Query 019061
Match_columns 346
No_of_seqs 343 out of 3825
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02772 guanylate kinase 100.0 1.4E-46 3.1E-51 359.2 28.5 315 1-317 1-319 (398)
2 COG0194 Gmk Guanylate kinase [ 100.0 6.3E-34 1.4E-38 244.6 19.3 181 132-317 3-183 (191)
3 COG1162 Predicted GTPases [Gen 100.0 2.9E-34 6.4E-39 265.0 10.7 181 25-209 37-253 (301)
4 PRK14737 gmk guanylate kinase; 100.0 8.2E-30 1.8E-34 224.8 18.6 180 132-315 3-183 (186)
5 PF00625 Guanylate_kin: Guanyl 100.0 6.3E-29 1.4E-33 218.7 17.2 182 132-316 1-182 (183)
6 smart00072 GuKc Guanylate kina 100.0 4.4E-28 9.6E-33 213.5 19.7 181 133-316 2-182 (184)
7 KOG0609 Calcium/calmodulin-dep 99.9 2E-25 4.3E-30 216.4 19.4 282 47-331 242-542 (542)
8 PRK12288 GTPase RsgA; Reviewed 99.9 2.7E-26 5.8E-31 220.2 11.5 184 22-209 62-294 (347)
9 PRK12289 GTPase RsgA; Reviewed 99.9 9.8E-26 2.1E-30 216.4 13.1 154 30-187 49-232 (352)
10 cd01854 YjeQ_engC YjeQ/EngC. 99.9 2.3E-25 5E-30 209.3 12.6 163 21-187 19-221 (287)
11 PRK00098 GTPase RsgA; Reviewed 99.9 5.2E-25 1.1E-29 208.0 14.5 201 21-225 22-276 (298)
12 PRK14738 gmk guanylate kinase; 99.9 7.3E-24 1.6E-28 190.0 19.8 184 130-317 10-195 (206)
13 TIGR00157 ribosome small subun 99.9 1.6E-24 3.5E-29 199.1 12.9 172 33-209 1-208 (245)
14 KOG0707 Guanylate kinase [Nucl 99.9 1.1E-23 2.4E-28 186.7 15.4 187 130-316 34-221 (231)
15 PRK01889 GTPase RsgA; Reviewed 99.9 7.2E-24 1.6E-28 204.7 13.0 152 30-186 66-254 (356)
16 TIGR03263 guanyl_kin guanylate 99.9 1.1E-22 2.4E-27 178.0 18.8 179 133-315 1-179 (180)
17 PRK00300 gmk guanylate kinase; 99.9 3.6E-22 7.9E-27 178.4 18.4 183 131-317 3-185 (205)
18 cd00071 GMPK Guanosine monopho 99.8 4.2E-19 9.1E-24 149.1 12.7 120 135-254 1-120 (137)
19 PRK10078 ribose 1,5-bisphospho 99.7 8.4E-17 1.8E-21 141.9 17.8 177 133-320 2-180 (186)
20 TIGR02322 phosphon_PhnN phosph 99.7 6.3E-15 1.4E-19 128.8 17.1 173 133-315 1-177 (179)
21 COG1116 TauB ABC-type nitrate/ 99.7 4.3E-17 9.3E-22 146.9 3.2 183 113-308 9-196 (248)
22 COG3709 Uncharacterized compon 99.6 2.3E-14 5E-19 120.5 15.7 178 132-317 4-183 (192)
23 COG3839 MalK ABC-type sugar tr 99.6 1.2E-16 2.7E-21 151.5 0.5 185 112-308 8-199 (338)
24 COG3842 PotA ABC-type spermidi 99.6 5.5E-16 1.2E-20 147.8 2.1 188 112-311 10-205 (352)
25 COG1125 OpuBA ABC-type proline 99.6 3.6E-16 7.8E-21 140.6 0.4 186 111-309 5-202 (309)
26 COG1126 GlnQ ABC-type polar am 99.5 8.5E-15 1.8E-19 129.1 6.7 188 112-336 7-199 (240)
27 PRK08356 hypothetical protein; 99.5 6E-13 1.3E-17 118.2 14.7 176 133-317 5-193 (195)
28 COG1136 SalX ABC-type antimicr 99.5 6.4E-14 1.4E-18 125.9 8.2 177 122-334 20-204 (226)
29 COG1127 Ttg2A ABC-type transpo 99.4 9.7E-15 2.1E-19 130.5 -1.4 186 111-308 12-211 (263)
30 COG1118 CysA ABC-type sulfate/ 99.4 7E-14 1.5E-18 129.0 3.4 187 112-310 7-205 (345)
31 COG1131 CcmA ABC-type multidru 99.4 4.1E-13 8.9E-18 126.7 8.6 97 112-213 9-109 (293)
32 COG4555 NatA ABC-type Na+ tran 99.4 5E-13 1.1E-17 116.7 7.7 187 112-340 6-200 (245)
33 COG3638 ABC-type phosphate/pho 99.4 9.7E-13 2.1E-17 117.5 9.5 192 112-341 8-216 (258)
34 COG2884 FtsE Predicted ATPase 99.4 1.2E-12 2.5E-17 113.4 9.2 185 112-333 6-197 (223)
35 COG1117 PstB ABC-type phosphat 99.4 2.8E-12 6E-17 113.0 11.3 186 117-337 17-212 (253)
36 COG0410 LivF ABC-type branched 99.4 6.4E-12 1.4E-16 112.1 13.5 162 114-319 10-184 (237)
37 COG4152 ABC-type uncharacteriz 99.4 9.7E-14 2.1E-18 124.3 1.5 185 111-308 6-195 (300)
38 COG4175 ProV ABC-type proline/ 99.3 1.2E-12 2.6E-17 121.2 6.7 186 112-308 33-230 (386)
39 PRK11432 fbpC ferric transport 99.3 1.9E-13 4.2E-18 132.0 1.5 181 114-306 13-200 (351)
40 PRK11650 ugpC glycerol-3-phosp 99.3 2.3E-13 4.9E-18 131.7 1.2 181 115-307 11-199 (356)
41 TIGR03265 PhnT2 putative 2-ami 99.3 2.5E-13 5.3E-18 131.4 1.3 182 114-307 11-199 (353)
42 TIGR01186 proV glycine betaine 99.3 4.8E-12 1E-16 122.6 9.5 93 116-213 2-102 (363)
43 PRK09452 potA putrescine/sperm 99.3 3.2E-13 7E-18 131.4 1.0 182 114-307 21-209 (375)
44 COG1120 FepC ABC-type cobalami 99.3 1.5E-11 3.3E-16 112.7 11.7 183 116-341 11-207 (258)
45 COG0411 LivG ABC-type branched 99.3 1.6E-12 3.6E-17 116.7 5.2 197 111-340 8-217 (250)
46 PRK11607 potG putrescine trans 99.3 4.9E-13 1.1E-17 130.3 1.1 183 114-308 26-215 (377)
47 PRK13537 nodulation ABC transp 99.3 1.3E-11 2.8E-16 117.3 10.0 98 112-214 12-112 (306)
48 TIGR03258 PhnT 2-aminoethylpho 99.3 7.3E-13 1.6E-17 128.4 1.6 183 114-307 12-203 (362)
49 TIGR01188 drrA daunorubicin re 99.3 1.2E-11 2.7E-16 117.2 9.4 92 117-213 3-97 (302)
50 COG1137 YhbG ABC-type (unclass 99.3 1.3E-11 2.9E-16 107.7 8.2 173 111-319 8-187 (243)
51 PRK11000 maltose/maltodextrin 99.3 1.2E-12 2.7E-17 127.3 1.8 180 115-306 11-197 (369)
52 TIGR03415 ABC_choXWV_ATP choli 99.3 1.4E-12 3.1E-17 126.9 2.1 90 112-206 29-130 (382)
53 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.3 7.1E-13 1.5E-17 119.5 -0.1 71 120-191 17-95 (218)
54 PRK13536 nodulation factor exp 99.3 1.9E-11 4.2E-16 117.7 9.4 97 112-213 46-145 (340)
55 cd03294 ABC_Pro_Gly_Bertaine T 99.3 6E-11 1.3E-15 110.6 12.4 81 110-191 27-115 (269)
56 COG4525 TauB ABC-type taurine 99.3 4.1E-12 8.9E-17 110.5 4.1 169 126-307 24-197 (259)
57 COG1135 AbcC ABC-type metal io 99.2 2.5E-11 5.4E-16 112.5 9.4 160 121-284 20-190 (339)
58 cd03259 ABC_Carb_Solutes_like 99.2 2.9E-11 6.3E-16 108.6 9.6 188 116-340 9-198 (213)
59 cd03226 ABC_cobalt_CbiO_domain 99.2 8.9E-13 1.9E-17 117.8 -0.3 179 120-340 13-193 (205)
60 PRK10851 sulfate/thiosulfate t 99.2 1.6E-12 3.4E-17 125.8 1.3 181 115-307 10-201 (353)
61 COG3840 ThiQ ABC-type thiamine 99.2 1.3E-12 2.9E-17 112.3 0.4 166 128-308 20-195 (231)
62 TIGR02314 ABC_MetN D-methionin 99.2 4.2E-11 9E-16 115.3 10.6 81 121-206 19-106 (343)
63 cd03269 ABC_putative_ATPase Th 99.2 2.4E-12 5.2E-17 115.4 1.9 74 117-191 10-83 (210)
64 PRK10070 glycine betaine trans 99.2 4.3E-11 9.4E-16 117.3 10.6 91 111-206 32-130 (400)
65 cd03293 ABC_NrtD_SsuB_transpor 99.2 9.8E-11 2.1E-15 105.8 12.0 70 120-191 17-86 (220)
66 COG1124 DppF ABC-type dipeptid 99.2 2.6E-11 5.7E-16 108.9 8.1 65 122-187 22-91 (252)
67 cd03224 ABC_TM1139_LivF_branch 99.2 1.2E-10 2.6E-15 105.2 12.4 76 116-192 9-89 (222)
68 cd03261 ABC_Org_Solvent_Resist 99.2 4.6E-12 1E-16 115.6 3.2 75 116-191 9-90 (235)
69 cd03219 ABC_Mj1267_LivG_branch 99.2 2.1E-12 4.6E-17 117.8 0.7 76 116-192 9-89 (236)
70 TIGR03740 galliderm_ABC gallid 99.2 3.7E-12 8.1E-17 115.3 2.3 74 117-191 10-83 (223)
71 TIGR03522 GldA_ABC_ATP gliding 99.2 3E-11 6.5E-16 114.5 8.3 94 115-213 10-106 (301)
72 cd03268 ABC_BcrA_bacitracin_re 99.2 4.1E-12 8.8E-17 113.8 2.3 84 117-205 10-95 (208)
73 cd03265 ABC_DrrA DrrA is the A 99.2 3.4E-12 7.3E-17 115.3 1.7 75 116-191 9-86 (220)
74 COG4148 ModC ABC-type molybdat 99.2 7.3E-12 1.6E-16 114.3 3.9 180 115-309 8-195 (352)
75 COG1122 CbiO ABC-type cobalt t 99.2 7.4E-12 1.6E-16 114.1 4.0 177 121-308 18-204 (235)
76 cd03258 ABC_MetN_methionine_tr 99.2 2.5E-12 5.3E-17 117.2 0.7 70 121-191 19-95 (233)
77 PRK11153 metN DL-methionine tr 99.2 3.3E-11 7.2E-16 116.3 8.1 82 120-206 18-106 (343)
78 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 4.7E-12 1E-16 115.6 1.7 72 115-187 12-84 (254)
79 PRK14530 adenylate kinase; Pro 99.2 6.4E-10 1.4E-14 100.2 15.6 54 262-315 155-212 (215)
80 TIGR01288 nodI ATP-binding ABC 99.2 7.4E-11 1.6E-15 111.9 9.9 87 114-205 11-100 (303)
81 COG4181 Predicted ABC-type tra 99.2 1.4E-10 3E-15 99.1 10.3 171 120-335 23-209 (228)
82 TIGR00960 3a0501s02 Type II (G 99.2 1.3E-10 2.7E-15 104.7 10.7 182 121-340 17-205 (216)
83 cd03218 ABC_YhbG The ABC trans 99.2 6.7E-12 1.5E-16 114.2 2.3 77 115-192 8-89 (232)
84 PRK14531 adenylate kinase; Pro 99.2 1.6E-09 3.4E-14 95.3 17.0 91 224-314 79-182 (183)
85 cd03295 ABC_OpuCA_Osmoprotecti 99.2 8.6E-12 1.9E-16 114.3 2.4 70 121-191 15-88 (242)
86 PRK14526 adenylate kinase; Pro 99.2 7.3E-10 1.6E-14 99.7 14.8 92 224-316 78-209 (211)
87 PF03193 DUF258: Protein of un 99.2 4E-11 8.7E-16 102.7 6.4 99 110-209 4-124 (161)
88 cd03296 ABC_CysA_sulfate_impor 99.2 9.2E-12 2E-16 114.0 2.6 76 115-191 10-87 (239)
89 cd03225 ABC_cobalt_CbiO_domain 99.2 8.1E-11 1.8E-15 105.5 8.6 183 120-340 14-201 (211)
90 cd03263 ABC_subfamily_A The AB 99.2 5.1E-11 1.1E-15 107.5 7.3 71 120-191 15-88 (220)
91 TIGR03608 L_ocin_972_ABC putat 99.2 2.7E-12 5.9E-17 114.6 -1.0 178 116-335 7-196 (206)
92 cd03235 ABC_Metallic_Cations A 99.2 1.4E-10 3E-15 104.2 9.9 74 113-188 5-78 (213)
93 TIGR02673 FtsE cell division A 99.2 1.2E-10 2.5E-15 104.7 9.4 182 121-340 16-204 (214)
94 PLN02674 adenylate kinase 99.2 4.8E-10 1E-14 102.6 13.4 166 133-314 31-243 (244)
95 KOG3079 Uridylate kinase/adeny 99.2 3.2E-10 6.9E-15 97.7 11.3 170 132-316 7-193 (195)
96 PRK11629 lolD lipoprotein tran 99.2 9E-12 1.9E-16 113.6 1.9 70 121-191 23-100 (233)
97 TIGR03410 urea_trans_UrtE urea 99.2 5.7E-10 1.2E-14 101.4 13.7 75 116-191 9-88 (230)
98 PRK11248 tauB taurine transpor 99.2 2.2E-10 4.8E-15 106.0 11.1 73 117-191 11-83 (255)
99 cd03264 ABC_drug_resistance_li 99.2 8.8E-12 1.9E-16 111.8 1.7 74 117-192 10-86 (211)
100 cd03301 ABC_MalK_N The N-termi 99.2 3.1E-10 6.7E-15 101.9 11.8 73 117-190 10-84 (213)
101 TIGR02211 LolD_lipo_ex lipopro 99.2 8.8E-12 1.9E-16 112.6 1.6 70 121-191 19-96 (221)
102 PRK14527 adenylate kinase; Pro 99.1 1.5E-09 3.3E-14 96.0 15.5 168 131-314 4-190 (191)
103 cd03266 ABC_NatA_sodium_export 99.1 1.6E-10 3.6E-15 104.0 9.4 181 121-339 19-202 (218)
104 cd03260 ABC_PstB_phosphate_tra 99.1 8.7E-12 1.9E-16 113.1 1.1 83 117-205 10-103 (227)
105 cd03292 ABC_FtsE_transporter F 99.1 2.9E-10 6.3E-15 102.1 10.7 182 121-340 15-203 (214)
106 cd03267 ABC_NatA_like Similar 99.1 2.9E-10 6.2E-15 104.0 10.6 51 115-166 29-79 (236)
107 PRK10908 cell division protein 99.1 3.9E-10 8.5E-15 102.0 11.4 183 120-340 15-204 (222)
108 PRK14250 phosphate ABC transpo 99.1 1.8E-11 3.9E-16 112.2 2.5 74 117-191 13-90 (241)
109 cd03256 ABC_PhnC_transporter A 99.1 1.4E-11 3.1E-16 112.6 1.7 71 120-191 14-91 (241)
110 PRK11144 modC molybdate transp 99.1 8.9E-12 1.9E-16 120.6 0.2 158 115-281 8-174 (352)
111 TIGR02142 modC_ABC molybdenum 99.1 1.1E-11 2.4E-16 120.0 0.9 177 116-306 8-195 (354)
112 PRK13808 adenylate kinase; Pro 99.1 1.3E-09 2.9E-14 103.7 14.7 94 224-318 78-195 (333)
113 PRK13539 cytochrome c biogenes 99.1 8.3E-12 1.8E-16 111.9 -0.4 49 116-165 11-59 (207)
114 PRK11247 ssuB aliphatic sulfon 99.1 4.9E-10 1.1E-14 103.9 11.2 75 115-191 20-94 (257)
115 PRK13538 cytochrome c biogenes 99.1 1.4E-11 3.1E-16 110.1 0.9 50 116-166 10-59 (204)
116 TIGR01360 aden_kin_iso1 adenyl 99.1 1.5E-09 3.2E-14 95.1 13.5 172 133-316 3-187 (188)
117 TIGR03864 PQQ_ABC_ATP ABC tran 99.1 1.7E-11 3.7E-16 112.0 1.1 75 116-191 10-87 (236)
118 TIGR03411 urea_trans_UrtD urea 99.1 1.5E-11 3.3E-16 112.6 0.7 76 115-191 10-90 (242)
119 TIGR01166 cbiO cobalt transpor 99.1 7.8E-10 1.7E-14 97.6 11.5 66 121-187 6-77 (190)
120 PRK10247 putative ABC transpor 99.1 1.4E-11 3E-16 111.9 0.0 76 114-190 14-93 (225)
121 cd03262 ABC_HisP_GlnQ_permease 99.1 8.8E-10 1.9E-14 98.9 11.8 186 117-340 10-202 (213)
122 cd03257 ABC_NikE_OppD_transpor 99.1 1.6E-11 3.5E-16 111.2 0.5 66 121-187 19-91 (228)
123 TIGR02315 ABC_phnC phosphonate 99.1 4.7E-10 1E-14 102.7 10.1 71 120-191 15-92 (243)
124 cd03298 ABC_ThiQ_thiamine_tran 99.1 1.7E-11 3.7E-16 110.0 0.5 175 125-340 16-196 (211)
125 PRK13635 cbiO cobalt transport 99.1 1.9E-11 4.1E-16 114.6 0.6 65 122-187 22-90 (279)
126 PRK10584 putative ABC transpor 99.1 2.5E-11 5.5E-16 110.1 1.3 69 122-191 25-101 (228)
127 PRK10895 lipopolysaccharide AB 99.1 1.6E-11 3.5E-16 112.4 0.0 77 114-191 10-91 (241)
128 COG4604 CeuD ABC-type enteroch 99.1 1.2E-10 2.6E-15 101.6 5.3 173 110-287 4-187 (252)
129 TIGR02868 CydC thiol reductant 99.1 6.8E-10 1.5E-14 113.1 11.8 175 122-331 350-527 (529)
130 PRK11264 putative amino-acid A 99.1 1.5E-11 3.3E-16 113.2 -0.4 76 115-191 11-98 (250)
131 cd03300 ABC_PotA_N PotA is an 99.1 4.1E-11 8.8E-16 109.2 2.3 74 117-191 10-85 (232)
132 PLN02459 probable adenylate ki 99.1 2.1E-09 4.6E-14 99.0 13.5 169 134-315 30-250 (261)
133 PRK13543 cytochrome c biogenes 99.1 1.3E-11 2.8E-16 111.1 -1.1 75 115-190 19-94 (214)
134 PRK13637 cbiO cobalt transport 99.1 5.9E-10 1.3E-14 105.0 10.0 65 122-187 22-92 (287)
135 PRK09536 btuD corrinoid ABC tr 99.1 2.8E-10 6.1E-15 111.7 8.0 77 113-190 9-89 (402)
136 PRK15079 oligopeptide ABC tran 99.1 8.9E-10 1.9E-14 105.8 11.2 66 121-187 35-107 (331)
137 PRK11831 putative ABC transpor 99.1 4.9E-11 1.1E-15 111.2 2.4 76 115-191 15-97 (269)
138 PRK11614 livF leucine/isoleuci 99.1 8.9E-10 1.9E-14 100.7 10.5 76 115-191 13-93 (237)
139 TIGR00968 3a0106s01 sulfate AB 99.1 5.2E-11 1.1E-15 108.9 2.4 74 117-191 10-85 (237)
140 PRK13548 hmuV hemin importer A 99.1 9.3E-10 2E-14 102.0 10.5 73 116-189 11-87 (258)
141 PRK09493 glnQ glutamine ABC tr 99.1 1.3E-09 2.7E-14 99.8 11.1 75 116-191 10-90 (240)
142 PRK15439 autoinducer 2 ABC tra 99.1 3.1E-11 6.7E-16 122.5 0.4 163 113-280 17-185 (510)
143 TIGR02982 heterocyst_DevA ABC 99.1 1.9E-09 4.2E-14 97.3 12.0 173 120-334 18-203 (220)
144 PRK11300 livG leucine/isoleuci 99.0 4.9E-11 1.1E-15 110.1 1.6 77 115-192 13-94 (255)
145 PRK14529 adenylate kinase; Pro 99.0 3.6E-09 7.9E-14 95.7 13.5 163 135-314 2-222 (223)
146 TIGR01351 adk adenylate kinase 99.0 3.5E-09 7.6E-14 95.1 13.3 90 224-314 78-209 (210)
147 PRK10253 iron-enterobactin tra 99.0 2.6E-11 5.6E-16 112.8 -0.7 75 115-190 15-93 (265)
148 cd03297 ABC_ModC_molybdenum_tr 99.0 1.7E-11 3.8E-16 110.2 -1.8 75 113-191 6-88 (214)
149 PRK10762 D-ribose transporter 99.0 3.2E-11 6.9E-16 122.1 -0.2 79 113-192 10-93 (501)
150 PRK00279 adk adenylate kinase; 99.0 7.6E-09 1.6E-13 93.3 15.3 91 225-316 79-214 (215)
151 TIGR00972 3a0107s01c2 phosphat 99.0 5.9E-11 1.3E-15 109.1 1.6 74 117-191 11-95 (247)
152 TIGR03005 ectoine_ehuA ectoine 99.0 1.7E-09 3.7E-14 99.7 11.3 46 117-162 10-55 (252)
153 PRK13647 cbiO cobalt transport 99.0 1.5E-09 3.3E-14 101.5 11.0 66 121-187 19-88 (274)
154 PRK14528 adenylate kinase; Pro 99.0 3.7E-09 8E-14 93.3 12.8 88 224-312 79-184 (186)
155 PRK11124 artP arginine transpo 99.0 1.8E-09 3.8E-14 99.0 11.1 75 116-191 11-95 (242)
156 PRK13634 cbiO cobalt transport 99.0 5.6E-11 1.2E-15 112.0 1.2 65 122-187 22-94 (290)
157 TIGR01189 ccmA heme ABC export 99.0 4.5E-11 9.7E-16 106.3 0.3 177 116-334 9-188 (198)
158 PLN02200 adenylate kinase fami 99.0 1.5E-08 3.2E-13 92.7 16.7 169 132-319 42-227 (234)
159 PRK13540 cytochrome c biogenes 99.0 4.5E-11 9.8E-16 106.5 0.2 73 116-189 10-85 (200)
160 PRK13644 cbiO cobalt transport 99.0 4.9E-11 1.1E-15 111.5 0.1 66 122-188 17-87 (274)
161 TIGR01359 UMP_CMP_kin_fam UMP- 99.0 2.3E-08 4.9E-13 87.5 17.0 90 224-314 76-182 (183)
162 TIGR02769 nickel_nikE nickel i 99.0 9.8E-11 2.1E-15 108.9 2.0 67 120-187 24-97 (265)
163 PRK13643 cbiO cobalt transport 99.0 6.1E-11 1.3E-15 111.7 0.7 65 122-187 21-93 (288)
164 PRK13650 cbiO cobalt transport 99.0 2E-09 4.3E-14 101.0 10.4 65 122-187 22-90 (279)
165 PRK14259 phosphate ABC transpo 99.0 6E-09 1.3E-13 97.2 13.6 77 114-191 20-107 (269)
166 PRK10619 histidine/lysine/argi 99.0 9.2E-10 2E-14 101.9 8.0 49 114-162 12-60 (257)
167 PRK11231 fecE iron-dicitrate t 99.0 7.3E-11 1.6E-15 109.1 0.6 75 115-190 10-88 (255)
168 PRK13541 cytochrome c biogenes 99.0 7.9E-11 1.7E-15 104.5 0.7 48 117-166 11-58 (195)
169 TIGR01277 thiQ thiamine ABC tr 99.0 2.5E-09 5.4E-14 96.1 10.5 66 125-191 16-83 (213)
170 PRK13651 cobalt transporter AT 99.0 1.4E-09 3.1E-14 103.2 9.4 42 122-163 22-63 (305)
171 PRK13646 cbiO cobalt transport 99.0 2.3E-09 5E-14 100.9 10.6 65 122-187 22-94 (286)
172 PRK10575 iron-hydroxamate tran 99.0 3.4E-09 7.4E-14 98.6 11.6 77 113-190 17-97 (265)
173 cd03231 ABC_CcmA_heme_exporter 99.0 9.1E-11 2E-15 104.6 0.8 72 117-189 10-84 (201)
174 PRK13641 cbiO cobalt transport 99.0 1.9E-09 4E-14 101.6 9.7 65 122-187 22-94 (287)
175 PRK14247 phosphate ABC transpo 99.0 1.8E-10 3.9E-15 106.0 2.7 85 115-204 11-104 (250)
176 PRK13633 cobalt transporter AT 99.0 1.2E-10 2.6E-15 109.2 1.6 67 121-188 24-95 (280)
177 PRK09700 D-allose transporter 99.0 6.5E-11 1.4E-15 120.1 -0.4 78 113-191 11-93 (510)
178 TIGR02770 nickel_nikD nickel i 99.0 6E-11 1.3E-15 108.0 -0.6 61 127-188 6-72 (230)
179 PRK13638 cbiO cobalt transport 99.0 2.5E-09 5.5E-14 99.7 10.3 68 120-188 14-87 (271)
180 PRK13648 cbiO cobalt transport 99.0 8.8E-11 1.9E-15 109.5 0.5 66 122-188 24-93 (269)
181 PRK13652 cbiO cobalt transport 99.0 3.7E-09 8E-14 99.0 11.4 65 122-187 19-87 (277)
182 PRK14268 phosphate ABC transpo 99.0 1.1E-10 2.3E-15 108.2 0.9 76 115-191 20-106 (258)
183 PRK13649 cbiO cobalt transport 99.0 1.2E-10 2.5E-15 109.2 1.2 65 122-187 22-94 (280)
184 PRK13549 xylose transporter AT 99.0 8.7E-11 1.9E-15 119.0 0.3 163 113-280 11-188 (506)
185 TIGR01978 sufC FeS assembly AT 99.0 5.4E-11 1.2E-15 108.9 -1.1 76 115-191 8-90 (243)
186 cd03229 ABC_Class3 This class 99.0 8.9E-11 1.9E-15 102.7 0.1 43 120-162 13-55 (178)
187 PRK14532 adenylate kinase; Pro 99.0 1.2E-08 2.6E-13 89.8 13.6 92 223-315 77-186 (188)
188 PRK11308 dppF dipeptide transp 99.0 1.1E-08 2.5E-13 98.0 14.5 66 121-187 29-101 (327)
189 PRK04040 adenylate kinase; Pro 99.0 3.2E-08 6.9E-13 87.5 16.2 74 240-314 107-187 (188)
190 PRK11174 cysteine/glutathione 99.0 3.3E-09 7.2E-14 109.4 11.4 176 121-333 364-544 (588)
191 PRK13636 cbiO cobalt transport 99.0 2.9E-09 6.4E-14 100.0 10.1 66 121-187 20-91 (283)
192 COG0444 DppD ABC-type dipeptid 99.0 7E-09 1.5E-13 97.1 12.4 183 122-340 20-221 (316)
193 PRK10982 galactose/methyl gala 99.0 8.9E-11 1.9E-15 118.5 -0.3 76 115-191 6-86 (491)
194 PRK13632 cbiO cobalt transport 99.0 5.1E-09 1.1E-13 97.7 11.6 67 121-188 23-93 (271)
195 COG1134 TagH ABC-type polysacc 99.0 3.7E-09 8.1E-14 95.3 10.1 87 123-222 43-129 (249)
196 PRK13642 cbiO cobalt transport 99.0 1.4E-10 3.1E-15 108.5 1.1 66 122-188 22-91 (277)
197 cd03230 ABC_DR_subfamily_A Thi 99.0 1.2E-10 2.7E-15 101.3 0.5 41 122-162 15-55 (173)
198 PRK11022 dppD dipeptide transp 99.0 5.9E-09 1.3E-13 99.9 12.1 39 121-159 21-59 (326)
199 PRK13640 cbiO cobalt transport 99.0 4.1E-09 8.8E-14 99.0 10.8 66 122-188 22-94 (282)
200 PRK14242 phosphate transporter 99.0 3.7E-09 8.1E-14 97.5 10.4 76 114-190 13-99 (253)
201 cd03237 ABC_RNaseL_inhibitor_d 99.0 4.2E-09 9.1E-14 97.0 10.6 35 128-162 20-54 (246)
202 PRK15112 antimicrobial peptide 99.0 1.6E-10 3.4E-15 107.7 1.1 67 121-188 27-97 (267)
203 PRK14273 phosphate ABC transpo 99.0 1E-08 2.2E-13 94.6 13.2 75 115-190 15-100 (254)
204 PRK14267 phosphate ABC transpo 99.0 1.9E-10 4.1E-15 106.1 1.6 76 115-191 12-98 (253)
205 PRK10771 thiQ thiamine transpo 99.0 5.7E-09 1.2E-13 95.0 11.2 65 126-191 18-84 (232)
206 PRK14253 phosphate ABC transpo 99.0 6E-09 1.3E-13 95.9 11.4 77 114-191 10-96 (249)
207 PRK09544 znuC high-affinity zi 98.9 2.7E-10 5.9E-15 105.2 2.4 67 115-189 12-78 (251)
208 TIGR01184 ntrCD nitrate transp 98.9 4.1E-09 8.9E-14 96.0 10.0 62 128-191 6-67 (230)
209 cd03233 ABC_PDR_domain1 The pl 98.9 1.4E-10 3.1E-15 103.5 0.4 70 120-190 20-95 (202)
210 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.9 1.8E-10 3.8E-15 104.6 0.9 52 111-162 26-77 (224)
211 PRK09984 phosphonate/organopho 98.9 2.2E-10 4.7E-15 106.4 1.4 75 116-191 13-99 (262)
212 PRK11701 phnK phosphonate C-P 98.9 8.1E-11 1.8E-15 109.0 -1.6 50 116-166 15-64 (258)
213 PRK09473 oppD oligopeptide tra 98.9 5.7E-09 1.2E-13 100.2 11.1 67 120-187 29-106 (330)
214 PRK11288 araG L-arabinose tran 98.9 1.7E-10 3.6E-15 116.9 0.5 77 114-191 11-92 (501)
215 PRK14246 phosphate ABC transpo 98.9 7.4E-11 1.6E-15 109.3 -1.9 50 113-162 16-65 (257)
216 cd03299 ABC_ModC_like Archeal 98.9 8.5E-09 1.8E-13 94.2 11.7 69 122-191 14-84 (235)
217 TIGR02857 CydD thiol reductant 98.9 5.2E-09 1.1E-13 106.6 11.3 178 122-334 337-518 (529)
218 TIGR02324 CP_lyasePhnL phospho 98.9 3.6E-10 7.8E-15 102.3 2.4 70 121-191 22-103 (224)
219 PRK10744 pstB phosphate transp 98.9 1.8E-08 4E-13 93.4 13.7 76 115-191 21-107 (260)
220 TIGR03269 met_CoM_red_A2 methy 98.9 4.5E-09 9.8E-14 106.9 10.5 48 115-162 8-57 (520)
221 PRK10790 putative multidrug tr 98.9 5.5E-09 1.2E-13 107.9 11.2 175 122-333 356-535 (592)
222 PRK14263 phosphate ABC transpo 98.9 1.6E-08 3.6E-13 93.8 13.3 75 115-190 16-101 (261)
223 cd03251 ABCC_MsbA MsbA is an e 98.9 2.6E-10 5.6E-15 103.9 1.1 68 122-190 17-88 (234)
224 TIGR03771 anch_rpt_ABC anchore 98.9 3.9E-10 8.4E-15 102.3 2.2 58 130-189 3-60 (223)
225 PRK02496 adk adenylate kinase; 98.9 8.3E-08 1.8E-12 84.2 17.0 91 224-314 79-182 (184)
226 PRK14251 phosphate ABC transpo 98.9 3.1E-10 6.6E-15 104.6 1.5 75 115-190 12-97 (251)
227 PRK14241 phosphate transporter 98.9 1.4E-08 3E-13 94.0 12.5 76 115-191 12-98 (258)
228 cd03234 ABCG_White The White s 98.9 4.8E-09 1E-13 95.1 9.2 70 122-192 22-95 (226)
229 TIGR03873 F420-0_ABC_ATP propo 98.9 2.9E-10 6.2E-15 105.2 1.2 72 116-188 10-85 (256)
230 cd03215 ABC_Carb_Monos_II This 98.9 2.9E-10 6.2E-15 99.8 1.0 41 122-162 15-55 (182)
231 PRK13645 cbiO cobalt transport 98.9 9.5E-09 2.1E-13 96.8 11.4 65 122-187 26-99 (289)
232 PRK13657 cyclic beta-1,2-gluca 98.9 1E-08 2.2E-13 105.8 12.5 176 122-333 350-530 (588)
233 TIGR01257 rim_protein retinal- 98.9 3.2E-09 6.9E-14 120.8 9.4 95 115-214 1945-2044(2272)
234 PRK11176 lipid transporter ATP 98.9 5.4E-09 1.2E-13 107.7 10.3 178 122-334 358-540 (582)
235 PRK13631 cbiO cobalt transport 98.9 7.2E-09 1.6E-13 99.1 10.3 44 122-166 41-84 (320)
236 PRK13639 cbiO cobalt transport 98.9 9.8E-09 2.1E-13 96.1 10.9 66 121-187 16-87 (275)
237 COG4619 ABC-type uncharacteriz 98.9 4.2E-09 9.1E-14 89.9 7.4 52 111-162 7-58 (223)
238 PRK14272 phosphate ABC transpo 98.9 9.5E-09 2.1E-13 94.7 10.5 76 115-191 12-98 (252)
239 PRK11160 cysteine/glutathione 98.9 6.7E-09 1.4E-13 106.9 10.5 176 122-334 355-535 (574)
240 PRK14240 phosphate transporter 98.9 2.5E-08 5.4E-13 91.8 13.2 74 117-191 13-97 (250)
241 PRK14235 phosphate transporter 98.9 2.4E-08 5.2E-13 93.0 13.3 76 114-190 26-112 (267)
242 PRK14269 phosphate ABC transpo 98.9 1E-08 2.2E-13 94.2 10.6 77 114-191 9-92 (246)
243 PRK14270 phosphate ABC transpo 98.9 2.2E-08 4.7E-13 92.3 12.7 75 116-191 13-98 (251)
244 PRK11819 putative ABC transpor 98.9 2E-10 4.4E-15 117.7 -0.9 70 113-190 12-82 (556)
245 cd03252 ABCC_Hemolysin The ABC 98.9 3.1E-10 6.6E-15 103.7 0.4 68 122-190 17-88 (237)
246 PRK10261 glutathione transport 98.9 9.3E-09 2E-13 106.8 11.4 42 121-162 30-71 (623)
247 PRK14256 phosphate ABC transpo 98.9 2.4E-08 5.2E-13 92.1 12.9 76 115-191 12-98 (252)
248 TIGR03375 type_I_sec_LssB type 98.9 8.6E-09 1.9E-13 108.4 11.2 178 122-334 480-661 (694)
249 PRK10261 glutathione transport 98.9 1.1E-08 2.3E-13 106.4 11.7 65 122-187 339-410 (623)
250 TIGR03797 NHPM_micro_ABC2 NHPM 98.9 8E-09 1.7E-13 108.5 10.9 174 122-333 468-645 (686)
251 PRK10418 nikD nickel transport 98.9 4.5E-10 9.8E-15 103.8 1.3 66 122-188 18-89 (254)
252 TIGR02323 CP_lyasePhnK phospho 98.9 5.7E-10 1.2E-14 102.9 1.9 50 116-166 12-61 (253)
253 COG1129 MglA ABC-type sugar tr 98.9 1.2E-08 2.5E-13 101.5 11.2 89 110-203 11-104 (500)
254 cd03250 ABCC_MRP_domain1 Domai 98.9 3.5E-08 7.7E-13 88.0 13.3 60 121-190 19-78 (204)
255 TIGR01187 potA spermidine/putr 98.9 1.8E-10 3.9E-15 110.3 -1.7 139 138-281 1-146 (325)
256 TIGR03269 met_CoM_red_A2 methy 98.9 5.3E-10 1.1E-14 113.7 1.5 67 124-191 301-378 (520)
257 PRK14254 phosphate ABC transpo 98.9 3.3E-08 7.1E-13 93.0 13.4 75 115-190 47-132 (285)
258 TIGR02633 xylG D-xylose ABC tr 98.9 7.9E-10 1.7E-14 111.9 2.6 76 115-191 9-91 (500)
259 TIGR01257 rim_protein retinal- 98.9 5.5E-09 1.2E-13 119.0 9.5 184 113-340 934-1127(2272)
260 PTZ00088 adenylate kinase 1; P 98.9 4.3E-08 9.3E-13 89.3 13.5 51 262-312 169-227 (229)
261 PRK13547 hmuV hemin importer A 98.9 1.8E-08 3.9E-13 94.2 11.3 45 116-160 10-54 (272)
262 KOG0708 Membrane-associated gu 98.9 2.9E-08 6.2E-13 94.0 12.6 168 130-319 184-351 (359)
263 COG0563 Adk Adenylate kinase a 98.9 2.2E-08 4.9E-13 87.6 11.1 160 135-314 2-177 (178)
264 PRK14249 phosphate ABC transpo 98.9 3.7E-08 8E-13 90.8 13.2 74 116-190 13-97 (251)
265 PRK15177 Vi polysaccharide exp 98.9 1.3E-08 2.9E-13 91.6 10.0 41 123-163 3-43 (213)
266 COG1123 ATPase components of v 98.9 1.5E-08 3.2E-13 101.4 11.1 176 122-340 306-497 (539)
267 KOG0057 Mitochondrial Fe/S clu 98.9 5.7E-09 1.2E-13 103.2 8.0 177 122-334 367-547 (591)
268 PRK14262 phosphate ABC transpo 98.9 3.4E-08 7.4E-13 90.9 12.8 74 117-191 13-97 (250)
269 PRK14243 phosphate transporter 98.9 4E-08 8.7E-13 91.3 13.3 76 114-190 17-103 (264)
270 PRK10419 nikE nickel transport 98.8 5.4E-10 1.2E-14 104.1 0.5 67 120-187 25-98 (268)
271 TIGR03796 NHPM_micro_ABC1 NHPM 98.8 1.6E-08 3.5E-13 106.7 11.7 136 122-287 494-633 (710)
272 PRK14265 phosphate ABC transpo 98.8 4.8E-08 1E-12 91.4 13.6 76 114-190 27-113 (274)
273 PRK15134 microcin C ABC transp 98.8 7.9E-10 1.7E-14 112.7 1.6 65 121-187 300-371 (529)
274 cd03254 ABCC_Glucan_exporter_l 98.8 4.6E-08 9.9E-13 88.7 13.0 69 122-191 18-90 (229)
275 PLN03211 ABC transporter G-25; 98.8 8.9E-09 1.9E-13 107.4 9.4 90 112-206 73-164 (659)
276 COG3845 ABC-type uncharacteriz 98.8 1.7E-08 3.6E-13 99.0 10.6 90 112-206 9-103 (501)
277 PRK15093 antimicrobial peptide 98.8 3.8E-08 8.2E-13 94.5 13.0 68 120-188 20-99 (330)
278 PRK14248 phosphate ABC transpo 98.8 2.6E-08 5.7E-13 92.7 11.5 75 115-190 29-114 (268)
279 PRK14238 phosphate transporter 98.8 3.8E-08 8.3E-13 91.9 12.6 74 116-190 33-117 (271)
280 KOG0058 Peptide exporter, ABC 98.8 1.4E-08 3E-13 103.5 10.2 133 125-287 486-622 (716)
281 PRK14257 phosphate ABC transpo 98.8 3.8E-08 8.3E-13 94.4 12.8 182 121-338 96-289 (329)
282 PRK14237 phosphate transporter 98.8 3.7E-08 8.1E-13 91.7 12.4 76 114-190 27-113 (267)
283 COG4988 CydD ABC-type transpor 98.8 1E-08 2.2E-13 102.5 9.0 173 123-331 337-513 (559)
284 cd00227 CPT Chloramphenicol (C 98.8 6.6E-08 1.4E-12 84.3 13.2 161 132-312 1-172 (175)
285 PRK14274 phosphate ABC transpo 98.8 4.5E-08 9.8E-13 90.6 12.7 76 114-190 19-105 (259)
286 PRK14258 phosphate ABC transpo 98.8 7.9E-10 1.7E-14 102.6 0.9 46 115-160 15-60 (261)
287 PRK09700 D-allose transporter 98.8 5.2E-10 1.1E-14 113.5 -0.4 58 128-186 284-346 (510)
288 COG2274 SunT ABC-type bacterio 98.8 3.3E-09 7.1E-14 110.7 5.4 134 123-287 489-627 (709)
289 COG4133 CcmA ABC-type transpor 98.8 8.5E-10 1.8E-14 95.6 0.9 57 112-169 7-63 (209)
290 PRK14239 phosphate transporter 98.8 6.9E-08 1.5E-12 88.9 13.7 75 116-191 14-99 (252)
291 PRK14244 phosphate ABC transpo 98.8 9.5E-10 2.1E-14 101.4 1.3 75 116-191 14-99 (251)
292 COG1132 MdlB ABC-type multidru 98.8 1.2E-08 2.6E-13 104.9 9.5 177 121-332 343-523 (567)
293 cd03245 ABCC_bacteriocin_expor 98.8 3.7E-08 8.1E-13 88.8 11.6 68 122-190 19-90 (220)
294 TIGR01193 bacteriocin_ABC ABC- 98.8 2.1E-08 4.5E-13 105.8 11.4 177 122-333 489-669 (708)
295 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.8 1.1E-09 2.4E-14 100.0 1.5 68 122-190 18-89 (238)
296 cd03232 ABC_PDR_domain2 The pl 98.8 5E-10 1.1E-14 99.2 -0.9 42 121-162 21-64 (192)
297 PRK14275 phosphate ABC transpo 98.8 4.4E-08 9.5E-13 92.2 12.1 76 114-190 46-132 (286)
298 TIGR02203 MsbA_lipidA lipid A 98.8 1.8E-08 3.9E-13 103.5 10.3 179 122-334 347-529 (571)
299 cd03213 ABCG_EPDR ABCG transpo 98.8 4E-10 8.7E-15 100.0 -1.7 44 122-166 24-69 (194)
300 PRK14260 phosphate ABC transpo 98.8 4.4E-08 9.6E-13 90.7 11.9 76 115-191 15-101 (259)
301 cd03369 ABCC_NFT1 Domain 2 of 98.8 5.1E-10 1.1E-14 100.1 -1.1 68 122-190 23-94 (207)
302 cd03248 ABCC_TAP TAP, the Tran 98.8 7.5E-10 1.6E-14 100.4 -0.0 180 122-336 29-212 (226)
303 PRK14271 phosphate ABC transpo 98.8 7.2E-08 1.6E-12 90.3 13.3 78 113-191 27-114 (276)
304 PRK14236 phosphate transporter 98.8 6.7E-08 1.4E-12 90.3 13.0 77 114-191 32-119 (272)
305 cd03216 ABC_Carb_Monos_I This 98.8 1.2E-09 2.6E-14 94.3 1.1 46 117-162 10-55 (163)
306 PRK14245 phosphate ABC transpo 98.8 5.2E-08 1.1E-12 89.7 12.1 74 116-190 12-96 (250)
307 PRK10762 D-ribose transporter 98.8 1.2E-09 2.5E-14 110.7 1.1 59 128-187 273-336 (501)
308 TIGR02633 xylG D-xylose ABC tr 98.8 6.4E-10 1.4E-14 112.6 -0.9 64 123-187 276-345 (500)
309 PRK11288 araG L-arabinose tran 98.8 1.1E-09 2.3E-14 111.0 0.8 59 128-187 274-337 (501)
310 cd03244 ABCC_MRP_domain2 Domai 98.8 5.1E-08 1.1E-12 88.0 11.6 68 122-190 19-90 (221)
311 PRK03695 vitamin B12-transport 98.8 3.8E-08 8.3E-13 90.6 11.0 65 123-189 12-80 (248)
312 TIGR00958 3a01208 Conjugate Tr 98.8 1.6E-08 3.4E-13 106.7 9.5 136 122-287 496-635 (711)
313 PRK14255 phosphate ABC transpo 98.8 7.9E-08 1.7E-12 88.6 12.9 75 115-190 13-98 (252)
314 cd03246 ABCC_Protease_Secretio 98.8 7.5E-10 1.6E-14 96.4 -0.7 41 122-162 17-57 (173)
315 PRK13409 putative ATPase RIL; 98.8 9.7E-10 2.1E-14 113.1 -0.2 53 126-188 358-410 (590)
316 cd03214 ABC_Iron-Siderophores_ 98.8 5.4E-10 1.2E-14 97.9 -1.9 46 117-162 9-54 (180)
317 PRK14731 coaE dephospho-CoA ki 98.8 1.1E-08 2.3E-13 91.9 6.5 68 248-318 136-204 (208)
318 cd03253 ABCC_ATM1_transporter 98.8 1.1E-07 2.3E-12 86.7 13.1 68 122-190 16-87 (236)
319 CHL00131 ycf16 sulfate ABC tra 98.8 2.2E-09 4.9E-14 98.8 1.9 48 115-162 15-64 (252)
320 cd03222 ABC_RNaseL_inhibitor T 98.8 2.9E-08 6.2E-13 86.9 8.7 49 115-165 8-56 (177)
321 PRK15134 microcin C ABC transp 98.8 1.7E-09 3.7E-14 110.3 1.1 39 121-159 23-61 (529)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 98.8 1.8E-09 3.9E-14 110.7 1.2 63 117-187 332-394 (552)
323 TIGR01192 chvA glucan exporter 98.8 3.6E-08 7.9E-13 101.7 10.8 176 123-334 351-531 (585)
324 COG4586 ABC-type uncharacteriz 98.8 5E-10 1.1E-14 102.2 -2.6 170 125-306 42-220 (325)
325 PRK13549 xylose transporter AT 98.8 1.1E-09 2.5E-14 110.9 -0.3 65 122-187 277-347 (506)
326 TIGR02204 MsbA_rel ABC transpo 98.8 2.4E-08 5.3E-13 102.7 9.5 178 122-334 355-536 (576)
327 PRK13546 teichoic acids export 98.8 5.4E-08 1.2E-12 90.6 10.9 42 121-162 38-79 (264)
328 PRK14261 phosphate ABC transpo 98.8 1E-07 2.2E-12 88.0 12.6 75 115-190 14-99 (253)
329 cd03290 ABCC_SUR1_N The SUR do 98.8 1.6E-07 3.6E-12 84.5 13.7 68 122-190 16-91 (218)
330 PRK11819 putative ABC transpor 98.8 2.2E-09 4.8E-14 110.0 1.5 65 115-187 332-396 (556)
331 cd03217 ABC_FeS_Assembly ABC-t 98.8 1.3E-09 2.8E-14 97.2 -0.2 73 117-190 10-89 (200)
332 TIGR01846 type_I_sec_HlyB type 98.8 4.1E-08 8.9E-13 103.3 11.0 178 122-334 472-653 (694)
333 PRK14252 phosphate ABC transpo 98.8 1.3E-07 2.9E-12 87.9 13.2 45 115-159 24-68 (265)
334 PRK15056 manganese/iron transp 98.8 1.5E-09 3.3E-14 101.3 0.2 67 120-187 20-87 (272)
335 cd03247 ABCC_cytochrome_bd The 98.8 5.2E-10 1.1E-14 97.8 -2.9 41 122-162 17-57 (178)
336 cd03223 ABCD_peroxisomal_ALDP 98.7 1.1E-07 2.3E-12 82.3 11.5 59 121-187 15-73 (166)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 98.7 1.2E-09 2.5E-14 112.0 -1.1 69 114-190 11-80 (552)
338 PRK10789 putative multidrug tr 98.7 4.3E-08 9.3E-13 100.9 10.5 177 122-333 330-510 (569)
339 COG1119 ModF ABC-type molybden 98.7 9.6E-10 2.1E-14 99.1 -1.5 50 113-162 37-86 (257)
340 PRK13409 putative ATPase RIL; 98.7 4.6E-08 1E-12 100.8 10.6 73 89-162 45-128 (590)
341 PRK15064 ABC transporter ATP-b 98.7 1.6E-09 3.5E-14 110.4 -0.2 65 115-187 327-391 (530)
342 COG4161 ArtP ABC-type arginine 98.7 3E-08 6.5E-13 84.1 7.3 166 114-320 9-190 (242)
343 cd03228 ABCC_MRP_Like The MRP 98.7 5.9E-08 1.3E-12 84.2 9.3 41 122-162 17-57 (171)
344 COG4618 ArpD ABC-type protease 98.7 6.2E-08 1.3E-12 95.3 9.9 173 122-331 351-530 (580)
345 PRK00698 tmk thymidylate kinas 98.7 3.8E-07 8.2E-12 81.0 14.3 173 132-317 2-203 (205)
346 PTZ00265 multidrug resistance 98.7 4.9E-08 1.1E-12 109.8 10.5 38 122-159 1183-1220(1466)
347 PRK14264 phosphate ABC transpo 98.7 1.5E-07 3.4E-12 89.3 12.2 73 117-190 55-138 (305)
348 PRK10938 putative molybdenum t 98.7 6.7E-08 1.4E-12 97.6 10.3 48 115-162 11-58 (490)
349 PRK09580 sufC cysteine desulfu 98.7 7E-09 1.5E-13 95.2 2.8 75 116-191 10-91 (248)
350 KOG0055 Multidrug/pheromone ex 98.7 8.2E-08 1.8E-12 103.3 11.0 132 126-287 1009-1144(1228)
351 PRK10535 macrolide transporter 98.7 8.4E-08 1.8E-12 100.2 10.9 70 121-191 22-99 (648)
352 PRK11147 ABC transporter ATPas 98.7 4.2E-09 9E-14 109.7 1.2 67 113-187 325-391 (635)
353 TIGR01842 type_I_sec_PrtD type 98.7 9.2E-08 2E-12 97.9 11.0 179 122-334 333-515 (544)
354 COG4608 AppF ABC-type oligopep 98.7 1.3E-07 2.7E-12 86.9 10.6 43 123-166 29-71 (268)
355 PRK10982 galactose/methyl gala 98.7 4.7E-09 1E-13 106.0 1.3 171 128-307 269-455 (491)
356 PRK13545 tagH teichoic acids e 98.7 1E-07 2.2E-12 95.8 10.8 43 122-165 39-81 (549)
357 COG1123 ATPase components of v 98.7 7.8E-08 1.7E-12 96.3 9.7 182 121-340 23-222 (539)
358 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.7 2.5E-07 5.3E-12 78.2 11.4 41 122-162 15-55 (144)
359 PRK14266 phosphate ABC transpo 98.7 2.5E-07 5.4E-12 85.2 12.3 74 117-191 13-97 (250)
360 PRK10938 putative molybdenum t 98.7 2.5E-09 5.4E-14 108.0 -1.1 74 114-188 267-346 (490)
361 PRK15439 autoinducer 2 ABC tra 98.7 3.7E-09 8.1E-14 107.3 -0.0 59 128-187 284-347 (510)
362 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 1.1E-07 2.4E-12 79.8 8.9 72 81-158 31-108 (141)
363 cd03289 ABCC_CFTR2 The CFTR su 98.7 2.1E-07 4.7E-12 87.1 11.5 68 122-191 19-90 (275)
364 COG4107 PhnK ABC-type phosphon 98.7 1.8E-07 4E-12 80.4 9.9 57 110-167 9-65 (258)
365 PRK15064 ABC transporter ATP-b 98.6 6.6E-09 1.4E-13 106.0 1.0 48 115-162 9-56 (530)
366 cd03236 ABC_RNaseL_inhibitor_d 98.6 2.9E-09 6.4E-14 98.6 -1.5 35 129-163 22-56 (255)
367 COG4136 ABC-type uncharacteriz 98.6 3E-09 6.4E-14 89.2 -1.4 76 118-193 13-92 (213)
368 PLN03130 ABC transporter C fam 98.6 1.1E-07 2.4E-12 107.9 10.8 174 122-331 1254-1431(1622)
369 PLN03232 ABC transporter C fam 98.6 7.2E-08 1.6E-12 109.0 9.1 176 121-332 1250-1429(1495)
370 KOG0055 Multidrug/pheromone ex 98.6 7E-08 1.5E-12 103.8 8.4 130 125-287 371-507 (1228)
371 cd01672 TMPK Thymidine monopho 98.6 1.1E-06 2.4E-11 77.2 14.9 170 134-315 1-199 (200)
372 cd01428 ADK Adenylate kinase ( 98.6 1E-06 2.2E-11 77.6 14.2 81 224-305 77-193 (194)
373 PRK10636 putative ABC transpor 98.6 8.1E-09 1.8E-13 107.5 0.4 50 113-162 7-56 (638)
374 PLN02842 nucleotide kinase 98.6 7.8E-07 1.7E-11 89.0 14.3 52 265-318 149-204 (505)
375 PRK13974 thymidylate kinase; P 98.6 1.7E-06 3.7E-11 77.8 15.4 173 132-318 2-208 (212)
376 cd03288 ABCC_SUR2 The SUR doma 98.6 7.1E-09 1.5E-13 96.0 -0.2 68 122-190 36-107 (257)
377 COG4598 HisP ABC-type histidin 98.6 4.6E-07 1E-11 78.3 10.8 185 110-332 9-211 (256)
378 PRK10636 putative ABC transpor 98.6 1.5E-08 3.2E-13 105.6 1.6 65 114-186 319-383 (638)
379 COG0396 sufC Cysteine desulfur 98.6 1.5E-07 3.3E-12 84.2 7.7 71 121-192 18-95 (251)
380 PTZ00243 ABC transporter; Prov 98.6 2.5E-07 5.4E-12 104.9 10.8 177 121-333 1324-1505(1560)
381 KOG0059 Lipid exporter ABCA1 a 98.6 1.2E-07 2.5E-12 102.2 7.6 90 128-221 586-679 (885)
382 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.7E-07 3.6E-12 80.2 7.0 92 79-174 26-142 (157)
383 KOG0061 Transporter, ABC super 98.6 4.9E-07 1.1E-11 93.6 11.7 87 118-209 41-131 (613)
384 TIGR00955 3a01204 The Eye Pigm 98.6 3.1E-07 6.7E-12 95.4 10.3 86 119-209 37-126 (617)
385 PLN03073 ABC transporter F fam 98.6 1.9E-08 4E-13 105.8 1.2 59 121-187 523-581 (718)
386 TIGR00956 3a01205 Pleiotropic 98.6 2.1E-07 4.5E-12 104.5 9.6 83 120-207 776-861 (1394)
387 PRK06762 hypothetical protein; 98.6 2.7E-06 5.9E-11 73.1 14.6 25 133-157 2-26 (166)
388 PRK10522 multidrug transporter 98.5 8E-07 1.7E-11 91.1 12.8 71 122-193 338-412 (547)
389 cd01849 YlqF_related_GTPase Yl 98.5 4E-07 8.6E-12 77.7 8.9 86 90-176 24-142 (155)
390 COG1102 Cmk Cytidylate kinase 98.5 5.9E-06 1.3E-10 70.2 15.6 157 135-318 2-174 (179)
391 PLN03140 ABC transporter G fam 98.5 4.3E-08 9.3E-13 110.0 3.3 83 122-209 180-266 (1470)
392 PLN03130 ABC transporter C fam 98.5 1.7E-07 3.7E-12 106.5 8.1 168 122-333 632-800 (1622)
393 TIGR00957 MRP_assoc_pro multi 98.5 2.4E-07 5.3E-12 104.9 9.3 175 122-332 1301-1479(1522)
394 KOG0056 Heavy metal exporter H 98.5 4.3E-08 9.3E-13 95.9 2.7 131 124-287 555-692 (790)
395 PRK13973 thymidylate kinase; P 98.5 5.4E-06 1.2E-10 74.6 16.2 174 132-318 2-208 (213)
396 PRK01184 hypothetical protein; 98.5 8.3E-06 1.8E-10 71.4 16.7 95 224-319 80-181 (184)
397 COG0488 Uup ATPase components 98.5 2.1E-08 4.6E-13 101.4 -0.1 54 112-166 8-61 (530)
398 TIGR01194 cyc_pep_trnsptr cycl 98.5 3.1E-08 6.6E-13 101.7 0.9 70 122-192 357-430 (555)
399 PLN03232 ABC transporter C fam 98.5 2.3E-07 5E-12 105.0 7.9 127 122-287 632-758 (1495)
400 PTZ00265 multidrug resistance 98.5 6.1E-07 1.3E-11 101.1 11.0 78 122-205 400-482 (1466)
401 PRK14730 coaE dephospho-CoA ki 98.5 5.4E-07 1.2E-11 80.1 8.4 65 246-314 127-192 (195)
402 PRK00091 miaA tRNA delta(2)-is 98.5 8.7E-07 1.9E-11 84.1 10.2 120 132-266 3-130 (307)
403 COG4987 CydC ABC-type transpor 98.5 2.2E-08 4.7E-13 99.0 -0.7 135 123-287 354-492 (573)
404 TIGR00954 3a01203 Peroxysomal 98.5 9.4E-07 2E-11 92.5 11.4 62 121-190 466-527 (659)
405 PRK00081 coaE dephospho-CoA ki 98.5 7.6E-07 1.6E-11 79.0 9.2 66 247-316 127-193 (194)
406 PF00406 ADK: Adenylate kinase 98.5 3.7E-07 8.1E-12 77.5 6.6 59 223-284 73-138 (151)
407 cd03291 ABCC_CFTR1 The CFTR su 98.5 1.6E-06 3.4E-11 81.6 11.3 58 122-189 52-109 (282)
408 PHA02530 pseT polynucleotide k 98.5 5.3E-06 1.1E-10 78.3 15.1 25 133-157 2-26 (300)
409 TIGR01271 CFTR_protein cystic 98.5 9E-07 2E-11 100.2 11.4 176 120-332 1232-1411(1490)
410 PF13671 AAA_33: AAA domain; P 98.4 6.8E-07 1.5E-11 74.6 7.5 112 135-269 1-121 (143)
411 cd00267 ABC_ATPase ABC (ATP-bi 98.4 3.4E-06 7.4E-11 72.0 11.9 41 122-162 14-54 (157)
412 PRK09825 idnK D-gluconate kina 98.4 5.4E-06 1.2E-10 72.5 13.2 28 132-159 2-29 (176)
413 cd03238 ABC_UvrA The excision 98.4 4.9E-08 1.1E-12 85.4 0.2 30 126-155 14-43 (176)
414 COG4674 Uncharacterized ABC-ty 98.4 1.8E-07 4E-12 81.8 3.7 148 116-267 14-179 (249)
415 TIGR01271 CFTR_protein cystic 98.4 1.8E-06 3.8E-11 97.8 12.4 70 121-205 440-509 (1490)
416 COG4559 ABC-type hemin transpo 98.4 1.9E-06 4.1E-11 76.4 9.7 44 122-166 16-59 (259)
417 PLN03140 ABC transporter G fam 98.4 1.4E-06 3.1E-11 97.9 11.0 83 120-207 893-978 (1470)
418 PTZ00451 dephospho-CoA kinase; 98.4 1.5E-06 3.3E-11 79.8 9.2 77 246-326 138-217 (244)
419 PRK14733 coaE dephospho-CoA ki 98.4 2.1E-06 4.7E-11 76.7 9.6 69 247-319 131-201 (204)
420 TIGR00235 udk uridine kinase. 98.4 4.3E-06 9.3E-11 74.8 11.2 29 131-159 4-32 (207)
421 PTZ00243 ABC transporter; Prov 98.3 1.5E-06 3.3E-11 98.6 10.1 71 120-205 673-743 (1560)
422 TIGR00956 3a01205 Pleiotropic 98.3 2.9E-08 6.3E-13 111.3 -3.7 82 121-207 75-163 (1394)
423 PRK14732 coaE dephospho-CoA ki 98.3 8.6E-07 1.9E-11 78.9 6.2 69 246-318 123-192 (196)
424 PRK12339 2-phosphoglycerate ki 98.3 1.5E-06 3.2E-11 77.4 7.1 176 132-314 2-195 (197)
425 TIGR00957 MRP_assoc_pro multi 98.3 3.1E-06 6.7E-11 96.1 11.4 69 122-205 653-721 (1522)
426 PRK08233 hypothetical protein; 98.3 2.2E-05 4.8E-10 68.1 14.5 27 132-158 2-28 (182)
427 TIGR01313 therm_gnt_kin carboh 98.3 2.3E-05 5E-10 67.2 14.0 23 136-158 1-23 (163)
428 PRK05541 adenylylsulfate kinas 98.3 2.3E-06 5E-11 74.5 7.8 29 130-158 4-32 (176)
429 cd03278 ABC_SMC_barmotin Barmo 98.3 4.9E-08 1.1E-12 86.9 -2.9 31 129-160 19-49 (197)
430 PF00005 ABC_tran: ABC transpo 98.3 4.4E-07 9.6E-12 75.3 2.7 63 128-191 6-72 (137)
431 COG0488 Uup ATPase components 98.3 1.7E-07 3.6E-12 95.0 -0.1 51 112-162 326-377 (530)
432 PRK03839 putative kinase; Prov 98.3 2.2E-05 4.8E-10 68.5 13.3 101 224-334 65-169 (180)
433 COG1101 PhnK ABC-type uncharac 98.3 1.7E-07 3.6E-12 83.2 -0.3 39 126-164 25-63 (263)
434 PRK00131 aroK shikimate kinase 98.2 8.3E-05 1.8E-09 63.9 16.5 27 131-157 2-28 (175)
435 PRK14734 coaE dephospho-CoA ki 98.2 2.8E-06 6E-11 75.8 7.3 69 246-318 127-196 (200)
436 COG4778 PhnL ABC-type phosphon 98.2 3.5E-07 7.7E-12 78.4 1.4 42 126-167 30-72 (235)
437 COG4172 ABC-type uncharacteriz 98.2 4E-06 8.6E-11 80.8 8.3 48 117-166 297-344 (534)
438 cd04466 S1_YloQ_GTPase S1_YloQ 98.2 1.7E-06 3.7E-11 63.2 4.6 33 30-63 35-68 (68)
439 COG4167 SapF ABC-type antimicr 98.2 4.7E-07 1E-11 78.5 1.5 40 127-167 33-72 (267)
440 PRK13975 thymidylate kinase; P 98.2 0.00012 2.7E-09 64.4 17.0 26 133-158 2-27 (196)
441 TIGR03574 selen_PSTK L-seryl-t 98.2 2.9E-05 6.4E-10 71.5 13.1 158 135-315 1-168 (249)
442 TIGR02173 cyt_kin_arch cytidyl 98.2 5.8E-05 1.3E-09 64.8 14.1 87 223-314 73-170 (171)
443 PLN02422 dephospho-CoA kinase 98.2 6.8E-06 1.5E-10 74.8 8.3 69 246-318 127-196 (232)
444 PRK13946 shikimate kinase; Pro 98.2 0.00013 2.8E-09 64.1 16.1 26 132-157 9-34 (184)
445 COG5265 ATM1 ABC-type transpor 98.2 2.4E-06 5.1E-11 82.6 5.1 136 122-287 278-417 (497)
446 PRK04182 cytidylate kinase; Pr 98.2 7.7E-05 1.7E-09 64.5 14.3 92 223-318 73-175 (180)
447 COG4178 ABC-type uncharacteriz 98.1 2.9E-05 6.2E-10 79.2 13.1 123 122-287 408-533 (604)
448 PLN02924 thymidylate kinase 98.1 0.00012 2.5E-09 66.4 15.4 172 130-317 13-204 (220)
449 PRK11545 gntK gluconate kinase 98.1 8.8E-05 1.9E-09 63.9 13.7 68 243-315 88-159 (163)
450 TIGR00152 dephospho-CoA kinase 98.1 1.1E-05 2.4E-10 71.1 8.0 60 247-310 126-186 (188)
451 COG0125 Tmk Thymidylate kinase 98.1 0.00011 2.3E-09 65.9 14.3 173 132-317 2-204 (208)
452 cd01855 YqeH YqeH. YqeH is an 98.1 1.3E-05 2.9E-10 70.5 8.1 85 93-177 59-178 (190)
453 PRK05057 aroK shikimate kinase 98.1 0.00029 6.4E-09 61.2 16.4 26 132-157 3-28 (172)
454 PRK13947 shikimate kinase; Pro 98.1 8.5E-05 1.8E-09 64.0 12.7 24 135-158 3-26 (171)
455 PRK11147 ABC transporter ATPas 98.1 1.6E-06 3.6E-11 90.3 2.1 50 113-162 9-58 (635)
456 PRK08154 anaerobic benzoate ca 98.1 0.00026 5.5E-09 67.5 16.9 28 130-157 130-157 (309)
457 TIGR00041 DTMP_kinase thymidyl 98.0 0.00012 2.5E-09 64.6 13.5 27 132-158 2-28 (195)
458 PRK05480 uridine/cytidine kina 98.0 5.3E-05 1.1E-09 67.8 11.2 26 132-157 5-30 (209)
459 COG0237 CoaE Dephospho-CoA kin 98.0 2.2E-05 4.7E-10 70.0 8.3 67 249-318 127-194 (201)
460 PRK13976 thymidylate kinase; P 98.0 0.00018 3.9E-09 64.7 14.3 173 134-318 1-203 (209)
461 PRK13949 shikimate kinase; Pro 98.0 0.00013 2.8E-09 63.4 12.8 25 134-158 2-26 (169)
462 PRK07933 thymidylate kinase; V 98.0 0.00035 7.5E-09 63.0 16.0 34 134-168 1-34 (213)
463 PRK03846 adenylylsulfate kinas 98.0 5.5E-05 1.2E-09 67.2 10.7 28 131-158 22-49 (198)
464 COG1936 Predicted nucleotide k 98.0 8.7E-05 1.9E-09 63.9 11.3 84 224-316 67-156 (180)
465 PF07931 CPT: Chloramphenicol 98.0 6.5E-05 1.4E-09 65.5 10.6 158 133-312 1-171 (174)
466 COG0703 AroK Shikimate kinase 98.0 0.00017 3.7E-09 62.4 12.9 27 133-159 2-28 (172)
467 KOG0060 Long-chain acyl-CoA tr 98.0 7.9E-05 1.7E-09 74.8 11.9 43 126-168 454-496 (659)
468 PRK00889 adenylylsulfate kinas 98.0 5E-05 1.1E-09 65.9 9.5 28 131-158 2-29 (175)
469 PRK12338 hypothetical protein; 98.0 0.00014 3.1E-09 69.0 13.2 27 132-158 3-29 (319)
470 COG2019 AdkA Archaeal adenylat 97.9 0.00029 6.3E-09 60.3 13.1 157 134-315 5-187 (189)
471 PRK03731 aroL shikimate kinase 97.9 0.0004 8.7E-09 59.9 14.5 24 134-157 3-26 (171)
472 cd02022 DPCK Dephospho-coenzym 97.9 3.4E-05 7.4E-10 67.4 7.7 52 246-301 123-174 (179)
473 KOG3354 Gluconate kinase [Carb 97.9 0.00031 6.6E-09 59.5 12.6 25 134-158 13-37 (191)
474 PRK13948 shikimate kinase; Pro 97.9 0.00082 1.8E-08 59.1 16.1 26 132-157 9-34 (182)
475 PRK13796 GTPase YqeH; Provisio 97.9 3.1E-05 6.6E-10 75.5 7.8 94 95-189 96-220 (365)
476 cd01856 YlqF YlqF. Proteins o 97.9 5.1E-05 1.1E-09 65.8 8.2 64 94-157 45-139 (171)
477 KOG0065 Pleiotropic drug resis 97.9 4.9E-06 1.1E-10 90.2 2.0 154 122-280 806-975 (1391)
478 TIGR00455 apsK adenylylsulfate 97.9 7.1E-05 1.5E-09 65.6 9.1 29 130-158 15-43 (184)
479 KOG3220 Similar to bacterial d 97.9 0.00011 2.4E-09 64.6 10.0 62 255-319 135-197 (225)
480 COG4172 ABC-type uncharacteriz 97.9 9.6E-05 2.1E-09 71.5 10.0 165 121-321 24-207 (534)
481 cd01859 MJ1464 MJ1464. This f 97.9 8.1E-05 1.8E-09 63.3 8.8 66 92-157 38-125 (156)
482 cd02023 UMPK Uridine monophosp 97.9 0.00013 2.7E-09 64.7 10.3 23 135-157 1-23 (198)
483 cd03240 ABC_Rad50 The catalyti 97.8 1.7E-06 3.6E-11 77.5 -2.5 25 135-159 24-52 (204)
484 cd00464 SK Shikimate kinase (S 97.8 0.00026 5.7E-09 59.6 11.0 23 135-157 1-23 (154)
485 COG0529 CysC Adenylylsulfate k 97.8 0.00039 8.4E-09 60.2 11.7 29 130-158 20-48 (197)
486 KOG0062 ATPase component of AB 97.8 4.1E-06 8.8E-11 82.7 -0.7 41 115-155 88-128 (582)
487 PLN02199 shikimate kinase 97.8 0.0011 2.5E-08 62.2 15.4 27 131-157 100-126 (303)
488 PRK05537 bifunctional sulfate 97.8 0.00028 6E-09 72.6 12.4 29 131-159 390-418 (568)
489 KOG3078 Adenylate kinase [Nucl 97.7 0.00078 1.7E-08 61.1 13.4 55 262-317 167-225 (235)
490 cd00820 PEPCK_HprK Phosphoenol 97.7 2.6E-05 5.6E-10 62.4 3.5 27 128-154 10-36 (107)
491 PRK12337 2-phosphoglycerate ki 97.7 0.00035 7.6E-09 69.4 11.8 98 215-314 350-459 (475)
492 PF02223 Thymidylate_kin: Thym 97.7 0.00024 5.1E-09 62.3 9.5 92 216-310 72-186 (186)
493 COG4615 PvdE ABC-type sideroph 97.7 0.0005 1.1E-08 66.4 12.2 38 128-166 344-381 (546)
494 cd02021 GntK Gluconate kinase 97.7 0.00035 7.6E-09 58.8 10.0 23 135-157 1-23 (150)
495 PLN03073 ABC transporter F fam 97.7 2.1E-05 4.5E-10 83.0 2.6 45 112-156 182-226 (718)
496 cd04178 Nucleostemin_like Nucl 97.7 0.00021 4.7E-09 62.2 8.5 40 134-174 118-157 (172)
497 PRK00625 shikimate kinase; Pro 97.7 0.00099 2.1E-08 58.1 12.7 24 135-158 2-25 (173)
498 TIGR03597 GTPase_YqeH ribosome 97.7 0.00013 2.8E-09 71.0 7.9 94 95-188 90-213 (360)
499 KOG0054 Multidrug resistance-a 97.6 0.00016 3.4E-09 80.1 8.8 118 126-287 540-661 (1381)
500 TIGR03596 GTPase_YlqF ribosome 97.6 0.00015 3.3E-09 67.9 7.7 82 95-177 48-161 (276)
No 1
>PLN02772 guanylate kinase
Probab=100.00 E-value=1.4e-46 Score=359.17 Aligned_cols=315 Identities=78% Similarity=1.242 Sum_probs=285.8
Q ss_pred CCCCCceeeccccCCCCcccceeeeccCCCCCceeccEEEEEec-CC---eeEEEEEeeCCCceEEcccccCCCCCCCCC
Q 019061 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAG-SD---ESIGVKIYDRSTGNWLIPAVRGIEPRPCKG 76 (346)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~v~~~~~-~~---~~~i~~i~~R~~~~l~rp~van~~~~~~p~ 76 (346)
|||||||.||+|+| |+.|||-+|++.....+++||++.+--. ++ -...+.|+....+.|.+|.|-+--|.++-+
T Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G 78 (398)
T PLN02772 1 MGEAPAFFVDHLEN--GYTNGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG 78 (398)
T ss_pred CCCCCceeeechhh--ccccCccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc
Confidence 99999999999996 5789999999999999999999987542 22 235778999888999999999988888888
Q ss_pred CCccCccccchhhccccCCCCeeEEEeCCChHHHHHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 77 HSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 77 ~~~~~l~~dr~l~~~~~~~~~~~i~~~k~D~~~~~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.+...+.+||.||+........+|||-++|++.+++..+..|.+|+.++.......+++++|+||||||||||+++|...
T Consensus 79 hSa~v~~~~rilv~~~~~~~~~~~w~l~~~t~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 79 YSAVVLNKDRILVIKKGSAPDDSIWFLEVDTPFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred ceEEEECCceEEEEeCCCCCccceEEEEcCCHHHHhhcccccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhh
Confidence 89999999999999988889999999999998888888999999999986545557899999999999999999999998
Q ss_pred cCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHH
Q 019061 157 FPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGA 236 (346)
Q Consensus 157 ~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~ 236 (346)
++..++..++||||+++..+.+|.+|+|.+.+.|..++.++.|+|+.++.+++||++++.++..++.|+.++||+|++++
T Consensus 159 ~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGa 238 (398)
T PLN02772 159 FPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGA 238 (398)
T ss_pred ccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHH
Confidence 87778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHH
Q 019061 237 RSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 237 ~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
++++......++||+.+|+++++++||..|+..+++.+++|++.+..+++.......|+.+|.|+++++++++|.+++..
T Consensus 239 r~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~~fD~vIvNDdLe~A~~~L~~iL~~ 318 (398)
T PLN02772 239 RSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFDHILYNDNLEECYKNLKKLLGL 318 (398)
T ss_pred HHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCCCEEEECCCHHHHHHHHHHHHhh
Confidence 99998778889999999999999999999999999999999999987777544456799999999999999999998864
Q ss_pred h
Q 019061 317 L 317 (346)
Q Consensus 317 l 317 (346)
-
T Consensus 319 ~ 319 (398)
T PLN02772 319 D 319 (398)
T ss_pred c
Confidence 3
No 2
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.3e-34 Score=244.65 Aligned_cols=181 Identities=49% Similarity=0.740 Sum_probs=171.9
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
+|.+++|.||||+|||||+++|.... ....+|++|||.+|.++.+|++|+|.+.+.|..++..+.|+||.++.+++||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 68999999999999999999999887 5677999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Q 019061 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~ 291 (346)
++...++..+..|..++||.+++|+.+++...+..++||+.||+++.|++||.+|+.++.+.+.+||..++.+++++.
T Consensus 81 T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~-- 158 (191)
T COG0194 81 TSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHAD-- 158 (191)
T ss_pred CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998853
Q ss_pred CCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 292 GIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 292 ~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
.|+.++.|++++.++..+..++...
T Consensus 159 -~fdyvivNdd~e~a~~~l~~ii~ae 183 (191)
T COG0194 159 -EFDYVIVNDDLEKALEELKSIILAE 183 (191)
T ss_pred -hCCEEEECccHHHHHHHHHHHHHHH
Confidence 3899999999999999999887643
No 3
>COG1162 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=265.03 Aligned_cols=181 Identities=24% Similarity=0.275 Sum_probs=148.0
Q ss_pred eccCCCCCceeccEEEEEecCCeeEEEEEeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhccccCCCCe
Q 019061 25 KSRDCETTTVIGDKTYVIAGSDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDD 98 (346)
Q Consensus 25 ~~~~~~~~~~vGD~v~~~~~~~~~~i~~i~~R~~~~l~rp~van~~------~~~~p~~~~~~l~~dr~l~~~~~~~~~~ 98 (346)
+-|++...|+|||||.|+.....|+|++|+|| +|.|.||+|||+| ++.+|+||+.+| ||||++||..||+|
T Consensus 37 ~lr~~~~~~vVGD~V~~~~~~~~g~I~~i~~R-kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~l--dR~Lv~ae~~gi~p 113 (301)
T COG1162 37 NLRKKDLKPVVGDRVVFEDENNNGVIEKILPR-KNVLIRPPVANNDQAIIVVSLVDPDFNTNLL--DRYLVLAEAGGIEP 113 (301)
T ss_pred ceeccCccccccCeEEEecCCCcceEEEEecc-cCceeCCcccccceEEEEEeccCCCCCHHHH--HHHHHHHHHcCCcE
Confidence 34555788999999999976545999999999 8999999999988 999999999999 99999999999999
Q ss_pred eEEEeCCCh---HHHH-----HHHHHcCCeEEEeccCc--------cCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 99 CLWFLEVDT---PYVR-----EQKKVVGAEVVAWSKGV--------IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 99 ~i~~~k~D~---~~~~-----~~~~~~g~~v~~~~~~~--------~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+||+||+|+ +... .....+||+++.++... ..++|++++|+|+||+|||||+|.|.+.....+|
T Consensus 114 vIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~ 193 (301)
T COG1162 114 VIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPELNQKTG 193 (301)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHHHhhCchhhhhhh
Confidence 999999993 2211 23468999999998542 2468999999999999999999999998877777
Q ss_pred cee-------eecCCcccccccCCeeEE-----eeChhH--HHHHHhccchhhhhhhhccc
Q 019061 163 FSV-------SHTTRAPRAMEKDGVHYH-----FTERSV--MEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 163 ~~i-------~~ttr~~~~~~~~g~~y~-----f~s~~~--~~~~~~~~~~~e~~~~~~~~ 209 (346)
.| +|||++.+...+++.+++ |++.++ .........|.|+..+.+.|
T Consensus 194 -eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~C 253 (301)
T COG1162 194 -EISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQC 253 (301)
T ss_pred -hhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCC
Confidence 55 499999999988767777 444333 22334455788888777766
No 4
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.97 E-value=8.2e-30 Score=224.76 Aligned_cols=180 Identities=42% Similarity=0.665 Sum_probs=163.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
++++++|+||||||||||++.|....+. ....++||||+++.++.+|.+|+|.+.+.|..++..+.|+||..+.+++||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 5789999999999999999999988754 445789999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCe-EEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Q 019061 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDA-IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~-~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~ 290 (346)
++.+.++..+..|+.+++|++++++.+++...+.. ++||+.+|+.+.+.+|+..|+..+++.+++|++....+...
T Consensus 82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~--- 158 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDE--- 158 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---
Confidence 99999999999999999999999999999876665 78999999999999999999998999999999987655443
Q ss_pred CCCceEEEcCCCHHHHHHHHHHHHH
Q 019061 291 SGIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 291 ~~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
...+|.+|.|++++++..++.+++.
T Consensus 159 ~~~~D~vI~N~dle~a~~ql~~ii~ 183 (186)
T PRK14737 159 ANEFDYKIINDDLEDAIADLEAIIC 183 (186)
T ss_pred hccCCEEEECcCHHHHHHHHHHHHh
Confidence 4668999999999999999888774
No 5
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.96 E-value=6.3e-29 Score=218.68 Aligned_cols=182 Identities=46% Similarity=0.798 Sum_probs=166.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
++++++|+||||||||||+++|...++..++.+++||||+++.++.+|.+|+|.+.+.|..++..+.|+|+.++.++.||
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 47999999999999999999999998888888999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Q 019061 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~ 291 (346)
++.+.+...++.++.+++|++++++..++.....+.+||+.+|+.+.+.+|+..|+.++.+.+.+|+..+..+++.+..
T Consensus 81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~- 159 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNE- 159 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGG-
T ss_pred hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhc-
Confidence 9999999999999999999999999999999999999999999999999999999988888999999999887776533
Q ss_pred CCceEEEcCCCHHHHHHHHHHHHHH
Q 019061 292 GIFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 292 ~~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
|+.++.|+++++++++|.++|++
T Consensus 160 --fd~vi~n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 160 --FDYVIVNDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp --SSEEEECSSHHHHHHHHHHHHHH
T ss_pred --CCEEEECcCHHHHHHHHHHHHHh
Confidence 89999999999999999999875
No 6
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.96 E-value=4.4e-28 Score=213.54 Aligned_cols=181 Identities=52% Similarity=0.859 Sum_probs=168.3
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~ 212 (346)
+++++|+|||||||+|+++.|+...+..++..++||||+++.++.+|.+|+|.+.+.|..++..+.|+++..+.++.||+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 68999999999999999999999886668889999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Q 019061 213 SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (346)
Q Consensus 213 ~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~ 292 (346)
+.+.++..++.++.+++|++++++.+++.....+.+||+.+|+.+.+.+|+..|++++.+.+.+|+..+..+...+ +
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~---~ 158 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEY---H 158 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh---c
Confidence 9999999999999999999999999999888888999999999999999999999999999999999987766542 5
Q ss_pred CceEEEcCCCHHHHHHHHHHHHHH
Q 019061 293 IFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 293 ~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
.|+.++.|+++++++++|.++|.+
T Consensus 159 ~fd~~I~n~~l~~~~~~l~~~i~~ 182 (184)
T smart00072 159 LFDYVIVNDDLEDAYEELKEILEA 182 (184)
T ss_pred cCCEEEECcCHHHHHHHHHHHHHh
Confidence 689999999999999999998864
No 7
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=99.94 E-value=2e-25 Score=216.38 Aligned_cols=282 Identities=29% Similarity=0.466 Sum_probs=211.0
Q ss_pred eeEEEEEeeCCCceEEcccccCCCCCCCCC-CCccCccccchhhccccCC--C--CeeEEEeCCChH----HHHHHHHHc
Q 019061 47 ESIGVKIYDRSTGNWLIPAVRGIEPRPCKG-HSAVLLNEDRILVIKKGSS--S--DDCLWFLEVDTP----YVREQKKVV 117 (346)
Q Consensus 47 ~~~i~~i~~R~~~~l~rp~van~~~~~~p~-~~~~~l~~dr~l~~~~~~~--~--~~~i~~~k~D~~----~~~~~~~~~ 117 (346)
.|=|++|..+++.+||+...-+-.....-+ .++..+.|.|.+.+..... . ..|-.++|-+.. +..++...+
T Consensus 242 ~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~~~~~~c~~l~kkkk~~~~~y~~~~~~~~ 321 (542)
T KOG0609|consen 242 RGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKEPEKTRCQRLSKKKKKKKSKYLGKHSAVF 321 (542)
T ss_pred ccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccCCcCchhcccchhhhhhhhhhhhhcchhh
Confidence 789999999999999998765422011112 2344444556555533221 1 134445553311 111111111
Q ss_pred CCeEEEeccC---ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHH
Q 019061 118 GAEVVAWSKG---VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194 (346)
Q Consensus 118 g~~v~~~~~~---~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~ 194 (346)
....+..-.. ....+.++++|+|++|+|...|.|+|....+..++..++||||+++..+.+|..|+|.+.+.|...+
T Consensus 322 d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI 401 (542)
T KOG0609|consen 322 DQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADI 401 (542)
T ss_pred hccccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhh
Confidence 1111111000 1235779999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHc-CC------
Q 019061 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA-RG------ 267 (346)
Q Consensus 195 ~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~-R~------ 267 (346)
.++.|+||++|.+++||++.+.+......|+.|+||+.|+.+..++...+.+++||+.+|+++.+.+--.. ..
T Consensus 402 ~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~ 481 (542)
T KOG0609|consen 402 RAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAK 481 (542)
T ss_pred hcCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888653222 21
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecc
Q 019061 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVT 331 (346)
Q Consensus 268 ~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~ 331 (346)
..+.+.+++.+.... .++. .+.++||.+|.|.|++.++++|..+++++.. +++|++++|+.
T Consensus 482 ~~~d~~Lq~i~~eS~-~ie~-~yghyfD~iIvN~dld~t~~eL~~~iekl~t-epqWVPvsWv~ 542 (542)
T KOG0609|consen 482 QFTDEDLQEIIDESA-RIEQ-QYGHYFDLIIVNSDLDKTFRELKTAIEKLRT-EPQWVPVSWVY 542 (542)
T ss_pred cCCHHHHHHHHHHHH-HHHH-HhhhheeEEEEcCcHHHHHHHHHHHHHHhcc-CCceeeeeccC
Confidence 134566665555543 4443 2368899999999999999999999999976 57999988863
No 8
>PRK12288 GTPase RsgA; Reviewed
Probab=99.93 E-value=2.7e-26 Score=220.21 Aligned_cols=184 Identities=23% Similarity=0.244 Sum_probs=138.3
Q ss_pred eeeeccCCCCCceeccEEEEEecC-C----eeEEEEEeeCCCceEEccc--------ccCCC-----CCCCCCCCccCcc
Q 019061 22 FSLKSRDCETTTVIGDKTYVIAGS-D----ESIGVKIYDRSTGNWLIPA--------VRGIE-----PRPCKGHSAVLLN 83 (346)
Q Consensus 22 ~~~~~~~~~~~~~vGD~v~~~~~~-~----~~~i~~i~~R~~~~l~rp~--------van~~-----~~~~p~~~~~~l~ 83 (346)
|..+.|.+-..|+|||||.|+..+ + .|+|++|+|| +|.|.||+ +||+| .+..|++++.+|
T Consensus 62 ~~~~~~g~~~~~~vGD~V~~~~~~~~~~~~~~~I~~il~R-~n~L~R~~~~~~~q~iaANvD~vlIV~s~~p~~s~~~L- 139 (347)
T PRK12288 62 HRCNIRRTIRSLVTGDRVVWRPGKEALEGVSGVVEAVHPR-TSVLTRPDYYDGVKPIAANIDQIVIVSAVLPELSLNII- 139 (347)
T ss_pred EEEEecccCCCCCCCcEEEEEeCCCcccccceEEEEEecc-cceEECCCcccccceEEEEccEEEEEEeCCCCCCHHHH-
Confidence 455666655569999999998643 2 3999999999 89999999 69998 446799999999
Q ss_pred ccchhhccccCCCCeeEEEeCCCh---HH---HHHH---HHHcCCeEEEeccC-c-------cCCCCCeEEEEcCCCCCh
Q 019061 84 EDRILVIKKGSSSDDCLWFLEVDT---PY---VREQ---KKVVGAEVVAWSKG-V-------IGNVEKPVVITGPSGVGK 146 (346)
Q Consensus 84 ~dr~l~~~~~~~~~~~i~~~k~D~---~~---~~~~---~~~~g~~v~~~~~~-~-------~~~~g~~~~l~GpsG~GK 146 (346)
||||++++..+++++|++||+|. +. ...+ .+..||+++.+|+. . ..+.+++++|+|+|||||
T Consensus 140 -dr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~ki~~~vG~sgVGK 218 (347)
T PRK12288 140 -DRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALTGRISIFVGQSGVGK 218 (347)
T ss_pred -HHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhhCCEEEECCCCCCH
Confidence 99999999999999999999993 11 2222 24678999998865 1 124678999999999999
Q ss_pred HHHHHhhccccCCCcccee-------eecCCcccccccCCeeEEeeCh-----hHH--HHHHhccchhhhhhhhccc
Q 019061 147 GTLISMLMKEFPSMFGFSV-------SHTTRAPRAMEKDGVHYHFTER-----SVM--EKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 147 sTl~~~L~~~~~~~~g~~i-------~~ttr~~~~~~~~g~~y~f~s~-----~~~--~~~~~~~~~~e~~~~~~~~ 209 (346)
|||+|+|.+.....+| .+ +|||+......+.+.+++..++ .+. ........|.|+..+.+.|
T Consensus 219 STLiN~Ll~~~~~~t~-~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~~~~C 294 (347)
T PRK12288 219 SSLINALLPEAEILVG-DVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFVEFRDYLGTC 294 (347)
T ss_pred HHHHHHhccccceeec-cccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhHHHHHHhcCC
Confidence 9999999998776666 44 4899988877776555554332 221 1122344677777766666
No 9
>PRK12289 GTPase RsgA; Reviewed
Probab=99.93 E-value=9.8e-26 Score=216.36 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=124.7
Q ss_pred CCCceeccEEEEEec---CCeeEEEEEeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhccccCCCCeeE
Q 019061 30 ETTTVIGDKTYVIAG---SDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCL 100 (346)
Q Consensus 30 ~~~~~vGD~v~~~~~---~~~~~i~~i~~R~~~~l~rp~van~~------~~~~p~~~~~~l~~dr~l~~~~~~~~~~~i 100 (346)
+..|+|||||.++.. ++.|+|++|+|| +|.|.||++||+| ++.+|.+++.+| +|||+.++..+++++|
T Consensus 49 ~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR-~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~L--dR~L~~a~~~~ip~IL 125 (352)
T PRK12289 49 GQQVMVGDRVIVEEPDWQGQRGAIAEVLPR-KTELDRPPVANADQILLVFALAEPPLDPWQL--SRFLVKAESTGLEIVL 125 (352)
T ss_pred CCCcccCCEEEEeecCCCCCceEEEEEecc-ccceechhhhcCCEEEEEEECCCCCCCHHHH--HHHHHHHHHCCCCEEE
Confidence 456999999999853 347999999999 8999999999998 666788999999 9999999999999999
Q ss_pred EEeCCCh---HHHHHH---HHHcCCeEEEeccCc--------cCCCCCeEEEEcCCCCChHHHHHhhccccCCCcccee-
Q 019061 101 WFLEVDT---PYVREQ---KKVVGAEVVAWSKGV--------IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV- 165 (346)
Q Consensus 101 ~~~k~D~---~~~~~~---~~~~g~~v~~~~~~~--------~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i- 165 (346)
|+||+|. +....+ .+..||+++.+|+.. ..+.+++++|+|+||+|||||+|.|.+.....+| .+
T Consensus 126 VlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~-~vs 204 (352)
T PRK12289 126 CLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLRNKITVVAGPSGVGKSSLINRLIPDVELRVG-KVS 204 (352)
T ss_pred EEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhccceEEEEeCCCCCHHHHHHHHcCccccccc-ccc
Confidence 9999993 222222 256799999888651 2347789999999999999999999988766555 33
Q ss_pred ------eecCCcccccccCCeeEEeeCh
Q 019061 166 ------SHTTRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 166 ------~~ttr~~~~~~~~g~~y~f~s~ 187 (346)
+||||+.....+.+.+|+..++
T Consensus 205 ~~~~rGrHTT~~~~l~~l~~g~~liDTP 232 (352)
T PRK12289 205 GKLGRGRHTTRHVELFELPNGGLLADTP 232 (352)
T ss_pred CCCCCCCCcCceeEEEECCCCcEEEeCC
Confidence 4899999888775555665543
No 10
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.93 E-value=2.3e-25 Score=209.34 Aligned_cols=163 Identities=23% Similarity=0.246 Sum_probs=127.2
Q ss_pred ceeeeccCC----CCCceeccEEEEEec-CCeeEEEEEeeCCCceEEccc--------ccCCC------CCCCCCCCccC
Q 019061 21 GFSLKSRDC----ETTTVIGDKTYVIAG-SDESIGVKIYDRSTGNWLIPA--------VRGIE------PRPCKGHSAVL 81 (346)
Q Consensus 21 ~~~~~~~~~----~~~~~vGD~v~~~~~-~~~~~i~~i~~R~~~~l~rp~--------van~~------~~~~p~~~~~~ 81 (346)
.|..+.|++ +..|+|||||.++.. +++|+|++|+|| +|.|+||+ +||+| ++.+|.+++..
T Consensus 19 ~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~i~~i~~R-~~~l~R~~~~~~~~~i~anvD~vllV~d~~~p~~s~~~ 97 (287)
T cd01854 19 ELRCRARGKLRKKGIKPVVGDWVEVEPDDDGEGVIVRVLPR-KNLLSRPAAGGREQVIAANVDQLVIVVSLNEPFFNPRL 97 (287)
T ss_pred EEEEEeccccccCCCCccCCCEEEEEecCCCcEEEEEEECC-CceEEccCCCCcceeEEEeCCEEEEEEEcCCCCCCHHH
Confidence 344444443 357999999999874 468999999999 89999999 99998 66677789999
Q ss_pred ccccchhhccccCCCCeeEEEeCCCh--H-HH---HHHHHHcCCeEEEeccCc--------cCCCCCeEEEEcCCCCChH
Q 019061 82 LNEDRILVIKKGSSSDDCLWFLEVDT--P-YV---REQKKVVGAEVVAWSKGV--------IGNVEKPVVITGPSGVGKG 147 (346)
Q Consensus 82 l~~dr~l~~~~~~~~~~~i~~~k~D~--~-~~---~~~~~~~g~~v~~~~~~~--------~~~~g~~~~l~GpsG~GKs 147 (346)
+ ||||+.++..+++++|++||+|. + .. .......|++++.+|+.. ..+++++++|+|+||+|||
T Consensus 98 l--dr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~k~~~~~G~sg~GKS 175 (287)
T cd01854 98 L--DRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELREYLKGKTSVLVGQSGVGKS 175 (287)
T ss_pred H--HHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhccceEEEECCCCCCHH
Confidence 9 99999999999999999999994 2 11 122345789999888761 2357899999999999999
Q ss_pred HHHHhhccccCCCcccee-------eecCCcccccccCCeeEEeeCh
Q 019061 148 TLISMLMKEFPSMFGFSV-------SHTTRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 148 Tl~~~L~~~~~~~~g~~i-------~~ttr~~~~~~~~g~~y~f~s~ 187 (346)
||+|.|.+.....+| .+ .|||+........+.+++..++
T Consensus 176 Tlin~l~~~~~~~~g-~v~~~~~~g~~tT~~~~~~~~~~~~~liDtP 221 (287)
T cd01854 176 TLINALLPDLDLATG-EISEKLGRGRHTTTHRELFPLPGGGLLIDTP 221 (287)
T ss_pred HHHHHHhchhhcccc-ceeccCCCCCcccceEEEEEcCCCCEEEECC
Confidence 999999998877666 33 3688877666665455665554
No 11
>PRK00098 GTPase RsgA; Reviewed
Probab=99.92 E-value=5.2e-25 Score=208.01 Aligned_cols=201 Identities=23% Similarity=0.309 Sum_probs=146.4
Q ss_pred ceeeeccCC----CCCceeccEEEEEe-cCCeeEEEEEeeCCCceEEcccc-------cCCC------CCCCCCCCccCc
Q 019061 21 GFSLKSRDC----ETTTVIGDKTYVIA-GSDESIGVKIYDRSTGNWLIPAV-------RGIE------PRPCKGHSAVLL 82 (346)
Q Consensus 21 ~~~~~~~~~----~~~~~vGD~v~~~~-~~~~~~i~~i~~R~~~~l~rp~v-------an~~------~~~~p~~~~~~l 82 (346)
.|..+.|++ +..|+|||||.++. .++.|+|++|+|| +|.|+||++ ||+| ++.+|.++..++
T Consensus 22 ~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~g~i~~i~~R-~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~~~~i 100 (298)
T PRK00098 22 VYQCRARGKFRKKTNTPAVGDRVEFSAENNDEGVILEIHER-KNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFSTDLL 100 (298)
T ss_pred EEEEEeccccccCCCCcCCCCEEEEEECCCCcEEEEEEeCC-CceEECCCCccccceeecCCEEEEEEECCCCCCCHHHH
Confidence 455555553 45599999999987 3468999999999 899999998 9988 666788888999
Q ss_pred cccchhhccccCCCCeeEEEeCCCh----HHH---HHHHHHcCCeEEEeccCc--------cCCCCCeEEEEcCCCCChH
Q 019061 83 NEDRILVIKKGSSSDDCLWFLEVDT----PYV---REQKKVVGAEVVAWSKGV--------IGNVEKPVVITGPSGVGKG 147 (346)
Q Consensus 83 ~~dr~l~~~~~~~~~~~i~~~k~D~----~~~---~~~~~~~g~~v~~~~~~~--------~~~~g~~~~l~GpsG~GKs 147 (346)
+|+|..++..+++++|++||+|. +.. ....+..|++++.+|+.. ...+|++++|+|+||+|||
T Consensus 101 --dr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~gk~~~~~G~sgvGKS 178 (298)
T PRK00098 101 --DRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVGKS 178 (298)
T ss_pred --HHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhccCceEEEECCCCCCHH
Confidence 99999999999999999999994 111 122356789998888651 2458999999999999999
Q ss_pred HHHHhhccccCCCccceee-------ecCCcccccccCCeeEEeeChhHH-------HHHHhccchhhhhhhhccc----
Q 019061 148 TLISMLMKEFPSMFGFSVS-------HTTRAPRAMEKDGVHYHFTERSVM-------EKAIKDGKFLEFASVHGNL---- 209 (346)
Q Consensus 148 Tl~~~L~~~~~~~~g~~i~-------~ttr~~~~~~~~g~~y~f~s~~~~-------~~~~~~~~~~e~~~~~~~~---- 209 (346)
||+|+|.+.....+| .++ |||+..+.....+.+|+..++.+. ........|.++..+.+.|
T Consensus 179 tlin~l~~~~~~~~g-~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~~~~c~f~~ 257 (298)
T PRK00098 179 TLLNALAPDLELKTG-EISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPLSGDCKFRN 257 (298)
T ss_pred HHHHHHhCCcCCCCc-ceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999998877777 553 799888877666555664443221 1111223556665555544
Q ss_pred ---cCCcHHHHHHHHHhCC
Q 019061 210 ---YGTSVEAVEAVADAGK 225 (346)
Q Consensus 210 ---yg~~~~~i~~~~~~~~ 225 (346)
++.+.-.++++.+.|.
T Consensus 258 c~h~~ep~c~v~~a~~~g~ 276 (298)
T PRK00098 258 CTHLHEPGCAVKAAVEEGE 276 (298)
T ss_pred CcCCCCCCChHHHHHHcCC
Confidence 3444444555555555
No 12
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.92 E-value=7.3e-24 Score=190.02 Aligned_cols=184 Identities=38% Similarity=0.589 Sum_probs=160.2
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
...+++++|+||||||||||++.|..... .++..++||||.++..+.+|.+|+|.+.+.|..++..+.|+++.++.+++
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 34789999999999999999999986543 56678999999999999999999999999999988899999999999999
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~ 289 (346)
||++.+.++..++.|+.++++++++++..++...++...+|+.+|+.+++.+|+..|++++.+.+.+|+..+..++...
T Consensus 89 YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~- 167 (206)
T PRK14738 89 YGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQL- 167 (206)
T ss_pred ecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc-
Confidence 9999999999999999999999999999998888888889999999999999999999888889999999887665532
Q ss_pred CCCCceEEEcC--CCHHHHHHHHHHHHHHh
Q 019061 290 SSGIFDHILYN--DKLEECYENLKVICYCL 317 (346)
Q Consensus 290 ~~~~~~~Vi~n--~~le~~~~~l~~iI~~l 317 (346)
..++.++.| .+++++++++.+++...
T Consensus 168 --~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 168 --PEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred --cCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 123444444 68999999999888654
No 13
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.92 E-value=1.6e-24 Score=199.10 Aligned_cols=172 Identities=22% Similarity=0.242 Sum_probs=132.8
Q ss_pred ceeccEEEEEec-CCeeEEEEEeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhccccCCCCeeEEEeCC
Q 019061 33 TVIGDKTYVIAG-SDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEV 105 (346)
Q Consensus 33 ~~vGD~v~~~~~-~~~~~i~~i~~R~~~~l~rp~van~~------~~~~p~~~~~~l~~dr~l~~~~~~~~~~~i~~~k~ 105 (346)
|+|||||.|+.. +++|+|++|+|| .|.|.||.++|+| ++.+|.+++..+ +|+|..++..+++++|++||+
T Consensus 1 ~~vGD~V~~~~~~~~~~~i~~i~eR-~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l--~r~l~~~~~~~i~~vIV~NK~ 77 (245)
T TIGR00157 1 LVVGDRVVWEPGNVVKVYGGAIAER-KNELTRPIVANIDQIVIVSSAVLPELSLNQL--DRFLVVAEAQNIEPIIVLNKI 77 (245)
T ss_pred CCCCcEEEEEecCCCceEEEEEecc-cceEECcccccCCEEEEEEECCCCCCCHHHH--HHHHHHHHHCCCCEEEEEECc
Confidence 689999999874 468999999999 8999999999998 677899999999 999999998999999999999
Q ss_pred Ch---HHH----HHHHHHcCCeEEEeccC-c-------cCCCCCeEEEEcCCCCChHHHHHhhccccCCCcccee-----
Q 019061 106 DT---PYV----REQKKVVGAEVVAWSKG-V-------IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV----- 165 (346)
Q Consensus 106 D~---~~~----~~~~~~~g~~v~~~~~~-~-------~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i----- 165 (346)
|+ ... ....+..||+++..|+. . ....+++++|+|+||+|||||+|.|.+.....+| .+
T Consensus 78 DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~-~i~~~~~ 156 (245)
T TIGR00157 78 DLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSLINALDPSVKQQVN-DISSKLG 156 (245)
T ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHHHHHHhhhhhcccc-ceeccCC
Confidence 93 111 12224678999988865 1 2357899999999999999999999998776666 33
Q ss_pred --eecCCcccccccCCeeEEeeChhHH-------HHHHhccchhhhhhhhccc
Q 019061 166 --SHTTRAPRAMEKDGVHYHFTERSVM-------EKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 166 --~~ttr~~~~~~~~g~~y~f~s~~~~-------~~~~~~~~~~e~~~~~~~~ 209 (346)
+|||+........ .+|+..++.+. ........|.|+..+...|
T Consensus 157 ~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~~C 208 (245)
T TIGR00157 157 LGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLGEC 208 (245)
T ss_pred CCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHhCHHHHHHhCCC
Confidence 4899988777664 44664443221 1122345677776666655
No 14
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.91 E-value=1.1e-23 Score=186.68 Aligned_cols=187 Identities=54% Similarity=0.874 Sum_probs=174.2
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
....+.++|.||+|+||+|++++|...++..+|..++||||.++..+.+|.+|+|++.+.|..++..+.|+|+..+.++.
T Consensus 34 p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~ 113 (231)
T KOG0707|consen 34 PGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNK 113 (231)
T ss_pred CCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhccc
Confidence 34558999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~ 289 (346)
||++++.+++....++.+++|++.++.+.++....+...+++.+|+...+++|+.+|+.++.+.+.+|+..+.+++...+
T Consensus 114 yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~ 193 (231)
T KOG0707|consen 114 YGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILE 193 (231)
T ss_pred CCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhcccc
Confidence 99999999998889999999999999999999989999999999999999999999999999999999998888887777
Q ss_pred CCCCceEEEcC-CCHHHHHHHHHHHHHH
Q 019061 290 SSGIFDHILYN-DKLEECYENLKVICYC 316 (346)
Q Consensus 290 ~~~~~~~Vi~n-~~le~~~~~l~~iI~~ 316 (346)
.++.|+.++.| ++++++.+++..++..
T Consensus 194 ~~g~~d~~~~ns~~lee~~kel~~~~~~ 221 (231)
T KOG0707|consen 194 NSGSFDLVIVNSDRLEEAYKELEIFISS 221 (231)
T ss_pred CCccccceecCCCchhhhhhhhhhhhhH
Confidence 77889999999 8999999998877653
No 15
>PRK01889 GTPase RsgA; Reviewed
Probab=99.91 E-value=7.2e-24 Score=204.68 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=119.3
Q ss_pred CCCceeccEEEEEecCCeeEEEEEeeCCCceEEccc----------ccCCC-----CCCCCCCCccCccccchhhccccC
Q 019061 30 ETTTVIGDKTYVIAGSDESIGVKIYDRSTGNWLIPA----------VRGIE-----PRPCKGHSAVLLNEDRILVIKKGS 94 (346)
Q Consensus 30 ~~~~~vGD~v~~~~~~~~~~i~~i~~R~~~~l~rp~----------van~~-----~~~~p~~~~~~l~~dr~l~~~~~~ 94 (346)
...|+|||||.++. ++.|+|++|+|| +|.|.||+ +||+| .+.+|+|++.++ ||||++++..
T Consensus 66 ~~~~~vGD~V~~~~-~~~g~I~~i~pR-~~~L~R~~~~~~~~~q~iaANvD~vliV~s~~p~~~~~~l--dr~L~~a~~~ 141 (356)
T PRK01889 66 GDRPAVGDWVLLDN-EKKARIVRLLPR-RSLFSRKAAGTRSEEQLIAANVDTVFIVCSLNHDFNLRRI--ERYLALAWES 141 (356)
T ss_pred CCCCccCcEEEEec-CCceEEEEEECC-CceEEcCCCCCCccceeEEEeCCEEEEEEecCCCCChhHH--HHHHHHHHHc
Confidence 35699999999986 568999999999 89999999 49999 555799999999 9999999999
Q ss_pred CCCeeEEEeCCCh--H---HHHHHHH-HcCCeEEEeccC-cc--------CCCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 95 SSDDCLWFLEVDT--P---YVREQKK-VVGAEVVAWSKG-VI--------GNVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 95 ~~~~~i~~~k~D~--~---~~~~~~~-~~g~~v~~~~~~-~~--------~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
+++|+|++||+|+ + ..+.+.+ ..||+++.+|.. .. ..+|++++|+|+||+|||||+|.|.+...+
T Consensus 142 ~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~ 221 (356)
T PRK01889 142 GAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ 221 (356)
T ss_pred CCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc
Confidence 9999999999994 1 1222222 458999998865 21 236899999999999999999999998887
Q ss_pred Ccccee-------eecCCcccccccCCeeEEeeC
Q 019061 160 MFGFSV-------SHTTRAPRAMEKDGVHYHFTE 186 (346)
Q Consensus 160 ~~g~~i-------~~ttr~~~~~~~~g~~y~f~s 186 (346)
..| .+ .|||+........+.++++.+
T Consensus 222 ~~G-~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt 254 (356)
T PRK01889 222 KTG-AVREDDSKGRHTTTHRELHPLPSGGLLIDT 254 (356)
T ss_pred cee-eEEECCCCCcchhhhccEEEecCCCeecCC
Confidence 777 43 356655544444444455544
No 16
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.90 E-value=1.1e-22 Score=177.99 Aligned_cols=179 Identities=51% Similarity=0.794 Sum_probs=158.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~ 212 (346)
|++++|+|||||||||+++.|.+..+. .+..++++||.+..++.++..|+|.+...|...+..+.|+++..+.+++|+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT 79 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence 689999999999999999999998754 4447789999998888889999999988888878888999988899999999
Q ss_pred cHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Q 019061 213 SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (346)
Q Consensus 213 ~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~ 292 (346)
+.+.++..+..+..+++|+++.+...++........+++.+|+.+.+.+|+..|++++++.+++|+..+..++.+ ..
T Consensus 80 ~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~---~~ 156 (180)
T TIGR03263 80 PKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAH---AD 156 (180)
T ss_pred cHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---cc
Confidence 999999999999999999999999988887777888999899999999999999988899999999888766543 44
Q ss_pred CceEEEcCCCHHHHHHHHHHHHH
Q 019061 293 IFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 293 ~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
.++.++.|++++++.+++.+++.
T Consensus 157 ~~d~~i~n~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 157 EFDYVIVNDDLEKAVEELKSIIL 179 (180)
T ss_pred cCcEEEECCCHHHHHHHHHHHHh
Confidence 58999999999999998888763
No 17
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.89 E-value=3.6e-22 Score=178.36 Aligned_cols=183 Identities=47% Similarity=0.735 Sum_probs=162.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~y 210 (346)
.+|++++|+||||||||||++.|.+.++ .....+++|||.++.++.+|.+|.|.+...+...+..+.|+++..+.++.|
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 81 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY 81 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence 4789999999999999999999999876 456577899999988888999999999888888888888998888888999
Q ss_pred CCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Q 019061 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (346)
Q Consensus 211 g~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~ 290 (346)
+.+...+......|..+++|+++.+...+.........|++.+|+.+.+.+|+..|+.++.+.+++|+..+..+..++
T Consensus 82 ~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~-- 159 (205)
T PRK00300 82 GTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAHA-- 159 (205)
T ss_pred cCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhH--
Confidence 999988999999999999999999999888877778889999999999999999999889999999999887665542
Q ss_pred CCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 291 SGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 291 ~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
..++.++.|+++++++.++..++...
T Consensus 160 -~~~d~vi~n~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 160 -SEYDYVIVNDDLDTALEELKAIIRAE 185 (205)
T ss_pred -HhCCEEEECCCHHHHHHHHHHHHHHH
Confidence 34788888999999999999988765
No 18
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.80 E-value=4.2e-19 Score=149.06 Aligned_cols=120 Identities=58% Similarity=0.918 Sum_probs=111.8
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCCcH
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSV 214 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~~~ 214 (346)
+++|+||||||||||++.|.+.++..++..++||||.++..+.+|..|+|.+...|..+..++.|+++..+.++.||.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 47899999999999999999988777777889999999998899999999999999888999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCC
Q 019061 215 EAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254 (346)
Q Consensus 215 ~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p 254 (346)
+.+++..+.++.+++|++++++..++.....+..||+.+|
T Consensus 81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~ 120 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP 120 (137)
T ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC
Confidence 9999999999999999999999999998888899999987
No 19
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.75 E-value=8.4e-17 Score=141.91 Aligned_cols=177 Identities=23% Similarity=0.224 Sum_probs=127.6
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~ 212 (346)
|++++|+||||||||||+++|.+...+..-.....+++..+.. +..+++...+.|..++..+.|.+.+.+.+++||+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 6899999999999999999998876543222223455543322 3456777777777778888888788899999999
Q ss_pred cHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Q 019061 213 SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (346)
Q Consensus 213 ~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~ 292 (346)
+. .++..+..+..+++++.......+++.......+++.+++.+++.+|+..|+..+.+.+.+|+.+.. .+.
T Consensus 79 ~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~~----~~~--- 150 (186)
T PRK10078 79 GI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARAA----RYQ--- 150 (186)
T ss_pred cH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHhh----hhc---
Confidence 98 4888888888888887766655665554455555566677999999999888777888999996532 111
Q ss_pred Cce-EEEcCC-CHHHHHHHHHHHHHHhhcc
Q 019061 293 IFD-HILYND-KLEECYENLKVICYCLMQI 320 (346)
Q Consensus 293 ~~~-~Vi~n~-~le~~~~~l~~iI~~l~~~ 320 (346)
.++ .++.++ +++++.+++.+++..-++.
T Consensus 151 ~ad~~vi~~~~s~ee~~~~i~~~l~~~~~~ 180 (186)
T PRK10078 151 PQDCHTLNNDGSLRQSVDTLLTLLHLSQKE 180 (186)
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHhhcCcc
Confidence 134 334333 7999999888887654443
No 20
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.65 E-value=6.3e-15 Score=128.81 Aligned_cols=173 Identities=23% Similarity=0.274 Sum_probs=124.5
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCc--cceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMF--GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~--g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~y 210 (346)
|++++|+|||||||||+++.|+..+.... ....++|||.... .|..|.|.+.+.|..+...+.|.+...+.++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASA---GGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCC---CCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 56899999999999999999988765432 2234677776433 466788888888877677777887777777889
Q ss_pred CCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Q 019061 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (346)
Q Consensus 211 g~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~ 290 (346)
|.+. .+...+..+..+++++........+.......++++. ++.+.+.+|+..|+..+.+.+.+|+....... .
T Consensus 78 g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~----~ 151 (179)
T TIGR02322 78 GIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNIT-ASPDVLAQRLAARGRESREEIEERLARSARFA----A 151 (179)
T ss_pred cChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHHHhhcc----c
Confidence 9886 4666677888999999877666665544445566665 56899999999998777788888886433211 0
Q ss_pred CCCceEE-EcC-CCHHHHHHHHHHHHH
Q 019061 291 SGIFDHI-LYN-DKLEECYENLKVICY 315 (346)
Q Consensus 291 ~~~~~~V-i~n-~~le~~~~~l~~iI~ 315 (346)
..++.+ +.+ .+++++.+++.+++.
T Consensus 152 -~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 152 -APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred -ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 112333 444 489999888887764
No 21
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=4.3e-17 Score=146.91 Aligned_cols=183 Identities=19% Similarity=0.176 Sum_probs=127.5
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHH
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~ 192 (346)
+.+.|+...+..+.++...+|++++|+||||||||||+|.|++...+..| .+....++. .......+|+||+..+|+.
T Consensus 9 v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G-~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW 86 (248)
T COG1116 9 VSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG-EVLLDGRPV-TGPGPDIGYVFQEDALLPW 86 (248)
T ss_pred eEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCccc-CCCCCCEEEEeccCcccch
Confidence 34566766666667788889999999999999999999999999999888 665544444 3334568899999999988
Q ss_pred HHhccchhhhhhhhccccCCcHHH----HHHHHH-hCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 193 AIKDGKFLEFASVHGNLYGTSVEA----VEAVAD-AGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 193 ~~~~~~~~e~~~~~~~~yg~~~~~----i~~~~~-~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
. ++.+|..+.-...+.+.+. +++.++ .|..-.-|-.|.++..-++++....+.++..|.+..|||++.+.|
T Consensus 87 ~----Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALD 162 (248)
T COG1116 87 L----TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162 (248)
T ss_pred h----hHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhh
Confidence 7 7777766655554433322 222222 222223333455444445555555667777777888888888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHH
Q 019061 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308 (346)
Q Consensus 268 ~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~ 308 (346)
..+.+.+++-+....++.. .+.++++||++|+..
T Consensus 163 alTR~~lq~~l~~lw~~~~-------~TvllVTHdi~EAv~ 196 (248)
T COG1116 163 ALTREELQDELLRLWEETR-------KTVLLVTHDVDEAVY 196 (248)
T ss_pred HHHHHHHHHHHHHHHHhhC-------CEEEEEeCCHHHHHh
Confidence 7777777777766554422 578999999999765
No 22
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.62 E-value=2.3e-14 Score=120.47 Aligned_cols=178 Identities=24% Similarity=0.280 Sum_probs=133.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCc--cceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMF--GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~--g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
.|+.++++||||+||.||+......+.... .+.-+..||+...+..+ ....+...|.....++.|.-.++.++.+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~Ed---H~avs~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGED---HDALSEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCccc---ccccCHHHHHHHhhcCceeEEehhcCcc
Confidence 689999999999999999999887765543 32335677776554222 2345667787778888999999999999
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~ 289 (346)
||.+.+ ++..++.|..++..+...-+-+.+..+.....+.++.+ +++|.+||..||.++.++|.+|+.+....-.
T Consensus 81 Ygip~e-Id~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~-p~VLaqRL~~RGREs~eeI~aRL~R~a~~~~--- 155 (192)
T COG3709 81 YGIPAE-IDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITAS-PEVLAQRLAERGRESREEILARLARAARYTA--- 155 (192)
T ss_pred ccCchh-HHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecC-HHHHHHHHHHhccCCHHHHHHHHHhhccccc---
Confidence 999975 67778899999988877767777777776666666554 7999999999999999999999987542211
Q ss_pred CCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 290 SSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 290 ~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
...-+..+..+..++.+.+++...+.+-
T Consensus 156 ~~~dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 156 GPGDVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred CCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence 1333455666669999888777766543
No 23
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.2e-16 Score=151.46 Aligned_cols=185 Identities=17% Similarity=0.175 Sum_probs=117.8
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhH
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSV 189 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~ 189 (346)
++.|.||...+..+.++.+.+|++++|+|||||||||++++|+++..+..| .|....+... .-+..+++++||+..+
T Consensus 8 ~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G-~I~i~g~~vt~l~P~~R~iamVFQ~yAL 86 (338)
T COG3839 8 NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG-EILIDGRDVTDLPPEKRGIAMVFQNYAL 86 (338)
T ss_pred eeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhHCCEEEEeCCccc
Confidence 445677765345556677889999999999999999999999999999888 5543222211 1123578999999999
Q ss_pred HHHHHhccchhhhhhhhccccCCcHHHHHHHHHh-----CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHH
Q 019061 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (346)
Q Consensus 190 ~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~-----~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~ 264 (346)
|+.| ++.++..|.-...+.+++.+++..+. +..-+||-.|.++..-++|+....+.++..|+.-.+||+++
T Consensus 87 yPhm----tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 87 YPHM----TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred cCCC----cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 9998 88888888777777776655443321 11223333333333333333333344455555555555565
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHH
Q 019061 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308 (346)
Q Consensus 265 ~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~ 308 (346)
+.|......++..+..+++++. .+.|+++||..|+..
T Consensus 163 nLDa~lR~~mr~ei~~lh~~l~-------~T~IYVTHDq~EAmt 199 (338)
T COG3839 163 NLDAKLRVLMRSEIKKLHERLG-------TTTIYVTHDQVEAMT 199 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHhcC-------CcEEEEcCCHHHHHh
Confidence 5544445566666655554433 367778888777654
No 24
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.57 E-value=5.5e-16 Score=147.80 Aligned_cols=188 Identities=16% Similarity=0.125 Sum_probs=122.8
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhH
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~ 189 (346)
++.|.||...+..+.++.+.+|++++|+|||||||||++++|++...|..| .|....+.. -..+..+++++||+..+
T Consensus 10 ~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i~~lpp~kR~ig~VFQ~YAL 88 (352)
T COG3842 10 NVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDITDVPPEKRPIGMVFQSYAL 88 (352)
T ss_pred eeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhhcccceeecCccc
Confidence 456888866666777788899999999999999999999999999999888 543222111 22234568899999999
Q ss_pred HHHHHhccchhhhhhhhccccC-CcHHHHHHHHH-hCCceEEE----ecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHH
Q 019061 190 MEKAIKDGKFLEFASVHGNLYG-TSVEAVEAVAD-AGKRCILD----IDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (346)
Q Consensus 190 ~~~~~~~~~~~e~~~~~~~~yg-~~~~~i~~~~~-~~~~~iLD----~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL 263 (346)
|+.+ ++.++..|.-...+ ...+.+++... .-..+-|+ -.|..+..-++++....+.+...|....|||++
T Consensus 89 FPHl----tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 89 FPHM----TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CCCC----cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 9998 88888777655322 23232322221 11111111 122222223344444556788888899999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHH
Q 019061 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311 (346)
Q Consensus 264 ~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~ 311 (346)
.+.+....+.++.-+...+.++ -.+.|+++||.+++...-.
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~-------giT~i~VTHDqeEAl~msD 205 (352)
T COG3842 165 SALDAKLREQMRKELKELQREL-------GITFVYVTHDQEEALAMSD 205 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhc-------CCeEEEEECCHHHHhhhcc
Confidence 9887444444444444333332 2578999999999876433
No 25
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.57 E-value=3.6e-16 Score=140.61 Aligned_cols=186 Identities=15% Similarity=0.192 Sum_probs=133.0
Q ss_pred HHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecC---Cccccc-ccCCeeEEeeC
Q 019061 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT---RAPRAM-EKDGVHYHFTE 186 (346)
Q Consensus 111 ~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~tt---r~~~~~-~~~g~~y~f~s 186 (346)
+++.|.|+...+..+.++.+..|++++|+|||||||||+++||.++..|+.| .|.... +..... -+..+||+.|.
T Consensus 5 ~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G-~I~i~g~~i~~~d~~~LRr~IGYviQq 83 (309)
T COG1125 5 ENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDISDLDPVELRRKIGYVIQQ 83 (309)
T ss_pred eeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCc-eEEECCeecccCCHHHHHHhhhhhhhh
Confidence 3456788888888888888999999999999999999999999999999998 554211 111111 23468899999
Q ss_pred hhHHHHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHH--------HHcCCCCeEEEEEcCCCHHH
Q 019061 187 RSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS--------VRASPLDAIFIFICPPSMEE 258 (346)
Q Consensus 187 ~~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~--------l~~~~~~~~~ill~~p~~~~ 258 (346)
..+|+.+ ++.++...-..+.+-+++.+++...+ ..-+++++|..... -++++.-..+.+...|+...
T Consensus 84 igLFPh~----Tv~eNIa~VP~L~~w~k~~i~~r~~E-Ll~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 84 IGLFPHL----TVAENIATVPKLLGWDKERIKKRADE-LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred cccCCCc----cHHHHHHhhhhhcCCCHHHHHHHHHH-HHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 9999988 77888777666666666555544322 22233444532221 12233334467778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHH
Q 019061 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN 309 (346)
Q Consensus 259 l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~ 309 (346)
++|++.+.+.-+...+++-+...+.++.. +.|+++||++|+++-
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~k-------TivfVTHDidEA~kL 202 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGK-------TIVFVTHDIDEALKL 202 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCC-------EEEEEecCHHHHHhh
Confidence 99999999888888888888877766543 789999999998763
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.54 E-value=8.5e-15 Score=129.07 Aligned_cols=188 Identities=16% Similarity=0.090 Sum_probs=123.4
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeec----CCcccccccCCeeEEeeCh
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT----TRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~t----tr~~~~~~~~g~~y~f~s~ 187 (346)
++.|.||...++.+.+++..+|++++++||||||||||+++|.++..+..|...... .......-+..++++||++
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~f 86 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQF 86 (240)
T ss_pred eeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccc
Confidence 456889988888888888999999999999999999999999999998888333221 1111111234588999999
Q ss_pred hHHHHHHhccchhhhhhhhccc-cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 188 SVMEKAIKDGKFLEFASVHGNL-YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~~-yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
++|+.+ +++++.....-. .+.+++.+++.... .+.+ -.|.++....
T Consensus 87 nLFPHl----TvleNv~lap~~v~~~~k~eA~~~A~~--------------lL~~---------------VGL~~ka~~y 133 (240)
T COG1126 87 NLFPHL----TVLENVTLAPVKVKKLSKAEAREKALE--------------LLEK---------------VGLADKADAY 133 (240)
T ss_pred cccccc----hHHHHHHhhhHHHcCCCHHHHHHHHHH--------------HHHH---------------cCchhhhhhC
Confidence 999988 888887765433 56666555443211 1111 1222333334
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccch
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLT 336 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~ 336 (346)
....+.+.+||+.++++..-. +..-+||+.-...|+|-+ .++...+..|.. .+.+-+.+.|-+.++
T Consensus 134 P~qLSGGQqQRVAIARALaM~-P~vmLFDEPTSALDPElv-~EVL~vm~~LA~--eGmTMivVTHEM~FA 199 (240)
T COG1126 134 PAQLSGGQQQRVAIARALAMD-PKVMLFDEPTSALDPELV-GEVLDVMKDLAE--EGMTMIIVTHEMGFA 199 (240)
T ss_pred ccccCcHHHHHHHHHHHHcCC-CCEEeecCCcccCCHHHH-HHHHHHHHHHHH--cCCeEEEEechhHHH
Confidence 445578999999999876433 122346666666687654 556667777754 345544556655443
No 27
>PRK08356 hypothetical protein; Provisional
Probab=99.49 E-value=6e-13 Score=118.24 Aligned_cols=176 Identities=19% Similarity=0.231 Sum_probs=115.2
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~ 212 (346)
..+++|+||+||||||+++.|.. .. .. .++++++..+..+..+.+|.|.+...+..+...+.++++..+..+.||.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g--~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~ 80 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KG--FC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGE 80 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CC--Cc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCc
Confidence 46789999999999999999953 21 22 5666766666666677889998877776656667899999999999997
Q ss_pred cH---HHHHHHHHhCCceEEEec--HHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCC------CHHHHHHHHHHH
Q 019061 213 SV---EAVEAVADAGKRCILDID--VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE------TEDQILKRLRNA 281 (346)
Q Consensus 213 ~~---~~i~~~~~~~~~~iLD~~--~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~------~~e~i~~Rl~~~ 281 (346)
+. ..++.. .....+++|+. +..+..++.. ...++++..| .+.+.+|+..|+.. +.+.+ .|+...
T Consensus 81 ~~~~~~~~~~~-~~~~~ividG~r~~~q~~~l~~~--~~~vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~~e~~-~~~~~~ 155 (195)
T PRK08356 81 DILIRLAVDKK-RNCKNIAIDGVRSRGEVEAIKRM--GGKVIYVEAK-PEIRFERLRRRGAEKDKGIKSFEDF-LKFDEW 155 (195)
T ss_pred HHHHHHHHHHh-ccCCeEEEcCcCCHHHHHHHHhc--CCEEEEEECC-HHHHHHHHHhcCCccccccccHHHH-HHHHHH
Confidence 63 222222 22345777764 3333333432 2355556555 68899999988765 33444 333222
Q ss_pred HHHH-HhccCCCCceEEEcC-CCHHHHHHHHHHHHHHh
Q 019061 282 KEEI-KQGKSSGIFDHILYN-DKLEECYENLKVICYCL 317 (346)
Q Consensus 282 ~~~i-~~~~~~~~~~~Vi~n-~~le~~~~~l~~iI~~l 317 (346)
+..+ ........+|.++.| .+++++.+++.+++..+
T Consensus 156 ~~~l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 156 EEKLYHTTKLKDKADFVIVNEGTLEELRKKVEEILREL 193 (195)
T ss_pred HHHhhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 2221 111123457888887 59999999999888765
No 28
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.49 E-value=6.4e-14 Score=125.94 Aligned_cols=177 Identities=18% Similarity=0.164 Sum_probs=106.7
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeee---cCCcc----cccccCCeeEEeeChhHHHHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH---TTRAP----RAMEKDGVHYHFTERSVMEKAI 194 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~---ttr~~----~~~~~~g~~y~f~s~~~~~~~~ 194 (346)
+....++.+.+|++++++||||||||||+|+|.+...|+.|..... .+... .......++|+||+..+++.+
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l- 98 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL- 98 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC-
Confidence 3444557788999999999999999999999999999977742221 11111 123345689999999988876
Q ss_pred hccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHH-cCCCCCHHH
Q 019061 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR-ARGTETEDQ 273 (346)
Q Consensus 195 ~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~-~R~~~~~e~ 273 (346)
+..|+......+.+.+.....+.... +.. ...+.++.. .+..+.+.+
T Consensus 99 ---tv~ENv~lpl~~~~~~~~~~~~~~~~---------------l~~--------------~lgl~~~~~~~~p~eLSGG 146 (226)
T COG1136 99 ---TVLENVELPLLIAGKSAGRRKRAAEE---------------LLE--------------VLGLEDRLLKKKPSELSGG 146 (226)
T ss_pred ---CHHHHHHhHHHHcCCChhHHHHHHHH---------------HHH--------------hcCChhhhccCCchhcCHH
Confidence 88888776544444443211111111 000 012333444 334566899
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 274 i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
.+||++.+++.+... ..-+.|+-.+|-|.+. .+.+.+++..+.... +.+++.+.|+++
T Consensus 147 qqQRVAIARAL~~~P-~iilADEPTgnLD~~t-~~~V~~ll~~~~~~~-g~tii~VTHd~~ 204 (226)
T COG1136 147 QQQRVAIARALINNP-KIILADEPTGNLDSKT-AKEVLELLRELNKER-GKTIIMVTHDPE 204 (226)
T ss_pred HHHHHHHHHHHhcCC-CeEEeeCccccCChHH-HHHHHHHHHHHHHhc-CCEEEEEcCCHH
Confidence 999999999887651 1112233333334433 345666777775433 344446677555
No 29
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.43 E-value=9.7e-15 Score=130.54 Aligned_cols=186 Identities=14% Similarity=0.125 Sum_probs=123.0
Q ss_pred HHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee-ecCCcc------cccccCCeeEE
Q 019061 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-HTTRAP------RAMEKDGVHYH 183 (346)
Q Consensus 111 ~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~-~ttr~~------~~~~~~g~~y~ 183 (346)
+.+.+++|..++..+.++...+|++++++||||+|||||++.|.++..|..| .|. +..... ...-....++.
T Consensus 12 r~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~G-eI~i~G~~i~~ls~~~~~~ir~r~Gvl 90 (263)
T COG1127 12 RGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG-EILIDGEDIPQLSEEELYEIRKRMGVL 90 (263)
T ss_pred eeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCC-eEEEcCcchhccCHHHHHHHHhheeEE
Confidence 4667889999999999999999999999999999999999999999999988 443 222111 11123468899
Q ss_pred eeChhHHHHHHhccchhhhhhhhcccc-CCcHHHHHHHHHh-----CCc-eEEEecHHHHHHHHcCCCCeEEEEEcCCCH
Q 019061 184 FTERSVMEKAIKDGKFLEFASVHGNLY-GTSVEAVEAVADA-----GKR-CILDIDVQGARSVRASPLDAIFIFICPPSM 256 (346)
Q Consensus 184 f~s~~~~~~~~~~~~~~e~~~~~~~~y-g~~~~~i~~~~~~-----~~~-~iLD~~~~~~~~l~~~~~~~~~ill~~p~~ 256 (346)
||...+|..+ ++.|+..+.-.-| ..+.+.+++.... |.. ...|..|..+..-+.++....+.+...|++
T Consensus 91 FQ~gALFssl----tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPel 166 (263)
T COG1127 91 FQQGALFSSL----TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPEL 166 (263)
T ss_pred eecccccccc----chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCE
Confidence 9999999877 7777766543322 3444444443221 111 112223332222222222233445556666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHH
Q 019061 257 EELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308 (346)
Q Consensus 257 ~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~ 308 (346)
..++|+..+.|.-+...+.+.+...+..+. .+.++++||+++++.
T Consensus 167 l~~DEPtsGLDPI~a~~~~~LI~~L~~~lg-------~T~i~VTHDl~s~~~ 211 (263)
T COG1127 167 LFLDEPTSGLDPISAGVIDELIRELNDALG-------LTVIMVTHDLDSLLT 211 (263)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHhhC-------CEEEEEECChHHHHh
Confidence 677778888888788888888887776654 367788888877654
No 30
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=7e-14 Score=128.99 Aligned_cols=187 Identities=16% Similarity=0.141 Sum_probs=114.2
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCC---c-cc-ccccCCeeEEeeC
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR---A-PR-AMEKDGVHYHFTE 186 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr---~-~~-~~~~~g~~y~f~s 186 (346)
...+.++......+.++.+..|+.++|+||||||||||+++|+|+..|..|...-+ .+ . .. ......+||+||.
T Consensus 7 ~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~-~~~l~D~~~~~~~~R~VGfvFQ~ 85 (345)
T COG1118 7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN-GRVLFDVSNLAVRDRKVGFVFQH 85 (345)
T ss_pred hhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEEC-CEeccchhccchhhcceeEEEec
Confidence 34455554444444556778999999999999999999999999999998843322 22 1 11 1122468999999
Q ss_pred hhHHHHHHhccchhhhhhhhccccC-Cc-H----HHHHHHHHhCC-ceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHH
Q 019061 187 RSVMEKAIKDGKFLEFASVHGNLYG-TS-V----EAVEAVADAGK-RCILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (346)
Q Consensus 187 ~~~~~~~~~~~~~~e~~~~~~~~yg-~~-~----~~i~~~~~~~~-~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l 259 (346)
..+|+.+ ++.++..|.-.+.. .+ . ..+.+.++... .-+-|-.|.++..-++++....+.+...|+...|
T Consensus 86 YALF~Hm----tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLL 161 (345)
T COG1118 86 YALFPHM----TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLL 161 (345)
T ss_pred hhhcccc----hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEee
Confidence 9999988 77777666543321 11 1 12222222111 1111123333333334444445566777777788
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHH
Q 019061 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310 (346)
Q Consensus 260 ~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l 310 (346)
||++.+.|..-..++++-+........ ...++++||.+++++-.
T Consensus 162 DEPf~ALDa~vr~~lr~wLr~~~~~~~-------~ttvfVTHD~eea~~la 205 (345)
T COG1118 162 DEPFGALDAKVRKELRRWLRKLHDRLG-------VTTVFVTHDQEEALELA 205 (345)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhC-------ceEEEEeCCHHHHHhhc
Confidence 888877764444555555544433322 57899999999987643
No 31
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.42 E-value=4.1e-13 Score=126.67 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=77.3
Q ss_pred HHHHHcC-CeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc---ccccCCeeEEeeCh
Q 019061 112 EQKKVVG-AEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTER 187 (346)
Q Consensus 112 ~~~~~~g-~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~g~~y~f~s~ 187 (346)
++.|.+| ...+..+.++...+|++++|+|||||||||++++|++...+..| .+........ ......++|+++..
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G-~i~i~G~~~~~~~~~~~~~igy~~~~~ 87 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG-EILVLGYDVVKEPAKVRRRIGYVPQEP 87 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEEcCEeCccCHHHHHhheEEEccCC
Confidence 4567788 68888888888899999999999999999999999999999888 5543321111 12234589999998
Q ss_pred hHHHHHHhccchhhhhhhhccccCCc
Q 019061 188 SVMEKAIKDGKFLEFASVHGNLYGTS 213 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~~yg~~ 213 (346)
.+++.+ +..|+..+...+|+..
T Consensus 88 ~~~~~l----T~~e~l~~~~~l~~~~ 109 (293)
T COG1131 88 SLYPEL----TVRENLEFFARLYGLS 109 (293)
T ss_pred CCCccc----cHHHHHHHHHHHhCCC
Confidence 888877 8889999999999876
No 32
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.41 E-value=5e-13 Score=116.68 Aligned_cols=187 Identities=17% Similarity=0.217 Sum_probs=117.8
Q ss_pred HHHHHcCCeE-EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee---ecCCcccccccCCeeEEeeCh
Q 019061 112 EQKKVVGAEV-VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS---HTTRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 112 ~~~~~~g~~v-~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~---~ttr~~~~~~~~g~~y~f~s~ 187 (346)
.+.|+|+..+ .....+++...|++++|+||||+||||++++|..++.|..|.... .+.+.+. ..+.+++..|-..
T Consensus 6 ~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~-~vrr~IGVl~~e~ 84 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-FVRRKIGVLFGER 84 (245)
T ss_pred ehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH-HHhhhcceecCCc
Confidence 4567777655 233445778899999999999999999999999999999984322 2333332 2334566677666
Q ss_pred hHHHHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 188 SVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
.++..+ +..|+..|.+.+|+....++++..+.-. +.+.- .+.++.|.
T Consensus 85 glY~Rl----T~rEnl~~Fa~L~~l~~~~~kari~~l~-----------k~l~l--------------~~~~~rRv---- 131 (245)
T COG4555 85 GLYARL----TARENLKYFARLNGLSRKEIKARIAELS-----------KRLQL--------------LEYLDRRV---- 131 (245)
T ss_pred Chhhhh----hHHHHHHHHHHHhhhhhhHHHHHHHHHH-----------HHhCh--------------HHHHHHHH----
Confidence 777777 8889999999999988776655443200 00000 12333333
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC---CHH-HHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYND---KLE-ECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 268 ~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~---~le-~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
..-+.+++||+..+++.+.. +..++-++ -+| .+...+.+.|.++.. +++++++..|.++.+..+|
T Consensus 132 ~~~S~G~kqkV~iARAlvh~------P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealC 200 (245)
T COG4555 132 GEFSTGMKQKVAIARALVHD------PSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALC 200 (245)
T ss_pred hhhchhhHHHHHHHHHHhcC------CCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhh
Confidence 33457888888888877654 12222222 222 223455666666643 3566667777777777666
No 33
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=9.7e-13 Score=117.51 Aligned_cols=192 Identities=17% Similarity=0.157 Sum_probs=114.7
Q ss_pred HHHHHc-CCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecC-Ccc------cccccCCeeEE
Q 019061 112 EQKKVV-GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT-RAP------RAMEKDGVHYH 183 (346)
Q Consensus 112 ~~~~~~-g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~tt-r~~------~~~~~~g~~y~ 183 (346)
++.+.| +......+.++++.+|+.++|+||||||||||+++|.+..++..| .+.... ... ....+..++|+
T Consensus 8 nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G-~i~~~g~~i~~~~~k~lr~~r~~iGmI 86 (258)
T COG3638 8 NLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-EILFNGVQITKLKGKELRKLRRDIGMI 86 (258)
T ss_pred eeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc-eEEecccchhccchHHHHHHHHhceeE
Confidence 344556 556666666778899999999999999999999999999998888 443222 111 11224568999
Q ss_pred eeChhHHHHHHhccchhhhhhh--------hccccCCc-HHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCC
Q 019061 184 FTERSVMEKAIKDGKFLEFASV--------HGNLYGTS-VEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254 (346)
Q Consensus 184 f~s~~~~~~~~~~~~~~e~~~~--------~~~~yg~~-~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p 254 (346)
||.+.+.+.+ .++++... ...+++.. .++-..+++. +.+
T Consensus 87 fQ~~nLv~r~----sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~a---------------Ler------------- 134 (258)
T COG3638 87 FQQFNLVPRL----SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA---------------LER------------- 134 (258)
T ss_pred eccCCccccc----HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHH---------------HHH-------------
Confidence 9998876654 34443221 11122222 2221111111 110
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 255 ~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
..+.+....|.+..+.+.+||+.+++..++.. ..-+.|+-++.-|+..+ +++.+++..+.... +.+.+..+|..|
T Consensus 135 --vgi~~~A~qra~~LSGGQQQRVaIARaL~Q~p-kiILADEPvasLDp~~a-~~Vm~~l~~in~~~-g~Tvi~nLH~vd 209 (258)
T COG3638 135 --VGILDKAYQRASTLSGGQQQRVAIARALVQQP-KIILADEPVASLDPESA-KKVMDILKDINQED-GITVIVNLHQVD 209 (258)
T ss_pred --cCcHHHHHHHhccCCcchhHHHHHHHHHhcCC-CEEecCCcccccChhhH-HHHHHHHHHHHHHc-CCEEEEEechHH
Confidence 01122223344556789999999999887652 12223444444465443 45667777776544 444548888888
Q ss_pred chhhhhh
Q 019061 335 LTSLLCI 341 (346)
Q Consensus 335 ~~~~~~~ 341 (346)
.+..+|=
T Consensus 210 lA~~Y~~ 216 (258)
T COG3638 210 LAKKYAD 216 (258)
T ss_pred HHHHHHh
Confidence 8777764
No 34
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.40 E-value=1.2e-12 Score=113.39 Aligned_cols=185 Identities=14% Similarity=0.113 Sum_probs=113.8
Q ss_pred HHHHHcCCeE-EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcccee------eecCCcccccccCCeeEEe
Q 019061 112 EQKKVVGAEV-VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV------SHTTRAPRAMEKDGVHYHF 184 (346)
Q Consensus 112 ~~~~~~g~~v-~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i------~~ttr~~~~~~~~g~~y~f 184 (346)
++.|.|+.-. .+.+.++.+.+|+++.|+|||||||||+++.|.....|+.|... ..........-+..+|.+|
T Consensus 6 ~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVF 85 (223)
T COG2884 6 NVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVF 85 (223)
T ss_pred hhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEe
Confidence 4556554332 34445567889999999999999999999999999999888332 1222222233345688999
Q ss_pred eChhHHHHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHH
Q 019061 185 TERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (346)
Q Consensus 185 ~s~~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~ 264 (346)
|+..++... ++.|+..+.-...|.+...+++....... .-.|.++..
T Consensus 86 QD~rLL~~~----tvyeNVA~pL~v~G~~~~~i~~rV~~~L~-----------------------------~VgL~~k~~ 132 (223)
T COG2884 86 QDFRLLPDR----TVYENVALPLRVIGKPPREIRRRVSEVLD-----------------------------LVGLKHKAR 132 (223)
T ss_pred eeccccccc----hHhhhhhhhhhccCCCHHHHHHHHHHHHH-----------------------------Hhccchhhh
Confidence 998876655 77888777777777776665543322100 113444555
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccc
Q 019061 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYP 333 (346)
Q Consensus 265 ~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~ 333 (346)
......+.+.+||+.++++-.... .--+.|+--+|-|++-+++ +..+++.+... +.+++...|+.
T Consensus 133 ~lP~~LSGGEQQRvaIARAiV~~P-~vLlADEPTGNLDp~~s~~-im~lfeeinr~--GtTVl~ATHd~ 197 (223)
T COG2884 133 ALPSQLSGGEQQRVAIARAIVNQP-AVLLADEPTGNLDPDLSWE-IMRLFEEINRL--GTTVLMATHDL 197 (223)
T ss_pred cCccccCchHHHHHHHHHHHccCC-CeEeecCCCCCCChHHHHH-HHHHHHHHhhc--CcEEEEEeccH
Confidence 555566788889999988776541 1111233333446655543 55566666432 34443445533
No 35
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=2.8e-12 Score=113.01 Aligned_cols=186 Identities=14% Similarity=0.122 Sum_probs=104.3
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccc----eeeecCCccc-----cc-ccCCeeEEeeC
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF----SVSHTTRAPR-----AM-EKDGVHYHFTE 186 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~----~i~~ttr~~~-----~~-~~~g~~y~f~s 186 (346)
||...++.+.+..+.++++++|+|||||||||++++|..+.....+. .+..-..... .. -+..++.+||.
T Consensus 17 Yg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred ECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 44444445556677899999999999999999999998876654321 2221111110 11 12347788999
Q ss_pred hhHHHHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 187 RSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 187 ~~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
+..|+. ...++..|.-.++|......+++.+.. ++.. .=+++..+||..-
T Consensus 97 PnPFp~-----SIydNVayG~r~~g~~~~~ldeiVe~s--------------Lk~A-----------aLWdEVKDrL~~s 146 (253)
T COG1117 97 PNPFPM-----SIYDNVAYGLRLHGIKDKELDEIVESS--------------LKKA-----------ALWDEVKDRLHKS 146 (253)
T ss_pred CCCCCc-----hHHHHHHHhHHhhccchHHHHHHHHHH--------------HHHh-----------HhHHHhHHHhhCC
Confidence 888873 556777776666665543333333210 0000 0046677777776
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchh
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTS 337 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~ 337 (346)
+...+++.+||+.++++..-. ..--+.|+.-...|+-.+ .+++++|..|. ...+++.+.|.+..++
T Consensus 147 a~~LSGGQQQRLcIARalAv~-PeVlLmDEPtSALDPIsT-~kIEeLi~eLk---~~yTIviVTHnmqQAa 212 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVK-PEVLLMDEPTSALDPIST-LKIEELITELK---KKYTIVIVTHNMQQAA 212 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcC-CcEEEecCcccccCchhH-HHHHHHHHHHH---hccEEEEEeCCHHHHH
Confidence 666778888888888755322 100011111111233222 34666666653 3455556666655444
No 36
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.39 E-value=6.4e-12 Score=112.07 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=112.4
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee----ecC-CcccccccCCeeEEeeChh
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS----HTT-RAPRAMEKDGVHYHFTERS 188 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~----~tt-r~~~~~~~~g~~y~f~s~~ 188 (346)
...||.-.+..+.++...+|++++|+|+||+||||++++|++..++..| .|. ..| .++......|.+|+++...
T Consensus 10 ~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G-~I~~~G~dit~~p~~~r~r~Gi~~VPegR~ 88 (237)
T COG0410 10 SAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG-RIIFDGEDITGLPPHERARLGIAYVPEGRR 88 (237)
T ss_pred eecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-eEEECCeecCCCCHHHHHhCCeEeCccccc
Confidence 3456665666667788889999999999999999999999999998888 443 223 2333344578999999999
Q ss_pred HHHHHHhccchhhhhhhhccccCCcHH--H-HHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHc
Q 019061 189 VMEKAIKDGKFLEFASVHGNLYGTSVE--A-VEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (346)
Q Consensus 189 ~~~~~~~~~~~~e~~~~~~~~yg~~~~--~-i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~ 265 (346)
.|+.+ ++.|+............. . +++..+ + +..|.+|.+.
T Consensus 89 iF~~L----TVeENL~~g~~~~~~~~~~~~~~e~v~~--------l------------------------FP~Lker~~~ 132 (237)
T COG0410 89 IFPRL----TVEENLLLGAYARRDKEAQERDLEEVYE--------L------------------------FPRLKERRNQ 132 (237)
T ss_pred chhhC----cHHHHHhhhhhcccccccccccHHHHHH--------H------------------------ChhHHHHhcC
Confidence 99988 888887654433221000 0 111111 1 2468889999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhc
Q 019061 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQ 319 (346)
Q Consensus 266 R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~ 319 (346)
++...+.+.+|.+..+++.+... ...+-++ .+ .+.+++.++|..+..
T Consensus 133 ~aG~LSGGEQQMLAiaRALm~~P------klLLLDEPs~GLaP-~iv~~I~~~i~~l~~ 184 (237)
T COG0410 133 RAGTLSGGEQQMLAIARALMSRP------KLLLLDEPSEGLAP-KIVEEIFEAIKELRK 184 (237)
T ss_pred cccCCChHHHHHHHHHHHHhcCC------CEEEecCCccCcCH-HHHHHHHHHHHHHHH
Confidence 98888999999999999888752 2333322 22 345677777777764
No 37
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.38 E-value=9.7e-14 Score=124.31 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=131.5
Q ss_pred HHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHH
Q 019061 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 111 ~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~ 190 (346)
+.+.|++|...+..+.+++..+|++++|+||||+||||+.++|++.+++..| .|.....+......+.++|.+....++
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G-~I~~~g~~~~~~~~~rIGyLPEERGLy 84 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG-EITWNGGPLSQEIKNRIGYLPEERGLY 84 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCc-eEEEcCcchhhhhhhhcccChhhhccC
Confidence 3567899999888888888999999999999999999999999999999888 666555444444445688998888888
Q ss_pred HHHHhccchhhhhhhhccccCCcHHHHHHHHHhC--CceEEEe---cHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHc
Q 019061 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAG--KRCILDI---DVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (346)
Q Consensus 191 ~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~--~~~iLD~---~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~ 265 (346)
+++ ++.+...|.+.+.|.+...++..+..- +.-+..- .++.+..-..++.+..+.++..|.+.+|||++++
T Consensus 85 ~k~----tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 85 PKM----TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred ccC----cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 887 778888888888888876655443321 0000000 1122222233444445566777888889999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHH
Q 019061 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308 (346)
Q Consensus 266 R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~ 308 (346)
.|.-+.+-+++.+..+++. + .+.++.+|.++.+.+
T Consensus 161 LDPVN~elLk~~I~~lk~~-------G-atIifSsH~Me~vEe 195 (300)
T COG4152 161 LDPVNVELLKDAIFELKEE-------G-ATIIFSSHRMEHVEE 195 (300)
T ss_pred CChhhHHHHHHHHHHHHhc-------C-CEEEEecchHHHHHH
Confidence 9988888887777655422 1 367888887777533
No 38
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=1.2e-12 Score=121.22 Aligned_cols=186 Identities=16% Similarity=0.144 Sum_probs=126.8
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCC-------cccccccCCeeEEe
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR-------APRAMEKDGVHYHF 184 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr-------~~~~~~~~g~~y~f 184 (346)
++.+..|..+=..+.++....|++++++|-||||||||+++|.++.+|+.|........ ..+.......+.+|
T Consensus 33 ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVF 112 (386)
T COG4175 33 EILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVF 112 (386)
T ss_pred HHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence 34567787776677778889999999999999999999999999999988833322111 11223345677889
Q ss_pred eChhHHHHHHhccchhhhhhhhccccCCcHHHHHHHHHhC-CceEEEe----cHHHHHHHHcCCCCeEEEEEcCCCHHHH
Q 019061 185 TERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAG-KRCILDI----DVQGARSVRASPLDAIFIFICPPSMEEL 259 (346)
Q Consensus 185 ~s~~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~-~~~iLD~----~~~~~~~l~~~~~~~~~ill~~p~~~~l 259 (346)
|++.+++.. +++++..|.-..-|.+++..++..... ..+-|+. .|..+..-.+++.-..+.|...|++..+
T Consensus 113 Q~FaLlPhr----tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLM 188 (386)
T COG4175 113 QSFALLPHR----TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLM 188 (386)
T ss_pred hhhccccch----hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEe
Confidence 999999887 889999888888888876544432221 1111111 1221111122222234567777878888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHH
Q 019061 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308 (346)
Q Consensus 260 ~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~ 308 (346)
+|.+++.+..-..+++.-+..++..+.. +.|+.+||++|+++
T Consensus 189 DEaFSALDPLIR~~mQdeLl~Lq~~l~K-------TIvFitHDLdEAlr 230 (386)
T COG4175 189 DEAFSALDPLIRTEMQDELLELQAKLKK-------TIVFITHDLDEALR 230 (386)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHHhCC-------eEEEEecCHHHHHh
Confidence 8888888766666777777666655543 78999999999875
No 39
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1.9e-13 Score=131.95 Aligned_cols=181 Identities=14% Similarity=0.179 Sum_probs=101.9
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~ 191 (346)
.+.++...++.+.++...+|++++|+||||||||||+++|++..++..| .+....+.. ......+++|+|++..+|+
T Consensus 13 ~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp 91 (351)
T PRK11432 13 TKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG-QIFIDGEDVTHRSIQQRDICMVFQSYALFP 91 (351)
T ss_pred EEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCcccCC
Confidence 3455554555556677889999999999999999999999999999888 443222111 1112356899999988777
Q ss_pred HHHhccchhhhhhhhccccCCcHHH----HHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 192 KAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~~~yg~~~~~----i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
.+ ++.++..+....++...+. +.+.++. +..-+++-.+..+..-++++....+.++..|++..+||++.+.
T Consensus 92 ~~----tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~L 167 (351)
T PRK11432 92 HM----SLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNL 167 (351)
T ss_pred CC----CHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 65 6666666543333433322 2222222 1111222222222222233333334455555556666666666
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHH
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEEC 306 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~ 306 (346)
|..+.+.+++.+.....+.. ...++++|+.+++
T Consensus 168 D~~~r~~l~~~l~~l~~~~g-------~tii~vTHd~~e~ 200 (351)
T PRK11432 168 DANLRRSMREKIRELQQQFN-------ITSLYVTHDQSEA 200 (351)
T ss_pred CHHHHHHHHHHHHHHHHhcC-------CEEEEEcCCHHHH
Confidence 65555555555544332211 2455555555554
No 40
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=2.3e-13 Score=131.75 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=107.3
Q ss_pred HHc-CCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHH
Q 019061 115 KVV-GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 115 ~~~-g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~ 191 (346)
+.+ +...+..+.+++..+|++++|+||||||||||+++|++..++..| .+....... ......+++|+||+..+|+
T Consensus 11 ~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp 89 (356)
T PRK11650 11 KSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG-EIWIGGRVVNELEPADRDIAMVFQNYALYP 89 (356)
T ss_pred EEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCccccC
Confidence 444 444455556677889999999999999999999999999999888 443222111 0112357899999988777
Q ss_pred HHHhccchhhhhhhhccccCCcHHH----HHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 192 KAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~~~yg~~~~~----i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
.+ ++.++..+....++.+... +.+.++. +..-+++-.+..+..-++++....+.++..|++..+||++.+.
T Consensus 90 ~~----tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~L 165 (356)
T PRK11650 90 HM----SVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165 (356)
T ss_pred CC----CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 65 6667666543333333322 2222222 2111222233322222334444445566677777777788777
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHH
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECY 307 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~ 307 (346)
|..+.+.+.+.+.....+.. ...++++|+++++.
T Consensus 166 D~~~r~~l~~~l~~l~~~~g-------~tii~vTHd~~ea~ 199 (356)
T PRK11650 166 DAKLRVQMRLEIQRLHRRLK-------TTSLYVTHDQVEAM 199 (356)
T ss_pred CHHHHHHHHHHHHHHHHhcC-------CEEEEEeCCHHHHH
Confidence 76666666666655432211 24666666666553
No 41
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.33 E-value=2.5e-13 Score=131.37 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=106.3
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~ 191 (346)
.+.++...+..+.+++..+|++++|+||||||||||+++|++..++..| .+....+.. ......+++|+|+...+|+
T Consensus 11 ~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp 89 (353)
T TIGR03265 11 RKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG-TIYQGGRDITRLPPQKRDYGIVFQSYALFP 89 (353)
T ss_pred EEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCcccCC
Confidence 3455554455556677789999999999999999999999999999888 443211111 0112356899999988887
Q ss_pred HHHhccchhhhhhhhccccCCcHH----HHHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 192 KAIKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~~~yg~~~~----~i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
.+ ++.++..+.....+.+.. .+++.++. +..-+++-.+..+..-++++....+.++..|++..+||++.+.
T Consensus 90 ~~----tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~L 165 (353)
T TIGR03265 90 NL----TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL 165 (353)
T ss_pred CC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 65 666666554333333322 23333322 2222333333333333333334444555566666667777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHH
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECY 307 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~ 307 (346)
|..+...+++.+.....+.. ...++++|+.+++.
T Consensus 166 D~~~r~~l~~~L~~l~~~~~-------~tvi~vTHd~~ea~ 199 (353)
T TIGR03265 166 DARVREHLRTEIRQLQRRLG-------VTTIMVTHDQEEAL 199 (353)
T ss_pred CHHHHHHHHHHHHHHHHhcC-------CEEEEEcCCHHHHH
Confidence 65555666665554432211 35666677766654
No 42
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.32 E-value=4.8e-12 Score=122.58 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=65.0
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc---c-----cccCCeeEEeeCh
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---A-----MEKDGVHYHFTER 187 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~---~-----~~~~g~~y~f~s~ 187 (346)
.+|...+..+.++.+.+|++++|+||||||||||+++|.+..++..| .+..-..... . ....+++|+|+..
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G-~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG-QIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 45656666667788889999999999999999999999999999888 4432111110 0 1135789999988
Q ss_pred hHHHHHHhccchhhhhhhhccccCCc
Q 019061 188 SVMEKAIKDGKFLEFASVHGNLYGTS 213 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~~yg~~ 213 (346)
.+|+.+ ++.++..+....++..
T Consensus 81 ~l~~~~----TV~eNi~~~~~~~~~~ 102 (363)
T TIGR01186 81 ALFPHM----TILQNTSLGPELLGWP 102 (363)
T ss_pred cCCCCC----CHHHHHHHHHHHcCCC
Confidence 777654 5666655543334443
No 43
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.32 E-value=3.2e-13 Score=131.42 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=106.2
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~ 191 (346)
.+.++...+..+.++...+|++++|+||||||||||+++|++..++..| .|....+.. ......+++|+|++..+|+
T Consensus 21 ~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp 99 (375)
T PRK09452 21 SKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG-RIMLDGQDITHVPAENRHVNTVFQSYALFP 99 (375)
T ss_pred EEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHCCEEEEecCcccCC
Confidence 3445544455556677789999999999999999999999999998888 443222111 1112356899999988877
Q ss_pred HHHhccchhhhhhhhccccCCcHHH----HHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 192 KAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~~~yg~~~~~----i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
.+ ++.++..+.-..++.+... +.+.++. +..-+++-.|..+..-++++....+.++..|++..+||++.+.
T Consensus 100 ~l----tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~L 175 (375)
T PRK09452 100 HM----TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSAL 175 (375)
T ss_pred CC----CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcC
Confidence 65 6666665543333333322 2222222 2222233233333222333333445555666666777777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHH
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECY 307 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~ 307 (346)
|..+.+.+++.+..+..+.. ...++++|+.+++.
T Consensus 176 D~~~r~~l~~~L~~l~~~~g-------~tiI~vTHd~~ea~ 209 (375)
T PRK09452 176 DYKLRKQMQNELKALQRKLG-------ITFVFVTHDQEEAL 209 (375)
T ss_pred CHHHHHHHHHHHHHHHHhcC-------CEEEEEeCCHHHHH
Confidence 65555666666655433211 24566666666543
No 44
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.31 E-value=1.5e-11 Score=112.74 Aligned_cols=183 Identities=17% Similarity=0.127 Sum_probs=106.6
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc---cccc-CCeeEEeeChhHHH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEK-DGVHYHFTERSVME 191 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~-~g~~y~f~s~~~~~ 191 (346)
.|+...+..+.++...+|++++|+||||||||||+++|.+.++|..| .|..-.+... ..++ ...+|++|+.....
T Consensus 11 ~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G-~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 11 GYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred EECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 45556777777788889999999999999999999999999999888 5543222211 1111 34788888753322
Q ss_pred HHHhccchhhhhhhhc-cccCC-cHHH---HHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 192 KAIKDGKFLEFASVHG-NLYGT-SVEA---VEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~-~~yg~-~~~~---i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
. +...+++..+++.. ..++. +.++ +.++++.-. .+.+.+|.
T Consensus 90 ~-~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~------------------------------~~~la~r~--- 135 (258)
T COG1120 90 G-LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLG------------------------------LEHLADRP--- 135 (258)
T ss_pred C-cEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhC------------------------------cHHHhcCc---
Confidence 2 22334444444432 22331 2221 222221100 11222221
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhhh
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLCI 341 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~~ 341 (346)
-.+.+++.+||+-.+++..+. ...++-++ |+..- -++.+++.++.... +..++.++|+.++++.+|=
T Consensus 136 ~~~LSGGerQrv~iArALaQ~------~~iLLLDEPTs~LDi~~Q-~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 136 VDELSGGERQRVLIARALAQE------TPILLLDEPTSHLDIAHQ-IEVLELLRDLNREK-GLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred ccccChhHHHHHHHHHHHhcC------CCEEEeCCCccccCHHHH-HHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCC
Confidence 133468999999998877654 22333332 33332 24666777776543 4555588898888887773
No 45
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.31 E-value=1.6e-12 Score=116.69 Aligned_cols=197 Identities=18% Similarity=0.130 Sum_probs=120.9
Q ss_pred HHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeee----cCCcccccccCCeeEEeeC
Q 019061 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH----TTRAPRAMEKDGVHYHFTE 186 (346)
Q Consensus 111 ~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~----ttr~~~~~~~~g~~y~f~s 186 (346)
+++.+++|.-+...+.+++..+|++++|+||||+||||+.|.|.+.++|+.|..+.. |.-++......|....||.
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence 467788998888888888999999999999999999999999999999998844322 2222333344678788999
Q ss_pred hhHHHHHHhccchhhhhhhhccccC-------CcH--HHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHH
Q 019061 187 RSVMEKAIKDGKFLEFASVHGNLYG-------TSV--EAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSME 257 (346)
Q Consensus 187 ~~~~~~~~~~~~~~e~~~~~~~~yg-------~~~--~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~ 257 (346)
...|..+ +++|+.......+. .+. ..-++..+. ....+.. -
T Consensus 88 ~rlF~~l----TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~-----------A~~~Le~---------------v 137 (250)
T COG0411 88 TRLFPGL----TVLENVAVGAHARLGLSGLLGRPRARKEEREARER-----------ARELLEF---------------V 137 (250)
T ss_pred ccccCCC----cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH-----------HHHHHHH---------------c
Confidence 8888887 77887655433211 100 000000000 0000000 0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchh
Q 019061 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTS 337 (346)
Q Consensus 258 ~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~ 337 (346)
.|.++-..+..+.+.+.+++++.+++..... ..-+.|+..+--+++++ .++.++|..+.... +..+..+.|+++.++
T Consensus 138 gL~~~a~~~A~~LsyG~qR~LEIArALa~~P-~lLLLDEPaAGln~~e~-~~l~~~i~~i~~~~-g~tillIEHdM~~Vm 214 (250)
T COG0411 138 GLGELADRPAGNLSYGQQRRLEIARALATQP-KLLLLDEPAAGLNPEET-EELAELIRELRDRG-GVTILLIEHDMKLVM 214 (250)
T ss_pred CCchhhcchhhcCChhHhHHHHHHHHHhcCC-CEEEecCccCCCCHHHH-HHHHHHHHHHHhcC-CcEEEEEEeccHHHh
Confidence 1111222223344678889999998776541 12234555555577775 45677777775422 234446777777766
Q ss_pred hhh
Q 019061 338 LLC 340 (346)
Q Consensus 338 ~~~ 340 (346)
-+|
T Consensus 215 ~l~ 217 (250)
T COG0411 215 GLA 217 (250)
T ss_pred hhc
Confidence 665
No 46
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=4.9e-13 Score=130.29 Aligned_cols=183 Identities=12% Similarity=0.075 Sum_probs=108.6
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~ 191 (346)
.+.++...+..+.++...+|++++|+||||||||||+++|++..++..| .+....... ......+++|+|++..+|+
T Consensus 26 ~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp 104 (377)
T PRK11607 26 TKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG-QIMLDGVDLSHVPPYQRPINMMFQSYALFP 104 (377)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCCccCC
Confidence 3455554455556677789999999999999999999999999998888 443211111 1112356899999988877
Q ss_pred HHHhccchhhhhhhhccccCCcHHH----HHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 192 KAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~~~yg~~~~~----i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
.+ ++.++..+.....+.+... +.+.++. +..-+++-.+..+..-++++....+.++..|++..|||++.+.
T Consensus 105 ~l----tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~L 180 (377)
T PRK11607 105 HM----TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180 (377)
T ss_pred CC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 65 6666665543222223222 2222221 2222233333333333344444445566666677777888887
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHH
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~ 308 (346)
|....+.+++.+..+..+. + ...++++|+.+++..
T Consensus 181 D~~~r~~l~~~l~~l~~~~------g-~tii~vTHd~~ea~~ 215 (377)
T PRK11607 181 DKKLRDRMQLEVVDILERV------G-VTCVMVTHDQEEAMT 215 (377)
T ss_pred CHHHHHHHHHHHHHHHHhc------C-CEEEEEcCCHHHHHH
Confidence 7655666665555443221 1 356777777766543
No 47
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.29 E-value=1.3e-11 Score=117.31 Aligned_cols=98 Identities=20% Similarity=0.155 Sum_probs=68.4
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc---ccccCCeeEEeeChh
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERS 188 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~g~~y~f~s~~ 188 (346)
++.+.|+...+..+.++.+.+|++++|+||||||||||+++|++..++..| .+........ ......++|+++...
T Consensus 12 ~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G-~v~i~G~~~~~~~~~~~~~ig~v~q~~~ 90 (306)
T PRK13537 12 NVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG-SISLCGEPVPSRARHARQRVGVVPQFDN 90 (306)
T ss_pred eEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEecccchHHHHhcEEEEeccCc
Confidence 344566655666667788889999999999999999999999999998888 4432211111 112346889998876
Q ss_pred HHHHHHhccchhhhhhhhccccCCcH
Q 019061 189 VMEKAIKDGKFLEFASVHGNLYGTSV 214 (346)
Q Consensus 189 ~~~~~~~~~~~~e~~~~~~~~yg~~~ 214 (346)
++..+ ++.++..+.+..|+...
T Consensus 91 ~~~~~----tv~e~l~~~~~~~~~~~ 112 (306)
T PRK13537 91 LDPDF----TVRENLLVFGRYFGLSA 112 (306)
T ss_pred CCCCC----cHHHHHHHHHHHcCCCH
Confidence 65544 66677666555666543
No 48
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.29 E-value=7.3e-13 Score=128.41 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=108.8
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCc--cceeeecCCcc--cccccCCeeEEeeChhH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF--GFSVSHTTRAP--RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~--g~~i~~ttr~~--~~~~~~g~~y~f~s~~~ 189 (346)
.+.|+...+..+.++.+.+|++++|+||||||||||+++|++..++.. | .+..-.... .......++|+|+...+
T Consensus 12 ~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G-~i~~~g~~~~~~~~~~r~ig~vfQ~~~l 90 (362)
T TIGR03258 12 RVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG-RIAIADRDLTHAPPHKRGLALLFQNYAL 90 (362)
T ss_pred EEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCE-EEEECCEECCCCCHHHCCEEEEECCccc
Confidence 345555555566667788999999999999999999999999999888 8 443221111 01123468999999887
Q ss_pred HHHHHhccchhhhhhhhccccCCcHHH----HHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHH
Q 019061 190 MEKAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (346)
Q Consensus 190 ~~~~~~~~~~~e~~~~~~~~yg~~~~~----i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~ 264 (346)
|+.+ ++.++..+....++.+... +.+.++. +..-.++-.+..+..-++++....+.++..|++..+||++.
T Consensus 91 ~p~~----tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s 166 (362)
T TIGR03258 91 FPHL----KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLS 166 (362)
T ss_pred CCCC----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 7665 6666666544333433322 2223322 22222333333333333344444455666666777777787
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHH
Q 019061 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECY 307 (346)
Q Consensus 265 ~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~ 307 (346)
+.|..+...+++.+..+.++.. -...++++|+.+++.
T Consensus 167 ~LD~~~r~~l~~~l~~l~~~~~------g~til~vTHd~~ea~ 203 (362)
T TIGR03258 167 ALDANIRANMREEIAALHEELP------ELTILCVTHDQDDAL 203 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHhCC------CCEEEEEeCCHHHHH
Confidence 7776556666666654432210 135667777776654
No 49
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.28 E-value=1.2e-11 Score=117.19 Aligned_cols=92 Identities=21% Similarity=0.127 Sum_probs=61.4
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhHHHHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~~~~~ 193 (346)
|+...+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+....... ........+|+++...++..+
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG-TARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 4445556666677889999999999999999999999999998888 443211111 111134578888876655543
Q ss_pred HhccchhhhhhhhccccCCc
Q 019061 194 IKDGKFLEFASVHGNLYGTS 213 (346)
Q Consensus 194 ~~~~~~~e~~~~~~~~yg~~ 213 (346)
+..++..+....++..
T Consensus 82 ----tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 82 ----TGRENLEMMGRLYGLP 97 (302)
T ss_pred ----cHHHHHHHHHHHcCCC
Confidence 4555555544445443
No 50
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.27 E-value=1.3e-11 Score=107.71 Aligned_cols=173 Identities=17% Similarity=0.104 Sum_probs=107.5
Q ss_pred HHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee---ecCCcc-cccccCCeeEEeeC
Q 019061 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS---HTTRAP-RAMEKDGVHYHFTE 186 (346)
Q Consensus 111 ~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~---~ttr~~-~~~~~~g~~y~f~s 186 (346)
+++.|+|+-+.+..+.+++..+|++++|+||||+||||...++++..++..|...- ..|..+ -....-|++|.+|.
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE 87 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQE 87 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccccccc
Confidence 46789999999988888889999999999999999999999999999998884332 222222 22234689999999
Q ss_pred hhHHHHHHhccchhhhhhhhccccCCcHHHHHHH--HHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHH
Q 019061 187 RSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAV--ADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (346)
Q Consensus 187 ~~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~--~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~ 264 (346)
.+.|..+ ++.++....-..........+.. ++. .+.. .-...+.
T Consensus 88 ~SIFr~L----tV~dNi~~vlE~~~~d~~~~~~~~~l~~-----------LL~e-------------------f~i~hlr 133 (243)
T COG1137 88 ASIFRKL----TVEDNIMAVLEIREKDLKKAERKEELDA-----------LLEE-------------------FHITHLR 133 (243)
T ss_pred chHhhcC----cHHHHHHHHHhhhhcchhHHHHHHHHHH-----------HHHH-------------------hchHHHh
Confidence 9999887 55555443322222111110000 000 0000 0001222
Q ss_pred -cCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhc
Q 019061 265 -ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQ 319 (346)
Q Consensus 265 -~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~ 319 (346)
..+...+.+.++|++.+++.... +.--++|+-++.-|+-. +.+++++|..|..
T Consensus 134 ~~~a~sLSGGERRR~EIARaLa~~-P~fiLLDEPFAGVDPia-V~dIq~iI~~L~~ 187 (243)
T COG1137 134 DSKAYSLSGGERRRVEIARALAAN-PKFILLDEPFAGVDPIA-VIDIQRIIKHLKD 187 (243)
T ss_pred cCcccccccchHHHHHHHHHHhcC-CCEEEecCCccCCCchh-HHHHHHHHHHHHh
Confidence 22344577888899888866543 11122455555556533 4668888888754
No 51
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.2e-12 Score=127.30 Aligned_cols=180 Identities=20% Similarity=0.175 Sum_probs=101.8
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhHHHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~~~~ 192 (346)
+.|+...+..+.++++.+|++++|+||||||||||+++|++..++..| .+........ ......++|+|+...+|+.
T Consensus 11 ~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G-~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~ 89 (369)
T PRK11000 11 KAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG-DLFIGEKRMNDVPPAERGVGMVFQSYALYPH 89 (369)
T ss_pred EEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHhHCCEEEEeCCcccCCC
Confidence 445555555566677889999999999999999999999999988888 4432111110 1112468899998776654
Q ss_pred HHhccchhhhhhhhccccCCcHH----HHHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 193 AIKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 193 ~~~~~~~~e~~~~~~~~yg~~~~----~i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
+ ++.++..+....++.... .+.+.++. +..-.++-.+..+..-++++....+.++..|++..+||++.+.|
T Consensus 90 ~----tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD 165 (369)
T PRK11000 90 L----SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (369)
T ss_pred C----CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 4 555555443222232222 22222222 11112222232222223333444455666666777777787777
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHH
Q 019061 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEEC 306 (346)
Q Consensus 268 ~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~ 306 (346)
..+.+.+.+.+..+..+.. ...++.+|+++++
T Consensus 166 ~~~~~~l~~~L~~l~~~~g-------~tvI~vTHd~~~~ 197 (369)
T PRK11000 166 AALRVQMRIEISRLHKRLG-------RTMIYVTHDQVEA 197 (369)
T ss_pred HHHHHHHHHHHHHHHHHhC-------CEEEEEeCCHHHH
Confidence 6666666666655432211 2455555555543
No 52
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.26 E-value=1.4e-12 Score=126.94 Aligned_cols=90 Identities=20% Similarity=0.128 Sum_probs=66.4
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCC----c-----cc---ccccCC
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR----A-----PR---AMEKDG 179 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr----~-----~~---~~~~~g 179 (346)
++.+.+|......+.+++..+|++++|+||||||||||+++|.+.+++..| .+..... . .. .....+
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G-~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRG-SVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEECCEecccccccCCHHHHHHHhcCC
Confidence 455789988888888888999999999999999999999999999999888 4432111 1 00 111246
Q ss_pred eeEEeeChhHHHHHHhccchhhhhhhh
Q 019061 180 VHYHFTERSVMEKAIKDGKFLEFASVH 206 (346)
Q Consensus 180 ~~y~f~s~~~~~~~~~~~~~~e~~~~~ 206 (346)
.+|+|+...+++.+ ++.++..+.
T Consensus 108 i~~vfQ~~~l~p~~----Tv~eNi~~~ 130 (382)
T TIGR03415 108 VSMVFQKFALMPWL----TVEENVAFG 130 (382)
T ss_pred EEEEECCCcCCCCC----cHHHHHHHH
Confidence 89999988776643 556665544
No 53
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.26 E-value=7.1e-13 Score=119.46 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=50.3
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--------ccccCCeeEEeeChhHHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHFTERSVME 191 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~g~~y~f~s~~~~~ 191 (346)
..+..+.++...+|++++|+||||||||||+++|++.+++..| .+........ .......+|+++....+.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG-EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce-eEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 3455666677889999999999999999999999999988888 4432211110 011245788888765544
No 54
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.25 E-value=1.9e-11 Score=117.65 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=67.5
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChh
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERS 188 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~ 188 (346)
++.+.|+...+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+....... ........+|+|+...
T Consensus 46 nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G-~i~i~G~~~~~~~~~~~~~ig~v~q~~~ 124 (340)
T PRK13536 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAG-KITVLGVPVPARARLARARIGVVPQFDN 124 (340)
T ss_pred EEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce-EEEECCEECCcchHHHhccEEEEeCCcc
Confidence 445667766666777788889999999999999999999999999999888 443222111 1112346889998866
Q ss_pred HHHHHHhccchhhhhhhhccccCCc
Q 019061 189 VMEKAIKDGKFLEFASVHGNLYGTS 213 (346)
Q Consensus 189 ~~~~~~~~~~~~e~~~~~~~~yg~~ 213 (346)
++..+ ++.++..+.+..|+..
T Consensus 125 ~~~~~----tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 125 LDLEF----TVRENLLVFGRYFGMS 145 (340)
T ss_pred CCCCC----cHHHHHHHHHHHcCCC
Confidence 65443 5566665555455543
No 55
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=6e-11 Score=110.63 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=59.2
Q ss_pred HHHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cc---cccCCee
Q 019061 110 VREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RA---MEKDGVH 181 (346)
Q Consensus 110 ~~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~---~~~~g~~ 181 (346)
..++.+.++...+..+.++...+|++++|+||||||||||+++|.+.+++..| .+....... .. ......+
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G-~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG-KVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccChhhhhhhhcCcEE
Confidence 34667888888777777788889999999999999999999999999988888 443211111 00 1124578
Q ss_pred EEeeChhHHH
Q 019061 182 YHFTERSVME 191 (346)
Q Consensus 182 y~f~s~~~~~ 191 (346)
|+++...++.
T Consensus 106 ~v~q~~~~~~ 115 (269)
T cd03294 106 MVFQSFALLP 115 (269)
T ss_pred EEecCcccCC
Confidence 8888765554
No 56
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=4.1e-12 Score=110.50 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=109.1
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhh
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~ 205 (346)
.+..+.+|+.++++||||||||||+|.+++...|..| .+....|.... .-...+.+||...+++.+ +.+++..|
T Consensus 24 vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G-~i~l~~r~i~g-PgaergvVFQ~~~LlPWl----~~~dNvaf 97 (259)
T COG4525 24 VSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG-SIQLNGRRIEG-PGAERGVVFQNEALLPWL----NVIDNVAF 97 (259)
T ss_pred cceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccc-eEEECCEeccC-CCccceeEeccCccchhh----HHHHHHHH
Confidence 3455679999999999999999999999999999888 55443333221 112356789999999987 78888888
Q ss_pred hccccCCcHHHHHHHHHhC-CceEEE-ecH---HHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHH
Q 019061 206 HGNLYGTSVEAVEAVADAG-KRCILD-IDV---QGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (346)
Q Consensus 206 ~~~~yg~~~~~i~~~~~~~-~~~iLD-~~~---~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~ 280 (346)
.-.+.|..++.-.+....- ..+-|. .+- ..+..-++++.-....+.+.|.+..++|++.+.+..+.+.++..+-.
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH
Confidence 7777888776543332210 001000 000 00000122223344567778888888888888876677777776655
Q ss_pred HHHHHHhccCCCCceEEEcCCCHHHHH
Q 019061 281 AKEEIKQGKSSGIFDHILYNDKLEECY 307 (346)
Q Consensus 281 ~~~~i~~~~~~~~~~~Vi~n~~le~~~ 307 (346)
+..+-. ....+.+|+++++.
T Consensus 178 lw~~tg-------k~~lliTH~ieEAl 197 (259)
T COG4525 178 LWQETG-------KQVLLITHDIEEAL 197 (259)
T ss_pred HHHHhC-------CeEEEEeccHHHHH
Confidence 543321 24667889999874
No 57
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=2.5e-11 Score=112.45 Aligned_cols=160 Identities=15% Similarity=0.064 Sum_probs=93.3
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeec---CCc---ccccccCCeeEEeeChhHHHHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT---TRA---PRAMEKDGVHYHFTERSVMEKAI 194 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~t---tr~---~~~~~~~g~~y~f~s~~~~~~~~ 194 (346)
....+.++++.+|.+++++|.||+|||||++++..+..|..|...... +.. .....+..++++||.+.++...
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr- 98 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR- 98 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc-
Confidence 344446678889999999999999999999999999999888444322 111 1111234588999998887655
Q ss_pred hccchhhhhhhhccccCCcHHHHHHHHHhCC-ce----EEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCC
Q 019061 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGK-RC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (346)
Q Consensus 195 ~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~-~~----iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~ 269 (346)
++.++..|.-.+-+.+++.+++....-. .+ -.|..|.++..-++++..+.+.+...|....+||..++.|..
T Consensus 99 ---TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~ 175 (339)
T COG1135 99 ---TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175 (339)
T ss_pred ---hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChH
Confidence 7777777777777777666554332210 00 011122222222233333334444444444455555555555
Q ss_pred CHHHHHHHHHHHHHH
Q 019061 270 TEDQILKRLRNAKEE 284 (346)
Q Consensus 270 ~~e~i~~Rl~~~~~~ 284 (346)
+...+.+.+...+++
T Consensus 176 TT~sIL~LL~~In~~ 190 (339)
T COG1135 176 TTQSILELLKDINRE 190 (339)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444454444444433
No 58
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=2.9e-11 Score=108.62 Aligned_cols=188 Identities=16% Similarity=0.102 Sum_probs=98.1
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhHHHHH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~~~~~ 193 (346)
.++...+..+.+++..+|++++|+||||||||||+++|.+..++..| .+........ .......+|+++....+...
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~ 87 (213)
T cd03259 9 TYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG-EILIDGRDVTGVPPERRNIGMVFQDYALFPHL 87 (213)
T ss_pred EeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcCcCchhhccEEEEcCchhhccCC
Confidence 34444455556677889999999999999999999999999988888 4432211110 01124578888876554432
Q ss_pred HhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHH
Q 019061 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (346)
Q Consensus 194 ~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~ 273 (346)
++.++..+....++.......+.... .+... .+.+.+.......+.+
T Consensus 88 ----tv~~~l~~~~~~~~~~~~~~~~~~~~--------------~l~~~---------------~l~~~~~~~~~~LSgG 134 (213)
T cd03259 88 ----TVAENIAFGLKLRGVPKAEIRARVRE--------------LLELV---------------GLEGLLNRYPHELSGG 134 (213)
T ss_pred ----cHHHHHHhHHHHcCCCHHHHHHHHHH--------------HHHHc---------------CChhhhhcChhhCCHH
Confidence 44444433221222211111110000 00000 0011111122234688
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 274 i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
.++|+..++..+... ..-++|+....-|.+. ...+.+++..+... .+..++++.|+++....+|
T Consensus 135 ~~qrl~la~al~~~p-~~lllDEPt~~LD~~~-~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~ 198 (213)
T cd03259 135 QQQRVALARALAREP-SLLLLDEPLSALDAKL-REELREELKELQRE-LGITTIYVTHDQEEALALA 198 (213)
T ss_pred HHHHHHHHHHHhcCC-CEEEEcCCcccCCHHH-HHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhc
Confidence 899999888766541 1111222223334433 45666777666432 2344546777766554443
No 59
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.25 E-value=8.9e-13 Score=117.83 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=96.1
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-cccccCCeeEEeeChhH-HHHHHhcc
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-RAMEKDGVHYHFTERSV-MEKAIKDG 197 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-~~~~~~g~~y~f~s~~~-~~~~~~~~ 197 (346)
..+..+.++...+|++++|+||||||||||+++|++..++..| .+....... ........+|+|+.... +...
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~---- 87 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG-SILLNGKPIKAKERRKSIGYVMQDVDYQLFTD---- 87 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEhhhHHhhcceEEEecChhhhhhhc----
Confidence 3445555677789999999999999999999999999998888 443222111 11122457899887532 2222
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
++.++..+....++...+.+.+.++. .. +.+.+..+....+.+.++|
T Consensus 88 tv~e~l~~~~~~~~~~~~~~~~~l~~------------------~~---------------l~~~~~~~~~~LS~G~~qr 134 (205)
T cd03226 88 SVREELLLGLKELDAGNEQAETVLKD------------------LD---------------LYALKERHPLSLSGGQKQR 134 (205)
T ss_pred cHHHHHhhhhhhcCccHHHHHHHHHH------------------cC---------------CchhcCCCchhCCHHHHHH
Confidence 44555433221122111122222211 00 0011111222346788999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
+..+++.+... ..-++|+....-|.+. .+.+.+++..+.. .+..++.+.|+++....+|
T Consensus 135 v~laral~~~p-~llllDEPt~~LD~~~-~~~l~~~l~~~~~--~~~tii~~sH~~~~~~~~~ 193 (205)
T cd03226 135 LAIAAALLSGK-DLLIFDEPTSGLDYKN-MERVGELIRELAA--QGKAVIVITHDYEFLAKVC 193 (205)
T ss_pred HHHHHHHHhCC-CEEEEeCCCccCCHHH-HHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhC
Confidence 99888776541 1111233333335433 4566677766643 2444546777766554443
No 60
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.24 E-value=1.6e-12 Score=125.76 Aligned_cols=181 Identities=16% Similarity=0.186 Sum_probs=98.5
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~~ 192 (346)
+.++...+..+.+++..+|++++|+||||||||||+++|++..++..| .+....... ........+|+|++..+|+.
T Consensus 10 ~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~ 88 (353)
T PRK10851 10 KSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDVSRLHARDRKVGFVFQHYALFRH 88 (353)
T ss_pred EEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHCCEEEEecCcccCCC
Confidence 344544455556677889999999999999999999999999998888 443221111 01122468899999877765
Q ss_pred HHhccchhhhhhhhcccc----CCcHH----HHHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHH
Q 019061 193 AIKDGKFLEFASVHGNLY----GTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (346)
Q Consensus 193 ~~~~~~~~e~~~~~~~~y----g~~~~----~i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL 263 (346)
+ ++.++..+....+ +.... .+.+.++. +..-.++-.+..+..-++++......++..|+...+||++
T Consensus 89 ~----tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~ 164 (353)
T PRK10851 89 M----TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPF 164 (353)
T ss_pred C----cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4 5555555432221 22222 22222222 1111122222222222233333344455555566666667
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHH
Q 019061 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECY 307 (346)
Q Consensus 264 ~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~ 307 (346)
.+.|..+.+.+++.+..+..+.. ...++++|+++++.
T Consensus 165 s~LD~~~r~~l~~~L~~l~~~~g-------~tii~vTHd~~ea~ 201 (353)
T PRK10851 165 GALDAQVRKELRRWLRQLHEELK-------FTSVFVTHDQEEAM 201 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcC-------CEEEEEeCCHHHHH
Confidence 66665555555555544332211 24555556655543
No 61
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.24 E-value=1.3e-12 Score=112.34 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=96.5
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcccee-----eecCCcccccccCCeeEEeeChhHHHHHHhccchhhh
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV-----SHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i-----~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~ 202 (346)
.....|++++++||||+|||||+|.+++...|..| .+ .||.+++... .++..||..++|..+ ++.++
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G-~i~i~g~d~t~~~P~~R---PVSmlFQEnNLFaHL----tV~qN 91 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG-EILINGVDHTASPPAER---PVSMLFQENNLFAHL----TVAQN 91 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCc-eEEEcCeecCcCCcccC---Chhhhhhccccchhh----hhhhh
Confidence 44678999999999999999999999999998888 44 2555554332 356789999998876 44544
Q ss_pred hhhhccc-cCCc---HHHHHHHHH-hCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 203 ASVHGNL-YGTS---VEAVEAVAD-AGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 203 ~~~~~~~-yg~~---~~~i~~~~~-~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
.-..-+- .... .+.++.+.. .|..-.++--|..+..-++++....++|+..-+...++|++...|.....++...
T Consensus 92 igLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~L 171 (231)
T COG3840 92 IGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171 (231)
T ss_pred hcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHH
Confidence 3221110 1111 222333222 2221111111111111122223334556666566777778877776556666655
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHH
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~ 308 (346)
+.....+- ..+.++++|.++++..
T Consensus 172 v~~l~~E~-------~~TllmVTH~~~Da~~ 195 (231)
T COG3840 172 VSQLCDER-------KMTLLMVTHHPEDAAR 195 (231)
T ss_pred HHHHHHhh-------CCEEEEEeCCHHHHHH
Confidence 55444332 2467788888877644
No 62
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.23 E-value=4.2e-11 Score=115.35 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=57.5
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----c--ccccCCeeEEeeChhHHHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----R--AMEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~--~~~~~g~~y~f~s~~~~~~~ 193 (346)
.++.+.++++.+|++++|+||||||||||+++|.+..++..| .+....... . ......++|+|+...++...
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G-~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG-SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 456666778889999999999999999999999999999888 443211111 1 01234689999987766543
Q ss_pred Hhccchhhhhhhh
Q 019061 194 IKDGKFLEFASVH 206 (346)
Q Consensus 194 ~~~~~~~e~~~~~ 206 (346)
++.++..+.
T Consensus 98 ----tv~eni~~~ 106 (343)
T TIGR02314 98 ----TVFGNVALP 106 (343)
T ss_pred ----cHHHHHHHH
Confidence 555555543
No 63
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=2.4e-12 Score=115.42 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=51.7
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~ 191 (346)
++...+..+.++...+|++++|+||||||||||+++|++..++..| .+..-............+|+++....+.
T Consensus 10 ~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~i~~~~q~~~~~~ 83 (210)
T cd03269 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSG-EVLFDGKPLDIAARNRIGYLPEERGLYP 83 (210)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCCchhHHHHccEEEeccCCcCCc
Confidence 4434455556677889999999999999999999999999988888 4433222211112345788888765544
No 64
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=4.3e-11 Score=117.35 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=64.3
Q ss_pred HHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----c---ccccCCeeE
Q 019061 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----R---AMEKDGVHY 182 (346)
Q Consensus 111 ~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~---~~~~~g~~y 182 (346)
..+.+.+|..+...+.++.+.+|++++|+||||||||||+++|.+..++..| .+....... . .......+|
T Consensus 32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG-~I~i~G~~i~~~~~~~l~~~~~~~igy 110 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG-QVLIDGVDIAKISDAELREVRRKKIAM 110 (400)
T ss_pred HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC-EEEECCEECCcCCHHHHHHHHhCCEEE
Confidence 3456778877666667788889999999999999999999999999999888 443222111 0 011246889
Q ss_pred EeeChhHHHHHHhccchhhhhhhh
Q 019061 183 HFTERSVMEKAIKDGKFLEFASVH 206 (346)
Q Consensus 183 ~f~s~~~~~~~~~~~~~~e~~~~~ 206 (346)
+|+...+|+.+ ++.++..+.
T Consensus 111 v~Q~~~l~~~~----Tv~enl~~~ 130 (400)
T PRK10070 111 VFQSFALMPHM----TVLDNTAFG 130 (400)
T ss_pred EECCCcCCCCC----CHHHHHHHH
Confidence 99987666543 555555443
No 65
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=9.8e-11 Score=105.76 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=50.1
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~ 191 (346)
..+..+.++.+.+|++++|+||||||||||+++|++..++..| .+........ ......+|+++....+.
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~-~~~~~i~~v~q~~~~~~ 86 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG-EVLVDGEPVT-GPGPDRGYVFQQDALLP 86 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECc-cccCcEEEEeccccccc
Confidence 4455666677889999999999999999999999999888888 4433221111 11245788888765443
No 66
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.23 E-value=2.6e-11 Score=108.95 Aligned_cols=65 Identities=22% Similarity=0.138 Sum_probs=47.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-c---c-cccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-R---A-MEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-~---~-~~~~g~~y~f~s~ 187 (346)
+..+.+++..+|++++|+|+||||||||+++|++...+..| .|..-..+. . . .....+.++||++
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G-~I~~~G~~~~~~~~~~~~~~~VQmVFQDp 91 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG-SILLDGKPLAPKKRAKAFYRPVQMVFQDP 91 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc-eEEECCcccCccccchhhccceeEEecCC
Confidence 34455677889999999999999999999999999999999 554322111 1 1 1234566788875
No 67
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.22 E-value=1.2e-10 Score=105.20 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=52.2
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeChhHH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~~~~ 190 (346)
.++...+..+.++++.+|++++|+||||||||||+++|.+..++..| .+..-... .........+|+|+....+
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (222)
T cd03224 9 GYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG-SIRFDGRDITGLPPHERARAGIGYVPEGRRIF 87 (222)
T ss_pred ecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcCCCCHHHHHhcCeEEeccccccC
Confidence 34434455556677889999999999999999999999999988888 44321111 1111124578888876555
Q ss_pred HH
Q 019061 191 EK 192 (346)
Q Consensus 191 ~~ 192 (346)
..
T Consensus 88 ~~ 89 (222)
T cd03224 88 PE 89 (222)
T ss_pred CC
Confidence 43
No 68
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=4.6e-12 Score=115.61 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=52.3
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-------ccccCCeeEEeeChh
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERS 188 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~g~~y~f~s~~ 188 (346)
.++...+..+.++++.+|++++|+||||||||||+++|++..++..| .+........ ......++|+|+...
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~ 87 (235)
T cd03261 9 SFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG-EVLIDGEDISGLSEAELYRLRRRMGMLFQSGA 87 (235)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccChhhHHHHhcceEEEccCcc
Confidence 34444455556677889999999999999999999999999988888 4432111110 112345789988765
Q ss_pred HHH
Q 019061 189 VME 191 (346)
Q Consensus 189 ~~~ 191 (346)
.+.
T Consensus 88 ~~~ 90 (235)
T cd03261 88 LFD 90 (235)
T ss_pred cCC
Confidence 554
No 69
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.22 E-value=2.1e-12 Score=117.81 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=52.3
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeChhHH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~~~ 190 (346)
.++...+..+.++...+|++++|+||||||||||+++|++.+++..| .+..-.... ......+.+|+|+....+
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 87 (236)
T cd03219 9 RFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG-SVLFDGEDITGLPPHEIARLGIGRTFQIPRLF 87 (236)
T ss_pred EECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-eEEECCEECCCCCHHHHHhcCEEEEecccccc
Confidence 34434455556677889999999999999999999999999988888 443211111 111124578888876655
Q ss_pred HH
Q 019061 191 EK 192 (346)
Q Consensus 191 ~~ 192 (346)
..
T Consensus 88 ~~ 89 (236)
T cd03219 88 PE 89 (236)
T ss_pred cC
Confidence 43
No 70
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.22 E-value=3.7e-12 Score=115.28 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=50.6
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~ 191 (346)
++...+....++...+|++++|+||||+|||||++.|++.+++..| .+...............+|.|+....+.
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~~~~~~~~~~~~~~~q~~~~~~ 83 (223)
T TIGR03740 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG-EIIFDGHPWTRKDLHKIGSLIESPPLYE 83 (223)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEeccccccccEEEEcCCCCccc
Confidence 3334455555677789999999999999999999999999988888 4432221111111235778887655443
No 71
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.21 E-value=3e-11 Score=114.52 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=64.6
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhHHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~~~ 191 (346)
+.++...+..+.++...+|++++|+||||||||||+++|++..++..| .+..-.... ........+|+++...++.
T Consensus 10 ~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G-~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~ 88 (301)
T TIGR03522 10 KLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG-SVQVCGEDVLQNPKEVQRNIGYLPEHNPLYL 88 (301)
T ss_pred EEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccChHHHHhceEEecCCCCCCC
Confidence 445555666666778889999999999999999999999999999888 443211111 1112346889988866555
Q ss_pred HHHhccchhhhhhhhccccCCc
Q 019061 192 KAIKDGKFLEFASVHGNLYGTS 213 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~~~yg~~ 213 (346)
.+ +..++..+....++..
T Consensus 89 ~~----tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 89 DM----YVREYLQFIAGIYGMK 106 (301)
T ss_pred CC----cHHHHHHHHHHHcCCC
Confidence 43 5566666555555544
No 72
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.21 E-value=4.1e-12 Score=113.75 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=55.7
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhHHHHHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAI 194 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~~~~~~ 194 (346)
++...+..+.++...+|++++|+||||||||||+++|.+..++..| .+........ .......+|+|+....+...
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~- 87 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKNIEALRRIGALIEAPGFYPNL- 87 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCCcccchHHHHhhEEEecCCCccCccC-
Confidence 4334455556677889999999999999999999999999988888 5543222111 11123577888876554433
Q ss_pred hccchhhhhhh
Q 019061 195 KDGKFLEFASV 205 (346)
Q Consensus 195 ~~~~~~e~~~~ 205 (346)
++.++..+
T Consensus 88 ---tv~e~l~~ 95 (208)
T cd03268 88 ---TARENLRL 95 (208)
T ss_pred ---cHHHHHHH
Confidence 44554433
No 73
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=3.4e-12 Score=115.33 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=51.4
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc---ccccccCCeeEEeeChhHHH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA---PRAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~---~~~~~~~g~~y~f~s~~~~~ 191 (346)
.++...+..+.++...+|++++|+||||||||||+++|++.+++..| .+...... .........+|+|+....+.
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (220)
T cd03265 9 KYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG-RATVAGHDVVREPREVRRRIGIVFQDLSVDD 86 (220)
T ss_pred EECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecCcChHHHhhcEEEecCCccccc
Confidence 34444555556677889999999999999999999999999988888 44321111 01111235778888765544
No 74
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=7.3e-12 Score=114.33 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=115.2
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee------ecCCcc-cccccCCeeEEeeCh
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS------HTTRAP-RAMEKDGVHYHFTER 187 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~------~ttr~~-~~~~~~g~~y~f~s~ 187 (346)
+.+|... +..++......+++|.|+||+||||++|+|.+...|..|...- .+.+.. -..+...++|+||+.
T Consensus 8 ~~lG~~~--l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA 85 (352)
T COG4148 8 QRLGNFA--LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA 85 (352)
T ss_pred hhcCceE--EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecc
Confidence 4444333 3333344445899999999999999999999999998883321 122211 123345689999999
Q ss_pred hHHHHHHhccchhhhhhhhccccCCcHHHHHHHHH-hCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 188 SVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVAD-AGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~-~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
.+|+.+ ++.-+..|.-.. ...+..+.+.+ -|...+|+--|..+..-.+++..+-+.+++.|.+..|+|+|...
T Consensus 86 RLFpH~----tVrgNL~YG~~~--~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 86 RLFPHY----TVRGNLRYGMWK--SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ccccce----EEecchhhhhcc--cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 999887 444444443221 11223333322 23333444333333333444445557888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHH
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN 309 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~ 309 (346)
|.....++..-+++++.+.. ...+.++|+++|+..-
T Consensus 160 D~~RK~EilpylERL~~e~~-------IPIlYVSHS~~Ev~RL 195 (352)
T COG4148 160 DLPRKREILPYLERLRDEIN-------IPILYVSHSLDEVLRL 195 (352)
T ss_pred ccchhhHHHHHHHHHHHhcC-------CCEEEEecCHHHHHhh
Confidence 87777788888888876654 3578889999887553
No 75
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=7.4e-12 Score=114.10 Aligned_cols=177 Identities=18% Similarity=0.134 Sum_probs=112.1
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeChhHHHHHHh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVMEKAIK 195 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~~~~~~~~~ 195 (346)
.+..+.++.+.+|+.++|+|+||||||||++.|.+.+++..| .+...... ....-...++|+||.++.. +.
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G-~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q---~~ 93 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG-EVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQ---LF 93 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCC-EEEECCeeccchhhHHHhhcceEEEEECcccc---cc
Confidence 344445567789999999999999999999999999999988 44221111 1111234589999987432 11
Q ss_pred ccchhhhhhhhccccCCcHHHHHHHHH-----hCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCC
Q 019061 196 DGKFLEFASVHGNLYGTSVEAVEAVAD-----AGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (346)
Q Consensus 196 ~~~~~e~~~~~~~~yg~~~~~i~~~~~-----~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~ 270 (346)
..++.+...|.....|.+.+.+++... .+..-..+-.|..+..-++++.....++...|...++||+....|...
T Consensus 94 ~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~ 173 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKG 173 (235)
T ss_pred cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHH
Confidence 224555555555556776655444322 122222334444444445555666677888888888888888887666
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHH
Q 019061 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308 (346)
Q Consensus 271 ~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~ 308 (346)
...+.+.+..+..+. -.+.|+.+|+.+.+..
T Consensus 174 ~~~l~~~l~~L~~~~-------~~tii~~tHd~~~~~~ 204 (235)
T COG1122 174 RRELLELLKKLKEEG-------GKTIIIVTHDLELVLE 204 (235)
T ss_pred HHHHHHHHHHHHhcC-------CCeEEEEeCcHHHHHh
Confidence 666666665554331 1367888888877544
No 76
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=2.5e-12 Score=117.20 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=50.1
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cc--cccCCeeEEeeChhHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RA--MEKDGVHYHFTERSVME 191 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~--~~~~g~~y~f~s~~~~~ 191 (346)
.+..+.++++.+|++++|+||||||||||+++|++.+++..| .+....... .. ....+.+|+++....+.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG-SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 455666677889999999999999999999999999998888 443211111 00 11345788888765554
No 77
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=3.3e-11 Score=116.25 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=56.3
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----c--ccccCCeeEEeeChhHHHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----R--AMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~--~~~~~g~~y~f~s~~~~~~ 192 (346)
..+..+.++...+|++++|+||||||||||+++|.+..++..| .+....... . ......++|+|+...++..
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG-RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 3455566677889999999999999999999999999998888 443221111 0 0113468899988765543
Q ss_pred HHhccchhhhhhhh
Q 019061 193 AIKDGKFLEFASVH 206 (346)
Q Consensus 193 ~~~~~~~~e~~~~~ 206 (346)
+ ++.++..+.
T Consensus 97 ~----tv~eni~~~ 106 (343)
T PRK11153 97 R----TVFDNVALP 106 (343)
T ss_pred C----cHHHHHHHH
Confidence 3 455555443
No 78
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=4.7e-12 Score=115.59 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=51.3
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccccc-ccCCeeEEeeCh
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAM-EKDGVHYHFTER 187 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~-~~~g~~y~f~s~ 187 (346)
-.|+...+..+.++...+|++++|+||||+|||||++.|++.++|..| .+..-..+.... ...-++|++|..
T Consensus 12 v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G-~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 12 VSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG-EIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred EEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcc-eEEEccccccccccCCeEEEcCccc
Confidence 345543455556677889999999999999999999999999999999 554322221111 123488998854
No 79
>PRK14530 adenylate kinase; Provisional
Probab=99.19 E-value=6.4e-10 Score=100.23 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=43.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHH
Q 019061 262 RLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 262 RL~~R~~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
|+..|.+++++.+++|+..|.++ +.+|...+.+..|.++.+++++++.+.+.+.
T Consensus 155 rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 212 (215)
T PRK14530 155 ELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID 212 (215)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHh
Confidence 45566778899999999999875 5565555567788899999999999888775
No 80
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.19 E-value=7.4e-11 Score=111.92 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=58.5
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhHH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~~ 190 (346)
.+.|+...+..+.++++.+|++++|+||||||||||+++|++..++..| .+....... ........+|+++....+
T Consensus 11 ~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~ 89 (303)
T TIGR01288 11 SKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRG-KITVLGEPVPSRARLARVAIGVVPQFDNLD 89 (303)
T ss_pred EEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECcccHHHHhhcEEEEeccccCC
Confidence 3445555556666677889999999999999999999999999988888 443211111 111134588998876555
Q ss_pred HHHHhccchhhhhhh
Q 019061 191 EKAIKDGKFLEFASV 205 (346)
Q Consensus 191 ~~~~~~~~~~e~~~~ 205 (346)
..+ ++.++..+
T Consensus 90 ~~~----tv~e~l~~ 100 (303)
T TIGR01288 90 PEF----TVRENLLV 100 (303)
T ss_pred cCC----cHHHHHHH
Confidence 433 44555443
No 81
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.19 E-value=1.4e-10 Score=99.06 Aligned_cols=171 Identities=20% Similarity=0.245 Sum_probs=109.1
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecC-------Ccccc-cccCCeeEEeeChhHHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT-------RAPRA-MEKDGVHYHFTERSVME 191 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~tt-------r~~~~-~~~~g~~y~f~s~~~~~ 191 (346)
-.+.....+....|+.++|+||||||||||+-.|++...+..| .++... ...+. ..-..++++|||+.+++
T Consensus 23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssG-eV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip 101 (228)
T COG4181 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG-EVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIP 101 (228)
T ss_pred eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCc-eEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccc
Confidence 3344555566779999999999999999999999999999888 554211 11121 12246889999999888
Q ss_pred HHHhccchhhhhhhhccccCCc----HHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 192 KAIKDGKFLEFASVHGNLYGTS----VEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~~~yg~~----~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
.+ +.+|+....-.+-|.. ...+++.++. ..+-+|+....
T Consensus 102 ~l----tAlENV~lPleL~ge~~~~~~~~A~~lL~~---------------------------------vGLg~Rl~HyP 144 (228)
T COG4181 102 NL----TALENVALPLELRGESSADSRAGAKALLEA---------------------------------VGLGKRLTHYP 144 (228)
T ss_pred cc----hhhhhccchhhhcCCccccHHHHHHHHHHH---------------------------------hCcccccccCc
Confidence 77 6677766555444422 1112221111 13445666665
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC---CHHHH-HHHHHHHHHHhhcccCceeeEeecccccc
Q 019061 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYND---KLEEC-YENLKVICYCLMQISDNLIIFLFVTYPDL 335 (346)
Q Consensus 268 ~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~---~le~~-~~~l~~iI~~l~~~~~~~~~~~~~~~~~~ 335 (346)
...+.+.+||+..+++.... .+..++++ |+|.. -.++-.++-.+...- +.+.+.+.|++..
T Consensus 145 ~qLSGGEQQRVAiARAfa~~------P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~-G~TlVlVTHD~~L 209 (228)
T COG4181 145 AQLSGGEQQRVALARAFAGR------PDVLFADEPTGNLDRATGDKIADLLFALNRER-GTTLVLVTHDPQL 209 (228)
T ss_pred cccCchHHHHHHHHHHhcCC------CCEEeccCCCCCcchhHHHHHHHHHHHHhhhc-CceEEEEeCCHHH
Confidence 55678889999998865433 45666654 56543 346666666665543 4555577777654
No 82
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.19 E-value=1.3e-10 Score=104.70 Aligned_cols=182 Identities=11% Similarity=0.086 Sum_probs=97.1
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-------ccccCCeeEEeeChhHHHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~g~~y~f~s~~~~~~~ 193 (346)
.+..+.++...+|++++|+||||||||||+++|++.+++..| .+........ .......+|+|+....+..+
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG-KIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 355556677889999999999999999999999999988888 4432211110 01124578888876555433
Q ss_pred HhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHH
Q 019061 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (346)
Q Consensus 194 ~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~ 273 (346)
++.++..+....++.......+.... .+... .+.+.+.......+.+
T Consensus 96 ----tv~e~l~~~~~~~~~~~~~~~~~~~~--------------~l~~~---------------~l~~~~~~~~~~LSgG 142 (216)
T TIGR00960 96 ----TVYDNVAFPLRIIGVPPRDANERVSA--------------ALEKV---------------GLEGKAHALPMQLSGG 142 (216)
T ss_pred ----cHHHHHHHHHHhcCCCHHHHHHHHHH--------------HHHHc---------------CChhhhhCChhhCCHH
Confidence 44444433221122211111110000 00000 0011111122234688
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 274 i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
.++|+..+++.+... ..-++|+....-|.+. .+.+.+++..+.. .+..++.+.|+++.+..+|
T Consensus 143 ~~qrv~laral~~~p-~llllDEPt~~LD~~~-~~~l~~~l~~~~~--~~~tii~vsH~~~~~~~~~ 205 (216)
T TIGR00960 143 EQQRVAIARAIVHKP-PLLLADEPTGNLDPEL-SRDIMRLFEEFNR--RGTTVLVATHDINLVETYR 205 (216)
T ss_pred HHHHHHHHHHHhcCC-CEEEEeCCCCcCCHHH-HHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhC
Confidence 999999988776541 1111233333334433 3456666666643 2344557788777665444
No 83
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.18 E-value=6.7e-12 Score=114.18 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=53.0
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeChhH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSV 189 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~~~ 189 (346)
+.++...+..+.++...+|++++|+||||||||||+++|++..++..| .+...... .......+.+|+|+....
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (232)
T cd03218 8 KRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG-KILLDGQDITKLPMHKRARLGIGYLPQEASI 86 (232)
T ss_pred EEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccCCHhHHHhccEEEecCCccc
Confidence 344444555666677889999999999999999999999999988888 44321111 111112457888887655
Q ss_pred HHH
Q 019061 190 MEK 192 (346)
Q Consensus 190 ~~~ 192 (346)
+..
T Consensus 87 ~~~ 89 (232)
T cd03218 87 FRK 89 (232)
T ss_pred ccc
Confidence 543
No 84
>PRK14531 adenylate kinase; Provisional
Probab=99.18 E-value=1.6e-09 Score=95.25 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=64.3
Q ss_pred CCceEEEecHHHHHHHH-------cCCCCeEEEEEcCCCHHHHHHHHHcCC--CCCHHHHHHHHHHHHHH----HHhccC
Q 019061 224 GKRCILDIDVQGARSVR-------ASPLDAIFIFICPPSMEELEERLRARG--TETEDQILKRLRNAKEE----IKQGKS 290 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l~-------~~~~~~~~ill~~p~~~~l~eRL~~R~--~~~~e~i~~Rl~~~~~~----i~~~~~ 290 (346)
...++||+.|....+.. .....+..++....+.+++.+|+..|+ +++++.+++|++.|.+. +++|..
T Consensus 79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~ 158 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQ 158 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999887755542 112223334444445789999998764 57788999999999865 556655
Q ss_pred CCCceEEEcCCCHHHHHHHHHHHH
Q 019061 291 SGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 291 ~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
.+.+..|.++.+++++++.+.+.+
T Consensus 159 ~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 159 RGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHh
Confidence 566778888889999998877654
No 85
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=8.6e-12 Score=114.35 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=49.2
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~~ 191 (346)
.+..+.++...+|++++|+||||+|||||+++|.+..++..| .+...... .........+|+|+....+.
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG-EIFIDGEDIREQDPVELRRKIGYVIQQIGLFP 88 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCeEcCcCChHHhhcceEEEccCccccC
Confidence 445556677889999999999999999999999999988888 44321111 11111235778888765543
No 86
>PRK14526 adenylate kinase; Provisional
Probab=99.17 E-value=7.3e-10 Score=99.66 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=66.2
Q ss_pred CCceEEEecHHHHHHHH---cCCCCeEEEEEcCCCHHHHHHHHHc---------------------------------CC
Q 019061 224 GKRCILDIDVQGARSVR---ASPLDAIFIFICPPSMEELEERLRA---------------------------------RG 267 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l~---~~~~~~~~ill~~p~~~~l~eRL~~---------------------------------R~ 267 (346)
...++||+.|....+.. ........+.+.. +.+.+.+|+.+ |.
T Consensus 78 ~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~ 156 (211)
T PRK14526 78 NDNFILDGFPRNINQAKALDKFLPNIKIINFLI-DEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRK 156 (211)
T ss_pred cCcEEEECCCCCHHHHHHHHHhcCCCEEEEEEC-CHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccC
Confidence 45788999887655543 3222233333433 46777787765 44
Q ss_pred CCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHH
Q 019061 268 TETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 268 ~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
+++++.+++|++.|.++ +++|...+.+..|.++.+++++++++.+.+.+
T Consensus 157 DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 157 DDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred CCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 77899999999999876 66776667788899999999999998887753
No 87
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.17 E-value=4e-11 Score=102.68 Aligned_cols=99 Identities=26% Similarity=0.267 Sum_probs=64.2
Q ss_pred HHHHHHHcCCeEEEeccC-cc-------CCCCCeEEEEcCCCCChHHHHHhhccccCCCcccee-------eecCCcccc
Q 019061 110 VREQKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV-------SHTTRAPRA 174 (346)
Q Consensus 110 ~~~~~~~~g~~v~~~~~~-~~-------~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i-------~~ttr~~~~ 174 (346)
..+..+.+||+++.+|.. .+ .+++++++|+|+||||||||+|.|.+.....++ .+ +|||++.+.
T Consensus 4 ~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~-~is~~~~rGkHTTt~~~l 82 (161)
T PF03193_consen 4 LLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEAKQKTG-EISEKTGRGKHTTTHREL 82 (161)
T ss_dssp HHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----S---------------SEEE
T ss_pred HHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhcchhhh-hhhcccCCCcccCCCeeE
Confidence 344568899999999875 22 347899999999999999999999998766555 33 599999988
Q ss_pred cccCCeeEEeeChhH-------HHHHHhccchhhhhhhhccc
Q 019061 175 MEKDGVHYHFTERSV-------MEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 175 ~~~~g~~y~f~s~~~-------~~~~~~~~~~~e~~~~~~~~ 209 (346)
..++..+|+..++.+ +........|.|+..+.+.|
T Consensus 83 ~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~~~~C 124 (161)
T PF03193_consen 83 FPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPLAGQC 124 (161)
T ss_dssp EEETTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHHTTHS
T ss_pred EecCCCcEEEECCCCCccccccCCHHHHHHHHHHhccccCCC
Confidence 888666777544322 12223445788888777766
No 88
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=9.2e-12 Score=113.95 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=52.4
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhHHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVME 191 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~~~ 191 (346)
+.|+...+..+.++...+|++++|+||||||||||+++|++.+++..| .+........ .......+|+++....+.
T Consensus 10 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 87 (239)
T cd03296 10 KRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG-TILFGGEDATDVPVQERNVGFVFQHYALFR 87 (239)
T ss_pred EEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCCccccceEEEecCCcccC
Confidence 344444555566677889999999999999999999999999988888 4432111110 011245788888765543
No 89
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.17 E-value=8.1e-11 Score=105.50 Aligned_cols=183 Identities=16% Similarity=0.047 Sum_probs=95.2
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhH-HHHHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSV-MEKAI 194 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~-~~~~~ 194 (346)
..+..+.++...+|++++|+||||||||||+++|++..++..| .+....... ........+|+++.... +...
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~- 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG-EVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP- 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEcccCCHHHHHhhceEEecChhhhcCCC-
Confidence 4455556677889999999999999999999999999988888 443221111 11112457788887532 2211
Q ss_pred hccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHH
Q 019061 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (346)
Q Consensus 195 ~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i 274 (346)
+..++..+....++............ .+... .+.+.+..+....+.+.
T Consensus 92 ---t~~~~l~~~~~~~~~~~~~~~~~~~~--------------~l~~~---------------~l~~~~~~~~~~LSgG~ 139 (211)
T cd03225 92 ---TVEEEVAFGLENLGLPEEEIEERVEE--------------ALELV---------------GLEGLRDRSPFTLSGGQ 139 (211)
T ss_pred ---cHHHHHHHHHHHcCCCHHHHHHHHHH--------------HHHHc---------------CcHhhhcCCcccCCHHH
Confidence 34444333211112111111110000 00000 01112222334457889
Q ss_pred HHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 275 ~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
++|+..+++.+... ..-++|+....-|.+. .+.+.+++..+.. . +..++++.|+.+.+..+|
T Consensus 140 ~qrv~laral~~~p-~llllDEPt~~LD~~~-~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~ 201 (211)
T cd03225 140 KQRVAIAGVLAMDP-DILLLDEPTAGLDPAG-RRELLELLKKLKA-E-GKTIIIVTHDLDLLLELA 201 (211)
T ss_pred HHHHHHHHHHhcCC-CEEEEcCCcccCCHHH-HHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhC
Confidence 99999988776541 1111222223334433 3456666666543 2 345557777766555444
No 90
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.17 E-value=5.1e-11 Score=107.52 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=49.6
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhHHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~~~ 191 (346)
..+..+.++...+|++++|+||||||||||+++|++..++..| .+....... ........+|+|+....+.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~ 88 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG-TAYINGYSIRTDRKAARQSLGYCPQFDALFD 88 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccchHHHhhhEEEecCcCCccc
Confidence 3455556677889999999999999999999999999988888 443211110 1111235778888765543
No 91
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.17 E-value=2.7e-12 Score=114.58 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=98.0
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--------cccccCCeeEEeeCh
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTER 187 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~g~~y~f~s~ 187 (346)
.++...+..+.++...+|++++|+||||+|||||+++|++.+++..| .+....... ......+.+|+++..
T Consensus 7 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 85 (206)
T TIGR03608 7 KFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG-QVYLNGKETPPLNSKKASKFRREKLGYLFQNF 85 (206)
T ss_pred EECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccchhhHHHHHHhCeeEEecch
Confidence 34444555666677889999999999999999999999999988888 443322110 111234688888876
Q ss_pred hHHHHHHhccchhhhhhhhccccCCcHHH----HHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHH
Q 019061 188 SVMEKAIKDGKFLEFASVHGNLYGTSVEA----VEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~~yg~~~~~----i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL 263 (346)
..+... +..++..+....++..... +.+.++. . .+.+.+
T Consensus 86 ~~~~~~----t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~------------------~---------------~l~~~~ 128 (206)
T TIGR03608 86 ALIENE----TVEENLDLGLKYKKLSKKEKREKKKEALEK------------------V---------------GLNLKL 128 (206)
T ss_pred hhccCC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHH------------------c---------------Cchhhh
Confidence 655432 4445444322222222111 1111111 0 001111
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccc
Q 019061 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDL 335 (346)
Q Consensus 264 ~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~ 335 (346)
.......+.+.++|+..++..+... ..-++|+....-|.+. .+.+.+++..+.. .+..++++.|+++.
T Consensus 129 ~~~~~~lS~G~~qr~~laral~~~p-~llllDEPt~~LD~~~-~~~l~~~l~~~~~--~~~tii~~sh~~~~ 196 (206)
T TIGR03608 129 KQKIYELSGGEQQRVALARAILKDP-PLILADEPTGSLDPKN-RDEVLDLLLELND--EGKTIIIVTHDPEV 196 (206)
T ss_pred cCChhhCCHHHHHHHHHHHHHHcCC-CEEEEeCCcCCCCHHH-HHHHHHHHHHHHh--cCCEEEEEeCCHHH
Confidence 1122334678899999988776541 1111223333335433 4567777776643 24455567787764
No 92
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.17 E-value=1.4e-10 Score=104.23 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=52.3
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChh
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERS 188 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~ 188 (346)
+.+.++...+..+.++.+.+|++++|+||||||||||+++|.+..++..| .+........ ....+.+|+|+...
T Consensus 5 l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~-~~~~~i~~v~q~~~ 78 (213)
T cd03235 5 LTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG-SIRVFGKPLE-KERKRIGYVPQRRS 78 (213)
T ss_pred ceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCccHH-HHHhheEEeccccc
Confidence 33445545556666677889999999999999999999999999988888 4443222111 11245778887654
No 93
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.17 E-value=1.2e-10 Score=104.70 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=96.0
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-------ccccCCeeEEeeChhHHHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~g~~y~f~s~~~~~~~ 193 (346)
.+..+.++...+|++++|+||||||||||++.|++.+++..| .+........ .......+|+++....+...
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG-QVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence 345555677889999999999999999999999999988888 4432221110 01124578888876555432
Q ss_pred HhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHH
Q 019061 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (346)
Q Consensus 194 ~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~ 273 (346)
++.++..+....++......++.... .+... .+.+.+.......+.+
T Consensus 95 ----tv~~~l~~~~~~~~~~~~~~~~~~~~--------------~l~~~---------------~l~~~~~~~~~~LS~G 141 (214)
T TIGR02673 95 ----TVYENVALPLEVRGKKEREIQRRVGA--------------ALRQV---------------GLEHKADAFPEQLSGG 141 (214)
T ss_pred ----cHHHHHHHHHHHcCCCHHHHHHHHHH--------------HHHHc---------------CChhhhhCChhhCCHH
Confidence 44444433211122111111110000 00000 0011111122234678
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 274 i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
.++|+..++..+... ..-++|+....-|... ...+.+++..+.. . +..++++.|+++....+|
T Consensus 142 ~~qrl~la~al~~~p-~lllLDEPt~~LD~~~-~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~ 204 (214)
T TIGR02673 142 EQQRVAIARAIVNSP-PLLLADEPTGNLDPDL-SERILDLLKRLNK-R-GTTVIVATHDLSLVDRVA 204 (214)
T ss_pred HHHHHHHHHHHhCCC-CEEEEeCCcccCCHHH-HHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhc
Confidence 899999988766431 1112233333334433 3456666666543 2 345557777776555444
No 94
>PLN02674 adenylate kinase
Probab=99.16 E-value=4.8e-10 Score=102.65 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=95.9
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~ 212 (346)
...++|+||+||||||+++.|+..+... .-.+....+.....+.. ........+.+|..+.....
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~----his~GdllR~~i~~~s~----~g~~i~~~~~~G~lvpd~iv------- 95 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLC----HLATGDMLRAAVAAKTP----LGIKAKEAMDKGELVSDDLV------- 95 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc----EEchhHHHHHHHhccCh----hhHHHHHHHHcCCccCHHHH-------
Confidence 3568999999999999999999876421 11111111110000000 00111111222222211100
Q ss_pred cHHHHHHHH---HhCCceEEEecHHHHHHHH-------cCCCCeEEEEEcCCCHHHHHHHHHcC----------------
Q 019061 213 SVEAVEAVA---DAGKRCILDIDVQGARSVR-------ASPLDAIFIFICPPSMEELEERLRAR---------------- 266 (346)
Q Consensus 213 ~~~~i~~~~---~~~~~~iLD~~~~~~~~l~-------~~~~~~~~ill~~p~~~~l~eRL~~R---------------- 266 (346)
...+.+.+ .....++||++|....+.. .....+..++....+.+.+.+|+.+|
T Consensus 96 -~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~p 174 (244)
T PLN02674 96 -VGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAP 174 (244)
T ss_pred -HHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCC
Confidence 01122222 1246789999888766653 11223333333333467888887764
Q ss_pred -----------------CCCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHH
Q 019061 267 -----------------GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 267 -----------------~~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
.+|+++.+++|++.|.++ +++|...+.+..|.++.+++++++.+..++
T Consensus 175 p~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 175 PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred CcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 477899999999999876 667766677888999999999999887754
No 95
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.16 E-value=3.2e-10 Score=97.72 Aligned_cols=170 Identities=19% Similarity=0.278 Sum_probs=106.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
...++.++|++||||.|++..|++.+. .++.+....-|..... .+.. ....+...+.+|..+......
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~-ftHlSaGdLLR~E~~~--~gse----~g~~I~~~i~~G~iVP~ei~~----- 74 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYG-FTHLSAGDLLRAEIAS--AGSE----RGALIKEIIKNGDLVPVEITL----- 74 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcC-ceeecHHHHHHHHHcc--ccCh----HHHHHHHHHHcCCcCcHHHHH-----
Confidence 567999999999999999999999875 2221111111111110 0111 122333334444433322111
Q ss_pred CcHHHHHHHHH---hCCceEEEecHHHHHHHH---cC-CCCeEEEEEcCCCHHHHHHHHHcCC------CCCHHHHHHHH
Q 019061 212 TSVEAVEAVAD---AGKRCILDIDVQGARSVR---AS-PLDAIFIFICPPSMEELEERLRARG------TETEDQILKRL 278 (346)
Q Consensus 212 ~~~~~i~~~~~---~~~~~iLD~~~~~~~~l~---~~-~~~~~~ill~~p~~~~l~eRL~~R~------~~~~e~i~~Rl 278 (346)
+-+...+. ....+++|+.|+...+.. +. ...+..+++...+.+.+.+|+..|+ |++.+.+++|+
T Consensus 75 ---~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~ 151 (195)
T KOG3079|consen 75 ---SLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRL 151 (195)
T ss_pred ---HHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHH
Confidence 11222222 223499999888766652 22 2234455555555899999987764 67899999999
Q ss_pred HHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHH
Q 019061 279 RNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 279 ~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
+.+... +++|+..+....|.++.++++++.++.+.+..
T Consensus 152 et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 152 ETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 999865 77777666677888999999999999887753
No 96
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=9e-12 Score=113.60 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=49.6
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-----c---cccCCeeEEeeChhHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----A---MEKDGVHYHFTERSVME 191 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-----~---~~~~g~~y~f~s~~~~~ 191 (346)
.+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+........ . .....++|+|+...+++
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG-DVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 455556677889999999999999999999999999988888 4432211110 0 01145889988765543
No 97
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.16 E-value=5.7e-10 Score=101.39 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=52.1
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeChhHH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~~~~ 190 (346)
.++...+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+...... .........+|+|+....+
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (230)
T TIGR03410 9 YYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDITKLPPHERARAGIAYVPQGREIF 87 (230)
T ss_pred EeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCCHHHHHHhCeEEeccCCccc
Confidence 34444555556677889999999999999999999999999998888 44322111 1111124577888876555
Q ss_pred H
Q 019061 191 E 191 (346)
Q Consensus 191 ~ 191 (346)
.
T Consensus 88 ~ 88 (230)
T TIGR03410 88 P 88 (230)
T ss_pred C
Confidence 4
No 98
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=2.2e-10 Score=106.03 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=50.2
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~ 191 (346)
++...+..+.++.+.+|++++|+||||||||||+++|++..++..| .+..-...... .....+|+|+....+.
T Consensus 11 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~-~~~~~~~v~q~~~~~~ 83 (255)
T PRK11248 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG-SITLDGKPVEG-PGAERGVVFQNEGLLP 83 (255)
T ss_pred eCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCC-CCCcEEEEeCCCccCC
Confidence 4434455556677889999999999999999999999999988888 44321111110 0123678888765443
No 99
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=8.8e-12 Score=111.85 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=50.1
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc---ccccCCeeEEeeChhHHHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~g~~y~f~s~~~~~~ 192 (346)
++...+..+.++...+| +++|+||||||||||+++|++.+++..| .+........ .......+|+|+....|..
T Consensus 10 ~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (211)
T cd03264 10 YGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSG-TIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPN 86 (211)
T ss_pred ECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCCccccchHHHHhheEEecCCCccccc
Confidence 33334555556667788 9999999999999999999999998888 4432221111 1112457788887655543
No 100
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.16 E-value=3.1e-10 Score=101.86 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=50.0
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVM 190 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~~ 190 (346)
++...+..+.++.+.+|++++|+||||||||||++.|++.+++..| .+........ .......+|+++....+
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~v~~~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (213)
T cd03301 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG-RIYIGGRDVTDLPPKDRDIAMVFQNYALY 84 (213)
T ss_pred ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCCcccceEEEEecChhhc
Confidence 3333455556677889999999999999999999999999988888 4432111110 00123578888876544
No 101
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.16 E-value=8.8e-12 Score=112.58 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=49.3
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-----c---cccCCeeEEeeChhHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----A---MEKDGVHYHFTERSVME 191 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-----~---~~~~g~~y~f~s~~~~~ 191 (346)
.+....++...+|++++|+||||||||||+++|++..++..| .+........ . ......+|+|+....++
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG-EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 455556677889999999999999999999999999998888 4432221110 0 01145788888755443
No 102
>PRK14527 adenylate kinase; Provisional
Probab=99.15 E-value=1.5e-09 Score=95.95 Aligned_cols=168 Identities=17% Similarity=0.193 Sum_probs=94.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~y 210 (346)
.++++++++||+||||||+++.|+..+.. ....+....+.....+.. ........+..+......
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~----~~is~gd~~r~~~~~~~~----~~~~~~~~~~~g~~~p~~------- 68 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGL----KKLSTGDILRDHVARGTE----LGQRAKPIMEAGDLVPDE------- 68 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC----CCCCccHHHHHHHhcCcH----HHHHHHHHHHcCCCCcHH-------
Confidence 36789999999999999999999876532 100000000000000000 000011111111111000
Q ss_pred CCcHHHHHHHHHh--CCceEEEecHHHHHHHH-------cCCCCeEEEEEcCCCHHHHHHHHHcCC------CCCHHHHH
Q 019061 211 GTSVEAVEAVADA--GKRCILDIDVQGARSVR-------ASPLDAIFIFICPPSMEELEERLRARG------TETEDQIL 275 (346)
Q Consensus 211 g~~~~~i~~~~~~--~~~~iLD~~~~~~~~l~-------~~~~~~~~ill~~p~~~~l~eRL~~R~------~~~~e~i~ 275 (346)
.....+.+.+.. +..+++|+.|....+.. ........++....+.+.+.+|+..|+ +++++.++
T Consensus 69 -~~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~ 147 (191)
T PRK14527 69 -LILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVR 147 (191)
T ss_pred -HHHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHH
Confidence 001112222222 35699999776544431 222333334444445789999998864 56789999
Q ss_pred HHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHH
Q 019061 276 KRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 276 ~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
+|++.|.+. +.+|...+.+..|.++.+++++++++...+
T Consensus 148 ~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 148 RRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 999999876 446665667788889999999999887654
No 103
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.15 E-value=1.6e-10 Score=104.03 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=95.1
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhHHHHHHhcc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
.+..+.++...+|++++|+|+||||||||+++|.+..++..| .+....... ........+|+|+...++...
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~---- 93 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG-FATVDGFDVVKEPAEARRRLGFVSDSTGLYDRL---- 93 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEEcccCHHHHHhhEEEecCCcccCcCC----
Confidence 455556677789999999999999999999999999988888 443211111 111124578888876555432
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
++.++..+....++............ .+..... .+.++++. ...+.+.++|
T Consensus 94 tv~e~l~~~~~~~~~~~~~~~~~~~~--------------~l~~~~l-----------~~~~~~~~----~~LS~G~~qr 144 (218)
T cd03266 94 TARENLEYFAGLYGLKGDELTARLEE--------------LADRLGM-----------EELLDRRV----GGFSTGMRQK 144 (218)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHH--------------HHHHcCC-----------HHHHhhhh----hhcCHHHHHH
Confidence 44555443322233222111111000 0000000 01122222 2346788899
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhh
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLL 339 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~ 339 (346)
+..+++.+... ..-++|+....-|... ...+.+++..+.. .+..++++.|+.+....+
T Consensus 145 v~laral~~~p-~illlDEPt~~LD~~~-~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~ 202 (218)
T cd03266 145 VAIARALVHDP-PVLLLDEPTTGLDVMA-TRALREFIRQLRA--LGKCILFSTHIMQEVERL 202 (218)
T ss_pred HHHHHHHhcCC-CEEEEcCCCcCCCHHH-HHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHh
Confidence 99888766541 1111222222224433 3456666666632 234554677766544433
No 104
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.15 E-value=8.7e-12 Score=113.12 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=55.2
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc-----CCCccceeeecCCcc------cccccCCeeEEee
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF-----PSMFGFSVSHTTRAP------RAMEKDGVHYHFT 185 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~-----~~~~g~~i~~ttr~~------~~~~~~g~~y~f~ 185 (346)
++...+..+.++...+|++++|+||||||||||+++|++.. ++..| .+....... ........+|+|+
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q 88 (227)
T cd03260 10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG-EVLLDGKDIYDLDVDVLELRRRVGMVFQ 88 (227)
T ss_pred cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCe-EEEECCEEhhhcchHHHHHHhhEEEEec
Confidence 33334555566777899999999999999999999999998 77777 443221111 1111245789988
Q ss_pred ChhHHHHHHhccchhhhhhh
Q 019061 186 ERSVMEKAIKDGKFLEFASV 205 (346)
Q Consensus 186 s~~~~~~~~~~~~~~e~~~~ 205 (346)
...++ .. ++.++..+
T Consensus 89 ~~~~~-~~----tv~e~l~~ 103 (227)
T cd03260 89 KPNPF-PG----SIYDNVAY 103 (227)
T ss_pred Cchhc-cc----cHHHHHHh
Confidence 86655 32 55555443
No 105
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.14 E-value=2.9e-10 Score=102.08 Aligned_cols=182 Identities=14% Similarity=0.116 Sum_probs=96.6
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-------cccccCCeeEEeeChhHHHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-------RAMEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-------~~~~~~g~~y~f~s~~~~~~~ 193 (346)
.+..+.++...+|++++|+||||||||||++.|++.+++..| .+....... ......+.+|+++....+...
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG-TIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 345555677789999999999999999999999999988888 443211110 011224578888876655432
Q ss_pred HhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHH
Q 019061 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (346)
Q Consensus 194 ~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~ 273 (346)
+..++..+....++...+...+.... .+... .+...+.......+.+
T Consensus 94 ----t~~~~l~~~~~~~~~~~~~~~~~~~~--------------~l~~~---------------~l~~~~~~~~~~LS~G 140 (214)
T cd03292 94 ----NVYENVAFALEVTGVPPREIRKRVPA--------------ALELV---------------GLSHKHRALPAELSGG 140 (214)
T ss_pred ----cHHHHHHHHHHHcCCCHHHHHHHHHH--------------HHHHc---------------CCHHHhhCChhhcCHH
Confidence 44444433221222221111111000 00000 0111111222234688
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 274 i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
.++|+..++..+... ..-++|+....-|.+. .+.+.+++..+.. .+.+++.+.|+.+.+..+|
T Consensus 141 ~~qrv~laral~~~p-~llllDEPt~~LD~~~-~~~~~~~l~~~~~--~~~tiiivtH~~~~~~~~~ 203 (214)
T cd03292 141 EQQRVAIARAIVNSP-TILIADEPTGNLDPDT-TWEIMNLLKKINK--AGTTVVVATHAKELVDTTR 203 (214)
T ss_pred HHHHHHHHHHHHcCC-CEEEEeCCCCcCCHHH-HHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhC
Confidence 899999988776541 1111223333334433 3456666766632 2455557778776655444
No 106
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.13 E-value=2.9e-10 Score=103.99 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=44.4
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
+.+|...++.+.++.+.+|++++|+||||||||||+++|++..++..| .+.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G-~i~ 79 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG-EVR 79 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEE
Confidence 667777777777788889999999999999999999999999988888 443
No 107
>PRK10908 cell division protein FtsE; Provisional
Probab=99.13 E-value=3.9e-10 Score=101.96 Aligned_cols=183 Identities=12% Similarity=0.076 Sum_probs=96.0
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cc--cccCCeeEEeeChhHHHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RA--MEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~--~~~~g~~y~f~s~~~~~~ 192 (346)
..+..+.++...+|++++|+||||||||||+++|++.+++..| .+....... .. ......+|+|+....+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAG-KIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 3455556677889999999999999999999999999988888 443221111 00 112457888887654433
Q ss_pred HHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHH
Q 019061 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (346)
Q Consensus 193 ~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e 272 (346)
. ++.++..+....++...+........ .+... .+.+.+.......+.
T Consensus 94 ~----tv~~~l~~~~~~~~~~~~~~~~~~~~--------------~l~~~---------------~l~~~~~~~~~~LS~ 140 (222)
T PRK10908 94 R----TVYDNVAIPLIIAGASGDDIRRRVSA--------------ALDKV---------------GLLDKAKNFPIQLSG 140 (222)
T ss_pred c----cHHHHHHhHHHhcCCCHHHHHHHHHH--------------HHHHc---------------CChhhhhCCchhCCH
Confidence 2 44444433221222222111111000 00000 001111122233467
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 273 ~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
+.++|+..+++.+... ..-++|+....-|.+. .+.+.+++..+.. .+..++++.|+++....+|
T Consensus 141 G~~qrv~laral~~~p-~llllDEPt~~LD~~~-~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~ 204 (222)
T PRK10908 141 GEQQRVGIARAVVNKP-AVLLADEPTGNLDDAL-SEGILRLFEEFNR--VGVTVLMATHDIGLISRRS 204 (222)
T ss_pred HHHHHHHHHHHHHcCC-CEEEEeCCCCcCCHHH-HHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhC
Confidence 8899999888776541 1111222222224433 3456666666643 2345557778777665544
No 108
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.8e-11 Score=112.24 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=51.3
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~~ 191 (346)
++...+..+.++...+|++++|+||||||||||+++|++..++..| .+...... .........+|+|+....+.
T Consensus 13 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~ 90 (241)
T PRK14250 13 SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG-SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE 90 (241)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcChHHhhhcEEEEecCchhch
Confidence 4334455556677789999999999999999999999999988888 44321111 11111245788888866553
No 109
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=1.4e-11 Score=112.58 Aligned_cols=71 Identities=23% Similarity=0.199 Sum_probs=49.7
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-------cccccCCeeEEeeChhHHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-------RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-------~~~~~~g~~y~f~s~~~~~ 191 (346)
..+..+.++...+|++++|+||||||||||+++|++.+++..| .+..-.... ........+|+++....+.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG-SVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 4455556677889999999999999999999999999988888 443211111 0111245778887765544
No 110
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.13 E-value=8.9e-12 Score=120.61 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=83.0
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--------cccccCCeeEEeeC
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTE 186 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~g~~y~f~s 186 (346)
+.||...+ +.++.+.+|++++|+||||||||||+++|++..++..| .+....... ........+|+|+.
T Consensus 8 k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 84 (352)
T PRK11144 8 QQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKG-RIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84 (352)
T ss_pred EEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccccchhhCCEEEEcCC
Confidence 34554332 45566779999999999999999999999999988888 443211110 11123468899988
Q ss_pred hhHHHHHHhccchhhhhhhhccccCCcHHHHHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHc
Q 019061 187 RSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (346)
Q Consensus 187 ~~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~ 265 (346)
..+|+.+ ++.++..+... ....+.+.+.++. +..-.++-.+..+..-++++......++..|+...+||++.+
T Consensus 85 ~~l~~~~----tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~ 158 (352)
T PRK11144 85 ARLFPHY----KVRGNLRYGMA--KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred cccCCCC----cHHHHHHhhhh--hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 7666543 44444433211 1111223333322 111111212221111122222333344455555566666666
Q ss_pred CCCCCHHHHHHHHHHH
Q 019061 266 RGTETEDQILKRLRNA 281 (346)
Q Consensus 266 R~~~~~e~i~~Rl~~~ 281 (346)
.|..+...+.+.+..+
T Consensus 159 LD~~~~~~l~~~L~~l 174 (352)
T PRK11144 159 LDLPRKRELLPYLERL 174 (352)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6655555555555443
No 111
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.13 E-value=1.1e-11 Score=119.99 Aligned_cols=177 Identities=18% Similarity=0.130 Sum_probs=92.5
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--------cccccCCeeEEeeCh
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTER 187 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~g~~y~f~s~ 187 (346)
.|+...+ +.++...+|++++|+||||||||||+++|++..++..| .+....+.. ........+|+|+..
T Consensus 8 ~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~ 84 (354)
T TIGR02142 8 RLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG-EIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84 (354)
T ss_pred EECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECccCccccccchhhCCeEEEecCC
Confidence 4444333 45566789999999999999999999999999988888 443211111 011234688999887
Q ss_pred hHHHHHHhccchhhhhhhhccccCCc--HHHHHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHH
Q 019061 188 SVMEKAIKDGKFLEFASVHGNLYGTS--VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~~yg~~--~~~i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~ 264 (346)
.+|+.+ ++.++..+....+... .+.+.+.++. +..-.++-.+..+..-++++......++..|++..+||++.
T Consensus 85 ~l~~~~----tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts 160 (354)
T TIGR02142 85 RLFPHL----SVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA 160 (354)
T ss_pred ccCCCC----cHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 665543 4445444321111111 1112222221 11111222222222222333333344555555666666676
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHH
Q 019061 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEEC 306 (346)
Q Consensus 265 ~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~ 306 (346)
+.|..+...+.+.+..+..+.. ...++.+|+++++
T Consensus 161 ~LD~~~~~~l~~~L~~l~~~~g-------~tiiivtH~~~~~ 195 (354)
T TIGR02142 161 ALDDPRKYEILPYLERLHAEFG-------IPILYVSHSLQEV 195 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC-------CEEEEEecCHHHH
Confidence 6665555555555544332110 2455566666554
No 112
>PRK13808 adenylate kinase; Provisional
Probab=99.12 E-value=1.3e-09 Score=103.67 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=68.5
Q ss_pred CCceEEEecHHHHHHHHc-------CCCCe-EEEEEcCCCHHHHHHHHHcC------------CCCCHHHHHHHHHHHHH
Q 019061 224 GKRCILDIDVQGARSVRA-------SPLDA-IFIFICPPSMEELEERLRAR------------GTETEDQILKRLRNAKE 283 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l~~-------~~~~~-~~ill~~p~~~~l~eRL~~R------------~~~~~e~i~~Rl~~~~~ 283 (346)
...+|||++|....|... ....+ ++|++.. +.+++.+|+..| .+++.+.+++|+..|..
T Consensus 78 ~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDV-p~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~ 156 (333)
T PRK13808 78 ANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRV-NEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRA 156 (333)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEEC-CHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHH
Confidence 357999998887666531 22233 3344444 468888888765 35678999999999887
Q ss_pred H----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 284 E----IKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 284 ~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
+ +.+|...+.+..|.++.++++++++|..+|..+.
T Consensus 157 ~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~ 195 (333)
T PRK13808 157 QTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVG 195 (333)
T ss_pred HhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 7 6666555567788888899999999999998774
No 113
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.12 E-value=8.3e-12 Score=111.86 Aligned_cols=49 Identities=29% Similarity=0.484 Sum_probs=40.2
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcccee
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i 165 (346)
.++...+..+.++.+.+|++++|+||||+|||||+++|.+..++..| .+
T Consensus 11 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i 59 (207)
T PRK13539 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG-TI 59 (207)
T ss_pred EECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eE
Confidence 34444455556677889999999999999999999999999988888 44
No 114
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.11 E-value=4.9e-10 Score=103.89 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=52.1
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~ 191 (346)
+.++...++.+.++...+|++++|+||||||||||+++|.+..++..| .+........ ......+|+|+...++.
T Consensus 20 ~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~-~~~~~i~~v~q~~~l~~ 94 (257)
T PRK11247 20 KRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-ELLAGTAPLA-EAREDTRLMFQDARLLP 94 (257)
T ss_pred EEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEHH-HhhCceEEEecCccCCC
Confidence 344444455556677889999999999999999999999999988888 4432221111 11235778888765543
No 115
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.11 E-value=1.4e-11 Score=110.08 Aligned_cols=50 Identities=24% Similarity=0.255 Sum_probs=41.1
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
.++...+..+.++...+|++++|+||||||||||+++|++.+++..| .+.
T Consensus 10 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~v~ 59 (204)
T PRK13538 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG-EVL 59 (204)
T ss_pred EECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEE
Confidence 34444555666677889999999999999999999999999999888 443
No 116
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.11 E-value=1.5e-09 Score=95.10 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=91.5
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~ 212 (346)
.++++++||+||||||+++.|+..+ |.....+..-.+. +..+.. .....+......+........ +..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~----g~~~~~~g~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~ 70 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY----GFTHLSTGDLLRA-EVASGS---ERGKQLQAIMESGDLVPLDTV----LDL 70 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCcEEeHHHHHHH-HHhcCC---HHHHHHHHHHHCCCCCCHHHH----HHH
Confidence 4689999999999999999998654 2111111000000 000000 000111111111111110000 000
Q ss_pred cHHHHHHHHHhCCceEEEecHHHHHHH---HcCCCCeEEEEEcCCCHHHHHHHHHcCCC------CCHHHHHHHHHHHHH
Q 019061 213 SVEAVEAVADAGKRCILDIDVQGARSV---RASPLDAIFIFICPPSMEELEERLRARGT------ETEDQILKRLRNAKE 283 (346)
Q Consensus 213 ~~~~i~~~~~~~~~~iLD~~~~~~~~l---~~~~~~~~~ill~~p~~~~l~eRL~~R~~------~~~e~i~~Rl~~~~~ 283 (346)
..+.+......+..+++|+.|....+. ......+..++....+.+.+.+|+..|+. ++++.+++|+..+..
T Consensus 71 l~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~ 150 (188)
T TIGR01360 71 LKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYK 150 (188)
T ss_pred HHHHHHcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHH
Confidence 111222223456789999987655443 22222333333333347889999887752 467889999998875
Q ss_pred H----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHH
Q 019061 284 E----IKQGKSSGIFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 284 ~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
+ +.+|...+.+..+.++.+++++++.+.+.++.
T Consensus 151 ~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 151 ATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred hhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 4 23443334555677778999999988887764
No 117
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.11 E-value=1.7e-11 Score=111.97 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=51.0
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhHHH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~~~ 191 (346)
.++...++.+.++.+.+|++++|+||||||||||+++|++..++..| .+....... ........+|+++....+.
T Consensus 10 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~ 87 (236)
T TIGR03864 10 AYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG-QISVAGHDLRRAPRAALARLGVVFQQPTLDL 87 (236)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEcccCChhhhhhEEEeCCCCCCcc
Confidence 34444555556677889999999999999999999999999988888 443211111 0111235778888755433
No 118
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.10 E-value=1.5e-11 Score=112.62 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=53.0
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeChhH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~~ 189 (346)
+.++...+..+.++.+.+|++++|+||||+|||||+++|.+.+++..| .+..-.... ......+.+|+|+....
T Consensus 10 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (242)
T TIGR03411 10 VSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG-SVLFGGTDLTGLPEHQIARAGIGRKFQKPTV 88 (242)
T ss_pred EEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCeecCCCCHHHHHhcCeeEecccccc
Confidence 344444556666677889999999999999999999999999988888 443222111 11112458888887655
Q ss_pred HH
Q 019061 190 ME 191 (346)
Q Consensus 190 ~~ 191 (346)
+.
T Consensus 89 ~~ 90 (242)
T TIGR03411 89 FE 90 (242)
T ss_pred CC
Confidence 54
No 119
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.10 E-value=7.8e-10 Score=97.59 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=46.8
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc------cccccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~g~~y~f~s~ 187 (346)
.+..+.++...+|++++|+||||||||||+++|.+..++..| .+....... ......+.+|+|+..
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG-AVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-eEEECCEEccccccchHHHHhhEEEEecCh
Confidence 344455567789999999999999999999999999988888 443221111 011124578888875
No 120
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.10 E-value=1.4e-11 Score=111.85 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecC----CcccccccCCeeEEeeChhH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT----RAPRAMEKDGVHYHFTERSV 189 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~tt----r~~~~~~~~g~~y~f~s~~~ 189 (346)
.+.++...+..+.++.+.+|++++|+||||||||||+++|++..++..| .+.... +..........+|+|+...+
T Consensus 14 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l 92 (225)
T PRK10247 14 GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDISTLKPEIYRQQVSYCAQTPTL 92 (225)
T ss_pred EEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEcCcCCHHHHHhccEEEeccccc
Confidence 3444444556666677889999999999999999999999999988888 443211 11111112457788887654
Q ss_pred H
Q 019061 190 M 190 (346)
Q Consensus 190 ~ 190 (346)
+
T Consensus 93 ~ 93 (225)
T PRK10247 93 F 93 (225)
T ss_pred c
Confidence 4
No 121
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.10 E-value=8.8e-10 Score=98.85 Aligned_cols=186 Identities=16% Similarity=0.090 Sum_probs=97.4
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc------cccccCCeeEEeeChhHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~g~~y~f~s~~~~ 190 (346)
++...+..+.+++..+|++++|+||||||||||+++|++..++..| .+....+.. ......+.+|+++....+
T Consensus 10 ~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (213)
T cd03262 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG-TIIIDGLKLTDDKKNINELRQKVGMVFQQFNLF 88 (213)
T ss_pred ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCccchhHHHHHhcceEEecccccC
Confidence 4434455556677889999999999999999999999999988888 443221111 111234678888876554
Q ss_pred HHHHhccchhhhhhhhcc-ccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCC
Q 019061 191 EKAIKDGKFLEFASVHGN-LYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (346)
Q Consensus 191 ~~~~~~~~~~e~~~~~~~-~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~ 269 (346)
... ++.++..+... .++...+...+.... .+... .+.+.+......
T Consensus 89 ~~~----t~~e~l~~~~~~~~~~~~~~~~~~~~~--------------~l~~~---------------~l~~~~~~~~~~ 135 (213)
T cd03262 89 PHL----TVLENITLAPIKVKGMSKAEAEERALE--------------LLEKV---------------GLADKADAYPAQ 135 (213)
T ss_pred CCC----cHHHHHHhHHHHhcCCCHHHHHHHHHH--------------HHHHc---------------CCHhHhhhCccc
Confidence 322 34444332211 112111111111000 00000 011111222234
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 270 ~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
.+.+.++|+..++..+... ..-++|+....-|.+. .+.+.+++..+.. . +..++++.|+++.+..+|
T Consensus 136 LS~G~~qrv~la~al~~~p-~llllDEP~~~LD~~~-~~~l~~~l~~~~~-~-~~tvi~~sh~~~~~~~~~ 202 (213)
T cd03262 136 LSGGQQQRVAIARALAMNP-KVMLFDEPTSALDPEL-VGEVLDVMKDLAE-E-GMTMVVVTHEMGFAREVA 202 (213)
T ss_pred cCHHHHHHHHHHHHHhcCC-CEEEEeCCccCCCHHH-HHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhC
Confidence 4688899999888766541 1111222222234433 4566667776643 2 344446777776655444
No 122
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.10 E-value=1.6e-11 Score=111.22 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=48.0
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-------ccccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~g~~y~f~s~ 187 (346)
.+..+.++...+|++++|+||||||||||+++|++.+++..| .+........ .......+|+|+..
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG-SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDP 91 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEccccchhhHHHhhccEEEEecCc
Confidence 455556677889999999999999999999999999988888 4432211110 11224678888876
No 123
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.09 E-value=4.7e-10 Score=102.74 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=49.8
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-------ccccCCeeEEeeChhHHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVME 191 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~g~~y~f~s~~~~~ 191 (346)
..+..+.++++.+|++++|+||||||||||+++|++.+++..| .+..-..... .......+|+|+....+.
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG-SILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCcc-EEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 3455556677889999999999999999999999999988888 4432111100 011245788888765554
No 124
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=1.7e-11 Score=109.95 Aligned_cols=175 Identities=14% Similarity=0.098 Sum_probs=93.0
Q ss_pred ccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc--cccCCeeEEeeChhHHHHHHhccchhhh
Q 019061 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--MEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (346)
Q Consensus 125 ~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~--~~~~g~~y~f~s~~~~~~~~~~~~~~e~ 202 (346)
+.++.+.+|++++|+||||||||||+++|.+..++..| .+......... ......+|+|+....++.. +..++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~en 90 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG-RVLINGVDVTAAPPADRPVSMLFQENNLFAHL----TVEQN 90 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcCcCCHhHccEEEEecccccCCCC----cHHHH
Confidence 44466779999999999999999999999999988888 44322211100 1124578888876555432 44444
Q ss_pred hhhhccc-cCCcH---HHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHH
Q 019061 203 ASVHGNL-YGTSV---EAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (346)
Q Consensus 203 ~~~~~~~-yg~~~---~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl 278 (346)
..+.... ..... +.+.+.++. . .+.+.+.......+.+.++|+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~------------------~---------------~l~~~~~~~~~~LS~G~~qrv 137 (211)
T cd03298 91 VGLGLSPGLKLTAEDRQAIEVALAR------------------V---------------GLAGLEKRLPGELSGGERQRV 137 (211)
T ss_pred HhcccccccCccHHHHHHHHHHHHH------------------c---------------CCHHHHhCCcccCCHHHHHHH
Confidence 4332111 01111 111111111 0 011111222233467888999
Q ss_pred HHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 279 ~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
..++..+... ..-++|+....-|.+. .+.+.+++..+... .+..++.+.|+.+.+..+|
T Consensus 138 ~ia~al~~~p-~llllDEP~~~LD~~~-~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~ 196 (211)
T cd03298 138 ALARVLVRDK-PVLLLDEPFAALDPAL-RAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLA 196 (211)
T ss_pred HHHHHHhcCC-CEEEEcCCcccCCHHH-HHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhh
Confidence 8888766441 1111233333334433 34566666665432 2445546777776655444
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.9e-11 Score=114.61 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=47.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeec----CCcccccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT----TRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~t----tr~~~~~~~~g~~y~f~s~ 187 (346)
+..+.++++.+|++++|+||||+|||||+++|++..++..| .+..- +...........+|+|+..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 90 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG-TITVGGMVLSEETVWDVRRQVGMVFQNP 90 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHHHhhheEEEEeCH
Confidence 44555677789999999999999999999999999999888 44321 1111111234588999886
No 126
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.09 E-value=2.5e-11 Score=110.14 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=48.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccc---cccCCeeEEeeChhHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRA---MEKDGVHYHFTERSVME 191 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~---~~~~g~~y~f~s~~~~~ 191 (346)
+..+.++.+.+|++++|+||||+|||||+++|++.+++..| .+...... ... ....+.+|+|+...++.
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSG-EVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe-eEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 45556677889999999999999999999999999988888 44321111 100 11235788887765443
No 127
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=1.6e-11 Score=112.42 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=53.6
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeChh
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS 188 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~ 188 (346)
.+.++...+..+.++...+|++++|+||||||||||++.|.+..++..| .+....... ......+.+|+|+...
T Consensus 10 ~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 88 (241)
T PRK10895 10 AKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG-NIIIDDEDISLLPLHARARRGIGYLPQEAS 88 (241)
T ss_pred EEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHHhCeEEeccCCc
Confidence 3445544556666677889999999999999999999999999988888 443221111 1111245788888765
Q ss_pred HHH
Q 019061 189 VME 191 (346)
Q Consensus 189 ~~~ 191 (346)
.+.
T Consensus 89 ~~~ 91 (241)
T PRK10895 89 IFR 91 (241)
T ss_pred ccc
Confidence 544
No 128
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.08 E-value=1.2e-10 Score=101.59 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=95.9
Q ss_pred HHHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc---cccC-CeeEEee
Q 019061 110 VREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA---MEKD-GVHYHFT 185 (346)
Q Consensus 110 ~~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~---~~~~-g~~y~f~ 185 (346)
++++.|.||.+++....+..+.+|++..|+||||+|||||+.++..+.+...| .+..-.+.... .++. ..+..-|
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G-~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSG-EITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCc-eEEEeeeecccCChHHHHHHHHHHHh
Confidence 35678999999999888888999999999999999999999999999988888 44321111000 0000 0000001
Q ss_pred ChhHHHHHHhccchhhhhhhhccccCCcHH----HHHHHHHhCCceEEEecHHHHHHH---HcCCCCeEEEEEcCCCHHH
Q 019061 186 ERSVMEKAIKDGKFLEFASVHGNLYGTSVE----AVEAVADAGKRCILDIDVQGARSV---RASPLDAIFIFICPPSMEE 258 (346)
Q Consensus 186 s~~~~~~~~~~~~~~e~~~~~~~~yg~~~~----~i~~~~~~~~~~iLD~~~~~~~~l---~~~~~~~~~ill~~p~~~~ 258 (346)
... +...+.....+-|++|+-.. |.+.. .+.++++. .-+-|+.-+-+.++ ++++.....++....+.-.
T Consensus 83 ~N~-i~~rlTV~dLv~FGRfPYSq-GRlt~eD~~~I~~aiey--l~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl 158 (252)
T COG4604 83 ENH-INSRLTVRDLVGFGRFPYSQ-GRLTKEDRRIINEAIEY--LHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL 158 (252)
T ss_pred hch-hhheeEHHHHhhcCCCcccC-CCCchHHHHHHHHHHHH--hcccchHHHhHHhcccchhhhhhhheeeeccCcEEE
Confidence 111 10001111222333332211 22222 22222221 11111111111222 3344445566666666778
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 019061 259 LEERLRARGTETEDQILKRLRNAKEEIKQ 287 (346)
Q Consensus 259 l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~ 287 (346)
++|+|++.+...+-.+++-++++..++..
T Consensus 159 LDEPLNNLDmkHsv~iMk~Lrrla~el~K 187 (252)
T COG4604 159 LDEPLNNLDMKHSVQIMKILRRLADELGK 187 (252)
T ss_pred ecCcccccchHHHHHHHHHHHHHHHHhCC
Confidence 88999999877777888888887766543
No 129
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.08 E-value=6.8e-10 Score=113.09 Aligned_cols=175 Identities=14% Similarity=0.085 Sum_probs=105.4
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhHHHHHHhccc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~~~~~~~~~~ 198 (346)
+..+.++.+.+|+.++|+||||||||||++.|.+.+++..| .|.....+. ....++..+|++|+..+|.. +
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-----T 423 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQG-EVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-----T 423 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhHHHHHHhheEEEccCcccccc-----c
Confidence 45556677889999999999999999999999999999888 554322211 11223468899998877654 5
Q ss_pred hhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHH
Q 019061 199 FLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (346)
Q Consensus 199 ~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl 278 (346)
..++..+...- .+.+.+.++++.... + ..+... ++.++.++..+|..-+.+.+||+
T Consensus 424 I~eNI~~g~~~--~~~e~i~~al~~a~l---~------~~i~~l-------------p~GldT~ige~G~~LSGGQrQRi 479 (529)
T TIGR02868 424 VRDNLRLGRPD--ATDEELWAALERVGL---A------DWLRSL-------------PDGLDTVLGEGGARLSGGERQRL 479 (529)
T ss_pred HHHHHhccCCC--CCHHHHHHHHHHcCC---H------HHHHhC-------------cccccchhccccCcCCHHHHHHH
Confidence 66776553211 233444444432110 0 001100 23556677777777789999999
Q ss_pred HHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecc
Q 019061 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVT 331 (346)
Q Consensus 279 ~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~ 331 (346)
..+++.+...+ .-++|+...+-|.+. .+.+.+.+.++ .+..+.+.+.|
T Consensus 480 aiARall~~~~-iliLDE~TSaLD~~t-e~~I~~~l~~~---~~~~TvIiItH 527 (529)
T TIGR02868 480 ALARALLADAP-ILLLDEPTEHLDAGT-ESELLEDLLAA---LSGKTVVVITH 527 (529)
T ss_pred HHHHHHhcCCC-EEEEeCCcccCCHHH-HHHHHHHHHHh---cCCCEEEEEec
Confidence 99998876521 112233333334432 34555555544 23455546666
No 130
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.08 E-value=1.5e-11 Score=113.18 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=52.0
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc------------cccccCCeeE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------------RAMEKDGVHY 182 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~------------~~~~~~g~~y 182 (346)
+.++...+..+.++...+|++++|+||||||||||+++|++.+++..| .+....... ........+|
T Consensus 11 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 89 (250)
T PRK11264 11 KKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG-TIRVGDITIDTARSLSQQKGLIRQLRQHVGF 89 (250)
T ss_pred EEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccccccchhhHHHHhhhhEEE
Confidence 344444555666677889999999999999999999999999988777 443211100 0111245788
Q ss_pred EeeChhHHH
Q 019061 183 HFTERSVME 191 (346)
Q Consensus 183 ~f~s~~~~~ 191 (346)
+++....+.
T Consensus 90 v~q~~~~~~ 98 (250)
T PRK11264 90 VFQNFNLFP 98 (250)
T ss_pred EecCcccCC
Confidence 888765443
No 131
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=4.1e-11 Score=109.24 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=50.9
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhHHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVME 191 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~~~ 191 (346)
++...+..+.++.+.+|++++|+||||+|||||+++|.+.+++..| .+..-..... .......+|+++....+.
T Consensus 10 ~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 85 (232)
T cd03300 10 YGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG-EILLDGKDITNLPPHKRPVNTVFQNYALFP 85 (232)
T ss_pred eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCChhhcceEEEecccccCC
Confidence 4444555556677789999999999999999999999999998888 4432111110 011245778888765554
No 132
>PLN02459 probable adenylate kinase
Probab=99.08 E-value=2.1e-09 Score=99.01 Aligned_cols=169 Identities=22% Similarity=0.164 Sum_probs=96.3
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCCc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTS 213 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~~ 213 (346)
..++|+||+||||||++..|+..+.. ....+....+.....+. .........+.+|..+....... ..
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~----~~is~gdllR~ei~~~t----~lg~~i~~~~~~G~lVPdeiv~~----ll 97 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGV----PHIATGDLVREEIKSSG----PLGAQLKEIVNQGKLVPDEIIFS----LL 97 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC----cEEeCcHHHHHHHhccc----hhHHHHHHHHHcCCccCHHHHHH----HH
Confidence 45888999999999999999887532 11111111111000000 00111222233333222111100 00
Q ss_pred HHHHHHHH-HhCCceEEEecHHHHHHHH---cCCCCeEEEEEcCCCHHHHHHHHHc------------------------
Q 019061 214 VEAVEAVA-DAGKRCILDIDVQGARSVR---ASPLDAIFIFICPPSMEELEERLRA------------------------ 265 (346)
Q Consensus 214 ~~~i~~~~-~~~~~~iLD~~~~~~~~l~---~~~~~~~~ill~~p~~~~l~eRL~~------------------------ 265 (346)
.+.+.... .....++||++|....|.. .......++++..| .+++.+|+.+
T Consensus 98 ~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~-d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~ 176 (261)
T PLN02459 98 SKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLR-EEVLVEKCLGRRICSECGKNFNVADIDLKGEDGR 176 (261)
T ss_pred HHHHhcccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECC-HHHHHHHhhccccccccCcccccccccccccccc
Confidence 11111110 1236789999888776653 22222334444443 5666666654
Q ss_pred --------------------CCCCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHH
Q 019061 266 --------------------RGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 266 --------------------R~~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
|.+++++.+++|++.|.++ +.+|...+.+..+.++.+++++++++.+++.
T Consensus 177 ~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~ 250 (261)
T PLN02459 177 PGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALN 250 (261)
T ss_pred ccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhc
Confidence 4477899999999999876 6677777778888899999999999888774
No 133
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.07 E-value=1.3e-11 Score=111.13 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=50.5
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc-cccCCeeEEeeChhHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVHYHFTERSVM 190 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~g~~y~f~s~~~~ 190 (346)
+.++...+..+.++.+.+|++++|+||||+|||||+++|.+.+++..| .+......... ......+|+++....+
T Consensus 19 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~i~~~~~~~~i~~~~q~~~~~ 94 (214)
T PRK13543 19 FSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG-QIQIDGKTATRGDRSRFMAYLGHLPGLK 94 (214)
T ss_pred EecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe-eEEECCEEccchhhhhceEEeecCcccc
Confidence 344444555666677889999999999999999999999999998888 44322111110 1123467777654433
No 134
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=5.9e-10 Score=104.95 Aligned_cols=65 Identities=18% Similarity=0.080 Sum_probs=47.6
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc------ccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~g~~y~f~s~ 187 (346)
++.+.++.+.+|++++|+||||||||||+++|++.+++..| .+........ ......++|+|+..
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~ 92 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG-KIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEECCEECCCcCccHHHHhhceEEEecCc
Confidence 45556677889999999999999999999999999998888 4432111110 11124688999975
No 135
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.07 E-value=2.8e-10 Score=111.72 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=54.5
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChh
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS 188 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~ 188 (346)
+.+.|+...+..+.++.+.+|++++|+||||||||||+++|.+.+++..| .+....+.. ........+|+++...
T Consensus 9 ls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG-~I~l~G~~i~~~~~~~~~~~ig~v~q~~~ 87 (402)
T PRK09536 9 LSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG-TVLVAGDDVEALSARAASRRVASVPQDTS 87 (402)
T ss_pred EEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCc-EEEECCEEcCcCCHHHHhcceEEEccCCC
Confidence 33456666666667788889999999999999999999999999998888 443222111 1111245788888765
Q ss_pred HH
Q 019061 189 VM 190 (346)
Q Consensus 189 ~~ 190 (346)
.+
T Consensus 88 l~ 89 (402)
T PRK09536 88 LS 89 (402)
T ss_pred CC
Confidence 43
No 136
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.07 E-value=8.9e-10 Score=105.79 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=48.1
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cc--cccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RA--MEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~--~~~~g~~y~f~s~ 187 (346)
.+..+.++++.+|++++|+|+||||||||+++|++.+++..| .+..-.... .. .....++|+||+.
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~ 107 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDG-EVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP 107 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCc-EEEECCEECCcCCHHHHHHHhCceEEEecCc
Confidence 355556678889999999999999999999999999988878 443211111 00 1124688999985
No 137
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.07 E-value=4.9e-11 Score=111.23 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=52.8
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----c---ccccCCeeEEeeCh
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----R---AMEKDGVHYHFTER 187 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~---~~~~~g~~y~f~s~ 187 (346)
+.++...++.+.++.+.+|++++|+||||||||||+++|++..++..| .+....... . .......+|+|+..
T Consensus 15 ~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 93 (269)
T PRK11831 15 FTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG-EILFDGENIPAMSRSRLYTVRKRMSMLFQSG 93 (269)
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEccccChhhHHHHhhcEEEEeccc
Confidence 445545556666677889999999999999999999999999988888 443221111 0 01123578888876
Q ss_pred hHHH
Q 019061 188 SVME 191 (346)
Q Consensus 188 ~~~~ 191 (346)
..+.
T Consensus 94 ~~~~ 97 (269)
T PRK11831 94 ALFT 97 (269)
T ss_pred ccCC
Confidence 5543
No 138
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=8.9e-10 Score=100.65 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=52.3
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeChhH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~~ 189 (346)
+.++...+..+.++.+.+|++++|+||||||||||+++|.+..++..| .+....... ......+.+|+++....
T Consensus 13 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 91 (237)
T PRK11614 13 AHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG-RIVFDGKDITDWQTAKIMREAVAIVPEGRRV 91 (237)
T ss_pred EeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-eEEECCEecCCCCHHHHHHhCEEEeccCccc
Confidence 344444455556677889999999999999999999999999998888 443222111 01122457888887655
Q ss_pred HH
Q 019061 190 ME 191 (346)
Q Consensus 190 ~~ 191 (346)
+.
T Consensus 92 ~~ 93 (237)
T PRK11614 92 FS 93 (237)
T ss_pred CC
Confidence 43
No 139
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.06 E-value=5.2e-11 Score=108.92 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=51.2
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhHHH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVME 191 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~~~ 191 (346)
++.+.+..+.++.+.+|++++|+||||||||||++.|++.+++..| .+..-..+.. .....+.+|+++...+|.
T Consensus 10 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~ 85 (237)
T TIGR00968 10 FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG-RIRLNGQDATRVHARDRKIGFVFQHYALFK 85 (237)
T ss_pred ECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCChhhcCEEEEecChhhcc
Confidence 3334455555677889999999999999999999999999988888 4432111111 111346788888766554
No 140
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.06 E-value=9.3e-10 Score=101.97 Aligned_cols=73 Identities=23% Similarity=0.217 Sum_probs=50.5
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSV 189 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~ 189 (346)
.++...++.+.++.+.+|++++|+||||||||||+++|++..++..| .+..-... .........+|+|+....
T Consensus 11 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (258)
T PRK13548 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG-EVRLNGRPLADWSPAELARRRAVLPQHSSL 87 (258)
T ss_pred EeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEcccCCHHHhhhheEEEccCCcC
Confidence 34444556666677889999999999999999999999999988888 44321111 111112357788877544
No 141
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.05 E-value=1.3e-09 Score=99.82 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=51.8
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc------ccccCCeeEEeeChhH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSV 189 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~g~~y~f~s~~~ 189 (346)
.++...+..+.+++..+|++++|+||||+|||||+++|++.+++..| .+........ .....+.+|+++....
T Consensus 10 ~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (240)
T PRK09493 10 HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG-DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYL 88 (240)
T ss_pred EECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCChhHHHHhhceEEEeccccc
Confidence 34444455566677889999999999999999999999999988888 4432211110 1112457888887654
Q ss_pred HH
Q 019061 190 ME 191 (346)
Q Consensus 190 ~~ 191 (346)
+.
T Consensus 89 ~~ 90 (240)
T PRK09493 89 FP 90 (240)
T ss_pred CC
Confidence 43
No 142
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.05 E-value=3.1e-11 Score=122.46 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=85.0
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeCh
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER 187 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~ 187 (346)
+.+.|+...+..+.++...+|++++|+||||||||||+++|.+..++..| .+....... ......+.+|+|+..
T Consensus 17 l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 95 (510)
T PRK15439 17 ISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG-TLEIGGNPCARLTPAKAHQLGIYLVPQEP 95 (510)
T ss_pred EEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHHHhCCEEEEeccC
Confidence 33455555566666677889999999999999999999999999988888 443221111 111123578998876
Q ss_pred hHHHHHHhccchhhhhhhhccccCCcHHHHHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 188 SVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
..+..+ ++.++..+.........+.+.+.++. +....++-.+..+..-++++......++..|++..+||++...
T Consensus 96 ~~~~~~----tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~L 171 (510)
T PRK15439 96 LLFPNL----SVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171 (510)
T ss_pred ccCCCC----cHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 554432 34444332211111111222222222 1111122222222222223333334444555555566666666
Q ss_pred CCCCHHHHHHHHHH
Q 019061 267 GTETEDQILKRLRN 280 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~ 280 (346)
|..+...+.+.+..
T Consensus 172 D~~~~~~l~~~l~~ 185 (510)
T PRK15439 172 TPAETERLFSRIRE 185 (510)
T ss_pred CHHHHHHHHHHHHH
Confidence 55455555555443
No 143
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.05 E-value=1.9e-09 Score=97.34 Aligned_cols=173 Identities=16% Similarity=0.144 Sum_probs=94.7
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-------ccccCCeeEEeeChhHHHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~g~~y~f~s~~~~~~ 192 (346)
..+....++...+|++++|+||||+|||||++.|.+.+++..| .+........ .....+++|.|+....+..
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG-SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 4455556677789999999999999999999999999988888 4432211110 1123568888887665542
Q ss_pred HHhccchhhhhhhhccccC-CcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCH
Q 019061 193 AIKDGKFLEFASVHGNLYG-TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (346)
Q Consensus 193 ~~~~~~~~e~~~~~~~~yg-~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~ 271 (346)
. +..++..+....++ ...+........ .+... .+.+.+.......+
T Consensus 97 ~----t~~~n~~~~~~~~~~~~~~~~~~~~~~--------------~l~~~---------------~l~~~~~~~~~~lS 143 (220)
T TIGR02982 97 L----TARQNVQMALELQPNLSYQEARERARA--------------MLEAV---------------GLGDHLDYYPHNLS 143 (220)
T ss_pred C----CHHHHHHHHHHhccCCCHHHHHHHHHH--------------HHHHc---------------CChhhhhcChhhCC
Confidence 2 44444443322221 111111110000 00000 01112222223346
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 272 DQILKRLRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 272 e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
.+.++|+..++..+.. ++.++.++ |.+. ...+.+++..+... .+.+++++.|+.+
T Consensus 144 ~G~~qrv~laral~~~------p~illlDEP~~~LD~~~-~~~l~~~l~~~~~~-~~~tii~~sh~~~ 203 (220)
T TIGR02982 144 GGQKQRVAIARALVHR------PKLVLADEPTAALDSKS-GRDVVELMQKLARE-QGCTILIVTHDNR 203 (220)
T ss_pred HHHHHHHHHHHHHhcC------CCEEEEeCCCCcCCHHH-HHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 7889999988866544 23444433 4433 45666677666432 2455557777765
No 144
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=4.9e-11 Score=110.08 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=52.7
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeChhH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~~ 189 (346)
+.++...+..+.++.+.+|++++|+||||||||||+++|++..++..| .+..-.... ......+.+|+|+....
T Consensus 13 ~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 91 (255)
T PRK11300 13 MRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG-TILLRGQHIEGLPGHQIARMGVVRTFQHVRL 91 (255)
T ss_pred EEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc-eEEECCEECCCCCHHHHHhcCeEEeccCccc
Confidence 445444556666677889999999999999999999999999998888 443211111 11112356778877655
Q ss_pred HHH
Q 019061 190 MEK 192 (346)
Q Consensus 190 ~~~ 192 (346)
+..
T Consensus 92 ~~~ 94 (255)
T PRK11300 92 FRE 94 (255)
T ss_pred CCC
Confidence 443
No 145
>PRK14529 adenylate kinase; Provisional
Probab=99.04 E-value=3.6e-09 Score=95.70 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=92.0
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCCcH
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSV 214 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~~~ 214 (346)
.++|+||+||||||+++.|...+... +.+.....|.... .+.. ....+...+.+|..+.... ..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~---~~t~----lg~~i~~~i~~G~lvpdei--------~~ 65 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIG---GGTE----LGKKAKEYIDRGDLVPDDI--------TI 65 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-Ccccchhhhhhcc---CCCh----HHHHHHHHHhccCcchHHH--------HH
Confidence 47899999999999999999876431 1112122221100 0000 0111222222222221110 01
Q ss_pred HHHHHHHH--hCCceEEEecHHHHHHHHc-------CCCCe-EEEEEcCCCHHHHHHHHHcC------------------
Q 019061 215 EAVEAVAD--AGKRCILDIDVQGARSVRA-------SPLDA-IFIFICPPSMEELEERLRAR------------------ 266 (346)
Q Consensus 215 ~~i~~~~~--~~~~~iLD~~~~~~~~l~~-------~~~~~-~~ill~~p~~~~l~eRL~~R------------------ 266 (346)
..+.+.+. ....++||++|....|... ....+ .++++.. +.+++.+|+.+|
T Consensus 66 ~lv~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~-~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p 144 (223)
T PRK14529 66 PMILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILL-PREVAKNRIMGRRLCKNDNNHPNNIFIDAI 144 (223)
T ss_pred HHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHhhCCccccccCCcccccccCCC
Confidence 11222221 1467899998887666531 12222 3344443 367777777654
Q ss_pred -----------------CCCC-HHHHHHHHHHHHHH-------HHhccC-----CCCceEEEcCCCHHHHHHHHHHHH
Q 019061 267 -----------------GTET-EDQILKRLRNAKEE-------IKQGKS-----SGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 267 -----------------~~~~-~e~i~~Rl~~~~~~-------i~~~~~-----~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
.||+ ++.+++|++.|.++ +++|.. .+.+..|.++.+++++++.+.+.+
T Consensus 145 ~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 145 KPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred cccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 3565 68999999999975 346653 567888899999999999887654
No 146
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.04 E-value=3.5e-09 Score=95.08 Aligned_cols=90 Identities=30% Similarity=0.261 Sum_probs=63.0
Q ss_pred CCceEEEecHHHHHHHH---cCCC--CeEEEEEcCCCHHHHHHHHHcC--------------------------------
Q 019061 224 GKRCILDIDVQGARSVR---ASPL--DAIFIFICPPSMEELEERLRAR-------------------------------- 266 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l~---~~~~--~~~~ill~~p~~~~l~eRL~~R-------------------------------- 266 (346)
...++||+.|....+.. .... ...++++..| .+.+.+|+.+|
T Consensus 78 ~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~ 156 (210)
T TIGR01351 78 ENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVP-DEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQ 156 (210)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECC-HHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCcccc
Confidence 46799999877655442 2221 2234444443 67777777665
Q ss_pred -CCCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHH
Q 019061 267 -GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 267 -~~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
.+++++.+++|++.|.+. +++|...+.+..|.++.+++++++.+.+.+
T Consensus 157 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 157 REDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 356789999999999876 556655567888889999999999887764
No 147
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.04 E-value=2.6e-11 Score=112.80 Aligned_cols=75 Identities=20% Similarity=0.119 Sum_probs=52.6
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~ 190 (346)
+.++...+..+.++...+|++++|+||||||||||+++|++.+++..| .+...... .........+|+|+....+
T Consensus 15 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 93 (265)
T PRK10253 15 LGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG-HVWLDGEHIQHYASKEVARRIGLLAQNATTP 93 (265)
T ss_pred EEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc-EEEECCEEhhhCCHHHHhhheEEeeccCcCC
Confidence 445555566667778889999999999999999999999999988888 44321111 1111123577888876544
No 148
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=1.7e-11 Score=110.21 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=50.8
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--------cccccCCeeEEe
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHF 184 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~g~~y~f 184 (346)
+.++||...+ +.++...+ ++++|+||||+|||||+++|.+.+++..| .+....... ........+|++
T Consensus 6 l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 81 (214)
T cd03297 6 IEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGG-TIVLNGTVLFDSRKKINLPPQQRKIGLVF 81 (214)
T ss_pred eeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEecccccchhhhhhHhhcEEEEe
Confidence 3456666544 56677788 99999999999999999999999988888 332211110 001124577888
Q ss_pred eChhHHH
Q 019061 185 TERSVME 191 (346)
Q Consensus 185 ~s~~~~~ 191 (346)
+...++.
T Consensus 82 q~~~~~~ 88 (214)
T cd03297 82 QQYALFP 88 (214)
T ss_pred cCCccCC
Confidence 7765443
No 149
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.04 E-value=3.2e-11 Score=122.10 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=54.5
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeCh
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTER 187 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~ 187 (346)
+.+.|+...+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+...... .......+.+|+|+..
T Consensus 10 l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 88 (501)
T PRK10762 10 IDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAG-SILYLGKEVTFNGPKSSQEAGIGIIHQEL 88 (501)
T ss_pred eEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhCCEEEEEcch
Confidence 33455545556666677889999999999999999999999999988888 44321111 1111124588999876
Q ss_pred hHHHH
Q 019061 188 SVMEK 192 (346)
Q Consensus 188 ~~~~~ 192 (346)
..+..
T Consensus 89 ~~~~~ 93 (501)
T PRK10762 89 NLIPQ 93 (501)
T ss_pred hccCC
Confidence 55443
No 150
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.04 E-value=7.6e-09 Score=93.25 Aligned_cols=91 Identities=22% Similarity=0.203 Sum_probs=63.4
Q ss_pred CceEEEecHHHHHHHH-------cCCCCe-EEEEEcCCCHHHHHHHHHcC------------------------------
Q 019061 225 KRCILDIDVQGARSVR-------ASPLDA-IFIFICPPSMEELEERLRAR------------------------------ 266 (346)
Q Consensus 225 ~~~iLD~~~~~~~~l~-------~~~~~~-~~ill~~p~~~~l~eRL~~R------------------------------ 266 (346)
..++||+.|....+.. .....+ ..+++.. +.+.+.+|+..|
T Consensus 79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l 157 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDV-PDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEEL 157 (215)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEEC-CHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcc
Confidence 4789998776654432 222233 3344444 467777777765
Q ss_pred ---CCCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHH
Q 019061 267 ---GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 267 ---~~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
.+++++.+++|+..|... +++|...+.+..|.++.+++++++.+...+..
T Consensus 158 ~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 158 IQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred cCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 467899999999999865 55555556678899999999999998887754
No 151
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.04 E-value=5.9e-11 Score=109.14 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=50.0
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC-----ccceeeecCCcc------cccccCCeeEEee
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRAP------RAMEKDGVHYHFT 185 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~-----~g~~i~~ttr~~------~~~~~~g~~y~f~ 185 (346)
++...+..+.++.+.+|++++|+|+||||||||+++|.+..++. .| .+..-.... ......+.+|+|+
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q 89 (247)
T TIGR00972 11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG-KVLFDGQDIYDKKIDVVELRRRVGMVFQ 89 (247)
T ss_pred ECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCce-EEEECCEEccccccchHHHHhheEEEec
Confidence 33334445556778899999999999999999999999999876 67 443211111 1111346889888
Q ss_pred ChhHHH
Q 019061 186 ERSVME 191 (346)
Q Consensus 186 s~~~~~ 191 (346)
....+.
T Consensus 90 ~~~~~~ 95 (247)
T TIGR00972 90 KPNPFP 95 (247)
T ss_pred CcccCC
Confidence 765443
No 152
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.04 E-value=1.7e-09 Score=99.72 Aligned_cols=46 Identities=30% Similarity=0.356 Sum_probs=38.5
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
++...+..+.++.+.+|++++|+||||||||||+++|++.+++..|
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (252)
T TIGR03005 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEG 55 (252)
T ss_pred eCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3434455556677889999999999999999999999999988888
No 153
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.5e-09 Score=101.51 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=47.4
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~ 187 (346)
.+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+....... ........+|+|+..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 88 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG-RVKVMGREVNAENEKWVRSKVGLVFQDP 88 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce-EEEECCEECCCCCHHHHHhhEEEEecCh
Confidence 345555677789999999999999999999999999988888 443222111 111124578999875
No 154
>PRK14528 adenylate kinase; Provisional
Probab=99.03 E-value=3.7e-09 Score=93.27 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=63.5
Q ss_pred CCceEEEecHHHHHHHH-------cCCCCe-EEEEEcCCCHHHHHHHHHcC------CCCCHHHHHHHHHHHHHH----H
Q 019061 224 GKRCILDIDVQGARSVR-------ASPLDA-IFIFICPPSMEELEERLRAR------GTETEDQILKRLRNAKEE----I 285 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l~-------~~~~~~-~~ill~~p~~~~l~eRL~~R------~~~~~e~i~~Rl~~~~~~----i 285 (346)
...+++|+.|....+.. .....+ .++++.. +.+.+.+|+..| .+++++.+++|+..|.++ +
T Consensus 79 ~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~-~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~ 157 (186)
T PRK14528 79 KNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEV-PDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLL 157 (186)
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence 35689999877654442 112223 3344444 467888998865 367899999999999876 7
Q ss_pred HhccCCCCceEEEcCCCHHHHHHHHHH
Q 019061 286 KQGKSSGIFDHILYNDKLEECYENLKV 312 (346)
Q Consensus 286 ~~~~~~~~~~~Vi~n~~le~~~~~l~~ 312 (346)
++|...+.+..+.++.++++++..+.+
T Consensus 158 ~~y~~~~~~~~i~~~~~~~~v~~~~~~ 184 (186)
T PRK14528 158 DFYAAQKKLSQVNGVGSLEEVTSLIQK 184 (186)
T ss_pred HHHHhCCCEEEEECCCCHHHHHHHHHH
Confidence 777777788899999999999887664
No 155
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.8e-09 Score=98.99 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=52.0
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----------cccccCCeeEEee
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----------RAMEKDGVHYHFT 185 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----------~~~~~~g~~y~f~ 185 (346)
.++...+..+.++...+|++++|+||||||||||+++|++..++..| .+....... ......+++|+++
T Consensus 11 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 89 (242)
T PRK11124 11 FYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSG-TLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQ 89 (242)
T ss_pred EECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecccccccchhhHHHHHhheEEEec
Confidence 34434455666677889999999999999999999999999988888 443322110 0111245788888
Q ss_pred ChhHHH
Q 019061 186 ERSVME 191 (346)
Q Consensus 186 s~~~~~ 191 (346)
....+.
T Consensus 90 ~~~~~~ 95 (242)
T PRK11124 90 QYNLWP 95 (242)
T ss_pred CccccC
Confidence 765543
No 156
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=5.6e-11 Score=112.05 Aligned_cols=65 Identities=23% Similarity=0.185 Sum_probs=47.4
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--------cccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~g~~y~f~s~ 187 (346)
++.+.++.+.+|++++|+||||||||||+++|++..++..| .+..-.... .......++|+|+..
T Consensus 22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 94 (290)
T PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG-TVTIGERVITAGKKNKKLKPLRKKVGIVFQFP 94 (290)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHHHHHhhEEEEeeCc
Confidence 44555677889999999999999999999999999998888 443211111 111224688999975
No 157
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.03 E-value=4.5e-11 Score=106.29 Aligned_cols=177 Identities=17% Similarity=0.110 Sum_probs=93.0
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhHHHH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~~~~ 192 (346)
.++...+..+.++.+.+|++++|+||||+|||||++.|.+.+++..| .+....... ........+|.++....+..
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (198)
T TIGR01189 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG-EVRWNGTALAEQRDEPHRNILYLGHLPGLKPE 87 (198)
T ss_pred EECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccchHHhhhheEEeccCcccccC
Confidence 34444555666677889999999999999999999999999988888 443211111 11112346677765433322
Q ss_pred HHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHH
Q 019061 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (346)
Q Consensus 193 ~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e 272 (346)
. +..++..+....++.....+.+.++. .. +.+.+.......+.
T Consensus 88 ~----tv~~~l~~~~~~~~~~~~~~~~~l~~------------------~~---------------l~~~~~~~~~~LS~ 130 (198)
T TIGR01189 88 L----SALENLHFWAAIHGGAQRTIEDALAA------------------VG---------------LTGFEDLPAAQLSA 130 (198)
T ss_pred C----cHHHHHHHHHHHcCCcHHHHHHHHHH------------------cC---------------CHHHhcCChhhcCH
Confidence 1 33343332211111111112222111 00 00011111123467
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 273 ~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+.++|+..++..+... ..-++|+....-|.. ..+.+.+++..+.. .+.+++.+.|++.
T Consensus 131 G~~qrv~la~al~~~p-~llllDEPt~~LD~~-~~~~l~~~l~~~~~--~~~tii~~sH~~~ 188 (198)
T TIGR01189 131 GQQRRLALARLWLSRA-PLWILDEPTTALDKA-GVALLAGLLRAHLA--RGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHHHHHhcCC-CEEEEeCCCcCCCHH-HHHHHHHHHHHHHh--CCCEEEEEEcccc
Confidence 8899999988776541 111223333333554 34567777776642 2445546777553
No 158
>PLN02200 adenylate kinase family protein
Probab=99.02 E-value=1.5e-08 Score=92.68 Aligned_cols=169 Identities=18% Similarity=0.206 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
...+++|+|++||||||+++.|+..+.. ..-.+....+.. ..+.. .....+...+. .+..++
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~----~his~gdllR~~-i~~~s---~~~~~i~~~~~----------~G~~vp 103 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGF----KHLSAGDLLRRE-IASNS---EHGAMILNTIK----------EGKIVP 103 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCC----eEEEccHHHHHH-HhccC---hhHHHHHHHHH----------cCCCCc
Confidence 4568999999999999999999886531 111111111110 00000 00000111111 122222
Q ss_pred CcH--HHHHHHHH--hCCceEEEecHHHHHHHH---cC-CCCe-EEEEEcCCCHHHHHHHHHcC----CCCCHHHHHHHH
Q 019061 212 TSV--EAVEAVAD--AGKRCILDIDVQGARSVR---AS-PLDA-IFIFICPPSMEELEERLRAR----GTETEDQILKRL 278 (346)
Q Consensus 212 ~~~--~~i~~~~~--~~~~~iLD~~~~~~~~l~---~~-~~~~-~~ill~~p~~~~l~eRL~~R----~~~~~e~i~~Rl 278 (346)
... ..+.+.+. ....++||+.|....+.. .. ...+ .++++..+ .+++.+|+..| .+++.+.+++|+
T Consensus 104 ~e~~~~~l~~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~-~e~~~~Rl~~R~~~r~dd~~e~~~~Rl 182 (234)
T PLN02200 104 SEVTVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCP-EEEMVKRVLNRNQGRVDDNIDTIKKRL 182 (234)
T ss_pred HHHHHHHHHHHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECC-HHHHHHHHHcCcCCCCCCCHHHHHHHH
Confidence 110 11122222 235689999887655432 21 1223 34444443 67888898876 356788999999
Q ss_pred HHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhc
Q 019061 279 RNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQ 319 (346)
Q Consensus 279 ~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~ 319 (346)
+.|.+. +++|...+.+..|.++.+++++++.+.+.+.....
T Consensus 183 ~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 183 KVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 998876 55554455677888888999999999988876643
No 159
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.02 E-value=4.5e-11 Score=106.47 Aligned_cols=73 Identities=10% Similarity=0.079 Sum_probs=49.9
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~ 189 (346)
.++...+....++...+|++++|+||||+|||||+++|++..++..| .+....... ........+|+++....
T Consensus 10 ~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~i~~~~q~~~~ 85 (200)
T PRK13540 10 DYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG-EILFERQSIKKDLCTYQKQLCFVGHRSGI 85 (200)
T ss_pred EeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-eEEECCCccccCHHHHHhheEEecccccc
Confidence 34444455666677889999999999999999999999999988888 443221111 11122456777765443
No 160
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=4.9e-11 Score=111.53 Aligned_cols=66 Identities=18% Similarity=0.075 Sum_probs=47.8
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeChh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS 188 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~ 188 (346)
++.+.++.+.+|++++|+||||+|||||+++|++.+++..| .+....... ........+|+|+...
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 87 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG-KVLVSGIDTGDFSKLQGIRKLVGIVFQNPE 87 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEECCccccHHHHHhheEEEEEChh
Confidence 45556677889999999999999999999999999998888 443221111 0111245788888754
No 161
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.01 E-value=2.3e-08 Score=87.48 Aligned_cols=90 Identities=22% Similarity=0.361 Sum_probs=59.8
Q ss_pred CCceEEEecHHHHHHHH------cCCCC-eEEEEEcCCCHHHHHHHHHcCC------CCCHHHHHHHHHHHHHH----HH
Q 019061 224 GKRCILDIDVQGARSVR------ASPLD-AIFIFICPPSMEELEERLRARG------TETEDQILKRLRNAKEE----IK 286 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l~------~~~~~-~~~ill~~p~~~~l~eRL~~R~------~~~~e~i~~Rl~~~~~~----i~ 286 (346)
+..++||+.|....+.. ..... ..++++.. +.+.+.+|+..|+ +++.+.+++|+..|.+. ++
T Consensus 76 ~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~-~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~ 154 (183)
T TIGR01359 76 SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDC-PEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIE 154 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56799999776544332 11122 23444444 4688889998875 34688999999988765 44
Q ss_pred hccCCCCceEEEcCCCHHHHHHHHHHHH
Q 019061 287 QGKSSGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 287 ~~~~~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
+|...+.+..|.++.+++++++.+.+++
T Consensus 155 ~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 155 HYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4444445667888889999888877654
No 162
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.01 E-value=9.8e-11 Score=108.93 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=48.4
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cc--cccCCeeEEeeCh
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RA--MEKDGVHYHFTER 187 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~--~~~~g~~y~f~s~ 187 (346)
..++.+.++.+.+|++++|+||||||||||+++|.+.+++..| .+....... .. .....++|+|+..
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 97 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG-TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDS 97 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEccccCHHHHHHHhhceEEEecCh
Confidence 4456666677889999999999999999999999999998888 443211111 00 1124578888875
No 163
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=6.1e-11 Score=111.68 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=47.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--------cccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~g~~y~f~s~ 187 (346)
+..+.++.+.+|++++|+||||||||||+++|.+.+++..| .+....... .......++|+|+..
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 93 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG-KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP 93 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-EEEECCEECccccccccHHHHHhhEEEEecCc
Confidence 44455677889999999999999999999999999999888 443221111 111234688999875
No 164
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=2e-09 Score=100.99 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=47.1
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~ 187 (346)
++.+.++.+.+|++++|+||||||||||+++|++.+++..| .+..-... .........+|+|+..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 90 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG-QIIIDGDLLTEENVWDIRHKIGMVFQNP 90 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHHHHhhceEEEcCh
Confidence 45556677889999999999999999999999999998888 44321111 1111124578999875
No 165
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=6e-09 Score=97.20 Aligned_cols=77 Identities=18% Similarity=0.118 Sum_probs=52.0
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCcc------cccccCCeeE
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHY 182 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~g~~y 182 (346)
.+.++...++.+.++.+.+|++++|+||||||||||+++|++..+ +..| .+....... ........+|
T Consensus 20 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G-~v~~~g~~i~~~~~~~~~~~~~i~~ 98 (269)
T PRK14259 20 TISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKG-RVLFDGTDLYDPRVDPVEVRRRIGM 98 (269)
T ss_pred EEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEcccccCCHHHHhhceEE
Confidence 344554556666677888999999999999999999999999876 3566 443211110 1111245788
Q ss_pred EeeChhHHH
Q 019061 183 HFTERSVME 191 (346)
Q Consensus 183 ~f~s~~~~~ 191 (346)
+|+...++.
T Consensus 99 v~q~~~l~~ 107 (269)
T PRK14259 99 VFQQPNPFP 107 (269)
T ss_pred EccCCccch
Confidence 888765553
No 166
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.00 E-value=9.2e-10 Score=101.87 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=40.6
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
...++...+..+.++.+.+|++++|+||||+|||||+++|.+..++..|
T Consensus 12 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 60 (257)
T PRK10619 12 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 60 (257)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3444445556666677889999999999999999999999999988888
No 167
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=7.3e-11 Score=109.07 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=51.8
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVM 190 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~ 190 (346)
++++...+..+.++...+|++++|+|+||||||||+++|++.+++..| .+........ .......+|+|+....+
T Consensus 10 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (255)
T PRK11231 10 VGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG-TVFLGDKPISMLSSRQLARRLALLPQHHLTP 88 (255)
T ss_pred EEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-EEEECCEEhHHCCHHHHhhheEEecccCCCC
Confidence 345545566666677889999999999999999999999999988888 4432221111 01123477888875443
No 168
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.00 E-value=7.9e-11 Score=104.48 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=38.6
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
++...+.. .++...+|++++|+|+||||||||+++|++..++..| .+.
T Consensus 11 ~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~ 58 (195)
T PRK13541 11 IEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG-NIY 58 (195)
T ss_pred ECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEE
Confidence 33333433 5667789999999999999999999999999998888 444
No 169
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.00 E-value=2.5e-09 Score=96.13 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=46.4
Q ss_pred ccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhHHH
Q 019061 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVME 191 (346)
Q Consensus 125 ~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~~~ 191 (346)
+.++...+|++++|+||||+|||||+++|++..++..| .+..-..... .......+|+|+....+.
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 83 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG-SIKVNDQSHTGLAPYQRPVSMLFQENNLFA 83 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEcccCChhccceEEEeccCccCC
Confidence 34466779999999999999999999999999998888 4432111110 011245778888765554
No 170
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=1.4e-09 Score=103.19 Aligned_cols=42 Identities=26% Similarity=0.181 Sum_probs=36.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~ 163 (346)
++.+.++.+.+|++++|+||||||||||+++|++.+++..|.
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~ 63 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGT 63 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 444455677899999999999999999999999999988883
No 171
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=2.3e-09 Score=100.87 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=47.1
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--------cccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~g~~y~f~s~ 187 (346)
++.+.++.+.+|++++|+||||||||||+++|++..++..| .+..-.... .......++|+|+..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~ 94 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG-TVTVDDITITHKTKDKYIRPVRKRIGMVFQFP 94 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHHHHHhheEEEecCh
Confidence 45555667789999999999999999999999999999888 443211110 011234688999975
No 172
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=3.4e-09 Score=98.57 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=53.1
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChh
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS 188 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~ 188 (346)
+.+.++...++.+.++...+|++++|+||||||||||+++|++.+++..| .+...... .........+|+|+...
T Consensus 17 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 95 (265)
T PRK10575 17 VSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG-EILLDAQPLESWSSKAFARKVAYLPQQLP 95 (265)
T ss_pred EEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCEehhhCCHHHHhhheEEeccCCC
Confidence 33445545566667778889999999999999999999999999988888 44322211 11111235778887654
Q ss_pred HH
Q 019061 189 VM 190 (346)
Q Consensus 189 ~~ 190 (346)
.+
T Consensus 96 ~~ 97 (265)
T PRK10575 96 AA 97 (265)
T ss_pred CC
Confidence 43
No 173
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.99 E-value=9.1e-11 Score=104.64 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=48.5
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~ 189 (346)
++...+....++.+.+|++++|+|+||+|||||+++|.+..++..| .+....... ......+.+|+++....
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (201)
T cd03231 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-RVLLNGGPLDFQRDSIARGLLYLGHAPGI 84 (201)
T ss_pred eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccccHHhhhheEEecccccc
Confidence 4444445555677789999999999999999999999999988888 443211111 11122456777765433
No 174
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=1.9e-09 Score=101.56 Aligned_cols=65 Identities=15% Similarity=0.062 Sum_probs=47.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--------cccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~g~~y~f~s~ 187 (346)
+..+.+++..+|++++|+||||+|||||+++|++..++..| .+..-.+.. ......+++|+|+..
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~ 94 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG-TITIAGYHITPETGNKNLKKLRKKVSLVFQFP 94 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHHHHHhceEEEEeCh
Confidence 45556677889999999999999999999999999999888 443211111 111224688999875
No 175
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=1.8e-10 Score=106.04 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=54.9
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecC----CcccccccCCeeEEee
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTT----RAPRAMEKDGVHYHFT 185 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~tt----r~~~~~~~~g~~y~f~ 185 (346)
+.++...+..+.++.+.+|++++|+||||||||||+++|.+..++ ..| .+.... +........+++|+|+
T Consensus 11 ~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q 89 (250)
T PRK14247 11 VSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG-EVYLDGQDIFKMDVIELRRRVQMVFQ 89 (250)
T ss_pred EEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCce-EEEECCEECCcCCHHHHhccEEEEec
Confidence 344444555666677889999999999999999999999999864 466 443211 1111112346789988
Q ss_pred ChhHHHHHHhccchhhhhh
Q 019061 186 ERSVMEKAIKDGKFLEFAS 204 (346)
Q Consensus 186 s~~~~~~~~~~~~~~e~~~ 204 (346)
....+... ++.++..
T Consensus 90 ~~~~~~~~----tv~enl~ 104 (250)
T PRK14247 90 IPNPIPNL----SIFENVA 104 (250)
T ss_pred cCccCCCC----cHHHHHH
Confidence 76544332 4455543
No 176
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=1.2e-10 Score=109.18 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=48.3
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeChh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS 188 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~ 188 (346)
.+..+.++.+.+|++++|+||||||||||+++|.+.+++..| .+..-.... ........+|+|+...
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~ 95 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG-KVYVDGLDTSDEENLWDIRNKAGMVFQNPD 95 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEeccccccHHHHhhheEEEecChh
Confidence 355556677889999999999999999999999999998888 443211111 0111345788888753
No 177
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.98 E-value=6.5e-11 Score=120.06 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=54.1
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----c-cccccCCeeEEeeCh
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----P-RAMEKDGVHYHFTER 187 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~-~~~~~~g~~y~f~s~ 187 (346)
+.+.|+...+..+.++.+.+|++++|+||||||||||+++|++..++..| .+...... . ......+.+|+|+..
T Consensus 11 l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 89 (510)
T PRK09700 11 IGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG-TITINNINYNKLDHKLAAQLGIGIIYQEL 89 (510)
T ss_pred eEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCcc-EEEECCEECCCCCHHHHHHCCeEEEeecc
Confidence 34455545556666778889999999999999999999999999988888 44321111 1 111124588998876
Q ss_pred hHHH
Q 019061 188 SVME 191 (346)
Q Consensus 188 ~~~~ 191 (346)
..+.
T Consensus 90 ~~~~ 93 (510)
T PRK09700 90 SVID 93 (510)
T ss_pred cccC
Confidence 5544
No 178
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.98 E-value=6e-11 Score=107.97 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=43.2
Q ss_pred CccCCCCCeEEEEcCCCCChHHHHHhhccccCC----CccceeeecCCcccc-cc-cCCeeEEeeChh
Q 019061 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS----MFGFSVSHTTRAPRA-ME-KDGVHYHFTERS 188 (346)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~----~~g~~i~~ttr~~~~-~~-~~g~~y~f~s~~ 188 (346)
++.+.+|++++|+||||||||||+++|++..++ ..| .+......... .. ....+|+++...
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~ 72 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSG-EILLDGRPLLPLSIRGRHIATIMQNPR 72 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcccc-EEEECCEechhhhhhhheeEEEecCch
Confidence 345678999999999999999999999999987 677 44332221111 11 135788888753
No 179
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=2.5e-09 Score=99.74 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=47.8
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc------cccccCCeeEEeeChh
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERS 188 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~g~~y~f~s~~ 188 (346)
..+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+....... .......++|+|+...
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 87 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKG-AVLWQGKPLDYSKRGLLALRQQVATVFQDPE 87 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCcc-EEEECCEEcccccCCHHHHHhheEEEeeChh
Confidence 3344455567789999999999999999999999999998888 443221111 0111245788888754
No 180
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=8.8e-11 Score=109.45 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=47.4
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS 188 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~ 188 (346)
+..+.++.+.+|++++|+||||+|||||+++|++.+++..| .+...... .........+|+|+...
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 93 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG-EIFYNNQAITDDNFEKLRKHIGIVFQNPD 93 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhheeEEEeChH
Confidence 44455667789999999999999999999999999988888 44322211 11112245788888753
No 181
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=3.7e-09 Score=99.00 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=47.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~ 187 (346)
+..+.++.+.+|++++|+|+||||||||+++|++.+++..| .+..-... .........+|+|+..
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 87 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG-SVLIRGEPITKENIREVRKFVGLVFQNP 87 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhheEEEecCc
Confidence 45556677889999999999999999999999999998888 44321111 1111124578888875
No 182
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=1.1e-10 Score=108.25 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=50.7
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCc----c--cccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRA----P--RAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~----~--~~~~~~g~~y~ 183 (346)
+.++...+..+.++.+.+|++++|+|+||||||||+++|.+..++ ..| .+..-... . ......+.+|+
T Consensus 20 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v 98 (258)
T PRK14268 20 LWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG-KVSIEGEDIYEPDVDVVELRKNVGMV 98 (258)
T ss_pred EEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcce-EEEECCEEcccccchHHHHhhhEEEE
Confidence 334444555556677889999999999999999999999998764 466 44321111 0 11112457888
Q ss_pred eeChhHHH
Q 019061 184 FTERSVME 191 (346)
Q Consensus 184 f~s~~~~~ 191 (346)
|+....+.
T Consensus 99 ~q~~~~~~ 106 (258)
T PRK14268 99 FQKPNPFP 106 (258)
T ss_pred ecCCccCc
Confidence 88765543
No 183
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=1.2e-10 Score=109.23 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=46.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--------cccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~g~~y~f~s~ 187 (346)
+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+....... .......++|+++..
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~ 94 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG-SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFP 94 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccCHHHHHhheEEEeeCh
Confidence 44445567789999999999999999999999999988888 443211111 011124578888875
No 184
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=8.7e-11 Score=119.05 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=86.3
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC--CccceeeecCCcc-----cccccCCeeEEee
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAP-----RAMEKDGVHYHFT 185 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~--~~g~~i~~ttr~~-----~~~~~~g~~y~f~ 185 (346)
+.+.|+...+..+.++...+|++++|+||||||||||+++|++..++ ..| .+....... ......+.+|+|+
T Consensus 11 l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q 89 (506)
T PRK13549 11 ITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEG-EIIFEGEELQASNIRDTERAGIAIIHQ 89 (506)
T ss_pred eEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCCCCHHHHHHCCeEEEEe
Confidence 34455555566666777889999999999999999999999999875 567 443211111 1111245889998
Q ss_pred ChhHHHHHHhccchhhhhhhhcccc--C-CcH----HHHHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHH
Q 019061 186 ERSVMEKAIKDGKFLEFASVHGNLY--G-TSV----EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSME 257 (346)
Q Consensus 186 s~~~~~~~~~~~~~~e~~~~~~~~y--g-~~~----~~i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~ 257 (346)
....+..+ ++.++..+....+ + ... +.+.+.++. +..-.++-.+..+..-++++.....+++..|++.
T Consensus 90 ~~~~~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll 165 (506)
T PRK13549 90 ELALVKEL----SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLL 165 (506)
T ss_pred ccccCCCC----cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 86554433 4444443322111 1 111 122222222 1111122222222222333333344455555556
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH
Q 019061 258 ELEERLRARGTETEDQILKRLRN 280 (346)
Q Consensus 258 ~l~eRL~~R~~~~~e~i~~Rl~~ 280 (346)
.+||+..+.|..+...+.+.+..
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 166 ILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHH
Confidence 66666666655444555554443
No 185
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.98 E-value=5.4e-11 Score=108.90 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=50.7
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc--CCCccceeeecCCcc-----cccccCCeeEEeeCh
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER 187 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~--~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~ 187 (346)
+.++...+..+.++.+.+|++++|+||||||||||+++|++.. ++..| .+..-.... ......+.+|+++..
T Consensus 8 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (243)
T TIGR01978 8 VSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSG-TILFKGQDLLELEPDERARAGLFLAFQYP 86 (243)
T ss_pred EEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc-eEEECCEecCCCCHHHhhccceEeeeccc
Confidence 3444445566667788899999999999999999999999984 56677 443211111 111123467887776
Q ss_pred hHHH
Q 019061 188 SVME 191 (346)
Q Consensus 188 ~~~~ 191 (346)
..+.
T Consensus 87 ~~~~ 90 (243)
T TIGR01978 87 EEIP 90 (243)
T ss_pred cccC
Confidence 5543
No 186
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=8.9e-11 Score=102.69 Aligned_cols=43 Identities=26% Similarity=0.255 Sum_probs=36.9
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
..+....+++..+|++++|+||||+|||||+++|.+.+++..|
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG 55 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3445555677889999999999999999999999999988777
No 187
>PRK14532 adenylate kinase; Provisional
Probab=98.97 E-value=1.2e-08 Score=89.81 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=62.5
Q ss_pred hCCceEEEecHHHHHHHH-------cCCCCe-EEEEEcCCCHHHHHHHHHcC------CCCCHHHHHHHHHHHHHH----
Q 019061 223 AGKRCILDIDVQGARSVR-------ASPLDA-IFIFICPPSMEELEERLRAR------GTETEDQILKRLRNAKEE---- 284 (346)
Q Consensus 223 ~~~~~iLD~~~~~~~~l~-------~~~~~~-~~ill~~p~~~~l~eRL~~R------~~~~~e~i~~Rl~~~~~~---- 284 (346)
.+..+++|+.|....+.. .....+ .++++..| .+.+.+|+..| .+++.+.+++|+..+..+
T Consensus 77 ~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i 155 (188)
T PRK14532 77 AAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPL 155 (188)
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456899999877555432 222333 34444444 67888888766 345678899999998765
Q ss_pred HHhccCCCCceEEEcCCCHHHHHHHHHHHHH
Q 019061 285 IKQGKSSGIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 285 i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
+.+|...+.+..+.++.+++++++++.+.+.
T Consensus 156 ~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 156 LPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 3455545556677788899999998887764
No 188
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=1.1e-08 Score=98.00 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=47.4
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----cc--ccccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PR--AMEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~--~~~~~g~~y~f~s~ 187 (346)
.++.+.++.+.+|++++|+|+||||||||+++|.+.+++..| .+..-... .+ ......++|+|++.
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G-~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~ 101 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGG-ELYYQGQDLLKADPEAQKLLRQKIQIVFQNP 101 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc-EEEECCEEcCcCCHHHHHHHhCCEEEEEcCc
Confidence 345556677889999999999999999999999999988777 44321111 00 01124588999885
No 189
>PRK04040 adenylate kinase; Provisional
Probab=98.97 E-value=3.2e-08 Score=87.48 Aligned_cols=74 Identities=27% Similarity=0.277 Sum_probs=52.6
Q ss_pred HcCCCCeEEEEEcCCCHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHhc-cCCCCceEEEcCCC--HHHHHHHHHH
Q 019061 240 RASPLDAIFIFICPPSMEELEERLRA----RGTETEDQILKRLRNAKEEIKQG-KSSGIFDHILYNDK--LEECYENLKV 312 (346)
Q Consensus 240 ~~~~~~~~~ill~~p~~~~l~eRL~~----R~~~~~e~i~~Rl~~~~~~i~~~-~~~~~~~~Vi~n~~--le~~~~~l~~ 312 (346)
+...+...+++..+| .+++.+|+.. |+.++.+.++.+++..+.....+ ...+.++.++.|++ +++++.++..
T Consensus 107 ~~l~pd~ii~l~a~p-~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ 185 (188)
T PRK04040 107 EELNPDVIVLIEADP-DEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVE 185 (188)
T ss_pred hhcCCCEEEEEeCCH-HHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 344444444444444 5788888864 77788999999998887654432 23466899999999 9999998887
Q ss_pred HH
Q 019061 313 IC 314 (346)
Q Consensus 313 iI 314 (346)
+|
T Consensus 186 ii 187 (188)
T PRK04040 186 VL 187 (188)
T ss_pred Hh
Confidence 65
No 190
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.97 E-value=3.3e-09 Score=109.42 Aligned_cols=176 Identities=11% Similarity=0.066 Sum_probs=102.9
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKD 196 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~ 196 (346)
.+..+.++...+|+.++|+||||||||||++.|.+.+ |..| .|.....+.. ...++.++|++|...+|..
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G-~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~---- 437 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG-SLKINGIELRELDPESWRKHLSWVGQNPQLPHG---- 437 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc-EEEECCEecccCCHHHHHhheEEecCCCcCCCc----
Confidence 3445566778899999999999999999999999999 7778 5543221111 1123468899888766643
Q ss_pred cchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHH-HHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHH
Q 019061 197 GKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS-VRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (346)
Q Consensus 197 ~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~-l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~ 275 (346)
+..++..+... ..+.+.+.++++... +.. +... ++.++..+..+|..-+++.+
T Consensus 438 -TI~eNI~~g~~--~~~~eei~~al~~a~----------l~~~i~~l-------------p~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 438 -TLRDNVLLGNP--DASDEQLQQALENAW----------VSEFLPLL-------------PQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred -CHHHHhhcCCC--CCCHHHHHHHHHHhC----------HHHHHHhc-------------ccccccccccCCCCCCHHHH
Confidence 66777665421 123344444433211 110 1100 12344556666767789999
Q ss_pred HHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccc
Q 019061 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYP 333 (346)
Q Consensus 276 ~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~ 333 (346)
||+..+++.+... +.-++|+...+-|.+. .+.+.+.+.++. ++.+.+.+.|.+
T Consensus 492 QRialARAll~~~-~IliLDE~TSaLD~~t-e~~i~~~l~~~~---~~~TvIiItHrl 544 (588)
T PRK11174 492 QRLALARALLQPC-QLLLLDEPTASLDAHS-EQLVMQALNAAS---RRQTTLMVTHQL 544 (588)
T ss_pred HHHHHHHHHhcCC-CEEEEeCCccCCCHHH-HHHHHHHHHHHh---CCCEEEEEecCh
Confidence 9999999887652 1112233333334433 344555555552 344554666644
No 191
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=2.9e-09 Score=100.01 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=48.0
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc------cccccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~g~~y~f~s~ 187 (346)
.+..+.++.+.+|++++|+||||+|||||+++|++..++..| .+....... ........+|+|+..
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G-~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~ 91 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG-RILFDGKPIDYSRKGLMKLRESVGMVFQDP 91 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcc-EEEECCEECCCCcchHHHHHhhEEEEecCc
Confidence 345556677789999999999999999999999999998888 443222111 111224688998875
No 192
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.97 E-value=7e-09 Score=97.09 Aligned_cols=183 Identities=14% Similarity=0.139 Sum_probs=103.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCC----cc--c--ccccCCeeEEeeChh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTR----AP--R--AMEKDGVHYHFTERS 188 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr----~~--~--~~~~~g~~y~f~s~~ 188 (346)
+..+.++...+|++++|+|.|||||||++++|.+.++. ..| .+....+ .. + ...-..++++||+.-
T Consensus 20 av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G-~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG-EILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred EEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeee-EEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 44455677889999999999999999999999999873 123 3332221 11 1 112235788999742
Q ss_pred H-H-HHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 189 V-M-EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 189 ~-~-~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
. + +-+....++.|....+...- ..+.+.+.. .+.++... +..-++++...
T Consensus 99 ~sLnPv~~Ig~Qi~E~l~~h~~~~--~~~ea~~~a--------------~~~L~~Vg------------i~~~~~~~~~Y 150 (316)
T COG0444 99 TSLNPVMTIGDQIAEVLRLHGKGL--SKKEAKERA--------------IELLELVG------------IPDPERRLKSY 150 (316)
T ss_pred hhcCChhhHHHHHHHHHHHhhcch--hhHHHHHHH--------------HHHHHHcC------------CCCHHHHHhhC
Confidence 1 1 11111123344333221110 111111110 00011100 11234456666
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC---CHHHHH-HHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND---KLEECY-ENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~---~le~~~-~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
..+.+.+++||+.++-+.... .+.+|+++ .+|.+. .++.+++.++.... +..++++.|+.-.++.+|
T Consensus 151 PhelSGGMrQRV~IAmala~~------P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~-~~aiilITHDl~vva~~a 221 (316)
T COG0444 151 PHELSGGMRQRVMIAMALALN------PKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHDLGVVAEIA 221 (316)
T ss_pred CcccCCcHHHHHHHHHHHhCC------CCEEEeCCCcchhhHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhc
Confidence 667789999999998766443 46788876 555544 47888888887643 444447777766665554
No 193
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.97 E-value=8.9e-11 Score=118.53 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=52.9
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeChhH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~~ 189 (346)
+.|+...+..+.++...+|++++|+||||||||||+++|++..++..| .+....... ......+.+|+|+....
T Consensus 6 ~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 84 (491)
T PRK10982 6 KSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSG-SILFQGKEIDFKSSKEALENGISMVHQELNL 84 (491)
T ss_pred EEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCEECCCCCHHHHHhCCEEEEeccccc
Confidence 344444555566677889999999999999999999999999988888 443222111 11112458899887654
Q ss_pred HH
Q 019061 190 ME 191 (346)
Q Consensus 190 ~~ 191 (346)
+.
T Consensus 85 ~~ 86 (491)
T PRK10982 85 VL 86 (491)
T ss_pred cc
Confidence 43
No 194
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=5.1e-09 Score=97.71 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=47.6
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS 188 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~ 188 (346)
.+..+.++.+.+|++++|+||||||||||+++|++..++..| .+...... .........+|+|+...
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~i~~v~q~~~ 93 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG-EIKIDGITISKENLKEIRKKIGIIFQNPD 93 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEecCcCCHHHHhcceEEEEeCHH
Confidence 345555677789999999999999999999999999988888 44321111 11111245788888753
No 195
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.96 E-value=3.7e-09 Score=95.30 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=59.7
Q ss_pred EeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhh
Q 019061 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (346)
Q Consensus 123 ~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~ 202 (346)
+.+.+++..+|+.++|+|+||||||||++.|.+.++|+.| .+..+.+-...... +.++. +.+ +-.|+
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~v~v~G~v~~li~l-g~Gf~-------pel----TGreN 109 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIEL-GAGFD-------PEL----TGREN 109 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-eEEEcceEehhhhc-ccCCC-------ccc----chHHH
Confidence 3445578889999999999999999999999999999999 55444332222211 12211 112 45667
Q ss_pred hhhhccccCCcHHHHHHHHH
Q 019061 203 ASVHGNLYGTSVEAVEAVAD 222 (346)
Q Consensus 203 ~~~~~~~yg~~~~~i~~~~~ 222 (346)
..+.+.++|.+.+.+++..+
T Consensus 110 i~l~~~~~G~~~~ei~~~~~ 129 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVD 129 (249)
T ss_pred HHHHHHHhCccHHHHHHHHH
Confidence 77777778888777665543
No 196
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=1.4e-10 Score=108.53 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=48.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeec----CCcccccccCCeeEEeeChh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT----TRAPRAMEKDGVHYHFTERS 188 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~t----tr~~~~~~~~g~~y~f~s~~ 188 (346)
+..+.++++.+|++++|+|+||+|||||+++|.+.+++..| .+... +.........+.+|+|+...
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 91 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG-KVKIDGELLTAENVWNLRRKIGMVFQNPD 91 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-EEEECCEECCcCCHHHHhcceEEEEECHH
Confidence 44555677789999999999999999999999999998888 44321 11111112346889998864
No 197
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=1.2e-10 Score=101.32 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=35.9
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+..+.+++..+|++++|+||||+|||||++.|++..++..|
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 55 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG 55 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 44455567789999999999999999999999999988777
No 198
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=5.9e-09 Score=99.94 Aligned_cols=39 Identities=21% Similarity=0.053 Sum_probs=34.2
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.++.+.++++.+|++++|+|+||||||||+++|.+.+++
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~ 59 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY 59 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 455666788889999999999999999999999998863
No 199
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=4.1e-09 Score=99.01 Aligned_cols=66 Identities=11% Similarity=-0.012 Sum_probs=46.4
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCc---cceeeecCCcc----cccccCCeeEEeeChh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF---GFSVSHTTRAP----RAMEKDGVHYHFTERS 188 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~---g~~i~~ttr~~----~~~~~~g~~y~f~s~~ 188 (346)
++.+.++.+.+|++++|+||||||||||+++|++.+++.. | .+....... .......++|+|+...
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G-~i~i~g~~~~~~~~~~~~~~ig~v~q~~~ 94 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS-KITVDGITLTAKTVWDIREKVGIVFQNPD 94 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCc-EEEECCEECCcCCHHHHHhheEEEEECHH
Confidence 4444556778999999999999999999999999988765 5 443222111 1111245789998864
No 200
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.96 E-value=3.7e-09 Score=97.46 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=49.8
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCcc-----c-ccccCCeeE
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP-----R-AMEKDGVHY 182 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~~-----~-~~~~~g~~y 182 (346)
.+.++...+..+.++.+.+|++++|+||||||||||+++|++... +..| .+....... . .....+.+|
T Consensus 13 ~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~ 91 (253)
T PRK14242 13 SFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG-EILLDGENIYDPHVDVVELRRRVGM 91 (253)
T ss_pred EEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCce-EEEECCEEccccccCHHHHhhcEEE
Confidence 344444445555667788999999999999999999999999753 3456 443211111 0 111346888
Q ss_pred EeeChhHH
Q 019061 183 HFTERSVM 190 (346)
Q Consensus 183 ~f~s~~~~ 190 (346)
+++....+
T Consensus 92 v~q~~~~~ 99 (253)
T PRK14242 92 VFQKPNPF 99 (253)
T ss_pred EecCCCCC
Confidence 88876544
No 201
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.96 E-value=4.2e-09 Score=97.01 Aligned_cols=35 Identities=31% Similarity=0.379 Sum_probs=32.1
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+.+.+|++++|+||||||||||+++|++..++..|
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G 54 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG 54 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 45668999999999999999999999999988888
No 202
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.96 E-value=1.6e-10 Score=107.71 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=47.9
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS 188 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~ 188 (346)
.+..+.++...+|++++|+||||||||||+++|++.+++..| .+...... .........+|+|+...
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 97 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG-ELLIDDHPLHFGDYSYRSQRIRMIFQDPS 97 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCchhhHhccEEEEecCch
Confidence 355556677889999999999999999999999999999888 44321111 11111235788888753
No 203
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=1e-08 Score=94.64 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=50.2
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC-----ccceeeecCCc------ccccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRA------PRAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~-----~g~~i~~ttr~------~~~~~~~g~~y~ 183 (346)
+.++...+..+.++.+.+|++++|+||||||||||+++|++.+++. .| .+..-... .......+++|+
T Consensus 15 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v 93 (254)
T PRK14273 15 LFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEG-NVIYEGKNIYSNNFDILELRRKIGMV 93 (254)
T ss_pred EEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCce-EEEECCEecccccccHHHHhhceEEE
Confidence 3344344555566778899999999999999999999999998763 56 33321111 111123468899
Q ss_pred eeChhHH
Q 019061 184 FTERSVM 190 (346)
Q Consensus 184 f~s~~~~ 190 (346)
++....+
T Consensus 94 ~q~~~~~ 100 (254)
T PRK14273 94 FQTPNPF 100 (254)
T ss_pred eeccccc
Confidence 8876554
No 204
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=1.9e-10 Score=106.11 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=50.9
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC-----ccceeeecCCc------ccccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRA------PRAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~-----~g~~i~~ttr~------~~~~~~~g~~y~ 183 (346)
+.++...+..+.++...+|++++|+||||||||||+++|.+.+++. .| .+...... .......+.+|+
T Consensus 12 ~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~~ 90 (253)
T PRK14267 12 VYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG-EVRLFGRNIYSPDVDPIEVRREVGMV 90 (253)
T ss_pred EEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce-EEEECCEEccccccChHHHhhceeEE
Confidence 3344444555666778899999999999999999999999998763 56 44321111 001112457888
Q ss_pred eeChhHHH
Q 019061 184 FTERSVME 191 (346)
Q Consensus 184 f~s~~~~~ 191 (346)
|+....+.
T Consensus 91 ~q~~~~~~ 98 (253)
T PRK14267 91 FQYPNPFP 98 (253)
T ss_pred ecCCccCC
Confidence 88765554
No 205
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=5.7e-09 Score=95.04 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=46.2
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc--cccCCeeEEeeChhHHH
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--MEKDGVHYHFTERSVME 191 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~--~~~~g~~y~f~s~~~~~ 191 (346)
.++.+.+|++++|+||||||||||++.|++..++..| .+......... ....+.+|+|+....+.
T Consensus 18 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 84 (232)
T PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASG-SLTLNGQDHTTTPPSRRPVSMLFQENNLFS 84 (232)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCeecCcCChhhccEEEEeccccccc
Confidence 3456779999999999999999999999999998888 44322111110 11245788888765554
No 206
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=6e-09 Score=95.87 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=51.7
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC-----ccceeeecC-----CcccccccCCeeEE
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTT-----RAPRAMEKDGVHYH 183 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~-----~g~~i~~tt-----r~~~~~~~~g~~y~ 183 (346)
.+.++...+..+.++.+.+|++++|+||||+|||||+++|.+..++. .| .+.... .........+.+|+
T Consensus 10 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~~~~~~~~~~~~~~i~~~ 88 (249)
T PRK14253 10 DLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITG-KLTMDGEDIYGNIDVADLRIKVGMV 88 (249)
T ss_pred EEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCce-EEEECCEEcccccchHHHHhheeEE
Confidence 34455555666667788899999999999999999999999987753 56 332211 10111123457888
Q ss_pred eeChhHHH
Q 019061 184 FTERSVME 191 (346)
Q Consensus 184 f~s~~~~~ 191 (346)
|+....+.
T Consensus 89 ~q~~~~~~ 96 (249)
T PRK14253 89 FQKPNPFP 96 (249)
T ss_pred ecCCCcCc
Confidence 88765543
No 207
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.95 E-value=2.7e-10 Score=105.20 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=49.1
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSV 189 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~ 189 (346)
+.++...+..+.++.+.+|++++|+||||||||||+++|++..++..| .+.... ....+|+|+....
T Consensus 12 ~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~~-------~~~i~~v~q~~~~ 78 (251)
T PRK09544 12 VSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VIKRNG-------KLRIGYVPQKLYL 78 (251)
T ss_pred EEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECC-------ccCEEEecccccc
Confidence 334434455556677889999999999999999999999999988888 443211 1247788876543
No 208
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.95 E-value=4.1e-09 Score=95.96 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=42.2
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHH
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~ 191 (346)
+.+.+|++++|+||||||||||+++|.+..++..| .+........... ...+|+++....+.
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~-~~~~~v~q~~~l~~ 67 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG-GVILEGKQITEPG-PDRMVVFQNYSLLP 67 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCC-hhheEEecCcccCC
Confidence 45668999999999999999999999999988888 4432111111000 01357777655443
No 209
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=1.4e-10 Score=103.51 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=46.8
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC---CCccceeeecCCcc---cccccCCeeEEeeChhHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~---~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~~ 190 (346)
..+..+.++...+|++++|+||||||||||+++|.+.++ +..| .+..-.... ........+|.++....+
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G-~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~ 95 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG-DIHYNGIPYKEFAEKYPGEIIYVSEEDVHF 95 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcce-EEEECCEECccchhhhcceEEEEecccccC
Confidence 345555567788999999999999999999999999988 6677 433211111 011223567777764433
No 210
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.95 E-value=1.8e-10 Score=104.59 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=45.5
Q ss_pred HHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 111 ~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
..+...||.+.+..+.++.+.+|++++|+||||||||||+++|++..++..|
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 77 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG 77 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3455678878788777888889999999999999999999999999988878
No 211
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.94 E-value=2.2e-10 Score=106.36 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=50.1
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCc---cceeeecCCcc---------cccccCCeeEE
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF---GFSVSHTTRAP---------RAMEKDGVHYH 183 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~---g~~i~~ttr~~---------~~~~~~g~~y~ 183 (346)
.++...+..+.++.+.+|++++|+||||||||||+++|++.+++.. | .+..-.... ......+.+|+
T Consensus 13 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~i~~~ 91 (262)
T PRK09984 13 TFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS-HIELLGRTVQREGRLARDIRKSRANTGYI 91 (262)
T ss_pred EeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCce-EEEECCEecccccccchhHHHHHhheEEE
Confidence 3444455566667788999999999999999999999999987643 5 333211110 01112357888
Q ss_pred eeChhHHH
Q 019061 184 FTERSVME 191 (346)
Q Consensus 184 f~s~~~~~ 191 (346)
|+....+.
T Consensus 92 ~q~~~~~~ 99 (262)
T PRK09984 92 FQQFNLVN 99 (262)
T ss_pred cccccccc
Confidence 88765544
No 212
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.94 E-value=8.1e-11 Score=108.96 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=40.2
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
.++...+..+.++...+|++++|+||||||||||+++|++.+++..| .+.
T Consensus 15 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~ 64 (258)
T PRK11701 15 LYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG-EVH 64 (258)
T ss_pred EcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEE
Confidence 33333455556677889999999999999999999999999988888 443
No 213
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.94 E-value=5.7e-09 Score=100.19 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=47.3
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC---ccceeeec----CCcc-c---ccccCCeeEEeeCh
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHT----TRAP-R---AMEKDGVHYHFTER 187 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~---~g~~i~~t----tr~~-~---~~~~~g~~y~f~s~ 187 (346)
..+..+.++.+.+|++++|+|+||||||||+++|++.+++. .| .|..- ++.. . ......++|+||+.
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG-~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG-SATFNGREILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCe-EEEECCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 34556666788899999999999999999999999998874 56 34321 1111 1 11123688999985
No 214
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.94 E-value=1.7e-10 Score=116.86 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=53.9
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeChh
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERS 188 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~~ 188 (346)
.+.++...+..+.++...+|++++|+||||||||||+++|.+..++..| .+...... .......+++|+|+...
T Consensus 11 ~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 89 (501)
T PRK11288 11 GKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAG-SILIDGQEMRFASTTAALAAGVAIIYQELH 89 (501)
T ss_pred EEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCCHHHHHhCCEEEEEechh
Confidence 3445544556666677889999999999999999999999999988888 44322111 11111346889998765
Q ss_pred HHH
Q 019061 189 VME 191 (346)
Q Consensus 189 ~~~ 191 (346)
.+.
T Consensus 90 ~~~ 92 (501)
T PRK11288 90 LVP 92 (501)
T ss_pred ccC
Confidence 544
No 215
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=7.4e-11 Score=109.30 Aligned_cols=50 Identities=20% Similarity=0.166 Sum_probs=42.2
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+.+.+|...++.+.++...+|++++|+||||+|||||+++|.+..++..|
T Consensus 16 ~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G 65 (257)
T PRK14246 16 LYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS 65 (257)
T ss_pred EEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence 34566666667777778889999999999999999999999999888765
No 216
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=8.5e-09 Score=94.16 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=48.6
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVME 191 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~~~ 191 (346)
+..+.++.+.+|++++|+||||+|||||+++|.+.+++..| .+........ .......+|.|+....++
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G-~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~ 84 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSG-KILLNGKDITNLPPEKRDISYVPQNYALFP 84 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEcCcCChhHcCEEEEeecCccCC
Confidence 34445567789999999999999999999999999998888 4432211110 111346788888765553
No 217
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.94 E-value=5.2e-09 Score=106.61 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=103.4
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|+.++++||||||||||++.|.+.+++..| .+.....+.. .......+|++|+..+|. +
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-----~ 410 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG-SIAVNGVPLADADADSWRDQIAWVPQHPFLFA-----G 410 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEehhhCCHHHHHhheEEEcCCCcccC-----c
Confidence 34445567789999999999999999999999999999888 5543222111 112346889888876654 3
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++..+.... .+.+.+.++++.... ...+... .+.++..+..++..-+++.+||
T Consensus 411 ti~~Ni~~~~~~--~~~~~i~~a~~~~~l---------~~~i~~l-------------p~Gldt~v~e~g~~LSgGq~qr 466 (529)
T TIGR02857 411 TIAENIRLARPD--ASDAEIRRALERAGL---------DEFVAAL-------------PQGLDTLIGEGGAGLSGGQAQR 466 (529)
T ss_pred CHHHHHhccCCC--CCHHHHHHHHHHcCc---------HHHHHhC-------------cccccchhccccccCCHHHHHH
Confidence 666776553221 123344443332110 0000000 1245556666777778999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+..+++.+... +.-++|+....-|.+. .+.+.+.+..+. ++.+.+.+.|.++
T Consensus 467 i~laRal~~~~-~ililDE~ts~lD~~~-~~~i~~~l~~~~---~~~t~i~itH~~~ 518 (529)
T TIGR02857 467 LALARAFLRDA-PLLLLDEPTAHLDAET-EALVTEALRALA---QGRTVLLVTHRLA 518 (529)
T ss_pred HHHHHHHhcCC-CEEEEeCcccccCHHH-HHHHHHHHHHhc---CCCEEEEEecCHH
Confidence 99999876642 1111222222224433 234555555442 3455557777554
No 218
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.93 E-value=3.6e-10 Score=102.30 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=49.5
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeec--C--Cccc-----c---cccCCeeEEeeChh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT--T--RAPR-----A---MEKDGVHYHFTERS 188 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~t--t--r~~~-----~---~~~~g~~y~f~s~~ 188 (346)
.+..+.++++.+|++++|+||||+|||||+++|++.+++..| .+... . .... . ....+.+|+|+...
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSG-RILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 455566677889999999999999999999999999988888 44321 1 1110 0 01235788888765
Q ss_pred HHH
Q 019061 189 VME 191 (346)
Q Consensus 189 ~~~ 191 (346)
.+.
T Consensus 101 ~~~ 103 (224)
T TIGR02324 101 VIP 103 (224)
T ss_pred cCC
Confidence 544
No 219
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.93 E-value=1.8e-08 Score=93.38 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=50.3
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCc------ccccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRA------PRAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~------~~~~~~~g~~y~ 183 (346)
+.++...+..+.++++.+|++++|+||||||||||+++|++.++ +..| .+...... .........+|+
T Consensus 21 ~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~ 99 (260)
T PRK10744 21 FYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEG-EILLDGENILTPKQDIALLRAKVGMV 99 (260)
T ss_pred EEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcce-EEEECCEEccccccchHHHhcceEEE
Confidence 34444445555667788999999999999999999999999875 3456 44321111 111113468888
Q ss_pred eeChhHHH
Q 019061 184 FTERSVME 191 (346)
Q Consensus 184 f~s~~~~~ 191 (346)
|+....+.
T Consensus 100 ~q~~~~~~ 107 (260)
T PRK10744 100 FQKPTPFP 107 (260)
T ss_pred ecCCccCc
Confidence 88765443
No 220
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.93 E-value=4.5e-09 Score=106.92 Aligned_cols=48 Identities=23% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc--CCCcc
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFG 162 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~--~~~~g 162 (346)
+.|+...+..+.++...+|++++|+||||||||||+++|++.. ++..|
T Consensus 8 ~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G 57 (520)
T TIGR03269 8 KKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57 (520)
T ss_pred EEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCce
Confidence 3455455666666778899999999999999999999999986 56677
No 221
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.93 E-value=5.5e-09 Score=107.90 Aligned_cols=175 Identities=18% Similarity=0.158 Sum_probs=103.1
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|+.++|+|+||||||||++.|.+.++|..| .+.....+. .....+.++|++|+..+|+.
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~----- 429 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG-EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD----- 429 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc-eEEECCEEhhhCCHHHHHhheEEEccCCccccc-----
Confidence 44455567889999999999999999999999999999888 554322211 11223568899998877654
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHH-HHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS-VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~-l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~ 276 (346)
+..++..+.. ..+.+.+.++++.. ++.. ++.. ++.++..+..++..-+.+.+|
T Consensus 430 Ti~~NI~~~~---~~~d~~i~~a~~~~----------gl~~~i~~l-------------p~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 430 TFLANVTLGR---DISEEQVWQALETV----------QLAELARSL-------------PDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred hHHHHHHhCC---CCCHHHHHHHHHHc----------CcHHHHHhc-------------cccccccccCCCCCCCHHHHH
Confidence 5666666543 12334444443321 1111 1100 122344455566667899999
Q ss_pred HHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccc
Q 019061 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYP 333 (346)
Q Consensus 277 Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~ 333 (346)
|+..+++.+... +.-++|+...+-|.+. .+.+.+.+..+. ++.+.+.+.|.+
T Consensus 484 RialARaLl~~~-~illlDEpts~LD~~t-~~~i~~~l~~~~---~~~tvIivtHr~ 535 (592)
T PRK10790 484 LLALARVLVQTP-QILILDEATANIDSGT-EQAIQQALAAVR---EHTTLVVIAHRL 535 (592)
T ss_pred HHHHHHHHHhCC-CEEEEeCCcccCCHHH-HHHHHHHHHHHh---CCCEEEEEecch
Confidence 999999887642 1112233333334433 345555555543 234444666644
No 222
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.92 E-value=1.6e-08 Score=93.84 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=51.3
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCc------ccccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRA------PRAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~------~~~~~~~g~~y~ 183 (346)
..++...++.+.++.+.+|++++|+|+||+|||||+++|.+.+++ ..| .+..-... .......+.+|+
T Consensus 16 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v 94 (261)
T PRK14263 16 IFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEG-HVHFLGQDVYGKGVDPVVVRRYIGMV 94 (261)
T ss_pred EEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCce-EEEECCEeccccccchHhhhhceEEE
Confidence 345555566666778889999999999999999999999999865 456 33221111 111123457888
Q ss_pred eeChhHH
Q 019061 184 FTERSVM 190 (346)
Q Consensus 184 f~s~~~~ 190 (346)
|+....+
T Consensus 95 ~q~~~~~ 101 (261)
T PRK14263 95 FQQPNPF 101 (261)
T ss_pred ecCCccc
Confidence 8876544
No 223
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=2.6e-10 Score=103.89 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=47.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~ 190 (346)
+..+.++...+|++++|+||||||||||+++|++..++..| .+...... .........+|+|+...++
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG-RILIDGHDVRDYTLASLRRQIGLVSQDVFLF 88 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC-EEEECCEEhhhCCHHHHHhhEEEeCCCCeec
Confidence 34445566779999999999999999999999999988888 44321111 1111124577888775444
No 224
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.92 E-value=3.9e-10 Score=102.25 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=42.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhH
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSV 189 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~ 189 (346)
+.+|++++|+||||||||||+++|.+..++..| .+......... .....+|+|+....
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~-~~~~i~~v~q~~~~ 60 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKG-TVKVAGASPGK-GWRHIGYVPQRHEF 60 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCccchH-hhCcEEEecccccc
Confidence 458999999999999999999999999988888 45433222211 12457888876543
No 225
>PRK02496 adk adenylate kinase; Provisional
Probab=98.92 E-value=8.3e-08 Score=84.17 Aligned_cols=91 Identities=23% Similarity=0.162 Sum_probs=62.6
Q ss_pred CCceEEEecHHHHHHH---H----cCCCCeEEEEEcCCCHHHHHHHHHcCC--CCCHHHHHHHHHHHHHH----HHhccC
Q 019061 224 GKRCILDIDVQGARSV---R----ASPLDAIFIFICPPSMEELEERLRARG--TETEDQILKRLRNAKEE----IKQGKS 290 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l---~----~~~~~~~~ill~~p~~~~l~eRL~~R~--~~~~e~i~~Rl~~~~~~----i~~~~~ 290 (346)
...+++|+.|....+. . .....+..++....+.+.+.+|+..|+ +++++.+++|++.|.+. +++|..
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~ 158 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRD 158 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999987654442 1 122233334444445788999998875 45788999999999873 445554
Q ss_pred CCCceEEEcCCCHHHHHHHHHHHH
Q 019061 291 SGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 291 ~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
.+.+..|.++.+++++++++...+
T Consensus 159 ~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 159 RQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHh
Confidence 456778888889999999887655
No 226
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.92 E-value=3.1e-10 Score=104.60 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=50.0
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCc------ccccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRA------PRAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~------~~~~~~~g~~y~ 183 (346)
..++...+..+.++.+.+|++++|+|+||||||||++.|++..+ +..| .+...... .......+.+|+
T Consensus 12 ~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G-~v~i~g~~~~~~~~~~~~~~~~i~~~ 90 (251)
T PRK14251 12 LSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITG-EIKFEGQNIYGSKMDLVELRKEVGMV 90 (251)
T ss_pred EEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcce-EEEECCEEcccccchHHHhhccEEEE
Confidence 44554445555667788999999999999999999999999875 2456 44321111 111123457888
Q ss_pred eeChhHH
Q 019061 184 FTERSVM 190 (346)
Q Consensus 184 f~s~~~~ 190 (346)
++....+
T Consensus 91 ~q~~~~~ 97 (251)
T PRK14251 91 FQQPTPF 97 (251)
T ss_pred ecCCccC
Confidence 8876544
No 227
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.92 E-value=1.4e-08 Score=94.02 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=50.6
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc------cccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~g~~y~ 183 (346)
+.++...++.+.++.+.+|++++|+||||||||||+++|.+..++ ..| .|..-.... ......+.+|+
T Consensus 12 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G-~I~~~g~~~~~~~~~~~~~~~~i~~~ 90 (258)
T PRK14241 12 IYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG-EVLLDGEDLYGPGVDPVAVRRTIGMV 90 (258)
T ss_pred EEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcce-EEEECCEeccccccChHHHhcceEEE
Confidence 444444555566677889999999999999999999999998863 466 443211110 11123457888
Q ss_pred eeChhHHH
Q 019061 184 FTERSVME 191 (346)
Q Consensus 184 f~s~~~~~ 191 (346)
|+....+.
T Consensus 91 ~q~~~~~~ 98 (258)
T PRK14241 91 FQRPNPFP 98 (258)
T ss_pred ccccccCC
Confidence 88765543
No 228
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.92 E-value=4.8e-09 Score=95.13 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=48.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC---CCccceeeecCCcc-cccccCCeeEEeeChhHHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRAP-RAMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~---~~~g~~i~~ttr~~-~~~~~~g~~y~f~s~~~~~~ 192 (346)
+..+.++.+.+|++++|+||||||||||+++|.+.++ +..| .+....... ......+.+|+|+....+..
T Consensus 22 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G-~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG-QILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCce-EEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 4444556778999999999999999999999999988 7777 333211111 11123467888887655543
No 229
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.92 E-value=2.9e-10 Score=105.17 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=49.5
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChh
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS 188 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~ 188 (346)
.++...+..+.++...+|++++|+||||+|||||++.|++.+++..| .+...... .........+|+++...
T Consensus 10 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (256)
T TIGR03873 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG-TVDLAGVDLHGLSRRARARRVALVEQDSD 85 (256)
T ss_pred EECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCEEcccCCHHHHhhheEEecccCc
Confidence 34444555666677889999999999999999999999999988888 44321111 11111234678877653
No 230
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.91 E-value=2.9e-10 Score=99.83 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=35.9
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+..+.++...+|++++|+||||+|||||+++|.+.+++..|
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASG 55 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 44445567789999999999999999999999999998888
No 231
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=9.5e-09 Score=96.80 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=46.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc---------ccccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA---------PRAMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~---------~~~~~~~g~~y~f~s~ 187 (346)
+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+...... ........++|+++..
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~ 99 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG-QTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFP 99 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEccccccccccHHHHhccEEEEEeCc
Confidence 44555667789999999999999999999999999988888 44321111 0111124578888875
No 232
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.91 E-value=1e-08 Score=105.82 Aligned_cols=176 Identities=19% Similarity=0.227 Sum_probs=101.8
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|+.++|+|+||||||||++.|.+.++|..| .+.....+.. ......++|++|+..+|..
T Consensus 350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~----- 423 (588)
T PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG-RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR----- 423 (588)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEEhhhCCHHHHHhheEEEecCcccccc-----
Confidence 44555567789999999999999999999999999999888 5543222111 1123458899998876643
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHH-HHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS-VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~-l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~ 276 (346)
++.++..+... ..+.+.+..+++.. +... +... ...++..+..++...+.+.+|
T Consensus 424 Ti~~Ni~~~~~--~~~d~~i~~al~~~----------~l~~~i~~l-------------p~gldt~i~~~g~~LSgGq~Q 478 (588)
T PRK13657 424 SIEDNIRVGRP--DATDEEMRAAAERA----------QAHDFIERK-------------PDGYDTVVGERGRQLSGGERQ 478 (588)
T ss_pred cHHHHHhcCCC--CCCHHHHHHHHHHh----------CHHHHHHhC-------------cccccchhcCCCCCCCHHHHH
Confidence 56666655321 12233344333220 1111 1100 123444555566667889999
Q ss_pred HHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccc
Q 019061 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYP 333 (346)
Q Consensus 277 Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~ 333 (346)
|+..+++.+... +.-++|+...+-|.+. .+.+.+.+..+. +..+++.+.|.+
T Consensus 479 RialARall~~~-~iliLDEpts~LD~~t-~~~i~~~l~~~~---~~~tvIiitHr~ 530 (588)
T PRK13657 479 RLAIARALLKDP-PILILDEATSALDVET-EAKVKAALDELM---KGRTTFIIAHRL 530 (588)
T ss_pred HHHHHHHHhcCC-CEEEEeCCccCCCHHH-HHHHHHHHHHHh---cCCEEEEEEecH
Confidence 999999776642 1122333334445433 344555555442 244554666644
No 233
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.91 E-value=3.2e-09 Score=120.83 Aligned_cols=95 Identities=16% Similarity=0.061 Sum_probs=63.3
Q ss_pred HHcCC--eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhH
Q 019061 115 KVVGA--EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 115 ~~~g~--~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~ 189 (346)
+.|+. ..+..+.++.+.+|++++|+|||||||||++++|.+..++..| .+....... .......++|.++...+
T Consensus 1945 K~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG-~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L 2023 (2272)
T TIGR01257 1945 KVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG-DATVAGKSILTNISDVHQNMGYCPQFDAI 2023 (2272)
T ss_pred EEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCEECcchHHHHhhhEEEEeccccC
Confidence 44543 3455556677889999999999999999999999999999888 443211111 11122458899887666
Q ss_pred HHHHHhccchhhhhhhhccccCCcH
Q 019061 190 MEKAIKDGKFLEFASVHGNLYGTSV 214 (346)
Q Consensus 190 ~~~~~~~~~~~e~~~~~~~~yg~~~ 214 (346)
++.+ +..|+..+....++.+.
T Consensus 2024 ~~~L----Tv~E~L~l~a~l~g~~~ 2044 (2272)
T TIGR01257 2024 DDLL----TGREHLYLYARLRGVPA 2044 (2272)
T ss_pred CCCC----CHHHHHHHHHHhcCCCH
Confidence 5544 56666655555555543
No 234
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.90 E-value=5.4e-09 Score=107.67 Aligned_cols=178 Identities=15% Similarity=0.089 Sum_probs=100.8
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|+.++|+|+||+|||||++.|++.++|..| .+.....+. .....+..+|++|+..+|..
T Consensus 358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~----- 431 (582)
T PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG-EILLDGHDLRDYTLASLRNQVALVSQNVHLFND----- 431 (582)
T ss_pred cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCc-eEEECCEEhhhcCHHHHHhhceEEccCceeecc-----
Confidence 44445567789999999999999999999999999999888 554322221 11223557899888766643
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHH-HHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS-VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~-l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~ 276 (346)
+..++..+...- ..+.+.+.++++.. ++.. +... .+.++.++..++..-+++.+|
T Consensus 432 Ti~~Ni~~~~~~-~~~~~~i~~al~~~----------~l~~~i~~l-------------p~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 432 TIANNIAYARTE-QYSREQIEEAARMA----------YAMDFINKM-------------DNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred hHHHHHhcCCCC-CCCHHHHHHHHHHh----------CcHHHHHhc-------------ccccCceeCCCCCcCCHHHHH
Confidence 566666543110 12234444433321 0000 0000 122344455566667899999
Q ss_pred HHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 277 Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
|+..+++.+...+ .-++|+-...-|.+.. ..+.+.+..+ ..+++.+.+.|.++
T Consensus 488 Ri~LARall~~~~-ililDEptsaLD~~t~-~~i~~~l~~~---~~~~tvI~VtHr~~ 540 (582)
T PRK11176 488 RIAIARALLRDSP-ILILDEATSALDTESE-RAIQAALDEL---QKNRTSLVIAHRLS 540 (582)
T ss_pred HHHHHHHHHhCCC-EEEEECccccCCHHHH-HHHHHHHHHH---hCCCEEEEEecchH
Confidence 9999998876521 1112222223344332 3444555444 23445546666443
No 235
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=7.2e-09 Score=99.09 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=37.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
+..+.++.+.+|++++|+|+||||||||+++|++.+++..| .|.
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G-~I~ 84 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG-TIQ 84 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEE
Confidence 44555667789999999999999999999999999999888 443
No 236
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=9.8e-09 Score=96.05 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=47.7
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----c--ccccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----R--AMEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~--~~~~~g~~y~f~s~ 187 (346)
.+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+....... . ......++|+|++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 87 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG-EVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEECccccchHHHHHhheEEEeeCh
Confidence 345556677889999999999999999999999999988888 443221111 0 11234588998885
No 237
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.90 E-value=4.2e-09 Score=89.86 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=42.8
Q ss_pred HHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 111 ~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+++....+...++.+.++...+|+.++++||||||||||+++++.+.++..|
T Consensus 7 kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G 58 (223)
T COG4619 7 KQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSG 58 (223)
T ss_pred HHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCc
Confidence 3344444556666767777889999999999999999999999999999888
No 238
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=9.5e-09 Score=94.67 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=50.8
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC-----ccceeeecCCc------ccccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRA------PRAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~-----~g~~i~~ttr~------~~~~~~~g~~y~ 183 (346)
+.++...+..+.++.+.+|++++|+||||+|||||+++|.+.+++. .| .+...... .......+.+|+
T Consensus 12 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~ 90 (252)
T PRK14272 12 IYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG-RILLDGQDIYGPRVDPVAMRRRVGMV 90 (252)
T ss_pred EEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCce-eEEECCEEcccCccCHHHhhceeEEE
Confidence 3444445566666778899999999999999999999999998653 46 33321111 011123457888
Q ss_pred eeChhHHH
Q 019061 184 FTERSVME 191 (346)
Q Consensus 184 f~s~~~~~ 191 (346)
|+....+.
T Consensus 91 ~q~~~~~~ 98 (252)
T PRK14272 91 FQKPNPFP 98 (252)
T ss_pred eccCccCc
Confidence 88765544
No 239
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.90 E-value=6.7e-09 Score=106.93 Aligned_cols=176 Identities=15% Similarity=0.138 Sum_probs=102.9
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|++++|+||||||||||++.|++.+++..| .+.....+. ........+|++|...+|..
T Consensus 355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~----- 428 (574)
T PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG-EILLNGQPIADYSEAALRQAISVVSQRVHLFSA----- 428 (574)
T ss_pred ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEhhhCCHHHHHhheeEEcccchhhcc-----
Confidence 44555667789999999999999999999999999999888 454322211 11223457899888766643
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~ 276 (346)
+..++..+... ..+.+.+.++++. +..-.++. ++.++..+..++...+.+.+|
T Consensus 429 ti~~Ni~~~~~--~~~~~~i~~al~~~~l~~~i~~------------------------p~GldT~vge~g~~LSgGqrq 482 (574)
T PRK11160 429 TLRDNLLLAAP--NASDEALIEVLQQVGLEKLLED------------------------DKGLNAWLGEGGRQLSGGEQR 482 (574)
T ss_pred cHHHHhhcCCC--ccCHHHHHHHHHHcCCHHHHcC------------------------ccccCchhcCCCCCCCHHHHH
Confidence 55666554321 1233344443332 11101011 134555666677777899999
Q ss_pred HHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 277 Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
|+..+++.+...+ .-++|+....-|.+. .+.+.+.+.++. ++++.+.+.|.++
T Consensus 483 RialARall~~~~-ililDE~ts~lD~~t-~~~i~~~l~~~~---~~~tviiitHr~~ 535 (574)
T PRK11160 483 RLGIARALLHDAP-LLLLDEPTEGLDAET-ERQILELLAEHA---QNKTVLMITHRLT 535 (574)
T ss_pred HHHHHHHHhcCCC-EEEEeCCcccCCHHH-HHHHHHHHHHHc---CCCEEEEEecChh
Confidence 9999998876521 111222222224433 345556665553 3445546666543
No 240
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.89 E-value=2.5e-08 Score=91.83 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=48.1
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc------cccccCCeeEEee
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFT 185 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~g~~y~f~ 185 (346)
++...+..+.++++.+|++++|+||||||||||+++|.+..++ ..| .+..-.... ........+|+|+
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14240 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEG-EVLLDGQDIYKSDIDVNQLRKRVGMVFQ 91 (250)
T ss_pred ECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEccccccchHHHhccEEEEec
Confidence 3333455556677889999999999999999999999997642 356 433211111 1111245788888
Q ss_pred ChhHHH
Q 019061 186 ERSVME 191 (346)
Q Consensus 186 s~~~~~ 191 (346)
....+.
T Consensus 92 ~~~~~~ 97 (250)
T PRK14240 92 QPNPFP 97 (250)
T ss_pred CCccCc
Confidence 765443
No 241
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.89 E-value=2.4e-08 Score=93.00 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=51.4
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc------cccccCCeeE
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHY 182 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~g~~y 182 (346)
.+.++...++.+.++.+.+|++++|+||||||||||+++|.+..++ ..| .+..-.... ........+|
T Consensus 26 ~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~I~~~g~~i~~~~~~~~~~~~~i~~ 104 (267)
T PRK14235 26 SVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTG-KITLDGEDIYDPRLDVVELRARVGM 104 (267)
T ss_pred EEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCce-EEEECCEECcccccchHHHhhceEE
Confidence 3455555566666677889999999999999999999999998864 566 443211111 0111245788
Q ss_pred EeeChhHH
Q 019061 183 HFTERSVM 190 (346)
Q Consensus 183 ~f~s~~~~ 190 (346)
+|+....+
T Consensus 105 v~q~~~~~ 112 (267)
T PRK14235 105 VFQKPNPF 112 (267)
T ss_pred EecCCCCC
Confidence 88876544
No 242
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1e-08 Score=94.21 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=51.4
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC---CCccceeeec----CCcccccccCCeeEEeeC
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHT----TRAPRAMEKDGVHYHFTE 186 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~---~~~g~~i~~t----tr~~~~~~~~g~~y~f~s 186 (346)
.+.|+...+..+.++...+|++++|+||||+|||||+++|++..+ +..| .+..- +...........+|+|+.
T Consensus 9 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~~~q~ 87 (246)
T PRK14269 9 NLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDG-LVEIEGKDVKNQDVVALRKNVGMVFQQ 87 (246)
T ss_pred EEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCce-EEEECCEecccCCHHHHhhhEEEEecC
Confidence 344554455555667788999999999999999999999999864 4566 44321 111111123457899888
Q ss_pred hhHHH
Q 019061 187 RSVME 191 (346)
Q Consensus 187 ~~~~~ 191 (346)
..+|.
T Consensus 88 ~~l~~ 92 (246)
T PRK14269 88 PNVFV 92 (246)
T ss_pred Ccccc
Confidence 66553
No 243
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=2.2e-08 Score=92.33 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=49.8
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc-----c-ccccCCeeEEe
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP-----R-AMEKDGVHYHF 184 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~-----~-~~~~~g~~y~f 184 (346)
.++...+..+.++.+.+|++++|+|+||+|||||+++|.+..++ ..| .+....... . .......+|+|
T Consensus 13 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~~~ 91 (251)
T PRK14270 13 WYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEG-EVLLDGKNIYDKDVDVVELRKRVGMVF 91 (251)
T ss_pred EECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCcc-EEEECCEecccccccHHHHHhheEEEe
Confidence 34444455556677789999999999999999999999998764 456 333211111 1 11134578998
Q ss_pred eChhHHH
Q 019061 185 TERSVME 191 (346)
Q Consensus 185 ~s~~~~~ 191 (346)
+....+.
T Consensus 92 q~~~~~~ 98 (251)
T PRK14270 92 QKPNPFP 98 (251)
T ss_pred cCCCcCC
Confidence 8865543
No 244
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.89 E-value=2e-10 Score=117.71 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=52.0
Q ss_pred HHHHcC-CeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHH
Q 019061 113 QKKVVG-AEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 113 ~~~~~g-~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~ 190 (346)
+.+.|+ ...++.+.++.+.+|++++|+||||||||||+++|++..++..| .+..... ..++|+++....+
T Consensus 12 l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G-~i~~~~~-------~~i~~v~Q~~~~~ 82 (556)
T PRK11819 12 VSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEG-EARPAPG-------IKVGYLPQEPQLD 82 (556)
T ss_pred EEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCC-------CEEEEEecCCCCC
Confidence 345565 45666677788889999999999999999999999999988888 4432111 2367887765443
No 245
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.89 E-value=3.1e-10 Score=103.65 Aligned_cols=68 Identities=21% Similarity=0.164 Sum_probs=48.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~ 190 (346)
+..+.++...+|++++|+||||||||||+++|++.+++..| .+....... ........+|+|+...++
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG-RVLVDGHDLALADPAWLRRQVGVVLQENVLF 88 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCeehHhcCHHHHhhcEEEEcCCchhc
Confidence 44455567789999999999999999999999999988888 443222111 111124578888876544
No 246
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.89 E-value=9.3e-09 Score=106.82 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=37.0
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
.+..+.++...+|++++|+||||||||||+++|++.+++..|
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G 71 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG 71 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCe
Confidence 455666777889999999999999999999999999988777
No 247
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=2.4e-08 Score=92.08 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=50.6
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC--C---CccceeeecCCcc-----cc-cccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP-----RA-MEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~--~---~~g~~i~~ttr~~-----~~-~~~~g~~y~ 183 (346)
+.++...+..+.++.+.+|++++|+||||||||||+++|++.++ + ..| .+..-.... .. ......+|+
T Consensus 12 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~i~~~~~~~~~~~~~i~~~ 90 (252)
T PRK14256 12 VHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG-KILLDDTDIYDRGVDPVSIRRRVGMV 90 (252)
T ss_pred EEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCce-EEEECCEEcccccCChHHhhccEEEE
Confidence 33444455666667788999999999999999999999999875 3 356 443211111 11 123457888
Q ss_pred eeChhHHH
Q 019061 184 FTERSVME 191 (346)
Q Consensus 184 f~s~~~~~ 191 (346)
|+....+.
T Consensus 91 ~q~~~~~~ 98 (252)
T PRK14256 91 FQKPNPFP 98 (252)
T ss_pred ecCCCCCC
Confidence 88765554
No 248
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.89 E-value=8.6e-09 Score=108.42 Aligned_cols=178 Identities=14% Similarity=0.106 Sum_probs=103.8
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|+.++++|+||||||||++.|.+.+++..| .+.....+.. ...+..++|++|+..+|..
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~----- 553 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG-SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG----- 553 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEhhhCCHHHHHhccEEECCChhhhhh-----
Confidence 44455667889999999999999999999999999999888 5543222111 1123568899998877653
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..|+..+...- .+.+.+.++++... +...-... ++.++..+..+|..-+.+.+||
T Consensus 554 TI~eNi~~~~~~--~~~~~i~~a~~~~~----------l~~~i~~l------------p~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 554 TLRDNIALGAPY--ADDEEILRAAELAG----------VTEFVRRH------------PDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hHHHHHhCCCCC--CCHHHHHHHHHHcC----------hHHHHHhC------------cccccceecCCCCCCCHHHHHH
Confidence 667776554221 23344444433211 11100000 1234445566676778999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+..+++.+... +.-++|+...+-|.+. .+.+.+.+.++. ++++.+.+.|.++
T Consensus 610 lalARall~~p-~iliLDE~Ts~LD~~t-e~~i~~~l~~~~---~~~T~iiItHrl~ 661 (694)
T TIGR03375 610 VALARALLRDP-PILLLDEPTSAMDNRS-EERFKDRLKRWL---AGKTLVLVTHRTS 661 (694)
T ss_pred HHHHHHHhcCC-CEEEEeCCCCCCCHHH-HHHHHHHHHHHh---CCCEEEEEecCHH
Confidence 99999877542 1112233223334432 345556665553 2344446666443
No 249
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.1e-08 Score=106.41 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=47.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----c--ccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----R--AMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~--~~~~~g~~y~f~s~ 187 (346)
++.+.++.+.+|++++|+|+||||||||+++|++..++..| .|....... . ......++|+||..
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 410 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGG-EIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCc-EEEECCEECCcCCHHHHHHhcCCeEEEecCc
Confidence 45556677889999999999999999999999999988888 443211110 0 01124688999875
No 250
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.89 E-value=8e-09 Score=108.51 Aligned_cols=174 Identities=15% Similarity=0.088 Sum_probs=101.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|+.++++|+||||||||++.|++.++|..| .|.....+.+ ...+...+|++|+..+|..
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g----- 541 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG-SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG----- 541 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEcCcCCHHHHHhccEEEccCCccCcc-----
Confidence 45556677889999999999999999999999999999888 5543222211 1223568899998776643
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..|+..+... .+.+.+.++++.... + ..+... .+.++..+..+|..-+.+.+||
T Consensus 542 TI~eNi~~~~~---~~~e~i~~al~~a~l---~------~~i~~l-------------p~G~dt~ige~G~~LSGGQrQR 596 (686)
T TIGR03797 542 SIFENIAGGAP---LTLDEAWEAARMAGL---A------EDIRAM-------------PMGMHTVISEGGGTLSGGQRQR 596 (686)
T ss_pred cHHHHHhcCCC---CCHHHHHHHHHHcCc---H------HHHHhc-------------cccccccccCCCCCCCHHHHHH
Confidence 56676655332 233444444332110 0 000000 1234445556666678999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYP 333 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~ 333 (346)
+..+++.+... +.-++|+...+-|.+. .+.+.+.+..+ + .+.+.+.|.+
T Consensus 597 ialARAll~~p-~iLiLDEpTS~LD~~t-e~~i~~~L~~~----~-~T~IiItHr~ 645 (686)
T TIGR03797 597 LLIARALVRKP-RILLFDEATSALDNRT-QAIVSESLERL----K-VTRIVIAHRL 645 (686)
T ss_pred HHHHHHHhcCC-CEEEEeCCccCCCHHH-HHHHHHHHHHh----C-CeEEEEecCh
Confidence 99999877542 1112233333334433 23444555443 2 3444556543
No 251
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.88 E-value=4.5e-10 Score=103.78 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=46.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC----CccceeeecCCcc--cccccCCeeEEeeChh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS----MFGFSVSHTTRAP--RAMEKDGVHYHFTERS 188 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~----~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~ 188 (346)
+..+.++...+|++++|+||||||||||++.|.+..++ ..| .+....... .......++|+|+...
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G-~i~~~g~~i~~~~~~~~~i~~v~q~~~ 89 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAG-RVLLDGKPVAPCALRGRKIATIMQNPR 89 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCC-EEEECCeeccccccccceEEEEecCCc
Confidence 44445567789999999999999999999999999887 677 443211111 1111245788888753
No 252
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.88 E-value=5.7e-10 Score=102.92 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=40.5
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
.++...+..+.++.+.+|++++|+||||||||||+++|++..++..| .+.
T Consensus 12 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~ 61 (253)
T TIGR02323 12 SYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG-TAT 61 (253)
T ss_pred EeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEE
Confidence 34433455556677889999999999999999999999999998888 443
No 253
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.88 E-value=1.2e-08 Score=101.50 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=70.3
Q ss_pred HHHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecC-----CcccccccCCeeEEe
Q 019061 110 VREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT-----RAPRAMEKDGVHYHF 184 (346)
Q Consensus 110 ~~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~tt-----r~~~~~~~~g~~y~f 184 (346)
++++.|+||....+.+.++...+|++.+|+|.||+|||||++.|.+.+++..| .|..-. ..+......|+..++
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G-~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG-EILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc-eEEECCEEccCCCHHHHHhCCcEEEe
Confidence 35677889887777778888899999999999999999999999999999988 554222 233344456888899
Q ss_pred eChhHHHHHHhccchhhhh
Q 019061 185 TERSVMEKAIKDGKFLEFA 203 (346)
Q Consensus 185 ~s~~~~~~~~~~~~~~e~~ 203 (346)
|...+++.+ ++.|+.
T Consensus 90 QEl~L~p~L----sVaeNi 104 (500)
T COG1129 90 QELSLVPNL----SVAENI 104 (500)
T ss_pred echhccCCc----cHHHHh
Confidence 998888776 666664
No 254
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.88 E-value=3.5e-08 Score=87.99 Aligned_cols=60 Identities=28% Similarity=0.342 Sum_probs=47.6
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~ 190 (346)
.+..+.++.+.+|++++|+||||+|||||+++|++..++..| .+.... .++|+++....+
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G-~i~~~g---------~i~~~~q~~~l~ 78 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG-SVSVPG---------SIAYVSQEPWIQ 78 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC-eEEEcC---------EEEEEecCchhc
Confidence 455566677889999999999999999999999999988888 443321 377888876554
No 255
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.88 E-value=1.8e-10 Score=110.32 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=74.0
Q ss_pred EEcCCCCChHHHHHhhccccCCCccceeeecCCccc--ccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCCcHH
Q 019061 138 ITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVE 215 (346)
Q Consensus 138 l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~~~~ 215 (346)
|+||||||||||+++|++..++..| .+....+... .......+|+|+...+|+.+ ++.++..+....++....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G-~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~----tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSG-SIMLDGEDVTNVPPHLRHINMVFQSYALFPHM----TVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEecCccccCCC----cHHHHHHHHHhhcCCCHH
Confidence 5899999999999999999998888 4433221110 11234688999987666543 455555443222232222
Q ss_pred ----HHHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 019061 216 ----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (346)
Q Consensus 216 ----~i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~ 281 (346)
.+.+.++. +..-.++-.+..+..-++++......++..|+...+||++.+.|..+...+.+.+..+
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 12222222 1111222222222222333333344455555566666777777655555555555443
No 256
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.87 E-value=5.3e-10 Score=113.70 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=46.3
Q ss_pred eccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeee--cC------Ccc---cccccCCeeEEeeChhHHH
Q 019061 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH--TT------RAP---RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 124 ~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~--tt------r~~---~~~~~~g~~y~f~s~~~~~ 191 (346)
.+.++.+.+|++++|+||||||||||+++|++..++..| .+.. .. ... ........+|+|+...++.
T Consensus 301 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 378 (520)
T TIGR03269 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG-EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP 378 (520)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEEecCCccccccccchhhHHHHhhhEEEEccCcccCC
Confidence 334456779999999999999999999999999988888 4433 11 100 0011235789888765444
No 257
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=3.3e-08 Score=93.04 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCc------ccccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRA------PRAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~------~~~~~~~g~~y~ 183 (346)
+.++...++.+.++.+.+|++++|+||||||||||+++|.+.++ +..| .+..-... .........+|+
T Consensus 47 ~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G-~I~i~G~~i~~~~~~~~~~~~~i~~v 125 (285)
T PRK14254 47 VFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEG-ELTFRGKNVYDADVDPVALRRRIGMV 125 (285)
T ss_pred EEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce-EEEECCEEccccccchHhhhccEEEE
Confidence 34444455666667788999999999999999999999999976 3566 34321111 011123457888
Q ss_pred eeChhHH
Q 019061 184 FTERSVM 190 (346)
Q Consensus 184 f~s~~~~ 190 (346)
|+...++
T Consensus 126 ~q~~~l~ 132 (285)
T PRK14254 126 FQKPNPF 132 (285)
T ss_pred ecCCccC
Confidence 8876544
No 258
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.87 E-value=7.9e-10 Score=111.91 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=51.5
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC--CccceeeecCCcc-----cccccCCeeEEeeCh
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAP-----RAMEKDGVHYHFTER 187 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~--~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~ 187 (346)
+.|+...+..+.++...+|++++|+||||||||||+++|++..++ ..| .+....... ......+.+|+|+..
T Consensus 9 ~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 87 (500)
T TIGR02633 9 KTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDG-EIYWSGSPLKASNIRDTERAGIVIIHQEL 87 (500)
T ss_pred EEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCCCCHHHHHhCCEEEEeecc
Confidence 344444555556677889999999999999999999999999875 567 443211111 111124688999876
Q ss_pred hHHH
Q 019061 188 SVME 191 (346)
Q Consensus 188 ~~~~ 191 (346)
..+.
T Consensus 88 ~~~~ 91 (500)
T TIGR02633 88 TLVP 91 (500)
T ss_pred ccCC
Confidence 5444
No 259
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.87 E-value=5.5e-09 Score=118.95 Aligned_cols=184 Identities=13% Similarity=0.107 Sum_probs=105.4
Q ss_pred HHHHcC--CeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc---ccccccCCeeEEeeCh
Q 019061 113 QKKVVG--AEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA---PRAMEKDGVHYHFTER 187 (346)
Q Consensus 113 ~~~~~g--~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~---~~~~~~~g~~y~f~s~ 187 (346)
+.+.++ ...+..+.++...+|++++|+||||||||||+++|.|..+|..| .+...... .........+|.++..
T Consensus 934 LsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG-~I~i~G~dI~~~~~~~r~~IG~~pQ~~ 1012 (2272)
T TIGR01257 934 LVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSG-TVLVGGKDIETNLDAVRQSLGMCPQHN 1012 (2272)
T ss_pred EEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCce-EEEECCEECcchHHHHhhcEEEEecCC
Confidence 344452 34556666677889999999999999999999999999999888 44321111 1111234578998887
Q ss_pred hHHHHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 188 SVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
.+++.+ ++.|+..+....++...+..++.... .+... .+.+....+.
T Consensus 1013 ~L~~~L----TV~E~L~f~~~lkg~~~~~~~~~v~~--------------lL~~v---------------gL~~~~~~~~ 1059 (2272)
T TIGR01257 1013 ILFHHL----TVAEHILFYAQLKGRSWEEAQLEMEA--------------MLEDT---------------GLHHKRNEEA 1059 (2272)
T ss_pred cCCCCC----CHHHHHHHHHHhcCCCHHHHHHHHHH--------------HHHHc---------------CCchhhcCCh
Confidence 665544 66666665544455433222111110 00000 0111122222
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 268 ~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
...+.+.++|+..+++.+.. ...++.++ |+.. .+.+.+++.++. .++.++.+.|+++.+..+|
T Consensus 1060 ~~LSGGqKQRLsLArALi~~------PkVLLLDEPTSGLDp~s-r~~l~~lL~~l~---~g~TIIltTHdmdea~~la 1127 (2272)
T TIGR01257 1060 QDLSGGMQRKLSVAIAFVGD------AKVVVLDEPTSGVDPYS-RRSIWDLLLKYR---SGRTIIMSTHHMDEADLLG 1127 (2272)
T ss_pred hhCCHHHHHHHHHHHHHHcC------CCEEEEECCCcCCCHHH-HHHHHHHHHHHh---CCCEEEEEECCHHHHHHhC
Confidence 34468888998888877654 23333332 4432 345666666662 2455557778777665544
No 260
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.87 E-value=4.3e-08 Score=89.26 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=37.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHH----HHhccCCCC-ceEE---EcCCCHHHHHHHHHH
Q 019061 262 RLRARGTETEDQILKRLRNAKEE----IKQGKSSGI-FDHI---LYNDKLEECYENLKV 312 (346)
Q Consensus 262 RL~~R~~~~~e~i~~Rl~~~~~~----i~~~~~~~~-~~~V---i~n~~le~~~~~l~~ 312 (346)
++..|.+++++.+++|++.|.++ +.+|...++ +..+ .++.+++++++.+.+
T Consensus 169 ~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 227 (229)
T PTZ00088 169 KLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQ 227 (229)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHh
Confidence 45567788899999999999876 667766666 5444 467789888876654
No 261
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.86 E-value=1.8e-08 Score=94.17 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=37.5
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~ 160 (346)
.++...++.+.++.+.+|++++|+||||||||||+++|++.+++.
T Consensus 10 ~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred EECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 344445566666778899999999999999999999999998876
No 262
>KOG0708 consensus Membrane-associated guanylate kinase MAGUK (contains PDZ, SH3, HOOK and GUK domains) [Nucleotide transport and metabolism]
Probab=98.86 E-value=2.9e-08 Score=94.03 Aligned_cols=168 Identities=30% Similarity=0.446 Sum_probs=136.4
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
....+++.|+||- |.-+...|+...+..|+.+++||+++. .+.+......+.|++..++.+++
T Consensus 184 ~~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~~q~~~~~ 246 (359)
T KOG0708|consen 184 SNYLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFIDAGQRSNGL 246 (359)
T ss_pred ccccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhhcccCceeeecccCCCc
Confidence 3467899999998 777999999998889998999998865 23455567778999999999999
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~ 289 (346)
|+++...+.+..+.++.|+||+...+.+.++.....+++||+.+.+...+.++-..+ +.+..++.++++...-+.
T Consensus 247 ~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~~~~---t~~~ake~~e~a~klEqe-- 321 (359)
T KOG0708|consen 247 YGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERNLKI---TGEQAKELLERARKLEQE-- 321 (359)
T ss_pred ceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHhccc---chHHHHHHHHHHHHhHhh--
Confidence 999999999999999999999999999999998889999999998887776654333 456666666666533222
Q ss_pred CCCCceEEEcCCCHHHHHHHHHHHHHHhhc
Q 019061 290 SSGIFDHILYNDKLEECYENLKVICYCLMQ 319 (346)
Q Consensus 290 ~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~ 319 (346)
...+|..++.-+++++.+.+++.+|...++
T Consensus 322 ~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~ 351 (359)
T KOG0708|consen 322 LDRYFTLVVQGGSLEELLSQVKDIIEDEQK 351 (359)
T ss_pred hhhceEEEEecccHHHHHHHHHHHHHHhhC
Confidence 245578888888999999999999987754
No 263
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.86 E-value=2.2e-08 Score=87.63 Aligned_cols=160 Identities=24% Similarity=0.267 Sum_probs=87.6
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc--ccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCC
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA--PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~--~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~ 212 (346)
.++|+|||||||||+++.|+..++ +.|..+. -+.....+.. -.......+..+.+....-+. +.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~------i~hlstgd~~r~~~~~~t~----lg~~~k~~i~~g~lv~d~i~~----~~ 67 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG------LPHLDTGDILRAAIAERTE----LGEEIKKYIDKGELVPDEIVN----GL 67 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC------CcEEcHhHHhHhhhccCCh----HHHHHHHHHHcCCccchHHHH----HH
Confidence 578999999999999999998743 3333211 1111111100 001111223333322211111 11
Q ss_pred cHHHHHHHHHhCCceEEEecHHHHHHHH-------cCCCCeEEEEEcCCCHHHHHHHHHcCC---CCCHHHHHHHHHHHH
Q 019061 213 SVEAVEAVADAGKRCILDIDVQGARSVR-------ASPLDAIFIFICPPSMEELEERLRARG---TETEDQILKRLRNAK 282 (346)
Q Consensus 213 ~~~~i~~~~~~~~~~iLD~~~~~~~~l~-------~~~~~~~~ill~~p~~~~l~eRL~~R~---~~~~e~i~~Rl~~~~ 282 (346)
-.+.+... .....+++|+.|....+.+ ........+.-+..+.+.+.+|+..|. +++.+.+++|+..+.
T Consensus 68 v~~rl~~~-d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~ 146 (178)
T COG0563 68 VKERLDEA-DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYH 146 (178)
T ss_pred HHHHHHhh-cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 11222222 1122799999888665542 222233334444444588888988774 788999999999998
Q ss_pred HH----HHhccCCCCceEEEcCCCHHHHHHHHHHHH
Q 019061 283 EE----IKQGKSSGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 283 ~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
++ +.+|. ..|.+..+++++++.+.+.+
T Consensus 147 ~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 147 EQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred hcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence 65 32321 34556668888887766543
No 264
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=3.7e-08 Score=90.76 Aligned_cols=74 Identities=20% Similarity=0.144 Sum_probs=49.6
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC-----ccceeeecCCcc------cccccCCeeEEe
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRAP------RAMEKDGVHYHF 184 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~-----~g~~i~~ttr~~------~~~~~~g~~y~f 184 (346)
.++...+..+.++.+.+|++++|+||||+|||||++.|++.+++. .| .+..-.... ........+|+|
T Consensus 13 ~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~~~~~~~~~~~~~~~i~~v~ 91 (251)
T PRK14249 13 FYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG-AVLLDNENIYSPNLDVVNLRKRVGMVF 91 (251)
T ss_pred EECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCccc-EEEECCEEccccccChHHhhceEEEEe
Confidence 344344555566778899999999999999999999999998875 35 332111110 011134588888
Q ss_pred eChhHH
Q 019061 185 TERSVM 190 (346)
Q Consensus 185 ~s~~~~ 190 (346)
+....+
T Consensus 92 q~~~~~ 97 (251)
T PRK14249 92 QQPNPF 97 (251)
T ss_pred cCCccC
Confidence 886554
No 265
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.86 E-value=1.3e-08 Score=91.63 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=35.5
Q ss_pred EeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccc
Q 019061 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (346)
Q Consensus 123 ~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~ 163 (346)
..+.++.+.+|++++|+||||||||||+++|++..++..|.
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~ 43 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence 34455667899999999999999999999999999888883
No 266
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.86 E-value=1.5e-08 Score=101.45 Aligned_cols=176 Identities=12% Similarity=0.063 Sum_probs=97.2
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCC----cccc-cccCCeeEEeeChhH--HHHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR----APRA-MEKDGVHYHFTERSV--MEKAI 194 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr----~~~~-~~~~g~~y~f~s~~~--~~~~~ 194 (346)
...+.++...+|++++|+|+|||||||++++|++..+|..|..+..... .... ......-++||++.. .+.+
T Consensus 306 Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~- 384 (539)
T COG1123 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM- 384 (539)
T ss_pred eeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc-
Confidence 3445567788999999999999999999999999999987743332111 1111 112235566877532 2222
Q ss_pred hccchhhhhhhhccccCCc-HH----HHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCC
Q 019061 195 KDGKFLEFASVHGNLYGTS-VE----AVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (346)
Q Consensus 195 ~~~~~~e~~~~~~~~yg~~-~~----~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~ 269 (346)
++.+.....-..++.. .. .+.+.++. .... .+-+.....+
T Consensus 385 ---tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~------------------VgL~--------------~~~l~ryP~e 429 (539)
T COG1123 385 ---TVGDILAEPLRIHGGGSGAERRARVAELLEL------------------VGLP--------------PEFLDRYPHE 429 (539)
T ss_pred ---cHHHHHHhHHhhhcccchHHHHHHHHHHHHH------------------cCCC--------------HHHHhcCchh
Confidence 2222222111111110 11 11111111 0000 1123334456
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCceEEEcCC---CHHH-HHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYND---KLEE-CYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 270 ~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~---~le~-~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
.+++.+||+..+++.... ...++.++ .+|. +..++.+++..++..-+...+ ++.|+.+.+..+|
T Consensus 430 lSGGQrQRvaIARALa~~------P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~l-fISHDl~vV~~i~ 497 (539)
T COG1123 430 LSGGQRQRVAIARALALE------PKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYL-FISHDLAVVRYIA 497 (539)
T ss_pred cCcchhHHHHHHHHHhcC------CCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEE-EEeCCHHHHHhhC
Confidence 688999999999877544 23455544 3333 334777777777665433333 7788777766665
No 267
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.7e-09 Score=103.23 Aligned_cols=177 Identities=18% Similarity=0.187 Sum_probs=97.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+....++++.+|+.++++|+|||||||++++|...+. ..| .|.--.... ...-+.-++|++|+..+|..
T Consensus 367 iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG-~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd----- 439 (591)
T KOG0057|consen 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSG-SILIDGQDIKEVSLESLRQSIGVVPQDSVLFND----- 439 (591)
T ss_pred eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCC-cEEECCeeHhhhChHHhhhheeEeCCcccccch-----
Confidence 4445556788999999999999999999999999987 556 443211111 11122458899999888875
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++.. ||.+...-++..+..+.. +....-... .+....-+.+||-.-+.+.+||
T Consensus 440 TIl~NI~-----YGn~sas~eeV~e~~k~a-------~~hd~i~~l------------~~GY~T~VGerG~~LSGGekQr 495 (591)
T KOG0057|consen 440 TILYNIK-----YGNPSASDEEVVEACKRA-------GLHDVISRL------------PDGYQTLVGERGLMLSGGEKQR 495 (591)
T ss_pred hHHHHhh-----cCCCCcCHHHHHHHHHHc-------CcHHHHHhc------------cccchhhHhhcccccccchHHH
Confidence 4455543 333322222222211110 000000000 0122233556676678999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+..++..+... +.-++|+.-.+-|-+. ..++...|.. ...+++.+.++|.-+
T Consensus 496 vslaRa~lKda-~Il~~DEaTS~LD~~T-E~~i~~~i~~---~~~~rTvI~IvH~l~ 547 (591)
T KOG0057|consen 496 VSLARAFLKDA-PILLLDEATSALDSET-EREILDMIMD---VMSGRTVIMIVHRLD 547 (591)
T ss_pred HHHHHHHhcCC-CeEEecCcccccchhh-HHHHHHHHHH---hcCCCeEEEEEecch
Confidence 99999887653 1222333333333322 2333333333 234566667777555
No 268
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=3.4e-08 Score=90.90 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=49.0
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc------cccccCCeeEEee
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFT 185 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~g~~y~f~ 185 (346)
++...+..+.+++..+|++++|+||||+|||||+++|.+..++ ..| .+..-.... ........+|+|+
T Consensus 13 ~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~i~g~~~~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14262 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEG-KIYFKGQDIYDPQLDVTEYRKKVGMVFQ 91 (250)
T ss_pred eCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcce-EEEECCEEcccchhhHHHhhhhEEEEec
Confidence 3334455556677889999999999999999999999998763 456 333211110 0111345788888
Q ss_pred ChhHHH
Q 019061 186 ERSVME 191 (346)
Q Consensus 186 s~~~~~ 191 (346)
....+.
T Consensus 92 ~~~~~~ 97 (250)
T PRK14262 92 KPTPFP 97 (250)
T ss_pred CCccCc
Confidence 765443
No 269
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.86 E-value=4e-08 Score=91.34 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=49.6
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc------cccccCCeeE
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHY 182 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~g~~y 182 (346)
.+.++...+..+.++.+.+|++++|+||||||||||+++|++...+ ..| .+..-.... .......++|
T Consensus 17 ~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~ 95 (264)
T PRK14243 17 NVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEG-KVTFHGKNLYAPDVDPVEVRRRIGM 95 (264)
T ss_pred EEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCce-EEEECCEEccccccChHHHhhhEEE
Confidence 3445544556666777889999999999999999999999987642 456 332211110 0111235788
Q ss_pred EeeChhHH
Q 019061 183 HFTERSVM 190 (346)
Q Consensus 183 ~f~s~~~~ 190 (346)
+|+....+
T Consensus 96 v~q~~~~~ 103 (264)
T PRK14243 96 VFQKPNPF 103 (264)
T ss_pred EccCCccc
Confidence 88875544
No 270
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.85 E-value=5.4e-10 Score=104.15 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=48.4
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-------ccccCCeeEEeeCh
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTER 187 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~g~~y~f~s~ 187 (346)
..++.+.++.+.+|++++|+||||+|||||+++|++..++..| .+..-..... .......+|+|+..
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG-~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 98 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG-NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDS 98 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEeccccChhHHHHHHhcEEEEEcCh
Confidence 3455666677889999999999999999999999999988888 4432211110 11234678888875
No 271
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.85 E-value=1.6e-08 Score=106.66 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=85.8
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|+.++++||||||||||++.|.+.++|..| .+.....+.. ...+..++|++|+..+|..
T Consensus 494 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g----- 567 (710)
T TIGR03796 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG-EILFDGIPREEIPREVLANSVAMVDQDIFLFEG----- 567 (710)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEeHHHCCHHHHHhheeEEecCChhhhc-----
Confidence 44445567789999999999999999999999999999888 5543222221 1123568899998877653
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++..+... ..+.+.+.++++... +...-... ...++..+..+|..-+.+.+||
T Consensus 568 Ti~eNi~l~~~--~~~~~~i~~al~~~~----------l~~~i~~l------------p~gl~t~i~e~G~~LSGGQrQR 623 (710)
T TIGR03796 568 TVRDNLTLWDP--TIPDADLVRACKDAA----------IHDVITSR------------PGGYDAELAEGGANLSGGQRQR 623 (710)
T ss_pred cHHHHhhCCCC--CCCHHHHHHHHHHhC----------CHHHHHhC------------cCcccceeccCCCCCCHHHHHH
Confidence 56666654321 123344444333211 00000000 1234445556676778999999
Q ss_pred HHHHHHHHHh
Q 019061 278 LRNAKEEIKQ 287 (346)
Q Consensus 278 l~~~~~~i~~ 287 (346)
+..+++.+..
T Consensus 624 iaLARall~~ 633 (710)
T TIGR03796 624 LEIARALVRN 633 (710)
T ss_pred HHHHHHHhhC
Confidence 9999988765
No 272
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=4.8e-08 Score=91.38 Aligned_cols=76 Identities=20% Similarity=0.195 Sum_probs=50.2
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCc------ccccccCCeeE
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRA------PRAMEKDGVHY 182 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~------~~~~~~~g~~y 182 (346)
.+.++...++.+.++.+.+|++++|+||||||||||+++|++..++ ..| .+..-... .......+++|
T Consensus 27 ~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~l~~~~~~~~~~~~~i~~ 105 (274)
T PRK14265 27 KVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEG-RLLYRDRNIYDSQINSVKLRRQVGM 105 (274)
T ss_pred EEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCc-eEEECCEecccccchhHHHhhcEEE
Confidence 3445544556666677889999999999999999999999998653 356 33321111 01111346788
Q ss_pred EeeChhHH
Q 019061 183 HFTERSVM 190 (346)
Q Consensus 183 ~f~s~~~~ 190 (346)
+|+....+
T Consensus 106 v~q~~~l~ 113 (274)
T PRK14265 106 VFQRPNPF 113 (274)
T ss_pred EccCCccc
Confidence 88876544
No 273
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.85 E-value=7.9e-10 Score=112.67 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=45.6
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----c-c-cccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----R-A-MEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~-~-~~~~g~~y~f~s~ 187 (346)
.++.+.++...+|++++|+||||||||||+++|++..+ ..| .|....+.. . . ......+|+|+..
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~ 371 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQG-EIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCc-EEEECCEEccccchhhHHHhhhceEEEEeCc
Confidence 44555667788999999999999999999999999985 567 443221111 0 0 0124578999875
No 274
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=4.6e-08 Score=88.75 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=48.6
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~ 191 (346)
+..+.++...+|++++|+||||||||||+++|++..++..| .+....... ........+|.|+...++.
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG-QILIDGIDIRDISRKSLRSMIGVVLQDTFLFS 90 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEeHHHcCHHHHhhhEEEecCCchhhh
Confidence 44445567789999999999999999999999999988888 443221111 1111345788888765543
No 275
>PLN03211 ABC transporter G-25; Provisional
Probab=98.85 E-value=8.9e-09 Score=107.37 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=60.9
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC--ccceeeecCCcccccccCCeeEEeeChhH
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM--FGFSVSHTTRAPRAMEKDGVHYHFTERSV 189 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~--~g~~i~~ttr~~~~~~~~g~~y~f~s~~~ 189 (346)
++.+.++.+.+..+.++...+|++++|+||||||||||+++|++..++. .| .+.....+.........+|+++....
T Consensus 73 ~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG-~I~inG~~~~~~~~~~i~yv~Q~~~l 151 (659)
T PLN03211 73 DETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTG-TILANNRKPTKQILKRTGFVTQDDIL 151 (659)
T ss_pred cccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EEEECCEECchhhccceEEECccccc
Confidence 3445666666777777888899999999999999999999999987763 56 44322211111112347888887655
Q ss_pred HHHHHhccchhhhhhhh
Q 019061 190 MEKAIKDGKFLEFASVH 206 (346)
Q Consensus 190 ~~~~~~~~~~~e~~~~~ 206 (346)
++.+ ++.|+..+.
T Consensus 152 ~~~l----TV~E~l~~~ 164 (659)
T PLN03211 152 YPHL----TVRETLVFC 164 (659)
T ss_pred CCcC----CHHHHHHHH
Confidence 5443 556665554
No 276
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.84 E-value=1.7e-08 Score=98.97 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=66.6
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeC
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTE 186 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s 186 (346)
++.|.|+.-+...+.++...+|++-+|+|.||+|||||+++|.+.+.|..| .|..-.++ +......|++.++|.
T Consensus 9 ~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~G-eI~v~G~~v~~~sP~dA~~~GIGMVhQH 87 (501)
T COG3845 9 GITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG-EIRVDGKEVRIKSPRDAIRLGIGMVHQH 87 (501)
T ss_pred ccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcc-eEEECCEEeccCCHHHHHHcCCcEEeec
Confidence 455777744444445578889999999999999999999999999999988 55432222 222234588899999
Q ss_pred hhHHHHHHhccchhhhhhhh
Q 019061 187 RSVMEKAIKDGKFLEFASVH 206 (346)
Q Consensus 187 ~~~~~~~~~~~~~~e~~~~~ 206 (346)
+.+++.+ ++.|+.-..
T Consensus 88 F~Lv~~l----TV~ENiiLg 103 (501)
T COG3845 88 FMLVPTL----TVAENIILG 103 (501)
T ss_pred ccccccc----chhhhhhhc
Confidence 8887776 777776543
No 277
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=3.8e-08 Score=94.53 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=47.1
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC----CCccceeeecC----C-ccc---ccccCCeeEEeeCh
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP----SMFGFSVSHTT----R-APR---AMEKDGVHYHFTER 187 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~----~~~g~~i~~tt----r-~~~---~~~~~g~~y~f~s~ 187 (346)
..+..+.++.+.+|++++|+|+||||||||+++|.+..+ +..| .+..-. + ... ......++|+||+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD-RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcce-EEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 445566667888999999999999999999999999986 3456 443211 1 111 11123688999986
Q ss_pred h
Q 019061 188 S 188 (346)
Q Consensus 188 ~ 188 (346)
.
T Consensus 99 ~ 99 (330)
T PRK15093 99 Q 99 (330)
T ss_pred c
Confidence 4
No 278
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2.6e-08 Score=92.74 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=49.6
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCcc------cccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~g~~y~ 183 (346)
+.++...+..+.++...+|++++|+||||||||||+++|++..+ +..| .+....... ......+.+|+
T Consensus 29 ~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v 107 (268)
T PRK14248 29 IYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG-EILYEGLNILDSNINVVNLRREIGMV 107 (268)
T ss_pred EEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCce-EEEECCEEcccccccHHHHhccEEEE
Confidence 33444455555667788999999999999999999999999753 4566 443211111 01123468899
Q ss_pred eeChhHH
Q 019061 184 FTERSVM 190 (346)
Q Consensus 184 f~s~~~~ 190 (346)
|+....+
T Consensus 108 ~q~~~~~ 114 (268)
T PRK14248 108 FQKPNPF 114 (268)
T ss_pred ecCCccC
Confidence 8876544
No 279
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.84 E-value=3.8e-08 Score=91.86 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=49.0
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCcc------cccccCCeeEEe
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHF 184 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~g~~y~f 184 (346)
.++...+..+.++.+.+|++++|+|+||||||||+++|.+.++ +..| .+..-.... ........+|+|
T Consensus 33 ~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~ 111 (271)
T PRK14238 33 WYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTG-KILYRDQNIFDKSYSVEELRTNVGMVF 111 (271)
T ss_pred EECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce-eEEECCEEcccccccHHHHhhhEEEEe
Confidence 3433344555556778999999999999999999999999876 4667 443211110 111124578888
Q ss_pred eChhHH
Q 019061 185 TERSVM 190 (346)
Q Consensus 185 ~s~~~~ 190 (346)
+....+
T Consensus 112 q~~~~~ 117 (271)
T PRK14238 112 QKPNPF 117 (271)
T ss_pred cCCccc
Confidence 876554
No 280
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.4e-08 Score=103.55 Aligned_cols=133 Identities=15% Similarity=0.174 Sum_probs=78.6
Q ss_pred ccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc----cccCCeeEEeeChhHHHHHHhccchh
Q 019061 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFL 200 (346)
Q Consensus 125 ~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~g~~y~f~s~~~~~~~~~~~~~~ 200 (346)
+.++.+.+|++++|+||||+||||+++.|...+.|..| .|..-..+.+. .....++++-|.+-+|.. +..
T Consensus 486 ~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG-~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-----sI~ 559 (716)
T KOG0058|consen 486 NLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG-RILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-----SIR 559 (716)
T ss_pred CceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC-eEEECCeehhhcCHHHHHHHeeeeeccceeecc-----cHH
Confidence 34456789999999999999999999999999999988 43322222111 112345666565555432 455
Q ss_pred hhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHH
Q 019061 201 EFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (346)
Q Consensus 201 e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~ 280 (346)
|+..|... ..+.+.+..+.+.... ..-+.. . ++..+.-...+|...+.+.+||+++
T Consensus 560 eNI~YG~~--~~t~e~i~~AAk~ANa---------h~FI~~-~------------p~gY~T~VGEkG~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 560 ENIAYGLD--NATDEEIEAAAKMANA---------HEFITN-F------------PDGYNTVVGEKGSQLSGGQKQRIAI 615 (716)
T ss_pred HHHhcCCC--CCCHHHHHHHHHHhCh---------HHHHHh-C------------ccccccccCCccccccchHHHHHHH
Confidence 65554332 2333444443332110 000110 0 1223333455666678999999999
Q ss_pred HHHHHHh
Q 019061 281 AKEEIKQ 287 (346)
Q Consensus 281 ~~~~i~~ 287 (346)
+++.+..
T Consensus 616 ARALlr~ 622 (716)
T KOG0058|consen 616 ARALLRN 622 (716)
T ss_pred HHHHhcC
Confidence 9988765
No 281
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=3.8e-08 Score=94.43 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=97.7
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc-----c-ccccCCeeEEeeChhH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP-----R-AMEKDGVHYHFTERSV 189 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~-----~-~~~~~g~~y~f~s~~~ 189 (346)
.++.+.++.+.+|++++|+||||||||||+++|.+..++ ..| .+..-.... . .......+|+|+....
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G-~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEG-EIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 345556677889999999999999999999999998753 356 332111111 0 1112458889888655
Q ss_pred HHHHHhccchhhhhhhhccccCCcHHHH-HHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCC
Q 019061 190 MEKAIKDGKFLEFASVHGNLYGTSVEAV-EAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (346)
Q Consensus 190 ~~~~~~~~~~~e~~~~~~~~yg~~~~~i-~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~ 268 (346)
|. ++..++..+.....+...+.. .+.... .++.... ...++..+..++.
T Consensus 175 ~~-----~ti~eNi~~~~~~~~~~~~~~~~~~~~~--------------~l~~~~L-----------~~~l~~~~~~~~~ 224 (329)
T PRK14257 175 FE-----MSIFDNVAYGPRNNGINDRKILEKIVEK--------------SLKSAAL-----------WDEVKDDLDKAGN 224 (329)
T ss_pred CC-----CcHHHHHHhHHHhcCCChHHHHHHHHHH--------------HHHHcCC-----------cchhhhhhhCCcc
Confidence 42 255555543221112211111 100000 0000000 0112334455666
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhh
Q 019061 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSL 338 (346)
Q Consensus 269 ~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~ 338 (346)
..+.+.++|+..+++.+...+ .-++|.....-|... ...+.+.|..+.+ ..+++++.|..+.+..
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~-IlLLDEPts~LD~~~-~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~ 289 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPE-VLLMDEPTSALDPIA-TAKIEELILELKK---KYSIIIVTHSMAQAQR 289 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCC-EEEEeCCcccCCHHH-HHHHHHHHHHHhc---CCEEEEEeCCHHHHHH
Confidence 668899999999987765421 112233333335533 3457777776643 3445467776665443
No 282
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.84 E-value=3.7e-08 Score=91.70 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=51.0
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc------cccccCCeeE
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHY 182 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~g~~y 182 (346)
.+.++...++.+.+++..+|++++|+||||||||||+++|.+.+++ ..| .+..-.... ......+.+|
T Consensus 27 ~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~ 105 (267)
T PRK14237 27 HVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG-QILYRGIDINRKEINVYEMRKHIGM 105 (267)
T ss_pred EEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce-EEEECCEEcccccCChHHHhcceEE
Confidence 3445545556666677889999999999999999999999998753 566 342211110 1111346888
Q ss_pred EeeChhHH
Q 019061 183 HFTERSVM 190 (346)
Q Consensus 183 ~f~s~~~~ 190 (346)
+|+....+
T Consensus 106 v~q~~~~~ 113 (267)
T PRK14237 106 VFQRPNPF 113 (267)
T ss_pred EecCCccc
Confidence 88876554
No 283
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1e-08 Score=102.47 Aligned_cols=173 Identities=14% Similarity=0.122 Sum_probs=104.6
Q ss_pred EeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecC---Cc-ccccccCCeeEEeeChhHHHHHHhccc
Q 019061 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT---RA-PRAMEKDGVHYHFTERSVMEKAIKDGK 198 (346)
Q Consensus 123 ~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~tt---r~-~~~~~~~g~~y~f~s~~~~~~~~~~~~ 198 (346)
..+.++...+|+.++|+|+||||||||++.|.+..++..| .+.... ++ .........+|+.+++.+|.. +
T Consensus 337 l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G-~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-----T 410 (559)
T COG4988 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG-EIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-----T 410 (559)
T ss_pred cCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc-eEEECCccccccCHHHHHhHeeeeCCCCccccc-----c
Confidence 3334466789999999999999999999999999999888 655321 11 122334557788777765543 5
Q ss_pred hhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHH
Q 019061 199 FLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (346)
Q Consensus 199 ~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl 278 (346)
+.|+..+... ..+.+++.++++... +..+ +.. .+.++..+..+|..-+.+.+||+
T Consensus 411 ireNi~l~~~--~~s~e~i~~al~~a~----------l~~~-----------v~~--p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 411 IRENILLARP--DASDEEIIAALDQAG----------LLEF-----------VPK--PDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred HHHHhhccCC--cCCHHHHHHHHHHhc----------HHHh-----------hcC--CCcccchhccCCCCCCHHHHHHH
Confidence 5666554321 133455555544311 1111 011 24566667777777789999999
Q ss_pred HHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecc
Q 019061 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVT 331 (346)
Q Consensus 279 ~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~ 331 (346)
..+++.+... .--++|+.-++-|.|. .+.+.+.+.++.+ +.+.+.+.|
T Consensus 466 aLARAll~~~-~l~llDEpTA~LD~et-E~~i~~~l~~l~~---~ktvl~itH 513 (559)
T COG4988 466 ALARALLSPA-SLLLLDEPTAHLDAET-EQIILQALQELAK---QKTVLVITH 513 (559)
T ss_pred HHHHHhcCCC-CEEEecCCccCCCHhH-HHHHHHHHHHHHh---CCeEEEEEc
Confidence 9998776541 1223444445556654 3445556665543 344434444
No 284
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.83 E-value=6.6e-08 Score=84.25 Aligned_cols=161 Identities=18% Similarity=0.095 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHH----HHHhccchhhhh-hhh
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME----KAIKDGKFLEFA-SVH 206 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~----~~~~~~~~~e~~-~~~ 206 (346)
+|++++|.|+|||||||+++.|....+..+ .|..+.. |.+.....+. .....+.+.++. ...
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~----~~~~~D~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPW----LHFGVDS---------FIEALPLKCQDAEGGIEFDGDGGVSPGPEF 67 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCc----cccCccH---------HHHhcChhhcccccccccCccCCcccchHH
Confidence 478999999999999999999988754211 1111100 0000000000 000000000000 123
Q ss_pred ccccCCcHHHHHHHHHhCCceEEEecHH---HHHH-HHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019061 207 GNLYGTSVEAVEAVADAGKRCILDIDVQ---GARS-VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (346)
Q Consensus 207 ~~~yg~~~~~i~~~~~~~~~~iLD~~~~---~~~~-l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~ 282 (346)
+..|+...+.+...+..|..+++|.... ..+. ++......+..+.+.++.+++.+|+..|++... ++...+
T Consensus 68 ~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~-----~~~~~~ 142 (175)
T cd00227 68 RLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVP-----GQARKQ 142 (175)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccc-----hHHHHH
Confidence 3456666677788888999999996322 2222 222222233333344447899999999975432 222221
Q ss_pred HHHHhccCCCCceEEEcCC--CHHHHHHHHHH
Q 019061 283 EEIKQGKSSGIFDHILYND--KLEECYENLKV 312 (346)
Q Consensus 283 ~~i~~~~~~~~~~~Vi~n~--~le~~~~~l~~ 312 (346)
.. .+.....++.++.+. +++++.+++.+
T Consensus 143 ~~--~~~~~~~~dl~iDts~~s~~e~a~~i~~ 172 (175)
T cd00227 143 AR--VVHAGVEYDLEVDTTHKTPIECARAIAA 172 (175)
T ss_pred HH--HhcCCCcceEEEECCCCCHHHHHHHHHH
Confidence 11 112223346666554 68777666554
No 285
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=4.5e-08 Score=90.64 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC--C---CccceeeecCCcc------cccccCCeeE
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHY 182 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~g~~y 182 (346)
.+.++...+..+.++.+.+|++++|+||||||||||+++|++..+ + ..| .+..-.... ........+|
T Consensus 19 ~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~ 97 (259)
T PRK14274 19 NLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTG-EMNYNGSNILKGKVDLVELRKNIGM 97 (259)
T ss_pred EEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce-EEEECCEEccccccCHHHHhhceEE
Confidence 344554455566667788999999999999999999999999875 2 356 332111110 1111245788
Q ss_pred EeeChhHH
Q 019061 183 HFTERSVM 190 (346)
Q Consensus 183 ~f~s~~~~ 190 (346)
+|+....+
T Consensus 98 v~q~~~~~ 105 (259)
T PRK14274 98 VFQKGNPF 105 (259)
T ss_pred EecCCccc
Confidence 88876544
No 286
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=7.9e-10 Score=102.61 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=37.5
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~ 160 (346)
+.++...++.+.++...+|++++|+|+||+|||||+++|.+..++.
T Consensus 15 ~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~ 60 (261)
T PRK14258 15 FYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE 60 (261)
T ss_pred EEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3344444555666778899999999999999999999999998863
No 287
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.83 E-value=5.2e-10 Score=113.50 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=42.2
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeC
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTE 186 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s 186 (346)
+...+|++++|+||||||||||+++|++..++..| .+...... .......+.+|+|+.
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK09700 284 FSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGG-EIRLNGKDISPRSPLDAVKKGMAYITES 346 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-eEEECCEECCCCCHHHHHHCCcEEccCc
Confidence 45678999999999999999999999999988888 55432111 111112457888886
No 288
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.83 E-value=3.3e-09 Score=110.67 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=84.2
Q ss_pred EeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhccc
Q 019061 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGK 198 (346)
Q Consensus 123 ~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~~~ 198 (346)
..+.++++.+|+.++++|+||||||||++.|.+.+.|..| .|..-..+. ...-+..++|+.|+.-+|.. +
T Consensus 489 L~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G-~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-----S 562 (709)
T COG2274 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG-RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-----S 562 (709)
T ss_pred hhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEeHHhcCHHHHHhheeEEcccchhhcC-----c
Confidence 3334466789999999999999999999999999999988 554222111 11223468888887665543 5
Q ss_pred hhhhhhhhccccCCcHHHHHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 199 FLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 199 ~~e~~~~~~~~yg~~~~~i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
..|+.....-. .+.+.+.+++.. +.. ..+... +..++.++.+.|..-+.+.+||
T Consensus 563 I~eNi~l~~p~--~~~e~i~~A~~~ag~~----------~fI~~l-------------P~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 563 IRENIALGNPE--ATDEEIIEAAQLAGAH----------EFIENL-------------PMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred HHHHHhcCCCC--CCHHHHHHHHHHhCcH----------HHHHhc-------------ccccccccccCCCCCCHHHHHH
Confidence 55665443211 223333333221 110 011110 2355667778888889999999
Q ss_pred HHHHHHHHHh
Q 019061 278 LRNAKEEIKQ 287 (346)
Q Consensus 278 l~~~~~~i~~ 287 (346)
+..+++.+..
T Consensus 618 lalARaLl~~ 627 (709)
T COG2274 618 LALARALLSK 627 (709)
T ss_pred HHHHHHhccC
Confidence 9999977654
No 289
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=8.5e-10 Score=95.62 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=46.7
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecC
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT 169 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~tt 169 (346)
++.-.-|..+++.+.++....|+.+.+.||||+|||||+++|++...|..| .|...+
T Consensus 7 ~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G-~v~~~~ 63 (209)
T COG4133 7 NLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAG-EVYWQG 63 (209)
T ss_pred hhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCC-eEEecC
Confidence 344445667777777788889999999999999999999999999999888 665443
No 290
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.83 E-value=6.9e-08 Score=88.91 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=48.6
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC--C---CccceeeecCCcc------cccccCCeeEEe
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHYHF 184 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~g~~y~f 184 (346)
.++...+..+.++...+|++++|+||||||||||+++|.+..+ + ..| .+....... ......+.+|+|
T Consensus 14 ~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~ 92 (252)
T PRK14239 14 YYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITG-SIVYNGHNIYSPRTDTVDLRKEIGMVF 92 (252)
T ss_pred EECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccc-eEEECCEECcCcccchHhhhhcEEEEe
Confidence 3443445555667778999999999999999999999998743 4 256 443211110 011134688888
Q ss_pred eChhHHH
Q 019061 185 TERSVME 191 (346)
Q Consensus 185 ~s~~~~~ 191 (346)
+....+.
T Consensus 93 q~~~~~~ 99 (252)
T PRK14239 93 QQPNPFP 99 (252)
T ss_pred cCCccCc
Confidence 8765543
No 291
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=9.5e-10 Score=101.35 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=49.6
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCcc------cccccCCeeEEe
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHF 184 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~g~~y~f 184 (346)
.++...+..+.++.+.+|++++|+||||||||||+++|.+... +..| .+....... ......+.+|+|
T Consensus 14 ~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~ 92 (251)
T PRK14244 14 WYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG-ELDIDGIDVYSVDTNVVLLRAKVGMVF 92 (251)
T ss_pred EECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcce-EEEECCEehHhcccchHHHhhhEEEEe
Confidence 3443445555667788999999999999999999999999865 2466 443211111 011234678998
Q ss_pred eChhHHH
Q 019061 185 TERSVME 191 (346)
Q Consensus 185 ~s~~~~~ 191 (346)
+....+.
T Consensus 93 q~~~~~~ 99 (251)
T PRK14244 93 QKPNPFP 99 (251)
T ss_pred cCccccc
Confidence 8765543
No 292
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.82 E-value=1.2e-08 Score=104.89 Aligned_cols=177 Identities=15% Similarity=0.115 Sum_probs=100.5
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc---c-cccccCCeeEEeeChhHHHHHHhc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA---P-RAMEKDGVHYHFTERSVMEKAIKD 196 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~---~-~~~~~~g~~y~f~s~~~~~~~~~~ 196 (346)
.+..+.++.+.+|+.++++|||||||||+++.|.+.+++..| .|.-...+ . ....+..++|++|+..+|..
T Consensus 343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G-~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~---- 417 (567)
T COG1132 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG-EILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG---- 417 (567)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCEehhhcCHHHHHHhccEEcccceeecc----
Confidence 344445566789999999999999999999999999999888 44321111 1 11223457788887766652
Q ss_pred cchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHH
Q 019061 197 GKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (346)
Q Consensus 197 ~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~ 276 (346)
+..++..+...- .+.+.+.++++... ....+.+. ++.++..+.++|..-+.+.+|
T Consensus 418 -TI~~NI~~g~~~--at~eei~~a~k~a~---------~~d~I~~l-------------p~g~dt~vge~G~~LSgGQrQ 472 (567)
T COG1132 418 -TIRENIALGRPD--ATDEEIEEALKLAN---------AHEFIANL-------------PDGYDTIVGERGVNLSGGQRQ 472 (567)
T ss_pred -cHHHHHhcCCCC--CCHHHHHHHHHHhC---------hHHHHHhC-------------cccccceecCCCccCCHHHHH
Confidence 556665543221 23344554443311 00011110 123455566677777899999
Q ss_pred HHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccc
Q 019061 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTY 332 (346)
Q Consensus 277 Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~ 332 (346)
|+..+++.+... +.-.+|+--.+-|.+. .+.+.+.+..+. ++++.+.+.|-
T Consensus 473 rlaiARall~~~-~ILILDEaTSalD~~t-E~~I~~~l~~l~---~~rT~iiIaHR 523 (567)
T COG1132 473 RLAIARALLRNP-PILILDEATSALDTET-EALIQDALKKLL---KGRTTLIIAHR 523 (567)
T ss_pred HHHHHHHHhcCC-CEEEEeccccccCHHh-HHHHHHHHHHHh---cCCEEEEEecc
Confidence 999999887652 1111222222223322 234555555443 23344345554
No 293
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.82 E-value=3.7e-08 Score=88.78 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=47.4
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~ 190 (346)
++.+.++...+|++++|+||||||||||+++|.+..++..| .+....... ........+|+|+....+
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG-SVLLDGTDIRQLDPADLRRNIGYVPQDVTLF 90 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-eEEECCEEhHHCCHHHHHhhEEEeCCCCccc
Confidence 44445566789999999999999999999999999988888 443222111 001123577888876544
No 294
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.82 E-value=2.1e-08 Score=105.77 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=101.9
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|+.++|+||||||||||++.|.+.++|..| .|.....+.. ...+...+|++|+..+|..
T Consensus 489 iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g----- 562 (708)
T TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG-EILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG----- 562 (708)
T ss_pred ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-EEEECCEEHHHcCHHHHHHheEEEecCceehhH-----
Confidence 44455567889999999999999999999999999999888 5543322211 1123468899998877754
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++..+.... ..+.+.+.++++.... ...+... +..++..+..+|..-+.+.+||
T Consensus 563 TI~eNi~l~~~~-~~~~~~i~~a~~~a~l---------~~~i~~l-------------p~gldt~i~e~G~~LSgGQrQR 619 (708)
T TIGR01193 563 SILENLLLGAKE-NVSQDEIWAACEIAEI---------KDDIENM-------------PLGYQTELSEEGSSISGGQKQR 619 (708)
T ss_pred HHHHHHhccCCC-CCCHHHHHHHHHHhCC---------HHHHHhc-------------ccccCcEecCCCCCCCHHHHHH
Confidence 566666654211 1233444443332110 0000000 1233444555666678999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYP 333 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~ 333 (346)
+..+++.+... +.-++|+...+-|.+. .+.+.+.+..+ . +.+.+.+.|.+
T Consensus 620 ialARall~~p-~iliLDE~Ts~LD~~t-e~~i~~~L~~~---~-~~T~IiitHr~ 669 (708)
T TIGR01193 620 IALARALLTDS-KVLILDESTSNLDTIT-EKKIVNNLLNL---Q-DKTIIFVAHRL 669 (708)
T ss_pred HHHHHHHhhCC-CEEEEeCccccCCHHH-HHHHHHHHHHh---c-CCEEEEEecch
Confidence 99999887652 1112333333334432 34555555543 2 33444566644
No 295
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.82 E-value=1.1e-09 Score=100.01 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=47.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~ 190 (346)
+..+.++...+|++++|+||||||||||+++|.+..++..| .+..-... .........+|+|+...++
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG-EILLDGVDIRDLNLRWLRSQIGLVSQEPVLF 89 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC-EEEECCEehhhcCHHHHHhhEEEECCchhhh
Confidence 34445567789999999999999999999999999988888 44321111 1111123578888876554
No 296
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=5e-10 Score=99.15 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=34.5
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc--CCCcc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFG 162 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~--~~~~g 162 (346)
.+..+.++...+|++++|+||||||||||+++|.+.. ++..|
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G 64 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITG 64 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcce
Confidence 3455556777899999999999999999999999975 35566
No 297
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=4.4e-08 Score=92.21 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=49.7
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCc------ccccccCCeeE
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRA------PRAMEKDGVHY 182 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~------~~~~~~~g~~y 182 (346)
.+.++...++.+.++.+.+|++++|+||||||||||+++|.+... +..| .+...... .......+.+|
T Consensus 46 ~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G-~I~~~g~~i~~~~~~~~~~~~~i~~ 124 (286)
T PRK14275 46 SIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTG-ALMFDGEDIYGKFTDEVLLRKKIGM 124 (286)
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCce-EEEECCEEhhhcccchHHhhhcEEE
Confidence 344444445555667788999999999999999999999999753 3566 33321111 01112346788
Q ss_pred EeeChhHH
Q 019061 183 HFTERSVM 190 (346)
Q Consensus 183 ~f~s~~~~ 190 (346)
+|+...++
T Consensus 125 v~q~~~l~ 132 (286)
T PRK14275 125 VFQKPNPF 132 (286)
T ss_pred ECCCCCCC
Confidence 88876544
No 298
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.81 E-value=1.8e-08 Score=103.52 Aligned_cols=179 Identities=15% Similarity=0.088 Sum_probs=99.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|+.++++|+||+|||||++.|.+.+++..| .+.....+.. .......+|++|+..+|..
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~----- 420 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSG-QILLDGHDLADYTLASLRRQVALVSQDVVLFND----- 420 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEeHHhcCHHHHHhhceEEccCcccccc-----
Confidence 33444566779999999999999999999999999999888 5543322211 1123457899888766643
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
++.++..+...- ..+.+.+.++++.. ++...-... .+.++.++...+..-+.+.+||
T Consensus 421 Ti~~Ni~~~~~~-~~~~~~i~~~l~~~----------~l~~~i~~l------------p~gldt~i~~~g~~LSgGqrQR 477 (571)
T TIGR02203 421 TIANNIAYGRTE-QADRAEIERALAAA----------YAQDFVDKL------------PLGLDTPIGENGVLLSGGQRQR 477 (571)
T ss_pred cHHHHHhcCCCC-CCCHHHHHHHHHHc----------ChHHHHHhC------------cCcccceecCCCCcCCHHHHHH
Confidence 566666543210 12234444433321 111100000 1233444555566668899999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+..++..+... +.-++|+...+-|.+. .+.+.+.+.++. +..+.+.+.|.++
T Consensus 478 iaLARall~~~-~illLDEpts~LD~~~-~~~i~~~L~~~~---~~~tiIiitH~~~ 529 (571)
T TIGR02203 478 LAIARALLKDA-PILILDEATSALDNES-ERLVQAALERLM---QGRTTLVIAHRLS 529 (571)
T ss_pred HHHHHHHhcCC-CEEEEeCccccCCHHH-HHHHHHHHHHHh---CCCEEEEEehhhH
Confidence 99998776542 1111233333333322 234555555442 3445546666443
No 299
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.81 E-value=4e-10 Score=99.97 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=37.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc--CCCccceee
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVS 166 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~--~~~~g~~i~ 166 (346)
+....++...+|++++|+||||+|||||+++|++.. ++..| .+.
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G-~i~ 69 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG-EVL 69 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce-EEE
Confidence 445555677899999999999999999999999998 88777 443
No 300
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=4.4e-08 Score=90.74 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=49.6
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc-----c-ccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP-----R-AMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~-----~-~~~~~g~~y~ 183 (346)
+.++...+..+.++.+.+|++++|+|+||||||||+++|++..++ ..| .+..-.... . .....+.+|+
T Consensus 15 ~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v 93 (259)
T PRK14260 15 FYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG-VVDFFGQNIYDPRININRLRRQIGMV 93 (259)
T ss_pred EEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccce-EEEECCEeccccccchHhhhhheEEE
Confidence 334434455556677789999999999999999999999998764 246 333211110 0 1112468888
Q ss_pred eeChhHHH
Q 019061 184 FTERSVME 191 (346)
Q Consensus 184 f~s~~~~~ 191 (346)
|+....|.
T Consensus 94 ~q~~~l~~ 101 (259)
T PRK14260 94 FQRPNPFP 101 (259)
T ss_pred ecccccCC
Confidence 88765543
No 301
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.81 E-value=5.1e-10 Score=100.12 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=47.4
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~ 190 (346)
+..+.++.+.+|++++|+||||+|||||+++|++..++..| .+..-... .......+++|+|+...++
T Consensus 23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG-KIEIDGIDISTIPLEDLRSSLTIIPQDPTLF 94 (207)
T ss_pred cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEhHHCCHHHHHhhEEEEecCCccc
Confidence 34445566779999999999999999999999999988888 44321111 1111234578888876443
No 302
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.81 E-value=7.5e-10 Score=100.35 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=94.1
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|++++|+||||+|||||+++|++..++..| .+....... ........+|+|+...++..
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~----- 102 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG-QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR----- 102 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc-EEEECCCchHHcCHHHHHhhEEEEecccHHHhh-----
Confidence 44445567789999999999999999999999999998888 444322111 11122457888888655432
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
++.++..+... ......+........ .. ..+... . ..+...+..+....+.+.++|
T Consensus 103 tv~~nl~~~~~--~~~~~~~~~~~~~~~-------~~--~~l~~l-~------------~gl~~~~~~~~~~LSgG~~qr 158 (226)
T cd03248 103 SLQDNIAYGLQ--SCSFECVKEAAQKAH-------AH--SFISEL-A------------SGYDTEVGEKGSQLSGGQKQR 158 (226)
T ss_pred hHHHHhccccC--CCCHHHHHHHHHHcC-------cH--HHHHhc-c------------ccccchhhcCCCcCCHHHHHH
Confidence 44444433211 111111111111000 00 001100 0 011112233334457889999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccch
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLT 336 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~ 336 (346)
+..++..+... ..-++|+....-|... .+.+.+++..+.. ...++++.|+++.+
T Consensus 159 v~laral~~~p-~llllDEPt~~LD~~~-~~~l~~~l~~~~~---~~tii~~sh~~~~~ 212 (226)
T cd03248 159 VAIARALIRNP-QVLILDEATSALDAES-EQQVQQALYDWPE---RRTVLVIAHRLSTV 212 (226)
T ss_pred HHHHHHHhcCC-CEEEEeCCcccCCHHH-HHHHHHHHHHHcC---CCEEEEEECCHHHH
Confidence 99988776541 1111222222224433 4456667766642 34554677776654
No 303
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=7.2e-08 Score=90.28 Aligned_cols=78 Identities=17% Similarity=0.090 Sum_probs=52.9
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc-----cccccCCeeE
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP-----RAMEKDGVHY 182 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~-----~~~~~~g~~y 182 (346)
+.+.++...+..+.++.+.+|++++|+||||+|||||+++|.+..++ ..| .+....... .......++|
T Consensus 27 l~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~i~~ 105 (276)
T PRK14271 27 LTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG-DVLLGGRSIFNYRDVLEFRRRVGM 105 (276)
T ss_pred EEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCce-EEEECCEEccccchhHHHhhheEE
Confidence 34556555666666777889999999999999999999999999875 456 443211111 1112345788
Q ss_pred EeeChhHHH
Q 019061 183 HFTERSVME 191 (346)
Q Consensus 183 ~f~s~~~~~ 191 (346)
+|+....|.
T Consensus 106 v~q~~~l~~ 114 (276)
T PRK14271 106 LFQRPNPFP 114 (276)
T ss_pred eccCCccCC
Confidence 888765443
No 304
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.81 E-value=6.7e-08 Score=90.26 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=50.8
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCcc------cccccCCeeE
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHY 182 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~g~~y 182 (346)
.+.++...++.+.++.+.+|++++|+||||+|||||+++|++..++ ..| .+....... ......+.+|
T Consensus 32 ~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G-~i~i~g~~i~~~~~~~~~~~~~i~~ 110 (272)
T PRK14236 32 NLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEG-EIRLDGQNIYDKKVDVAELRRRVGM 110 (272)
T ss_pred EEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCce-EEEECCEECcccccCHHHHhccEEE
Confidence 3445444555556677889999999999999999999999998763 566 332111110 0111246788
Q ss_pred EeeChhHHH
Q 019061 183 HFTERSVME 191 (346)
Q Consensus 183 ~f~s~~~~~ 191 (346)
+|+....+.
T Consensus 111 v~q~~~l~~ 119 (272)
T PRK14236 111 VFQRPNPFP 119 (272)
T ss_pred EecCCccCc
Confidence 888765443
No 305
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.80 E-value=1.2e-09 Score=94.30 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=38.0
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
|+...+....++...+|++++|+||||+|||||+++|.+..++..|
T Consensus 10 ~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 55 (163)
T cd03216 10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG 55 (163)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3333445555677889999999999999999999999999988777
No 306
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=5.2e-08 Score=89.71 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=47.7
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccc---cCC--CccceeeecCCcc------cccccCCeeEEe
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE---FPS--MFGFSVSHTTRAP------RAMEKDGVHYHF 184 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~---~~~--~~g~~i~~ttr~~------~~~~~~g~~y~f 184 (346)
.++...+....++...+|++++|+||||||||||+++|++. .++ ..| .+..-.... ......+.+|+|
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~ 90 (250)
T PRK14245 12 WYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG-EIRIDGRNIYDKGVQVDELRKNVGMVF 90 (250)
T ss_pred EECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCce-EEEECCEecccccccHHHHhhheEEEe
Confidence 34444455556677789999999999999999999999885 343 256 332211110 111234688988
Q ss_pred eChhHH
Q 019061 185 TERSVM 190 (346)
Q Consensus 185 ~s~~~~ 190 (346)
+....+
T Consensus 91 q~~~~~ 96 (250)
T PRK14245 91 QRPNPF 96 (250)
T ss_pred cCCccC
Confidence 876544
No 307
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.80 E-value=1.2e-09 Score=110.73 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=42.7
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeCh
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTER 187 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~ 187 (346)
+...+|++++|+||||||||||+++|++..++..| .+...... .......+.+|+++..
T Consensus 273 l~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 273 FTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSG-YVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred EEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 45679999999999999999999999999988778 54432111 1111124588998874
No 308
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.80 E-value=6.4e-10 Score=112.56 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=44.5
Q ss_pred EeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-CccceeeecCCcc-----cccccCCeeEEeeCh
Q 019061 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRAP-----RAMEKDGVHYHFTER 187 (346)
Q Consensus 123 ~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~ 187 (346)
..+.++...+|++++|+||||||||||+++|++..+| ..| .+....+.. ......+.+|+++..
T Consensus 276 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (500)
T TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEG-NVFINGKPVDIRNPAQAIRAGIAMVPEDR 345 (500)
T ss_pred cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCe-EEEECCEECCCCCHHHHHhCCCEEcCcch
Confidence 3344456779999999999999999999999999874 677 554322111 111124578888874
No 309
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.80 E-value=1.1e-09 Score=110.98 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=42.7
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeCh
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER 187 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~ 187 (346)
+.+.+|++++|+||||||||||+++|++..++..| .+....+.. ......+.+|+++..
T Consensus 274 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 337 (501)
T PRK11288 274 FSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG-QVYLDGKPIDIRSPRDAIRAGIMLCPEDR 337 (501)
T ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCc-eEEECCEECCCCCHHHHHhCCCEEcCcCH
Confidence 45679999999999999999999999999988888 554322111 111124577888865
No 310
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.80 E-value=5.1e-08 Score=87.96 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=48.2
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~ 190 (346)
+..+.++...+|++++|+||||||||||+++|++..++..| .+....... ........+|+|+...++
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~ 90 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG-SILIDGVDISKIGLHDLRSRISIIPQDPVLF 90 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEhHhCCHHHHhhhEEEECCCCccc
Confidence 44445567789999999999999999999999999988888 443322111 111134578888876544
No 311
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.80 E-value=3.8e-08 Score=90.63 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=43.2
Q ss_pred EeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhH
Q 019061 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 123 ~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~ 189 (346)
+.+.++.+.+|++++|+||||||||||+++|++..++ .| .+..-.... ........+|+|+....
T Consensus 12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 80 (248)
T PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SG-SIQFAGQPLEAWSAAELARHRAYLSQQQTP 80 (248)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-Ce-EEEECCEecCcCCHHHHhhheEEecccCcc
Confidence 3445566789999999999999999999999998864 66 443211111 01111246788776543
No 312
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.80 E-value=1.6e-08 Score=106.72 Aligned_cols=136 Identities=17% Similarity=0.125 Sum_probs=84.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++++.+|+.++|+||||+||||+++.|.+.+++..| .|.....+.. ......++|++|...+|..
T Consensus 496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g----- 569 (711)
T TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG-QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG----- 569 (711)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-EEEECCEEHHhcCHHHHHhhceEEecCcccccc-----
Confidence 44455677889999999999999999999999999999888 5433222211 1122457888888766643
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
++.++..+...- .+.+.+.++++.... + ..+... .+.++..+..++..-+.+.+||
T Consensus 570 TIreNI~~g~~~--~~~e~i~~al~~a~l---~------~~i~~l-------------p~GldT~ige~G~~LSGGQkQR 625 (711)
T TIGR00958 570 SVRENIAYGLTD--TPDEEIMAAAKAANA---H------DFIMEF-------------PNGYDTEVGEKGSQLSGGQKQR 625 (711)
T ss_pred CHHHHHhcCCCC--CCHHHHHHHHHHcCC---H------HHHHhC-------------CCccCCcccCCCCcCCHHHHHH
Confidence 667776654221 223444443332110 0 000000 0123344555666678999999
Q ss_pred HHHHHHHHHh
Q 019061 278 LRNAKEEIKQ 287 (346)
Q Consensus 278 l~~~~~~i~~ 287 (346)
+..+++.+..
T Consensus 626 lalARALl~~ 635 (711)
T TIGR00958 626 IAIARALVRK 635 (711)
T ss_pred HHHHHHHhcC
Confidence 9999988764
No 313
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=7.9e-08 Score=88.56 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=49.5
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC--C---CccceeeecCCcc------cccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~g~~y~ 183 (346)
+.++...+..+.++.+.+|++++|+||||+|||||+++|.+..+ + ..| .+..-.... ......+.+|+
T Consensus 13 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~ 91 (252)
T PRK14255 13 LFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITG-NVSLRGQNIYAPNEDVVQLRKQVGMV 91 (252)
T ss_pred EEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCccc-EEEEcCEEcccccccHHHhcCeEEEE
Confidence 44554455666667788999999999999999999999999754 3 256 332211110 11112467888
Q ss_pred eeChhHH
Q 019061 184 FTERSVM 190 (346)
Q Consensus 184 f~s~~~~ 190 (346)
|+....+
T Consensus 92 ~q~~~~~ 98 (252)
T PRK14255 92 FQQPNPF 98 (252)
T ss_pred ECCCccC
Confidence 8876544
No 314
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.79 E-value=7.5e-10 Score=96.39 Aligned_cols=41 Identities=27% Similarity=0.376 Sum_probs=35.1
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+....++...+|++++|+||||+|||||+++|++..++..|
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 57 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 33444566779999999999999999999999999988877
No 315
>PRK13409 putative ATPase RIL; Provisional
Probab=98.78 E-value=9.7e-10 Score=113.14 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=41.4
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChh
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERS 188 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~ 188 (346)
.++.+.+|++++|+||||+|||||+++|++..++..| .+... ...+|.++...
T Consensus 358 ~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G-~I~~~---------~~i~y~~Q~~~ 410 (590)
T PRK13409 358 EGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG-EVDPE---------LKISYKPQYIK 410 (590)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEEe---------eeEEEeccccc
Confidence 3455679999999999999999999999999988888 44321 13677777643
No 316
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.78 E-value=5.4e-10 Score=97.88 Aligned_cols=46 Identities=28% Similarity=0.318 Sum_probs=38.0
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
++...++.+.++...+|++++|+||||+|||||+++|.+..++..|
T Consensus 9 ~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G 54 (180)
T cd03214 9 YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG 54 (180)
T ss_pred ECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3333455556667789999999999999999999999999988777
No 317
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.78 E-value=1.1e-08 Score=91.92 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=49.7
Q ss_pred EEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHHHHhh
Q 019061 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVICYCLM 318 (346)
Q Consensus 248 ~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~~l~ 318 (346)
.+++..++.+++.+|+..|+..+.+.+.+|++....+... ...++.++.|+ ++++..+++..++..+.
T Consensus 136 ~ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~~~---~~~ad~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 136 FIVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQEKL---IERADYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred eEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChHHH---HHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 3445566689999999999888899999999754322221 12367777765 99999999998887664
No 318
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=1.1e-07 Score=86.74 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=48.2
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~ 190 (346)
+..+.++.+.+|++++|+||||||||||+++|++..++..| .+...... .......+.+|+|+...++
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG-SILIDGQDIREVTLDSLRRAIGVVPQDTVLF 87 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEhhhCCHHHHHhhEEEECCCChhh
Confidence 44445566789999999999999999999999999988888 44321111 1111124578888876554
No 319
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.77 E-value=2.2e-09 Score=98.83 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=38.1
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccc--cCCCcc
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE--FPSMFG 162 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~--~~~~~g 162 (346)
+.++...++.+.++.+.+|++++|+|+||||||||+++|++. +++..|
T Consensus 15 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G 64 (252)
T CHL00131 15 ASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG 64 (252)
T ss_pred EEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCc
Confidence 334444455556677889999999999999999999999997 456677
No 320
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.77 E-value=2.9e-08 Score=86.92 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcccee
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i 165 (346)
+.+|...+... .+...+|++++|+||||||||||+++|.+..++..| .+
T Consensus 8 ~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i 56 (177)
T cd03222 8 KRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-ND 56 (177)
T ss_pred EEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCc-EE
Confidence 45555554443 356679999999999999999999999999988888 44
No 321
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.77 E-value=1.7e-09 Score=110.27 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=34.2
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.+..+.++...+|++++|+||||||||||+++|++.+++
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~ 61 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS 61 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 455556677889999999999999999999999999875
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.77 E-value=1.8e-09 Score=110.67 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=46.2
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeCh
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~ 187 (346)
++...++.+.++.+.+|++++|+||||||||||+++|.+..++..| .+.... . ..++|+++..
T Consensus 332 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G-~i~~~~-~------~~i~~v~q~~ 394 (552)
T TIGR03719 332 FGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKIGE-T------VKLAYVDQSR 394 (552)
T ss_pred ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe-EEEECC-c------eEEEEEeCCc
Confidence 3333444445566789999999999999999999999999988888 554311 1 1377888864
No 323
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.77 E-value=3.6e-08 Score=101.73 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=98.5
Q ss_pred EeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhccc
Q 019061 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGK 198 (346)
Q Consensus 123 ~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~~ 198 (346)
..+.++...+|+.++|+||||||||||++.|.+.+++..| .+.....+.. .......+|++++..+|. ++
T Consensus 351 l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-----~t 424 (585)
T TIGR01192 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG-QILIDGIDINTVTRESLRKSIATVFQDAGLFN-----RS 424 (585)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC-EEEECCEEhhhCCHHHHHhheEEEccCCccCc-----cc
Confidence 4445566779999999999999999999999999999888 5543222111 112345778888876553 36
Q ss_pred hhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHH-HHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 199 FLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS-VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 199 ~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~-l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
..++..+.... .+.+.+.++.+... +.. +... +..++..+..++...+.+.+||
T Consensus 425 i~~Ni~~~~~~--~~~~~~~~a~~~~~----------~~~~i~~l-------------~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 425 IRENIRLGREG--ATDEEVYEAAKAAA----------AHDFILKR-------------SNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred HHHHHhcCCCC--CCHHHHHHHHHHhC----------cHHHHHhc-------------cccccchhcCCCCCCCHHHHHH
Confidence 66666553211 12333333322100 000 0000 1123334445555668899999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+..+++.+... +.-++|+...+-|.+. .+.+.+.+..+. ++.+.+.+.|..+
T Consensus 480 l~lARall~~p-~ililDEpts~LD~~~-~~~i~~~l~~~~---~~~tvI~isH~~~ 531 (585)
T TIGR01192 480 LAIARAILKNA-PILVLDEATSALDVET-EARVKNAIDALR---KNRTTFIIAHRLS 531 (585)
T ss_pred HHHHHHHhcCC-CEEEEECCccCCCHHH-HHHHHHHHHHHh---CCCEEEEEEcChH
Confidence 99998877642 1112233333334433 345566665552 2445556666554
No 324
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.77 E-value=5e-10 Score=102.17 Aligned_cols=170 Identities=18% Similarity=0.134 Sum_probs=89.3
Q ss_pred ccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc---cccCCeeEEeeChhHHHHHHhccchhh
Q 019061 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA---MEKDGVHYHFTERSVMEKAIKDGKFLE 201 (346)
Q Consensus 125 ~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~---~~~~g~~y~f~s~~~~~~~~~~~~~~e 201 (346)
+.++++.+|.+++++||||+||||++++|.|.+.|..| .++...-.+.. ......++++-..... ...-...+
T Consensus 42 disf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql---~Wdlp~~d 117 (325)
T COG4586 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-KVRVNGKDPFRRREEYLRSIGLVMGQKLQL---WWDLPALD 117 (325)
T ss_pred eeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCC-eEEecCcCcchhHHHHHHHHHHHhhhhhee---eeechhhh
Confidence 34567889999999999999999999999999999888 44332211110 0011111111110000 00001222
Q ss_pred hhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHc------CCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHH
Q 019061 202 FASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRA------SPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (346)
Q Consensus 202 ~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~------~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~ 275 (346)
.......+|..+.+..++... ...-+||++..--.++++ .+.+....++.+|....|+|+..+.|-...+.++
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~-~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLD-FLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHH-HHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 233344445555444333321 123345554333233322 2222334556666666677777777655566666
Q ss_pred HHHHHHHHHHHhccCCCCceEEEcCCCHHHH
Q 019061 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEEC 306 (346)
Q Consensus 276 ~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~ 306 (346)
+-++.+.+..+ ++.+..+|+.+.+
T Consensus 197 ~Flke~n~~~~-------aTVllTTH~~~di 220 (325)
T COG4586 197 EFLKEYNEERQ-------ATVLLTTHIFDDI 220 (325)
T ss_pred HHHHHHHHhhC-------ceEEEEecchhhH
Confidence 66666554322 4666677766554
No 325
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=1.1e-09 Score=110.95 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=44.6
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-CCccceeeecCCc-----ccccccCCeeEEeeCh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-SMFGFSVSHTTRA-----PRAMEKDGVHYHFTER 187 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~ 187 (346)
+..+.++...+|++++|+||||||||||+++|++..+ +..| .+....+. .......+.+|+++..
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 347 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEG-EIFIDGKPVKIRNPQQAIAQGIAMVPEDR 347 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCc-EEEECCEECCCCCHHHHHHCCCEEeCcch
Confidence 3344456677999999999999999999999999987 4677 44321111 1111124578888874
No 326
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.77 E-value=2.4e-08 Score=102.71 Aligned_cols=178 Identities=18% Similarity=0.157 Sum_probs=98.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|+.++++|+||+|||||++.|++.+++..| .+.....+.. .......+|.+|....|..
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~----- 428 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG-RILLDGVDLRQLDPAELRARMALVPQDPVLFAA----- 428 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-EEEECCEEHHhcCHHHHHHhceEEccCCccccc-----
Confidence 34445567789999999999999999999999999999888 4433221111 1122457898888766543
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
++.++..+...- .+.+.+.++++.... .+.+... ...++..+...+..-+.+.+||
T Consensus 429 Ti~~Ni~~~~~~--~~~~~~~~~l~~~~l---------~~~i~~l-------------~~gl~t~i~~~g~~LSgGq~Qr 484 (576)
T TIGR02204 429 SVMENIRYGRPD--ATDEEVEAAARAAHA---------HEFISAL-------------PEGYDTYLGERGVTLSGGQRQR 484 (576)
T ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHcCc---------HHHHHhC-------------CCCCCceeCCCCCcCCHHHHHH
Confidence 566666543211 123334333322110 0000000 0112223344455567889999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+..++..+... +.-++|+...+-|.+. .+.+.+.+..+. +..+++.+.|.++
T Consensus 485 l~laRal~~~~-~ililDEpts~lD~~~-~~~i~~~l~~~~---~~~t~IiitH~~~ 536 (576)
T TIGR02204 485 IAIARAILKDA-PILLLDEATSALDAES-EQLVQQALETLM---KGRTTLIIAHRLA 536 (576)
T ss_pred HHHHHHHHhCC-CeEEEeCcccccCHHH-HHHHHHHHHHHh---CCCEEEEEecchH
Confidence 99998776542 1112333333334432 344555555542 2455546666553
No 327
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.76 E-value=5.4e-08 Score=90.60 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=36.7
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
.+..+.++.+.+|++++|+||||||||||+++|++.+++..|
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G 79 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG 79 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 344456677889999999999999999999999999988888
No 328
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1e-07 Score=87.95 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=49.5
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-----CccceeeecCCc------ccccccCCeeEE
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRA------PRAMEKDGVHYH 183 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-----~~g~~i~~ttr~------~~~~~~~g~~y~ 183 (346)
+.++...++.+.++.+.+|++++|+||||||||||+++|.+..++ ..| .+..-... .......+.+|+
T Consensus 14 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~ 92 (253)
T PRK14261 14 LWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITG-DILYNGENIMDSGADVVALRRKIGMV 92 (253)
T ss_pred EEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcce-EEEECCEEccccccchhhhhceEEEE
Confidence 344444566666677889999999999999999999999987542 246 33211111 111113457888
Q ss_pred eeChhHH
Q 019061 184 FTERSVM 190 (346)
Q Consensus 184 f~s~~~~ 190 (346)
|+...++
T Consensus 93 ~q~~~~~ 99 (253)
T PRK14261 93 FQRPNPF 99 (253)
T ss_pred ecCCccC
Confidence 8876554
No 329
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.76 E-value=1.6e-07 Score=84.55 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=47.7
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc--------ccccCCeeEEeeChhHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHFTERSVM 190 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~g~~y~f~s~~~~ 190 (346)
+..+.++.+.+|++++|+||||||||||+++|++..++..| .+........ .....+.+|+++....+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG-KVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 44445567789999999999999999999999999988888 4443221110 11124577888876544
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.76 E-value=2.2e-09 Score=110.04 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=48.1
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeCh
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~ 187 (346)
+.++...++.+.++.+.+|++++|+||||||||||+++|++..++..| .+.... . ..++|+++..
T Consensus 332 ~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G-~i~~~~-~------~~i~~v~q~~ 396 (556)
T PRK11819 332 KSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSG-TIKIGE-T------VKLAYVDQSR 396 (556)
T ss_pred EEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECC-c------eEEEEEeCch
Confidence 344444455555667789999999999999999999999999988888 554311 1 1377888864
No 331
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.76 E-value=1.3e-09 Score=97.20 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=48.3
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccc--cCCCccceeeecCCcc-----cccccCCeeEEeeChhH
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE--FPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~--~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~~ 189 (346)
++...+..+.++...+|++++|+|+||+|||||++.|++. .++..| .+.....+. ........+|+|+....
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (200)
T cd03217 10 VGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG-EILFKGEDITDLPPEERARLGIFLAFQYPPE 88 (200)
T ss_pred eCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCcc-EEEECCEECCcCCHHHHhhCcEEEeecChhh
Confidence 3333455556677889999999999999999999999998 466777 443211111 11112347788777544
Q ss_pred H
Q 019061 190 M 190 (346)
Q Consensus 190 ~ 190 (346)
+
T Consensus 89 ~ 89 (200)
T cd03217 89 I 89 (200)
T ss_pred c
Confidence 3
No 332
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.76 E-value=4.1e-08 Score=103.33 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=100.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|+.++++|+||||||||++.|.+.+++..| .|.....+.. ...+...+|++|...+|..
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G-~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~----- 545 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG-QVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR----- 545 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEehhhCCHHHHHHhCeEEccCCeehhh-----
Confidence 44445567789999999999999999999999999999888 5543222211 1123457888888766653
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++..+... ..+.+.+.++++.. ++...-... +..++..+...+..-+.+.+||
T Consensus 546 ti~eNi~~~~~--~~~~~~i~~a~~~~----------~l~~~i~~l------------p~gl~t~i~~~g~~LSgGq~qr 601 (694)
T TIGR01846 546 SIRDNIALCNP--GAPFEHVIHAAKLA----------GAHDFISEL------------PQGYNTEVGEKGANLSGGQRQR 601 (694)
T ss_pred hHHHHHhcCCC--CCCHHHHHHHHHHc----------ChHHHHHhC------------cCccCcEecCCCCCCCHHHHHH
Confidence 55666654321 12334444333221 111110000 0123334445556668899999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+..+++.+...+ .-++|+...+-|.+. .+.+.+.+..+. .+.+.+.+.|.++
T Consensus 602 i~lARall~~~~-ililDEpts~LD~~~-~~~i~~~l~~~~---~~~t~i~itH~~~ 653 (694)
T TIGR01846 602 IAIARALVGNPR-ILIFDEATSALDYES-EALIMRNMREIC---RGRTVIIIAHRLS 653 (694)
T ss_pred HHHHHHHHhCCC-EEEEECCCcCCCHHH-HHHHHHHHHHHh---CCCEEEEEeCChH
Confidence 999998876521 111233333334433 345555555552 3445546666554
No 333
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1.3e-07 Score=87.87 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
+.++...+..+.++.+.+|++++|+|+||||||||+++|.+...+
T Consensus 24 ~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 68 (265)
T PRK14252 24 FYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL 68 (265)
T ss_pred EEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 344444556666677889999999999999999999999998764
No 334
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.75 E-value=1.5e-09 Score=101.28 Aligned_cols=67 Identities=21% Similarity=0.182 Sum_probs=47.0
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccccc-ccCCeeEEeeCh
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAM-EKDGVHYHFTER 187 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~-~~~g~~y~f~s~ 187 (346)
..+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+..-....... .....+|+++..
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG-KISILGQPTRQALQKNLVAYVPQSE 87 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEhHHhhccceEEEecccc
Confidence 3455556677889999999999999999999999999988888 443211111111 112477887764
No 335
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.75 E-value=5.2e-10 Score=97.77 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=35.6
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+..+.++...+|++++|+||||||||||+++|.+..++..|
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 57 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG 57 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 34445567789999999999999999999999999988777
No 336
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.75 E-value=1.1e-07 Score=82.29 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=44.7
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~ 187 (346)
.+..+.++...+|++++|+||||||||||+++|.+.+++..| .+....+ ...+|+++..
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~-------~~i~~~~q~~ 73 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG-RIGMPEG-------EDLLFLPQRP 73 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCC-------ceEEEECCCC
Confidence 344555677789999999999999999999999999988888 4433211 3466776654
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.74 E-value=1.2e-09 Score=112.04 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=50.6
Q ss_pred HHHcC-CeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHH
Q 019061 114 KKVVG-AEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 114 ~~~~g-~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~ 190 (346)
.+.|+ ...++.+.++.+.+|++++|+||||||||||+++|++..++..| .+.... ...++|+++....+
T Consensus 11 s~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G-~i~~~~-------~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 11 SKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG-EARPAP-------GIKVGYLPQEPQLD 80 (552)
T ss_pred EEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecC-------CCEEEEEeccCCCC
Confidence 34454 44566666778889999999999999999999999999988888 443211 12367887765443
No 338
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.74 E-value=4.3e-08 Score=100.86 Aligned_cols=177 Identities=12% Similarity=0.073 Sum_probs=95.9
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|+.++|+||||||||||++.|.+.++|..| .+.....+.. .......+|+++...+|..
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~----- 403 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG-DIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD----- 403 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEHhhCCHHHHHhheEEEccCCeeccc-----
Confidence 34445566789999999999999999999999999999888 4433221111 1122457788887665532
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++..+...- .+.+.+..+.+.... + ..+... .+.++..+..++..-+.+.+||
T Consensus 404 ti~~Ni~~~~~~--~~~~~~~~~~~~~~l---~------~~i~~l-------------p~gl~t~~~~~g~~LSgGq~qR 459 (569)
T PRK10789 404 TVANNIALGRPD--ATQQEIEHVARLASV---H------DDILRL-------------PQGYDTEVGERGVMLSGGQKQR 459 (569)
T ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHcCC---H------HHHHhC-------------cCcccceecCCCCcCCHHHHHH
Confidence 555655443211 123333333221100 0 000000 0123334445555567899999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYP 333 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~ 333 (346)
+..+++.+... +.-++|+....-|.+. .+.+.+.+..+. ++.+.+.+.|..
T Consensus 460 i~lARall~~~-~illlDEpts~LD~~~-~~~i~~~l~~~~---~~~tii~itH~~ 510 (569)
T PRK10789 460 ISIARALLLNA-EILILDDALSAVDGRT-EHQILHNLRQWG---EGRTVIISAHRL 510 (569)
T ss_pred HHHHHHHhcCC-CEEEEECccccCCHHH-HHHHHHHHHHHh---CCCEEEEEecch
Confidence 99998776642 1112233333334433 344555555542 234444556644
No 339
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.74 E-value=9.6e-10 Score=99.08 Aligned_cols=50 Identities=28% Similarity=0.308 Sum_probs=42.0
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+.-.++.+.++.+.+.....|+-++|+||||||||||++.+.+.+++..|
T Consensus 37 v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg 86 (257)
T COG1119 37 VSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86 (257)
T ss_pred eEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 33445667777777777889999999999999999999999999998766
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=98.74 E-value=4.6e-08 Score=100.80 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=53.0
Q ss_pred hccccCCCCeeEEEeCCC--------h-HHHH-HHHHHcCCe-EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 89 VIKKGSSSDDCLWFLEVD--------T-PYVR-EQKKVVGAE-VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 89 ~~~~~~~~~~~i~~~k~D--------~-~~~~-~~~~~~g~~-v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++.|..=+-.-||+.||- . +++. ++.+.||.. .++.+.+ ...+|++++|+||||+|||||+++|.+.+
T Consensus 45 ~~~e~~c~~c~~c~~~cp~~a~~i~~~p~~~~~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l 123 (590)
T PRK13409 45 VISEELCIGCGICVKKCPFDAISIVNLPEELEEEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL 123 (590)
T ss_pred eeeHhhccccccccccCCcceEEEeeCchhhccCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344444455568888873 1 3343 356777753 3444444 67799999999999999999999999999
Q ss_pred CCCcc
Q 019061 158 PSMFG 162 (346)
Q Consensus 158 ~~~~g 162 (346)
+|..|
T Consensus 124 ~p~~G 128 (590)
T PRK13409 124 IPNLG 128 (590)
T ss_pred cCCCc
Confidence 98888
No 341
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=1.6e-09 Score=110.42 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=47.9
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeCh
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~ 187 (346)
+.|+...+..+.++.+.+|++++|+||||||||||+++|++..++..| .+..-.+ ...+|+++..
T Consensus 327 ~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G-~i~~~~~-------~~i~~~~q~~ 391 (530)
T PRK15064 327 KGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKWSEN-------ANIGYYAQDH 391 (530)
T ss_pred EeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCc-------eEEEEEcccc
Confidence 444444455555677789999999999999999999999999988888 4432111 2367887764
No 342
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.73 E-value=3e-08 Score=84.15 Aligned_cols=166 Identities=19% Similarity=0.153 Sum_probs=90.1
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccce-ee----ecCCcc----cccccCCeeEEe
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFS-VS----HTTRAP----RAMEKDGVHYHF 184 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~-i~----~ttr~~----~~~~~~g~~y~f 184 (346)
...||..-...+..++...|.+++|+||||+|||||++.|.=..-+..|.- |. ..++.+ ...-+..++.+|
T Consensus 9 n~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvf 88 (242)
T COG4161 9 NCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88 (242)
T ss_pred ccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhh
Confidence 344554444444555667899999999999999999999866655566621 11 011111 111123456667
Q ss_pred eChhHHHHHHhccchhhhhhh-hccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHH
Q 019061 185 TERSVMEKAIKDGKFLEFASV-HGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (346)
Q Consensus 185 ~s~~~~~~~~~~~~~~e~~~~-~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL 263 (346)
+...+.+.+ +++|+.-- .-...|.+.+++.... .++-+||
T Consensus 89 qqy~lwphl----tv~enlieap~kv~gl~~~qa~~~a-----------------------------------~ellkrl 129 (242)
T COG4161 89 QQYNLWPHL----TVQENLIEAPCRVLGLSKDQALARA-----------------------------------EKLLKRL 129 (242)
T ss_pred hhhccCchh----HHHHHHHhhhHHHhCCCHHHHHHHH-----------------------------------HHHHHHh
Confidence 776666665 44554321 1122444444332211 1111221
Q ss_pred H--cCC----CCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcc
Q 019061 264 R--ARG----TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQI 320 (346)
Q Consensus 264 ~--~R~----~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~ 320 (346)
+ ... -..+.+.++|+.++++.+... .--+||.--+..|++- ..++..+|+.+...
T Consensus 130 rl~~~adr~plhlsggqqqrvaiaralmmkp-qvllfdeptaaldpei-taqvv~iikel~~t 190 (242)
T COG4161 130 RLKPYADRYPLHLSGGQQQRVAIARALMMEP-QVLLFDEPTAALDPEI-TAQIVSIIKELAET 190 (242)
T ss_pred ccccccccCceecccchhhhHHHHHHHhcCC-cEEeecCcccccCHHH-HHHHHHHHHHHHhc
Confidence 1 111 123578889999998776541 1123455555556644 45677788877643
No 343
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=5.9e-08 Score=84.23 Aligned_cols=41 Identities=32% Similarity=0.489 Sum_probs=35.4
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+..+.++...+|++++|+||||+|||||+++|.+..++..|
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G 57 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG 57 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 34444566779999999999999999999999999988777
No 344
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.71 E-value=6.2e-08 Score=95.26 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=96.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCC----cccccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR----APRAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr----~~~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|..++++||||||||||.+.|++..++..| .++.-.- -.++.--..++|.+|+-++|+.
T Consensus 351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G-~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G----- 424 (580)
T COG4618 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG-SVRLDGADLRQWDREQLGRHIGYLPQDVELFDG----- 424 (580)
T ss_pred ceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCC-cEEecchhhhcCCHHHhccccCcCcccceecCC-----
Confidence 34445566779999999999999999999999999998888 6653211 1111111357899999888764
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..|+....+.- .+.+.+-++... .++..+--.. .+..+.++...|...+.+.+||
T Consensus 425 TIaeNIaRf~~~--~d~~kIieAA~l----------AgvHelIl~l------------P~GYdT~iG~~G~~LSgGQRQR 480 (580)
T COG4618 425 TIAENIARFGEE--ADPEKVIEAARL----------AGVHELILRL------------PQGYDTRIGEGGATLSGGQRQR 480 (580)
T ss_pred cHHHHHHhcccc--CCHHHHHHHHHH----------cChHHHHHhC------------cCCccCccCCCCCCCCchHHHH
Confidence 455554332211 112222222111 0111110000 1123344555555668999999
Q ss_pred HHHHHHHHHhccCCCCceEEEc--CCCHHHHHH-HHHHHHHHhhcccCceeeEeecc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILY--NDKLEECYE-NLKVICYCLMQISDNLIIFLFVT 331 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~--n~~le~~~~-~l~~iI~~l~~~~~~~~~~~~~~ 331 (346)
+.-+++.+..- +-.|.. |-|+|+.=+ .+.+.|..+.. .+.+.+++.|
T Consensus 481 IaLARAlYG~P-----~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~--rG~~vvviaH 530 (580)
T COG4618 481 IALARALYGDP-----FLVVLDEPNSNLDSEGEAALAAAILAAKA--RGGTVVVIAH 530 (580)
T ss_pred HHHHHHHcCCC-----cEEEecCCCCCcchhHHHHHHHHHHHHHH--cCCEEEEEec
Confidence 99988664431 222222 225554433 45556655543 2444445555
No 345
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.71 E-value=3.8e-07 Score=80.99 Aligned_cols=173 Identities=19% Similarity=0.184 Sum_probs=87.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHh--ccchhhhh---hhh
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK--DGKFLEFA---SVH 206 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~--~~~~~e~~---~~~ 206 (346)
+|++++|.|++||||||+++.|...+.. .|.. .++++.+.... ..+.+...+. ...+..+. .+.
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~-~~~~-~~~~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQ-QGRD-VVFTREPGGTP---------LGEKLRELLLDPNEEMDDKTELLLFY 70 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH-cCCc-eeEeeCCCCCh---------HHHHHHHHHhccccCCCHHHHHHHHH
Confidence 5789999999999999999999886532 2312 22232222100 0112222111 01111111 111
Q ss_pred ccccCCcHHHHHHHHHhCCceEEEe---------------cHHHHHHHHc----CCCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 207 GNLYGTSVEAVEAVADAGKRCILDI---------------DVQGARSVRA----SPLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 207 ~~~yg~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l~~----~~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
...+......+...+..+..+++|= +......+.. ......++++..| .+.+.+|+..|+
T Consensus 71 ~~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~-~~~~~~Rl~~R~ 149 (205)
T PRK00698 71 AARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVP-PEVGLARIRARG 149 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhcC
Confidence 2223333333444456677888871 1111222221 1112345555554 588999999987
Q ss_pred CCC-----HHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 268 TET-----EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 268 ~~~-----~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
... .....+++......+.... ...+..|..+.+++++.+++.+++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~Id~~~~~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 150 ELDRIEQEGLDFFERVREGYLELAEKE-PERIVVIDASQSLEEVHEDILAVIKAW 203 (205)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 322 1134455554333333211 122334555568999999888888654
No 346
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.71 E-value=4.9e-08 Score=109.76 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=33.9
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
++.+.++.+.+|+.++|+|||||||||+++.|.+.+.|
T Consensus 1183 vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred cccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45556677889999999999999999999999999987
No 347
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=1.5e-07 Score=89.32 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=48.3
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCcc------cccccCCeeEEee
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFT 185 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~g~~y~f~ 185 (346)
++...++...++.+.+|++++|+||||||||||+++|++.++ +..| .+..-.... ........+|+|+
T Consensus 55 ~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G-~I~i~g~~i~~~~~~~~~~~~~i~~v~q 133 (305)
T PRK14264 55 YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDG-SVELDGQDIYQDGVNLVELRKRVGMVFQ 133 (305)
T ss_pred eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEcccccccHHHHhhceEEEcc
Confidence 443445555567778999999999999999999999999875 3566 443211110 1111245788888
Q ss_pred ChhHH
Q 019061 186 ERSVM 190 (346)
Q Consensus 186 s~~~~ 190 (346)
...++
T Consensus 134 ~~~l~ 138 (305)
T PRK14264 134 SPNPF 138 (305)
T ss_pred CCccc
Confidence 76544
No 348
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.70 E-value=6.7e-08 Score=97.64 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+.|+...+..+.+++..+|++++|+||||||||||+++|.+..++..|
T Consensus 11 ~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G 58 (490)
T PRK10938 11 FRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSG 58 (490)
T ss_pred EEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCc
Confidence 345444455556677889999999999999999999999999988888
No 349
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.70 E-value=7e-09 Score=95.25 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=49.8
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc--CCCccceeeecCCcc-----cccccCCeeEEeeChh
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS 188 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~--~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~ 188 (346)
.++...+..+.++.+.+|++++|+||||||||||+++|++.. ++..| .+....... ......+.+|+++...
T Consensus 10 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 88 (248)
T PRK09580 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-TVEFKGKDLLELSPEDRAGEGIFMAFQYPV 88 (248)
T ss_pred EeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCce-EEEECCCccccCCHHHHhhcceEEEecCch
Confidence 344344555566778899999999999999999999999984 56777 443221111 1111245778877755
Q ss_pred HHH
Q 019061 189 VME 191 (346)
Q Consensus 189 ~~~ 191 (346)
.+.
T Consensus 89 ~~~ 91 (248)
T PRK09580 89 EIP 91 (248)
T ss_pred hcc
Confidence 443
No 350
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=8.2e-08 Score=103.28 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=84.6
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc---ccc-cCCeeEEeeChhHHHHHHhccchhh
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AME-KDGVHYHFTERSVMEKAIKDGKFLE 201 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~-~~g~~y~f~s~~~~~~~~~~~~~~e 201 (346)
.++.+.+|++++|+|||||||||++.+|...+.|..| .+.--....+ ... +...+.+-|.+-+|.. +..|
T Consensus 1009 l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G-~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-----TIrE 1082 (1228)
T KOG0055|consen 1009 LSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG-KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-----TIRE 1082 (1228)
T ss_pred CcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC-eEEECCcccccCCHHHHHHhcceeccCchhhcc-----cHHH
Confidence 3355779999999999999999999999999999888 4432222221 111 2345566666666653 5667
Q ss_pred hhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 019061 202 FASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (346)
Q Consensus 202 ~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~ 281 (346)
+..|.... .+.+.+.++++.... .. |+.. -++..+.++..||...+.+.+||++++
T Consensus 1083 NI~YG~~~--vs~~eIi~Aak~ANa---------H~------------FI~s-LP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1083 NIAYGSEE--VSEEEIIEAAKLANA---------HN------------FISS-LPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred HHhccCCC--CCHHHHHHHHHHhhh---------HH------------HHhc-CcCcccCccCcccCcCCchHHHHHHHH
Confidence 76655111 344445444332110 00 0000 024667788888888899999999999
Q ss_pred HHHHHh
Q 019061 282 KEEIKQ 287 (346)
Q Consensus 282 ~~~i~~ 287 (346)
++.+..
T Consensus 1139 RAilRn 1144 (1228)
T KOG0055|consen 1139 RAILRN 1144 (1228)
T ss_pred HHHHcC
Confidence 988765
No 351
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.69 E-value=8.4e-08 Score=100.17 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=50.5
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cc---cccCCeeEEeeChhHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RA---MEKDGVHYHFTERSVME 191 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~---~~~~g~~y~f~s~~~~~ 191 (346)
.+..+.+++..+|++++|+||||+|||||+++|++.+++..| .+.....+. .. ......+|.|+...+++
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~ 99 (648)
T PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG-TYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLS 99 (648)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCC
Confidence 455556677889999999999999999999999999998888 443221111 11 11346889988876554
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.69 E-value=4.2e-09 Score=109.67 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=48.8
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeCh
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~ 187 (346)
+.+.|+...++.+.++.+.+|.+++|+||||||||||+++|++..++..| .+... .. -.++|+++..
T Consensus 325 l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G-~i~~~-~~------~~i~y~~q~~ 391 (635)
T PRK11147 325 VNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG-RIHCG-TK------LEVAYFDQHR 391 (635)
T ss_pred eEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEEC-CC------cEEEEEeCcc
Confidence 33445545555556677789999999999999999999999999988888 44321 11 1367877653
No 353
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.69 E-value=9.2e-08 Score=97.88 Aligned_cols=179 Identities=17% Similarity=0.173 Sum_probs=96.2
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|+.++++||||||||||++.|.+.+++..| .+.....+ .........+|+++....|..
T Consensus 333 ~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~----- 406 (544)
T TIGR01842 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-SVRLDGADLKQWDRETFGKHIGYLPQDVELFPG----- 406 (544)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEehhhCCHHHHhhheEEecCCcccccc-----
Confidence 34445567789999999999999999999999999999888 44321111 111123457888887665542
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++..+... ..+.+.+.++.+.. ++...-... .+.++..+..++..-+.+.+||
T Consensus 407 ti~~Ni~~~~~--~~~~~~~~~~~~~~----------~~~~~i~~l------------~~gl~t~~~~~g~~LSgGq~qr 462 (544)
T TIGR01842 407 TVAENIARFGE--NADPEKIIEAAKLA----------GVHELILRL------------PDGYDTVIGPGGATLSGGQRQR 462 (544)
T ss_pred cHHHHHhccCC--CCCHHHHHHHHHHh----------ChHHHHHhC------------ccccccccCCCcCCCCHHHHHH
Confidence 45555543221 12223333322210 111110000 0122333444566678899999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+..+++.+...+ .-++|+....-|.+ ..+.+.+.+..+.. .+.+.+.+.|..+
T Consensus 463 l~lARall~~~~-ililDEpts~LD~~-~~~~i~~~l~~~~~--~~~tvi~ith~~~ 515 (544)
T TIGR01842 463 IALARALYGDPK-LVVLDEPNSNLDEE-GEQALANAIKALKA--RGITVVVITHRPS 515 (544)
T ss_pred HHHHHHHhcCCC-EEEEeCCccccCHH-HHHHHHHHHHHHhh--CCCEEEEEeCCHH
Confidence 999997765421 11122222222443 23455555555421 2344445666543
No 354
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.69 E-value=1.3e-07 Score=86.89 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=37.4
Q ss_pred EeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 123 ~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
..+.++.+.+|++++|+|.|||||||+.++|+++.+|+.| .|.
T Consensus 29 vd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~ 71 (268)
T COG4608 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG-EIL 71 (268)
T ss_pred ecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEE
Confidence 3445678889999999999999999999999999999888 443
No 355
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.69 E-value=4.7e-09 Score=106.02 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=85.2
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeChh---HHHHH-Hhccc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERS---VMEKA-IKDGK 198 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~~---~~~~~-~~~~~ 198 (346)
+...+|++++|+||||||||||+++|++..++..| .+..-... .......+.+|+++... .|... .....
T Consensus 269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 347 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAG-TITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNS 347 (491)
T ss_pred EEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCcc-EEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhe
Confidence 44669999999999999999999999999988888 44321111 11111245677776542 22211 00001
Q ss_pred hhhhhhhhccccCC-cH----HHHHHHHHhCCc--eEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCH
Q 019061 199 FLEFASVHGNLYGT-SV----EAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (346)
Q Consensus 199 ~~e~~~~~~~~yg~-~~----~~i~~~~~~~~~--~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~ 271 (346)
..++.......++. .. +.+.+.++.-.. -.++-.+..+..-++++.....+++..|++..+||+..+.|..+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~ 427 (491)
T PRK10982 348 LISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAK 427 (491)
T ss_pred ehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHH
Confidence 11111111111121 11 112222221100 011222222222223333334455566666667777777776666
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHH
Q 019061 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECY 307 (346)
Q Consensus 272 e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~ 307 (346)
+.+.+.+..+..+ + ...++.+|+.+.+.
T Consensus 428 ~~~~~~l~~l~~~-------~-~tvi~vsHd~~~~~ 455 (491)
T PRK10982 428 FEIYQLIAELAKK-------D-KGIIIISSEMPELL 455 (491)
T ss_pred HHHHHHHHHHHHC-------C-CEEEEECCChHHHH
Confidence 6666666543211 1 25677777776643
No 356
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.69 E-value=1e-07 Score=95.84 Aligned_cols=43 Identities=23% Similarity=0.137 Sum_probs=37.1
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcccee
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i 165 (346)
++.+.++.+.+|++++|+||||||||||+++|++..++..| .+
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG-eI 81 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-TV 81 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce-EE
Confidence 44555677789999999999999999999999999988888 44
No 357
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.68 E-value=7.8e-08 Score=96.32 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=99.7
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC----ccceeeecCC--------cccccccCCeeEEeeCh-
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM----FGFSVSHTTR--------APRAMEKDGVHYHFTER- 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~----~g~~i~~ttr--------~~~~~~~~g~~y~f~s~- 187 (346)
.+..+.+++..+|++++|+|.|||||||+++.|.+.++.. .| .|....+ ..+...-..++|+||+.
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G-~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSG-EVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccce-EEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 3445566888999999999999999999999999998865 35 4422111 11122224578999974
Q ss_pred hHHHH-HHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 188 SVMEK-AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 188 ~~~~~-~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
..+.. +.......|-...+. +...+.+.+.. .+-++.... ++ .+. + ...
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~---~~~~~ea~~~a--------------~elL~~Vgl--------~~-~~~---~-~~y 151 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHG---KGSRAEARKRA--------------VELLEQVGL--------PD-PER---R-DRY 151 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhc---cccHHHHHHHH--------------HHHHHHcCC--------CC-hhh---h-ccC
Confidence 22221 111112222222211 11122111111 111111100 00 000 1 123
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC---CHHHH-HHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND---KLEEC-YENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~---~le~~-~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
..+.+.+++||+..+.+.... ++.+++++ .+|.+ ..++.+++..++...+..++ ++.|++.-++.+|
T Consensus 152 PheLSGG~rQRv~iAmALa~~------P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l-~ITHDl~Vva~~a 222 (539)
T COG1123 152 PHQLSGGMRQRVMIAMALALK------PKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVL-FITHDLGVVAELA 222 (539)
T ss_pred CcccCchHHHHHHHHHHHhCC------CCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEE-EEcCCHHHHHHhc
Confidence 345689999999998766443 35667665 44443 34788888888765444444 7788777666665
No 358
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.68 E-value=2.5e-07 Score=78.19 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=35.7
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+....++...+|++++|+||||+|||||+++|.+..++..|
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 55 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG 55 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce
Confidence 44445567789999999999999999999999999988877
No 359
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=2.5e-07 Score=85.15 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=48.5
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC-----CCccceeeecCCcc------cccccCCeeEEee
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFT 185 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~g~~y~f~ 185 (346)
++...+..+.++.+.+|++++|+||||+|||||+++|++... +..| .+..-.... ......+.+|+|+
T Consensus 13 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~i~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14266 13 FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG-HIYLDGVDIYDPAVDVVELRKKVGMVFQ 91 (250)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCcc-EEEECCEEcccccccHHHHhhheEEEec
Confidence 444445555667788999999999999999999999998753 2456 333211110 1112346888888
Q ss_pred ChhHHH
Q 019061 186 ERSVME 191 (346)
Q Consensus 186 s~~~~~ 191 (346)
....|.
T Consensus 92 ~~~~~~ 97 (250)
T PRK14266 92 KPNPFP 97 (250)
T ss_pred CCccCc
Confidence 765543
No 360
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.67 E-value=2.5e-09 Score=107.99 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=48.2
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC-CccceeeecCCc-----ccccccCCeeEEeeCh
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRA-----PRAMEKDGVHYHFTER 187 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~-~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~ 187 (346)
.+.|+...+..+.++...+|++++|+||||||||||+++|++..++ ..| .+..-.+. .........+|+++..
T Consensus 267 ~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (490)
T PRK10938 267 VVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN-DLTLFGRRRGSGETIWDIKKHIGYVSSSL 345 (490)
T ss_pred EEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCC-eEEEecccCCCCCCHHHHHhhceEECHHH
Confidence 3445444455556677789999999999999999999999997764 456 44321111 1011123577887754
Q ss_pred h
Q 019061 188 S 188 (346)
Q Consensus 188 ~ 188 (346)
.
T Consensus 346 ~ 346 (490)
T PRK10938 346 H 346 (490)
T ss_pred H
Confidence 3
No 361
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.67 E-value=3.7e-09 Score=107.30 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=41.8
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccccccCCeeEEeeCh
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTER 187 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~g~~y~f~s~ 187 (346)
+...+|++++|+||||||||||+++|++..++..| .+...... .......+.+|+++..
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK15439 284 LEVRAGEILGLAGVVGAGRTELAETLYGLRPARGG-RIMLNGKEINALSTAQRLARGLVYLPEDR 347 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-EEEECCEECCCCCHHHHHhCCcEECCCCh
Confidence 34568999999999999999999999999988888 45322111 1111123577887763
No 362
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.67 E-value=1.1e-07 Score=79.84 Aligned_cols=72 Identities=24% Similarity=0.215 Sum_probs=50.8
Q ss_pred CccccchhhccccCCCCeeEEEeCCCh---HHHH---HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhc
Q 019061 81 LLNEDRILVIKKGSSSDDCLWFLEVDT---PYVR---EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLM 154 (346)
Q Consensus 81 ~l~~dr~l~~~~~~~~~~~i~~~k~D~---~~~~---~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~ 154 (346)
.+ .+++.... .+.+.++++||+|. +... ...+..+++++..|+... ...++++|+||+||||++|.|.
T Consensus 31 ~l--~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~---~~~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 31 DL--ERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE---NATIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred HH--HHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC---CcEEEEECCCCCCHHHHHHHHh
Confidence 55 56665432 57899999999993 2222 222456788888876521 1289999999999999999998
Q ss_pred cccC
Q 019061 155 KEFP 158 (346)
Q Consensus 155 ~~~~ 158 (346)
+...
T Consensus 105 ~~~~ 108 (141)
T cd01857 105 GKKK 108 (141)
T ss_pred CCCc
Confidence 7643
No 363
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.66 E-value=2.1e-07 Score=87.07 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=47.7
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~~ 191 (346)
++.+.++.+.+|++++|+|+||+|||||+++|.+.++ ..| .+..-... .........+|+|+...+|.
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G-~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~ 90 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG-DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS 90 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCc-EEEECCEEhhhCCHHHHhhhEEEECCCcccch
Confidence 4444556788999999999999999999999999987 567 44321111 11112346789988876664
No 364
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.8e-07 Score=80.35 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=47.5
Q ss_pred HHHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeee
Q 019061 110 VREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH 167 (346)
Q Consensus 110 ~~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ 167 (346)
+.++.|.||...-....++...+|++++++|.||||||||+++|.+.+.|..| .+.+
T Consensus 9 V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G-~v~Y 65 (258)
T COG4107 9 VSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG-TVTY 65 (258)
T ss_pred ehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCC-eEEE
Confidence 34667888877666666678889999999999999999999999999999888 4433
No 365
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=6.6e-09 Score=105.95 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=40.5
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+.++...++.+.++.+.+|++++|+||||||||||+++|++..++..|
T Consensus 9 ~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G 56 (530)
T PRK15064 9 MQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAG 56 (530)
T ss_pred EEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 345545566666778889999999999999999999999999988878
No 366
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.64 E-value=2.9e-09 Score=98.56 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=32.2
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhccccCCCccc
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~ 163 (346)
...+|++++|+||||||||||+++|++.+++..|.
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~ 56 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGK 56 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence 35689999999999999999999999999998883
No 367
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.64 E-value=3e-09 Score=89.20 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=50.0
Q ss_pred CCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccc--eee-ecCCc-ccccccCCeeEEeeChhHHHHH
Q 019061 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF--SVS-HTTRA-PRAMEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 118 g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~--~i~-~ttr~-~~~~~~~g~~y~f~s~~~~~~~ 193 (346)
+...+....++++-+|+++-|+||||||||||+..+.+.+.+.+.. .+. ..++. .-......++..|++.-+|+.+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 3444555455667899999999999999999999999988765431 221 11111 1112234577889987777664
No 368
>PLN03130 ABC transporter C family member; Provisional
Probab=98.64 E-value=1.1e-07 Score=107.89 Aligned_cols=174 Identities=10% Similarity=0.037 Sum_probs=103.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|+.++|+|+||||||||++.|.+.+++..| .|..-..+ .....+...+|++|++.+|. |
T Consensus 1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G-~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~-----G 1327 (1622)
T PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG-RILIDGCDISKFGLMDLRKVLGIIPQAPVLFS-----G 1327 (1622)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc-eEEECCEecccCCHHHHHhccEEECCCCcccc-----c
Confidence 45556677889999999999999999999999999999888 44321111 11122345889999887764 3
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++..+... .+.+.+.++++.... ...+... ...++..+..+|..-+.+.+||
T Consensus 1328 TIreNLd~~~~---~tdeei~~Al~~a~l---------~~~I~~l-------------p~GLdt~Vge~G~nLSgGQrQr 1382 (1622)
T PLN03130 1328 TVRFNLDPFNE---HNDADLWESLERAHL---------KDVIRRN-------------SLGLDAEVSEAGENFSVGQRQL 1382 (1622)
T ss_pred cHHHHhCcCCC---CCHHHHHHHHHHcCc---------HHHHHhC-------------ccccCccccCCCCCCCHHHHHH
Confidence 66777654331 234445444433111 0001110 1245556677777778999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVT 331 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~ 331 (346)
+..+++.+...+ .-++|+--.+-|. ++.+.+.+.|+... .+++.+++.|
T Consensus 1383 laLARALLr~p~-ILILDEATSaLD~-~Te~~Iq~~I~~~~---~~~TvI~IAH 1431 (1622)
T PLN03130 1383 LSLARALLRRSK-ILVLDEATAAVDV-RTDALIQKTIREEF---KSCTMLIIAH 1431 (1622)
T ss_pred HHHHHHHHcCCC-EEEEECCCCCCCH-HHHHHHHHHHHHHC---CCCEEEEEeC
Confidence 999998876521 1112222222233 22345666666553 2344446565
No 369
>PLN03232 ABC transporter C family member; Provisional
Probab=98.64 E-value=7.2e-08 Score=109.03 Aligned_cols=176 Identities=9% Similarity=0.032 Sum_probs=103.5
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKD 196 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~ 196 (346)
.+..+.++.+.+|+.++|+|+||||||||++.|.+.+++..| .|..-..+. ....+...+|++|++.+|.
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G-~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~----- 1323 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG-RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS----- 1323 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-eEEECCEEhhhCCHHHHHhhcEEECCCCeeeC-----
Confidence 345556677889999999999999999999999999999888 443222111 1122345788888876664
Q ss_pred cchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHH
Q 019061 197 GKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (346)
Q Consensus 197 ~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~ 276 (346)
++..++..+... .+.+++.++++.... ...+... ...++..+..+|..-+.+.+|
T Consensus 1324 gTIr~NL~~~~~---~sdeei~~al~~a~l---------~~~I~~l-------------p~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1324 GTVRFNIDPFSE---HNDADLWEALERAHI---------KDVIDRN-------------PFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred ccHHHHcCCCCC---CCHHHHHHHHHHcCC---------HHHHHhC-------------cCCCCceecCCCCCCCHHHHH
Confidence 366777654321 234444444432111 0001100 123455566677777899999
Q ss_pred HHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccc
Q 019061 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTY 332 (346)
Q Consensus 277 Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~ 332 (346)
|+..+++.+...+ .-++|+--++-|. ++.+.+.+.+.... +.++.+++.|-
T Consensus 1379 rlaLARALLr~~~-ILILDEATSaLD~-~Te~~Iq~~L~~~~---~~~TvI~IAHR 1429 (1495)
T PLN03232 1379 LLSLARALLRRSK-ILVLDEATASVDV-RTDSLIQRTIREEF---KSCTMLVIAHR 1429 (1495)
T ss_pred HHHHHHHHHhCCC-EEEEECCcccCCH-HHHHHHHHHHHHHc---CCCEEEEEeCC
Confidence 9999998876521 1112222222243 23455666666553 23444466653
No 370
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=7e-08 Score=103.81 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=81.6
Q ss_pred ccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc---cc-ccCCeeEEeeChhHHHHHHhccchh
Q 019061 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AM-EKDGVHYHFTERSVMEKAIKDGKFL 200 (346)
Q Consensus 125 ~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~---~~-~~~g~~y~f~s~~~~~~~~~~~~~~ 200 (346)
..++...+|++++|+|||||||||+++.|.+.+.|..| .|.--..+.+ .. .+..++.++|.+-+|.. +..
T Consensus 371 g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G-~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-----tI~ 444 (1228)
T KOG0055|consen 371 GVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG-EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-----TIR 444 (1228)
T ss_pred CeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc-eEEEcCccchhcchHHHHhhcCeeeechhhhcc-----cHH
Confidence 34456779999999999999999999999999999988 5432222211 11 12356777887755542 445
Q ss_pred hhhhhhccccCCc---HHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 201 EFASVHGNLYGTS---VEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 201 e~~~~~~~~yg~~---~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
|+.. ||.+ .+.+.++.+... ....+... ++.++.....+|...+++.+||
T Consensus 445 eNI~-----~G~~dat~~~i~~a~k~an---------a~~fi~~l-------------p~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 445 ENIR-----YGKPDATREEIEEAAKAAN---------AHDFILKL-------------PDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred HHHh-----cCCCcccHHHHHHHHHHcc---------HHHHHHhh-------------HHhhcccccCCCCCCChHHHHH
Confidence 5543 4443 333443332211 11111110 2455556667777778999999
Q ss_pred HHHHHHHHHh
Q 019061 278 LRNAKEEIKQ 287 (346)
Q Consensus 278 l~~~~~~i~~ 287 (346)
++.+++.+..
T Consensus 498 IAIARalv~~ 507 (1228)
T KOG0055|consen 498 IAIARALVRN 507 (1228)
T ss_pred HHHHHHHHhC
Confidence 9999988765
No 371
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.64 E-value=1.1e-06 Score=77.18 Aligned_cols=170 Identities=19% Similarity=0.206 Sum_probs=80.8
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhcc------chhhhhhhhc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDG------KFLEFASVHG 207 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~------~~~e~~~~~~ 207 (346)
.+++|.|++||||||+++.|.+.+.. .|..+. +++.+..... .+.+....... ...+...+..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~-~g~~v~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEA-RGYEVV-LTREPGGTPI---------GEAIRELLLDPEDEKMDPRAELLLFAA 69 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEE-EEeCCCCCch---------HHHHHHHHhccCccCCCHHHHHHHHHH
Confidence 36899999999999999999988752 343332 2221111000 01111111100 0111111111
Q ss_pred cccCCcHHHHHHHHHhCCceEEEe---------------cHHHHHHHH---cCCCCeEEEEEcCCCHHHHHHHHHcCCCC
Q 019061 208 NLYGTSVEAVEAVADAGKRCILDI---------------DVQGARSVR---ASPLDAIFIFICPPSMEELEERLRARGTE 269 (346)
Q Consensus 208 ~~yg~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l~---~~~~~~~~ill~~p~~~~l~eRL~~R~~~ 269 (346)
..+....+.+......+..+++|- .......+. .....+..++....+.+++.+|+..|+..
T Consensus 70 ~r~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~ 149 (200)
T cd01672 70 DRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRD 149 (200)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 111112223333345677777771 111222221 12222333333333468999999998753
Q ss_pred CH-----HHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHH
Q 019061 270 TE-----DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 270 ~~-----e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
.. ....+++......+.... ...+..+..+.+++++.+++...|.
T Consensus 150 ~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 150 DRDEQEGLEFHERVREGYLELAAQE-PERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 22 344455544443333211 1123445555688888887776653
No 372
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.63 E-value=1e-06 Score=77.57 Aligned_cols=81 Identities=27% Similarity=0.187 Sum_probs=52.9
Q ss_pred CCceEEEecHHHHHHH---HcCC----CCeEEEEEcCCCHHHHHHHHHcCC-------------------------CCCH
Q 019061 224 GKRCILDIDVQGARSV---RASP----LDAIFIFICPPSMEELEERLRARG-------------------------TETE 271 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l---~~~~----~~~~~ill~~p~~~~l~eRL~~R~-------------------------~~~~ 271 (346)
+..+++|+.|....+. .... .....+++.. +.+.+.+|+..|. +++.
T Consensus 77 ~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~-~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~ 155 (194)
T cd01428 77 KKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDV-PDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNE 155 (194)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCH
Confidence 5678999877755443 2222 2233444444 4788888888764 4567
Q ss_pred HHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHH
Q 019061 272 DQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEE 305 (346)
Q Consensus 272 e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~ 305 (346)
+.+++|+..|... +++|...+.+..|.++.++++
T Consensus 156 ~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~ 193 (194)
T cd01428 156 ETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDE 193 (194)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCc
Confidence 8999999998865 455555566777777766553
No 373
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=8.1e-09 Score=107.51 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=43.7
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+.+.+|...++.+.++.+.+|.+++|+||||||||||+++|++..++..|
T Consensus 7 ls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G 56 (638)
T PRK10636 7 LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGG 56 (638)
T ss_pred EEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34567777777777888889999999999999999999999999888888
No 374
>PLN02842 nucleotide kinase
Probab=98.61 E-value=7.8e-07 Score=89.02 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=40.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHH----HhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 265 ARGTETEDQILKRLRNAKEEI----KQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 265 ~R~~~~~e~i~~Rl~~~~~~i----~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
.|.+++++.+++|+..|.+.. .+| ...+..|.++.+++++++++.+++..+.
T Consensus 149 ~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y--~~rl~~IDAsqs~EeVfeeI~~iL~~~L 204 (505)
T PLN02842 149 TRPDDTEEKVKARLQIYKKNAEAILSTY--SDIMVKIDGNRPKEVVFEEISSLLSQIQ 204 (505)
T ss_pred cCCCCCHHHHHHHHHHHHHHhhhHHHhc--CcEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 345788999999999998763 333 3456778888899999999999887664
No 375
>PRK13974 thymidylate kinase; Provisional
Probab=98.60 E-value=1.7e-06 Score=77.82 Aligned_cols=173 Identities=19% Similarity=0.187 Sum_probs=87.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccc-----eeeecCCcccccccCCeeEEeeChhHHHHHHhcc--c-----h
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGF-----SVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDG--K-----F 199 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~-----~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~--~-----~ 199 (346)
+|.+++|.|+.||||||+++.|.+.++. .|. .+. .++.+.... ....+...+... . .
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~-~g~~~~~~~~~-~~~~p~~~~---------~g~~ir~~l~~~~~~~~~~~~ 70 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPS-SGLMPKGAKLI-ITREPGGTL---------LGKSLRELLLDTSKDNSPSPL 70 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-cCccccCCeee-eeeCCCCCc---------hHHHHHHHHcCCCcccCCCHH
Confidence 5889999999999999999999988752 331 111 111111000 011122211100 0 0
Q ss_pred hhhhhhhccccCCcHHHHHHHHHhCCceEEE----------e-----cHHHHHHHHc---CCCCeEEEEEcCCCHHHHHH
Q 019061 200 LEFASVHGNLYGTSVEAVEAVADAGKRCILD----------I-----DVQGARSVRA---SPLDAIFIFICPPSMEELEE 261 (346)
Q Consensus 200 ~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD----------~-----~~~~~~~l~~---~~~~~~~ill~~p~~~~l~e 261 (346)
.+..-|..+.+......+...+..+..++.| + +.+.+..+.. ....+-.+++...+.+++.+
T Consensus 71 ~~~llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~ 150 (212)
T PRK13974 71 AELLLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIR 150 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHH
Confidence 0001111111111112234445567666666 1 1112333321 22234334444444788999
Q ss_pred HHHcCCCCCHHHHHHHHHHHH----HHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 262 RLRARGTETEDQILKRLRNAK----EEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 262 RL~~R~~~~~e~i~~Rl~~~~----~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
|+.+|+++..+ +|...+. ..+.++...+.+..|.++.+++++.+++.+++.+..
T Consensus 151 R~~~R~dD~~e---~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~ 208 (212)
T PRK13974 151 RRKNRKPDRIE---AEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNF 208 (212)
T ss_pred HHHhcccCchh---hhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99888655322 2222222 223333334556778888899999999999887653
No 376
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.60 E-value=7.1e-09 Score=95.98 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=47.9
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~ 190 (346)
+..+.++...+|++++|+|+||+|||||+++|++.+++..| .+..-... ........++|+|+...++
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~ 107 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG-KIVIDGIDISKLPLHTLRSRLSIILQDPILF 107 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCC-eEEECCEEhhhCCHHHHhhhEEEECCCCccc
Confidence 45555677789999999999999999999999999988888 44321111 1111124578888876544
No 377
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.60 E-value=4.6e-07 Score=78.33 Aligned_cols=185 Identities=16% Similarity=0.102 Sum_probs=104.0
Q ss_pred HHHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccccc--------------
Q 019061 110 VREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAM-------------- 175 (346)
Q Consensus 110 ~~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~-------------- 175 (346)
++++-|.||..-++...++...+|.++.++|.|||||||++++|.=+..|..| .|.......+..
T Consensus 9 v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G-~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 9 VEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAG-SIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred hhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCc-eEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 45677899988888877777889999999999999999999999877777777 332111111100
Q ss_pred ---ccCCeeEEeeChhHHHHHHhccchhhhhh-hhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEE
Q 019061 176 ---EKDGVHYHFTERSVMEKAIKDGKFLEFAS-VHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFI 251 (346)
Q Consensus 176 ---~~~g~~y~f~s~~~~~~~~~~~~~~e~~~-~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill 251 (346)
-+...+.+|+++++...+ +++++.. ..-+..|.++..+.+..+. .+.+
T Consensus 88 ~~r~Rs~L~mVFQ~FNLWsHm----tvLeNViEaPvhVLg~~k~ea~e~Ae~--------------~L~k---------- 139 (256)
T COG4598 88 LQRLRTRLGMVFQHFNLWSHM----TVLENVIEAPVHVLGVSKAEAIERAEK--------------YLAK---------- 139 (256)
T ss_pred HHHHHHHhhHhhhhcchhHHH----HHHHHHHhcchHhhcCCHHHHHHHHHH--------------HHHH----------
Confidence 011234556766666665 4555432 1223345554432222111 0111
Q ss_pred cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecc
Q 019061 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVT 331 (346)
Q Consensus 252 ~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~ 331 (346)
-.+.++-.......+.+.+||..++++..-. ..--+||.--...|++-+ .++..++..|..+ +++-+.+.|
T Consensus 140 -----VGi~ek~~~YP~~LSGGQQQR~aIARaLame-P~vmLFDEPTSALDPElV-gEVLkv~~~LAeE--grTMv~VTH 210 (256)
T COG4598 140 -----VGIAEKADAYPAHLSGGQQQRVAIARALAME-PEVMLFDEPTSALDPELV-GEVLKVMQDLAEE--GRTMVVVTH 210 (256)
T ss_pred -----hCchhhhhcCccccCchHHHHHHHHHHHhcC-CceEeecCCcccCCHHHH-HHHHHHHHHHHHh--CCeEEEEee
Confidence 1122222223333467889999998866332 111234444444466553 5566678777543 455444444
Q ss_pred c
Q 019061 332 Y 332 (346)
Q Consensus 332 ~ 332 (346)
-
T Consensus 211 E 211 (256)
T COG4598 211 E 211 (256)
T ss_pred e
Confidence 3
No 378
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=1.5e-08 Score=105.57 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=48.1
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeC
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTE 186 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s 186 (346)
.+.|+...++.+.++.+.+|++++|+||||||||||+++|++..++..| .+..... ..++|+++.
T Consensus 319 ~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G-~i~~~~~-------~~igy~~Q~ 383 (638)
T PRK10636 319 SAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG-EIGLAKG-------IKLGYFAQH 383 (638)
T ss_pred EEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCC-------EEEEEecCc
Confidence 3445555555556677789999999999999999999999999988888 4432110 136777775
No 379
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.5e-07 Score=84.21 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=45.4
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc--CCCccceeee-----cCCcccccccCCeeEEeeChhHHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSH-----TTRAPRAMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~--~~~~g~~i~~-----ttr~~~~~~~~g~~y~f~s~~~~~~ 192 (346)
.++...+++...|++.+|+||||||||||++.|++.- ..+.| .|.. +.-++.+....|....||.+..++.
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G-~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG-EILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecc-eEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 3444455667899999999999999999999999864 33444 3321 1112222233455555777665543
No 380
>PTZ00243 ABC transporter; Provisional
Probab=98.56 E-value=2.5e-07 Score=104.86 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=103.3
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKD 196 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~ 196 (346)
.++.+.++.+.+|+.++|+|+||||||||++.|.+.+++..| .|..-..+. ....+..++|++|+..+|.
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G-~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~----- 1397 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG-EIRVNGREIGAYGLRELRRQFSMIPQDPVLFD----- 1397 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEcccCCHHHHHhcceEECCCCcccc-----
Confidence 355666677889999999999999999999999999999888 443222111 1112356889999887664
Q ss_pred cchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHH
Q 019061 197 GKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (346)
Q Consensus 197 ~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~ 276 (346)
+++.+|....+ ..+.+.+.++++.... + ..+... .+.++.++..+|...+.+.+|
T Consensus 1398 gTIreNIdp~~---~~sdeeI~~Al~~a~l---~------~~I~~l-------------p~Gldt~vge~G~nLSgGQrQ 1452 (1560)
T PTZ00243 1398 GTVRQNVDPFL---EASSAEVWAALELVGL---R------ERVASE-------------SEGIDSRVLEGGSNYSVGQRQ 1452 (1560)
T ss_pred ccHHHHhCccc---CCCHHHHHHHHHHCCC---h------HHHhhC-------------cccccccccCCcCcCCHHHHH
Confidence 36666664322 1233445544443111 0 000000 134555666777777899999
Q ss_pred HHHHHHHHHHhccCCCCceEEEcCCCHHHH-HHHHHHHHHHhhcccCceeeEeecccc
Q 019061 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEEC-YENLKVICYCLMQISDNLIIFLFVTYP 333 (346)
Q Consensus 277 Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~-~~~l~~iI~~l~~~~~~~~~~~~~~~~ 333 (346)
|+..+++.+....+.-++|+--. ++|.. .+.+.+.|.+.. ..++.+++.|..
T Consensus 1453 rLaLARALL~~~~~ILlLDEATS--aLD~~te~~Iq~~L~~~~---~~~TvI~IAHRl 1505 (1560)
T PTZ00243 1453 LMCMARALLKKGSGFILMDEATA--NIDPALDRQIQATVMSAF---SAYTVITIAHRL 1505 (1560)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCc--cCCHHHHHHHHHHHHHHC---CCCEEEEEeccH
Confidence 99999988753111111122222 33332 345666666543 234444555533
No 381
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.56 E-value=1.2e-07 Score=102.17 Aligned_cols=90 Identities=17% Similarity=0.105 Sum_probs=66.5
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee--ecCCc--ccccccCCeeEEeeChhHHHHHHhccchhhhh
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS--HTTRA--PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~--~ttr~--~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~ 203 (346)
+...+|++++++|+|||||||++++|.|..++..|.... |.-+. .........||-+|...+++.+ +..|+.
T Consensus 586 ~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~l----T~rEhL 661 (885)
T KOG0059|consen 586 FAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEEL----TGREHL 661 (885)
T ss_pred EEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhc----cHHHHH
Confidence 456789999999999999999999999999999885543 21111 1111234578888887777776 788888
Q ss_pred hhhccccCCcHHHHHHHH
Q 019061 204 SVHGNLYGTSVEAVEAVA 221 (346)
Q Consensus 204 ~~~~~~yg~~~~~i~~~~ 221 (346)
++.+.+.|.+..++.+..
T Consensus 662 ~~~arlrG~~~~di~~~v 679 (885)
T KOG0059|consen 662 EFYARLRGLPRSDIGSAI 679 (885)
T ss_pred HHHHHHcCCChhHHHHHH
Confidence 888888887766655543
No 382
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.56 E-value=1.7e-07 Score=80.16 Aligned_cols=92 Identities=13% Similarity=0.019 Sum_probs=54.7
Q ss_pred ccCccccchhhccccCCCCeeEEEeCCCh---HHHHH----HHHHcCCeEEEeccCc-c-----------C------CCC
Q 019061 79 AVLLNEDRILVIKKGSSSDDCLWFLEVDT---PYVRE----QKKVVGAEVVAWSKGV-I-----------G------NVE 133 (346)
Q Consensus 79 ~~~l~~dr~l~~~~~~~~~~~i~~~k~D~---~~~~~----~~~~~g~~v~~~~~~~-~-----------~------~~g 133 (346)
...+ .++|.. ...+.++++++||+|. +.... +.+.+...++..|+.. . . .++
T Consensus 26 ~~~i--~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~~~~~~~~~ 102 (157)
T cd01858 26 CKHV--EEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFSKLHSDKKQ 102 (157)
T ss_pred CHHH--HHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHHhhhccccc
Confidence 3455 566653 2346889999999993 22222 2222222234444321 0 0 124
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA 174 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~ 174 (346)
..++++|+||+|||||+|.|.+......+ .++.+|+....
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~ 142 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQY 142 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEE
Confidence 45779999999999999999987554444 55556665443
No 383
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=4.9e-07 Score=93.57 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=64.5
Q ss_pred CCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC---CccceeeecCCccccc-ccCCeeEEeeChhHHHHH
Q 019061 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS---MFGFSVSHTTRAPRAM-EKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 118 g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~---~~g~~i~~ttr~~~~~-~~~g~~y~f~s~~~~~~~ 193 (346)
.++.+..+.++...+|++.+++||||||||||+++|++..+. ..| .+....+..... ...-.+|+-|+..+++.+
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G-~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSG-EILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceE-EEEECCccCchhhhhheeEEEcccccccccc
Confidence 456677777778889999999999999999999999998764 345 554444332222 223467888877777776
Q ss_pred Hhccchhhhhhhhccc
Q 019061 194 IKDGKFLEFASVHGNL 209 (346)
Q Consensus 194 ~~~~~~~e~~~~~~~~ 209 (346)
++.|+..|.+.+
T Consensus 120 ----TV~EtL~f~A~l 131 (613)
T KOG0061|consen 120 ----TVRETLRFSALL 131 (613)
T ss_pred ----cHHHHHHHHHHh
Confidence 888888888877
No 384
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.55 E-value=3.1e-07 Score=95.44 Aligned_cols=86 Identities=17% Similarity=0.139 Sum_probs=56.9
Q ss_pred CeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC---ccceeeecCCccc-ccccCCeeEEeeChhHHHHHH
Q 019061 119 AEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAI 194 (346)
Q Consensus 119 ~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~---~g~~i~~ttr~~~-~~~~~g~~y~f~s~~~~~~~~ 194 (346)
.+.+..+.++...+|++++|+||||||||||+++|.+..++. .| .+........ .......+|+++....++.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G-~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l- 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSG-SVLLNGMPIDAKEMRAISAYVQQDDLFIPTL- 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEECCHHHHhhhceeeccccccCccC-
Confidence 344555666778899999999999999999999999987653 35 3433222211 11123467888876655544
Q ss_pred hccchhhhhhhhccc
Q 019061 195 KDGKFLEFASVHGNL 209 (346)
Q Consensus 195 ~~~~~~e~~~~~~~~ 209 (346)
++.|+..+...+
T Consensus 115 ---TV~e~l~f~~~~ 126 (617)
T TIGR00955 115 ---TVREHLMFQAHL 126 (617)
T ss_pred ---cHHHHHHHHHhc
Confidence 667766655443
No 385
>PLN03073 ABC transporter F family; Provisional
Probab=98.55 E-value=1.9e-08 Score=105.79 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=45.2
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~ 187 (346)
.++.+.++.+.+|++++|+||||||||||+++|++..+|..| .+....+ ..++|+++..
T Consensus 523 ~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G-~I~~~~~-------~~igyv~Q~~ 581 (718)
T PLN03073 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG-TVFRSAK-------VRMAVFSQHH 581 (718)
T ss_pred eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-eEEECCc-------eeEEEEeccc
Confidence 455556677789999999999999999999999999998888 5543211 2367877753
No 386
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.55 E-value=2.1e-07 Score=104.53 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=55.1
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC---CCccceeeecCCcccccccCCeeEEeeChhHHHHHHhc
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKD 196 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~---~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~ 196 (346)
+.++.+.++...+|++++|+||||||||||+++|.+..+ +..| .+.....+.........+|++|....+..+
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G-~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~--- 851 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGG-DRLVNGRPLDSSFQRSIGYVQQQDLHLPTS--- 851 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEECChhhhcceeeecccccCCCCC---
Confidence 345566667778999999999999999999999999876 3446 443322221111223477888865444433
Q ss_pred cchhhhhhhhc
Q 019061 197 GKFLEFASVHG 207 (346)
Q Consensus 197 ~~~~e~~~~~~ 207 (346)
++.|+..+..
T Consensus 852 -Tv~E~L~~~a 861 (1394)
T TIGR00956 852 -TVRESLRFSA 861 (1394)
T ss_pred -CHHHHHHHHH
Confidence 6667666544
No 387
>PRK06762 hypothetical protein; Provisional
Probab=98.55 E-value=2.7e-06 Score=73.15 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.+++|.|++||||||+++.|...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 388
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.54 E-value=8e-07 Score=91.08 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=52.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~ 193 (346)
+..+.++...+|+.++|+||||||||||++.|++.+++..| .+.....+. ........+|++++..+|...
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t 412 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG-EILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL 412 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEECCCCCHHHHhhheEEEecChhHHHHh
Confidence 44555667789999999999999999999999999999888 553221111 112235678999988777653
No 389
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.54 E-value=4e-07 Score=77.69 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=58.9
Q ss_pred ccccCCCCeeEEEeCCCh---HHHHH----HHHHcCCeEEEeccCc-c-------------------------CCCCCeE
Q 019061 90 IKKGSSSDDCLWFLEVDT---PYVRE----QKKVVGAEVVAWSKGV-I-------------------------GNVEKPV 136 (346)
Q Consensus 90 ~~~~~~~~~~i~~~k~D~---~~~~~----~~~~~g~~v~~~~~~~-~-------------------------~~~g~~~ 136 (346)
.+...+.+.++++||+|. +.... +.+..++.++..|+.. . ...+..+
T Consensus 24 ~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 103 (155)
T cd01849 24 LIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITV 103 (155)
T ss_pred HHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEE
Confidence 345568999999999994 22222 2234467778777651 0 1245779
Q ss_pred EEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccc
Q 019061 137 VITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME 176 (346)
Q Consensus 137 ~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~ 176 (346)
+++|.+|+||||++|.|.+......+ ..++||+......
T Consensus 104 ~~~G~~~~GKstlin~l~~~~~~~~~-~~~~~t~~~~~~~ 142 (155)
T cd01849 104 GVIGYPNVGKSSVINALLNKLKLKVG-NVPGTTTSQQEVK 142 (155)
T ss_pred EEEccCCCCHHHHHHHHHcccccccc-CCCCcccceEEEE
Confidence 99999999999999999987644344 4467777765443
No 390
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=5.9e-06 Score=70.23 Aligned_cols=157 Identities=19% Similarity=0.251 Sum_probs=88.3
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhc-c-chhhhhhhhccccCC
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKD-G-KFLEFASVHGNLYGT 212 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~-~-~~~e~~~~~~~~yg~ 212 (346)
.+.+.||+||||||+++.|+..+.. ... ++...|..+..+ | .+.||.++...-...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl----~~v------------------saG~iFR~~A~e~gmsl~ef~~~AE~~p~i 59 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL----KLV------------------SAGTIFREMARERGMSLEEFSRYAEEDPEI 59 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC----cee------------------eccHHHHHHHHHcCCCHHHHHHHHhcCchh
Confidence 5789999999999999999987532 111 112333332111 1 455666555544333
Q ss_pred cHHH---HHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHhc
Q 019061 213 SVEA---VEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED-QILKRLRNAKEEIKQG 288 (346)
Q Consensus 213 ~~~~---i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e-~i~~Rl~~~~~~i~~~ 288 (346)
..+. ..+.. ....+++++...++... ....+.|++..| +++..+|+..|..-+.+ ..++-..+-..+...|
T Consensus 60 D~~iD~rq~e~a-~~~nvVlegrLA~Wi~k---~~adlkI~L~Ap-l~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY 134 (179)
T COG1102 60 DKEIDRRQKELA-KEGNVVLEGRLAGWIVR---EYADLKIWLKAP-LEVRAERIAKREGIDVDEALAETVEREESEKKRY 134 (179)
T ss_pred hHHHHHHHHHHH-HcCCeEEhhhhHHHHhc---cccceEEEEeCc-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3221 12222 35567777665554322 234455667666 88999999998654433 3322222222222222
Q ss_pred c--------CCCCceEEEcCC--CHHHHHHHHHHHHHHhh
Q 019061 289 K--------SSGIFDHILYND--KLEECYENLKVICYCLM 318 (346)
Q Consensus 289 ~--------~~~~~~~Vi~n~--~le~~~~~l~~iI~~l~ 318 (346)
. ....+|.|+.+. ++++++.-+...+..+.
T Consensus 135 ~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~ 174 (179)
T COG1102 135 KKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALS 174 (179)
T ss_pred HHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhc
Confidence 1 134578888766 78888777777776654
No 391
>PLN03140 ABC transporter G family member; Provisional
Probab=98.53 E-value=4.3e-08 Score=110.01 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=55.8
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC---ccceeeecCCcccc-cccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~---~g~~i~~ttr~~~~-~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
++.+.++.+.+|++++|+||||||||||+++|++.+.+. .| .+......... ......+|+++....++.+
T Consensus 180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G-~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l---- 254 (1470)
T PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSG-EITYNGYRLNEFVPRKTSAYISQNDVHVGVM---- 254 (1470)
T ss_pred eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEechhhcccceeEEecccccCCCcC----
Confidence 445556777899999999999999999999999998765 56 44432221111 1123478888876555554
Q ss_pred chhhhhhhhccc
Q 019061 198 KFLEFASVHGNL 209 (346)
Q Consensus 198 ~~~e~~~~~~~~ 209 (346)
++.|+..+...+
T Consensus 255 TV~EtL~f~a~~ 266 (1470)
T PLN03140 255 TVKETLDFSARC 266 (1470)
T ss_pred cHHHHHHHHHHh
Confidence 566666554443
No 392
>PLN03130 ABC transporter C family member; Provisional
Probab=98.53 E-value=1.7e-07 Score=106.48 Aligned_cols=168 Identities=18% Similarity=0.123 Sum_probs=96.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCc-cceeeecCCcccccccCCeeEEeeChhHHHHHHhccchh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF-GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~-g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~ 200 (346)
+..+.++...+|+.++|+||+|||||||++.|.+.+++.. | .+.. ...++|+.|.+-+|. ++..
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG-~I~l---------~~~Iayv~Q~p~Lfn-----gTIr 696 (1622)
T PLN03130 632 TLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA-SVVI---------RGTVAYVPQVSWIFN-----ATVR 696 (1622)
T ss_pred eeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCc-eEEE---------cCeEEEEcCccccCC-----CCHH
Confidence 4455566788999999999999999999999999999887 6 4431 234778888765443 3667
Q ss_pred hhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHH
Q 019061 201 EFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (346)
Q Consensus 201 e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~ 280 (346)
++..+... | ..+...++++.. -++-+.+. + .+..+..+..+|...+++.+||+..
T Consensus 697 eNI~fg~~-~--d~e~y~~vl~a~---~L~~di~~---L----------------P~Gd~T~IGe~G~~LSGGQKQRIaL 751 (1622)
T PLN03130 697 DNILFGSP-F--DPERYERAIDVT---ALQHDLDL---L----------------PGGDLTEIGERGVNISGGQKQRVSM 751 (1622)
T ss_pred HHHhCCCc-c--cHHHHHHHHHHh---CcHHHHHh---C----------------CCcccccccCCCCCCCHHHHHHHHH
Confidence 77655432 2 233333333221 11101100 0 0122334556677778999999999
Q ss_pred HHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccc
Q 019061 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYP 333 (346)
Q Consensus 281 ~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~ 333 (346)
+++.+... ..-++|.....-|.+....-+.+++..+. ++.+.+.+.|..
T Consensus 752 ARAly~~~-~IlLLDEptSALD~~~~~~I~~~~l~~~l---~~kTvIlVTH~l 800 (1622)
T PLN03130 752 ARAVYSNS-DVYIFDDPLSALDAHVGRQVFDKCIKDEL---RGKTRVLVTNQL 800 (1622)
T ss_pred HHHHhCCC-CEEEECCCccccCHHHHHHHHHHHhhHHh---cCCEEEEEECCH
Confidence 99876542 11123333333344333223344454332 234444556544
No 393
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.53 E-value=2.4e-07 Score=104.95 Aligned_cols=175 Identities=14% Similarity=0.028 Sum_probs=102.1
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|+.++|+|+||||||||++.|.+.+++..| .|..-..+. ...-+...+|++|++.+|..
T Consensus 1301 vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G-~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g----- 1374 (1522)
T TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEG-EIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG----- 1374 (1522)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCC-eEEECCEEccccCHHHHHhcCeEECCCCcccCc-----
Confidence 45555677889999999999999999999999999999888 443221111 11223457888888877653
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++....+ ..+.+.+.++++.... + ..+... ...++.++..+|..-+.+.+||
T Consensus 1375 TIr~NLdp~~---~~sdeei~~al~~a~l---~------~~I~~l-------------p~GLdt~v~e~G~~LSgGQrQr 1429 (1522)
T TIGR00957 1375 SLRMNLDPFS---QYSDEEVWWALELAHL---K------TFVSAL-------------PDKLDHECAEGGENLSVGQRQL 1429 (1522)
T ss_pred cHHHHcCccc---CCCHHHHHHHHHHcCc---H------HHHhhC-------------ccCCCceecCCCCcCCHHHHHH
Confidence 5666654322 1234444444432110 0 000000 1245555666777778999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTY 332 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~ 332 (346)
+..+++.+...+ .-++|+--.+-|.+ +.+.+.+.|++.. ++++.+++.|-
T Consensus 1430 l~LARALLr~~~-ILiLDEaTSalD~~-Te~~Iq~~l~~~~---~~~TvI~IAHR 1479 (1522)
T TIGR00957 1430 VCLARALLRKTK-ILVLDEATAAVDLE-TDNLIQSTIRTQF---EDCTVLTIAHR 1479 (1522)
T ss_pred HHHHHHHHcCCC-EEEEECCcccCCHH-HHHHHHHHHHHHc---CCCEEEEEecC
Confidence 999998876521 11122222222432 3345666666543 23444466653
No 394
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.52 E-value=4.3e-08 Score=95.87 Aligned_cols=131 Identities=22% Similarity=0.283 Sum_probs=77.2
Q ss_pred eccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc---c-ccCCeeEEeeChhHHHHHHhccch
Q 019061 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA---M-EKDGVHYHFTERSVMEKAIKDGKF 199 (346)
Q Consensus 124 ~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~---~-~~~g~~y~f~s~~~~~~~~~~~~~ 199 (346)
.+.++...+|++++|+||||+||||+++.|...+....| +|..-....+. . -+..+|.++|+.-+|.. +.
T Consensus 555 ~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sG-sI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-----TI 628 (790)
T KOG0056|consen 555 SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG-SITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-----TI 628 (790)
T ss_pred ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCc-eEEEcCchHHHHHHHHHHHhcCcccCcceeecc-----ee
Confidence 334566779999999999999999999999999888777 55422211111 1 11234455555444432 22
Q ss_pred hhhhhhhccccCCcH---HHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHH
Q 019061 200 LEFASVHGNLYGTSV---EAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (346)
Q Consensus 200 ~e~~~~~~~~yg~~~---~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~ 276 (346)
..+.+ |+.+. +.+.++.+.. +++.. |+-. ++....|+.+||-..+++.+|
T Consensus 629 ~yNIr-----yak~~AsneevyaAAkAA-------------~IHdr------Il~f---PegY~t~VGERGLkLSGGEKQ 681 (790)
T KOG0056|consen 629 LYNIR-----YAKPSASNEEVYAAAKAA-------------QIHDR------ILQF---PEGYNTRVGERGLKLSGGEKQ 681 (790)
T ss_pred eehee-----ecCCCCChHHHHHHHHHh-------------hHHHH------HhcC---chhhhhhhhhcccccCCcchh
Confidence 22222 44332 3332222211 11100 0000 256677888888888899999
Q ss_pred HHHHHHHHHHh
Q 019061 277 RLRNAKEEIKQ 287 (346)
Q Consensus 277 Rl~~~~~~i~~ 287 (346)
|+++++..++.
T Consensus 682 RVAiARtiLK~ 692 (790)
T KOG0056|consen 682 RVAIARTILKA 692 (790)
T ss_pred hHHHHHHHhcC
Confidence 99999977654
No 395
>PRK13973 thymidylate kinase; Provisional
Probab=98.52 E-value=5.4e-06 Score=74.65 Aligned_cols=174 Identities=15% Similarity=0.058 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhcc---c---hhhhhhh
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDG---K---FLEFASV 205 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~---~---~~e~~~~ 205 (346)
+|..++|-|+.||||||+++.|...+.. .|..+..|..+. ... ..+.+...+... . ..+..-+
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~-~g~~~~~~~~p~-~~~---------~g~~ir~~l~~~~~~~~~~~~~~ll~ 70 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRA-AGYDVLVTREPG-GSP---------GAEAIRHVLLSGAAELYGPRMEALLF 70 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEECCC-CCc---------hHHHHHHHHcCCCccCCCHHHHHHHH
Confidence 4789999999999999999999988753 343443332211 000 011111111100 0 0011111
Q ss_pred hccccCCcHHHHHHHHHhCCceEEEecH---------------HHHHHHHc---CCCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 206 HGNLYGTSVEAVEAVADAGKRCILDIDV---------------QGARSVRA---SPLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 206 ~~~~yg~~~~~i~~~~~~~~~~iLD~~~---------------~~~~~l~~---~~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
.+.-.......+...+..+..++.|-.. ..+..+.. ....+-.+++...+.+++.+|+..|+
T Consensus 71 ~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 71 AAARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 1111111122345556677778777311 12222221 11234344444444789999998775
Q ss_pred CC---------CHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 268 TE---------TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 268 ~~---------~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
.. +.+.++++.+.|.+....+ ...+..|.++.+++++.+++..++....
T Consensus 151 ~~~~~~~~e~~~~~~~~~~~~~y~~l~~~~--~~~~~~Ida~~~~e~V~~~I~~~i~~~~ 208 (213)
T PRK13973 151 GSDTPDRFEKEDLAFHEKRREAFLQIAAQE--PERCVVIDATASPEAVAAEIWAAVDQRL 208 (213)
T ss_pred CCCccCchhhchHHHHHHHHHHHHHHHHhC--CCcEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 21 2234455555555433322 2346677788899999999999887653
No 396
>PRK01184 hypothetical protein; Provisional
Probab=98.51 E-value=8.3e-06 Score=71.38 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=55.0
Q ss_pred CCceEEEec--HHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCC----CCHHHHHHHHHHHHHHHHhccCCCCceEE
Q 019061 224 GKRCILDID--VQGARSVRASPLDAIFIFICPPSMEELEERLRARGT----ETEDQILKRLRNAKEEIKQGKSSGIFDHI 297 (346)
Q Consensus 224 ~~~~iLD~~--~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~----~~~e~i~~Rl~~~~~~i~~~~~~~~~~~V 297 (346)
+..+++|+. +.....+++.......++...++.+...+|+..|+. .+.+.+.+|..... .+...+.....+.+
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~-~~~~~~~~~~ad~v 158 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDEREL-SWGIGEVIALADYM 158 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHh-ccCHHHHHHhcCEE
Confidence 567888974 334444444333233333444558889999998862 23566766664421 11000011235677
Q ss_pred EcCC-CHHHHHHHHHHHHHHhhc
Q 019061 298 LYND-KLEECYENLKVICYCLMQ 319 (346)
Q Consensus 298 i~n~-~le~~~~~l~~iI~~l~~ 319 (346)
+.|+ ++++..+++.+++..+.+
T Consensus 159 I~N~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 159 IVNDSTLEEFRARVRKLLERILR 181 (184)
T ss_pred EeCCCCHHHHHHHHHHHHHHHhc
Confidence 7665 899999999988876643
No 397
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.50 E-value=2.1e-08 Score=101.40 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=47.2
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
++.+.+|.+.++...++...+|..++|+|+||+|||||+++|.+...+..| .|.
T Consensus 8 ~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G-~i~ 61 (530)
T COG0488 8 NLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG-EVT 61 (530)
T ss_pred eeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCC-eEe
Confidence 345678888888888888889999999999999999999999999988888 443
No 398
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.49 E-value=3.1e-08 Score=101.67 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=50.7
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~ 192 (346)
+..+.++...+|++++|+||||+|||||++.|.+.++|..| .+........ .......+|+++...+|..
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ 430 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG-EILLDGAAVSADSRDDYRDLFSAIFADFHLFDD 430 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhhCcEEccChhhhhh
Confidence 44555677889999999999999999999999999999888 5543222211 1122456788888766654
No 399
>PLN03232 ABC transporter C family member; Provisional
Probab=98.49 E-value=2.3e-07 Score=104.95 Aligned_cols=127 Identities=19% Similarity=0.142 Sum_probs=79.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e 201 (346)
+..+.++...+|+.++++||||||||||++.|.+.+++..|.... ....++|+.|..-+|. ++..|
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~---------~~~~Iayv~Q~p~Lf~-----gTIre 697 (1495)
T PLN03232 632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV---------IRGSVAYVPQVSWIFN-----ATVRE 697 (1495)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE---------ecCcEEEEcCcccccc-----ccHHH
Confidence 445556778899999999999999999999999999887762221 1234788888876553 36677
Q ss_pred hhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 019061 202 FASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (346)
Q Consensus 202 ~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~ 281 (346)
+..+... + ..+...++++.. -++-+ +... .+..+..+..+|..-+++.+||+..+
T Consensus 698 NI~fg~~-~--~~e~~~~vl~~~---~L~~d------i~~L-------------p~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 698 NILFGSD-F--ESERYWRAIDVT---ALQHD------LDLL-------------PGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred HhhcCCc-c--CHHHHHHHHHHh---CCHHH------HHhC-------------CCCCCceecCCCcccCHHHHHHHHHH
Confidence 7665432 2 233344333321 00000 0000 01122334556666789999999999
Q ss_pred HHHHHh
Q 019061 282 KEEIKQ 287 (346)
Q Consensus 282 ~~~i~~ 287 (346)
++.+..
T Consensus 753 RAly~~ 758 (1495)
T PLN03232 753 RAVYSN 758 (1495)
T ss_pred HHHhcC
Confidence 987654
No 400
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.48 E-value=6.1e-07 Score=101.11 Aligned_cols=78 Identities=10% Similarity=0.124 Sum_probs=55.7
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeee-cCCccc---c-cccCCeeEEeeChhHHHHHHhc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-TTRAPR---A-MEKDGVHYHFTERSVMEKAIKD 196 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~-ttr~~~---~-~~~~g~~y~f~s~~~~~~~~~~ 196 (346)
+..+.++.+.+|++++|+||||||||||+++|.+.++|..| .|.. ...... . ..+..++|++|...+|..
T Consensus 400 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~---- 474 (1466)
T PTZ00265 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEG-DIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN---- 474 (1466)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCC-eEEEeCCcchhhCCHHHHHHhccEecccccchhc----
Confidence 55556677889999999999999999999999999999888 4432 211111 1 123457899888776642
Q ss_pred cchhhhhhh
Q 019061 197 GKFLEFASV 205 (346)
Q Consensus 197 ~~~~e~~~~ 205 (346)
+..++..+
T Consensus 475 -TI~eNI~~ 482 (1466)
T PTZ00265 475 -SIKNNIKY 482 (1466)
T ss_pred -cHHHHHHh
Confidence 55566554
No 401
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.48 E-value=5.4e-07 Score=80.12 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=45.1
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHH
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVIC 314 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI 314 (346)
..++++.. +.++..+|+..|+..+++.+.+|+.. ++.........+.||.|+ ++++..+++.+++
T Consensus 127 D~ii~V~a-~~e~r~~Rl~~R~g~s~e~~~~ri~~---Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 127 SEIWVVDC-SPEQQLQRLIKRDGLTEEEAEARINA---QWPLEEKVKLADVVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred CEEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHh---CCCHHHHHhhCCEEEECCCCHHHHHHHHHHHH
Confidence 34455554 48899999999987788888888854 322222234567888887 8888888877665
No 402
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.47 E-value=8.7e-07 Score=84.06 Aligned_cols=120 Identities=26% Similarity=0.248 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCC--------ccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhh
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~--------~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~ 203 (346)
++++++|+||+||||||++..|+..+... .-..+.++|+.++..+..++.|+|.+...+......+.|.+..
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA 82 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence 45789999999999999999998876431 1113457999999999999999998865544433333444332
Q ss_pred hhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 204 ~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
.+.++++...++..++++--.-..+ ....... ..+++...+.+++..+
T Consensus 83 ----------~~~i~~i~~~gk~pIlvGGt~~Y~~---al~~g~~--~~p~~~~~~r~~l~~~ 130 (307)
T PRK00091 83 ----------LAAIADILARGKLPILVGGTGLYIK---ALLEGLS--PLPPADPELRAELEAL 130 (307)
T ss_pred ----------HHHHHHHHhCCCCEEEECcHHHHHH---HhccCCC--CCCCCCHHHHHHHHHH
Confidence 3556667778888888853322111 1111111 3455556666666554
No 403
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.2e-08 Score=99.04 Aligned_cols=135 Identities=17% Similarity=0.152 Sum_probs=75.4
Q ss_pred EeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc-cc---cCCeeEEeeChhHHHHHHhccc
Q 019061 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-ME---KDGVHYHFTERSVMEKAIKDGK 198 (346)
Q Consensus 123 ~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~---~~g~~y~f~s~~~~~~~~~~~~ 198 (346)
..+.++...+|+.++++|+|||||||+++.|.+.+.+..| .+.....+... .+ .+..++..|+..+|.. +
T Consensus 354 L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G-~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-----T 427 (573)
T COG4987 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG-SITLNGVEIASLDEQALRETISVLTQRVHLFSG-----T 427 (573)
T ss_pred hhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCC-eeeECCcChhhCChhhHHHHHhhhccchHHHHH-----H
Confidence 3344456779999999999999999999999999999888 55433222211 11 1223445566666654 3
Q ss_pred hhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHH
Q 019061 199 FLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (346)
Q Consensus 199 ~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl 278 (346)
..++...... ..+.+.+.++++... ...+-.. .++.+...+..-|..-+++.++|+
T Consensus 428 lr~NL~lA~~--~AsDEel~~aL~qvg----------L~~l~~~------------~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 428 LRDNLRLANP--DASDEELWAALQQVG----------LEKLLES------------APDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred HHHHHhhcCC--CCCHHHHHHHHHHcC----------HHHHHHh------------ChhhhhchhccCCCcCCchHHHHH
Confidence 3444433211 123344444433211 1111000 023444445444555577778888
Q ss_pred HHHHHHHHh
Q 019061 279 RNAKEEIKQ 287 (346)
Q Consensus 279 ~~~~~~i~~ 287 (346)
..++..+..
T Consensus 484 AlAR~LL~d 492 (573)
T COG4987 484 ALARALLHD 492 (573)
T ss_pred HHHHHHHcC
Confidence 888766654
No 404
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.47 E-value=9.4e-07 Score=92.47 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=47.0
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~ 190 (346)
.+..+.++...+|++++|+||||||||||++.|++.+++..| .+... .....+|++|...++
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G-~i~~~-------~~~~i~~v~Q~~~l~ 527 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGG-RLTKP-------AKGKLFYVPQRPYMT 527 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEeec-------CCCcEEEECCCCCCC
Confidence 455556677889999999999999999999999999988777 44321 123477888876443
No 405
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.47 E-value=7.6e-07 Score=79.04 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=46.2
Q ss_pred EEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHHHH
Q 019061 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVICYC 316 (346)
Q Consensus 247 ~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~~ 316 (346)
.++++.. +.+...+|+..|+..+.+.+.+|+.... .........+.+|.|+ ++++..+++..++.+
T Consensus 127 ~vi~V~a-~~e~~~~Rl~~R~~~s~e~~~~ri~~Q~---~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 127 RVLVVDA-PPETQLERLMARDGLSEEEAEAIIASQM---PREEKLARADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred eEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHHhC---CHHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 4444444 4788999999998888889999987432 2211223457888776 899988888887654
No 406
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.46 E-value=3.7e-07 Score=77.47 Aligned_cols=59 Identities=24% Similarity=0.257 Sum_probs=41.3
Q ss_pred hCCceEEEecHHHHHHH---Hc----CCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 019061 223 AGKRCILDIDVQGARSV---RA----SPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (346)
Q Consensus 223 ~~~~~iLD~~~~~~~~l---~~----~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~ 284 (346)
....++||+.|....+. .. ....+..++....+.+.+.+|+.. ++.+.+++|++.|++.
T Consensus 73 ~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~---d~~~~i~~Rl~~y~~~ 138 (151)
T PF00406_consen 73 CNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ---DNEEVIKKRLEEYREN 138 (151)
T ss_dssp TTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT---GSHHHHHHHHHHHHHH
T ss_pred ccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc---CCHHHHHHHHHHHHHH
Confidence 45789999988876655 33 344444444445557899999887 6789999999999865
No 407
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.45 E-value=1.6e-06 Score=81.55 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=44.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSV 189 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~ 189 (346)
+..+.++.+.+|++++|+||||||||||+++|++.+++..| .+.... .++|+++....
T Consensus 52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G-~I~i~g---------~i~yv~q~~~l 109 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG-KIKHSG---------RISFSSQFSWI 109 (282)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECC---------EEEEEeCcccc
Confidence 34445566779999999999999999999999999988888 443211 26677776543
No 408
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.45 E-value=5.3e-06 Score=78.31 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++++|++||||||+++.|...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHC
Confidence 3578999999999999999998876
No 409
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.45 E-value=9e-07 Score=100.17 Aligned_cols=176 Identities=14% Similarity=0.055 Sum_probs=101.4
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHHHHHHh
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIK 195 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~~~~~~ 195 (346)
+.++.+.++.+.+|+.++|+|+||||||||++.|.+.++ ..| .|..-..+ .....+...+|++|++.+|.
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G-~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~---- 1305 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEG-EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS---- 1305 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCc-EEEECCEEcccCCHHHHHhceEEEeCCCccCc----
Confidence 345566667788999999999999999999999999986 566 44321111 11222356889999887764
Q ss_pred ccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHH
Q 019061 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (346)
Q Consensus 196 ~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~ 275 (346)
|+..++....+. .+.+.+.++++.... ...+... ...++..+...|..-+.+.+
T Consensus 1306 -GTIR~NLdp~~~---~tdeei~~aL~~~~L---------~~~i~~l-------------p~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1306 -GTFRKNLDPYEQ---WSDEEIWKVAEEVGL---------KSVIEQF-------------PDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred -cCHHHHhCcccC---CCHHHHHHHHHHCCC---------HHHHHhC-------------ccccccccccCCCcCCHHHH
Confidence 366666643221 223444444433111 0001100 13455566666666789999
Q ss_pred HHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccc
Q 019061 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTY 332 (346)
Q Consensus 276 ~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~ 332 (346)
||+..+++.+...+ .-++|+--++-|. ++.+.+.+.|.... +.++++++.|-
T Consensus 1360 QrL~LARALLr~~~-ILlLDEaTS~lD~-~Te~~I~~~L~~~~---~~~TvI~IaHR 1411 (1490)
T TIGR01271 1360 QLMCLARSILSKAK-ILLLDEPSAHLDP-VTLQIIRKTLKQSF---SNCTVILSEHR 1411 (1490)
T ss_pred HHHHHHHHHhCCCC-EEEEeCCcccCCH-HHHHHHHHHHHHHc---CCCEEEEEecC
Confidence 99999998876421 1112222222233 22345666666543 23444365653
No 410
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.43 E-value=6.8e-07 Score=74.60 Aligned_cols=112 Identities=18% Similarity=0.274 Sum_probs=57.6
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchh---hhhhhhccccC
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL---EFASVHGNLYG 211 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~---e~~~~~~~~yg 211 (346)
+++++||+||||||+++.|..... . . +.+.+.+...+...... .........+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~-~-------------------~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---A-V-------------------VISQDEIRRRLAGEDPPSPSDYIEAEERAYQ 57 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---E-E-------------------EEEHHHHHHHHCCSSSGCCCCCHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---C-E-------------------EEeHHHHHHHHcccccccchhHHHHHHHHHH
Confidence 478999999999999999987653 1 1 11111111111100000 00011111122
Q ss_pred CcHHHHHHHHHhCCceEEEe---cHHHHHH---HHcCCCCeEEEEEcCCCHHHHHHHHHcCCCC
Q 019061 212 TSVEAVEAVADAGKRCILDI---DVQGARS---VRASPLDAIFIFICPPSMEELEERLRARGTE 269 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~---~~~~~~~---l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~ 269 (346)
...+.+...+..+..+++|. ....... +.........++...++.+++.+|+..|...
T Consensus 58 ~~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 58 ILNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp HHHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred HHHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 22344556667888899984 2222222 2223333444444455689999999998654
No 411
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=3.4e-06 Score=71.97 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=34.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+....++++.+|++++|+|+||+|||||+++|.+.+++..|
T Consensus 14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G 54 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG 54 (157)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 34444566779999999999999999999999999877666
No 412
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.42 E-value=5.4e-06 Score=72.47 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.|++++++|+|||||||+++.|.+.+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5889999999999999999999998654
No 413
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.42 E-value=4.9e-08 Score=85.35 Aligned_cols=30 Identities=37% Similarity=0.367 Sum_probs=26.5
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhcc
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
.+++..+|++++|+||||||||||++++.+
T Consensus 14 isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 446778999999999999999999999863
No 414
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.42 E-value=1.8e-07 Score=81.78 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=84.9
Q ss_pred HcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeec----CCccc-ccccCCeeEEeeChhHH
Q 019061 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT----TRAPR-AMEKDGVHYHFTERSVM 190 (346)
Q Consensus 116 ~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~t----tr~~~-~~~~~g~~y~f~s~~~~ 190 (346)
++|.-....+.++....|+.-+|+||||+||||++..|.++.+|..|...-+. ++.+. ...+.|++--||.+..|
T Consensus 14 sF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVf 93 (249)
T COG4674 14 SFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVF 93 (249)
T ss_pred EEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeeh
Confidence 34433333444566779999999999999999999999999999888444332 22211 22345777789998888
Q ss_pred HHHHhccchhhhhhhhcccc---------CC---cHHHHHHHHHhCCc-eEEEecHHHHHHHHcCCCCeEEEEEcCCCHH
Q 019061 191 EKAIKDGKFLEFASVHGNLY---------GT---SVEAVEAVADAGKR-CILDIDVQGARSVRASPLDAIFIFICPPSME 257 (346)
Q Consensus 191 ~~~~~~~~~~e~~~~~~~~y---------g~---~~~~i~~~~~~~~~-~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~ 257 (346)
+.+ ++.++.+...+.. .. ..+.+++.++.-.. ---+.....+..-+++...+-.++...|.+.
T Consensus 94 e~l----tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lL 169 (249)
T COG4674 94 ENL----TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLL 169 (249)
T ss_pred hhc----cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEE
Confidence 776 6666665433221 11 11223333321110 0000000011111344445556777777777
Q ss_pred HHHHHHHcCC
Q 019061 258 ELEERLRARG 267 (346)
Q Consensus 258 ~l~eRL~~R~ 267 (346)
.++|+..+.-
T Consensus 170 LlDEPvAGMT 179 (249)
T COG4674 170 LLDEPVAGMT 179 (249)
T ss_pred EecCccCCCc
Confidence 8888877664
No 415
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.41 E-value=1.8e-06 Score=97.83 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=51.7
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~ 200 (346)
.+..+.++.+.+|++++|+||+|||||||++.|.+..++..| .+... ..++|+++...++. ++..
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G-~i~~~---------g~iayv~Q~~~l~~-----~Ti~ 504 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG-KIKHS---------GRISFSPQTSWIMP-----GTIK 504 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEEC---------CEEEEEeCCCccCC-----ccHH
Confidence 345555667789999999999999999999999999998888 44321 13778888765543 2556
Q ss_pred hhhhh
Q 019061 201 EFASV 205 (346)
Q Consensus 201 e~~~~ 205 (346)
++..+
T Consensus 505 eNI~~ 509 (1490)
T TIGR01271 505 DNIIF 509 (1490)
T ss_pred HHHHh
Confidence 66544
No 416
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.40 E-value=1.9e-06 Score=76.43 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=36.2
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
+....++....|++.+|+||||+|||||++.|.+.+.|..| .+.
T Consensus 16 ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G-~v~ 59 (259)
T COG4559 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSG-EVT 59 (259)
T ss_pred eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCC-eEe
Confidence 33344455678999999999999999999999999998887 443
No 417
>PLN03140 ABC transporter G family member; Provisional
Probab=98.39 E-value=1.4e-06 Score=97.93 Aligned_cols=83 Identities=13% Similarity=0.002 Sum_probs=54.6
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC--CccceeeecCCcccc-cccCCeeEEeeChhHHHHHHhc
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKAIKD 196 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~--~~g~~i~~ttr~~~~-~~~~g~~y~f~s~~~~~~~~~~ 196 (346)
..+..+.++...+|++++|+||||||||||+++|++...+ ..| .+.....+... ......+|++|....++.+
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G-~I~inG~~~~~~~~~~~igyv~Q~d~~~~~l--- 968 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIRISGFPKKQETFARISGYCEQNDIHSPQV--- 968 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccc-eEEECCccCChHHhhhheEEEccccccCCCC---
Confidence 3456666677889999999999999999999999998642 345 44332222111 1123468888876555443
Q ss_pred cchhhhhhhhc
Q 019061 197 GKFLEFASVHG 207 (346)
Q Consensus 197 ~~~~e~~~~~~ 207 (346)
++.|+..+..
T Consensus 969 -TV~E~L~~~a 978 (1470)
T PLN03140 969 -TVRESLIYSA 978 (1470)
T ss_pred -cHHHHHHHHH
Confidence 5666665543
No 418
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.39 E-value=1.5e-06 Score=79.76 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=55.9
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC---CHHHHHHHHHHHHHHhhcccC
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND---KLEECYENLKVICYCLMQISD 322 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~---~le~~~~~l~~iI~~l~~~~~ 322 (346)
..++++.. +.+...+|+..|+..+++++.+|+.. |+........+|.|+.|+ ++++...++.+++..+....+
T Consensus 138 D~iv~V~a-~~e~ri~RL~~R~g~s~eea~~Ri~~---Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~~~~~ 213 (244)
T PTZ00451 138 SASVVVSC-SEERQIERLRKRNGFSKEEALQRIGS---QMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMSRQSN 213 (244)
T ss_pred CeEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHh---CCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 44455544 48899999999987788999999955 222222345578888887 899999999999888765556
Q ss_pred ceee
Q 019061 323 NLII 326 (346)
Q Consensus 323 ~~~~ 326 (346)
.++.
T Consensus 214 ~~~~ 217 (244)
T PTZ00451 214 KRLT 217 (244)
T ss_pred hHHH
Confidence 5554
No 419
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.37 E-value=2.1e-06 Score=76.69 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=48.4
Q ss_pred EEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC--CHHHHHHHHHHHHHHhhc
Q 019061 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND--KLEECYENLKVICYCLMQ 319 (346)
Q Consensus 247 ~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~--~le~~~~~l~~iI~~l~~ 319 (346)
.++++.. +.+...+|+..|+..+++...+|++. |+.........|.||.|+ ++++..+++.+++.++..
T Consensus 131 ~vi~V~a-~~e~ri~Rl~~Rd~~s~~~a~~ri~~---Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~~~ 201 (204)
T PRK14733 131 KVIVIKA-DLETRIRRLMERDGKNRQQAVAFINL---QISDKEREKIADFVIDNTELTDQELESKLITTINEITN 201 (204)
T ss_pred EEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHh---CCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHHHh
Confidence 3444444 47899999999987788999888853 333222334467888775 678888888888877643
No 420
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.35 E-value=4.3e-06 Score=74.84 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=26.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.+|.+++|+||||||||||++.|.+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47899999999999999999999988764
No 421
>PTZ00243 ABC transporter; Provisional
Probab=98.35 E-value=1.5e-06 Score=98.57 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=52.7
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccch
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF 199 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~ 199 (346)
..+..+.++...+|++++|+||||||||||++.|.+.+++..| .+.. ...++|++|...++. ++.
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G-~i~~---------~~~i~yv~Q~~~l~~-----~Tv 737 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEG-RVWA---------ERSIAYVPQQAWIMN-----ATV 737 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEE---------CCeEEEEeCCCccCC-----CcH
Confidence 3455556677889999999999999999999999999988888 4431 134788888765432 355
Q ss_pred hhhhhh
Q 019061 200 LEFASV 205 (346)
Q Consensus 200 ~e~~~~ 205 (346)
.++..+
T Consensus 738 ~enI~~ 743 (1560)
T PTZ00243 738 RGNILF 743 (1560)
T ss_pred HHHHHc
Confidence 666544
No 422
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.35 E-value=2.9e-08 Score=111.30 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=53.9
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc----CCCccceeeecCCccc---ccccCCeeEEeeChhHHHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF----PSMFGFSVSHTTRAPR---AMEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~----~~~~g~~i~~ttr~~~---~~~~~g~~y~f~s~~~~~~~ 193 (346)
.+..+.++...+|++++|+||||||||||+++|.+.. .+..| .+........ .......+|+++....++.+
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G-~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEG-VITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCcee-EEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 3455566677899999999999999999999999985 23556 4543222111 11123478888876555544
Q ss_pred Hhccchhhhhhhhc
Q 019061 194 IKDGKFLEFASVHG 207 (346)
Q Consensus 194 ~~~~~~~e~~~~~~ 207 (346)
++.|+..+..
T Consensus 154 ----TV~E~l~f~~ 163 (1394)
T TIGR00956 154 ----TVGETLDFAA 163 (1394)
T ss_pred ----CHHHHHHHHH
Confidence 5566655543
No 423
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.34 E-value=8.6e-07 Score=78.88 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=49.4
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHHHHhh
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVICYCLM 318 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~~l~ 318 (346)
..++++..| .+...+|+..|+..+.+.+.+|+.. |+........++.++.|+ ++++..+++..+++++.
T Consensus 123 D~vi~V~a~-~e~r~~RL~~R~g~s~e~a~~ri~~---Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 123 DATVTVDSD-PEESILRTISRDGMKKEDVLARIAS---QLPITEKLKRADYIVRNDGNREGLKEECKILYSTLL 192 (196)
T ss_pred CEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHH---cCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 445555554 7889999999987788999999865 222112234467888877 88888888888877664
No 424
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.31 E-value=1.5e-06 Score=77.41 Aligned_cols=176 Identities=11% Similarity=0.075 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccccccc--CCee--EEeeChh---HHHHHHhccchhhhhh
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK--DGVH--YHFTERS---VMEKAIKDGKFLEFAS 204 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~--~g~~--y~f~s~~---~~~~~~~~~~~~e~~~ 204 (346)
.+.++++.|+|||||||+++.|+..+.. .....+...+.... .+.+ .+.++.+ .+........+..|..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~----~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~ 77 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI----DIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD 77 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC----eEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence 3578999999999999999999987532 11111111111000 0000 0001110 1100000000111222
Q ss_pred hhccccCCcHHHHHHHHHhCCceEEEe---cHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCC----H-HHHHH
Q 019061 205 VHGNLYGTSVEAVEAVADAGKRCILDI---DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET----E-DQILK 276 (346)
Q Consensus 205 ~~~~~yg~~~~~i~~~~~~~~~~iLD~---~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~----~-e~i~~ 276 (346)
.....|....+.+...+..|..+++|+ .+........ .....+++..++.+.+.+|+..|+.+. + +.-.+
T Consensus 78 q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~--~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~ 155 (197)
T PRK12339 78 QARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRT--NNIRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAE 155 (197)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHh--cCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence 222223334455666778999999996 2222222111 224556666667889989998886322 1 11222
Q ss_pred HHHHHHHHHHhcc---CCCCceEEEcCCCHHHHHHHHHHHH
Q 019061 277 RLRNAKEEIKQGK---SSGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 277 Rl~~~~~~i~~~~---~~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
-+...+ .++.|. ....---++.|.+++++...+.+.+
T Consensus 156 ~~~~ir-~i~~~l~~~a~~~~i~~i~~~~~~~~~~~~~~~~ 195 (197)
T PRK12339 156 HLPEYR-TIMDYSIADARGYNIKVIDTDNYREARNPLLDPI 195 (197)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCeecCccHHHHHHHHHHHh
Confidence 222222 111110 0122346788889999888766544
No 425
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.31 E-value=3.1e-06 Score=96.13 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=50.7
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e 201 (346)
+..+.++...+|+.++++||||||||||++.|.+.+++..| .+... ..++|++|...++ .++..+
T Consensus 653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G-~i~~~---------g~i~yv~Q~~~l~-----~~Ti~e 717 (1522)
T TIGR00957 653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVHMK---------GSVAYVPQQAWIQ-----NDSLRE 717 (1522)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCc-EEEEC---------CEEEEEcCCcccc-----CCcHHH
Confidence 34445566789999999999999999999999999998888 44321 1367888875443 336666
Q ss_pred hhhh
Q 019061 202 FASV 205 (346)
Q Consensus 202 ~~~~ 205 (346)
+..+
T Consensus 718 NI~~ 721 (1522)
T TIGR00957 718 NILF 721 (1522)
T ss_pred Hhhc
Confidence 6554
No 426
>PRK08233 hypothetical protein; Provisional
Probab=98.31 E-value=2.2e-05 Score=68.13 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++.++++.|++||||||+++.|...++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999998764
No 427
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.30 E-value=2.3e-05 Score=67.15 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.4
Q ss_pred EEEEcCCCCChHHHHHhhccccC
Q 019061 136 VVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 136 ~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++++||+||||||+++.|...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999998753
No 428
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.29 E-value=2.3e-06 Score=74.46 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=25.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+|.+++|+|++||||||+++.|...+.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34788999999999999999999988764
No 429
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.29 E-value=4.9e-08 Score=86.93 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=26.1
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhccccCCC
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~ 160 (346)
+..+| +++|+||||||||||+++|.+..++.
T Consensus 19 ~~~~g-~~~i~G~nGsGKStll~al~~l~~~~ 49 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQ 49 (197)
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34567 99999999999999999998876543
No 430
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.27 E-value=4.4e-07 Score=75.31 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=43.9
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHH
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~ 191 (346)
+.+.+|++++|+|+||||||||+++|.+..++..| .+....... ........+|+++....+.
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G-~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 72 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSG-SILINGKDISDIDIEELRRRIGYVPQDPQLFP 72 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEE-EEEETTEEGTTSHHHHHHHTEEEEESSHCHHT
T ss_pred EEEcCCCEEEEEccCCCccccceeeeccccccccc-cccccccccccccccccccccccccccccccc
Confidence 44668999999999999999999999999988777 443221111 1122345777777755444
No 431
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.27 E-value=1.7e-07 Score=95.01 Aligned_cols=51 Identities=24% Similarity=0.353 Sum_probs=41.8
Q ss_pred HHHHHcCC-eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 112 EQKKVVGA-EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 112 ~~~~~~g~-~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
++.+.|+. .++....++.+.+|..++|+||||+|||||++.|.+...+..|
T Consensus 326 ~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred ccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 44566644 4666667777889999999999999999999999998877777
No 432
>PRK03839 putative kinase; Provisional
Probab=98.26 E-value=2.2e-05 Score=68.47 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=51.6
Q ss_pred CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHH-HHHH--HHHhccCCCCceEEEcC
Q 019061 224 GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR-NAKE--EIKQGKSSGIFDHILYN 300 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~-~~~~--~i~~~~~~~~~~~Vi~n 300 (346)
+..+++|+..... .....++++. .+.+.+.+|+..|+.. ...+..++. .+.. ..+.+.....+..|..+
T Consensus 65 ~~~vIidG~~~~l------~~~~~vi~L~-~~~~~~~~Rl~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~ 136 (180)
T PRK03839 65 EKNVVLDGHLSHL------LPVDYVIVLR-AHPKIIKERLKERGYS-KKKILENVEAELVDVCLCEALEEKEKVIEVDTT 136 (180)
T ss_pred CCCEEEEeccccc------cCCCEEEEEE-CCHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 4568888854321 1123345544 4478899999888632 222222221 1111 01222222334455554
Q ss_pred -CCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 301 -DKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 301 -~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
.++++++.++.+.+..-...+.+ .+-|+.+-+
T Consensus 137 ~~s~eev~~~I~~~l~~~~~~~~~--~~~~~~~~~ 169 (180)
T PRK03839 137 GKTPEEVVEEILELIKSGKKRKVG--IVDWSEVYD 169 (180)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCC--eecchhhcc
Confidence 48999999988888765433322 335664433
No 433
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.26 E-value=1.7e-07 Score=83.21 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=34.5
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccce
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFS 164 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~ 164 (346)
.++++.+|.++.++|.||+||||++|.|.+...+..|+.
T Consensus 25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I 63 (263)
T COG1101 25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI 63 (263)
T ss_pred CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE
Confidence 345677999999999999999999999999999988843
No 434
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.25 E-value=8.3e-05 Score=63.87 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+++..++|+|++||||||+++.|...+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999875
No 435
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.24 E-value=2.8e-06 Score=75.84 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=48.1
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHHHHhh
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVICYCLM 318 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~~l~ 318 (346)
..++++..| .++..+|+..|+.-+.+.+.+|+........ .....+.+|.|+ ++++..+++..++..+.
T Consensus 127 D~vi~V~a~-~e~ri~Rl~~R~g~s~e~~~~ri~~Q~~~~~---k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~ 196 (200)
T PRK14734 127 DLVVVVDVD-VEERVRRLVEKRGLDEDDARRRIAAQIPDDV---RLKAADIVVDNNGTREQLLAQVDGLIAEIL 196 (200)
T ss_pred CeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCCHHH---HHHhCCEEEECcCCHHHHHHHHHHHHHHHH
Confidence 345555554 7888999998876778899899865432211 123356777776 89999899988887664
No 436
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.24 E-value=3.5e-07 Score=78.37 Aligned_cols=42 Identities=36% Similarity=0.460 Sum_probs=35.8
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccce-eee
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFS-VSH 167 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~-i~~ 167 (346)
.+++...|++++|-||||+||||++++|.+.+.+..|.. +.|
T Consensus 30 vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H 72 (235)
T COG4778 30 VSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRH 72 (235)
T ss_pred eeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEe
Confidence 446677999999999999999999999999999888843 345
No 437
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.23 E-value=4e-06 Score=80.77 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=38.2
Q ss_pred cCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 117 ~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
..+-....+.++....|++++|+|.|||||||+..+|..++++. | .|.
T Consensus 297 ~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G-~I~ 344 (534)
T COG4172 297 VDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-G-EIR 344 (534)
T ss_pred chheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-c-eEE
Confidence 33444455566777899999999999999999999999998875 6 443
No 438
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=98.22 E-value=1.7e-06 Score=63.22 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=28.3
Q ss_pred CCCceeccEEEEEe-cCCeeEEEEEeeCCCceEEc
Q 019061 30 ETTTVIGDKTYVIA-GSDESIGVKIYDRSTGNWLI 63 (346)
Q Consensus 30 ~~~~~vGD~v~~~~-~~~~~~i~~i~~R~~~~l~r 63 (346)
...|+|||||.++. +++.++|++|+|| +|.|.|
T Consensus 35 ~~~~~VGD~V~~~~~~~~~~~I~~vl~R-~s~l~R 68 (68)
T cd04466 35 KNPPAVGDRVEFEPEDDGEGVIEEILPR-KNLLIR 68 (68)
T ss_pred CCCCCCCcEEEEEECCCCcEEEEEEecc-ceEEEC
Confidence 35699999999986 3457899999999 899987
No 439
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.21 E-value=4.7e-07 Score=78.48 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=34.9
Q ss_pred CccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeee
Q 019061 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH 167 (346)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ 167 (346)
++...+|.+++++|.||||||||+++|++..+|+.| .+..
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG-~il~ 72 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG-EILI 72 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCc-eEEE
Confidence 355668999999999999999999999999999888 5543
No 440
>PRK13975 thymidylate kinase; Provisional
Probab=98.20 E-value=0.00012 Score=64.45 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+++++|.|+.||||||+++.|...+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999998875
No 441
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.19 E-value=2.9e-05 Score=71.46 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=74.5
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCCcH
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSV 214 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~~~ 214 (346)
.++|+|++||||||+++.|...+.. .|..+.+. +.+.+...... +.+ .+.........
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~-~~~~v~~i-----------------~~D~lr~~~~~--~~~--~~e~~~~~~~~ 58 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE-KNIDVIIL-----------------GTDLIRESFPV--WKE--KYEEFIRDSTL 58 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-cCCceEEE-----------------ccHHHHHHhHH--hhH--HhHHHHHHHHH
Confidence 4789999999999999999876531 12111111 11111110000 000 00000011112
Q ss_pred HHHHHHHHhCCceEEEecH--HHH-HHH---HcCCCCeEEEEEcCCCHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHh
Q 019061 215 EAVEAVADAGKRCILDIDV--QGA-RSV---RASPLDAIFIFICPPSMEELEERLRARGTET-EDQILKRLRNAKEEIKQ 287 (346)
Q Consensus 215 ~~i~~~~~~~~~~iLD~~~--~~~-~~l---~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~-~e~i~~Rl~~~~~~i~~ 287 (346)
..+...+..+..+++|... .+. ..+ .+.......++...++.+.+.+|...|+... .+.+.+....+......
T Consensus 59 ~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~ 138 (249)
T TIGR03574 59 YLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTK 138 (249)
T ss_pred HHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCC
Confidence 3355556677788888632 111 112 2222333444444455889999988887543 33444433333211111
Q ss_pred ccCCCCceEEEcC-C--CHHHHHHHHHHHHH
Q 019061 288 GKSSGIFDHILYN-D--KLEECYENLKVICY 315 (346)
Q Consensus 288 ~~~~~~~~~Vi~n-~--~le~~~~~l~~iI~ 315 (346)
+ .....+.++.. . +.+++++.+...+.
T Consensus 139 ~-~wd~~~~~vd~~~~~~~~ei~~~i~~~~~ 168 (249)
T TIGR03574 139 Y-SWDLPDLTIDTTKKIDYNEILEEILEISE 168 (249)
T ss_pred C-CccCceEEecCCCCCCHHHHHHHHHHHhh
Confidence 1 01123444433 3 55677777666543
No 442
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.18 E-value=5.8e-05 Score=64.82 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=49.4
Q ss_pred hCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHhcc-----CCCC
Q 019061 223 AGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE----IKQGK-----SSGI 293 (346)
Q Consensus 223 ~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~----i~~~~-----~~~~ 293 (346)
.+..+++++..... +.... ....|++..| .+...+|+..|+..+.+..++++..-... ...+. ....
T Consensus 73 ~~~~~Vi~g~~~~~--~~~~~-~d~~v~v~a~-~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 148 (171)
T TIGR02173 73 KEKNVVLESRLAGW--IVREY-ADVKIWLKAP-LEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSI 148 (171)
T ss_pred cCCCEEEEecccce--eecCC-cCEEEEEECC-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 45577878643221 11111 2255666665 78888999998776667766665543211 11111 1355
Q ss_pred ceEEEcCC--CHHHHHHHHHHHH
Q 019061 294 FDHILYND--KLEECYENLKVIC 314 (346)
Q Consensus 294 ~~~Vi~n~--~le~~~~~l~~iI 314 (346)
++.++.+. ++++ .+.+..++
T Consensus 149 ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 149 YDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred ccEEEECCCCCHHH-HHHHHHHh
Confidence 78888776 7777 66665543
No 443
>PLN02422 dephospho-CoA kinase
Probab=98.17 E-value=6.8e-06 Score=74.83 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=49.8
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHHHHhh
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVICYCLM 318 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~~l~ 318 (346)
..++++.. +.+...+|+..|+..+.+++.+|++. |+.........+.+|.|+ ++++..+++.++++.+.
T Consensus 127 D~vI~V~a-~~e~ri~RL~~R~g~s~eea~~Ri~~---Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 127 KPVVVVWV-DPETQLERLMARDGLSEEQARNRINA---QMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred CEEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHH---cCChhHHHhhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 34455554 47899999999987888999899843 322222234567888887 89998899998888774
No 444
>PRK13946 shikimate kinase; Provisional
Probab=98.16 E-value=0.00013 Score=64.08 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..+.++|+|++||||||+.+.|...+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999875
No 445
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.4e-06 Score=82.60 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=76.2
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc----cccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+....++.+..|+.++++||||+||||+++.|...+.+..| .|..-....+. .-+..++.++|+..+|...
T Consensus 278 iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG-~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDt---- 352 (497)
T COG5265 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG-SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDT---- 352 (497)
T ss_pred hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc-eEEEcchhHHHhHHHHHHHHhCcCcccceehhhh----
Confidence 33444456779999999999999999999999999988888 44321111111 0112234445544444321
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
. +...-||.+..+.++.....+.. +...+-.. = ++.++.++..||---+.+.+||
T Consensus 353 -i-----~yni~ygr~~at~eev~aaa~~a-------qi~~fi~~----------l--P~gy~t~VgerglklSggekqr 407 (497)
T COG5265 353 -I-----AYNIKYGRPDATAEEVGAAAEAA-------QIHDFIQS----------L--PEGYDTGVGERGLKLSGGEKQR 407 (497)
T ss_pred -H-----HHHHhccCccccHHHHHHHHHHh-------hhhHHHHh----------C--chhhhcccchheeeccCchHHH
Confidence 1 11222555543332222111100 00000000 0 3566777777777677889999
Q ss_pred HHHHHHHHHh
Q 019061 278 LRNAKEEIKQ 287 (346)
Q Consensus 278 l~~~~~~i~~ 287 (346)
+..++..+..
T Consensus 408 vaiar~ilk~ 417 (497)
T COG5265 408 VAIARTILKN 417 (497)
T ss_pred HHHHHHHhcC
Confidence 9999877764
No 446
>PRK04182 cytidylate kinase; Provisional
Probab=98.15 E-value=7.7e-05 Score=64.51 Aligned_cols=92 Identities=16% Similarity=0.246 Sum_probs=49.8
Q ss_pred hCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HH-hc----cCCCC
Q 019061 223 AGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE----IK-QG----KSSGI 293 (346)
Q Consensus 223 ~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~----i~-~~----~~~~~ 293 (346)
.+..+++++..... +... .....|++..| .+.+.+|+..|+..+.....+.+...... +. .| .....
T Consensus 73 ~~~~~Vi~g~~~~~--~~~~-~~~~~V~l~a~-~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 148 (180)
T PRK04182 73 KEDNVVLEGRLAGW--MAKD-YADLKIWLKAP-LEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSI 148 (180)
T ss_pred cCCCEEEEEeecce--EecC-CCCEEEEEECC-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 44567777532111 1111 13355666554 78899999888654444333333222211 11 11 01245
Q ss_pred ceEEEcCC--CHHHHHHHHHHHHHHhh
Q 019061 294 FDHILYND--KLEECYENLKVICYCLM 318 (346)
Q Consensus 294 ~~~Vi~n~--~le~~~~~l~~iI~~l~ 318 (346)
++.++.+. +++++.+.+.+.+....
T Consensus 149 ~d~~idt~~~~~~~~~~~I~~~~~~~~ 175 (180)
T PRK04182 149 YDLVINTSRWDPEGVFDIILTAIDKLL 175 (180)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 67777664 88999888888776654
No 447
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.15 E-value=2.9e-05 Score=79.15 Aligned_cols=123 Identities=19% Similarity=0.131 Sum_probs=70.9
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e 201 (346)
+....++....|+-+.+.|+||||||||+++|++.-|--.|..... .. ...-|.+|.+. +..|++.+
T Consensus 408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--~~------~~~lflpQ~PY-----~p~GtLre 474 (604)
T COG4178 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--AD------SALLFLPQRPY-----LPQGTLRE 474 (604)
T ss_pred eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--CC------CceEEecCCCC-----CCCccHHH
Confidence 3333445667999999999999999999999999988666622111 00 11223444331 33446666
Q ss_pred hhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHc---CCCCCHHHHHHHH
Q 019061 202 FASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA---RGTETEDQILKRL 278 (346)
Q Consensus 202 ~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~---R~~~~~e~i~~Rl 278 (346)
-..|....-..+.+++.+.+.... +..+.+|+.+ .+...+.+.+||+
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vg------------------------------L~~L~~rl~~~~~W~~vLS~GEqQRl 524 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVG------------------------------LGDLAERLDEEDRWDRVLSGGEQQRL 524 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcC------------------------------cHHHHHHHhccCcHhhhcChhHHHHH
Confidence 655554432123333333332211 2344444433 2344577889999
Q ss_pred HHHHHHHHh
Q 019061 279 RNAKEEIKQ 287 (346)
Q Consensus 279 ~~~~~~i~~ 287 (346)
.-++-.+.+
T Consensus 525 afARilL~k 533 (604)
T COG4178 525 AFARLLLHK 533 (604)
T ss_pred HHHHHHHcC
Confidence 998866544
No 448
>PLN02924 thymidylate kinase
Probab=98.13 E-value=0.00012 Score=66.39 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=88.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccc-h---hhhhhh
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK-F---LEFASV 205 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~-~---~e~~~~ 205 (346)
..+|.+++|-|..||||||+++.|...+.. .|..+.. ++.+.....- .......+.... + .+..-|
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~-~g~~v~~-~~ep~~~~~~--------g~~ir~~l~~~~~~~~~~~~llf 82 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKG-LGVAAEL-WRFPDRTTSV--------GQMISAYLSNKSQLDDRAIHLLF 82 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCcee-eeCCCCCChH--------HHHHHHHHhCCCCCCHHHHHHHH
Confidence 357899999999999999999999988763 3433322 2211100000 011111111100 0 000111
Q ss_pred hccccCCcHHHHHHHHHhCCceEEEecHH--------------HHHHHHcCCCCe-EEEEEcCCCHHHHHHHHHcCCCC-
Q 019061 206 HGNLYGTSVEAVEAVADAGKRCILDIDVQ--------------GARSVRASPLDA-IFIFICPPSMEELEERLRARGTE- 269 (346)
Q Consensus 206 ~~~~yg~~~~~i~~~~~~~~~~iLD~~~~--------------~~~~l~~~~~~~-~~ill~~p~~~~l~eRL~~R~~~- 269 (346)
...-+.. ...+..+++.|..+++|=... .+..+....+.+ +++++.. +.++..+|...+++.
T Consensus 83 ~adR~~~-~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~-~~~~a~~R~~~~~~~~ 160 (220)
T PLN02924 83 SANRWEK-RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDI-SPEEAAERGGYGGERY 160 (220)
T ss_pred HHHHHHH-HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeC-CHHHHHHHhccCcccc
Confidence 1111111 234666667888898883111 122222223334 3444444 467777775433221
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 270 ~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
.....++|+.....++.. ..+..|.++.+++++.+++.+++...
T Consensus 161 E~~~~~~rv~~~Y~~la~----~~~~vIDa~~sieeV~~~I~~~I~~~ 204 (220)
T PLN02924 161 EKLEFQKKVAKRFQTLRD----SSWKIIDASQSIEEVEKKIREVVLDT 204 (220)
T ss_pred ccHHHHHHHHHHHHHHhh----cCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 123555666555544432 23455667779999999998888764
No 449
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.11 E-value=8.8e-05 Score=63.93 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=38.7
Q ss_pred CCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC----CceEEEcCCCHHHHHHHHHHHHH
Q 019061 243 PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG----IFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 243 ~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~----~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
....+.++.+.++.+++.+|+..|..+- .....+..|+..+++.. ....+....+++++..++...+.
T Consensus 88 ~~~~~~~v~l~a~~~~l~~Rl~~R~~~~-----a~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~~~~~~~~~~~~~~ 159 (163)
T PRK11545 88 GNPNLSFIYLKGDFDVIESRLKARKGHF-----FKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK 159 (163)
T ss_pred cCCCEEEEEEECCHHHHHHHHHhccCCC-----CCHHHHHHHHHHcCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 3445555566666899999999996421 24444555554444321 12234444466777666665554
No 450
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.10 E-value=1.1e-05 Score=71.07 Aligned_cols=60 Identities=25% Similarity=0.251 Sum_probs=41.0
Q ss_pred EEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHH
Q 019061 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENL 310 (346)
Q Consensus 247 ~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l 310 (346)
.++++.. +.+...+|+..|+..+.+.+.+|+.... ..+.....++.+|.|+ ++++...++
T Consensus 126 ~vv~V~~-~~~~~~~Rl~~R~~~s~~~~~~r~~~q~---~~~~~~~~ad~vI~N~~~~e~l~~~~ 186 (188)
T TIGR00152 126 RVIVVDV-SPQLQLERLMQRDNLTEEEVQKRLASQM---DIEERLARADDVIDNSATLADLVKQL 186 (188)
T ss_pred EEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhcC---CHHHHHHhCCEEEECCCCHHHHHHHH
Confidence 3444444 5899999999998778899999986642 2122234467888777 777766554
No 451
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.09 E-value=0.00011 Score=65.95 Aligned_cols=173 Identities=23% Similarity=0.245 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhcc--ch---hhhhhhh
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDG--KF---LEFASVH 206 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~--~~---~e~~~~~ 206 (346)
+|..++|=|.-||||||+++.|...+.. .|..+ .+||.+..... .+........+ .+ .+..-|.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~-~g~~v-~~trEP~~~~i---------ge~iR~~ll~~~~~~~~~~e~lLfa 70 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEE-RGIKV-VLTREPGGTPI---------GEKIRELLLNGEEKLSPKAEALLFA 70 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH-cCCeE-EEEeCCCCChH---------HHHHHHHHcCCccCCCHHHHHHHHH
Confidence 5889999999999999999999998764 34332 23333322110 11112211111 00 0111111
Q ss_pred ccccCCcHHHHHHHHHhCCceEEEe---------------cHHHHHHHHcCCC---Ce-EEEEEcCCCHHHHHHHHHcCC
Q 019061 207 GNLYGTSVEAVEAVADAGKRCILDI---------------DVQGARSVRASPL---DA-IFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 207 ~~~yg~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l~~~~~---~~-~~ill~~p~~~~l~eRL~~R~ 267 (346)
..-+......+...+..+..++.|- +......+..... .+ .++|+..| .++..+|+.+|+
T Consensus 71 adR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~ 149 (208)
T COG0125 71 ADRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRG 149 (208)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCC-HHHHHHHHHhcC
Confidence 1111112234555556778888882 2223333322222 33 34444444 688888998886
Q ss_pred CC-C----HH-HHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 268 TE-T----ED-QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 268 ~~-~----~e-~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
.. + .+ .+.+++.....++.... +.-+..|.++.+++++.+.+..++...
T Consensus 150 ~~~~r~E~~~~~f~~kvr~~Y~~la~~~-~~r~~vIda~~~~e~v~~~i~~~l~~~ 204 (208)
T COG0125 150 ELRDRFEKEDDEFLEKVREGYLELAAKF-PERIIVIDASRPLEEVHEEILKILKER 204 (208)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCCHHHHHHHHHHHHHHh
Confidence 43 2 11 23555555444444322 224667888889999999888877654
No 452
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.08 E-value=1.3e-05 Score=70.52 Aligned_cols=85 Identities=21% Similarity=0.165 Sum_probs=53.0
Q ss_pred cCCCCeeEEEeCCCh-------HHHHHHH-----HHcCC---eEEEeccC-cc------------CCCCCeEEEEcCCCC
Q 019061 93 GSSSDDCLWFLEVDT-------PYVREQK-----KVVGA---EVVAWSKG-VI------------GNVEKPVVITGPSGV 144 (346)
Q Consensus 93 ~~~~~~~i~~~k~D~-------~~~~~~~-----~~~g~---~v~~~~~~-~~------------~~~g~~~~l~GpsG~ 144 (346)
..+.+.++++||+|. +..+.+. +..++ .++.+|+. .. ...+..++|+|.+|+
T Consensus 59 ~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nv 138 (190)
T cd01855 59 GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNV 138 (190)
T ss_pred cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCC
Confidence 357788999999993 1122222 22332 56777754 11 124578999999999
Q ss_pred ChHHHHHhhccccCCCc-------cceeeecCCccccccc
Q 019061 145 GKGTLISMLMKEFPSMF-------GFSVSHTTRAPRAMEK 177 (346)
Q Consensus 145 GKsTl~~~L~~~~~~~~-------g~~i~~ttr~~~~~~~ 177 (346)
|||||+|.|.+...... ....++||+.......
T Consensus 139 GKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~ 178 (190)
T cd01855 139 GKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL 178 (190)
T ss_pred CHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec
Confidence 99999999988542111 1133467776655444
No 453
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.07 E-value=0.00029 Score=61.22 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.+.++|+|++||||||+++.|...+
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHc
Confidence 35679999999999999999999875
No 454
>PRK13947 shikimate kinase; Provisional
Probab=98.06 E-value=8.5e-05 Score=64.02 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred eEEEEcCCCCChHHHHHhhccccC
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++|+|++||||||+.+.|+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 455
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.05 E-value=1.6e-06 Score=90.34 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=42.7
Q ss_pred HHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 113 ~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+.+.+|...++.+.++.+.+|++++|+||||||||||+++|++..++..|
T Consensus 9 ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G 58 (635)
T PRK11147 9 AWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDG 58 (635)
T ss_pred EEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe
Confidence 34556666667777788889999999999999999999999999888888
No 456
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.05 E-value=0.00026 Score=67.49 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=25.2
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.++..++|+|++||||||+.+.|...+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999998865
No 457
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.04 E-value=0.00012 Score=64.59 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+|.+++|.|+.||||||+++.|...+.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988764
No 458
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.03 E-value=5.3e-05 Score=67.76 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++.+++|.|+||||||||++.|.+.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999987
No 459
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.02 E-value=2.2e-05 Score=70.04 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=46.1
Q ss_pred EEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHHHHhh
Q 019061 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVICYCLM 318 (346)
Q Consensus 249 ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~~l~ 318 (346)
+++...+.+...+|+..|+..+.+....|+..-....+ .....+.|+.|+ +++...+++..++..+.
T Consensus 127 Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~Q~~~~e---k~~~ad~vi~n~~~i~~l~~~i~~~~~~~~ 194 (201)
T COG0237 127 VIVVYAPPEIRLERLMKRDGLDEEDAEARLASQRDLEE---KLALADVVIDNDGSIENLLEQIEKLLKELL 194 (201)
T ss_pred EEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcCCHHH---HHhhcCChhhcCCCHHHHHHHHHHHHHHHH
Confidence 33333447888999999998888888888755332222 234457777766 88888888888877664
No 460
>PRK13976 thymidylate kinase; Provisional
Probab=98.02 E-value=0.00018 Score=64.67 Aligned_cols=173 Identities=17% Similarity=0.148 Sum_probs=85.6
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCCcc-ceeeecCCcccccccCCeeEEeeChhHHHHHHhc----cchhhhhhhhcc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSMFG-FSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKD----GKFLEFASVHGN 208 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~~g-~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~----~~~~e~~~~~~~ 208 (346)
+.++|-|.-||||||+++.|...+....| ..+ ++|+.+..... .+........ +...+..-+...
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v-~~~~eP~~~~~---------g~~ir~~l~~~~~~~~~~~~llf~a~ 70 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV-VLTREPGGTSF---------NELVRGLLLSLKNLDKISELLLFIAM 70 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce-EEeeCCCCCHH---------HHHHHHHHcCCcCCCHHHHHHHHHHH
Confidence 36899999999999999999988764323 122 23332211000 0111111110 000111111111
Q ss_pred ccCCcHHHHHHHHHhCCceEEEe---------------cHHHHHHHHc--CCCC-eEEEEEcCCCHHHHHHHHHcCCCCC
Q 019061 209 LYGTSVEAVEAVADAGKRCILDI---------------DVQGARSVRA--SPLD-AIFIFICPPSMEELEERLRARGTET 270 (346)
Q Consensus 209 ~yg~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l~~--~~~~-~~~ill~~p~~~~l~eRL~~R~~~~ 270 (346)
-+....+.+...++.|..++.|= +.+.+..+.. .... .+++++..| .+...+|+..+..+.
T Consensus 71 R~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~-~e~a~~Ri~~~~~e~ 149 (209)
T PRK13976 71 RREHFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDID-IELSLSRADKNGYEF 149 (209)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHhcccchhc
Confidence 11111223455556788888871 2222333322 1122 344554444 678888886554331
Q ss_pred -HHHHHHHHHHHHHHHHhccCCCCceEEEcC---CC---HHHHHHHHHHHHHHhh
Q 019061 271 -EDQILKRLRNAKEEIKQGKSSGIFDHILYN---DK---LEECYENLKVICYCLM 318 (346)
Q Consensus 271 -~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n---~~---le~~~~~l~~iI~~l~ 318 (346)
.....+++.....++... ....+..+.++ .+ ++++.+++.+++..+.
T Consensus 150 ~~~~~l~~v~~~Y~~l~~~-~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~ 203 (209)
T PRK13976 150 MDLEFYDKVRKGFREIVIK-NPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT 203 (209)
T ss_pred ccHHHHHHHHHHHHHHHHh-CCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence 234555665554444321 12335566663 34 8899898888887664
No 461
>PRK13949 shikimate kinase; Provisional
Probab=98.01 E-value=0.00013 Score=63.36 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCChHHHHHhhccccC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+.++|+|++||||||+.+.|+..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998753
No 462
>PRK07933 thymidylate kinase; Validated
Probab=98.01 E-value=0.00035 Score=62.97 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCCccceeeec
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT 168 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~t 168 (346)
+.++|-|..||||||+++.|...+.. .|..+..|
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~-~g~~v~~~ 34 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEA-RGRSVATL 34 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 36899999999999999999998763 35444433
No 463
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.01 E-value=5.5e-05 Score=67.22 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++.+++|+|+|||||||+++.|.+.+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999998764
No 464
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.00 E-value=8.7e-05 Score=63.91 Aligned_cols=84 Identities=23% Similarity=0.233 Sum_probs=44.9
Q ss_pred CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHH-----HHHH-HHhccCCCCceEE
Q 019061 224 GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN-----AKEE-IKQGKSSGIFDHI 297 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~-----~~~~-i~~~~~~~~~~~V 297 (346)
....++|.+...+-. ..+.++++=+ +...|.+||.+||.. ++.+.+-+.. ...+ .+.+ ...+..-
T Consensus 67 ~~~~Ivd~H~~hl~~----~~dlVvVLR~--~p~~L~~RLk~RGy~-~eKI~ENveAEi~~vi~~EA~E~~--~~v~evd 137 (180)
T COG1936 67 EGSGIVDSHLSHLLP----DCDLVVVLRA--DPEVLYERLKGRGYS-EEKILENVEAEILDVILIEAVERF--EAVIEVD 137 (180)
T ss_pred cCCeEeechhhhcCC----CCCEEEEEcC--CHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 345666655443311 1223333333 358999999999853 4444443322 2211 3332 1222222
Q ss_pred EcCCCHHHHHHHHHHHHHH
Q 019061 298 LYNDKLEECYENLKVICYC 316 (346)
Q Consensus 298 i~n~~le~~~~~l~~iI~~ 316 (346)
..+.+++++.+.+..++..
T Consensus 138 tt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 138 TTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred CCCCCHHHHHHHHHHHHcc
Confidence 2345999999988888874
No 465
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.99 E-value=6.5e-05 Score=65.46 Aligned_cols=158 Identities=23% Similarity=0.318 Sum_probs=71.9
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCC-ccceee---ecCCcccccccCCeeEEeeCh-hHHHHHHhccchhhhhhhhc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSM-FGFSVS---HTTRAPRAMEKDGVHYHFTER-SVMEKAIKDGKFLEFASVHG 207 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~-~g~~i~---~ttr~~~~~~~~g~~y~f~s~-~~~~~~~~~~~~~e~~~~~~ 207 (346)
|++++|-|+|-|||||+++.|...++.. ....+- .+..+.... .+.++.+... +.. .....
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~--~~~g~~~~~~~~~~------------~~~~~ 66 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYR--PGDGLEPAGDRPDG------------GPLFR 66 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGT--STTSEEEETTSEEE-------------HHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCccccc--CCccccccccCCch------------hHHHH
Confidence 6899999999999999999999876531 110100 000000000 1111111100 000 00001
Q ss_pred cccCCcHHHHHHHHHhCCceEEEe---cHHH-HHHHHc-C-CCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 019061 208 NLYGTSVEAVEAVADAGKRCILDI---DVQG-ARSVRA-S-PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (346)
Q Consensus 208 ~~yg~~~~~i~~~~~~~~~~iLD~---~~~~-~~~l~~-~-~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~ 281 (346)
..|......+....+.|..+|+|. ++.. ...+++ . ....+.|-+..| .+++++|-..|++......
T Consensus 67 ~~~~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~RE~~RgDR~~G~a------- 138 (174)
T PF07931_consen 67 RLYAAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILERRERARGDRPIGLA------- 138 (174)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHHHHHHHTSSSTTHH-------
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHHHHHhcCCcchHHH-------
Confidence 111112345667778999999993 3332 222322 1 233444444444 7899999999987544311
Q ss_pred HHHHHhccCCCCceEEEcCC--CHHHHHHHHHH
Q 019061 282 KEEIKQGKSSGIFDHILYND--KLEECYENLKV 312 (346)
Q Consensus 282 ~~~i~~~~~~~~~~~Vi~n~--~le~~~~~l~~ 312 (346)
..+...-.....+|..+.+. +++++.+.|.+
T Consensus 139 ~~q~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~ 171 (174)
T PF07931_consen 139 AWQAEHVHEGGRYDLEVDTSATSPEECAREILA 171 (174)
T ss_dssp HHHTTGGGTT---SEEEETTSS-HHHHHHHHHT
T ss_pred HHHHhhcccCCCCCEEEECCCCCHHHHHHHHHH
Confidence 11221111223355555443 77787776554
No 466
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.98 E-value=0.00017 Score=62.36 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.+.++|+|+.||||||+-+.|+..+..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 357899999999999999999987754
No 467
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=97.97 E-value=7.9e-05 Score=74.78 Aligned_cols=43 Identities=33% Similarity=0.392 Sum_probs=35.1
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeec
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT 168 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~t 168 (346)
.++...+|+.+.++||||||||+|++.|.++-+...|....++
T Consensus 454 Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~ 496 (659)
T KOG0060|consen 454 LSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPT 496 (659)
T ss_pred eeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecc
Confidence 4455679999999999999999999999999887677433443
No 468
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.97 E-value=5e-05 Score=65.90 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+|++++|+|++||||||+++.|...+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999998764
No 469
>PRK12338 hypothetical protein; Provisional
Probab=97.97 E-value=0.00014 Score=69.04 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+.++++.|+|||||||+++.|+..+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 346889999999999999999998864
No 470
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.93 E-value=0.00029 Score=60.35 Aligned_cols=157 Identities=26% Similarity=0.316 Sum_probs=80.8
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCCc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTS 213 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~~ 213 (346)
++++++|-+|+||||+++...+.+ .... .+.+ .+++-.........++. +.+.+.+
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l-~~~~-ivNy-------------------G~~Mle~A~k~glve~r---D~~Rklp 60 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKEL-VKHK-IVNY-------------------GDLMLEIAKKKGLVEHR---DEMRKLP 60 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHH-hhce-eeeH-------------------hHHHHHHHHHhCCcccH---HHHhcCC
Confidence 789999999999999999988765 0000 0100 11111111111111111 1111222
Q ss_pred H--------HHHHHHHHhCCceEEEe-----cHHHHH------HHHcCCCCeEEEEEcCCCHHHHHHHHHc----CCCCC
Q 019061 214 V--------EAVEAVADAGKRCILDI-----DVQGAR------SVRASPLDAIFIFICPPSMEELEERLRA----RGTET 270 (346)
Q Consensus 214 ~--------~~i~~~~~~~~~~iLD~-----~~~~~~------~l~~~~~~~~~ill~~p~~~~l~eRL~~----R~~~~ 270 (346)
. ..++.+.+.....++|. .|.|+. -+....++...++..+| .+++..|++. |+.++
T Consensus 61 ~e~Q~~lq~~Aa~rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp-~~Il~RR~~D~~r~Rd~es 139 (189)
T COG2019 61 LENQRELQAEAAKRIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADP-EEILERRLRDSRRDRDVES 139 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCH-HHHHHHHhccccccccccc
Confidence 2 22333334444477774 222221 12334445555555554 5667777654 45667
Q ss_pred HHHHHHHHHHHHHH-HHhccCCCCceEEEcCC--CHHHHHHHHHHHHH
Q 019061 271 EDQILKRLRNAKEE-IKQGKSSGIFDHILYND--KLEECYENLKVICY 315 (346)
Q Consensus 271 ~e~i~~Rl~~~~~~-i~~~~~~~~~~~Vi~n~--~le~~~~~l~~iI~ 315 (346)
.++++.-.+..+.. +.+.-..+..-.|+.|+ +++++...+..++.
T Consensus 140 ~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 140 VEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 77776655544422 22222234456777777 88888888777664
No 471
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.93 E-value=0.0004 Score=59.88 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.++|+|++||||||+.+.|...+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999875
No 472
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.92 E-value=3.4e-05 Score=67.44 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=35.3
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND 301 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~ 301 (346)
..++++..| .+...+|+..|+..+.+.+.+|+..- +.........+.|+.|+
T Consensus 123 D~vv~V~a~-~~~ri~Rl~~Rd~~s~~~~~~r~~~Q---~~~~~~~~~aD~vI~N~ 174 (179)
T cd02022 123 DRVIVVDAP-PEIQIERLMKRDGLSEEEAEARIASQ---MPLEEKRARADFVIDNS 174 (179)
T ss_pred CeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhc---CCHHHHHHhCCEEEECc
Confidence 345555554 78889999999878888998888652 22212234468888876
No 473
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.00031 Score=59.46 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccccC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..++++|+||+||||+.++|...+.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 4899999999999999999988764
No 474
>PRK13948 shikimate kinase; Provisional
Probab=97.91 E-value=0.00082 Score=59.08 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+..++|+|++||||||+.+.|...+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 56889999999999999999998865
No 475
>PRK13796 GTPase YqeH; Provisional
Probab=97.90 E-value=3.1e-05 Score=75.48 Aligned_cols=94 Identities=22% Similarity=0.224 Sum_probs=61.5
Q ss_pred CCCeeEEEeCCCh-------HHHHH----HHHHcCC---eEEEeccC-cc-----------CCCCCeEEEEcCCCCChHH
Q 019061 95 SSDDCLWFLEVDT-------PYVRE----QKKVVGA---EVVAWSKG-VI-----------GNVEKPVVITGPSGVGKGT 148 (346)
Q Consensus 95 ~~~~~i~~~k~D~-------~~~~~----~~~~~g~---~v~~~~~~-~~-----------~~~g~~~~l~GpsG~GKsT 148 (346)
+.+.++++||+|. +.++. ..+..|+ .++..|+. .. ..+++.+.++|.++|||||
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKST 175 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKST 175 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHH
Confidence 6678899999993 12222 2345565 56777754 11 1257789999999999999
Q ss_pred HHHhhccccCC-----CccceeeecCCcccccccCCeeEEeeChhH
Q 019061 149 LISMLMKEFPS-----MFGFSVSHTTRAPRAMEKDGVHYHFTERSV 189 (346)
Q Consensus 149 l~~~L~~~~~~-----~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~ 189 (346)
|+|.|.+.... ..+ ..++||+.......++..+++.++.+
T Consensus 176 LiN~L~~~~~~~~~~~~~s-~~pGTT~~~~~~~l~~~~~l~DTPGi 220 (365)
T PRK13796 176 LINRIIKEITGEKDVITTS-RFPGTTLDKIEIPLDDGSFLYDTPGI 220 (365)
T ss_pred HHHHHHhhccCccceEEec-CCCCccceeEEEEcCCCcEEEECCCc
Confidence 99999865311 122 45678887766655544466665544
No 476
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.89 E-value=5.1e-05 Score=65.75 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=43.9
Q ss_pred CCCCeeEEEeCCCh--H-HHHHH---HHHcCCeEEEeccCc-cC------------------------CCCCeEEEEcCC
Q 019061 94 SSSDDCLWFLEVDT--P-YVREQ---KKVVGAEVVAWSKGV-IG------------------------NVEKPVVITGPS 142 (346)
Q Consensus 94 ~~~~~~i~~~k~D~--~-~~~~~---~~~~g~~v~~~~~~~-~~------------------------~~g~~~~l~Gps 142 (346)
.+.++++++||+|. + ....+ .+..++.++.+|+.. .+ ..+..++++|.+
T Consensus 45 ~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~ 124 (171)
T cd01856 45 GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIP 124 (171)
T ss_pred cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCC
Confidence 46788999999993 2 22222 134456777777551 10 122479999999
Q ss_pred CCChHHHHHhhcccc
Q 019061 143 GVGKGTLISMLMKEF 157 (346)
Q Consensus 143 G~GKsTl~~~L~~~~ 157 (346)
|+||||++|.|.+..
T Consensus 125 ~vGKstlin~l~~~~ 139 (171)
T cd01856 125 NVGKSTLINRLRGKK 139 (171)
T ss_pred CCCHHHHHHHHhCCC
Confidence 999999999999754
No 477
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.89 E-value=4.9e-06 Score=90.20 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=88.2
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCC--CccceeeecCCccc-ccccCCeeEEeeChhHHHHHHhccc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKDGK 198 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~--~~g~~i~~ttr~~~-~~~~~g~~y~f~s~~~~~~~~~~~~ 198 (346)
++.+.++-..+|...+|+|+||||||||++.|++.... .+| ++....++.. ..-.+-.||.-|..-..+.. +
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~G-di~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~----T 880 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEG-DILISGFPKDQETFARVSGYVEQQDIHSPEL----T 880 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEe-EEEECCeeCchhhhccccceeecccccCccc----c
Confidence 33444444568999999999999999999999997421 233 3433333322 22223467876655444444 7
Q ss_pred hhhhhhhhcccc---CCcHHH----HHHHHHh---C--CceEEEecHHHHHHHHcCCCCeEEEEEcCC-CHHHHHHHHHc
Q 019061 199 FLEFASVHGNLY---GTSVEA----VEAVADA---G--KRCILDIDVQGARSVRASPLDAIFIFICPP-SMEELEERLRA 265 (346)
Q Consensus 199 ~~e~~~~~~~~y---g~~~~~----i~~~~~~---~--~~~iLD~~~~~~~~l~~~~~~~~~ill~~p-~~~~l~eRL~~ 265 (346)
+.|...|.+.+. ..+.++ +++.++- . ...++-..=.|+..-+++++.+.+=++..| ++.-|||+.++
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 888888877663 122221 2222221 1 111111100233333556666777788888 67778999988
Q ss_pred CCCCCHHHHHHHHHH
Q 019061 266 RGTETEDQILKRLRN 280 (346)
Q Consensus 266 R~~~~~e~i~~Rl~~ 280 (346)
.|..+...+.+-++.
T Consensus 961 LDsqaA~~i~~~lrk 975 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRK 975 (1391)
T ss_pred ccHHHHHHHHHHHHH
Confidence 875555555555443
No 478
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.89 E-value=7.1e-05 Score=65.56 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=25.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+|.+++++|+||+||||+++.|.+.+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999999998764
No 479
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.88 E-value=0.00011 Score=64.60 Aligned_cols=62 Identities=26% Similarity=0.350 Sum_probs=44.6
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHHHHhhc
Q 019061 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVICYCLMQ 319 (346)
Q Consensus 255 ~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~~l~~ 319 (346)
+.+.-.+|+..|+..+++..++|++. |+...+.....+.|+.|. ++++..+++..+...+.+
T Consensus 135 d~~~Ql~Rl~~Rd~lse~dAe~Rl~s---Qmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~~~~ 197 (225)
T KOG3220|consen 135 DEELQLERLVERDELSEEDAENRLQS---QMPLEKKCELADVVIDNNGSLEDLYEQVEKVLALLQK 197 (225)
T ss_pred CcHHHHHHHHHhccccHHHHHHHHHh---cCCHHHHHHhhheeecCCCChHHHHHHHHHHHHHhcc
Confidence 35777889999998888999999853 433222233456777665 999988888887776654
No 480
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.86 E-value=9.6e-05 Score=71.46 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=87.4
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCC-----ccceeeecCC--------cccccccCCeeEEeeCh
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTR--------APRAMEKDGVHYHFTER 187 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~-----~g~~i~~ttr--------~~~~~~~~g~~y~f~s~ 187 (346)
.+....++.+..|++++|+|.||||||-.++.++++++.. .| .+..... ..+...-+.++.+||.+
T Consensus 24 ~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg-~i~f~G~dll~~se~~lr~iRG~~I~MIFQEP 102 (534)
T COG4172 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSG-SILFDGEDLLAASERQLRGVRGNKIGMIFQEP 102 (534)
T ss_pred EeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccc-eeEEcChhhhcCCHHHHhhhcccceEEEeccc
Confidence 3344455778899999999999999999999999988751 12 2222111 11111123466778763
Q ss_pred h--HHHHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHc
Q 019061 188 S--VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (346)
Q Consensus 188 ~--~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~ 265 (346)
- +-+-........|-..++ .+...+.+++.. ..-+.... +..-+.|+..
T Consensus 103 MtSLNPl~tIg~Qi~E~l~~H---rg~~~~~Ar~r~--------------lelL~~Vg------------I~~p~~rl~~ 153 (534)
T COG4172 103 MTSLNPLHTIGKQLAEVLRLH---RGLSRAAARARA--------------LELLELVG------------IPEPEKRLDA 153 (534)
T ss_pred ccccCcHhHHHHHHHHHHHHH---hcccHHHHHHHH--------------HHHHHHcC------------CCchhhhhhh
Confidence 1 111111111233333332 233332222111 00011000 1123456666
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC---CHHHHH-HHHHHHHHHhhccc
Q 019061 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND---KLEECY-ENLKVICYCLMQIS 321 (346)
Q Consensus 266 R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~---~le~~~-~~l~~iI~~l~~~~ 321 (346)
...+.+.+.+||+.++-+.... .+..|+++ .+|.++ .+|.+++..|+..-
T Consensus 154 yPHeLSGGqRQRVMIAMALan~------P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~ 207 (534)
T COG4172 154 YPHELSGGQRQRVMIAMALANE------PDLLIADEPTTALDVTVQAQILDLLKELQAEL 207 (534)
T ss_pred CCcccCcchhhHHHHHHHHcCC------CCeEeecCCcchhhhhhHHHHHHHHHHHHHHh
Confidence 6667788888998887655433 46677665 444443 47777777776543
No 481
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.86 E-value=8.1e-05 Score=63.25 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=46.4
Q ss_pred ccCCCCeeEEEeCCCh--H-HHHH---HHHHcCCeEEEeccC-ccC---------------CCCCeEEEEcCCCCChHHH
Q 019061 92 KGSSSDDCLWFLEVDT--P-YVRE---QKKVVGAEVVAWSKG-VIG---------------NVEKPVVITGPSGVGKGTL 149 (346)
Q Consensus 92 ~~~~~~~~i~~~k~D~--~-~~~~---~~~~~g~~v~~~~~~-~~~---------------~~g~~~~l~GpsG~GKsTl 149 (346)
...+.+.++++||+|. + .... +.+..+++++..|+. ..+ .....++++|.+|+||||+
T Consensus 38 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl 117 (156)
T cd01859 38 LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSI 117 (156)
T ss_pred HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHH
Confidence 3457888999999993 2 2222 223456778887765 110 1356789999999999999
Q ss_pred HHhhcccc
Q 019061 150 ISMLMKEF 157 (346)
Q Consensus 150 ~~~L~~~~ 157 (346)
+|.|.+..
T Consensus 118 ~~~l~~~~ 125 (156)
T cd01859 118 INALKGRH 125 (156)
T ss_pred HHHHhCCC
Confidence 99998654
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.86 E-value=0.00013 Score=64.72 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+++|+|||||||||++++|.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999886
No 483
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.82 E-value=1.7e-06 Score=77.51 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=21.7
Q ss_pred eEEEEcCCCCChHHHHHhhc----cccCC
Q 019061 135 PVVITGPSGVGKGTLISMLM----KEFPS 159 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~----~~~~~ 159 (346)
+++|+||||+|||||+++|. +..++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~ 52 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPP 52 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999984 55444
No 484
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.81 E-value=0.00026 Score=59.61 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|++||||||+++.|...+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 485
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.80 E-value=0.00039 Score=60.17 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=25.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+|.++-|.|.|||||||++++|...+.
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999988764
No 486
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=4.1e-06 Score=82.73 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=35.6
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcc
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
-.+|.+++...++.....|+.++|+|+||+|||||+++|..
T Consensus 88 La~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 88 LAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 45777777776777778999999999999999999999987
No 487
>PLN02199 shikimate kinase
Probab=97.77 E-value=0.0011 Score=62.18 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++|+.++|+|..||||||+.+.|...+
T Consensus 100 l~~~~I~LIG~~GSGKSTVgr~LA~~L 126 (303)
T PLN02199 100 LNGRSMYLVGMMGSGKTTVGKLMSKVL 126 (303)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999998864
No 488
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.77 E-value=0.00028 Score=72.61 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=26.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.+|.+++|+|++||||||+++.|...+..
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 37889999999999999999999988754
No 489
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00078 Score=61.06 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=36.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 262 RLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 262 RL~~R~~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
+|.+|.+|+.+.++.|+..|..+ +++|...+.+....+.. .++++..+...+...
T Consensus 167 pL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~ 225 (235)
T KOG3078|consen 167 PLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKK 225 (235)
T ss_pred hhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhh
Confidence 35556688999999999999865 56665555444444444 677777666666544
No 490
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.74 E-value=2.6e-05 Score=62.37 Aligned_cols=27 Identities=41% Similarity=0.411 Sum_probs=24.2
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLM 154 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~ 154 (346)
+....|+.++|+||||||||||++++.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 455678999999999999999999986
No 491
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.72 E-value=0.00035 Score=69.39 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=55.9
Q ss_pred HHHHHHHHhCCceEEEe---cHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCC-----HHHHHHHHHHHHH---
Q 019061 215 EAVEAVADAGKRCILDI---DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET-----EDQILKRLRNAKE--- 283 (346)
Q Consensus 215 ~~i~~~~~~~~~~iLD~---~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~-----~e~i~~Rl~~~~~--- 283 (346)
..++..+..|..+++|+ .|...............+++..++.+.-.+|+..|+..+ .+.-.+-+...+.
T Consensus 350 ~vI~r~l~eG~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQd 429 (475)
T PRK12337 350 AIQERSAQEGTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRETGASRPRERYLRHFEEIRLIQD 429 (475)
T ss_pred HHHHHHHHcCCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhccCCCchhHHHHhHHHHHHHHH
Confidence 34666677899999995 555444333444455556677777899999998886433 1111111211110
Q ss_pred -HHHhccCCCCceEEEcCCCHHHHHHHHHHHH
Q 019061 284 -EIKQGKSSGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 284 -~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
.+......+ --+|.|.|++++...+.+.|
T Consensus 430 yLv~~A~~~~--ipvI~n~nid~tv~~~l~~i 459 (475)
T PRK12337 430 HLLRLARQEG--VPVLPGEDLDESIDKALEVV 459 (475)
T ss_pred HHHHHHHHcC--CCeecCccHHHHHHHHHHHH
Confidence 111111112 25678889999888666554
No 492
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.71 E-value=0.00024 Score=62.26 Aligned_cols=92 Identities=23% Similarity=0.299 Sum_probs=50.0
Q ss_pred HHHHHHHhCCceEEEe---------------cHHHHHHHHcCCC--Ce-EEEEEcCCCHHHHHHHHHcCCC----C-CHH
Q 019061 216 AVEAVADAGKRCILDI---------------DVQGARSVRASPL--DA-IFIFICPPSMEELEERLRARGT----E-TED 272 (346)
Q Consensus 216 ~i~~~~~~~~~~iLD~---------------~~~~~~~l~~~~~--~~-~~ill~~p~~~~l~eRL~~R~~----~-~~e 272 (346)
.+...+..|..+++|= +......+..... .+ +++|+..+ .++..+|+..|+. . ...
T Consensus 72 ~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~-pe~~~~R~~~r~~~~~~~~~~~ 150 (186)
T PF02223_consen 72 VIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVD-PEEALKRIAKRGEKDDEEEEDL 150 (186)
T ss_dssp THHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECC-HHHHHHHHHHTSSTTTTTTHHH
T ss_pred HHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecC-HHHHHHHHHcCCccchHHHHHH
Confidence 3455567889999992 1222333322111 33 34444443 6899999998876 1 122
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHH
Q 019061 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310 (346)
Q Consensus 273 ~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l 310 (346)
...+++.....++.. ...-+..+.++.+++++.++|
T Consensus 151 ~~~~~~~~~y~~l~~--~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 151 EYLRRVREAYLELAK--DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHHHHHHHHHHHH--TTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEECCCCHHHHHhhC
Confidence 344444443333332 234467777888998887764
No 493
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.0005 Score=66.43 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=34.1
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
.++.+|+++.++|.|||||||+++.|.|.+.|..| .|.
T Consensus 344 l~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG-~I~ 381 (546)
T COG4615 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSG-EIL 381 (546)
T ss_pred eEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCC-cee
Confidence 45679999999999999999999999999999888 544
No 494
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.69 E-value=0.00035 Score=58.83 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+++|+|++||||||+++.|....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 495
>PLN03073 ABC transporter F family; Provisional
Probab=97.68 E-value=2.1e-05 Score=83.04 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=38.1
Q ss_pred HHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 112 ~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
++.+.||...++.+.++.+..|+.++|+||||||||||+++|.+.
T Consensus 182 nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 182 NFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred eEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 444667666677777788889999999999999999999999985
No 496
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.67 E-value=0.00021 Score=62.16 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA 174 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~ 174 (346)
-.++++|.+++|||||+|.|.+......+ ..+.+|+....
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~ 157 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQE 157 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEE
Confidence 47899999999999999999987554444 45566665443
No 497
>PRK00625 shikimate kinase; Provisional
Probab=97.67 E-value=0.00099 Score=58.07 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHhhccccC
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++|+|.+||||||+.+.|...+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988753
No 498
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.67 E-value=0.00013 Score=71.00 Aligned_cols=94 Identities=21% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCCeeEEEeCCCh-------HHHHH----HHHHcCC---eEEEeccC-cc-----------CCCCCeEEEEcCCCCChHH
Q 019061 95 SSDDCLWFLEVDT-------PYVRE----QKKVVGA---EVVAWSKG-VI-----------GNVEKPVVITGPSGVGKGT 148 (346)
Q Consensus 95 ~~~~~i~~~k~D~-------~~~~~----~~~~~g~---~v~~~~~~-~~-----------~~~g~~~~l~GpsG~GKsT 148 (346)
+.+.++++||+|. +.+.+ ..+..|. .++..|+. .. ...|+.+.++|.+++||||
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKSt 169 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSS 169 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 5678899999993 12222 2355665 46777765 11 1246789999999999999
Q ss_pred HHHhhccccCCC----ccceeeecCCcccccccCCeeEEeeChh
Q 019061 149 LISMLMKEFPSM----FGFSVSHTTRAPRAMEKDGVHYHFTERS 188 (346)
Q Consensus 149 l~~~L~~~~~~~----~g~~i~~ttr~~~~~~~~g~~y~f~s~~ 188 (346)
|+|.|.+..... +....++||+........+..+++.++.
T Consensus 170 liN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG 213 (360)
T TIGR03597 170 LINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPG 213 (360)
T ss_pred HHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCC
Confidence 999999864321 1113356777665555533334545443
No 499
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.64 E-value=0.00016 Score=80.11 Aligned_cols=118 Identities=23% Similarity=0.320 Sum_probs=72.5
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhh
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~ 205 (346)
.++...+|+.++++||-|||||||+.+|.|..+...|....+ ...+|..|.+= +.++++.|+.-+
T Consensus 540 In~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~----------gsiaYv~Q~pW-----I~ngTvreNILF 604 (1381)
T KOG0054|consen 540 INFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVN----------GSVAYVPQQPW-----IQNGTVRENILF 604 (1381)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEc----------CeEEEeccccH-----hhCCcHHHhhhc
Confidence 345678999999999999999999999999998877722222 12678777642 444566666533
Q ss_pred hccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHH----HHHHcCCCCCHHHHHHHHHHH
Q 019061 206 HGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELE----ERLRARGTETEDQILKRLRNA 281 (346)
Q Consensus 206 ~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~----eRL~~R~~~~~e~i~~Rl~~~ 281 (346)
...+ . .+..++.++ .|-|+-|. +.+- .-+.+||...+++.++|+.-+
T Consensus 605 G~~~-d--~~rY~~Vi~---aC~L~~Dl-----------------------e~Lp~GD~TeIGErGinLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 605 GSPY-D--EERYDKVIK---ACALKKDL-----------------------EILPFGDLTEIGERGINLSGGQKQRISLA 655 (1381)
T ss_pred Cccc-c--HHHHHHHHH---HccCHhHH-----------------------hhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence 2211 1 122222222 12221111 1110 124567777789999999999
Q ss_pred HHHHHh
Q 019061 282 KEEIKQ 287 (346)
Q Consensus 282 ~~~i~~ 287 (346)
++-.+.
T Consensus 656 RAVY~~ 661 (1381)
T KOG0054|consen 656 RAVYQD 661 (1381)
T ss_pred HHHhcc
Confidence 977654
No 500
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.64 E-value=0.00015 Score=67.86 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=52.5
Q ss_pred CCCeeEEEeCCCh--HH-HHHHH---HHcCCeEEEeccCc-cC-------------------------CCCCeEEEEcCC
Q 019061 95 SSDDCLWFLEVDT--PY-VREQK---KVVGAEVVAWSKGV-IG-------------------------NVEKPVVITGPS 142 (346)
Q Consensus 95 ~~~~~i~~~k~D~--~~-~~~~~---~~~g~~v~~~~~~~-~~-------------------------~~g~~~~l~Gps 142 (346)
+.+.++++||+|. +. .+.+. +..+..++..|+.. .+ ...-.++++|.+
T Consensus 48 ~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~ 127 (276)
T TIGR03596 48 NKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIP 127 (276)
T ss_pred CCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCC
Confidence 5677899999994 21 22221 23466777777541 10 012358999999
Q ss_pred CCChHHHHHhhccccCCCccceeeecCCccccccc
Q 019061 143 GVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK 177 (346)
Q Consensus 143 G~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~ 177 (346)
|+||||++|.|.+......+ ..+.+|+.......
T Consensus 128 nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~ 161 (276)
T TIGR03596 128 NVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKL 161 (276)
T ss_pred CCCHHHHHHHHhCCCccccC-CCCCeecceEEEEe
Confidence 99999999999876544444 45556666544433
Done!