 315 ELLGWEPKIKLRDGLPLMEDDFRLRL 340
+L GW P + + + +D L
Sbjct: 281 KLTGWRPTMTSAEAVKKTAEDLAKEL 306
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 159/340 (46%), Gaps = 42/340 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
MR+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D++
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISI 56
Query: 92 -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
E + + D + L A+PI Y NP++ + + L ++ + RI+ S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 147 TSEVYGDPLVHPQDESYWG-NVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
TSEVYG DE + V P+ R Y K++ + +++ Y + G++ + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176
Query: 205 NTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLM 258
N GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++
Sbjct: 177 NWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236
Query: 259 EGENTGP------INIGNP-GEFTMLELAEN---------VKELINPNVEITMVENTP-- 300
EN G INIGNP E ++ EL E ++ P +VE++
Sbjct: 237 --ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYY 294
Query: 301 ----DDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDF 336
D RKP I A L WEPKI +++ + D F
Sbjct: 295 GKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 334
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 42/339 (12%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D++
Sbjct: 15 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 71 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 148 SEVYGDPLVHPQDESYWG-NVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
SEVYG DE + V P+ R Y K++ + +++ Y + G++ + R FN
Sbjct: 131 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 190
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++
Sbjct: 191 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII- 249
Query: 260 GENTGP------INIGNP-GEFTMLELAEN---------VKELINPNVEITMVENTP--- 300
EN G INIGNP E ++ EL E ++ P +VE++
Sbjct: 250 -ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 308
Query: 301 ---DDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDF 336
D RKP I A L WEPKI +++ + D F
Sbjct: 309 KGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 347
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 42/339 (12%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D++
Sbjct: 317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 372
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 373 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 432
Query: 148 SEVYGDPLVHPQDESYWG-NVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
SEVYG DE + V P+ R Y K++ + +++ Y + G++ + R FN
Sbjct: 433 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 492
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++
Sbjct: 493 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII- 551
Query: 260 GENTGP------INIGNP-GEFTMLELAEN---------VKELINPNVEITMVENTP--- 300
EN G INIGNP E ++ EL E ++ P +VE++
Sbjct: 552 -ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 610
Query: 301 ---DDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDF 336
D RKP I A L WEPKI +++ + D F
Sbjct: 611 KGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 649
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 42/339 (12%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D++
Sbjct: 15 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 71 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 148 SEVYGDPLVHPQDESYWG-NVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
+EVYG DE + V P+ R Y K++ + +++ Y + G++ + R FN
Sbjct: 131 AEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 190
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++
Sbjct: 191 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII- 249
Query: 260 GENTGP------INIGNP-GEFTMLELAEN---------VKELINPNVEITMVENTP--- 300
EN G INIGNP E ++ EL E ++ P +VE++
Sbjct: 250 -ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 308
Query: 301 ---DDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDF 336
D RKP I A L WEPKI +++ + D F
Sbjct: 309 KGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 347
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 42/339 (12%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D++
Sbjct: 15 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 71 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 148 SEVYGDPLVHPQDESYWG-NVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
SEVYG DE + V P+ R Y K++ + +++ Y + G++ + R FN
Sbjct: 131 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 190
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++
Sbjct: 191 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII- 249
Query: 260 GENTGP------INIGNP-GEFTMLELAEN---------VKELINPNVEITMVENTP--- 300
EN G INIGNP E ++ EL E ++ P +VE++
Sbjct: 250 -ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 308
Query: 301 ---DDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDF 336
D KP I A L WEPKI +++ + D F
Sbjct: 309 KGYQDVEHEKPSIRNAHRCLDWEPKIDMQETIDETLDFF 347
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 159/348 (45%), Gaps = 45/348 (12%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
++L+ G GFIG HL +++E EV +D D L + H R D+T
Sbjct: 26 KVLILGVNGFIGHHLSKRILETTDWEVFGMDM----QTDRLGDLVKHERMHFFEGDITIN 81
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D I L A+P Y P++ + + L ++ A + G ++ ST
Sbjct: 82 KEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST 141
Query: 148 SEVYG---DPLVHPQDESY-WGNVN-PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
SEVYG D P + +G +N P + +C K++ + +++ Y + G+ + R
Sbjct: 142 SEVYGMCADEQFDPDASALTYGPINKPRWIYAC---SKQLMDRVIWGYGME-GLNFTLFR 197
Query: 203 IFNTYGPRMNI------DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIR 256
FN GP ++ RVV+ F+ +RGE +++ G+Q R+F YV D + L++
Sbjct: 198 PFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMK 257
Query: 257 LMEGEN---TGPI-NIGNP-GEFT-------MLELAENVKELINPNVEITMVENTP---- 300
++E N TG I NIGNP F+ MLELA E + + +VE T
Sbjct: 258 IIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYY 317
Query: 301 ----DDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDFRLRLAVPR 344
D + R P I + LGW P+ D L + + +R +A R
Sbjct: 318 GNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVADAR 365
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 42/339 (12%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D++
Sbjct: 15 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 71 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 148 SEVYGDPLVHPQDESYWG-NVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
SEVYG DE + V P+ R Y K++ + +++ Y + G++ + R FN
Sbjct: 131 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 190
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++
Sbjct: 191 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII- 249
Query: 260 GENTGP------INIGNP-GEFTMLELAEN---------VKELINPNVEITMVENTP--- 300
EN G INIGNP E ++ EL E ++ P +VE++
Sbjct: 250 -ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 308
Query: 301 ---DDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDF 336
D KP I A L WEPKI +++ + D F
Sbjct: 309 KGYQDVEHYKPSIRNAHRCLDWEPKIDMQETIDETLDFF 347
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 42/339 (12%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D++
Sbjct: 15 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 71 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 148 SEVYGDPLVHPQDESYWG-NVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
SEVYG DE + V P+ R Y K++ + +++ Y + G++ + R FN
Sbjct: 131 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 190
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++
Sbjct: 191 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII- 249
Query: 260 GENTGP------INIGNP-GEFTMLELAEN---------VKELINPNVEITMVENTP--- 300
EN G INIGNP E ++ EL E ++ P +VE++
Sbjct: 250 -ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 308
Query: 301 ---DDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDF 336
D KP I A L WEPKI +++ + D F
Sbjct: 309 KGYQDVEHMKPSIRNAHRCLDWEPKIDMQETIDETLDFF 347
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 141/311 (45%), Gaps = 21/311 (6%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
MR+LVTGGAGFIGSH V +L+ +EVIV+D+ + G++ NL PR +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 87 RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
D+ + L+ VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
R++ ST EVYG D W +P+ S Y K ++ + YHR +G+++RI
Sbjct: 121 RVVHVSTDEVYGSI-----DSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 201 ARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEG 260
R N YGP + + +++ F+ + G L + G R + + D G+ ++ G
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233
Query: 261 ENTGPI-NIGNPGEFTMLELAENVKELINPN-VEITMVENTPDDPRQRKPDITKATELLG 318
G I +IG E T EL + + + + + V + + D K LG
Sbjct: 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293
Query: 319 WEPKIKLRDGL 329
+ P++ DGL
Sbjct: 294 YRPQVSFADGL 304
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 142/311 (45%), Gaps = 21/311 (6%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
MR+LVTGGAGFIGSH V +L+ +EVIV+D+ + G++ NL PR +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 87 RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
D+ + L+ VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
R++ ST++VYG D W +P+ S Y K ++ + YHR +G+++RI
Sbjct: 121 RVVHVSTNQVYGSI-----DSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 201 ARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEG 260
R N YGP + + +++ F+ + G L + G R + + D G+ ++ G
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233
Query: 261 ENTGPI-NIGNPGEFTMLELAENVKELINPN-VEITMVENTPDDPRQRKPDITKATELLG 318
G I +IG E T EL + + + + + V + + D K LG
Sbjct: 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293
Query: 319 WEPKIKLRDGL 329
+ P++ DGL
Sbjct: 294 YRPQVSFADGL 304
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 148/299 (49%), Gaps = 28/299 (9%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
I+VTGGAGFIGSH+VDKL +E NE++V+DN +G+++ + + + +L D+ +
Sbjct: 4 IVVTGGAGFIGSHVVDKL--SESNEIVVIDNLSSGNEEFVNEAARLVKADLAADDIKD-Y 60
Query: 95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD 153
L ++++H+A NP + + NV+ T +L ++ G +RI+ TSTS VYG+
Sbjct: 61 LKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGE 120
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
V P E Y +PI S Y K E L+ Y ++ I R N G R
Sbjct: 121 AKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRST- 174
Query: 214 DDGRVVSNFIAQAIRG-EPLTVQAPGTQTRSFCYVSDMVDGLIRLMEG-ENTGPINIGNP 271
V+ +FI + R E L + G Q +S+ Y+SD VD ++ + G E NIG+
Sbjct: 175 --HGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIFNIGSE 232
Query: 272 GEFTMLELAENVKEL--INPNVEITMVENTPDDPRQRKPDI------TKATELLGWEPK 322
+ + +AE V E ++P T R K D+ + + LGW+P+
Sbjct: 233 DQIKVKRIAEIVCEELGLSPRFRFT------GGDRGWKGDVPVMLLSIEKLKRLGWKPR 285
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 147/333 (44%), Gaps = 24/333 (7%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
+N ++V GGAGF+GS+LV +L+E N+V VVDN + K N+ HP +
Sbjct: 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPD---HPAVRFSETSI 87
Query: 91 TEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM---LGLAKRVGARI 142
T+ L+ E D ++HLA ++P+ + N + TL + L KR+ +
Sbjct: 88 TDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVV 147
Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
+ + + V+ S Y K E YH+QH + AR
Sbjct: 148 YSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRAR 207
Query: 203 IFNTYGPRMNIDDGR-----------VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
N YGP + GR V FI +A++G PL ++ G TR F +V D+
Sbjct: 208 FQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVA 267
Query: 252 DGLIRL-MEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTP-DDPRQRKPD 309
+GLI +G G NI + E ++ +LA + E+ N E+ + P D+ +R
Sbjct: 268 NGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGS 327
Query: 310 ITKATELLGWEPKIKLRDGLPLMEDDFRLRLAV 342
KA LG+ + + DGL + + LAV
Sbjct: 328 PEKARRELGFSADVSIDDGLRKTIEWTKANLAV 360
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 146/309 (47%), Gaps = 18/309 (5%)
Query: 32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK-DNLRKWIGHPRFELIRHD 89
+M++LVTGG GFIGS+ + ++E + EVI +D GS NL+ PR+ ++ D
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 90 VTEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARI 142
V + L+ +VD + HLA + +P + +NVIGT +L +R R
Sbjct: 63 VADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
+ ST EVYGD L E+ + + S Y K ++ L+ + R + + I R
Sbjct: 123 VHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITR 177
Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGL-IRLMEGE 261
N YGP + +++ I +A G + + G R + YV D V + + L++GE
Sbjct: 178 CTNNYGPYQFPE--KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE 235
Query: 262 NTGPINIGNPGEFTMLELAENVKELINPNVE-ITMVENTPDDPRQRKPDITKATELLGWE 320
+ NI E T LE+ + + L+ E I +VE+ P + D K T L W
Sbjct: 236 SREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWR 295
Query: 321 PKIKLRDGL 329
PK +G+
Sbjct: 296 PKYTFDEGI 304
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 153/321 (47%), Gaps = 34/321 (10%)
Query: 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
L+TG AGFIGS+L++KL++ + VI +DN+ TG + NL +W RF I
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 84
Query: 87 RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E ++ VD + H A S +P+ T TN+ G LN+L AK +
Sbjct: 85 EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
++S YGD P+ E GN P+ S Y K V E Y R +G +
Sbjct: 145 SFTYAASSSTYGDHPALPKVEENIGN--PL---SPYAVTKYVNEIYAQVYARTYGFKTIG 199
Query: 201 ARIFNTYGPRM--NIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLM 258
R FN +G R N V+ + A ++G+ + + G +R FCY+ +++ I
Sbjct: 200 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSA 259
Query: 259 EGENTGPINIGNP--GEFTML-ELAENVKELIN-----PNVEITMVENTPDDPRQRKPDI 310
+++ NI N G+ T L EL+ + + +N + I E D R + D+
Sbjct: 260 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADV 319
Query: 311 TKATELLGWEPKIKLRDGLPL 331
TKA +LL + P IK+R+GL L
Sbjct: 320 TKAIDLLKYRPNIKIREGLRL 340
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 153/321 (47%), Gaps = 34/321 (10%)
Query: 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
L+TG AGFIGS+L++KL++ + VI +DN+ TG + NL +W RF I
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 78
Query: 87 RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E ++ VD + H A S +P+ T TN+ G LN+L AK +
Sbjct: 79 EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 138
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
++S YGD P+ E GN P+ S Y K V E Y R +G +
Sbjct: 139 SFTYAASSSTYGDHPALPKVEENIGN--PL---SPYAVTKYVNEIYAQVYARTYGFKTIG 193
Query: 201 ARIFNTYGPRM--NIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLM 258
R FN +G R N V+ + A ++G+ + + G +R FCY+ +++ I
Sbjct: 194 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSA 253
Query: 259 EGENTGPINIGNP--GEFTML-ELAENVKELIN-----PNVEITMVENTPDDPRQRKPDI 310
+++ NI N G+ T L EL+ + + +N + I E D R + D+
Sbjct: 254 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADV 313
Query: 311 TKATELLGWEPKIKLRDGLPL 331
TKA +LL + P IK+R+GL L
Sbjct: 314 TKAIDLLKYRPNIKIREGLRL 334
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 153/321 (47%), Gaps = 34/321 (10%)
Query: 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
L+TG AGFIGS+L++KL++ + VI +DN+ TG + NL +W RF I
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 97
Query: 87 RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E ++ VD + H A S +P+ T TN+ G LN+L AK +
Sbjct: 98 EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 157
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
++S YGD P+ E GN P+ S Y K V E Y R +G +
Sbjct: 158 SFTYAASSSTYGDHPALPKVEENIGN--PL---SPYAVTKYVNEIYAQVYARTYGFKTIG 212
Query: 201 ARIFNTYGPRM--NIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLM 258
R FN +G R N V+ + A ++G+ + + G +R FCY+ +++ I
Sbjct: 213 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSA 272
Query: 259 EGENTGPINIGNP--GEFTML-ELAENVKELIN-----PNVEITMVENTPDDPRQRKPDI 310
+++ NI N G+ T L EL+ + + +N + I E D R + D+
Sbjct: 273 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADV 332
Query: 311 TKATELLGWEPKIKLRDGLPL 331
TKA +LL + P IK+R+GL L
Sbjct: 333 TKAIDLLKYRPNIKIREGLRL 353
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 147/330 (44%), Gaps = 36/330 (10%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
M+IL+TGGAGFIGS +V +++N ++ V+ +D + G+ ++L R+ D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 92 EPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---- 140
+ I + D + HLA + P I+TN++GT +L +A++ +
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 141 ------RILLTSTSEVYGDPLVHPQDES------YWGNVNPIGVRSCYDEGKRVAETLMF 188
R ST EVYGD L HP + + S Y K ++ L+
Sbjct: 121 DKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 189 DYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS 248
+ R +G+ + N YGP + +++ I A+ G+PL + G Q R + YV
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 249 DMVDGL-IRLMEGENTGPINIGNPGEFTMLELAENVKELINPNV--------EITMVENT 299
D L + + EG+ NIG E L++ + +L++ V +IT V +
Sbjct: 238 DHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADR 297
Query: 300 PDDPRQRKPDITKATELLGWEPKIKLRDGL 329
P R+ D K + LGW+P G+
Sbjct: 298 PGHDRRYAIDAGKISRELGWKPLETFESGI 327
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 153/321 (47%), Gaps = 34/321 (10%)
Query: 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
L+TG AGFIGS+L++KL++ + VI +DN+ TG + NL +W RF I
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 84
Query: 87 RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E ++ VD + H A S +P+ T TN+ G LN+L AK +
Sbjct: 85 EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
++S YGD P+ E GN P+ S Y K V E Y R +G +
Sbjct: 145 SFTYAASSSTYGDHPALPKVEENIGN--PL---SPYAVTKYVNEIYAQVYARTYGFKTIG 199
Query: 201 ARIFNTYGPRM--NIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLM 258
R FN +G R N V+ + A ++G+ + + G +R FCY+ +++ I
Sbjct: 200 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSA 259
Query: 259 EGENTGPINIGNP--GEFTML-ELAENVKELIN-----PNVEITMVENTPDDPRQRKPDI 310
+++ NI N G+ T L EL+ + + +N + I E D R + D+
Sbjct: 260 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRASQADV 319
Query: 311 TKATELLGWEPKIKLRDGLPL 331
TKA +LL + P IK+R+GL L
Sbjct: 320 TKAIDLLKYRPNIKIREGLRL 340
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 152/339 (44%), Gaps = 24/339 (7%)
Query: 8 GNHNSASKPPPTPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66
G N T L +++ S N++I +TG GFI SH+ +L ++E + VI D
Sbjct: 4 GTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRL-KHEGHYVIASD-- 60
Query: 67 FTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPASPI-FYKYNPVKTIK 122
+++ + + F L+ V E L VD +++LA + F + N +
Sbjct: 61 -WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMY 119
Query: 123 TNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD------PLVHPQDESYWGNVNPIGVRSC 175
N + + NM+ A+ G R S++ +Y + V ++ W P +
Sbjct: 120 NNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW----PAEPQDA 175
Query: 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVS--NFIAQA-IRGEPL 232
Y K E L Y++ GIE RI R N YGP GR + F +A +
Sbjct: 176 YGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRF 235
Query: 233 TVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVE 292
+ G QTRSF ++ + V+G++RL + + P+NIG+ +M E+AE V +
Sbjct: 236 EMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLP 295
Query: 293 ITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPL 331
I + P+ R R D E LGW P ++L++GL +
Sbjct: 296 IHHIPG-PEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRI 333
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 152/339 (44%), Gaps = 24/339 (7%)
Query: 8 GNHNSASKPPPTPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66
G N T L +++ S N++I +TG GFI SH+ +L ++E + VI D
Sbjct: 4 GTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRL-KHEGHYVIASD-- 60
Query: 67 FTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPASPI-FYKYNPVKTIK 122
+++ + + F L+ V E L VD +++LA + F + N +
Sbjct: 61 -WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMY 119
Query: 123 TNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD------PLVHPQDESYWGNVNPIGVRSC 175
N + + NM+ A+ G R S++ +Y + V ++ W P +
Sbjct: 120 NNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW----PAEPQDA 175
Query: 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQA-IRGEPL 232
Y K E L Y++ GIE RI R N YGP GR + F +A +
Sbjct: 176 YGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRF 235
Query: 233 TVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVE 292
+ G QTRSF ++ + V+G++RL + + P+NIG+ +M E+AE V +
Sbjct: 236 EMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLP 295
Query: 293 ITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPL 331
I + P+ R R D E LGW P ++L++GL +
Sbjct: 296 IHHIPG-PEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRI 333
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 152/339 (44%), Gaps = 24/339 (7%)
Query: 8 GNHNSASKPPPTPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66
G N T L +++ S N++I +TG GFI SH+ +L ++E + VI D
Sbjct: 4 GTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRL-KHEGHYVIASD-- 60
Query: 67 FTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPASPI-FYKYNPVKTIK 122
+++ + + F L+ V E L VD +++LA + F + N +
Sbjct: 61 -WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMY 119
Query: 123 TNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD------PLVHPQDESYWGNVNPIGVRSC 175
N + + NM+ A+ G R S++ +Y + V ++ W P +
Sbjct: 120 NNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW----PAEPQDA 175
Query: 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQA-IRGEPL 232
Y + E L Y++ GIE RI R N YGP GR + F +A +
Sbjct: 176 YGLERLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRF 235
Query: 233 TVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVE 292
+ G QTRSF ++ + V+G++RL + + P+NIG+ +M E+AE V +
Sbjct: 236 EMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLP 295
Query: 293 ITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPL 331
I + P+ R R D E LGW P ++L++GL +
Sbjct: 296 IHHIPG-PEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRI 333
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 19/315 (6%)
Query: 28 FFQSNM-RILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNY-FTGSKDNLRKWIGHPRFE 84
+FQSN ILVTGGAGFIGS+ V +++ E ++I D ++G+ +N++ HP +
Sbjct: 19 YFQSNAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYY 78
Query: 85 LIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 137
++ ++ L+E V I + A + NP+ TNVIGT+ +L L K+
Sbjct: 79 FVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKK 138
Query: 138 V-GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 196
+++ ST EVYG + P+ S Y K A+ + Y++ + +
Sbjct: 139 YPHIKLVQVSTDEVYGS----LGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQL 194
Query: 197 EIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIR 256
+ + R N YGP + +++ + A+ G+ L + G R + +V+D +
Sbjct: 195 PVIVTRCSNNYGPYQYPE--KLIPLXVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDV 252
Query: 257 LMEGENTGPI-NIGNPGEFTMLELAENVKELI-NPNVEITMVENTPDDPRQRKPDITKAT 314
++ G + NIG E T +E+ E + L+ +I V + R+ + K
Sbjct: 253 VLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKXK 312
Query: 315 ELLGWEPKIKLRDGL 329
WEPK GL
Sbjct: 313 NEFDWEPKYTFEQGL 327
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 152/339 (44%), Gaps = 24/339 (7%)
Query: 8 GNHNSASKPPPTPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66
G N T L +++ S N++I +TG GFI SH+ +L ++E + VI D
Sbjct: 4 GTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRL-KHEGHYVIASD-- 60
Query: 67 FTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPASPI-FYKYNPVKTIK 122
+++ + + F L+ V E L VD +++LA + F + N +
Sbjct: 61 -WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMY 119
Query: 123 TNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD------PLVHPQDESYWGNVNPIGVRSC 175
N + + NM+ A+ G R S++ +Y + V ++ W P +
Sbjct: 120 NNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW----PAEPQDA 175
Query: 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQA-IRGEPL 232
+ K E L Y++ GIE RI R N YGP GR + F +A +
Sbjct: 176 FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRF 235
Query: 233 TVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVE 292
+ G QTRSF ++ + V+G++RL + + P+NIG+ +M E+AE V +
Sbjct: 236 EMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLP 295
Query: 293 ITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPL 331
I + P+ R R D E LGW P ++L++GL +
Sbjct: 296 IHHIPG-PEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRI 333
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 23/318 (7%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
MR+LVTGGAGFIGSH+V+ L+ EV V+DN TG ++N+ K + R +L + E
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLAR-GLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVE 59
Query: 93 PLLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS-- 148
E + H A AS +PV + N++G LN+L ++ G L+ +++
Sbjct: 60 RAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGG 119
Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
+YG+ + E W P +S Y K E + Y + +G++ R N YG
Sbjct: 120 AIYGEVPEGERAEETW----PPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYG 175
Query: 209 PRMN-IDDGRVVSNFIAQAIRGEPLTVQA---PGTQ--TRSFCYVSDMVDG-LIRLMEGE 261
PR + + VV+ F + ++G P+T+ A PG + R + YV D+ + + L E
Sbjct: 176 PRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSLE 235
Query: 262 NTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELL--GW 319
G N+G T E+ V E E V+ P P + + +L+ GW
Sbjct: 236 --GIYNVGTGEGHTTREVLMAVAEAAGKAPE---VQPAPPRPGDLERSVLSPLKLMAHGW 290
Query: 320 EPKIKLRDGLPLMEDDFR 337
PK+ ++G+ L D FR
Sbjct: 291 RPKVGFQEGIRLTVDHFR 308
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 138/327 (42%), Gaps = 36/327 (11%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
+IL+TGGAGFIGS LV ++ + V+VVD + G+ +L RF + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 93 PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA---------- 135
+ + D + HLA + P I+TN++GT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 136 KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 195
K+ R ST EVYGD +H D+ ++ P S Y K ++ L+ + R +G
Sbjct: 123 KKSAFRFHHISTDEVYGD--LHSTDD-FFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 196 IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLI 255
+ I N YGP + +++ I A+ G+ L V G Q R + YV D L
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALY 237
Query: 256 RLMEGENTGPI-NIGNPGEFTMLELAENVKELIN---PNVE---------ITMVENTPDD 302
+ G NIG E L++ E + EL+ PN IT V + P
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGH 297
Query: 303 PRQRKPDITKATELLGWEPKIKLRDGL 329
+ D +K LG P+ G+
Sbjct: 298 DLRYAIDASKIARELGCVPQETFESGM 324
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 146/316 (46%), Gaps = 34/316 (10%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWIGHPRFELIRHDV 90
RIL+TGGAGFIG HL L+ + EV V+D+ + K++ P EL D+
Sbjct: 9 RILITGGAGFIGGHLARALVAS-GEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDL 67
Query: 91 TEPLLIEVDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
+ +V +YHLA S P +K P+ + NV ++L L VG ++++ ST
Sbjct: 68 S-----DVRLVYHLASHKSVPRSFK-QPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTC 120
Query: 149 EVYG--DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI--EIRIARIF 204
EVYG D L P+D +P+ RS Y K V ++ H++ + E+ I R F
Sbjct: 121 EVYGQADTLPTPED-------SPLSPRSPYAASK-VGLEMVAGAHQRASVAPEVGIVRFF 172
Query: 205 NTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTG 264
N YGP D +V A + L V+ G Q R F Y++D+VD L+ L
Sbjct: 173 NVYGPGERPD--ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPS 230
Query: 265 PINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELLGWEPKIK 324
+N G+ G+ + + + +P E+ + P++ + + D T +G
Sbjct: 231 VVNFGS-GQSLSVNDVIRILQATSPAAEVARKQPRPNEITEFRADTALQTRQIGE----- 284
Query: 325 LRDGLPLMEDDFRLRL 340
R G +E+ RL L
Sbjct: 285 -RSGGIGIEEGIRLTL 299
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 145/334 (43%), Gaps = 35/334 (10%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELI------ 86
++L+TGG GF+GS+L + + ++IV DN G+ DNL FE +
Sbjct: 3 KLLITGGCGFLGSNLASFALS-QGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 61
Query: 87 RHDVTEPLLIEV-DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--IL 143
++DVT + + D +HLA + NP + NV GTLN+L ++ + I+
Sbjct: 62 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 121
Query: 144 LTSTSEVYGDPLVHPQDESY-----------WGNVNPIGVRSCYDEGKRVAETLMFDYHR 192
+ST++VYGD + +E+ + + S Y K A+ M DY R
Sbjct: 122 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 181
Query: 193 QHGIEIRIARIFNTYGPRM--NIDDGRVVSNFIAQAIR-----GEPLTVQAPGTQTRSFC 245
G+ + R + YG R D G V F +A+ +P T+ G Q R
Sbjct: 182 IFGLNTVVFRHSSMYGGRQFATYDQGWV-GWFCQKAVEIKNGINKPFTISGNGKQVRDVL 240
Query: 246 YVSDMVDGLIRLMEGENT---GPINIGNP--GEFTMLELAENVKELINPNVEITMVENTP 300
+ DM+ + + NIG ++LEL + +++ N ++ T +
Sbjct: 241 HAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRE 300
Query: 301 DDPRQRKPDITKATELLGWEPKIKLRDGLPLMED 334
D R DI K T + W PK+ +DG+ M D
Sbjct: 301 SDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYD 334
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 135/318 (42%), Gaps = 45/318 (14%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK----WIGHPRFELIRHDV 90
IL+ GGAG+IGSH V KL++ E V+VVDN TG +D + + + G R + DV
Sbjct: 4 ILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDV 62
Query: 91 TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE 149
IE + H A + P++ NV G L +L + + + +ST+
Sbjct: 63 FTQENIEA--VMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAA 120
Query: 150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209
YG+ V E NP + Y E K E ++ Y + + +I R FN G
Sbjct: 121 TYGEVDVDLITEETM--TNPT---NTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGA 175
Query: 210 RMNI---DDGRVVSNFIAQAIRGEPLTVQAP------------------GTQTRSFCYVS 248
N +D R ++ I PL +Q GT R + +V
Sbjct: 176 TPNGIIGEDHRPETHLI-------PLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVE 228
Query: 249 DMVD----GLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPR 304
D+V GL L G + N+GN F++ E+ + V+E+ N + + DP
Sbjct: 229 DLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPA 288
Query: 305 QRKPDITKATELLGWEPK 322
+ KA E LGW+P+
Sbjct: 289 RLVASSQKAKEKLGWDPR 306
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 144/321 (44%), Gaps = 34/321 (10%)
Query: 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
L+TG AGFIGS+L++ L++ ++ +V+ +DN+ TG + NL ++W F+ I
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATGHQRNLDEVRSLVSEKQW---SNFKFI 86
Query: 87 RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
+ D+ VD + H A S +P+ + TN+ G LNML A+ +
Sbjct: 87 QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
++S YGD P+ E G P+ S Y K V E + R +G
Sbjct: 147 SFTYAASSSTYGDHPGLPKVEDTIG--KPL---SPYAVTKYVNELYADVFSRCYGFSTIG 201
Query: 201 ARIFNTYGPRM--NIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDG-LIRL 257
R FN +G R N V+ + + I+G+ + + G +R FCY+ + V L+
Sbjct: 202 LRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAA 261
Query: 258 MEGENT--GPINIGNPGEFTMLELAENVKELINPN-----VEITMVENTPDDPRQRKPDI 310
G + NI G ++ +L +++ + N E + D R DI
Sbjct: 262 TAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADI 321
Query: 311 TKATELLGWEPKIKLRDGLPL 331
+KA +LLG+ PK + G+ L
Sbjct: 322 SKAAKLLGYAPKYDVSAGVAL 342
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 133/308 (43%), Gaps = 25/308 (8%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
I+VTGGAGFIGS+ V + N + V V+D + G+K NL +G R EL+ D+ +
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG-DRVELVVGDIAD 65
Query: 93 PLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
L++ D I H A + +P I TN IGT +L A++ R ST
Sbjct: 66 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 125
Query: 148 SEVYGD-PLVHP---------QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE 197
EVYGD PL + + N NP S Y K ++ ++ + R G++
Sbjct: 126 DEVYGDLPLREDLPGHGEGPGEKFTAETNYNP---SSPYSSTKAASDLIVKAWVRSFGVK 182
Query: 198 IRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRL 257
I+ N YGP +I+ + + I + G + G R + + +D G+ +
Sbjct: 183 ATISNCSNNYGPYQHIE--KFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAI 240
Query: 258 MEGENTGPIN-IGNPGEFTMLELAENVKELI-NPNVEITMVENTPDDPRQRKPDITKATE 315
+ G IG GE E+ E + E + P V + + D +K +
Sbjct: 241 LTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRD 300
Query: 316 LLGWEPKI 323
LGW P+
Sbjct: 301 ELGWTPQF 308
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 34/287 (11%)
Query: 32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGS--KDNLRKWIGH------PR 82
N IL+TGGAGF+GS+L EN K +V+V+D + + + +N +GH +
Sbjct: 10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFK 69
Query: 83 FELIRHDVTEPL------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
E+I D+ PL + D ++H A + N +KTN LN+L +A+
Sbjct: 70 GEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM--LNQELVMKTNYQAFLNLLEIAR 127
Query: 137 RVGARILLTSTSEVYGD---PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
A+++ S++ VYG+ P V ++ES P + Y K + + H
Sbjct: 128 SKKAKVIYASSAGVYGNTKAPNVVGKNES------P---ENVYGFSKLCMDEFVLS-HSN 177
Query: 194 HGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
+++ + R FN YGPR + +V A+ + + + G Q R F Y+ D++
Sbjct: 178 DNVQVGL-RYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVI 236
Query: 252 DGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVEN 298
++ M+ + +G N+G + E+ +KE + + ++T ++N
Sbjct: 237 QANVKAMKAQKSGVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKN 282
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 142/328 (43%), Gaps = 42/328 (12%)
Query: 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
+MR L+TG AGF+G +L + L E + EV F S++N K P E+I D+
Sbjct: 12 SMRALITGVAGFVGKYLANHLTE-QNVEV------FGTSRNNEAKL---PNVEMISLDIM 61
Query: 92 EPLL-------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVGARI 142
+ I+ D I+HLA +S N T TNV GTL++L + + RI
Sbjct: 62 DSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRI 121
Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
L +SE YG ++ P+ ES N + S Y K L Y + +G++I R
Sbjct: 122 LTIGSSEEYG--MILPE-ESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTR 178
Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAI-----RGEPLTVQAPGTQTRSFCYVSDMVDGLIRL 257
FN GP ++ G V +F Q + + EP+ R F V D+V L
Sbjct: 179 TFNHIGPGQSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLL 236
Query: 258 MEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDIT------ 311
+ TG + G T ++ ++ L NV+I +T +P Q +P
Sbjct: 237 SQYGKTGDVYNVCSGIGTRIQDVLDLL-LAMANVKI----DTELNPLQLRPSEVPTLIGS 291
Query: 312 --KATELLGWEPKIKLRDGLPLMEDDFR 337
+ + GW+P+I L L + +R
Sbjct: 292 NKRLKDSTGWKPRIPLEKSLFEILQSYR 319
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/386 (22%), Positives = 151/386 (39%), Gaps = 80/386 (20%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGHPRFELIRH 88
S+MR+LV GGAG+IGSH V L+ + + V++VD+ G D++ R +L +
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVAR-KLQQS 59
Query: 89 DVTEPLLIE-------------------------VDQIYHLACPASPIFYKYNPVKTIKT 123
D +P + +D + H+ + +P+K
Sbjct: 60 DGPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDN 119
Query: 124 NVIGTLNML-GLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV------RSCY 176
NV+G L +L + +I+ +S++ ++G+P + S N PI + S Y
Sbjct: 120 NVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTM----GSVSTNAEPIDINAKKSPESPY 175
Query: 177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQAIRGEPLTV 234
E K +AE ++ D +GI+ R FN G + D G S + I G ++
Sbjct: 176 GESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSD 235
Query: 235 QAP---------------------------GTQTRSFCYVSDMVDGLIRLMEG-ENTGP- 265
AP GT R + +V D+ I ++ E GP
Sbjct: 236 IAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPN 295
Query: 266 --------INIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELL 317
N+G +++ E+ E ++ + + DP KA E+L
Sbjct: 296 DKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVL 355
Query: 318 GWEPKIKLRDGLPLMEDDFRLRLAVP 343
GW+PK + +ME ++ + P
Sbjct: 356 GWKPKYDTLEA--IMETSWKFQRTHP 379
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 138/325 (42%), Gaps = 44/325 (13%)
Query: 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR 87
+FQS MRILVTGG+G +G + K++ + + D F SKD +L
Sbjct: 4 YFQS-MRILVTGGSGLVGK-AIQKVVADGAG-LPGEDWVFVSSKDA----------DLTD 50
Query: 88 HDVTEPLLIEVD--QIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
T L +V + HLA +F KYN + + NV N+L A VGAR +
Sbjct: 51 TAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKV 109
Query: 144 LTSTSE-VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
++ S ++ D +P DE+ N P Y KR+ + Y +Q+G
Sbjct: 110 VSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVI 169
Query: 203 IFNTYGPR--MNIDDGRVVSNFIAQA----IRGEPLTVQAPGTQTRSFCYVSDMVDGLIR 256
N +GP NI+DG V+ I + G LTV G R F Y D+ I
Sbjct: 170 PTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIW 229
Query: 257 LM-EGENTGPI--NIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKA 313
++ E PI ++G E ++ E AE V E ++ + E+T + T D + +K
Sbjct: 230 VLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTF-DTTKSDGQFKKT----- 283
Query: 314 TELLGWEPKIKLRDGLPLMEDDFRL 338
KLR LP DFR
Sbjct: 284 ------ASNSKLRTYLP----DFRF 298
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 138/325 (42%), Gaps = 44/325 (13%)
Query: 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR 87
+FQS MRILVTGG+G +G + K++ + + D F SKD +L
Sbjct: 3 YFQS-MRILVTGGSGLVGK-AIQKVVADGAG-LPGEDWVFVSSKDA----------DLTD 49
Query: 88 HDVTEPLLIEVD--QIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
T L +V + HLA +F KYN + + NV N+L A VGAR +
Sbjct: 50 TAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKV 108
Query: 144 LTSTSE-VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
++ S ++ D +P DE+ N P Y KR+ + Y +Q+G
Sbjct: 109 VSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVI 168
Query: 203 IFNTYGPR--MNIDDGRVVSNFIAQA----IRGEPLTVQAPGTQTRSFCYVSDMVDGLIR 256
N +GP NI+DG V+ I + G LTV G R F Y D+ I
Sbjct: 169 PTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIW 228
Query: 257 LMEGEN-TGPI--NIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKA 313
++ N PI ++G E ++ E AE V E ++ + E+T + T D + +K
Sbjct: 229 VLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTF-DTTKSDGQFKKT----- 282
Query: 314 TELLGWEPKIKLRDGLPLMEDDFRL 338
KLR LP DFR
Sbjct: 283 ------ASNSKLRTYLP----DFRF 297
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 137/320 (42%), Gaps = 41/320 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
MR+LVTGG+G+IGSH +L++N ++VI++DN + L R HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
+ +ST+ VYGD P ES+ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSTATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNIDDGR----VVSN---FIAQAIRG--EPLTV------QAPGTQTRS 243
+ R FN G + D G + +N +IAQ G + L + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMVDGLIRLMEGENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENT 299
+ +V D+ DG + ME P N+G ++L++ + V
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 300 PDDPRQRKPDITKATELLGW 319
D D +KA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 137/320 (42%), Gaps = 41/320 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
MR+LVTGG+G+IGSH +L++N ++VI++DN + L R HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
+ +S++ VYGD P ES+ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNIDDGR----VVSN---FIAQAIRG--EPLTV------QAPGTQTRS 243
+ R FN G + D G + +N +IAQ G + L + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMVDGLIRLMEGENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENT 299
+ +V D+ DG + ME P N+G ++L++ + V
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 300 PDDPRQRKPDITKATELLGW 319
D D +KA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 137/320 (42%), Gaps = 41/320 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
MR+LVTGG+G+IGSH +L++N ++VI++DN + L R HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
+ +S++ VYGD P ES+ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNIDDGR----VVSN---FIAQAIRG--EPLTV------QAPGTQTRS 243
+ R FN G + D G + +N +IAQ G + L + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMVDGLIRLMEGENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENT 299
+ +V D+ DG + ME P N+G ++L++ + V
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 300 PDDPRQRKPDITKATELLGW 319
D D +KA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 136/320 (42%), Gaps = 41/320 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
MR+LVTGG+G+IGSH +L++N ++VI++DN + L R HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
+ +S + VYGD P ES+ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNIDDGR----VVSN---FIAQAIRG--EPLTV------QAPGTQTRS 243
+ R FN G + D G + +N +IAQ G + L + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMVDGLIRLMEGENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENT 299
+ +V D+ DG + ME P N+G ++L++ + V
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 300 PDDPRQRKPDITKATELLGW 319
D D +KA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 137/320 (42%), Gaps = 41/320 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
MR+LVTGG+G+IGSH +L++N ++VI++DN + L R HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
+ +S++ VYGD P ES+ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNIDDGR----VVSN---FIAQAIRG--EPLTV------QAPGTQTRS 243
+ R FN G + D G + +N +IAQ G + L + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMVDGLIRLMEGENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENT 299
+ +V D+ DG + ME P N+G ++L++ + V
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 300 PDDPRQRKPDITKATELLGW 319
D D +KA L W
Sbjct: 293 EGDLPACWADASKADRELNW 312
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 136/320 (42%), Gaps = 41/320 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
MR+LVTGG+G+IGSH +L++N ++VI++DN + L R HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
+ +S + VYGD P ES+ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNIDDGR----VVSN---FIAQAIRG--EPLTV------QAPGTQTRS 243
+ R FN G + D G + +N +IAQ G + L + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMVDGLIRLMEGENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENT 299
+ +V D+ DG + ME P N+G ++L++ + V
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 300 PDDPRQRKPDITKATELLGW 319
D D +KA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 136/320 (42%), Gaps = 41/320 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
MR+LVTGG+G+IGSH +L++N ++VI++DN + L R HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
+ +S + VYGD P ES+ P G +S Y + K + E ++ D + Q I
Sbjct: 118 NFIFSSVATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNIDDGR----VVSN---FIAQAIRG--EPLTV------QAPGTQTRS 243
+ R FN G + D G + +N +IAQ G + L + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMVDGLIRLMEGENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENT 299
+ +V D+ DG + ME P N+G ++L++ + V
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 300 PDDPRQRKPDITKATELLGW 319
D D +KA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 131/306 (42%), Gaps = 29/306 (9%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
S+MRIL+TGGAG +GS+L++ + + +E++V+DN+ TG ++ L G +I V
Sbjct: 19 SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDNFATGKREVLPPVAG---LSVIEGSV 74
Query: 91 TEPLLIE--VDQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGARILLT 145
T+ L+E D S YK +P + TNV G++N+ A + G + LL
Sbjct: 75 TDAGLLERAFDSFKPTHVVHSAAAYK-DPDDWAEDAATNVQGSINVAKAASKAGVKRLLN 133
Query: 146 -STSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
T+ YG P P +P + Y K E + + + R+
Sbjct: 134 FQTALCYGRPATVPIPID-----SPTAPFTSYGISKTAGEAFLM----MSDVPVVSLRLA 184
Query: 205 NTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVD-GLIRLMEGENT 263
N GPR+ I + F + G+ R F +SD + + L EG T
Sbjct: 185 NVTGPRLAIGP---IPTFYKRLKAGQKCFCS---DTVRDFLDMSDFLAIADLSLQEGRPT 238
Query: 264 GPINIGNPGEFTMLELAENVKELINPNVE--ITMVENTPDDPRQRKPDITKATELLGWEP 321
G N+ ++ E+ + V + + + + +V DD D +K GW+
Sbjct: 239 GVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKA 298
Query: 322 KIKLRD 327
K+ +D
Sbjct: 299 KVDFKD 304
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 137/320 (42%), Gaps = 41/320 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
MR+LVTGG+G+IGSH +L++N ++VI++DN + L R HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
+ +S++ VYGD P ES+ P G +S + + K + E ++ D + Q I
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNIDDGR----VVSN---FIAQAIRG--EPLTV------QAPGTQTRS 243
+ R FN G + D G + +N +IAQ G + L + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMVDGLIRLMEGENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENT 299
+ +V D+ DG + ME P N+G ++L++ + V
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 300 PDDPRQRKPDITKATELLGW 319
D D +KA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 136/320 (42%), Gaps = 41/320 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
MR+LVTGG+G+IGSH +L++N ++VI++DN + L R HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
+ +S + VYGD P ES+ P G +S + + K + E ++ D + Q I
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNIDDGR----VVSN---FIAQAIRG--EPLTV------QAPGTQTRS 243
+ R FN G + D G + +N +IAQ G + L + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMVDGLIRLMEGENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENT 299
+ +V D+ DG + ME P N+G ++L++ + V
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 300 PDDPRQRKPDITKATELLGW 319
D D +KA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 136/320 (42%), Gaps = 41/320 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
MR+LVTGG+G+IGSH +L++N ++VI++DN + L R HP F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89 DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
D+ E L+ E +D + H A + P++ NV GTL ++ + +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
+ +S + VYGD P ES+ P G +S + + K + E ++ D + Q I
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNIDDGR----VVSN---FIAQAIRG--EPLTV------QAPGTQTRS 243
+ R FN G + D G + +N +IAQ G + L + GT R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMVDGLIRLMEGENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENT 299
+ +V D+ DG + ME P N+G ++L++ + V
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 300 PDDPRQRKPDITKATELLGW 319
D D +KA L W
Sbjct: 293 EGDLPAYWADASKADRELNW 312
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 119/297 (40%), Gaps = 33/297 (11%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR---FELIRHD 89
++I VTGG GF+G ++V+ + +N+ N I+ L + IG+ +E D
Sbjct: 3 LKIAVTGGTGFLGQYVVESI-KNDGNTPII-----------LTRSIGNKAINDYEYRVSD 50
Query: 90 VTEPLLI----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILL 144
T LI +VD + HLA + N I T N+ + I+
Sbjct: 51 YTLEDLINQLNDVDAVVHLAATRGS----QGKISEFHDNEILTQNLYDACYENNISNIVY 106
Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
ST Y D P +E P+ Y K E + Y R+ G+ I+ R
Sbjct: 107 ASTISAYSDETSLPWNEKEL----PLP-DLXYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
Query: 205 NTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEGEN-T 263
+ YG N + ++ F QA GE LT+ A R F Y D +I ++ E +
Sbjct: 162 HLYG--FNEKNNYXINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVS 219
Query: 264 GPINIGNPGEFTMLELAENVKELI-NPNVEITMVENTPDDPRQRKPDITKATELLGW 319
G NIG+ T E+A + N + + N + D +KA ELL +
Sbjct: 220 GTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYXDSSKAKELLDF 276
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 133/335 (39%), Gaps = 42/335 (12%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
+ R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVL------RTRDELNLLDSRAVHDFFASE- 54
Query: 91 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
+DQ+Y A I P I N++ N++ A + ++L +S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108
Query: 149 EVYGDPLVHPQDES--YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
+Y P ES G + P Y K L Y+RQ+G + R N
Sbjct: 109 CIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNL 166
Query: 207 YGPRMNI--DDGRVVSNFI-----AQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
YGP N + V+ + A A + + V GT R F +V DM I +ME
Sbjct: 167 YGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
Query: 260 G------ENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPD 309
ENT P IN+G + T+ ELA+ + +++ + + PD ++ D
Sbjct: 227 LAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLD 286
Query: 310 ITKATELLGWEPKIKLRDGLP-----LMEDDFRLR 339
+T+ + LGW +I L GL +E+ R R
Sbjct: 287 VTRLHQ-LGWYHEISLEAGLASTYQWFLENQDRFR 320
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 132/335 (39%), Gaps = 42/335 (12%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
S R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 SKQRVFIAGHRGMVGSAIRRQLEQRGDVELVL------RTRDELNLLDSRAVHDFFASE- 54
Query: 91 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
+DQ+Y A I P I N++ N++ A + ++L +S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108
Query: 149 EVYGDPLVHPQDES--YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
+Y P ES G + P Y K L Y+RQ+G + R N
Sbjct: 109 CIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNL 166
Query: 207 YGPRMNI--DDGRVVSNFI-----AQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
YGP N + V+ + A A + V GT R F +V DM I +ME
Sbjct: 167 YGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
Query: 260 G------ENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPD 309
ENT P IN+G + T+ ELA+ + +++ + + PD ++ D
Sbjct: 227 LAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLD 286
Query: 310 ITKATELLGWEPKIKLRDGLP-----LMEDDFRLR 339
+T+ + LGW +I L GL +E+ R R
Sbjct: 287 VTRLHQ-LGWYHEISLEAGLASTYQWFLENQDRFR 320
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 132/335 (39%), Gaps = 42/335 (12%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
S R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 SKQRVFIAGHRGMVGSAIRRQLEQRGDVELVL------RTRDELNLLDSRAVHDFFASE- 54
Query: 91 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
+DQ+Y A I P I N++ N++ A + ++L +S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108
Query: 149 EVYGDPLVHPQDES--YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
+Y P ES G + P Y + L Y+RQ+G + R N
Sbjct: 109 CIYPKLAKQPMAESELLQGTLEP--TNEPYAIARIAGIKLCESYNRQYGRDYRSVMPTNL 166
Query: 207 YGPRMNI--DDGRVVSNFI-----AQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
YGP N + V+ + A A + V GT R F +V DM I +ME
Sbjct: 167 YGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
Query: 260 G------ENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPD 309
ENT P IN+G + T+ ELA+ + +++ + + PD ++ D
Sbjct: 227 LAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLD 286
Query: 310 ITKATELLGWEPKIKLRDGLP-----LMEDDFRLR 339
+T+ + LGW +I L GL +E+ R R
Sbjct: 287 VTRLHQ-LGWYHEISLEAGLASTYQWFLENQDRFR 320
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 132/335 (39%), Gaps = 42/335 (12%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
S R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 SKQRVFIAGHRGMVGSAIRRQLEQRGDVELVL------RTRDELNLLDSRAVHDFFASE- 54
Query: 91 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
+DQ+Y A I P I N++ N++ A + ++L +S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108
Query: 149 EVYGDPLVHPQDES--YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
+Y P ES G + P Y K L Y+RQ+G + R N
Sbjct: 109 CIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNL 166
Query: 207 YGPRMNI--DDGRVVSNFI-----AQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
YGP N + V+ + A A + V GT R F +V DM I +ME
Sbjct: 167 YGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
Query: 260 G------ENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPD 309
ENT P IN+G + T+ +LA+ + +++ + + PD ++ D
Sbjct: 227 LAHEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVVGYKGRVVFDASKPDGTPRKLLD 286
Query: 310 ITKATELLGWEPKIKLRDGLP-----LMEDDFRLR 339
+T+ + LGW +I L GL +E+ R R
Sbjct: 287 VTRLHQ-LGWYHEISLEAGLASTYQWFLENQDRFR 320
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 131/335 (39%), Gaps = 42/335 (12%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
+ R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVL------RTRDELNLLDSRAVHDFFASE- 54
Query: 91 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
+DQ+Y A I P I N++ N++ A + ++L S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGAS 108
Query: 149 EVYGDPLVHPQDES--YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
+Y P ES G + P Y K L Y+RQ+G + R N
Sbjct: 109 CIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNL 166
Query: 207 YGPRMNI--DDGRVVSNFI-----AQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
YGP N + V+ + A A + V GT R F +V DM I +ME
Sbjct: 167 YGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226
Query: 260 G------ENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPD 309
ENT P IN+G + T+ ELA+ + +++ + + PD ++ D
Sbjct: 227 LAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLD 286
Query: 310 ITKATELLGWEPKIKLRDGLP-----LMEDDFRLR 339
+T+ + LGW +I L GL +E+ R R
Sbjct: 287 VTRLHQ-LGWYHEISLEAGLASTYQWFLENQDRFR 320
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 136/339 (40%), Gaps = 50/339 (14%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
S R+ + G G +GS + +L + E+++ ++D L + +
Sbjct: 2 SKQRVFIAGHRGMVGSAIRRQLEQRGDVELVL------RTRDELNLLDSRAVHDFFASE- 54
Query: 91 TEPLLIEVDQIYHLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
+DQ+Y A I P I N++ N++ A + ++L +S
Sbjct: 55 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108
Query: 149 EVYGDPLVHPQDES--YWGNVNPIGVRSCYDEGKRVAE----TLMFDYHRQHGIEIRIAR 202
+Y P ES G + P +E + +A+ L Y+RQ+G + R
Sbjct: 109 CIYPKLAKQPMAESELLQGTLEPT------NEPEAIAKIAGIKLCESYNRQYGRDYRSVM 162
Query: 203 IFNTYGPRMNI--DDGRVVSNFI-----AQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLI 255
N YGP N + V+ + A A + V GT R F +V DM I
Sbjct: 163 PTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASI 222
Query: 256 RLMEG------ENTGP----INIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQ 305
+ME ENT P IN+G + T+ ELA+ + +++ + + PD +
Sbjct: 223 HVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPR 282
Query: 306 RKPDITKATELLGWEPKIKLRDGLP-----LMEDDFRLR 339
+ D+T+ + LGW +I L GL +E+ R R
Sbjct: 283 KLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLENQDRFR 320
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 143/330 (43%), Gaps = 45/330 (13%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLRK-------WIGH 80
++LVTGGAG+IGSH V +L+E V V+DN+ F G ++LR+ +
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81 PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
+++ + L + + H A + P+ + N+ GT+ +L + K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 195
G + ++ +S++ VYG+P P DE++ G NP Y + K E ++ D +
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADK 176
Query: 196 I-EIRIARIFNTYGPRMN---IDDGRVVSN----FIAQAIRG--EPLTV------QAPGT 239
+ + R FN G + +D + + N +++Q G E L V GT
Sbjct: 177 TWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236
Query: 240 QTRSFCYVSDMVDGLI----RLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITM 295
R + +V D+ G I +L E N+G +++L++ + +++ + +
Sbjct: 237 GVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Query: 296 VENTPDDPRQRKPDITKATELLGWEPKIKL 325
V D + + A E LGW + L
Sbjct: 297 VARREGDVAACYANPSLAQEELGWTAALGL 326
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 143/330 (43%), Gaps = 45/330 (13%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLRK-------WIGH 80
++LVTGGAG+IGSH V +L+E V V+DN+ F G ++LR+ +
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81 PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
+++ + L + + H A + P+ + N+ GT+ +L + K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 195
G + ++ +S++ VYG+P P DE++ G NP Y + K E ++ D +
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADK 176
Query: 196 I-EIRIARIFNTYGPRMN---IDDGRVVSN----FIAQAIRG--EPLTV------QAPGT 239
+ + R FN G + +D + + N +++Q G E L V GT
Sbjct: 177 TWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236
Query: 240 QTRSFCYVSDMVDGLI----RLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITM 295
R + +V D+ G I +L E N+G +++L++ + +++ + +
Sbjct: 237 GVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Query: 296 VENTPDDPRQRKPDITKATELLGWEPKIKL 325
V D + + A E LGW + L
Sbjct: 297 VARREGDVAACYANPSLAQEELGWTAALGL 326
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 141/348 (40%), Gaps = 55/348 (15%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
ILVTGGAG+IGSH +L+ + +V++ DN ++ + R E I P
Sbjct: 8 ILVTGGAGYIGSHTAVELLAH-GYDVVIADNLVNSKREAI------ARIEKITGKT--PA 58
Query: 95 LIEVDQIYHLACP----ASPI--FYKYNPVKTIKTNVIGTLNMLG------------LAK 136
E D A A PI + +K + +V + + +
Sbjct: 59 FHETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRE 118
Query: 137 RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-G 195
R RI+ +S++ VYG P P DE++ P+ + Y + K +AE ++ D
Sbjct: 119 RAVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVEAADPS 173
Query: 196 IEIRIARIFNTYGPR----MNIDDGRVVSN---FIAQAIRG--EPLTVQAP------GTQ 240
+ R FN G + D + +N ++AQ G E L V GT
Sbjct: 174 WRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTG 233
Query: 241 TRSFCYVSDMVDGLIRLMEG----ENTGPINIGNPGEFTMLELAENVKELINPNVEITMV 296
R + +V D+ G I ++ + + +N+G +++LE+ ++ V +V
Sbjct: 234 VRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELV 293
Query: 297 ENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDFRLRLAVPR 344
P D + + A E +GW+ + RD + D +R + PR
Sbjct: 294 ARRPGDVAECYANPAAAAETIGWKAE---RDLERMCADHWRWQENNPR 338
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 48/348 (13%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLRK-------WIGH 80
++LVTGGAG+IGSH V +L+E V V+DN+ F G ++LR+ +
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81 PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
+++ + L + + H A + P+ + N+ GT+ +L + K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 195
G + ++ +S++ VYG+P P DE++ G NP Y + K E ++ D +
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADK 176
Query: 196 I-EIRIARIFNTYGPRMN---IDDGRVVSN----FIAQAIRG--EPLTV------QAPGT 239
+ R FN G + +D + + N +++Q G E L V GT
Sbjct: 177 TWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236
Query: 240 QTRSFCYVSDMVDGLI----RLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITM 295
R + +V D+ G I +L E N+G +++L++ + +++ + +
Sbjct: 237 GVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Query: 296 VENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDFRLRLAVP 343
V D + + A E LGW + L + ED +R + P
Sbjct: 297 VARREGDVAACYANPSLAQEELGWTAALGLDR---MCEDLWRWQKQNP 341
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 119/283 (42%), Gaps = 38/283 (13%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
++ +TG G IGSH+ + L+E ++V+ +DN+ TG +++L+ HP + + +
Sbjct: 23 KVFITGICGQIGSHIAELLLE-RGDKVVGIDNFATGRREHLKD---HPNLTFVEGSIADH 78
Query: 94 LLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILL 144
L+ + D + H A YN TN +G N++ AK+ VG R +
Sbjct: 79 ALVNQLIGDLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAAKKNNVG-RFVY 134
Query: 145 TSTSEVYG-DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
T+ YG P+ P + N S Y K E DY G++ R+
Sbjct: 135 FQTALCYGVKPIQQPVRLDHPRNP----ANSSYAISKSANE----DYLEYSGLDFVTFRL 186
Query: 204 FNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEGENT 263
N GPR N+ + F + G+ V R F +V D+ +R ++G
Sbjct: 187 ANVVGPR-NVSGPLPI--FFQRLSEGKKCFVT---KARRDFVFVKDLARATVRAVDGVGH 240
Query: 264 GPINIGNPGEFTMLELAENVKELIN----PNVEITMVENTPDD 302
G + + + + EL + V E + P EI E PDD
Sbjct: 241 GAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIR--ELGPDD 281
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 139/348 (39%), Gaps = 70/348 (20%)
Query: 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------KDNL 74
K F R+ VTG GF GS L L E +V Y + D +
Sbjct: 4 KNFWQGKRVFVTGHTGFKGSWLSLWLTEMGA----IVKGYALDAPTVPSLFEIVRLNDLM 59
Query: 75 RKWIGHPR-FELIRHDVTEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNML 132
IG R FE +R + E + + ++H+A P + Y+ P+KT TNV+GT+++L
Sbjct: 60 ESHIGDIRDFEKLRSSIAE---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLL 115
Query: 133 GLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWG--NVNPIGVRSCYDEGKRVAETLMFD 189
K+VG + ++ TS+ D E WG P+G Y K AE +
Sbjct: 116 ETVKQVGNIKAVVNITSDKCYD-----NREWVWGYRENEPMGGYDPYSNSKGCAELVASA 170
Query: 190 Y---------HRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 240
+ + QHG+ + R N G D R++ + + + + ++ P
Sbjct: 171 FRNSFFNPANYEQHGVGLASVRAGNVIGGGDWAKD-RLIPDILRSFENNQQVIIRNP-YS 228
Query: 241 TRSFCYVSDMVDGLI-----------RLMEGENTGPINIGNPGEFTMLELAENVKELINP 289
R + +V + + G I + EG N GP + E A+ V+ +++
Sbjct: 229 IRPWQHVLEPLSGYIVVAQRLYTEGAKFSEGWNFGPRD----------EDAKTVEFIVDK 278
Query: 290 NVEITM--------VENTPDDPRQRKPDITKATELLGWEPKIKLRDGL 329
V + EN P + K D +KA LGW P+ L + L
Sbjct: 279 MVTLWGDDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTETL 326
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 137/333 (41%), Gaps = 47/333 (14%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-------RKWIGHPRFELIR 87
+LVTGGAG+IGSH V +L+EN + +V DN + D++ + I +L
Sbjct: 14 VLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 72
Query: 88 HDVTEPLLIE--VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILL 144
E + E +D + H A + P++ N++GT+ +L L ++ ++ +
Sbjct: 73 RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVF 132
Query: 145 TSTSEVYGDPLVHPQ-----DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR--QHGIE 197
+S++ VYGD P +E G NP Y K E ++ D + + +
Sbjct: 133 SSSATVYGDATRFPNMIPIPEECPLGPTNP------YGHTKYAIENILNDLYNSDKKSWK 186
Query: 198 IRIARIFNTYGPR---MNIDDGRVVSN----FIAQAIRG--EPLTV------QAPGTQTR 242
I R FN G + +D + N ++AQ G E L + GT R
Sbjct: 187 FAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIR 246
Query: 243 SFCYVSDMVDGLIRLME-----GENTGPI---NIGNPGEFTMLELAENVKELINPNVEIT 294
+ +V D+ G I ++ EN G N+G+ T+ E+ + ++
Sbjct: 247 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYK 306
Query: 295 MVENTPDDPRQRKPDITKATELLGWEPKIKLRD 327
+ D +A L W+ ++++ D
Sbjct: 307 VTGRRAGDVLNLTAKPDRAKRELKWQTELQVED 339
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 142/352 (40%), Gaps = 66/352 (18%)
Query: 36 LVTGGAGFIGSHLVDKLMENEKNEVIVV----DNYFTGSKDNLRK--WIGHPRFELIRHD 89
L+TG G GS+L + L+E + EV + ++ T D++ + +P+F L D
Sbjct: 5 LITGVTGQDGSYLAEFLLE-KGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGD 63
Query: 90 VTEP-----LLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM------LGLAK 136
+++ +L EV D++Y+L + +P T + +GTL + LGL K
Sbjct: 64 LSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 137 RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 196
+ R STSE+YG PQ E+ P RS Y K A + +Y +G+
Sbjct: 124 KT--RFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGM 176
Query: 197 EIRIARIFNTYGPR-----MNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
+FN PR + R ++N IAQ + E R + + D V
Sbjct: 177 YACNGILFNHESPRRGETFVTRKITRAIAN-IAQGL--ESCLYLGNMDSLRDWGHAKDYV 233
Query: 252 DGLIRLMEGENTGPINIGNPGEFTMLELAENVKEL--INPNVEITMVE-----------N 298
+++ E I ++++ + E I E T VE +
Sbjct: 234 KMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHD 293
Query: 299 TPD----------DPRQRKP--------DITKATELLGWEPKIKLRDGLPLM 332
P DPR +P D TKA E LGW+P+I LR+ + M
Sbjct: 294 APGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEM 345
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 102/251 (40%), Gaps = 32/251 (12%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD------NLRKWIGHPRFELIRH 88
I+VTGGAGFIGS++V L + +++VVDN G+K N+ ++ F LI+
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDF-LIQI 107
Query: 89 DVTEPLLIEVDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E +V+ I+H AC ++ +++ + N + +L L S+
Sbjct: 108 MAGEEFG-DVEAIFHEGACSSTT---EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 163
Query: 148 SEVYGDPLV-HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD-YHRQ----HGIEIRIA 201
+ YG + Y +N G +FD Y RQ +I
Sbjct: 164 AATYGGRTSDFIESREYEKPLNVFGYSK-----------FLFDEYVRQILPEANSQIVGF 212
Query: 202 RIFNTYGPRMNIDD--GRVVSNFIAQAIRGE-PLTVQAPGTQTRSFCYVSDMVDGLIRLM 258
R FN YGPR V + Q GE P + R F YV D+ D + +
Sbjct: 213 RYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFL 272
Query: 259 EGENTGPINIG 269
E +G N+G
Sbjct: 273 ENGVSGIFNLG 283
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 30/250 (12%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD------NLRKWIGHPRFELIRH 88
I+VTGGAGFIGS++V L + +++VVDN G+K N+ ++ F LI+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDF-LIQI 60
Query: 89 DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148
E +V+ I+H +S +++ + N + +L L S++
Sbjct: 61 MAGEEFG-DVEAIFHEGAXSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 117
Query: 149 EVYGDPLV-HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD-YHRQ----HGIEIRIAR 202
YG + Y +N G +FD Y RQ +I R
Sbjct: 118 ATYGGRTSDFIESREYEKPLNVYGYSK-----------FLFDEYVRQILPEANSQIVGFR 166
Query: 203 IFNTYGPRMNIDD--GRVVSNFIAQAIRGE-PLTVQAPGTQTRSFCYVSDMVDGLIRLME 259
FN YGPR V + Q GE P + R F YV D+ D + +E
Sbjct: 167 YFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLE 226
Query: 260 GENTGPINIG 269
+G N+G
Sbjct: 227 NGVSGIFNLG 236
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 140/348 (40%), Gaps = 55/348 (15%)
Query: 24 RFSKFFQSNMR--ILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYF-TGSKDNLRKWI 78
R +K+FQ +MR L+TG G GS+L + L+E E + ++ + F TG ++L K
Sbjct: 14 RENKYFQGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYK-- 71
Query: 79 GHPR------FELIRHDVTEP-LLIEV------DQIYHLACPASPIFYKYNPVKTIKTNV 125
+P+ +L D+T+ L+++ +IY+L + T +
Sbjct: 72 -NPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDG 130
Query: 126 IGTLNMLGLAKRVG----ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR 181
+GTL +L K G + STSE+YG PQ E+ P RS Y K
Sbjct: 131 VGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKL 185
Query: 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGEPLTVQAPGT- 239
A ++ ++ + + +FN PR + R +S +A+ G+ L + G
Sbjct: 186 YAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQ-LECFSLGNL 244
Query: 240 -QTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAEN---------------- 282
R + + D V+ + +++ + I ++ E E
Sbjct: 245 DAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNE 304
Query: 283 -----VKELINPNVEITMVENTPDDPRQRKPDITKATELLGWEPKIKL 325
KE +V + + P + + D TKA + L W+P++
Sbjct: 305 NEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAF 352
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 137/336 (40%), Gaps = 46/336 (13%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
ILVTG +G IG+ LV L E + ++ + D +++ G +F I DV+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVI-------ASDIVQRDTGGIKF--ITLDVSNRD 52
Query: 95 LIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVGARILLT 145
I+ +D I+HLA S K +P K N+ GT N+L AK RV ++++
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIP 110
Query: 146 STSEVYGDPLVHPQDESYWGNVNPIGV---RSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
ST V+G E+ V I + R+ Y K AE L Y+ + G+++R R
Sbjct: 111 STIGVFG-------PETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLR 163
Query: 203 ----IFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLM 258
I P D V A++ E + Y+ D + L+ L
Sbjct: 164 YPGIISYKAEPTAGTTDYAV--EIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLY 221
Query: 259 EGENTGPI-----NIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKP---DI 310
E + + N+ FT EL +KE I P EI E+ D P D
Sbjct: 222 EADRDKLVLRNGYNV-TAYTFTPSELYSKIKERI-PEFEIEYKEDFRDKIAATWPESLDS 279
Query: 311 TKATELLGWEPKIKLRDGLPLMEDDFRLRLAVPRKN 346
++A+ G+ + L + M D +L + K+
Sbjct: 280 SEASNEWGFSIEYDLDRTIDDMIDHISEKLGIEGKH 315
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 131/340 (38%), Gaps = 58/340 (17%)
Query: 29 FQSNMRILVTGGAGFIGSHL------VDKLMENEKNEVIVVDNYFTGSK--DNLRKWIGH 80
F R+ VTG GF G L + ++ V + F ++ D ++ IG
Sbjct: 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGD 65
Query: 81 PR-----FELIRHDVTEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNMLGL 134
R E IR + + ++H+A P + Y PV+T TNV+GT+ +L
Sbjct: 66 IRDQNKLLESIRE-------FQPEIVFHMAAQPLVRLSYS-EPVETYSTNVMGTVYLLEA 117
Query: 135 AKRVGA-RILLTSTSEVYGDPLVHPQDESYWG--NVNPIGVRSCYDEGKRVAETLMFDY- 190
+ VG + ++ TS+ + E WG +G Y K AE + Y
Sbjct: 118 IRHVGGVKAVVNITSDK-----CYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYR 172
Query: 191 --------HRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 242
+ QHG + R N G D R+V + + + +P+ ++ P R
Sbjct: 173 NSFFNPANYGQHGTAVATVRAGNVIGGGDWALD-RIVPDILRAFEQSQPVIIRNPHA-IR 230
Query: 243 SFCYVSDMVDGLIRL-----------MEGENTGPINIGNPGEFTMLE-LAENVKELINPN 290
+ +V + + G + L EG N GP N + T ++ + E + +
Sbjct: 231 PWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGP----NDADATPVKNIVEQMVKYWGEG 286
Query: 291 VEITMVENT-PDDPRQRKPDITKATELLGWEPKIKLRDGL 329
+ N P + K D +KA LGW P+ L L
Sbjct: 287 ASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTL 326
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
N IL+TGG G G V K+++ + I+V + + + PR DV
Sbjct: 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVR 80
Query: 92 EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
+ L VD H A +YNP++ IKTN++G N++ + ++
Sbjct: 81 DLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIAL 140
Query: 147 TSEVYGDPL 155
+++ +P+
Sbjct: 141 STDKAANPI 149
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 21/173 (12%)
Query: 124 NVIGTLNMLGLAKRVGARILLTSTSEVY-GDPLVHPQDESYWGNVNPIGVRSCYDEGKRV 182
N IG N+ ++ VGA+++ ST V+ GD P+ + N PI + Y K
Sbjct: 83 NAIGARNVAVASQLVGAKLVYISTDYVFQGD---RPEGYDEFHNPAPINI---YGASKYA 136
Query: 183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR--GEPLTVQAPGTQ 240
E + + H ++ I +R + ++ YG +NF+ IR E + Q
Sbjct: 137 GEQFVKELHNKYFI-VRTSWLYGKYG-----------NNFVKTMIRLGKEREEISVVADQ 184
Query: 241 TRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEI 293
S YV+D+ + +L+ G ++ N G + E A+ + N V +
Sbjct: 185 IGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNV 237
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 137/336 (40%), Gaps = 46/336 (13%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
ILVTG +G IG+ LV L E + ++ + D +++ G +F I DV+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVI-------ASDIVQRDTGGIKF--ITLDVSNRD 52
Query: 95 LIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVGARILLT 145
I+ +D I+HLA S K +P K N+ GT N+L AK RV ++++
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIP 110
Query: 146 STSEVYGDPLVHPQDESYWGNVNPIGV---RSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
ST V+G E+ V I + R+ + K AE L Y+ + G+++R R
Sbjct: 111 STIGVFG-------PETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLR 163
Query: 203 ----IFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLM 258
I P D V A++ E + Y+ D + L+ L
Sbjct: 164 YPGIISYKAEPTAGTTDYAV--EIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLY 221
Query: 259 EGENTGPI-----NIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKP---DI 310
E + + N+ FT EL +KE I P EI E+ D P D
Sbjct: 222 EADRDKLVLRNGYNV-TAYTFTPSELYSKIKERI-PEFEIEYKEDFRDKIAATWPESLDS 279
Query: 311 TKATELLGWEPKIKLRDGLPLMEDDFRLRLAVPRKN 346
++A+ G+ + L + M D +L + K+
Sbjct: 280 SEASNEWGFSIEYDLDRTIDDMIDHISEKLGIEGKH 315
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 48/231 (20%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
M I++TG GF+G +L K +L H FE+ R E
Sbjct: 1 MNIVITGAKGFVGKNL----------------------KADLTSTTDHHIFEVHRQTKEE 38
Query: 93 PL---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
L L++ D I HLA P K + + + + L++L + A ILL+S+ +
Sbjct: 39 ELESALLKADFIVHLAGVNRPEHDKEFSLGNV-SYLDHVLDILTRNTKKPA-ILLSSSIQ 96
Query: 150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209
D NP G E K E L+ +Y ++G + I R N +G
Sbjct: 97 ATQD--------------NPYG------ESKLQGEQLLREYAEEYGNTVYIYRWPNLFGK 136
Query: 210 RMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEG 260
+ V++ F + R E + V + + YV D+V + R +EG
Sbjct: 137 WCKPNYNSVIATFCYKIARNEEIQVNDRNVEL-TLNYVDDIVAEIKRAIEG 186
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 103/283 (36%), Gaps = 49/283 (17%)
Query: 73 NLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML 132
+LR+WI DV +P D++Y+LA + P T G L +L
Sbjct: 97 SLRRWI----------DVIKP-----DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLL 141
Query: 133 GLAKR------VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186
+ + +SE++G PQ E+ P RS Y K A
Sbjct: 142 EAVRSHTIDSGRTVKYYQAGSSEMFGST-PPPQSET-----TPFHPRSPYAASKCAAHWY 195
Query: 187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC- 245
+Y +G+ +FN PR NF+ + I L G QT+ F
Sbjct: 196 TVNYREAYGLFACNGILFNHESPRRG-------ENFVTRKIT-RALGRIKVGLQTKLFLG 247
Query: 246 ---------YVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPN----VE 292
+ D V+ + +++ E + T+ E + + N VE
Sbjct: 248 NLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVE 307
Query: 293 ITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDD 335
I P + + D +KA E+LGW+P++ + +M D+
Sbjct: 308 IDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDE 350
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 111/305 (36%), Gaps = 77/305 (25%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY----------------FTGSKDNLRK 76
R++V GG G+ G L ++KN EV +VDN D + +
Sbjct: 13 RVMVIGGDGYCG--WATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 77 W--IGHPRFELIRHDVTEPLLI-------EVDQIYHL----ACPASPIFYKYNPVKTIKT 123
W + EL D+ + + E D + H + P S I + V T
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMI-DRSRAVYTQHN 129
Query: 124 NVIGTLNMLGLAKRVGARILLTSTSEV--YGDP-------------------LVHPQDES 162
NVIGTLN+L K G L + YG P L +P+ S
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 163 YWGNVNPIG-----VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-- 215
+ +++ + +C G R + + +G++ + R++ D
Sbjct: 190 SFYHLSKVHDSHNIAFTCKAWGIRATD---LNQGVVYGVKTDETEMHEELRNRLDYDAVF 246
Query: 216 GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNP---G 272
G ++ F QA G PLTV G QTR + + D V + I I NP G
Sbjct: 247 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCV----------EIAIANPAKAG 296
Query: 273 EFTML 277
EF +
Sbjct: 297 EFRVF 301
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 116/311 (37%), Gaps = 67/311 (21%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY----------------FTGSKDNLRK 76
R++V GG G+ G L ++KN EV +VDN D + +
Sbjct: 3 RVMVIGGDGYCG--WATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 77 W--IGHPRFELIRHDVTEPLLI-------EVDQIYHL----ACPASPIFYKYNPVKTIKT 123
W + EL D+ + + E D + H + P S I + V T
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMI-DRSRAVYTQHN 119
Query: 124 NVIGTLNMLGLAKRVGARILLTSTSEV--YGDP-------------------LVHPQDES 162
NVIGTLN+L K G L + YG P L +P+ S
Sbjct: 120 NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 179
Query: 163 YWGNVNPIG-----VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-- 215
+ +++ + +C G R + + +G++ + R++ D
Sbjct: 180 SFYHLSKVHDSHNIAFTCKAWGIRATD---LNQGVVYGVKTDETEMHEELRNRLDYDAVF 236
Query: 216 GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGL-IRLMEGENTGPINIGN--PG 272
G ++ F QA G PLTV G QTR + + D V + I + G + N
Sbjct: 237 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTE 296
Query: 273 EFTMLELAENV 283
+F++ ELA V
Sbjct: 297 QFSVNELASLV 307
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 111/305 (36%), Gaps = 77/305 (25%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY----------------FTGSKDNLRK 76
R++V GG G+ G L ++KN EV +VDN D + +
Sbjct: 13 RVMVIGGDGYCG--WATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 77 W--IGHPRFELIRHDVTEPLLI-------EVDQIYHL----ACPASPIFYKYNPVKTIKT 123
W + EL D+ + + E D + H + P S I + V T
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMI-DRSRAVYTQHN 129
Query: 124 NVIGTLNMLGLAKRVGARILLTSTSEV--YGDP-------------------LVHPQDES 162
NVIGTLN+L K G L + YG P L +P+ S
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 163 YWGNVNPIG-----VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-- 215
+ +++ + +C G R + + +G++ + R++ D
Sbjct: 190 SFYHLSKVHDSHNIAFTCKAWGIRATD---LNQGVVYGVKTDETEMHEELRNRLDYDAVF 246
Query: 216 GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNP---G 272
G ++ F QA G PLTV G QTR + + D V + I I NP G
Sbjct: 247 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCV----------EIAIANPAKAG 296
Query: 273 EFTML 277
EF +
Sbjct: 297 EFRVF 301
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 90/229 (39%), Gaps = 48/229 (20%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
I++TG GF+G +L K +L H FE+ R E L
Sbjct: 3 IVITGAKGFVGKNL----------------------KADLTSTTDHHIFEVHRQTKEEEL 40
Query: 95 ---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151
L++ D I HLA P K + + + + L++L + A ILL+S+ +
Sbjct: 41 ESALLKADFIVHLAGVNRPEHDKEFSLGNV-SYLDHVLDILTRNTKKPA-ILLSSSIQAT 98
Query: 152 GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRM 211
D NP G E K E L+ +Y ++G + I R N +G
Sbjct: 99 QD--------------NPYG------ESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWC 138
Query: 212 NIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEG 260
+ V++ F + R E + V + + YV D+V + R +EG
Sbjct: 139 KPNYNSVIATFCYKIARNEEIQVNDRNVEL-TLNYVDDIVAEIKRAIEG 186
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 134/342 (39%), Gaps = 42/342 (12%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWIG-HPRFELIRH 88
S R L+TG G G++L L+E + EV D +G + R K +G ++I
Sbjct: 2 SGKRALITGIRGQDGAYLAKLLLE-KGYEVYGADRR-SGEFASWRLKELGIENDVKIIHM 59
Query: 89 DVTE-------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--G 139
D+ E ++ D++Y+LA + P+ T + + IG L +L + V
Sbjct: 60 DLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPD 119
Query: 140 ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIR 199
+ STSE++G PQ E P RS Y K + +Y + +
Sbjct: 120 TKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAKLFGHWITVNYREAYNMFAC 174
Query: 200 IARIFNTYGPRMNID-DGRVVSNFIAQAIRG-EPLTVQAPGTQTRSFCYVSDMVDGLIRL 257
+FN P I+ R ++ +A+ G + V R + Y + V+ + +
Sbjct: 175 SGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLM 234
Query: 258 MEGENTGPINIGNPGEFTMLELAENVKEL----------------INPNVEITMVENTPD 301
M+ I T+ E E ++ I+ N +VE + +
Sbjct: 235 MQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEE 294
Query: 302 DPRQRKPDI-----TKATELLGWEPKIKLRDGLP-LMEDDFR 337
R + DI KA + LGW+P+ + + +ME D +
Sbjct: 295 FFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLK 336
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 77/343 (22%), Positives = 135/343 (39%), Gaps = 58/343 (16%)
Query: 35 ILVTGGAGFIGSHLVDKLME-------------NEKNEVIVVDNYFTGSKDNLRKWIGHP 81
+ VTG +GFIGS LV +L+E N K ++D ++ +L W
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLD--LPKAETHLTLW---- 61
Query: 82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV-KTIKTNVIGTLNMLGLAKRVGA 140
+ +L + + ++H+A P F +P + IK + G MLG+ K A
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMD--FESKDPENEVIKPTIEG---MLGIMKSCAA 116
Query: 141 -----RILLTSTSEVYG--DPLVHPQDESYWGNVNPIGVRS----CYDEGKRVAETLMFD 189
R++ TS++ + + DES W ++ + Y K +AE +
Sbjct: 117 AKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWK 176
Query: 190 YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS------ 243
Y +++ I+ F T P + VV FI ++ +T +P T +
Sbjct: 177 YAKENNID------FITIIPTL------VVGPFIMSSMPPSLITALSPITGNEAHYSIIR 224
Query: 244 ---FCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTP 300
F ++ D+ + I L E I + + +L+LA+ ++E P I
Sbjct: 225 QGQFVHLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKY-PEYNIPTEFKGV 283
Query: 301 DDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDFRLRLAVP 343
D+ + +K LG+E K L D D R + +P
Sbjct: 284 DENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAKGLLP 326
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 19/182 (10%)
Query: 34 RILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHP-RFELIRHDV 90
R+ VTGG GF+GS ++ L+EN N I D L G + D+
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 91 TEP--LLIEVDQIYHLACPASPIFYKYNPVKTI--KTNVIGTLNMLGL---AKRVGARIL 143
+ P ++ + ASPI + + + I K V G L +L +K V I
Sbjct: 63 SNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIY 122
Query: 144 LTSTSEV-YGDPLVHPQDESYWGNVN------PIGVRSCYDEGKRVAETLMFDYHRQHGI 196
+S S V + DES W +V+ P G Y K +AE + ++ Q+GI
Sbjct: 123 TSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWN--YAVSKTLAEKAVLEFGEQNGI 180
Query: 197 EI 198
++
Sbjct: 181 DV 182
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/319 (20%), Positives = 127/319 (39%), Gaps = 23/319 (7%)
Query: 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL 95
LVTG G G++L L+E +V + ++ LR+ + D+ +
Sbjct: 18 LVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACS 77
Query: 96 IEV-------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTS 146
++ ++Y+LA + PV T + +G ++L ++ R S
Sbjct: 78 VQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS 137
Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
TSE++G QDE+ P RS Y K + +Y G+ +FN
Sbjct: 138 TSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNH 192
Query: 207 YGPRMNIDD-GRVVSNFIAQAIRGEPLTVQAPGTQT-RSFCYVSDMVDGLIRLMEGENTG 264
P I+ R V++ +A+ G+ ++ R + + D V+ + +++ +
Sbjct: 193 ESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKAD 252
Query: 265 PINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDI-----TKATELLGW 319
+ T+ ++ + E + + ++ P R + D+ KA +LGW
Sbjct: 253 DYVVATGVTTTVRDMCQIAFEHVGLDYR-DFLKIDPAFFRPAEVDVLLGNPAKAQRVLGW 311
Query: 320 EPKIKLRDGLPLM-EDDFR 337
+P+ L + + +M E D R
Sbjct: 312 KPRTSLDELIRMMVEADLR 330
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 35/187 (18%)
Query: 37 VTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-------PRFELIRHD 89
V GG GF+ S LV L+ +K + N DN +K + H ++ R D
Sbjct: 14 VVGGTGFVASLLVKLLL--QKGYAV---NTTVRDPDNQKK-VSHLLELQELGDLKIFRAD 67
Query: 90 VTEPLLIE-----VDQIYHLACPASPIFYKYNPVK-TIKTNVIGTLNMLGLAKRVGA--R 141
+T+ L E D ++H+A P F +P IK + G +N++ R + R
Sbjct: 68 LTDELSFEAPIAGCDFVFHVATPVH--FASEDPENDMIKPAIQGVVNVMKACTRAKSVKR 125
Query: 142 ILLTSTS------EVYGDPLVHPQDESYWGNVNPIGVRS----CYDEGKRVAETLMFDYH 191
++LTS++ ++ G LV DE W ++ + Y K +AE + +
Sbjct: 126 VILTSSAAAVTINQLDGTGLV--VDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFA 183
Query: 192 RQHGIEI 198
++ I++
Sbjct: 184 EENNIDL 190
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 18/126 (14%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRK-W-IGHP-RFE------ 84
+LVTG GF+ SH+V++L+E+ V + SK NL+K W +P RFE
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYK---VRGTARSASKLANLQKRWDAKYPGRFETAVVED 70
Query: 85 LIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RI 142
+++ + ++ + H+A S KY+ V + + GTLN L A + R
Sbjct: 71 MLKQGAYDEVIKGAAGVAHIASVVS-FSNKYDEV--VTPAIGGTLNALRAAAATPSVKRF 127
Query: 143 LLTSTS 148
+LTS++
Sbjct: 128 VLTSST 133
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 16/175 (9%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
R+LVTG AG +GS + L +EV + D G+ + + + +L
Sbjct: 4 RLLVTGAAGGVGSAIRPHL-GTLAHEVRLSDIVDLGAAEAHEEIVA---CDLADAQAVHD 59
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG 152
L+ + D I HL + +N + ++ N+IG N+ A+ +G RI+ S++ G
Sbjct: 60 LVKDCDGIIHLG--GVSVERPWNDI--LQANIIGAYNLYEAARNLGKPRIVFASSNHTIG 115
Query: 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE---IRIARIF 204
+P+ V P S Y K E L Y+ + IE IRI F
Sbjct: 116 ---YYPRTTRIDTEV-PRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCF 166
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRK-W-IGHP-RFE------ 84
+LVTG GF+ SH+V++L+E+ V + SK NL+K W +P RFE
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYK---VRGTARSASKLANLQKRWDAKYPGRFETAVVED 70
Query: 85 LIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RI 142
++ + ++ + H+A S KY+ V + + GTLN L A + R
Sbjct: 71 XLKQGAYDEVIKGAAGVAHIASVVS-FSNKYDEV--VTPAIGGTLNALRAAAATPSVKRF 127
Query: 143 LLTSTS 148
+LTS++
Sbjct: 128 VLTSST 133
>pdb|3PVZ|A Chain A, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
pdb|3PVZ|B Chain B, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
pdb|3PVZ|C Chain C, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
pdb|3PVZ|D Chain D, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
Length = 399
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 80/232 (34%), Gaps = 49/232 (21%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-----------------NYFTGSKDN 73
S R LV GGAG IG + ++ + ++ VVD Y G
Sbjct: 34 SQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDISENNXVELVRDIRSSFGYINGDFQT 93
Query: 74 LRKWIGHPRFE-LIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML 132
IG ++ I+ D ++ + + H+ P + + I NV T +
Sbjct: 94 FALDIGSIEYDAFIKADGQYDYVLNLSALKHVRSEKDP----FTLXRXIDVNVFNTDKTI 149
Query: 133 GLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR 192
+ GA+ +++ +P VN G KR+ E + +
Sbjct: 150 QQSIDAGAKKYFCVSTDKAANP------------VNXXGA------SKRIXEXFL--XRK 189
Query: 193 QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF 244
I I AR N + DG ++ F + + +P+ AP R F
Sbjct: 190 SEEIAISTARFAN-----VAFSDGSLLHGFNQRIQKNQPIV--APNDIKRYF 234
>pdb|2YDX|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|B Chain B, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|C Chain C, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|D Chain D, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|E Chain E, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
Length = 315
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 21/127 (16%)
Query: 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR---- 87
N R+LVTG G +G + + +N + V R+ P+FE +
Sbjct: 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGC----------GFRR--ARPKFEQVNLLDS 49
Query: 88 ---HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 144
H + V I H A P + P + NV + N+ A VGA ++
Sbjct: 50 NAVHHIIHDFQPHV--IVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIY 107
Query: 145 TSTSEVY 151
S+ V+
Sbjct: 108 ISSDYVF 114
>pdb|4E4Y|A Chain A, The Crystal Structure Of A Short Chain Dehydrogenase
Family Protein From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 244
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR 75
LVTGG+ IG +V+ L++N+ + VI +D + S +NL+
Sbjct: 8 LVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLK 47
>pdb|3UYC|A Chain A, Designed Protein Ke59 R8_27A
pdb|3UYC|B Chain B, Designed Protein Ke59 R8_27A
Length = 249
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 30/112 (26%)
Query: 60 VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPI 111
++ + YF GS ++LRK I V+ P+L+ ++D Y+L +
Sbjct: 82 ILTEEKYFNGSYEDLRK---------IASSVSIPILMWDIIVKESQIDDAYNLGADTVGL 132
Query: 112 FYKYNPVKTIKT-------------NVIGTLNMLGLAKRVGARILLTSTSEV 150
K + +K+ VI N L +A R+GAR ++ S+ ++
Sbjct: 133 IVKILTERELKSLLEYARSYGMEPAIVINDENDLDIALRIGARFIIISSHDL 184
>pdb|1TA3|B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
Length = 303
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW 77
+ V G + G+ L++N +NE IV + + +N KW
Sbjct: 8 LFVAAGKSYFGTCSDQALLQNSQNEAIVASQFGVITPENSMKW 50
>pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
pdb|2YY7|B Chain B, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
Length = 312
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 90/240 (37%), Gaps = 23/240 (9%)
Query: 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----KWIGHPRFELIR 87
N +IL+ G G IG+ L KL + E ++ + + D + + + F I
Sbjct: 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIE 61
Query: 88 HDVTEPLLIEVDQ---IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 144
H L+EV + IY +A S K NP N+ ++L LAK + +
Sbjct: 62 H------LVEVHKITDIYLMAALLSATAEK-NPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114
Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR-- 202
+S P ++ + + P + Y K+ E YH +G+++R R
Sbjct: 115 WPSSIAVFGPTTPKENTPQYTIMEP---STVYGISKQAGERWCEYYHNIYGVDVRSIRYP 171
Query: 203 --IFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEG 260
I + P D V + +AI + Y+ D +D I +M+
Sbjct: 172 GLISWSTPPGGGTTDYAV--DIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKA 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,064,497
Number of Sequences: 62578
Number of extensions: 479850
Number of successful extensions: 1329
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 110
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)