Query 019061
Match_columns 346
No_of_seqs 343 out of 3825
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 10:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ex7_A Guanylate kinase; subst 100.0 1E-32 3.5E-37 241.9 16.2 181 134-315 2-183 (186)
2 1t9h_A YLOQ, probable GTPase E 100.0 9.1E-29 3.1E-33 232.7 8.5 156 28-188 46-233 (307)
3 3ney_A 55 kDa erythrocyte memb 99.9 2.3E-27 7.8E-32 209.5 14.0 183 129-325 15-197 (197)
4 3a00_A Guanylate kinase, GMP k 99.9 1.6E-27 5.6E-32 208.4 11.1 182 133-315 1-183 (186)
5 1s96_A Guanylate kinase, GMP k 99.9 6.4E-26 2.2E-30 203.9 16.3 184 130-317 13-198 (219)
6 3tvt_A Disks large 1 tumor sup 99.9 6.7E-26 2.3E-30 211.6 15.4 187 131-326 98-285 (292)
7 3tau_A Guanylate kinase, GMP k 99.9 5.8E-26 2E-30 202.2 11.3 184 131-317 6-189 (208)
8 2rcn_A Probable GTPase ENGC; Y 99.9 3.6E-25 1.2E-29 212.0 12.9 138 22-162 70-245 (358)
9 1lvg_A Guanylate kinase, GMP k 99.9 1.9E-24 6.6E-29 191.0 15.7 186 132-317 3-188 (198)
10 1kjw_A Postsynaptic density pr 99.9 2.7E-24 9.3E-29 201.4 15.6 186 131-326 103-290 (295)
11 1kgd_A CASK, peripheral plasma 99.9 4.7E-24 1.6E-28 185.5 11.1 177 131-317 3-179 (180)
12 2qor_A Guanylate kinase; phosp 99.9 4.1E-23 1.4E-27 182.9 17.3 188 130-318 9-198 (204)
13 2yv5_A YJEQ protein; hydrolase 99.9 2E-23 6.9E-28 196.4 12.9 163 21-188 29-225 (302)
14 3tr0_A Guanylate kinase, GMP k 99.9 1.8E-22 6.2E-27 177.8 14.8 184 130-317 4-187 (205)
15 1z6g_A Guanylate kinase; struc 99.9 2.5E-21 8.5E-26 173.6 17.9 187 128-318 18-209 (218)
16 2xkx_A Disks large homolog 4; 99.9 3.4E-21 1.2E-25 200.8 18.6 186 131-326 529-716 (721)
17 3lnc_A Guanylate kinase, GMP k 99.9 3.9E-22 1.3E-26 179.8 10.0 187 128-318 22-210 (231)
18 2j41_A Guanylate kinase; GMP, 99.8 7.1E-20 2.4E-24 161.2 11.7 185 130-317 3-187 (207)
19 1znw_A Guanylate kinase, GMP k 99.8 1.8E-18 6E-23 153.4 16.7 183 129-315 16-200 (207)
20 3shw_A Tight junction protein 99.7 2.7E-17 9.1E-22 162.2 11.2 165 130-332 221-387 (468)
21 3tsz_A Tight junction protein 99.7 8.2E-17 2.8E-21 156.2 13.0 158 131-326 230-389 (391)
22 1u0l_A Probable GTPase ENGC; p 99.7 5.4E-17 1.9E-21 152.3 11.1 156 29-188 45-230 (301)
23 3kfv_A Tight junction protein 99.6 2.1E-15 7.1E-20 141.0 11.8 162 130-332 142-304 (308)
24 4dey_A Voltage-dependent L-typ 99.6 4.5E-15 1.5E-19 139.4 8.2 177 132-319 141-323 (337)
25 3rlf_A Maltose/maltodextrin im 99.4 1.1E-13 3.8E-18 133.3 5.9 98 114-216 10-109 (381)
26 3fvq_A Fe(3+) IONS import ATP- 99.4 2.2E-13 7.4E-18 130.4 6.6 93 114-211 11-109 (359)
27 3umf_A Adenylate kinase; rossm 99.4 1.5E-12 5.2E-17 116.3 10.6 164 130-317 26-214 (217)
28 3sr0_A Adenylate kinase; phosp 99.4 5.6E-12 1.9E-16 111.8 13.3 158 135-315 2-203 (206)
29 2it1_A 362AA long hypothetical 99.4 2.3E-14 7.8E-19 137.5 -3.4 180 115-306 11-197 (362)
30 3tui_C Methionine import ATP-b 99.4 5.6E-13 1.9E-17 127.7 6.3 178 121-340 42-231 (366)
31 1g29_1 MALK, maltose transport 99.3 8.2E-13 2.8E-17 127.2 6.8 95 115-214 11-113 (372)
32 1oxx_K GLCV, glucose, ABC tran 99.3 1.4E-14 4.9E-19 138.6 -5.8 173 122-306 20-204 (353)
33 2yyz_A Sugar ABC transporter, 99.3 6.4E-13 2.2E-17 127.3 5.0 94 115-213 11-106 (359)
34 1v43_A Sugar-binding transport 99.3 8E-13 2.7E-17 127.2 5.7 96 114-214 18-115 (372)
35 1z47_A CYSA, putative ABC-tran 99.3 6E-13 2E-17 127.3 3.4 94 115-213 22-118 (355)
36 1vpl_A ABC transporter, ATP-bi 99.3 2.6E-12 8.8E-17 117.7 7.2 180 114-340 22-213 (256)
37 3d31_A Sulfate/molybdate ABC t 99.3 1.4E-14 4.7E-19 138.4 -8.9 86 115-206 9-96 (348)
38 1g6h_A High-affinity branched- 99.3 1.1E-11 3.7E-16 113.6 10.6 184 115-340 15-220 (257)
39 1b0u_A Histidine permease; ABC 99.3 2.1E-12 7.2E-17 118.7 5.8 86 115-205 14-116 (262)
40 3gfo_A Cobalt import ATP-bindi 99.3 3.2E-12 1.1E-16 118.3 5.7 184 115-340 15-211 (275)
41 1ji0_A ABC transporter; ATP bi 99.3 1.6E-11 5.6E-16 111.2 10.0 188 115-340 14-206 (240)
42 2olj_A Amino acid ABC transpor 99.3 3E-12 1E-16 117.7 5.1 86 115-205 32-123 (263)
43 1sgw_A Putative ABC transporte 99.3 1.5E-13 5.1E-18 122.6 -3.7 176 115-340 18-200 (214)
44 4g1u_C Hemin import ATP-bindin 99.2 8E-12 2.7E-16 115.1 7.2 187 114-340 18-215 (266)
45 2pcj_A ABC transporter, lipopr 99.2 2.6E-12 9E-17 115.3 3.6 179 115-336 12-203 (224)
46 3tif_A Uncharacterized ABC tra 99.2 5.4E-12 1.8E-16 114.1 4.7 171 122-334 20-207 (235)
47 2nq2_C Hypothetical ABC transp 99.2 1.8E-11 6.1E-16 111.9 7.5 76 116-205 13-89 (253)
48 3tlx_A Adenylate kinase 2; str 99.2 8.8E-11 3E-15 106.4 11.7 167 132-315 28-242 (243)
49 2yz2_A Putative ABC transporte 99.1 1.1E-10 3.7E-15 107.4 9.5 179 120-340 20-205 (266)
50 2qi9_C Vitamin B12 import ATP- 99.1 5.6E-11 1.9E-15 108.3 6.3 172 126-340 19-200 (249)
51 2onk_A Molybdate/tungstate ABC 99.1 2.9E-11 1E-15 109.6 4.0 78 123-206 15-94 (240)
52 2ff7_A Alpha-hemolysin translo 99.1 3.2E-10 1.1E-14 103.2 10.9 182 120-336 22-207 (247)
53 2pjz_A Hypothetical protein ST 99.1 1.4E-10 4.9E-15 106.4 7.9 172 120-340 18-192 (263)
54 2ihy_A ABC transporter, ATP-bi 99.1 1.2E-10 4.2E-15 107.8 6.9 74 114-188 28-107 (279)
55 2d2e_A SUFC protein; ABC-ATPas 99.1 2.1E-10 7.3E-15 104.5 8.3 187 115-339 11-209 (250)
56 3dl0_A Adenylate kinase; phosp 99.1 8.6E-10 3E-14 97.4 11.8 93 224-317 78-215 (216)
57 3nh6_A ATP-binding cassette SU 99.1 1.2E-10 4.1E-15 109.2 6.2 180 120-334 67-250 (306)
58 3fb4_A Adenylate kinase; psych 99.1 1.4E-09 4.8E-14 96.0 12.3 93 224-317 78-215 (216)
59 2ixe_A Antigen peptide transpo 99.0 4.8E-10 1.7E-14 103.4 8.8 80 121-206 33-116 (271)
60 2c95_A Adenylate kinase 1; tra 99.0 2E-09 6.7E-14 93.2 11.1 173 132-317 8-194 (196)
61 4eaq_A DTMP kinase, thymidylat 99.0 2.9E-09 9.9E-14 95.6 12.2 175 130-318 23-226 (229)
62 3b5x_A Lipid A export ATP-bind 99.0 1.8E-09 6.1E-14 109.9 11.3 180 121-334 357-540 (582)
63 3gmt_A Adenylate kinase; ssgci 99.0 5.3E-09 1.8E-13 93.8 13.1 91 224-315 86-228 (230)
64 3gd7_A Fusion complex of cysti 99.0 5.7E-10 2E-14 107.9 7.0 80 118-204 32-115 (390)
65 2ghi_A Transport protein; mult 99.0 2.4E-09 8.3E-14 98.0 10.7 179 122-336 35-217 (260)
66 3lw7_A Adenylate kinase relate 99.0 1.3E-08 4.5E-13 85.6 14.1 94 222-317 76-177 (179)
67 1mv5_A LMRA, multidrug resista 99.0 1.1E-11 3.9E-16 112.5 -5.5 78 122-205 17-98 (243)
68 2cbz_A Multidrug resistance-as 98.9 1.5E-09 5.2E-14 98.0 8.4 70 122-206 20-89 (237)
69 2zu0_C Probable ATP-dependent 98.9 1.6E-09 5.5E-14 99.6 8.1 76 115-191 28-110 (267)
70 4eun_A Thermoresistant glucoki 98.9 7.4E-09 2.5E-13 90.5 11.9 158 131-315 27-192 (200)
71 3vaa_A Shikimate kinase, SK; s 98.9 1E-08 3.6E-13 89.5 11.7 161 128-318 20-197 (199)
72 2pze_A Cystic fibrosis transme 98.9 2.3E-09 7.9E-14 96.3 6.9 69 122-205 23-91 (229)
73 3b60_A Lipid A export ATP-bind 98.9 2.4E-09 8.3E-14 108.9 7.5 175 122-335 358-541 (582)
74 4a82_A Cystic fibrosis transme 98.9 2.6E-09 9E-14 108.5 7.4 180 122-336 356-539 (578)
75 1ukz_A Uridylate kinase; trans 98.9 2.8E-08 9.5E-13 86.7 12.9 173 131-316 13-201 (203)
76 3t61_A Gluconokinase; PSI-biol 98.8 2.1E-08 7.1E-13 87.6 12.0 158 133-317 18-180 (202)
77 3lv8_A DTMP kinase, thymidylat 98.8 2.9E-08 9.9E-13 89.6 13.2 175 131-318 25-230 (236)
78 2yl4_A ATP-binding cassette SU 98.8 3.3E-09 1.1E-13 108.1 7.8 181 121-334 358-543 (595)
79 2xb4_A Adenylate kinase; ATP-b 98.8 1E-08 3.5E-13 91.3 9.9 163 135-314 2-222 (223)
80 3v9p_A DTMP kinase, thymidylat 98.8 5E-09 1.7E-13 94.1 7.3 176 130-317 22-227 (227)
81 3qf4_A ABC transporter, ATP-bi 98.8 2.7E-09 9.2E-14 108.7 5.8 178 122-334 358-539 (587)
82 4edh_A DTMP kinase, thymidylat 98.8 3.4E-08 1.2E-12 87.7 12.2 175 131-318 4-208 (213)
83 2bbs_A Cystic fibrosis transme 98.8 1E-08 3.4E-13 95.4 8.8 61 120-190 51-111 (290)
84 2bwj_A Adenylate kinase 5; pho 98.8 2.5E-08 8.6E-13 86.3 10.7 173 132-317 11-197 (199)
85 2plr_A DTMP kinase, probable t 98.8 1.5E-07 5.1E-12 82.0 15.3 166 132-317 3-208 (213)
86 3cm0_A Adenylate kinase; ATP-b 98.8 3.7E-08 1.3E-12 84.4 11.1 67 247-314 108-184 (186)
87 1knq_A Gluconate kinase; ALFA/ 98.8 9.7E-08 3.3E-12 81.2 13.5 159 131-315 6-172 (175)
88 1tev_A UMP-CMP kinase; ploop, 98.8 9.4E-08 3.2E-12 82.1 12.8 93 223-316 85-194 (196)
89 4f4c_A Multidrug resistance pr 98.7 6.3E-09 2.1E-13 115.0 6.1 173 122-331 1094-1274(1321)
90 1qf9_A UMP/CMP kinase, protein 98.7 5.3E-07 1.8E-11 77.2 17.1 94 223-316 82-191 (194)
91 3be4_A Adenylate kinase; malar 98.7 1.5E-07 5E-12 83.3 13.9 163 132-313 4-216 (217)
92 1gvn_B Zeta; postsegregational 98.7 2.6E-08 8.8E-13 92.5 9.1 167 131-317 31-229 (287)
93 2v54_A DTMP kinase, thymidylat 98.7 7.4E-08 2.5E-12 83.7 11.6 173 132-318 3-192 (204)
94 3qf4_B Uncharacterized ABC tra 98.7 3.8E-09 1.3E-13 107.8 3.7 177 124-335 372-552 (598)
95 1zak_A Adenylate kinase; ATP:A 98.7 6.6E-09 2.3E-13 92.2 4.8 51 266-318 158-212 (222)
96 1ak2_A Adenylate kinase isoenz 98.7 4.7E-07 1.6E-11 80.9 16.7 93 224-317 94-231 (233)
97 1zd8_A GTP:AMP phosphotransfer 98.7 6.2E-07 2.1E-11 79.6 17.4 92 224-317 84-215 (227)
98 2cdn_A Adenylate kinase; phosp 98.7 4E-07 1.4E-11 79.2 15.7 89 223-314 97-199 (201)
99 2bbw_A Adenylate kinase 4, AK4 98.7 1.2E-09 4.1E-14 98.7 -0.6 92 225-317 130-235 (246)
100 2z0h_A DTMP kinase, thymidylat 98.7 6.5E-08 2.2E-12 83.5 9.9 169 135-317 2-192 (197)
101 1aky_A Adenylate kinase; ATP:A 98.7 2.8E-07 9.6E-12 81.5 14.2 92 223-315 82-218 (220)
102 1nn5_A Similar to deoxythymidy 98.6 7.7E-08 2.6E-12 84.2 8.9 175 131-318 7-202 (215)
103 3g5u_A MCG1178, multidrug resi 98.6 4.8E-08 1.6E-12 107.7 8.8 175 128-335 1054-1232(1284)
104 3bk7_A ABC transporter ATP-bin 98.6 5.4E-10 1.9E-14 114.1 -7.3 50 129-188 378-427 (607)
105 3kb2_A SPBC2 prophage-derived 98.6 8.7E-07 3E-11 74.5 13.9 67 247-317 97-167 (173)
106 2jeo_A Uridine-cytidine kinase 98.6 2.4E-07 8.1E-12 83.6 10.7 40 118-157 10-49 (245)
107 4tmk_A Protein (thymidylate ki 98.6 7.4E-07 2.5E-11 79.1 13.7 173 132-318 2-208 (213)
108 1e4v_A Adenylate kinase; trans 98.6 4.4E-07 1.5E-11 79.9 12.1 49 266-314 156-213 (214)
109 3ozx_A RNAse L inhibitor; ATP 98.6 4.9E-08 1.7E-12 98.3 6.3 36 127-162 288-323 (538)
110 1yqt_A RNAse L inhibitor; ATP- 98.5 5.2E-08 1.8E-12 98.2 5.7 51 128-188 307-357 (538)
111 3nwj_A ATSK2; P loop, shikimat 98.5 3.7E-07 1.3E-11 83.0 10.6 26 133-158 48-73 (250)
112 3trf_A Shikimate kinase, SK; a 98.5 3.9E-07 1.3E-11 78.0 10.1 25 133-157 5-29 (185)
113 1ly1_A Polynucleotide kinase; 98.5 5.4E-07 1.8E-11 76.4 10.7 68 216-284 67-146 (181)
114 3g5u_A MCG1178, multidrug resi 98.5 7.6E-08 2.6E-12 106.1 6.2 173 122-334 405-586 (1284)
115 3cnl_A YLQF, putative uncharac 98.5 2.4E-07 8.1E-12 84.8 8.5 77 95-173 46-138 (262)
116 1nks_A Adenylate kinase; therm 98.5 3.2E-07 1.1E-11 78.6 8.5 25 134-158 2-26 (194)
117 2pbr_A DTMP kinase, thymidylat 98.5 2E-06 6.8E-11 73.7 13.6 69 246-317 124-192 (195)
118 1qhx_A CPT, protein (chloramph 98.5 8.4E-07 2.9E-11 75.3 11.1 27 132-158 2-28 (178)
119 4f4c_A Multidrug resistance pr 98.5 7.6E-08 2.6E-12 106.4 5.7 171 122-332 433-612 (1321)
120 3j16_B RLI1P; ribosome recycli 98.5 1.3E-07 4.4E-12 96.4 6.9 34 130-163 375-408 (608)
121 1kht_A Adenylate kinase; phosp 98.5 1.5E-06 5.2E-11 74.3 12.7 27 132-158 2-28 (192)
122 4hlc_A DTMP kinase, thymidylat 98.5 1.7E-06 5.8E-11 76.2 12.6 171 133-317 2-201 (205)
123 3ld9_A DTMP kinase, thymidylat 98.5 1.6E-07 5.6E-12 83.9 6.1 176 130-318 18-217 (223)
124 3a8t_A Adenylate isopentenyltr 98.4 2.8E-07 9.5E-12 87.1 7.5 126 132-267 39-195 (339)
125 2bdt_A BH3686; alpha-beta prot 98.4 7.2E-07 2.5E-11 76.7 9.3 24 133-156 2-25 (189)
126 2rhm_A Putative kinase; P-loop 98.4 3.4E-07 1.2E-11 78.6 7.2 26 132-157 4-29 (193)
127 2vp4_A Deoxynucleoside kinase; 98.4 2.4E-07 8.3E-12 82.8 6.5 71 246-317 148-225 (230)
128 3bk7_A ABC transporter ATP-bin 98.4 2.7E-07 9.2E-12 94.1 6.7 51 112-163 96-147 (607)
129 1htw_A HI0065; nucleotide-bind 98.4 3.1E-08 1.1E-12 83.9 -0.4 35 127-162 27-61 (158)
130 1jjv_A Dephospho-COA kinase; P 98.4 1.4E-06 4.9E-11 75.9 10.3 69 246-318 125-198 (206)
131 1yqt_A RNAse L inhibitor; ATP- 98.4 2.9E-07 9.8E-12 92.7 6.6 50 113-163 27-77 (538)
132 4gp7_A Metallophosphoesterase; 98.4 1.9E-06 6.5E-11 73.3 10.6 27 129-155 5-31 (171)
133 3j16_B RLI1P; ribosome recycli 98.4 8.2E-07 2.8E-11 90.5 9.7 34 129-162 99-132 (608)
134 3tmk_A Thymidylate kinase; pho 98.4 5.1E-06 1.7E-10 73.8 13.1 171 132-318 4-204 (216)
135 2wwf_A Thymidilate kinase, put 98.3 1.1E-06 3.7E-11 76.7 8.2 28 131-158 8-35 (212)
136 1tq4_A IIGP1, interferon-induc 98.3 3.1E-06 1.1E-10 82.2 10.5 136 133-282 69-213 (413)
137 4e22_A Cytidylate kinase; P-lo 98.3 6.9E-07 2.4E-11 81.0 5.3 26 131-156 25-50 (252)
138 3hjn_A DTMP kinase, thymidylat 98.2 8.7E-06 3E-10 71.1 11.8 168 135-316 2-191 (197)
139 2jaq_A Deoxyguanosine kinase; 98.2 8.1E-06 2.8E-10 70.4 11.1 70 247-318 127-202 (205)
140 1zp6_A Hypothetical protein AT 98.2 3.6E-06 1.2E-10 72.2 8.6 27 130-156 6-32 (191)
141 1puj_A YLQF, conserved hypothe 98.2 3.2E-06 1.1E-10 78.1 8.8 86 81-174 43-160 (282)
142 2qt1_A Nicotinamide riboside k 98.2 1E-05 3.5E-10 70.5 11.5 28 130-157 18-45 (207)
143 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 4.3E-06 1.5E-10 76.1 9.3 26 132-157 3-28 (260)
144 1y63_A LMAJ004144AAA protein; 98.2 3.8E-05 1.3E-09 65.8 14.5 27 130-156 7-33 (184)
145 1kag_A SKI, shikimate kinase I 98.2 1E-05 3.4E-10 68.2 10.7 27 132-158 3-29 (173)
146 2f6r_A COA synthase, bifunctio 98.2 1E-06 3.5E-11 81.3 4.7 88 225-318 182-270 (281)
147 2vli_A Antibiotic resistance p 98.2 2.4E-05 8.2E-10 66.4 12.9 27 132-158 4-30 (183)
148 2iw3_A Elongation factor 3A; a 98.2 3.7E-06 1.3E-10 89.5 9.4 41 115-155 443-483 (986)
149 4i1u_A Dephospho-COA kinase; s 98.2 2.3E-07 7.8E-12 82.1 -0.0 86 225-319 113-204 (210)
150 1e6c_A Shikimate kinase; phosp 98.2 2.5E-05 8.6E-10 65.6 12.7 24 134-157 3-26 (173)
151 1ltq_A Polynucleotide kinase; 98.1 1.1E-05 3.8E-10 74.4 11.0 63 222-284 76-146 (301)
152 2ze6_A Isopentenyl transferase 98.1 4E-06 1.4E-10 76.0 7.2 123 134-267 2-139 (253)
153 3iij_A Coilin-interacting nucl 98.1 1.9E-05 6.4E-10 67.1 10.8 27 131-157 9-35 (180)
154 2pt5_A Shikimate kinase, SK; a 98.1 3E-05 1E-09 64.8 11.9 23 135-157 2-24 (168)
155 3uie_A Adenylyl-sulfate kinase 98.1 5.1E-06 1.7E-10 72.3 6.9 29 130-158 22-50 (200)
156 3zvl_A Bifunctional polynucleo 98.1 7E-06 2.4E-10 79.9 8.4 96 132-267 257-358 (416)
157 3exa_A TRNA delta(2)-isopenten 98.1 1.7E-06 5.8E-11 80.9 3.6 59 132-190 2-68 (322)
158 2if2_A Dephospho-COA kinase; a 98.1 1.1E-05 3.8E-10 70.0 8.6 67 246-317 125-192 (204)
159 1gtv_A TMK, thymidylate kinase 98.1 4.5E-07 1.5E-11 79.3 -0.4 25 134-158 1-25 (214)
160 3eph_A TRNA isopentenyltransfe 98.0 1.8E-06 6.1E-11 83.4 3.4 88 133-230 2-97 (409)
161 3sop_A Neuronal-specific septi 98.0 5.6E-07 1.9E-11 82.7 -0.4 28 135-162 4-31 (270)
162 1m7g_A Adenylylsulfate kinase; 98.0 5.4E-06 1.9E-10 72.7 5.9 33 130-162 22-54 (211)
163 1uf9_A TT1252 protein; P-loop, 98.0 1.1E-05 3.8E-10 69.6 7.8 68 246-317 126-194 (203)
164 2iyv_A Shikimate kinase, SK; t 98.0 1.4E-05 4.8E-10 68.1 8.3 25 133-157 2-26 (184)
165 2pez_A Bifunctional 3'-phospho 98.0 4.2E-06 1.4E-10 71.2 4.5 28 131-158 3-30 (179)
166 3b9q_A Chloroplast SRP recepto 98.0 4.6E-06 1.6E-10 77.8 4.8 35 128-162 95-129 (302)
167 1zuh_A Shikimate kinase; alpha 98.0 7.3E-05 2.5E-09 62.7 11.9 25 133-157 7-31 (168)
168 3foz_A TRNA delta(2)-isopenten 97.9 2.6E-06 9E-11 79.5 2.3 58 132-189 9-74 (316)
169 3ec1_A YQEH GTPase; atnos1, at 97.9 1.6E-05 5.5E-10 76.2 7.8 82 95-177 98-210 (369)
170 2yvu_A Probable adenylyl-sulfa 97.9 1.5E-05 5.1E-10 68.2 6.5 29 130-158 10-38 (186)
171 1cke_A CK, MSSA, protein (cyti 97.9 3E-05 1E-09 68.2 8.5 25 133-157 5-29 (227)
172 3ux8_A Excinuclease ABC, A sub 97.9 1.7E-07 5.8E-12 96.8 -7.1 23 128-150 39-61 (670)
173 3fdi_A Uncharacterized protein 97.9 0.00011 3.8E-09 64.2 11.8 90 223-315 97-197 (201)
174 3h2y_A GTPase family protein; 97.9 1.8E-05 6.1E-10 75.8 7.2 92 95-187 96-219 (368)
175 1rj9_A FTSY, signal recognitio 97.9 7.3E-06 2.5E-10 76.5 4.2 31 132-162 101-131 (304)
176 1vht_A Dephospho-COA kinase; s 97.9 7.4E-06 2.5E-10 72.0 3.9 68 247-318 128-196 (218)
177 3b85_A Phosphate starvation-in 97.9 3.2E-06 1.1E-10 74.6 1.4 31 131-162 20-50 (208)
178 1via_A Shikimate kinase; struc 97.9 2.6E-05 8.8E-10 66.1 7.1 24 134-157 5-28 (175)
179 2p5t_B PEZT; postsegregational 97.9 2.4E-05 8.3E-10 70.7 7.2 29 130-158 29-57 (253)
180 1q3t_A Cytidylate kinase; nucl 97.8 0.00044 1.5E-08 61.5 14.9 28 130-157 13-40 (236)
181 3hdt_A Putative kinase; struct 97.8 8.5E-05 2.9E-09 66.1 10.1 97 217-316 109-218 (223)
182 3aez_A Pantothenate kinase; tr 97.8 9.2E-06 3.2E-10 76.1 3.8 33 130-162 87-119 (312)
183 2og2_A Putative signal recogni 97.8 1.5E-05 5E-10 76.2 5.1 35 128-162 152-186 (359)
184 3ozx_A RNAse L inhibitor; ATP 97.8 7.9E-06 2.7E-10 82.1 3.4 33 130-162 22-54 (538)
185 3ake_A Cytidylate kinase; CMP 97.8 0.00062 2.1E-08 58.6 15.0 68 246-315 137-207 (208)
186 2gza_A Type IV secretion syste 97.8 2.1E-05 7.1E-10 75.1 5.4 38 128-166 170-207 (361)
187 2grj_A Dephospho-COA kinase; T 97.7 0.00028 9.6E-09 61.2 11.8 25 132-156 11-35 (192)
188 2yhs_A FTSY, cell division pro 97.7 1.4E-05 4.9E-10 79.0 3.8 35 128-162 288-322 (503)
189 3c8u_A Fructokinase; YP_612366 97.7 1.1E-05 3.6E-10 70.7 2.4 29 131-159 20-48 (208)
190 3cr8_A Sulfate adenylyltranfer 97.7 0.0001 3.6E-09 74.2 9.3 31 132-162 368-398 (552)
191 3asz_A Uridine kinase; cytidin 97.7 1.2E-05 4.1E-10 70.2 2.2 28 131-158 4-31 (211)
192 3e70_C DPA, signal recognition 97.6 1.8E-05 6E-10 74.7 2.8 32 131-162 127-158 (328)
193 3szr_A Interferon-induced GTP- 97.6 2E-06 7E-11 87.7 -4.0 28 135-162 47-75 (608)
194 1uj2_A Uridine-cytidine kinase 97.6 0.00019 6.4E-09 64.6 9.5 27 132-158 21-47 (252)
195 2eyu_A Twitching motility prot 97.6 1.3E-05 4.6E-10 73.0 1.7 33 130-162 22-55 (261)
196 2npi_A Protein CLP1; CLP1-PCF1 97.6 1.1E-05 3.8E-10 79.5 1.0 48 109-162 120-167 (460)
197 2v9p_A Replication protein E1; 97.6 2.4E-05 8.3E-10 73.0 2.8 32 126-157 119-150 (305)
198 2i3b_A HCR-ntpase, human cance 97.6 2E-05 6.8E-10 68.4 1.8 29 133-162 1-29 (189)
199 1ye8_A Protein THEP1, hypothet 97.6 2.7E-05 9.3E-10 66.8 2.5 24 135-158 2-25 (178)
200 2pt7_A CAG-ALFA; ATPase, prote 97.5 5E-05 1.7E-09 71.6 4.3 34 129-162 167-200 (330)
201 1sq5_A Pantothenate kinase; P- 97.5 3.2E-05 1.1E-09 72.1 2.8 32 131-162 78-111 (308)
202 1mky_A Probable GTP-binding pr 97.5 0.00014 4.9E-09 71.0 7.6 91 93-184 108-232 (439)
203 4a74_A DNA repair and recombin 97.5 3.6E-05 1.2E-09 67.5 3.0 30 130-159 22-51 (231)
204 3crm_A TRNA delta(2)-isopenten 97.5 2.9E-05 1E-09 72.9 2.3 54 133-186 5-66 (323)
205 2ehv_A Hypothetical protein PH 97.5 4.7E-05 1.6E-09 67.7 3.2 26 130-155 27-52 (251)
206 3euj_A Chromosome partition pr 97.5 4.5E-05 1.5E-09 75.4 3.3 34 128-162 25-58 (483)
207 2iw3_A Elongation factor 3A; a 97.4 3E-05 1E-09 82.6 1.4 44 122-166 688-731 (986)
208 3r20_A Cytidylate kinase; stru 97.4 0.0023 8E-08 57.1 13.5 26 132-157 8-33 (233)
209 1pui_A ENGB, probable GTP-bind 97.4 6E-05 2.1E-09 65.2 3.0 30 128-157 21-50 (210)
210 2gks_A Bifunctional SAT/APS ki 97.4 0.00017 5.7E-09 72.6 6.3 162 132-316 371-540 (546)
211 2obl_A ESCN; ATPase, hydrolase 97.4 6.1E-05 2.1E-09 71.5 2.9 35 128-162 66-100 (347)
212 2ewv_A Twitching motility prot 97.4 6.7E-05 2.3E-09 71.9 3.2 33 130-162 133-166 (372)
213 1ko7_A HPR kinase/phosphatase; 97.4 4E-05 1.4E-09 71.7 1.5 73 77-156 68-167 (314)
214 2dpy_A FLII, flagellum-specifi 97.4 8.3E-05 2.8E-09 72.8 3.5 35 128-162 152-186 (438)
215 1lw7_A Transcriptional regulat 97.3 6.6E-05 2.3E-09 71.5 2.4 29 133-161 170-198 (365)
216 3ec2_A DNA replication protein 97.3 4E-05 1.4E-09 65.2 0.7 30 130-159 35-64 (180)
217 2h92_A Cytidylate kinase; ross 97.3 0.0024 8.3E-08 55.5 11.8 25 133-157 3-27 (219)
218 3jvv_A Twitching mobility prot 97.3 0.00011 3.7E-09 70.1 3.1 30 131-160 121-150 (356)
219 2qm8_A GTPase/ATPase; G protei 97.3 8.1E-05 2.8E-09 70.3 2.2 35 128-162 50-84 (337)
220 1x6v_B Bifunctional 3'-phospho 97.3 0.00043 1.5E-08 70.6 7.5 26 132-157 51-76 (630)
221 1rz3_A Hypothetical protein rb 97.3 8.3E-05 2.8E-09 64.6 2.0 32 131-162 20-51 (201)
222 2qag_B Septin-6, protein NEDD5 97.3 0.00011 3.6E-09 71.6 2.9 30 128-157 35-66 (427)
223 1p9r_A General secretion pathw 97.2 0.00014 4.9E-09 70.7 3.4 32 131-162 165-196 (418)
224 2f1r_A Molybdopterin-guanine d 97.2 4.7E-05 1.6E-09 65.0 -0.1 27 134-160 3-29 (171)
225 2oap_1 GSPE-2, type II secreti 97.2 0.00019 6.6E-09 71.6 4.2 33 130-162 257-289 (511)
226 2kjq_A DNAA-related protein; s 97.2 0.00012 4.2E-09 60.7 2.3 28 132-159 35-62 (149)
227 3kta_A Chromosome segregation 97.2 0.00023 7.7E-09 60.4 3.5 30 132-162 26-55 (182)
228 3d3q_A TRNA delta(2)-isopenten 97.1 0.00026 8.9E-09 66.9 4.2 53 134-186 8-68 (340)
229 1cr0_A DNA primase/helicase; R 97.1 0.00015 5.3E-09 66.6 2.2 35 128-162 30-64 (296)
230 1ixz_A ATP-dependent metallopr 97.0 0.00013 4.6E-09 65.4 1.0 23 136-158 52-74 (254)
231 3tqc_A Pantothenate kinase; bi 97.0 0.00026 8.9E-09 66.4 2.7 26 133-158 92-117 (321)
232 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00033 1.1E-08 61.2 3.0 29 130-158 20-48 (235)
233 2axn_A 6-phosphofructo-2-kinas 96.9 0.003 1E-07 63.1 10.0 26 132-157 34-59 (520)
234 1iy2_A ATP-dependent metallopr 96.9 0.00019 6.3E-09 65.5 1.1 47 110-158 52-98 (278)
235 2qnr_A Septin-2, protein NEDD5 96.9 0.00021 7.3E-09 66.3 1.5 28 135-162 20-48 (301)
236 1nij_A Hypothetical protein YJ 96.9 0.00031 1E-08 65.7 2.5 24 134-157 5-28 (318)
237 1qhl_A Protein (cell division 96.9 5.4E-05 1.9E-09 67.6 -2.9 29 134-162 28-56 (227)
238 3ux8_A Excinuclease ABC, A sub 96.9 0.00029 9.9E-09 72.6 2.1 26 129-154 344-369 (670)
239 1m8p_A Sulfate adenylyltransfe 96.9 0.0016 5.5E-08 65.8 7.4 27 132-158 395-421 (573)
240 2gj8_A MNME, tRNA modification 96.9 0.00047 1.6E-08 57.9 3.0 26 132-157 3-28 (172)
241 1odf_A YGR205W, hypothetical 3 96.9 0.00038 1.3E-08 64.4 2.5 29 131-159 29-57 (290)
242 1oix_A RAS-related protein RAB 96.9 0.00045 1.5E-08 59.1 2.9 25 134-158 30-54 (191)
243 2x8a_A Nuclear valosin-contain 96.8 0.00047 1.6E-08 63.1 3.0 31 127-159 40-70 (274)
244 1tf7_A KAIC; homohexamer, hexa 96.8 0.00041 1.4E-08 69.4 2.6 34 129-162 35-70 (525)
245 2px0_A Flagellar biosynthesis 96.8 0.00039 1.4E-08 64.4 2.0 32 132-163 104-135 (296)
246 1ni3_A YCHF GTPase, YCHF GTP-b 96.8 0.00082 2.8E-08 64.7 4.2 29 129-157 16-44 (392)
247 1n0w_A DNA repair protein RAD5 96.8 0.00064 2.2E-08 60.0 3.1 27 130-156 21-47 (243)
248 2cvh_A DNA repair and recombin 96.8 0.00073 2.5E-08 58.6 3.4 26 130-155 17-42 (220)
249 2f9l_A RAB11B, member RAS onco 96.8 0.00058 2E-08 58.6 2.7 23 135-157 7-29 (199)
250 1np6_A Molybdopterin-guanine d 96.7 0.00069 2.4E-08 57.8 2.6 26 133-158 6-31 (174)
251 2wji_A Ferrous iron transport 96.7 0.0008 2.7E-08 55.9 2.8 24 134-157 4-27 (165)
252 2qag_C Septin-7; cell cycle, c 96.7 0.00084 2.9E-08 65.2 3.4 24 136-159 34-57 (418)
253 1svm_A Large T antigen; AAA+ f 96.7 0.0008 2.7E-08 64.5 3.2 29 129-157 165-193 (377)
254 2hjg_A GTP-binding protein ENG 96.7 0.00095 3.3E-08 65.1 3.7 94 92-186 108-229 (436)
255 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.00099 3.4E-08 55.2 3.0 23 133-155 23-45 (149)
256 1vma_A Cell division protein F 96.6 0.0013 4.5E-08 61.2 3.9 31 130-160 101-131 (306)
257 3lxx_A GTPase IMAP family memb 96.6 0.0013 4.3E-08 58.4 3.6 30 133-162 29-58 (239)
258 1wb9_A DNA mismatch repair pro 96.6 0.00071 2.4E-08 71.0 2.2 27 131-157 605-631 (800)
259 1pzn_A RAD51, DNA repair and r 96.5 0.0012 4.2E-08 62.5 3.5 28 130-157 128-155 (349)
260 2zej_A Dardarin, leucine-rich 96.5 0.0011 3.7E-08 56.1 2.8 23 135-157 4-26 (184)
261 4aby_A DNA repair protein RECN 96.5 0.00039 1.3E-08 66.9 -0.2 30 128-158 56-85 (415)
262 1nlf_A Regulatory protein REPA 96.5 0.0012 4E-08 60.2 2.8 28 130-157 27-54 (279)
263 2www_A Methylmalonic aciduria 96.5 0.0011 3.9E-08 62.7 2.8 28 132-159 73-100 (349)
264 1in4_A RUVB, holliday junction 96.4 0.0011 3.7E-08 62.2 2.5 25 133-157 51-75 (334)
265 3thx_B DNA mismatch repair pro 96.4 0.00066 2.2E-08 72.1 0.9 34 122-155 662-695 (918)
266 2wjg_A FEOB, ferrous iron tran 96.4 0.0014 4.9E-08 55.1 2.8 24 133-156 7-30 (188)
267 1ega_A Protein (GTP-binding pr 96.4 0.00097 3.3E-08 61.8 1.8 26 132-157 7-32 (301)
268 1a7j_A Phosphoribulokinase; tr 96.4 0.00088 3E-08 61.8 1.4 26 132-157 4-29 (290)
269 1w1w_A Structural maintenance 96.4 0.0017 5.7E-08 63.1 3.3 28 132-159 25-52 (430)
270 3thx_A DNA mismatch repair pro 96.3 0.0011 3.9E-08 70.5 2.1 24 130-153 659-682 (934)
271 2nzj_A GTP-binding protein REM 96.3 0.0025 8.7E-08 52.6 3.9 23 135-157 6-28 (175)
272 1xjc_A MOBB protein homolog; s 96.3 0.0017 5.8E-08 55.1 2.5 26 133-158 4-29 (169)
273 2o8b_B DNA mismatch repair pro 96.3 0.0014 4.6E-08 70.6 2.3 25 133-158 789-813 (1022)
274 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.0021 7.2E-08 61.2 3.0 24 131-155 22-45 (365)
275 3q72_A GTP-binding protein RAD 96.2 0.0029 9.8E-08 51.9 3.5 23 135-157 4-26 (166)
276 3q85_A GTP-binding protein REM 96.2 0.0033 1.1E-07 51.6 3.9 23 135-157 4-26 (169)
277 1ewq_A DNA mismatch repair pro 96.2 0.002 6.8E-08 67.2 2.9 25 133-157 576-600 (765)
278 3m6a_A ATP-dependent protease 96.1 0.002 6.8E-08 64.7 2.6 31 132-162 107-137 (543)
279 3lxw_A GTPase IMAP family memb 96.1 0.0026 8.8E-08 57.0 3.1 26 133-158 21-46 (247)
280 2dyk_A GTP-binding protein; GT 96.1 0.0026 8.9E-08 51.7 2.9 23 135-157 3-25 (161)
281 1zu4_A FTSY; GTPase, signal re 96.1 0.0023 8E-08 59.8 2.9 35 128-162 100-134 (320)
282 1ek0_A Protein (GTP-binding pr 96.1 0.0034 1.2E-07 51.4 3.6 23 135-157 5-27 (170)
283 3qks_A DNA double-strand break 96.1 0.0027 9.3E-08 55.2 3.0 25 132-156 22-46 (203)
284 1z0j_A RAB-22, RAS-related pro 96.1 0.0039 1.3E-07 51.1 3.7 23 135-157 8-30 (170)
285 1ls1_A Signal recognition part 96.1 0.0036 1.2E-07 57.8 3.9 31 132-162 97-127 (295)
286 3pqc_A Probable GTP-binding pr 96.1 0.0043 1.5E-07 52.1 4.1 25 133-157 23-47 (195)
287 2lkc_A Translation initiation 96.0 0.0083 2.8E-07 49.6 5.7 26 132-157 7-32 (178)
288 1bif_A 6-phosphofructo-2-kinas 96.0 0.021 7E-07 56.1 9.3 26 132-157 38-63 (469)
289 1udx_A The GTP-binding protein 96.0 0.0021 7E-08 62.4 2.1 30 129-158 153-182 (416)
290 2o5v_A DNA replication and rep 96.0 0.0026 8.8E-08 60.5 2.6 25 130-155 24-48 (359)
291 2dr3_A UPF0273 protein PH0284; 96.0 0.0031 1.1E-07 55.5 3.0 27 130-156 20-46 (247)
292 3qkt_A DNA double-strand break 96.0 0.0031 1E-07 59.3 3.0 23 132-154 22-44 (339)
293 2qmh_A HPR kinase/phosphorylas 96.0 0.0035 1.2E-07 54.7 3.1 27 131-157 32-58 (205)
294 1z2a_A RAS-related protein RAB 96.0 0.0028 9.7E-08 51.8 2.5 23 135-157 7-29 (168)
295 1kao_A RAP2A; GTP-binding prot 96.0 0.003 1E-07 51.4 2.5 23 135-157 5-27 (167)
296 1r2q_A RAS-related protein RAB 96.0 0.0045 1.5E-07 50.6 3.6 23 134-156 7-29 (170)
297 1p5z_B DCK, deoxycytidine kina 96.0 0.0035 1.2E-07 56.5 3.1 28 131-158 22-49 (263)
298 1lv7_A FTSH; alpha/beta domain 95.9 0.0034 1.2E-07 56.2 2.9 26 133-158 45-70 (257)
299 1wf3_A GTP-binding protein; GT 95.9 0.0041 1.4E-07 57.6 3.5 24 134-157 8-31 (301)
300 1jbk_A CLPB protein; beta barr 95.9 0.0035 1.2E-07 52.2 2.8 26 132-157 42-67 (195)
301 2erx_A GTP-binding protein DI- 95.9 0.0035 1.2E-07 51.4 2.7 22 135-156 5-26 (172)
302 2ged_A SR-beta, signal recogni 95.9 0.0041 1.4E-07 52.5 3.2 26 132-157 47-72 (193)
303 3bos_A Putative DNA replicatio 95.9 0.0035 1.2E-07 54.7 2.8 27 132-158 51-77 (242)
304 2ce2_X GTPase HRAS; signaling 95.9 0.0031 1.1E-07 51.2 2.3 23 135-157 5-27 (166)
305 3tw8_B RAS-related protein RAB 95.9 0.0038 1.3E-07 51.7 2.8 24 134-157 10-33 (181)
306 4dcu_A GTP-binding protein ENG 95.9 0.0069 2.4E-07 59.3 5.1 80 92-172 128-233 (456)
307 1e69_A Chromosome segregation 95.9 0.0037 1.3E-07 58.3 3.0 25 132-157 24-48 (322)
308 3iev_A GTP-binding protein ERA 95.9 0.0045 1.6E-07 57.3 3.6 25 133-157 10-34 (308)
309 1u8z_A RAS-related protein RAL 95.8 0.0036 1.2E-07 51.0 2.5 24 134-157 5-28 (168)
310 3k53_A Ferrous iron transport 95.8 0.0035 1.2E-07 56.8 2.6 24 134-157 4-27 (271)
311 2p67_A LAO/AO transport system 95.8 0.0031 1.1E-07 59.4 2.3 29 130-158 53-81 (341)
312 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.0037 1.3E-07 51.7 2.5 23 135-157 9-31 (177)
313 1g16_A RAS-related protein SEC 95.8 0.0034 1.2E-07 51.4 2.3 23 135-157 5-27 (170)
314 1z08_A RAS-related protein RAB 95.8 0.0039 1.3E-07 51.1 2.6 22 135-156 8-29 (170)
315 2vf7_A UVRA2, excinuclease ABC 95.8 0.0019 6.4E-08 68.0 0.7 32 126-157 516-548 (842)
316 3lda_A DNA repair protein RAD5 95.8 0.0045 1.5E-07 59.7 3.3 25 130-154 175-199 (400)
317 1ky3_A GTP-binding protein YPT 95.8 0.0039 1.3E-07 51.7 2.5 24 134-157 9-32 (182)
318 2ocp_A DGK, deoxyguanosine kin 95.8 0.004 1.4E-07 55.2 2.8 27 132-158 1-27 (241)
319 3cf0_A Transitional endoplasmi 95.8 0.0045 1.6E-07 57.0 3.2 28 131-158 47-74 (301)
320 1c1y_A RAS-related protein RAP 95.8 0.0039 1.3E-07 50.9 2.5 22 135-156 5-26 (167)
321 1fzq_A ADP-ribosylation factor 95.7 0.0041 1.4E-07 52.3 2.5 25 132-156 15-39 (181)
322 2efe_B Small GTP-binding prote 95.7 0.0081 2.8E-07 49.8 4.3 24 134-157 13-36 (181)
323 2fn4_A P23, RAS-related protei 95.7 0.004 1.4E-07 51.6 2.3 23 134-156 10-32 (181)
324 1tf7_A KAIC; homohexamer, hexa 95.7 0.0034 1.2E-07 62.7 2.2 30 130-159 278-307 (525)
325 3clv_A RAB5 protein, putative; 95.7 0.0043 1.5E-07 52.3 2.5 24 134-157 8-31 (208)
326 1svi_A GTP-binding protein YSX 95.7 0.0038 1.3E-07 52.7 2.2 25 132-156 22-46 (195)
327 1z0f_A RAB14, member RAS oncog 95.7 0.0075 2.6E-07 49.8 4.0 24 134-157 16-39 (179)
328 3tkl_A RAS-related protein RAB 95.7 0.0066 2.2E-07 51.2 3.6 23 135-157 18-40 (196)
329 2ygr_A Uvrabc system protein A 95.7 0.0032 1.1E-07 67.0 2.0 27 128-154 663-689 (993)
330 1r8s_A ADP-ribosylation factor 95.7 0.0045 1.6E-07 50.5 2.5 23 135-157 2-24 (164)
331 2hxs_A RAB-26, RAS-related pro 95.7 0.0053 1.8E-07 50.9 2.9 24 134-157 7-30 (178)
332 4dsu_A GTPase KRAS, isoform 2B 95.7 0.0046 1.6E-07 51.7 2.5 23 135-157 6-28 (189)
333 1sxj_E Activator 1 40 kDa subu 95.7 0.0048 1.6E-07 57.6 2.9 27 136-162 39-66 (354)
334 2w58_A DNAI, primosome compone 95.7 0.0053 1.8E-07 52.6 2.9 24 134-157 55-78 (202)
335 1moz_A ARL1, ADP-ribosylation 95.7 0.0039 1.3E-07 52.0 2.0 25 132-156 17-41 (183)
336 3bc1_A RAS-related protein RAB 95.7 0.0046 1.6E-07 51.8 2.5 23 134-156 12-34 (195)
337 3b9p_A CG5977-PA, isoform A; A 95.7 0.0054 1.9E-07 55.9 3.1 27 132-158 53-79 (297)
338 2cxx_A Probable GTP-binding pr 95.7 0.0042 1.4E-07 52.1 2.2 23 135-157 3-25 (190)
339 1upt_A ARL1, ADP-ribosylation 95.7 0.0047 1.6E-07 50.7 2.5 24 133-156 7-30 (171)
340 3k1j_A LON protease, ATP-depen 95.6 0.0066 2.3E-07 61.6 3.9 31 131-161 58-88 (604)
341 2oil_A CATX-8, RAS-related pro 95.6 0.0049 1.7E-07 52.1 2.5 24 134-157 26-49 (193)
342 3dz8_A RAS-related protein RAB 95.6 0.0074 2.5E-07 51.0 3.6 24 134-157 24-47 (191)
343 1f6b_A SAR1; gtpases, N-termin 95.6 0.0042 1.4E-07 53.2 2.0 24 133-156 25-48 (198)
344 3cbq_A GTP-binding protein REM 95.6 0.0055 1.9E-07 52.4 2.7 23 134-156 24-46 (195)
345 2y8e_A RAB-protein 6, GH09086P 95.6 0.0048 1.6E-07 51.0 2.3 23 134-156 15-37 (179)
346 2a5j_A RAS-related protein RAB 95.6 0.01 3.5E-07 50.1 4.3 24 134-157 22-45 (191)
347 2dhr_A FTSH; AAA+ protein, hex 95.5 0.0036 1.2E-07 62.2 1.5 24 135-158 66-89 (499)
348 3ihw_A Centg3; RAS, centaurin, 95.5 0.0057 1.9E-07 51.7 2.6 23 134-156 21-43 (184)
349 2g6b_A RAS-related protein RAB 95.5 0.0056 1.9E-07 50.8 2.5 24 134-157 11-34 (180)
350 2gf9_A RAS-related protein RAB 95.5 0.0093 3.2E-07 50.2 3.9 24 134-157 23-46 (189)
351 1sxj_C Activator 1 40 kDa subu 95.5 0.005 1.7E-07 57.6 2.4 23 136-158 49-71 (340)
352 2p65_A Hypothetical protein PF 95.5 0.0045 1.6E-07 51.5 1.9 27 132-158 42-68 (187)
353 3con_A GTPase NRAS; structural 95.5 0.0056 1.9E-07 51.5 2.5 24 133-156 21-44 (190)
354 2fg5_A RAB-22B, RAS-related pr 95.5 0.0074 2.5E-07 51.1 3.2 24 134-157 24-47 (192)
355 1x3s_A RAS-related protein RAB 95.5 0.0088 3E-07 50.2 3.7 24 134-157 16-39 (195)
356 2r6f_A Excinuclease ABC subuni 95.5 0.003 1E-07 67.0 0.8 27 128-154 645-671 (972)
357 2p5s_A RAS and EF-hand domain 95.5 0.011 3.8E-07 50.3 4.3 26 132-157 27-52 (199)
358 2cjw_A GTP-binding protein GEM 95.5 0.0058 2E-07 52.1 2.5 22 135-156 8-29 (192)
359 3b1v_A Ferrous iron uptake tra 95.5 0.0064 2.2E-07 55.4 2.9 24 134-157 4-27 (272)
360 4dhe_A Probable GTP-binding pr 95.5 0.0052 1.8E-07 53.2 2.2 26 132-157 28-53 (223)
361 1z06_A RAS-related protein RAB 95.5 0.012 3.9E-07 49.6 4.3 23 134-156 21-43 (189)
362 2a9k_A RAS-related protein RAL 95.5 0.006 2.1E-07 50.8 2.5 24 134-157 19-42 (187)
363 2bcg_Y Protein YP2, GTP-bindin 95.5 0.0097 3.3E-07 50.8 3.9 24 134-157 9-32 (206)
364 1m2o_B GTP-binding protein SAR 95.5 0.0062 2.1E-07 51.7 2.6 25 133-157 23-47 (190)
365 1ksh_A ARF-like protein 2; sma 95.5 0.0067 2.3E-07 50.8 2.7 26 132-157 17-42 (186)
366 2bme_A RAB4A, RAS-related prot 95.5 0.0056 1.9E-07 51.2 2.3 24 134-157 11-34 (186)
367 2qtf_A Protein HFLX, GTP-bindi 95.4 0.0062 2.1E-07 57.9 2.7 25 134-158 180-204 (364)
368 3h4m_A Proteasome-activating n 95.4 0.0078 2.7E-07 54.4 3.2 27 132-158 50-76 (285)
369 2bov_A RAla, RAS-related prote 95.4 0.0064 2.2E-07 51.7 2.5 24 134-157 15-38 (206)
370 2h57_A ADP-ribosylation factor 95.4 0.007 2.4E-07 51.0 2.7 26 132-157 20-45 (190)
371 1nrj_B SR-beta, signal recogni 95.4 0.008 2.7E-07 51.8 3.1 25 133-157 12-36 (218)
372 1m7b_A RND3/RHOE small GTP-bin 95.4 0.0061 2.1E-07 51.2 2.3 23 134-156 8-30 (184)
373 3kkq_A RAS-related protein M-R 95.4 0.0066 2.3E-07 50.6 2.5 23 134-156 19-41 (183)
374 3t1o_A Gliding protein MGLA; G 95.4 0.0073 2.5E-07 50.7 2.7 26 134-159 15-40 (198)
375 3iby_A Ferrous iron transport 95.4 0.007 2.4E-07 54.6 2.7 24 134-157 2-25 (256)
376 2il1_A RAB12; G-protein, GDP, 95.4 0.0074 2.5E-07 51.2 2.7 23 135-157 28-50 (192)
377 1mh1_A RAC1; GTP-binding, GTPa 95.4 0.0069 2.3E-07 50.4 2.5 23 134-156 6-28 (186)
378 2wsm_A Hydrogenase expression/ 95.4 0.0071 2.4E-07 52.4 2.7 25 133-157 30-54 (221)
379 1vg8_A RAS-related protein RAB 95.3 0.007 2.4E-07 51.6 2.5 24 134-157 9-32 (207)
380 1zbd_A Rabphilin-3A; G protein 95.3 0.0073 2.5E-07 51.4 2.6 23 135-157 10-32 (203)
381 2qu8_A Putative nucleolar GTP- 95.3 0.0074 2.5E-07 52.8 2.7 25 132-156 28-52 (228)
382 4bas_A ADP-ribosylation factor 95.3 0.0079 2.7E-07 50.8 2.8 26 132-157 16-41 (199)
383 3t34_A Dynamin-related protein 95.3 0.0084 2.9E-07 56.6 3.2 23 134-156 35-57 (360)
384 1h65_A Chloroplast outer envel 95.3 0.0085 2.9E-07 54.2 3.1 24 134-157 40-63 (270)
385 2ga8_A Hypothetical 39.9 kDa p 95.3 0.0076 2.6E-07 57.1 2.8 27 132-158 21-49 (359)
386 3tqf_A HPR(Ser) kinase; transf 95.3 0.0073 2.5E-07 51.4 2.4 26 131-156 14-39 (181)
387 2gf0_A GTP-binding protein DI- 95.3 0.007 2.4E-07 51.1 2.3 23 134-156 9-31 (199)
388 2xtp_A GTPase IMAP family memb 95.3 0.0074 2.5E-07 54.0 2.5 25 133-157 22-46 (260)
389 2e87_A Hypothetical protein PH 95.3 0.0091 3.1E-07 56.4 3.2 26 132-157 166-191 (357)
390 3t5d_A Septin-7; GTP-binding p 95.2 0.008 2.7E-07 54.5 2.7 23 135-157 10-32 (274)
391 1njg_A DNA polymerase III subu 95.2 0.0083 2.8E-07 51.8 2.7 26 133-158 45-70 (250)
392 1l8q_A Chromosomal replication 95.2 0.0069 2.4E-07 56.1 2.3 26 132-157 36-61 (324)
393 3t5g_A GTP-binding protein RHE 95.2 0.0077 2.6E-07 50.1 2.4 23 134-156 7-29 (181)
394 3llu_A RAS-related GTP-binding 95.2 0.0091 3.1E-07 50.8 2.9 27 132-158 19-45 (196)
395 2iwr_A Centaurin gamma 1; ANK 95.2 0.006 2.1E-07 50.7 1.7 23 134-156 8-30 (178)
396 3oes_A GTPase rhebl1; small GT 95.2 0.0073 2.5E-07 51.5 2.3 25 133-157 24-48 (201)
397 3bwd_D RAC-like GTP-binding pr 95.2 0.0082 2.8E-07 49.9 2.5 25 133-157 8-32 (182)
398 1zd9_A ADP-ribosylation factor 95.2 0.0081 2.8E-07 50.7 2.5 23 134-156 23-45 (188)
399 2atv_A RERG, RAS-like estrogen 95.2 0.0083 2.8E-07 50.9 2.5 24 133-156 28-51 (196)
400 3n70_A Transport activator; si 95.2 0.01 3.5E-07 48.3 3.0 26 132-157 23-48 (145)
401 3c5c_A RAS-like protein 12; GD 95.2 0.0083 2.8E-07 50.7 2.5 23 134-156 22-44 (187)
402 2fv8_A H6, RHO-related GTP-bin 95.2 0.0067 2.3E-07 52.1 2.0 26 132-157 24-49 (207)
403 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.01 3.4E-07 52.8 3.2 27 132-158 38-64 (262)
404 2o52_A RAS-related protein RAB 95.2 0.008 2.7E-07 51.4 2.4 23 134-156 26-48 (200)
405 1jal_A YCHF protein; nucleotid 95.2 0.012 4.1E-07 56.0 3.8 25 133-157 2-26 (363)
406 3hr8_A Protein RECA; alpha and 95.2 0.0085 2.9E-07 56.9 2.7 28 131-158 59-86 (356)
407 1j8m_F SRP54, signal recogniti 95.1 0.012 4.2E-07 54.3 3.7 28 132-159 97-124 (297)
408 1zj6_A ADP-ribosylation factor 95.1 0.0085 2.9E-07 50.4 2.4 25 132-156 15-39 (187)
409 1knx_A Probable HPR(Ser) kinas 95.1 0.033 1.1E-06 51.8 6.6 26 131-156 145-170 (312)
410 3reg_A RHO-like small GTPase; 95.1 0.0088 3E-07 50.6 2.5 24 134-157 24-47 (194)
411 2fu5_C RAS-related protein RAB 95.1 0.0066 2.3E-07 50.6 1.7 23 134-156 9-31 (183)
412 3cph_A RAS-related protein SEC 95.1 0.0088 3E-07 51.2 2.5 24 133-156 20-43 (213)
413 2ffh_A Protein (FFH); SRP54, s 95.1 0.014 4.9E-07 56.6 4.2 29 132-160 97-125 (425)
414 2ew1_A RAS-related protein RAB 95.1 0.0082 2.8E-07 51.7 2.3 23 134-156 27-49 (201)
415 2h17_A ADP-ribosylation factor 95.1 0.0075 2.6E-07 50.5 1.9 26 132-157 20-45 (181)
416 2ohf_A Protein OLA1, GTP-bindi 95.1 0.011 3.9E-07 56.8 3.4 27 130-156 19-45 (396)
417 4djt_A GTP-binding nuclear pro 95.1 0.0079 2.7E-07 51.9 2.0 23 134-156 12-34 (218)
418 3co5_A Putative two-component 95.1 0.011 3.7E-07 48.1 2.7 26 132-157 26-51 (143)
419 2b6h_A ADP-ribosylation factor 95.0 0.0096 3.3E-07 50.6 2.5 25 132-156 28-52 (192)
420 4fcw_A Chaperone protein CLPB; 95.0 0.0089 3E-07 54.6 2.4 26 134-159 48-73 (311)
421 2qby_A CDC6 homolog 1, cell di 95.0 0.0095 3.2E-07 55.7 2.6 28 131-158 43-70 (386)
422 3a1s_A Iron(II) transport prot 95.0 0.011 3.8E-07 53.3 2.9 24 134-157 6-29 (258)
423 2fh5_B SR-beta, signal recogni 95.0 0.0098 3.4E-07 51.1 2.5 25 133-157 7-31 (214)
424 2f7s_A C25KG, RAS-related prot 95.0 0.011 3.6E-07 51.0 2.7 24 134-157 26-49 (217)
425 3t15_A Ribulose bisphosphate c 95.0 0.01 3.5E-07 54.5 2.7 27 132-158 35-61 (293)
426 2hf9_A Probable hydrogenase ni 95.0 0.01 3.5E-07 51.5 2.6 25 133-157 38-62 (226)
427 2q3h_A RAS homolog gene family 95.0 0.011 3.7E-07 50.2 2.6 25 132-156 19-43 (201)
428 3kl4_A SRP54, signal recogniti 95.0 0.0079 2.7E-07 58.6 1.9 28 132-159 96-123 (433)
429 3cpj_B GTP-binding protein YPT 95.0 0.02 6.7E-07 49.8 4.3 23 135-157 15-37 (223)
430 2g3y_A GTP-binding protein GEM 95.0 0.011 3.8E-07 51.6 2.7 23 134-156 38-60 (211)
431 2j1l_A RHO-related GTP-binding 94.9 0.01 3.6E-07 51.3 2.5 23 134-156 35-57 (214)
432 1gwn_A RHO-related GTP-binding 94.9 0.0098 3.3E-07 51.3 2.3 24 134-157 29-52 (205)
433 4dcu_A GTP-binding protein ENG 94.9 0.0088 3E-07 58.5 2.1 25 133-157 23-47 (456)
434 2qag_A Septin-2, protein NEDD5 94.9 0.0093 3.2E-07 56.6 2.3 23 135-157 39-61 (361)
435 1fnn_A CDC6P, cell division co 94.9 0.012 4.1E-07 55.3 3.0 25 135-159 46-70 (389)
436 3def_A T7I23.11 protein; chlor 94.9 0.013 4.5E-07 52.7 3.1 25 133-157 36-60 (262)
437 3syl_A Protein CBBX; photosynt 94.9 0.011 3.8E-07 54.0 2.6 26 132-157 66-91 (309)
438 1ypw_A Transitional endoplasmi 94.8 0.013 4.5E-07 61.5 3.4 30 130-159 235-264 (806)
439 2x77_A ADP-ribosylation factor 94.8 0.01 3.5E-07 49.9 2.0 24 133-156 22-45 (189)
440 3auy_A DNA double-strand break 94.8 0.012 4.2E-07 55.8 2.8 23 132-154 24-46 (371)
441 3gee_A MNME, tRNA modification 94.8 0.02 7E-07 56.4 4.4 54 132-186 232-287 (476)
442 2atx_A Small GTP binding prote 94.8 0.012 4.1E-07 49.7 2.3 23 134-156 19-41 (194)
443 2hjg_A GTP-binding protein ENG 94.7 0.015 5.2E-07 56.4 3.3 25 134-158 4-28 (436)
444 2chg_A Replication factor C sm 94.7 0.014 4.9E-07 49.6 2.8 24 134-157 39-62 (226)
445 1jwy_B Dynamin A GTPase domain 94.7 0.013 4.4E-07 53.8 2.6 26 132-157 23-48 (315)
446 3hws_A ATP-dependent CLP prote 94.7 0.014 4.8E-07 55.1 2.9 27 132-158 50-76 (363)
447 3i8s_A Ferrous iron transport 94.7 0.014 4.8E-07 53.0 2.8 24 134-157 4-27 (274)
448 2gco_A H9, RHO-related GTP-bin 94.7 0.012 4.2E-07 50.2 2.3 24 134-157 26-49 (201)
449 3gj0_A GTP-binding nuclear pro 94.7 0.0091 3.1E-07 51.7 1.4 22 134-155 16-37 (221)
450 1ofh_A ATP-dependent HSL prote 94.7 0.013 4.6E-07 53.2 2.6 27 132-158 49-75 (310)
451 3pih_A Uvrabc system protein A 94.7 0.011 3.6E-07 62.9 2.1 23 128-150 605-627 (916)
452 2aka_B Dynamin-1; fusion prote 94.6 0.012 4.2E-07 53.4 2.2 26 132-157 25-50 (299)
453 1g8f_A Sulfate adenylyltransfe 94.6 0.012 4E-07 58.6 2.2 27 132-158 394-420 (511)
454 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.017 5.7E-07 53.8 3.1 26 132-157 44-69 (322)
455 2hup_A RAS-related protein RAB 94.6 0.014 4.8E-07 49.9 2.3 23 134-156 30-52 (201)
456 3uk6_A RUVB-like 2; hexameric 94.6 0.014 4.9E-07 54.7 2.5 27 132-158 69-95 (368)
457 1sky_E F1-ATPase, F1-ATP synth 94.5 0.017 5.9E-07 56.7 3.1 29 130-158 148-176 (473)
458 2dby_A GTP-binding protein; GD 94.5 0.014 4.9E-07 55.5 2.5 23 135-157 3-25 (368)
459 2yc2_C IFT27, small RAB-relate 94.5 0.0074 2.5E-07 51.3 0.4 23 134-156 21-43 (208)
460 4gzl_A RAS-related C3 botulinu 94.5 0.015 5.1E-07 49.9 2.3 25 132-156 29-53 (204)
461 3q3j_B RHO-related GTP-binding 94.5 0.016 5.5E-07 50.2 2.5 25 132-156 26-50 (214)
462 3ice_A Transcription terminati 94.4 0.022 7.6E-07 54.6 3.4 29 129-157 170-198 (422)
463 2j0v_A RAC-like GTP-binding pr 94.4 0.016 5.5E-07 49.7 2.3 23 134-156 10-32 (212)
464 3l0i_B RAS-related protein RAB 94.4 0.0086 2.9E-07 51.0 0.5 24 134-157 34-57 (199)
465 1f5n_A Interferon-induced guan 94.4 0.021 7.2E-07 57.8 3.4 24 134-157 39-62 (592)
466 1d2n_A N-ethylmaleimide-sensit 94.4 0.016 5.4E-07 52.2 2.2 26 132-157 63-88 (272)
467 3r7w_A Gtpase1, GTP-binding pr 94.4 0.02 6.8E-07 52.9 2.9 25 133-157 3-27 (307)
468 2zr9_A Protein RECA, recombina 94.3 0.02 6.9E-07 54.1 3.0 27 131-157 59-85 (349)
469 2qgz_A Helicase loader, putati 94.3 0.022 7.7E-07 52.7 3.2 25 133-157 152-176 (308)
470 2z4s_A Chromosomal replication 94.3 0.018 6.1E-07 56.1 2.6 25 133-157 130-154 (440)
471 2r62_A Cell division protease 94.2 0.0095 3.2E-07 53.4 0.5 26 133-158 44-69 (268)
472 3eie_A Vacuolar protein sortin 94.2 0.024 8.1E-07 52.6 3.1 27 132-158 50-76 (322)
473 2orw_A Thymidine kinase; TMTK, 94.2 0.025 8.5E-07 48.3 3.0 25 132-156 2-26 (184)
474 1mky_A Probable GTP-binding pr 94.2 0.022 7.6E-07 55.3 3.0 37 135-172 3-39 (439)
475 2v1u_A Cell division control p 94.2 0.018 6.2E-07 53.9 2.3 26 132-157 43-68 (387)
476 1tue_A Replication protein E1; 94.2 0.021 7.3E-07 49.9 2.5 26 132-157 57-82 (212)
477 3p32_A Probable GTPase RV1496/ 94.1 0.023 7.8E-07 53.6 2.9 26 132-157 78-103 (355)
478 1wxq_A GTP-binding protein; st 94.1 0.02 6.9E-07 55.0 2.6 23 135-157 2-24 (397)
479 1um8_A ATP-dependent CLP prote 94.1 0.023 7.9E-07 53.7 2.9 27 132-158 71-97 (376)
480 3d8b_A Fidgetin-like protein 1 94.1 0.025 8.7E-07 53.3 3.1 27 132-158 116-142 (357)
481 4ag6_A VIRB4 ATPase, type IV s 94.1 0.024 8.1E-07 54.1 2.9 28 132-159 34-61 (392)
482 3geh_A MNME, tRNA modification 94.1 0.017 5.8E-07 56.7 1.9 54 132-186 223-278 (462)
483 1v5w_A DMC1, meiotic recombina 94.0 0.026 9.1E-07 53.0 3.1 27 130-156 119-145 (343)
484 2v3c_C SRP54, signal recogniti 94.0 0.019 6.4E-07 55.9 2.1 26 133-158 99-124 (432)
485 2bjv_A PSP operon transcriptio 94.0 0.028 9.7E-07 50.2 3.1 26 133-158 29-54 (265)
486 4b4t_K 26S protease regulatory 94.0 0.028 9.5E-07 54.6 3.3 27 132-158 205-231 (428)
487 2ce7_A Cell division protein F 94.0 0.025 8.7E-07 55.7 3.0 26 133-158 49-74 (476)
488 3pfi_A Holliday junction ATP-d 93.9 0.027 9.4E-07 52.1 2.9 26 133-158 55-80 (338)
489 3dm5_A SRP54, signal recogniti 93.9 0.023 7.9E-07 55.4 2.5 27 132-158 99-125 (443)
490 4b4t_M 26S protease regulatory 93.9 0.03 1E-06 54.5 3.2 27 132-158 214-240 (434)
491 3llm_A ATP-dependent RNA helic 93.9 0.032 1.1E-06 49.2 3.1 24 131-154 74-97 (235)
492 1sxj_D Activator 1 41 kDa subu 93.8 0.022 7.6E-07 52.8 2.2 23 135-157 60-82 (353)
493 3th5_A RAS-related C3 botulinu 92.8 0.011 3.9E-07 50.4 0.0 24 133-156 30-53 (204)
494 4b4t_L 26S protease subunit RP 93.7 0.033 1.1E-06 54.2 3.2 28 132-159 214-241 (437)
495 1g41_A Heat shock protein HSLU 93.7 0.034 1.1E-06 54.3 3.2 28 132-159 49-76 (444)
496 2qby_B CDC6 homolog 3, cell di 93.6 0.032 1.1E-06 52.4 2.9 26 132-157 44-69 (384)
497 2qp9_X Vacuolar protein sortin 93.6 0.029 9.8E-07 53.0 2.6 27 132-158 83-109 (355)
498 2x2e_A Dynamin-1; nitration, h 93.6 0.028 9.7E-07 52.9 2.4 26 132-157 30-55 (353)
499 4b4t_J 26S protease regulatory 93.5 0.033 1.1E-06 53.6 2.7 28 132-159 181-208 (405)
500 2r44_A Uncharacterized protein 93.5 0.023 7.7E-07 52.7 1.5 28 132-159 45-72 (331)
No 1
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=100.00 E-value=1e-32 Score=241.90 Aligned_cols=181 Identities=49% Similarity=0.875 Sum_probs=168.0
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCCc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTS 213 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~~ 213 (346)
++++|+||||||||||++.|....+..++.+++||||+++.++.+|.+|+|.+.+.|..++.++.|+|+.++++++||++
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 67999999999999999999988876778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEecHHHHHHHHcCC-CCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Q 019061 214 VEAVEAVADAGKRCILDIDVQGARSVRASP-LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (346)
Q Consensus 214 ~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~-~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~ 292 (346)
.+.++..+..|+.+++|++++++.+++... ..+.+||+.+|+.++|.+||..|+.++++.+++||..+..++.+.. ..
T Consensus 82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~-~~ 160 (186)
T 1ex7_A 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-TG 160 (186)
T ss_dssp HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred cceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcc-cc
Confidence 999999999999999999999999998764 4788999999999999999999999999999999999998887642 35
Q ss_pred CceEEEcCCCHHHHHHHHHHHHH
Q 019061 293 IFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 293 ~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
.||.++.|++++.++++|.++|.
T Consensus 161 ~fD~vIvNddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 161 AHDKVIVNDDLDKAYKELKDFIF 183 (186)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT
T ss_pred CCcEEEECcCHHHHHHHHHHHHH
Confidence 68999999999999999998874
No 2
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.95 E-value=9.1e-29 Score=232.71 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=118.3
Q ss_pred CCCCCceeccEEEEEecC-CeeEEEEEeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhccccCCCCeeE
Q 019061 28 DCETTTVIGDKTYVIAGS-DESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCL 100 (346)
Q Consensus 28 ~~~~~~~vGD~v~~~~~~-~~~~i~~i~~R~~~~l~rp~van~~------~~~~p~~~~~~l~~dr~l~~~~~~~~~~~i 100 (346)
+++..|+|||||.|+..+ ++|+|++|+|| +|.|+||.+||+| ++.+|.++..+| ||||++++..+++|+|
T Consensus 46 ~~~~~~~vGD~V~~~~~~~~~~~i~~i~~R-~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i--~r~L~~~~~~~~~~vi 122 (307)
T 1t9h_A 46 KNKITPLVGDYVVYQAENDKEGYLMEIKER-TNELIRPPICNVDQAVLVFSAVQPSFSTALL--DRFLVLVEANDIQPII 122 (307)
T ss_dssp SCCCCCCBTCEEEEECCTTSCEEEEEECCC-SCEETTTTEECCCEEEEEEESTTTTCCHHHH--HHHHHHHHTTTCEEEE
T ss_pred ccCCCCCCCeEEEEEEcCCCceEEEEEcch-hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHH--HHHHHHHHHCCCCEEE
Confidence 345679999999999754 58999999999 8999999999999 677799999999 9999999999999999
Q ss_pred EEeCCCh---HH----HHHHH---HHcCCeEEEeccC--------ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 101 WFLEVDT---PY----VREQK---KVVGAEVVAWSKG--------VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 101 ~~~k~D~---~~----~~~~~---~~~g~~v~~~~~~--------~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
++||+|. +. ++.+. +..||+++.+|+. ....+|++++|+||||||||||+|+|.+...+..|
T Consensus 123 vlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G 202 (307)
T 1t9h_A 123 CITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTN 202 (307)
T ss_dssp EEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC-------
T ss_pred EEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHHHHhccccccccc
Confidence 9999993 22 34444 4569999988743 23468999999999999999999999999888777
Q ss_pred ceee-------ecCCcccccccCCeeEEeeChh
Q 019061 163 FSVS-------HTTRAPRAMEKDGVHYHFTERS 188 (346)
Q Consensus 163 ~~i~-------~ttr~~~~~~~~g~~y~f~s~~ 188 (346)
.++ |||+........ .+|+++++.
T Consensus 203 -~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg 233 (307)
T 1t9h_A 203 -EISEHLGRGKHTTRHVELIHTS-GGLVADTPG 233 (307)
T ss_dssp -------------CCCCCEEEET-TEEEESSCS
T ss_pred -ceeeecCCCcccccHHHHhhcC-CEEEecCCC
Confidence 443 677665443333 568877653
No 3
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.95 E-value=2.3e-27 Score=209.45 Aligned_cols=183 Identities=32% Similarity=0.506 Sum_probs=155.7
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhcc
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~ 208 (346)
...+|++++|+||||||||||++.|.+.++..+...+++|||.++.++.+|..|+|.+.+.|..++.++.|+++.++.++
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n 94 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGN 94 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhce
Confidence 35689999999999999999999999987655556899999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Q 019061 209 LYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (346)
Q Consensus 209 ~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~ 288 (346)
+||++.+.+++.++.|+.+++|++++++++++...+.+++||+.||+. .++.++.+.+.+|++....+.
T Consensus 95 ~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~--------~~~~e~~~~i~~r~~~~~~~~--- 163 (197)
T 3ney_A 95 MFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQ--------GTQTEALQQLQKDSEAIRSQY--- 163 (197)
T ss_dssp EEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCB--------SSCCHHHHHHHHHHHHHHHHH---
T ss_pred ecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCc--------cccchHHHHHHHHHHHHHHhh---
Confidence 999999999999999999999999999999988888899999999975 244444566777775543222
Q ss_pred cCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCcee
Q 019061 289 KSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLI 325 (346)
Q Consensus 289 ~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~ 325 (346)
...||.++.|++++.++++|..+|..+.. +++|+
T Consensus 164 --~~~fd~vivNd~l~~a~~~l~~ii~~~~~-~pqWv 197 (197)
T 3ney_A 164 --AHYFDLSLVNNGVDETLKKLQEAFDQACS-SPQWV 197 (197)
T ss_dssp --GGGCSEEEEESCHHHHHHHHHHHHHHCCC-CCC--
T ss_pred --ccCCCEEEECCCHHHHHHHHHHHHHHccC-CCCCC
Confidence 23589999999999999999999988865 46664
No 4
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.94 E-value=1.6e-27 Score=208.42 Aligned_cols=182 Identities=48% Similarity=0.860 Sum_probs=136.1
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~ 212 (346)
|++++|+||||||||||+++|.+.+++..|..+++|||.++.++.+|.+|+|++...|..+...+.++++..+.+++||.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 57899999999999999999999998778888999999999888889999999999998888888999999999999999
Q ss_pred cHHHHHHHHHhCCceEEEecHHHHHHHHc-CCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Q 019061 213 SVEAVEAVADAGKRCILDIDVQGARSVRA-SPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (346)
Q Consensus 213 ~~~~i~~~~~~~~~~iLD~~~~~~~~l~~-~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~ 291 (346)
+.+.+++.++.++.+++|+++++...++. ......+||+.+|+.+.+++|+..|+.++++.+++|+..+..++.+.. .
T Consensus 81 ~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~-~ 159 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-T 159 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC----------------------------------C
T ss_pred cHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc-c
Confidence 99889999999999999999999999988 677888999999999999999999999999999999999887766532 3
Q ss_pred CCceEEEcCCCHHHHHHHHHHHHH
Q 019061 292 GIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 292 ~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
..+|.++.|++++++.+++.+++.
T Consensus 160 ~~~d~vi~nd~~~~a~~~l~~~i~ 183 (186)
T 3a00_A 160 GAHDKVIVNDDLDKAYKELKDFIF 183 (186)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHT
T ss_pred cCCcEEEECcCHHHHHHHHHHHHH
Confidence 568999999999999999888774
No 5
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.94 E-value=6.4e-26 Score=203.89 Aligned_cols=184 Identities=41% Similarity=0.592 Sum_probs=162.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCC--CccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~--~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~ 207 (346)
..+|++++|+||||||||||+++|.+..++ ..| .+++|||+++..+..+.+|+|++...|..+...+.|.|+..+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g-~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV-SVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE-CCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEE-EEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 468999999999999999999999999875 345 88899998877777889999999999998888888999998888
Q ss_pred cccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 019061 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (346)
Q Consensus 208 ~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~ 287 (346)
+.||++.+.+.+.++.|+.++||+|+++..+++.......+||+.+|+++.+.+|+..|+.++++.+.+|+..+..++.+
T Consensus 92 ~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~ 171 (219)
T 1s96_A 92 NYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSH 171 (219)
T ss_dssp EEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 88999888888888999999999999999999876667889999999999999999999999999999999998877754
Q ss_pred ccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 288 GKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 288 ~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
+ ..|+.++.|++++++++++..++...
T Consensus 172 ~---~~~d~~i~Nd~l~~a~~~l~~ii~~~ 198 (219)
T 1s96_A 172 Y---AEYDYLIVNDDFDTALTDLKTIIRAE 198 (219)
T ss_dssp G---GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred c---cCCCEEEECcCHHHHHHHHHHHHHHH
Confidence 2 45899999999999999999998654
No 6
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=99.93 E-value=6.7e-26 Score=211.62 Aligned_cols=187 Identities=33% Similarity=0.562 Sum_probs=168.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEee-ChhHHHHHHhccchhhhhhhhccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT-ERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~-s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
..+++++|+||+ |+|+++.|+..++..++.+++||||+++.++.+|.+|+|. +.+.|..++.++.|+|+.++.+++
T Consensus 98 ~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~ 174 (292)
T 3tvt_A 98 NYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNL 174 (292)
T ss_dssp SSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccce
Confidence 467999999994 9999999999998888989999999999999999999997 778899999999999999999999
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~ 289 (346)
||++.+.+++.++.|+.|+||++++++.+++.....+++||+.+|+++.|.+|+..|+.++.+.+.+|+..+..++
T Consensus 175 YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k~e~e~---- 250 (292)
T 3tvt_A 175 YGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEF---- 250 (292)
T ss_dssp EEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHHHHHHH----
T ss_pred eEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHHHHHhh----
Confidence 9999999999999999999999999999999998999999999999999999999998877777777776554443
Q ss_pred CCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceee
Q 019061 290 SSGIFDHILYNDKLEECYENLKVICYCLMQISDNLII 326 (346)
Q Consensus 290 ~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~ 326 (346)
.+.||.++.|+++++++++|..+|..... ++.|++
T Consensus 251 -~~~fD~vIvNddle~a~~~l~~iI~~e~~-~~~WVP 285 (292)
T 3tvt_A 251 -GEYFTGVVQGDTIEEIYSKVKSMIWSQSG-PTIWVP 285 (292)
T ss_dssp -TTTCSEEECCSSHHHHHHHHHHHHHHHTC-SEEEEE
T ss_pred -hhhCCEEEECcCHHHHHHHHHHHHHHhhC-CCeEec
Confidence 34589999999999999999999998864 457776
No 7
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.93 E-value=5.8e-26 Score=202.20 Aligned_cols=184 Identities=42% Similarity=0.665 Sum_probs=159.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~y 210 (346)
.+|++++|+|||||||||++++|.+.+++..+..+++|||+++..+.+|.+|+|.+...|..++..+.|+++..+.+++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 46899999999999999999999999876566688999999999888999999999999998888899999999999999
Q ss_pred CCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Q 019061 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (346)
Q Consensus 211 g~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~ 290 (346)
|++.+.+++.++.++.+++|+++++...++.....+.++|+.+|+.+++.+|+..|+.++++.+++|+..+..++..+
T Consensus 86 g~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~-- 163 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMM-- 163 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHG--
T ss_pred CCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh--
Confidence 999998999999999999999999999998888888899999999999999999999888899999999988766553
Q ss_pred CCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 291 SGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 291 ~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
..++.++.|++++++++++..++...
T Consensus 164 -~~~d~vivN~~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 164 -ASYDYAVVNDVVANAVQKIKGIVETE 189 (208)
T ss_dssp -GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred -ccCCEEEECcCHHHHHHHHHHHHHHH
Confidence 34789999999999999999988764
No 8
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.92 E-value=3.6e-25 Score=211.98 Aligned_cols=138 Identities=22% Similarity=0.217 Sum_probs=112.8
Q ss_pred eeeeccCCCCCceeccEEEEEecC-Ce------eEEEEEeeCCCceEEccc--------ccCCC-----CCCCCCCCccC
Q 019061 22 FSLKSRDCETTTVIGDKTYVIAGS-DE------SIGVKIYDRSTGNWLIPA--------VRGIE-----PRPCKGHSAVL 81 (346)
Q Consensus 22 ~~~~~~~~~~~~~vGD~v~~~~~~-~~------~~i~~i~~R~~~~l~rp~--------van~~-----~~~~p~~~~~~ 81 (346)
+..+.|.+-..|+|||||.|+..+ ++ |+|++|+|| +|.|+||+ +||+| .+..|.++..+
T Consensus 70 ~~~~~r~~~~~~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R-~~~l~R~~~~~~~~~i~anvD~v~iv~a~~P~~~~~~ 148 (358)
T 2rcn_A 70 HRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVKGIVEAVHER-TSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNI 148 (358)
T ss_dssp EEEEECTTCCCCCBTCEEEEECBC-------CCEEEEEECCC-SCEEEEC-----CEEEEECCCEEEEEEESTTTCCHHH
T ss_pred EEEEecCCCCCCCCCcEEEEEeCCCccccccccceEeEEeCC-cCcccCcchhhHHHHHHhcCCEEEEEEeCCCCCCHHH
Confidence 566777766679999999998743 34 999999999 89999986 79988 33469999999
Q ss_pred ccccchhhccccCCCCeeEEEeCCCh---HH---HHHH---HHHcCCeEEEeccC-cc-------CCCCCeEEEEcCCCC
Q 019061 82 LNEDRILVIKKGSSSDDCLWFLEVDT---PY---VREQ---KKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGV 144 (346)
Q Consensus 82 l~~dr~l~~~~~~~~~~~i~~~k~D~---~~---~~~~---~~~~g~~v~~~~~~-~~-------~~~g~~~~l~GpsG~ 144 (346)
| ||||++++..+++|+||+||+|. +. .+.+ .+..||+++.+|+. .. ..+|++++|+|||||
T Consensus 149 i--~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~ 226 (358)
T 2rcn_A 149 I--DRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGV 226 (358)
T ss_dssp H--HHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTS
T ss_pred H--HHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCc
Confidence 9 99999999999999999999993 22 2222 24679999998865 21 248999999999999
Q ss_pred ChHHHHHhhccccC-CCcc
Q 019061 145 GKGTLISMLMKEFP-SMFG 162 (346)
Q Consensus 145 GKsTl~~~L~~~~~-~~~g 162 (346)
|||||+|+|.+... +..|
T Consensus 227 GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 227 GKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp SHHHHHHHHHCCSSCCCCC
T ss_pred cHHHHHHHHhccccccccC
Confidence 99999999999988 7777
No 9
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.92 E-value=1.9e-24 Score=191.04 Aligned_cols=186 Identities=48% Similarity=0.819 Sum_probs=160.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
+|++++|+||||||||||+++|.+.++...|..++||||.++.++.+|.+|.|.+...|..++.++.|+++..+.+++||
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence 68899999999999999999999988767788899999988888888899999998888887778889999889999999
Q ss_pred CcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Q 019061 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~ 291 (346)
.+.+.+.++++.+..+++|.++++..........+.++|+.+|+.+++++|+..|+.++++.+++++..+..++......
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~ 162 (198)
T 1lvg_A 83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEP 162 (198)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGST
T ss_pred CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 98888888888888899999999998887666667779999999999999999999999999999999887665432122
Q ss_pred CCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 292 GIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 292 ~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
..++.++.|++++++++++.+++...
T Consensus 163 ~~~D~iivnd~le~a~~~l~~ii~~~ 188 (198)
T 1lvg_A 163 GLFDLVIINDDLDKAYATLKQALSEE 188 (198)
T ss_dssp TTCSEEEECSSHHHHHHHHHHHTHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999988764
No 10
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=99.91 E-value=2.7e-24 Score=201.43 Aligned_cols=186 Identities=39% Similarity=0.593 Sum_probs=164.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEee-ChhHHHHHHhccchhhhhhhhccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT-ERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~-s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
..+++++|+|| ||+||++.|...++..++.+++||||+++.++.+|.+|+|. +.+.|..++.++.|+|+.++.+++
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~ 179 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 179 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcE
Confidence 46899999999 79999999999887667789999999999999999999999 999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHhc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQG 288 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~-~i~~~ 288 (346)
||++.+.+++.++.|+.|+||++++++.+++.....+++||+.+|+.++|.+ |.+|+ +++.+++|++.+.. ++.+
T Consensus 180 YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~-L~~R~--t~~~i~~rl~~a~~~e~~~- 255 (295)
T 1kjw_A 180 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQEF- 255 (295)
T ss_dssp EEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHH-HCTTS--CHHHHHHHHHHHHHHHHHH-
T ss_pred eeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHH-HHhcC--CHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999999988766677999999999999998 88887 45779999998843 4443
Q ss_pred cCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceee
Q 019061 289 KSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLII 326 (346)
Q Consensus 289 ~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~ 326 (346)
.+.|+.++.|+++++++++|..+|..... .+.|++
T Consensus 256 --~~~fd~vivNd~le~a~~~l~~ii~~~~~-~~~Wvp 290 (295)
T 1kjw_A 256 --TECFSAIVEGDSFEEIYHKVKRVIEDLSG-PYIWVP 290 (295)
T ss_dssp --GGGCSEEECCSSHHHHHHHHHHHHHHHSC-SEEEEE
T ss_pred --cccCeEEEECcCHHHHHHHHHHHHHhccC-CCEEee
Confidence 34589999999999999999999987754 456766
No 11
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.90 E-value=4.7e-24 Score=185.50 Aligned_cols=177 Identities=24% Similarity=0.540 Sum_probs=146.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~y 210 (346)
.+|++++|+||||||||||+++|.+.+++.+...+++|||.++..+.+|.+|+|.+.+.|..++..+.|+++..+.+++|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~y 82 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMY 82 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCccc
Confidence 47899999999999999999999998764344488999999988888899999999988888888889999988889999
Q ss_pred CCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Q 019061 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (346)
Q Consensus 211 g~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~ 290 (346)
|.+.+.+++.++.++.+++|++++++.+++........||+.+|+.+.+.+| ++.+ +|+..+..++... .
T Consensus 83 g~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R--------~~~i-~r~~~~~~~~~~~-~ 152 (180)
T 1kgd_A 83 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNE--------DESL-QRLQKESDILQRT-Y 152 (180)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCC--------SHHH-HHHHHHHHHHHHH-H
T ss_pred cccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhh--------HHHH-HHHHHHHHHHHHh-h
Confidence 9998888889999999999999999999987767788999999987776655 3556 6776665555211 1
Q ss_pred CCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 291 SGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 291 ~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
...++.++.|++++++++++.++|.++
T Consensus 153 ~~~~d~~i~n~~~~~~~~~l~~~i~~~ 179 (180)
T 1kgd_A 153 AHYFDLTIINNEIDETIRHLEEAVELV 179 (180)
T ss_dssp GGGCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred hCCCcEEEECcCHHHHHHHHHHHHHHh
Confidence 345899999999999999999988764
No 12
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.90 E-value=4.1e-23 Score=182.89 Aligned_cols=188 Identities=37% Similarity=0.664 Sum_probs=159.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
..+|++++|+|||||||||+++.|...++......++||||.++.++.+|..|.|.+.+.|..++..+.|+++..+.+++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNF 88 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCe
Confidence 45789999999999999999999998875435557899999999988889899999998888888888999988888889
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCC--CeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPL--DAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~--~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~ 287 (346)
|+...+.+...+..+..+++|+++++...++.... ....||+.+++.+++.+|+..|+.++++.+++|+..++.++..
T Consensus 89 ~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~ 168 (204)
T 2qor_A 89 YGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDE 168 (204)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99998888888889999999999999998877655 5688899888899999999999888889999999988755541
Q ss_pred ccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 288 GKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 288 ~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
. ....++.++.|++++++++++.++|....
T Consensus 169 ~-~~~~~d~vi~n~~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 169 A-DKVGFNYFIVNDDLARTYAELREYLLGSY 198 (204)
T ss_dssp H-HHHTCSEEEECSSHHHHHHHHHHHHHHHC
T ss_pred h-hhccCcEEEECcCHHHHHHHHHHHHHHHh
Confidence 0 12336778888899999999999887653
No 13
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.90 E-value=2e-23 Score=196.37 Aligned_cols=163 Identities=19% Similarity=0.153 Sum_probs=127.6
Q ss_pred ceeeeccCCCCC---ceeccEEEEEec-CCeeEEEEEeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhc
Q 019061 21 GFSLKSRDCETT---TVIGDKTYVIAG-SDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVI 90 (346)
Q Consensus 21 ~~~~~~~~~~~~---~~vGD~v~~~~~-~~~~~i~~i~~R~~~~l~rp~van~~------~~~~p~~~~~~l~~dr~l~~ 90 (346)
.+..+.|.+-.. |+|||||.++.. ++.|+|++|.|| .+.|.||.++|+| .+.+|.+++..+ ||+|..
T Consensus 29 ~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~g~I~~i~er-~~~l~r~~~~naD~vliV~d~~~p~~s~~~l--~~~l~~ 105 (302)
T 2yv5_A 29 TYRGIPRGKVLKKTKIYAGDYVWGEVVDPNTFAIEEVEER-KNLLIRPKVANVDRVIIVETLKMPEFNNYLL--DNMLVV 105 (302)
T ss_dssp EEEEEECSSSTTSSCCCBTCEEEEEEEETTEEEEEEECCC-SCEEETTEEESCCEEEEEECSTTTTCCHHHH--HHHHHH
T ss_pred EEEEEEcCCcccCCCCcCceEEEEEEccCCeEEEEeeCCh-HHHHhHHHHHhcCEEEEEEECCCCCCCHHHH--HHHHHH
Confidence 455555543222 999999999874 468999999999 8999999999998 676788899999 999999
Q ss_pred cccCCCCeeEEEeCCCh--HH----HHH---HHHHcCCeEEEeccC-c-------cCCCCCeEEEEcCCCCChHHHHHhh
Q 019061 91 KKGSSSDDCLWFLEVDT--PY----VRE---QKKVVGAEVVAWSKG-V-------IGNVEKPVVITGPSGVGKGTLISML 153 (346)
Q Consensus 91 ~~~~~~~~~i~~~k~D~--~~----~~~---~~~~~g~~v~~~~~~-~-------~~~~g~~~~l~GpsG~GKsTl~~~L 153 (346)
++..+++++|++||+|. +. .+. ..+..|++++.+|+. . ....|++++|+||||||||||+|+|
T Consensus 106 ~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l 185 (302)
T 2yv5_A 106 YEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRL 185 (302)
T ss_dssp HHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTSSHHHHHHHH
T ss_pred HHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEEEECCCCCCHHHHHHHH
Confidence 98899999999999994 21 222 235679999998875 2 2468999999999999999999999
Q ss_pred ccccCCCccceee-------ecCCcccccccCCeeEEeeChh
Q 019061 154 MKEFPSMFGFSVS-------HTTRAPRAMEKDGVHYHFTERS 188 (346)
Q Consensus 154 ~~~~~~~~g~~i~-------~ttr~~~~~~~~g~~y~f~s~~ 188 (346)
. ...+..| .++ |||+..........+|+++++.
T Consensus 186 ~-~~~~~~G-~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg 225 (302)
T 2yv5_A 186 T-GEELRTQ-EVSEKTERGRHTTTGVRLIPFGKGSFVGDTPG 225 (302)
T ss_dssp H-SCCCCCS-CC---------CCCCEEEEEETTTEEEESSCC
T ss_pred H-HhhCccc-ccccccCCCCCceeeEEEEEcCCCcEEEECcC
Confidence 9 8888777 433 5776654444445789987753
No 14
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.89 E-value=1.8e-22 Score=177.76 Aligned_cols=184 Identities=36% Similarity=0.548 Sum_probs=155.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
+.+|++++|+||||||||||+++|.+.++ .......++++........+.+|+|++...|..+...+.+.++..+.+..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA-EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERH 82 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS-SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEE
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC-CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeeccc
Confidence 34789999999999999999999999875 33334556777766666678899999999888877777888888888888
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~ 289 (346)
|+...+.+.+..+.+..+++|+++++...+.........+++.+|+.+++.+|+..|+.++++.+++|+..+..+..++
T Consensus 83 ~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~- 161 (205)
T 3tr0_A 83 YGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHY- 161 (205)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTTG-
T ss_pred ccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc-
Confidence 9998888888889999999999999998888777788889999999999999999999888889999999887665543
Q ss_pred CCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 290 SSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 290 ~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
..++.|+.|++++++.+++.+++...
T Consensus 162 --~~~d~vi~n~~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 162 --KEFDYLVVNDNFDQAVQNLIHIISAE 187 (205)
T ss_dssp --GGCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred --cCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 44789999999999999999988754
No 15
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.87 E-value=2.5e-21 Score=173.58 Aligned_cols=187 Identities=37% Similarity=0.629 Sum_probs=151.1
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccc---eeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhh
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF---SVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~---~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~ 204 (346)
+.+.+|++++|+||||||||||+++|.+.++ |. .+.++++.++..+.++.+|+|++...|..+...+.++++..
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p---G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 94 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEFP---NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDN 94 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHST---TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhCC---CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhh
Confidence 5567899999999999999999999999883 31 23456665555556788999999998888766677888877
Q ss_pred hhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCC--CCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019061 205 VHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP--LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (346)
Q Consensus 205 ~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~--~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~ 282 (346)
+.++.|+.+...+++.++.+..+++|.++.+.+..+... ..+.++|+.+|++.++++|+..++.++++.+++++..+.
T Consensus 95 ~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 95 YANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 777888888777888888888899999999988887655 556899999999999999999999999999999999887
Q ss_pred HHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 283 EEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 283 ~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
.+..... ...++.|+.++++++++..+..++....
T Consensus 175 ~~~~~~h-~~~~d~iiv~~~~~ea~~~~~~ii~~~~ 209 (218)
T 1z6g_A 175 IELHEAN-LLNFNLSIINDDLTLTYQQLKNYLLNSY 209 (218)
T ss_dssp HHHHHHT-TSCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhhc-ccCCCEEEECCCHHHHHHHHHHHHHHHH
Confidence 6644211 2457999999999999999999887653
No 16
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.86 E-value=3.4e-21 Score=200.81 Aligned_cols=186 Identities=39% Similarity=0.600 Sum_probs=165.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEee-ChhHHHHHHhccchhhhhhhhccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT-ERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~-s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
..+++++|+||+ |+||+++|...++..++.+++||||+++.+|.+|.+|+|. +.+.|..++.++.|+|+.++.+++
T Consensus 529 ~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~ 605 (721)
T 2xkx_A 529 HYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL 605 (721)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence 467999999995 9999999999887668889999999999999999999999 999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHhc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQG 288 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~-~i~~~ 288 (346)
||++.+.+++.++.|+.|+||++++++.+++.....+++||+.+|+.++|++ |..|+ +++.+++|++.+.. ++.+
T Consensus 606 YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R~--t~~~~~~rl~~a~~~e~~~- 681 (721)
T 2xkx_A 606 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQEF- 681 (721)
T ss_pred ceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999999998766677999999999999988 88887 45688999998853 4433
Q ss_pred cCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceee
Q 019061 289 KSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLII 326 (346)
Q Consensus 289 ~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~ 326 (346)
.+.|+++|.|+++++++++|.++|..... ++.|++
T Consensus 682 --~~~fd~vi~Nd~l~~a~~~l~~~i~~~~~-~~~Wvp 716 (721)
T 2xkx_A 682 --TECFSAIVEGDSFEEIYHKVKRVIEDLSG-PYIWVP 716 (721)
T ss_pred --cccCcEEEECcCHHHHHHHHHHHHHhccC-CcEEee
Confidence 45689999999999999999999987754 457776
No 17
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.86 E-value=3.9e-22 Score=179.82 Aligned_cols=187 Identities=34% Similarity=0.494 Sum_probs=137.5
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhc-cccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhh
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLM-KEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~-~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~ 206 (346)
+...+|++++|+|||||||||++++|. +.+++. ...+.++++.+..++..|.+|+|++...|..+...+.+.++..+.
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVF 100 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC----CE-EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-ccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhc
Confidence 445689999999999999999999999 887653 446778888887777788889999998888877777888877788
Q ss_pred ccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCC-CCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 019061 207 GNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP-LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEI 285 (346)
Q Consensus 207 ~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~-~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i 285 (346)
++.|+...+.+.+....+..+++|+++.+...++... .....+|+.+|+.+.+++|+..|+..+++.+++|+.....++
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~ 180 (231)
T 3lnc_A 101 GNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEI 180 (231)
T ss_dssp TEEEEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 8888887777788888899999999999988887655 567789999999999999999998888999999998877665
Q ss_pred HhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 286 KQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 286 ~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
++ ...++.|+.|++++++.+++.+++....
T Consensus 181 ~~---~~~~d~vI~n~~~e~~~~~l~~~i~~~~ 210 (231)
T 3lnc_A 181 SH---CEAYDYVIVNEDIEETADRISNILRAEQ 210 (231)
T ss_dssp TT---GGGSSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred hh---hcCCeEEEECcCHHHHHHHHHHHHHHHh
Confidence 43 3457999999999999999999987653
No 18
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.81 E-value=7.1e-20 Score=161.18 Aligned_cols=185 Identities=39% Similarity=0.676 Sum_probs=122.3
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
..+|++++|+|||||||||++++|.+.+.+..+..+.++++.+......+.+|+|++...+..+...+.++++..+.++.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNY 82 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCee
Confidence 34789999999999999999999999875545545667777655445567889999988888777777888887777778
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~ 289 (346)
|+...+.+...+..+..+++|+...+...++........+++.+|+.+.+.+|+..|++.+.+.+.+|+.....++..+
T Consensus 83 ~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~~- 161 (207)
T 2j41_A 83 YGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMM- 161 (207)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CGGGGG-
T ss_pred cCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcc-
Confidence 8888877887778889999999877776666544567788888888899999999998777788888887765444332
Q ss_pred CCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 290 SSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 290 ~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
..++.++.|++++++.+++.+++...
T Consensus 162 --~~~d~vI~n~~~e~~~~~i~~~l~~~ 187 (207)
T 2j41_A 162 --NLYDYVVVNDEVELAKNRIQCIVEAE 187 (207)
T ss_dssp --GGCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred --ccCCEEEECCCHHHHHHHHHHHHHHh
Confidence 23567777779999999999888765
No 19
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=1.8e-18 Score=153.41 Aligned_cols=183 Identities=39% Similarity=0.658 Sum_probs=138.7
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhc-
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG- 207 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~- 207 (346)
...+|++++|+||||||||||+++|.+.++...+ .+.++++.+......+.+|+|++...|..+...+.+.++..+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~-~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n 94 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHF-SVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGG 94 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEE-CCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGG
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEE-cccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCc
Confidence 4668999999999999999999999998864333 44566665544455788999999888887665556666555555
Q ss_pred -cccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 019061 208 -NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (346)
Q Consensus 208 -~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~ 286 (346)
..|+.+...+++.......++++++..+...++.......++++.+|+...+++|+.+++.+.....++++..+..++.
T Consensus 95 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~ 174 (207)
T 1znw_A 95 LHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELA 174 (207)
T ss_dssp TEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 5577777667766677777888888888877777677778899999999999999999987767778888877665654
Q ss_pred hccCCCCceEEEcCCCHHHHHHHHHHHHH
Q 019061 287 QGKSSGIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 287 ~~~~~~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
.. ..++.++.+|+++++......++.
T Consensus 175 ~~---~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 175 AQ---GDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp GG---GGSSEEEECSSHHHHHHHHHHHHC
T ss_pred hh---ccCcEEEECCCHHHHHHHHHHHHH
Confidence 31 125889999999998877666553
No 20
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=162.19 Aligned_cols=165 Identities=15% Similarity=0.183 Sum_probs=123.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
...+++++|+||||+| |+++|+...+..++ ..||| ++.++.+|.+|+|
T Consensus 221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~---s~~TR-pR~gE~dG~~Y~F------------------------- 268 (468)
T 3shw_A 221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQ---IAKSE-PRDAGTDQRSSGI------------------------- 268 (468)
T ss_dssp CSSCCCEEEESTTHHH---HHHHHHHHCTTTEE---ECCCB-C----------CB-------------------------
T ss_pred CCCCCEEEEECCCHHH---HHHHHHHhCCCcee---eecCC-CCCcccccccCCc-------------------------
Confidence 3478999999999999 99999988776555 24688 8899999998887
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHhc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE-IKQG 288 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~-i~~~ 288 (346)
++.+.+++.++.|+.|+||++++++++++.....+++||+.||+++.|+++...+..++++.+++|++.+.+. ..+
T Consensus 269 --Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~~~- 345 (468)
T 3shw_A 269 --IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNN- 345 (468)
T ss_dssp --CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHH-
T ss_pred --ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhh-
Confidence 5678888999999999999999999999988888999999999999998754443345566788888776432 222
Q ss_pred cCCCCceEEEcCCCH-HHHHHHHHHHHHHhhcccCceeeEeeccc
Q 019061 289 KSSGIFDHILYNDKL-EECYENLKVICYCLMQISDNLIIFLFVTY 332 (346)
Q Consensus 289 ~~~~~~~~Vi~n~~l-e~~~~~l~~iI~~l~~~~~~~~~~~~~~~ 332 (346)
.+.|+++|.|+++ +.++++|..+|..+.. +++|++..|++-
T Consensus 346 --~~~fD~vIvNddl~d~a~~~L~~ii~~~~~-~~~WvP~~~~~~ 387 (468)
T 3shw_A 346 --HHLFTTTINLNSMNDGWYGALKEAIQQQQN-QLVWVSEGKADG 387 (468)
T ss_dssp --GGGCSEEEECBTTBCHHHHHHHHHHHHHHT-SCEEEEC-----
T ss_pred --hccCCEEEECCCcHHHHHHHHHHHHHHhcC-CCEEeCCccccc
Confidence 4568999999999 5999999999998876 578999777643
No 21
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.70 E-value=8.2e-17 Score=156.21 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=128.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~y 210 (346)
..+++++|+|||| +||+++|....+..++ .+||+++.++.+|.+|+|.
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~----~~tr~pR~gE~dG~~Y~Fv------------------------- 277 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQ----IAKSEPRDAGTDQRSSGII------------------------- 277 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEE----ECCCCCCCSSSCCC--CCC-------------------------
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCccccc----cccCCCCCcccCCccCCcC-------------------------
Confidence 4789999999998 8999999988775554 2789999999999999886
Q ss_pred CCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHhcc
Q 019061 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQGK 289 (346)
Q Consensus 211 g~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~-~i~~~~ 289 (346)
+.+.+++.++.|+.|+||++++++++++.....+++||+.||++++|+++...+..++++.+++|++.+.+ +..+
T Consensus 278 --~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e~~~-- 353 (391)
T 3tsz_A 278 --RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNN-- 353 (391)
T ss_dssp --CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHH--
T ss_pred --cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhc--
Confidence 46778888899999999999999999998888899999999999999986443334566677777777642 2222
Q ss_pred CCCCceEEEcCCCHH-HHHHHHHHHHHHhhcccCceee
Q 019061 290 SSGIFDHILYNDKLE-ECYENLKVICYCLMQISDNLII 326 (346)
Q Consensus 290 ~~~~~~~Vi~n~~le-~~~~~l~~iI~~l~~~~~~~~~ 326 (346)
.+.||+++.|++++ .++++|..+|..+.. +++|++
T Consensus 354 -~~~fd~vivNd~l~~~a~~~l~~ii~~~~~-~~~Wvp 389 (391)
T 3tsz_A 354 -HHLFTTTINLNSMNDGWYGALKEAIQQQQN-QLVWVS 389 (391)
T ss_dssp -GGGCSEEEECCTTCCHHHHHHHHHHHHHHH-SEEEEE
T ss_pred -cccCcEEEECCCcHHHHHHHHHHHHHHhcC-CCeecc
Confidence 35689999999998 799999999998865 467775
No 22
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.69 E-value=5.4e-17 Score=152.31 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=117.7
Q ss_pred CCCCceeccEEEEEec-CCeeEEEEEeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhccccCCCCeeEE
Q 019061 29 CETTTVIGDKTYVIAG-SDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLW 101 (346)
Q Consensus 29 ~~~~~~vGD~v~~~~~-~~~~~i~~i~~R~~~~l~rp~van~~------~~~~p~~~~~~l~~dr~l~~~~~~~~~~~i~ 101 (346)
....|.|||+|.+... +++..|.++.+| .+.++|+..+|+| .+.+|.+++..+ ++++..++..+++++|+
T Consensus 45 ~~~~pTiGd~~~~~~~~~~~~~iwD~qer-~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l--~~~l~~~~~~~~piilv 121 (301)
T 1u0l_A 45 QNLKIYVGDRVEYTPDETGSGVIENVLHR-KNLLTKPHVANVDQVILVVTVKMPETSTYII--DKFLVLAEKNELETVMV 121 (301)
T ss_dssp TTCCCCTTCEEEEECCCSSSEEEEEECCC-SCEETTTTEESCCEEEEEECSSTTCCCHHHH--HHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCccEEEEEEcCCCeEEEEEEccc-cceeeccccccCCEEEEEEeCCCCCCCHHHH--HHHHHHHHHCCCCEEEE
Confidence 3456999999998763 347889999999 8999999999988 666777777888 89988777789999999
Q ss_pred EeCCCh--H-H---HHHHHHHcC--CeEEEeccC-c-------cCCCCCeEEEEcCCCCChHHHHHhhccccCCCcccee
Q 019061 102 FLEVDT--P-Y---VREQKKVVG--AEVVAWSKG-V-------IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165 (346)
Q Consensus 102 ~~k~D~--~-~---~~~~~~~~g--~~v~~~~~~-~-------~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i 165 (346)
.||+|. + . .+.+.+.++ +.++..|+. . ....|++++|+||||||||||+|+|.+...+..| .+
T Consensus 122 ~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G-~i 200 (301)
T 1u0l_A 122 INKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVS-EV 200 (301)
T ss_dssp ECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred EeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHHHhccccccccc-ce
Confidence 999994 2 2 334455666 888888876 2 2358999999999999999999999999988877 33
Q ss_pred e-------ecCCcccccccCCeeEEeeChh
Q 019061 166 S-------HTTRAPRAMEKDGVHYHFTERS 188 (346)
Q Consensus 166 ~-------~ttr~~~~~~~~g~~y~f~s~~ 188 (346)
. ++|+..........+|+|+++.
T Consensus 201 ~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 201 SEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp ---------CCCSCCEEECTTSCEEESSCS
T ss_pred ecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 3 4555443333345678888754
No 23
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=140.97 Aligned_cols=162 Identities=19% Similarity=0.284 Sum_probs=120.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
....++++|+|| ||+|+.+.|...+|..+|.+++. ++ + +..+.|+
T Consensus 142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~-~r-----------------~-----i~~~~fi--------- 186 (308)
T 3kfv_A 142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV-SR-----------------T-----DSPSKII--------- 186 (308)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC-------------------------------CC---------
T ss_pred cCCCCeEEEeCc---cHHHHHHHHHHhCcccccccccc-cc-----------------c-----ccCCCee---------
Confidence 346689999999 69999999999999888866541 11 0 1222333
Q ss_pred cCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Q 019061 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (346)
Q Consensus 210 yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~ 289 (346)
+.+.+++.++.|+.|+||++++|+++++.....+++||+.||++++|++|...+..++++.++++++.+. +++..
T Consensus 187 ---s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~-eiE~~- 261 (308)
T 3kfv_A 187 ---KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQ-KLRKH- 261 (308)
T ss_dssp ---CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHH-HHHHH-
T ss_pred ---cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHHHh-
Confidence 6788999999999999999999999999888889999999999999998744434455566666666543 33221
Q ss_pred CCCCceEEE-cCCCHHHHHHHHHHHHHHhhcccCceeeEeeccc
Q 019061 290 SSGIFDHIL-YNDKLEECYENLKVICYCLMQISDNLIIFLFVTY 332 (346)
Q Consensus 290 ~~~~~~~Vi-~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~ 332 (346)
..+.||++| .|++++.++.+|..+|..+.. +++|++..-+|+
T Consensus 262 ~~~~FD~vI~VNDdle~A~~~L~~iI~~~~~-epqWvp~~~~~~ 304 (308)
T 3kfv_A 262 SSHLFTATIPLNGTSDTWYQELKAIIREQQT-RPIWTAEDQLHH 304 (308)
T ss_dssp HGGGCSEEEEECSSSTHHHHHHHHHHHHHTT-SEEEEEC-----
T ss_pred hhccCcEEEEcCCCHHHHHHHHHHHHHHhcC-CCeEeehhhhhc
Confidence 135689999 899999999999999998865 578998665553
No 24
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.56 E-value=4.5e-15 Score=139.43 Aligned_cols=177 Identities=19% Similarity=0.271 Sum_probs=118.9
Q ss_pred CCCeEEEEcCCCCChHH---HHHhhccccCCCccceeeecCCcccccccCCeeEE--eeChhHHHHHHhccchhhhhhhh
Q 019061 132 VEKPVVITGPSGVGKGT---LISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYH--FTERSVMEKAIKDGKFLEFASVH 206 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsT---l~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~--f~s~~~~~~~~~~~~~~e~~~~~ 206 (346)
.-++++|+||+++|--+ +-++|...++..++..|.+| |..+.....+..+. +.....+......+.+.|.
T Consensus 141 ~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev---- 215 (337)
T 4dey_A 141 SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEV---- 215 (337)
T ss_dssp SSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------------CCCHHHH----
T ss_pred CCCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhhhcccccccchHHH----
Confidence 45889999999999875 34455555555566566544 65555555444331 3334444433333443332
Q ss_pred ccccCCcHHHHHHHHHhCCceEEEecHH-HHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 019061 207 GNLYGTSVEAVEAVADAGKRCILDIDVQ-GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEI 285 (346)
Q Consensus 207 ~~~yg~~~~~i~~~~~~~~~~iLD~~~~-~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i 285 (346)
....+.+.+..+.|+.|+||++++ |+++++...+.+++||+.+|++++|++||..|+.+..+.+.++++.+..++
T Consensus 216 ----~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~E~ 291 (337)
T 4dey_A 216 ----QSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLA 291 (337)
T ss_dssp ----HHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred ----HhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 223344555555789999999998 999999988999999999999999999999998755556666666555545
Q ss_pred HhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhc
Q 019061 286 KQGKSSGIFDHILYNDKLEECYENLKVICYCLMQ 319 (346)
Q Consensus 286 ~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~ 319 (346)
..+ .+.||++|.|++++.++++|..+|.....
T Consensus 292 ~~~--~~~FDyvIVNDdLe~A~~~L~~iI~~~~~ 323 (337)
T 4dey_A 292 QCP--PELFDVILDENQLEDACEHLADYLEAYWK 323 (337)
T ss_dssp HSC--GGGCSEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred hhC--cccCCEEEECCCHHHHHHHHHHHHHHHHh
Confidence 442 46799999999999999999999987654
No 25
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.41 E-value=1.1e-13 Score=133.30 Aligned_cols=98 Identities=24% Similarity=0.217 Sum_probs=70.0
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~ 191 (346)
.+.||...+..+.++...+|++++|+||||||||||+++|++..++..| .|....+.. ......+++|+||+..+|+
T Consensus 10 ~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p 88 (381)
T 3rlf_A 10 TKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG-DLFIGEKRMNDTPPAERGVGMVFQSYALYP 88 (381)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTCCGGGSCEEEECTTCCCCT
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCe-EEEECCEECCCCCHHHCCEEEEecCCcCCC
Confidence 3556766666777788889999999999999999999999999999888 554222111 1112256899999987777
Q ss_pred HHHhccchhhhhhhhccccCCcHHH
Q 019061 192 KAIKDGKFLEFASVHGNLYGTSVEA 216 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~~~yg~~~~~ 216 (346)
.+ ++.++..+....++.+.+.
T Consensus 89 ~l----tV~eni~~~~~~~~~~~~~ 109 (381)
T 3rlf_A 89 HL----SVAENMSFGLKLAGAKKEV 109 (381)
T ss_dssp TS----CHHHHHTHHHHHTTCCHHH
T ss_pred CC----CHHHHHHHHHHHcCCCHHH
Confidence 65 6677766654445555443
No 26
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.40 E-value=2.2e-13 Score=130.39 Aligned_cols=93 Identities=16% Similarity=0.087 Sum_probs=67.3
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc------ccccccCCeeEEeeCh
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA------PRAMEKDGVHYHFTER 187 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~------~~~~~~~g~~y~f~s~ 187 (346)
.+.||...+..+.++...+|++++|+||||||||||+++|++..++..| .|....+. .......+++|+||+.
T Consensus 11 s~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~ 89 (359)
T 3fvq_A 11 SKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG-EISLSGKTIFSKNTNLPVRERRLGYLVQEG 89 (359)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEESSSCBCCGGGSCCEEECTTC
T ss_pred EEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCc-EEEECCEECcccccccchhhCCEEEEeCCC
Confidence 3566766677677788889999999999999999999999999999888 44321111 1112235689999998
Q ss_pred hHHHHHHhccchhhhhhhhccccC
Q 019061 188 SVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
.+|+.+ ++.++..+....++
T Consensus 90 ~l~p~l----tV~eni~~~l~~~~ 109 (359)
T 3fvq_A 90 VLFPHL----TVYRNIAYGLGNGK 109 (359)
T ss_dssp CCCTTS----CHHHHHHTTSTTSS
T ss_pred cCCCCC----CHHHHHHHHHHHcC
Confidence 777765 66777666544333
No 27
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.38 E-value=1.5e-12 Score=116.30 Aligned_cols=164 Identities=20% Similarity=0.219 Sum_probs=102.4
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchh-----hhhh
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL-----EFAS 204 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~-----e~~~ 204 (346)
..+.++++|+||+||||+|+++.|+..+.. .|. +..+++...+..++-+ ++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~------~hI----------------stGdllR~~i~~~t~lg~~~~~~~- 82 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHF------NHL----------------SSGDLLRAEVQSGSPKGKELKAMM- 82 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCC------EEE----------------CHHHHHHHHHTTCCHHHHHHHHHH-
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCC------ceE----------------cHHHHHHHHHHcCCchHHHHHHHH-
Confidence 457789999999999999999999987531 111 1122222222111110 000
Q ss_pred hhccccCC------cHHHHHHHHHhCCceEEEecHHHHHHH---HcCCCC-eEEEEEcCCCHHHHHHHHHcCC------C
Q 019061 205 VHGNLYGT------SVEAVEAVADAGKRCILDIDVQGARSV---RASPLD-AIFIFICPPSMEELEERLRARG------T 268 (346)
Q Consensus 205 ~~~~~yg~------~~~~i~~~~~~~~~~iLD~~~~~~~~l---~~~~~~-~~~ill~~p~~~~l~eRL~~R~------~ 268 (346)
-.+.+.+. ..+.+.........++||++|....+. ...... ..++++.. +.+++.+|+..|. +
T Consensus 83 ~~G~lVpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v-~~e~~~~Rl~~R~~~~~R~D 161 (217)
T 3umf_A 83 ERGELVPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDV-SEEVMRKRLLKRAETSNRVD 161 (217)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEEC-CHHHHHHHHSCC------CH
T ss_pred hcCCCCCHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccC-CHHHHHHHHhcccccCCCCC
Confidence 01111110 011122222245679999988766654 332222 33444444 4789999987764 5
Q ss_pred CCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 269 ETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 269 ~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
++++.+++|++.|.++ +++|...+.+..|.++.+++++++++.++++++
T Consensus 162 D~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 162 DNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQKF 214 (217)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 6788999999999876 667766677788899999999999999988765
No 28
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.37 E-value=5.6e-12 Score=111.76 Aligned_cols=158 Identities=25% Similarity=0.297 Sum_probs=100.0
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhh----hhhhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE----FASVHGNLY 210 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e----~~~~~~~~y 210 (346)
+++|+||+||||+|+++.|+..+.. .| .++.+++...+..++-+- ...-.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~------~~----------------istGdllR~~i~~~t~lg~~~~~~~~~G~lv 59 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF------VH----------------ISTGDILREAVQKGTPLGKKAKEYMERGELV 59 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC------EE----------------EEHHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC------eE----------------EcHHHHHHHHHHhcChhhhhHHHHHhcCCcC
Confidence 6889999999999999999987531 11 122333333222221110 000111111
Q ss_pred CC--cHHHHHHHHHhCCceEEEecHHHHHHHH-------cCCCCe-EEEEEcCCCHHHHHHHHHcC--------------
Q 019061 211 GT--SVEAVEAVADAGKRCILDIDVQGARSVR-------ASPLDA-IFIFICPPSMEELEERLRAR-------------- 266 (346)
Q Consensus 211 g~--~~~~i~~~~~~~~~~iLD~~~~~~~~l~-------~~~~~~-~~ill~~p~~~~l~eRL~~R-------------- 266 (346)
+. ....+...+.....++||++|....+.. .....+ .++++.. +.+++.+|+.+|
T Consensus 60 pd~iv~~lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v-~~e~l~~Rl~~R~~~~~~g~~y~~~~ 138 (206)
T 3sr0_A 60 PDDLIIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEV-PDEVVIERLSGRRINPETGEVYHVKY 138 (206)
T ss_dssp CHHHHHHHHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHTEEECTTTCCEEETTT
T ss_pred CHHHHHHHHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCC-CHHHHHHHHhCCccccCCCceeeeec
Confidence 11 0122333334556799999887665542 223333 3444444 478888898765
Q ss_pred ------------CCCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHH
Q 019061 267 ------------GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 267 ------------~~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
.+++++.+++|++.|.++ +++|...+.+..|.++.+++++++++.++|.
T Consensus 139 ~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 139 NPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp BCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred cCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 367899999999999977 6677667778888999999999999888774
No 29
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.35 E-value=2.3e-14 Score=137.51 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=100.1
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~~ 192 (346)
+.||...+..+.+++..+|++++|+||||||||||+++|++..++..| .|....+.. .......++|+||+..+|+.
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (362)
T 2it1_A 11 KKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG-KIYFDEKDVTELPPKDRNVGLVFQNWALYPH 89 (362)
T ss_dssp EESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGTTEEEECTTCCCCTT
T ss_pred EEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCce-EEEECCEECCcCCHhHCcEEEEecCcccCCC
Confidence 445555556666777889999999999999999999999999999888 443211111 01122568999998877765
Q ss_pred HHhccchhhhhhhhccccCCcHHH----HHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 193 AIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 193 ~~~~~~~~e~~~~~~~~yg~~~~~----i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
+ ++.++..+....++...+. ++++++. +..-+++-.+..+..-++++....+.++..|++..|||++.+.|
T Consensus 90 l----tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 165 (362)
T 2it1_A 90 M----TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165 (362)
T ss_dssp S----CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSC
T ss_pred C----CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 5 5666665543333333322 2233221 11111111222222222222223334445555556666677776
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHH
Q 019061 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEEC 306 (346)
Q Consensus 268 ~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~ 306 (346)
..+...+++.+..+..+.. ...++++|+++++
T Consensus 166 ~~~r~~l~~~l~~l~~~~g-------~tvi~vTHd~~~a 197 (362)
T 2it1_A 166 ALLRLEVRAELKRLQKELG-------ITTVYVTHDQAEA 197 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------CEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-------CEEEEECCCHHHH
Confidence 5555555555544432211 2455566666554
No 30
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.35 E-value=5.6e-13 Score=127.67 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=106.2
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc-----ccc--cccCCeeEEeeChhHHHHH
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRA--MEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~-----~~~--~~~~g~~y~f~s~~~~~~~ 193 (346)
.+..+.++.+.+|++++|+||||||||||+++|.+..++..| .|....+. ... ....+++|+||...+++.+
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G-~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~ 120 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG-SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC
Confidence 345556677889999999999999999999999999999888 54322111 111 1135789999988766554
Q ss_pred HhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHH
Q 019061 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (346)
Q Consensus 194 ~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~ 273 (346)
++.++..+....++.+.+...+.... .+.. ..+.+....+....+.+
T Consensus 121 ----TV~env~~~~~~~~~~~~~~~~~v~~-----------lL~~------------------vgL~~~~~~~~~~LSGG 167 (366)
T 3tui_C 121 ----TVFGNVALPLELDNTPKDEVKRRVTE-----------LLSL------------------VGLGDKHDSYPSNLSGG 167 (366)
T ss_dssp ----CHHHHHHHHHHHSCCCHHHHHHHHHH-----------HHHH------------------HTCGGGTTCCTTTSCHH
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHH-----------HHHH------------------cCCchHhcCChhhCCHH
Confidence 66666655544455444332222111 0000 01112222333455789
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 274 ILKRLRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 274 i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
.+||+..+++.+.. ...++.++ |+.. ...+.+++..+.... +..++++.|+.+.+..+|
T Consensus 168 qkQRVaIArAL~~~------P~lLLlDEPTs~LD~~~-~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 168 QKQRVAIARALASN------PKVLLCDQATSALDPAT-TRSILELLKDINRRL-GLTILLITHEMDVVKRIC 231 (366)
T ss_dssp HHHHHHHHHHTTTC------CSEEEEESTTTTSCHHH-HHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHHhcC------CCEEEEECCCccCCHHH-HHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhC
Confidence 99999998876543 23444333 4433 345666777665332 344447777776665554
No 31
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.34 E-value=8.2e-13 Score=127.22 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=65.5
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--------cccccCCeeEEeeC
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTE 186 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~g~~y~f~s 186 (346)
+.|+...+..+.++...+|++++|+||||||||||+++|++..++..| .|....+.. .......++|+||+
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~ 89 (372)
T 1g29_1 11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG-QIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89 (372)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEEEGGGTEECCGGGSSEEEECSC
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCcc-EEEECCEECccccccccCCHhHCCEEEEeCC
Confidence 455655566666777889999999999999999999999999998888 443211111 11123568999999
Q ss_pred hhHHHHHHhccchhhhhhhhccccCCcH
Q 019061 187 RSVMEKAIKDGKFLEFASVHGNLYGTSV 214 (346)
Q Consensus 187 ~~~~~~~~~~~~~~e~~~~~~~~yg~~~ 214 (346)
..+|+.+ ++.++..+....++...
T Consensus 90 ~~l~~~l----tv~eni~~~~~~~~~~~ 113 (372)
T 1g29_1 90 YALYPHM----TVYDNIAFPLKLRKVPR 113 (372)
T ss_dssp CCCCTTS----CHHHHHHHHHHHTTCCH
T ss_pred CccCCCC----CHHHHHHHHHHHcCCCH
Confidence 8777655 66666665433344333
No 32
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.34 E-value=1.4e-14 Score=138.61 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=99.6
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-------cccccCCeeEEeeChhHHHHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-------RAMEKDGVHYHFTERSVMEKAI 194 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-------~~~~~~g~~y~f~s~~~~~~~~ 194 (346)
+..+.++...+|++++|+||||||||||+++|++..++..| .|....+.. .......++|+||+..+|+.+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l- 97 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG-ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL- 97 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE-EEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS-
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECcccccccCChhhCCEEEEeCCCccCCCC-
Confidence 45556677889999999999999999999999999998888 443211111 111235689999988777665
Q ss_pred hccchhhhhhhhccccCCcHHH----HHHHHHh-CCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCC
Q 019061 195 KDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (346)
Q Consensus 195 ~~~~~~e~~~~~~~~yg~~~~~----i~~~~~~-~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~ 269 (346)
++.++..+....++...+. +.++++. +..-+++-.+..+..-++++....+.++..|++..|||++.+.|..
T Consensus 98 ---tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~ 174 (353)
T 1oxx_K 98 ---TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174 (353)
T ss_dssp ---CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 6677766654444444322 2333322 1111111112222222222223334445555555666677777766
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHH
Q 019061 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEEC 306 (346)
Q Consensus 270 ~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~ 306 (346)
+...+++.+..+..+.. ...++++|+++++
T Consensus 175 ~r~~l~~~l~~l~~~~g-------~tvi~vTHd~~~~ 204 (353)
T 1oxx_K 175 MRDSARALVKEVQSRLG-------VTLLVVSHDPADI 204 (353)
T ss_dssp GHHHHHHHHHHHHHHHC-------CEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHhcC-------CEEEEEeCCHHHH
Confidence 66666666655433211 2456666666554
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.33 E-value=6.4e-13 Score=127.30 Aligned_cols=94 Identities=18% Similarity=0.113 Sum_probs=66.2
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~~ 192 (346)
+.||...+..+.+++..+|++++|+||||||||||+++|++..++..| .|....+.. .......++|+||+..+|+.
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (359)
T 2yyz_A 11 KYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG-EIYFDDVLVNDIPPKYREVGMVFQNYALYPH 89 (359)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGTTEEEECSSCCCCTT
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCcc-EEEECCEECCCCChhhCcEEEEecCcccCCC
Confidence 456655566666777889999999999999999999999999999888 443221111 01123568999999877766
Q ss_pred HHhccchhhhhhhhccccCCc
Q 019061 193 AIKDGKFLEFASVHGNLYGTS 213 (346)
Q Consensus 193 ~~~~~~~~e~~~~~~~~yg~~ 213 (346)
+ ++.++..+....++.+
T Consensus 90 l----tv~eni~~~~~~~~~~ 106 (359)
T 2yyz_A 90 M----TVFENIAFPLRARRIS 106 (359)
T ss_dssp S----CHHHHHHGGGSSSCSH
T ss_pred C----CHHHHHHHHHHhcCCC
Confidence 5 6677766654444433
No 34
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.33 E-value=8e-13 Score=127.22 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=62.2
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~ 191 (346)
.+.|+...+..+.++...+|++++|+||||||||||+++|++..++..| .|....+.. .......++|+||+..+|+
T Consensus 18 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 96 (372)
T 1v43_A 18 TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG-RIYFGDRDVTYLPPKDRNISMVFQSYAVWP 96 (372)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGGTEEEEEC------
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCce-EEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 3556666666667777889999999999999999999999999999888 443221111 0111246899999987777
Q ss_pred HHHhccchhhhhhhhccccCCcH
Q 019061 192 KAIKDGKFLEFASVHGNLYGTSV 214 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~~~yg~~~ 214 (346)
.+ ++.++..+....++...
T Consensus 97 ~l----tv~eni~~~~~~~~~~~ 115 (372)
T 1v43_A 97 HM----TVYENIAFPLKIKKFPK 115 (372)
T ss_dssp CC----CHHHHHHTTCC--CCCH
T ss_pred CC----CHHHHHHHHHHhcCCCH
Confidence 65 67777766544444443
No 35
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.30 E-value=6e-13 Score=127.27 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=62.8
Q ss_pred HHc-CCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHH
Q 019061 115 KVV-GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVME 191 (346)
Q Consensus 115 ~~~-g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~ 191 (346)
+.| |...+..+.++.+.+|++++|+||||||||||+++|++..++..| .|....+.. .......++|+||+..+|+
T Consensus 22 ~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 100 (355)
T 1z47_A 22 KIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG-DVWIGGKRVTDLPPQKRNVGLVFQNYALFQ 100 (355)
T ss_dssp ECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTCCGGGSSEEEECGGGCCCT
T ss_pred EEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCEECCcCChhhCcEEEEecCcccCC
Confidence 344 433344455566779999999999999999999999999999888 443221111 1112356899999877776
Q ss_pred HHHhccchhhhhhhhccccCCc
Q 019061 192 KAIKDGKFLEFASVHGNLYGTS 213 (346)
Q Consensus 192 ~~~~~~~~~e~~~~~~~~yg~~ 213 (346)
.+ ++.++..+....++.+
T Consensus 101 ~l----tv~eni~~~l~~~~~~ 118 (355)
T 1z47_A 101 HM----TVYDNVSFGLREKRVP 118 (355)
T ss_dssp TS----CHHHHHHHHHHHTTCC
T ss_pred CC----CHHHHHHHHHHHcCCC
Confidence 55 6666665543333433
No 36
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.30 E-value=2.6e-12 Score=117.71 Aligned_cols=180 Identities=16% Similarity=0.190 Sum_probs=102.8
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc---cccccCCeeEEeeChhHH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~g~~y~f~s~~~~ 190 (346)
.+.|+...+..+.++...+|++++|+||||||||||+++|++..++..| .+....... .......++|+|+....+
T Consensus 22 ~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~ 100 (256)
T 1vpl_A 22 RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG-IVTVFGKNVVEEPHEVRKLISYLPEEAGAY 100 (256)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTCHHHHHTTEEEECTTCCCC
T ss_pred EEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCccHHHHhhcEEEEcCCCCCC
Confidence 3456656666667778889999999999999999999999999998888 543221111 111234688999876655
Q ss_pred HHHHhccchhhhhhhhccccCCcHHH----HHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 191 EKAIKDGKFLEFASVHGNLYGTSVEA----VEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 191 ~~~~~~~~~~e~~~~~~~~yg~~~~~----i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
..+ ++.++..+....++...+. +.++++. + .+.+.+..+
T Consensus 101 ~~l----tv~enl~~~~~~~~~~~~~~~~~~~~~l~~---------------~------------------gL~~~~~~~ 143 (256)
T 1vpl_A 101 RNM----QGIEYLRFVAGFYASSSSEIEEMVERATEI---------------A------------------GLGEKIKDR 143 (256)
T ss_dssp TTS----BHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------H------------------CCGGGGGSB
T ss_pred CCC----cHHHHHHHHHHHcCCChHHHHHHHHHHHHH---------------C------------------CCchHhcCC
Confidence 433 5555555433333333221 1111111 0 001111122
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcC-----CCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYN-----DKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n-----~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
....+.+.+||+..+++.+.. ++.++-+ -|+.. ...+.+++..+.. . +.+++.+.|+.+.+..+|
T Consensus 144 ~~~LSgGq~qRv~lAraL~~~------p~lllLDEPts~LD~~~-~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~~~ 213 (256)
T 1vpl_A 144 VSTYSKGMVRKLLIARALMVN------PRLAILDEPTSGLDVLN-AREVRKILKQASQ-E-GLTILVSSHNMLEVEFLC 213 (256)
T ss_dssp GGGCCHHHHHHHHHHHHHTTC------CSEEEEESTTTTCCHHH-HHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTC
T ss_pred hhhCCHHHHHHHHHHHHHHcC------CCEEEEeCCccccCHHH-HHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHHC
Confidence 233467888999888866543 2333333 25433 3456666666642 2 344446677666555444
No 37
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.29 E-value=1.4e-14 Score=138.39 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=60.8
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEK 192 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~~ 192 (346)
+.|+.. +..+.++...+|++++|+||||||||||+++|++..++..| .|....+.. .......++|+||+..+|+.
T Consensus 9 ~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 86 (348)
T 3d31_A 9 RKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG-RILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86 (348)
T ss_dssp EECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE-EEEETTEECTTSCHHHHTCEEECTTCCCCTT
T ss_pred EEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCc-EEEECCEECCCCchhhCcEEEEecCcccCCC
Confidence 445555 55666677889999999999999999999999999999888 544322111 01112468899998777765
Q ss_pred HHhccchhhhhhhh
Q 019061 193 AIKDGKFLEFASVH 206 (346)
Q Consensus 193 ~~~~~~~~e~~~~~ 206 (346)
+ ++.++..+.
T Consensus 87 l----tv~enl~~~ 96 (348)
T 3d31_A 87 M----NVKKNLEFG 96 (348)
T ss_dssp S----CHHHHHHHH
T ss_pred C----CHHHHHHHH
Confidence 5 556665553
No 38
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.29 E-value=1.1e-11 Score=113.56 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=105.2
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeChhH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~~ 189 (346)
+.|+...+..+.+++..+|++++|+||||||||||+++|.+..++..| .+....... ......+++|+|+....
T Consensus 15 ~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 93 (257)
T 1g6h_A 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG-RVYFENKDITNKEPAELYHYGIVRTFQTPQP 93 (257)
T ss_dssp EEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHHTEEECCCCCGG
T ss_pred EEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhCCEEEEccCCcc
Confidence 456656666667788889999999999999999999999999998888 443222111 11112458899998766
Q ss_pred HHHHHhccchhhhhhhhccc--cC-----------Cc-HH---HHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEc
Q 019061 190 MEKAIKDGKFLEFASVHGNL--YG-----------TS-VE---AVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFIC 252 (346)
Q Consensus 190 ~~~~~~~~~~~e~~~~~~~~--yg-----------~~-~~---~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~ 252 (346)
+..+ ++.++..+.... ++ .. .+ .+.+.++. +
T Consensus 94 ~~~~----tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------~------------- 141 (257)
T 1g6h_A 94 LKEM----TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF---------------L------------- 141 (257)
T ss_dssp GGGS----BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHH---------------T-------------
T ss_pred CCCC----cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHH---------------c-------------
Confidence 5543 555655443221 12 11 11 11111111 0
Q ss_pred CCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccc
Q 019061 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTY 332 (346)
Q Consensus 253 ~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~ 332 (346)
.+.+....+....+.+.+||+..+++.+... ..-++|+....-|+.. ...+.+++..+.. + +..++.+.|+
T Consensus 142 -----~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p-~lllLDEPts~LD~~~-~~~l~~~l~~l~~-~-g~tvi~vtHd 212 (257)
T 1g6h_A 142 -----KLSHLYDRKAGELSGGQMKLVEIGRALMTNP-KMIVMDEPIAGVAPGL-AHDIFNHVLELKA-K-GITFLIIEHR 212 (257)
T ss_dssp -----TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC-SEEEEESTTTTCCHHH-HHHHHHHHHHHHH-T-TCEEEEECSC
T ss_pred -----CCchhhCCCchhCCHHHHHHHHHHHHHHcCC-CEEEEeCCccCCCHHH-HHHHHHHHHHHHH-C-CCEEEEEecC
Confidence 0111112222345789999999998776541 1111222222235533 4566677777643 2 4445577887
Q ss_pred ccchhhhh
Q 019061 333 PDLTSLLC 340 (346)
Q Consensus 333 ~~~~~~~~ 340 (346)
.+.+..+|
T Consensus 213 ~~~~~~~~ 220 (257)
T 1g6h_A 213 LDIVLNYI 220 (257)
T ss_dssp CSTTGGGC
T ss_pred HHHHHHhC
Confidence 77666554
No 39
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.29 E-value=2.1e-12 Score=118.69 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=59.2
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-----------------cccc
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----------------AMEK 177 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-----------------~~~~ 177 (346)
+.||...+..+.++...+|++++|+||||||||||+++|++..++..| .|........ ....
T Consensus 14 ~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1b0u_A 14 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-AIIVNGQNINLVRDKDGQLKVADKNQLRLLR 92 (262)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCEEECTTSSEEESCHHHHHHHH
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEccccccccccccccChhhHHHHh
Confidence 445655666667778889999999999999999999999999998888 4432211110 0112
Q ss_pred CCeeEEeeChhHHHHHHhccchhhhhhh
Q 019061 178 DGVHYHFTERSVMEKAIKDGKFLEFASV 205 (346)
Q Consensus 178 ~g~~y~f~s~~~~~~~~~~~~~~e~~~~ 205 (346)
..++|+|+....+..+ ++.++..+
T Consensus 93 ~~i~~v~Q~~~l~~~l----tv~e~l~~ 116 (262)
T 1b0u_A 93 TRLTMVFQHFNLWSHM----TVLENVME 116 (262)
T ss_dssp HHEEEECSSCCCCTTS----CHHHHHHH
T ss_pred cceEEEecCcccCCCC----cHHHHHHh
Confidence 3478999886555443 45555544
No 40
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.26 E-value=3.2e-12 Score=118.27 Aligned_cols=184 Identities=11% Similarity=0.049 Sum_probs=105.1
Q ss_pred HHcCC-eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc------cccccCCeeEEeeCh
Q 019061 115 KVVGA-EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTER 187 (346)
Q Consensus 115 ~~~g~-~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~g~~y~f~s~ 187 (346)
+.|+. ..+..+.++.+.+|++++|+||||||||||+++|.+..++..| .|....... .......++|+||..
T Consensus 15 ~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~ 93 (275)
T 3gfo_A 15 YNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG-RILFDNKPIDYSRKGIMKLRESIGIVFQDP 93 (275)
T ss_dssp EECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCCSHHHHHHHHHSEEEECSSG
T ss_pred EEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe-EEEECCEECCcccccHHHHhCcEEEEEcCc
Confidence 34432 3355566677889999999999999999999999999999888 554322111 111234689999976
Q ss_pred h-HHHHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 188 S-VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 188 ~-~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
. .+.. .++.++..+....++.+.+...+.... .+..+ .+.+....+
T Consensus 94 ~~~~~~----~tv~e~l~~~~~~~~~~~~~~~~~~~~-----------~l~~~------------------~L~~~~~~~ 140 (275)
T 3gfo_A 94 DNQLFS----ASVYQDVSFGAVNMKLPEDEIRKRVDN-----------ALKRT------------------GIEHLKDKP 140 (275)
T ss_dssp GGTCCS----SBHHHHHHHHHHTSCCCHHHHHHHHHH-----------HHHHT------------------TCGGGTTSB
T ss_pred cccccc----CcHHHHHHHHHHHcCCCHHHHHHHHHH-----------HHHHc------------------CCchhhcCC
Confidence 3 1112 255555555443444444332221111 00000 011111122
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcC-----CCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYN-----DKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n-----~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
....+.+.+||+..+++.+.. .+.++.+ -|+.. ...+.+++..+.... +.+++++.|+.+.+..+|
T Consensus 141 ~~~LSgGqkQRv~iAraL~~~------P~lLlLDEPts~LD~~~-~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~ 211 (275)
T 3gfo_A 141 THCLSFGQKKRVAIAGVLVME------PKVLILDEPTAGLDPMG-VSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYC 211 (275)
T ss_dssp GGGSCHHHHHHHHHHHHHTTC------CSEEEEECTTTTCCHHH-HHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGC
T ss_pred cccCCHHHHHHHHHHHHHHcC------CCEEEEECccccCCHHH-HHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhC
Confidence 233578999999999877654 2344433 35543 345667777765222 444557788777766555
No 41
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.26 E-value=1.6e-11 Score=111.22 Aligned_cols=188 Identities=13% Similarity=0.041 Sum_probs=102.4
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cccccCCeeEEeeChhH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~~~ 189 (346)
+.|+...+..+.++...+|++++|+||||||||||++.|++.+++..| .+....... ......+++|+|+...+
T Consensus 14 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 92 (240)
T 1ji0_A 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG-KIIFNGQDITNKPAHVINRMGIALVPEGRRI 92 (240)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHTTEEEECSSCCC
T ss_pred EEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCCHHHHHhCCEEEEecCCcc
Confidence 445555566666777889999999999999999999999999998888 543322111 11112458899988765
Q ss_pred HHHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCC
Q 019061 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (346)
Q Consensus 190 ~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~ 269 (346)
+..+ ++.++..+..... ...+...+.... .+.. +..+.+.+..+...
T Consensus 93 ~~~l----tv~enl~~~~~~~-~~~~~~~~~~~~-----------~l~~-----------------~~~l~~~~~~~~~~ 139 (240)
T 1ji0_A 93 FPEL----TVYENLMMGAYNR-KDKEGIKRDLEW-----------IFSL-----------------FPRLKERLKQLGGT 139 (240)
T ss_dssp CTTS----BHHHHHHGGGTTC-CCSSHHHHHHHH-----------HHHH-----------------CHHHHTTTTSBSSS
T ss_pred CCCC----cHHHHHHHhhhcC-CCHHHHHHHHHH-----------HHHH-----------------cccHhhHhcCChhh
Confidence 5443 5555554432111 111111111110 0000 00122222333345
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 270 ~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
.+.+.+||+..+++.+... ..-++|+....-|+.. ...+.+++..+.. . +.+++.+.|+.+.+..+|
T Consensus 140 LSgGq~qrv~lAraL~~~p-~lllLDEPts~LD~~~-~~~l~~~l~~~~~-~-g~tvi~vtHd~~~~~~~~ 206 (240)
T 1ji0_A 140 LSGGEQQMLAIGRALMSRP-KLLMMDEPSLGLAPIL-VSEVFEVIQKINQ-E-GTTILLVEQNALGALKVA 206 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCC-SEEEEECTTTTCCHHH-HHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCC-CEEEEcCCcccCCHHH-HHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhC
Confidence 5788889998888665431 1111222222335533 3456666666643 2 344446677665554444
No 42
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.25 E-value=3e-12 Score=117.68 Aligned_cols=86 Identities=21% Similarity=0.157 Sum_probs=58.9
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----c-ccccCCeeEEeeChh
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----R-AMEKDGVHYHFTERS 188 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~-~~~~~g~~y~f~s~~ 188 (346)
+.|+...+..+.++...+|++++|+||||||||||+++|.+..++..| .|....... . ......++|+|+...
T Consensus 32 ~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~ 110 (263)
T 2olj_A 32 KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG-EIIIDGINLKAKDTNLNKVREEVGMVFQRFN 110 (263)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEESSSTTCCHHHHHHHEEEECSSCC
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEEECCEECCCccccHHHHhCcEEEEeCCCc
Confidence 455555566667777889999999999999999999999999998888 443221111 0 011234789998865
Q ss_pred HHHHHHhccchhhhhhh
Q 019061 189 VMEKAIKDGKFLEFASV 205 (346)
Q Consensus 189 ~~~~~~~~~~~~e~~~~ 205 (346)
.+..+ ++.++..+
T Consensus 111 l~~~~----tv~e~l~~ 123 (263)
T 2olj_A 111 LFPHM----TVLNNITL 123 (263)
T ss_dssp CCTTS----CHHHHHHH
T ss_pred CCCCC----CHHHHHHH
Confidence 55443 45555544
No 43
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.25 E-value=1.5e-13 Score=122.64 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=99.4
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHH
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~ 194 (346)
+.|+. .+..+.++...+|++++|+||||||||||+++|++..++..| .+........ .....++|+|+....+..+
T Consensus 18 ~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~- 93 (214)
T 1sgw_A 18 VGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG-EIIYNGVPIT-KVKGKIFFLPEEIIVPRKI- 93 (214)
T ss_dssp EESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGG-GGGGGEEEECSSCCCCTTS-
T ss_pred EEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEhh-hhcCcEEEEeCCCcCCCCC-
Confidence 34554 555666677889999999999999999999999999998888 5543222111 1234578998876554433
Q ss_pred hccchhhhhhhhccccC--CcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHH
Q 019061 195 KDGKFLEFASVHGNLYG--TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (346)
Q Consensus 195 ~~~~~~e~~~~~~~~yg--~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e 272 (346)
++.++..+....++ ...+.+.+.++.- . +.+. ..+....+.
T Consensus 94 ---tv~enl~~~~~~~~~~~~~~~~~~~l~~~------------------g---------------l~~~-~~~~~~LSg 136 (214)
T 1sgw_A 94 ---SVEDYLKAVASLYGVKVNKNEIMDALESV------------------E---------------VLDL-KKKLGELSQ 136 (214)
T ss_dssp ---BHHHHHHHHHHHTTCCCCHHHHHHHHHHT------------------T---------------CCCT-TSBGGGSCH
T ss_pred ---CHHHHHHHHHHhcCCchHHHHHHHHHHHc------------------C---------------CCcC-CCChhhCCH
Confidence 44555444322222 1122222222210 0 0001 112223468
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 273 QILKRLRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 273 ~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
+.+||+..+++.+.. ...++-++ |+.. ...+.+++..+.. . +.+++++.|+.+.+..+|
T Consensus 137 Gqkqrv~laraL~~~------p~lllLDEPts~LD~~~-~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~ 200 (214)
T 1sgw_A 137 GTIRRVQLASTLLVN------AEIYVLDDPVVAIDEDS-KHKVLKSILEILK-E-KGIVIISSREELSYCDVN 200 (214)
T ss_dssp HHHHHHHHHHHTTSC------CSEEEEESTTTTSCTTT-HHHHHHHHHHHHH-H-HSEEEEEESSCCTTSSEE
T ss_pred HHHHHHHHHHHHHhC------CCEEEEECCCcCCCHHH-HHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhC
Confidence 999999998866543 23333332 4432 3456666666642 2 344446777777655444
No 44
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.24 E-value=8e-12 Score=115.06 Aligned_cols=187 Identities=13% Similarity=0.071 Sum_probs=105.0
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhH
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSV 189 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~ 189 (346)
.+.|+...+..+.++...+|++++|+||||||||||+++|.+..++..| .|....... ........+|+|+....
T Consensus 18 ~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 96 (266)
T 4g1u_C 18 HYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG-ECHLLGQNLNSWQPKALARTRAVMRQYSEL 96 (266)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC-EEEETTEETTTSCHHHHHHHEEEECSCCCC
T ss_pred EEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECCcCCHHHHhheEEEEecCCcc
Confidence 3456666677777778889999999999999999999999999999888 554222111 11111236788886554
Q ss_pred HHHHHhccchhhhhhhhccccCCc--HHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 190 MEKAIKDGKFLEFASVHGNLYGTS--VEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 190 ~~~~~~~~~~~e~~~~~~~~yg~~--~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
+..+ ++.++..+....+... .+.+.+.++.-. +.+....+.
T Consensus 97 ~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~---------------------------------l~~~~~~~~ 139 (266)
T 4g1u_C 97 AFPF----SVSEVIQMGRAPYGGSQDRQALQQVMAQTD---------------------------------CLALAQRDY 139 (266)
T ss_dssp CSCC----BHHHHHHGGGTTSCSTTHHHHHHHHHHHTT---------------------------------CSTTTTSBG
T ss_pred CCCC----CHHHHHHhhhhhcCcHHHHHHHHHHHHHcC---------------------------------ChhHhcCCc
Confidence 3222 4555554433222211 122222221100 000011112
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 268 ~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
...+.+.+||+..+++.+..+....-...++.++ |+.. ...+.+++..+... .+..++.+.|+.+.+..+|
T Consensus 140 ~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~-~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~ 215 (266)
T 4g1u_C 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYH-QQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYA 215 (266)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHH-HHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHH-HHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhC
Confidence 2347899999999998876211001134444443 5433 34566777766532 2344547778777665554
No 45
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.24 E-value=2.6e-12 Score=115.29 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=99.0
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cc--c-ccCCeeEEeeC
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RA--M-EKDGVHYHFTE 186 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~--~-~~~g~~y~f~s 186 (346)
+.|+...+..+.++...+|++++|+||||||||||+++|.+..++..| .+....... .. . .....+|+|+.
T Consensus 12 ~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 90 (224)
T 2pcj_A 12 KVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEG-KVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90 (224)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEE-EEEETTEECCSSCHHHHHHHHHHHEEEECSS
T ss_pred EEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCCCCHHHHHHHHhCcEEEEecC
Confidence 445555566666777889999999999999999999999999998888 443221111 00 0 11357899887
Q ss_pred hhHHHHHHhccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcC
Q 019061 187 RSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 187 ~~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R 266 (346)
...++.+ ++.++..+....++.......+.... .+..+ . +.+.+..+
T Consensus 91 ~~l~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~-----------~l~~~---~---------------l~~~~~~~ 137 (224)
T 2pcj_A 91 HYLIPEL----TALENVIVPMLKMGKPKKEAKERGEY-----------LLSEL---G---------------LGDKLSRK 137 (224)
T ss_dssp CCCCTTS----CHHHHHHHHHHHTTCCHHHHHHHHHH-----------HHHHT---T---------------CTTCTTCC
T ss_pred cccCCCC----CHHHHHHhHHHHcCCCHHHHHHHHHH-----------HHHHc---C---------------CchhhhCC
Confidence 6555433 45555444322233222211111100 00000 0 00011112
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcC-----CCHHHHHHHHHHHHHHhhcccCceeeEeecccccch
Q 019061 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYN-----DKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLT 336 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n-----~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~ 336 (346)
....+.+.+||+..+++.+.. .+.++.+ -|... ...+.+++..+... +..++.+.|+.+..
T Consensus 138 ~~~LSgGq~qrv~laral~~~------p~lllLDEPt~~LD~~~-~~~~~~~l~~l~~~--g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 138 PYELSGGEQQRVAIARALANE------PILLFADEPTGNLDSAN-TKRVMDIFLKINEG--GTSIVMVTHERELA 203 (224)
T ss_dssp GGGSCHHHHHHHHHHHHTTTC------CSEEEEESTTTTCCHHH-HHHHHHHHHHHHHT--TCEEEEECSCHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHcC------CCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC--CCEEEEEcCCHHHH
Confidence 233478999999998866543 2334433 25533 45566777766432 34444677766543
No 46
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.22 E-value=5.4e-12 Score=114.09 Aligned_cols=171 Identities=17% Similarity=0.132 Sum_probs=95.8
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc-----cc---cccCCeeEEeeChhHHHHH
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RA---MEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~-----~~---~~~~g~~y~f~s~~~~~~~ 193 (346)
+..+.++...+|++++|+||||||||||+++|.+..++..| .|....... .. .....++|+||...+++.+
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG-EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce-EEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 45556677889999999999999999999999999999888 554322111 00 0123588999987665543
Q ss_pred Hhccchhhhhhhhcccc---CCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHH-HcCCCC
Q 019061 194 IKDGKFLEFASVHGNLY---GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL-RARGTE 269 (346)
Q Consensus 194 ~~~~~~~e~~~~~~~~y---g~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL-~~R~~~ 269 (346)
++.++..+..... +...+...+.... .+... .+.+.+ ..+...
T Consensus 99 ----tv~enl~~~~~~~~~~~~~~~~~~~~~~~--------------~l~~~---------------~l~~~~~~~~~~~ 145 (235)
T 3tif_A 99 ----TALENVELPLIFKYRGAMSGEERRKRALE--------------CLKMA---------------ELEERFANHKPNQ 145 (235)
T ss_dssp ----CHHHHHHHHHHTCSSSCCCHHHHHHHHHH--------------HHHHT---------------TCCGGGTTCCGGG
T ss_pred ----cHHHHHHHHHHhhhccCCCHHHHHHHHHH--------------HHHHC---------------CCChhhhhCChhh
Confidence 4555544422111 2222221111100 00000 000111 122234
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 270 ~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
.+.+.+||+..+++.+.. ...++.++ |+.. ...+.+++..+.... +..++++.|+.+
T Consensus 146 LSgGq~QRv~iAral~~~------p~llllDEPts~LD~~~-~~~i~~~l~~l~~~~-g~tvi~vtHd~~ 207 (235)
T 3tif_A 146 LSGGQQQRVAIARALANN------PPIILADQPTWALDSKT-GEKIMQLLKKLNEED-GKTVVVVTHDIN 207 (235)
T ss_dssp SCHHHHHHHHHHHHHTTC------CSEEEEESTTTTSCHHH-HHHHHHHHHHHHHHH-CCEEEEECSCHH
T ss_pred CCHHHHHHHHHHHHHHcC------CCEEEEeCCcccCCHHH-HHHHHHHHHHHHHHc-CCEEEEEcCCHH
Confidence 478999999999877654 23444333 5433 345666777664322 344547777766
No 47
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.21 E-value=1.8e-11 Score=111.89 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=55.3
Q ss_pred HcC-CeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHH
Q 019061 116 VVG-AEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194 (346)
Q Consensus 116 ~~g-~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~ 194 (346)
.|+ ...+..+.++...+|++++|+||||||||||+++|.+..++..| .+. ....++|+|+....+..+
T Consensus 13 ~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~---------~~~~i~~v~q~~~~~~~~- 81 (253)
T 2nq2_C 13 YYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG-KIE---------VYQSIGFVPQFFSSPFAY- 81 (253)
T ss_dssp EETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEE-EEE---------ECSCEEEECSCCCCSSCC-
T ss_pred EeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEE---------EeccEEEEcCCCccCCCC-
Confidence 344 44555666677889999999999999999999999999998888 444 123578998876554322
Q ss_pred hccchhhhhhh
Q 019061 195 KDGKFLEFASV 205 (346)
Q Consensus 195 ~~~~~~e~~~~ 205 (346)
++.++..+
T Consensus 82 ---tv~enl~~ 89 (253)
T 2nq2_C 82 ---SVLDIVLM 89 (253)
T ss_dssp ---BHHHHHHG
T ss_pred ---CHHHHHHH
Confidence 45555544
No 48
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.20 E-value=8.8e-11 Score=106.43 Aligned_cols=167 Identities=20% Similarity=0.195 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
++..++|+||+||||||+++.|...+.. .......+.|.... .+. .....+...+..+.+.+.....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~-~~is~~~~~r~~~~---~~~----~~g~~i~~~~~~g~~~~~~~~~----- 94 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY-CHLSTGDLLREAAE---KKT----ELGLKIKNIINEGKLVDDQMVL----- 94 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC-EEEEHHHHHHHHTT---SSS----HHHHHHHHHHHTTCCCCHHHHH-----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC-eEEecHHHHHHHHh---ccc----hHHHHHHHHHhcCCCCcHHHHH-----
Confidence 5678999999999999999999876531 11111122221100 110 0011222222333333221111
Q ss_pred CcHHHHHHHH---HhCCceEEEecHHHHHHHHc-------CCCC-eEEEEEcCCCHHHHHHHHHcCC-------------
Q 019061 212 TSVEAVEAVA---DAGKRCILDIDVQGARSVRA-------SPLD-AIFIFICPPSMEELEERLRARG------------- 267 (346)
Q Consensus 212 ~~~~~i~~~~---~~~~~~iLD~~~~~~~~l~~-------~~~~-~~~ill~~p~~~~l~eRL~~R~------------- 267 (346)
..+...+ ..+..+++|++|....+... .... ..++++..| .+++.+|+.+|+
T Consensus 95 ---~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p-~e~~~~Rl~~R~~~~~~g~~y~~~~ 170 (243)
T 3tlx_A 95 ---SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVP-DEVLVNRISGRLIHKPSGRIYHKIF 170 (243)
T ss_dssp ---HHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTT
T ss_pred ---HHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCC-HHHHHHHHHcCCCCcccCccccccc
Confidence 1111111 23677999987776554422 1122 233444443 689999998664
Q ss_pred --------------------CCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHH
Q 019061 268 --------------------TETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 268 --------------------~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
+++++.+++|+..|..+ ..+|...+.+..|.++.+++++++++.+++.
T Consensus 171 ~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 171 NPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 47899999999999877 3455445566778888899999998887764
No 49
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.14 E-value=1.1e-10 Score=107.44 Aligned_cols=179 Identities=12% Similarity=0.049 Sum_probs=99.5
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc-ccccCCeeEEeeCh-hHHHHHHhcc
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-AMEKDGVHYHFTER-SVMEKAIKDG 197 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~-~~~~~g~~y~f~s~-~~~~~~~~~~ 197 (346)
..+..+.++...+|++++|+||||||||||+++|++..++..| .+........ ......++|+|+.. ..+.. .
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~----~ 94 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG-DVLYDGERKKGYEIRRNIGIAFQYPEDQFFA----E 94 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCHHHHGGGEEEECSSGGGGCCC----S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEECCEECchHHhhhhEEEEeccchhhcCC----C
Confidence 3455566677889999999999999999999999999998888 5543221111 01123578998874 23222 2
Q ss_pred chhhhhhhhcccc-CC--cHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHH--HHHHcCCCCCHH
Q 019061 198 KFLEFASVHGNLY-GT--SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELE--ERLRARGTETED 272 (346)
Q Consensus 198 ~~~e~~~~~~~~y-g~--~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~--eRL~~R~~~~~e 272 (346)
++.++..+....+ .. ..+.+.++++.- .+. +.+..+....+.
T Consensus 95 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~---------------------------------gl~~~~~~~~~~~~LSg 141 (266)
T 2yz2_A 95 RVFDEVAFAVKNFYPDRDPVPLVKKAMEFV---------------------------------GLDFDSFKDRVPFFLSG 141 (266)
T ss_dssp SHHHHHHHTTTTTCTTSCSHHHHHHHHHHT---------------------------------TCCHHHHTTCCGGGSCH
T ss_pred cHHHHHHHHHHhcCCHHHHHHHHHHHHHHc---------------------------------CcCCcccccCChhhCCH
Confidence 4555554432111 11 112222222210 011 111122233478
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 273 ~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
+.+||+..+++.+... ..-++|+....-|... ...+.+++..+... +.+++++.|+.+.+..+|
T Consensus 142 Gq~qRv~lAraL~~~p-~lllLDEPts~LD~~~-~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~ 205 (266)
T 2yz2_A 142 GEKRRVAIASVIVHEP-DILILDEPLVGLDREG-KTDLLRIVEKWKTL--GKTVILISHDIETVINHV 205 (266)
T ss_dssp HHHHHHHHHHHHTTCC-SEEEEESTTTTCCHHH-HHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGC
T ss_pred HHHHHHHHHHHHHcCC-CEEEEcCccccCCHHH-HHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhC
Confidence 9999999998776541 1111222222235533 35566777766432 445557788777666554
No 50
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.11 E-value=5.6e-11 Score=108.33 Aligned_cols=172 Identities=17% Similarity=0.147 Sum_probs=92.7
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhccchhh
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~~~~e 201 (346)
.++...+|++++|+||||||||||+++|.+.+++. | .+........ .......+|+|+....+..+ ++.+
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~----tv~e 92 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-G-SIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT----PVWH 92 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-E-EEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTC----BHHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-e-EEEECCEECCcCCHHHHhceEEEECCCCccCCCC----cHHH
Confidence 44566799999999999999999999999999988 8 5543222111 11123478898876554432 5555
Q ss_pred hhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 019061 202 FASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (346)
Q Consensus 202 ~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~ 281 (346)
+..+.. .+....+.+.+.++.-. +.+.+..+....+.+.+||+..+
T Consensus 93 ~l~~~~-~~~~~~~~~~~~l~~~~---------------------------------l~~~~~~~~~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 93 YLTLHQ-HDKTRTELLNDVAGALA---------------------------------LDDKLGRSTNQLSGGEWQRVRLA 138 (249)
T ss_dssp HHHTTC-SSTTCHHHHHHHHHHTT---------------------------------CGGGTTSBGGGCCHHHHHHHHHH
T ss_pred HHHHhh-ccCCcHHHHHHHHHHcC---------------------------------ChhHhcCChhhCCHHHHHHHHHH
Confidence 554432 11112222333322100 00111112233468888999888
Q ss_pred HHHHHhccCCC-CceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 282 KEEIKQGKSSG-IFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 282 ~~~i~~~~~~~-~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
++.+....... ....++-++ |+.. ...+.+++..+... +..++.+.|+.+.+..+|
T Consensus 139 raL~~~p~~~~~~~~lllLDEPts~LD~~~-~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~ 200 (249)
T 2qi9_C 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQ-QSALDKILSALSQQ--GLAIVMSSHDLNHTLRHA 200 (249)
T ss_dssp HHHHHHCTTTCTTCCEEEESSTTTTCCHHH-HHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHC
T ss_pred HHHHcCCCcCCCCCeEEEEECCcccCCHHH-HHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhC
Confidence 87766521000 000333332 4433 34566666666432 334446677666554443
No 51
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.11 E-value=2.9e-11 Score=109.60 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=52.6
Q ss_pred EeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc--cccccCCeeEEeeChhHHHHHHhccchh
Q 019061 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (346)
Q Consensus 123 ~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~g~~y~f~s~~~~~~~~~~~~~~ 200 (346)
..+.++...+ ++++|+||||||||||+++|.+..+|..| .+....... .......++|+|+....+..+ ++.
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~l----tv~ 88 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRG-EVRLNGADITPLPPERRGIGFVPQDYALFPHL----SVY 88 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCTTTSCCBCCCSSCCCCTTS----CHH
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCchhhCcEEEEcCCCccCCCC----cHH
Confidence 4445566778 99999999999999999999999998888 443221111 011124578888876555443 555
Q ss_pred hhhhhh
Q 019061 201 EFASVH 206 (346)
Q Consensus 201 e~~~~~ 206 (346)
++..+.
T Consensus 89 enl~~~ 94 (240)
T 2onk_A 89 RNIAYG 94 (240)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 555543
No 52
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.11 E-value=3.2e-10 Score=103.17 Aligned_cols=182 Identities=16% Similarity=0.128 Sum_probs=100.0
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHh
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIK 195 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~ 195 (346)
..+..+.++.+.+|++++|+||||||||||+++|++.+++..| .|........ ......++|+|+...+|.
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~---- 96 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG-QVLIDGHDLALADPNWLRRQVGVVLQDNVLLN---- 96 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTSCHHHHHHHEEEECSSCCCTT----
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHHHhcEEEEeCCCcccc----
Confidence 4556666677889999999999999999999999999998888 5533221110 111234789988765542
Q ss_pred ccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHH
Q 019061 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (346)
Q Consensus 196 ~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~ 275 (346)
.++.++..+... ....+.+.++++.. ++..+....+ ..++..+..+....+.+.+
T Consensus 97 -~tv~enl~~~~~--~~~~~~~~~~l~~~----------~l~~~~~~~~------------~gl~~~~~~~~~~LSgGq~ 151 (247)
T 2ff7_A 97 -RSIIDNISLANP--GMSVEKVIYAAKLA----------GAHDFISELR------------EGYNTIVGEQGAGLSGGQR 151 (247)
T ss_dssp -SBHHHHHTTTCT--TCCHHHHHHHHHHH----------TCHHHHHTST------------TGGGCBCSTTTTCCCHHHH
T ss_pred -ccHHHHHhccCC--CCCHHHHHHHHHHh----------ChHHHHHhCc------------chhhhhhhCCCCCCCHHHH
Confidence 255666554321 11222232222210 0000000000 0111112233345688999
Q ss_pred HHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccch
Q 019061 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLT 336 (346)
Q Consensus 276 ~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~ 336 (346)
||+..+++.+... ..-++|+...+-|... ...+.+++..+. . +.+++++.|..+..
T Consensus 152 qRv~iAraL~~~p-~lllLDEPts~LD~~~-~~~i~~~l~~~~--~-g~tviivtH~~~~~ 207 (247)
T 2ff7_A 152 QRIAIARALVNNP-KILIFDEATSALDYES-EHVIMRNMHKIC--K-GRTVIIIAHRLSTV 207 (247)
T ss_dssp HHHHHHHHHTTCC-SEEEECCCCSCCCHHH-HHHHHHHHHHHH--T-TSEEEEECSSGGGG
T ss_pred HHHHHHHHHhcCC-CEEEEeCCcccCCHHH-HHHHHHHHHHHc--C-CCEEEEEeCCHHHH
Confidence 9999998776541 1112233333335543 345667776663 2 44454677776644
No 53
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.09 E-value=1.4e-10 Score=106.43 Aligned_cols=172 Identities=15% Similarity=0.029 Sum_probs=93.8
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc-cccCCee-EEeeChhHHHHHHhcc
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVH-YHFTERSVMEKAIKDG 197 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~g~~-y~f~s~~~~~~~~~~~ 197 (346)
..+..+.++... |++++|+||||||||||+++|++.. |..| .+......... ......+ |+|+.... . .
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G-~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~----~ 88 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG-NIFINGMEVRKIRNYIRYSTNLPEAYEI--G----V 88 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEE-EEEETTEEGGGCSCCTTEEECCGGGSCT--T----S
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCc-EEEECCEECcchHHhhheEEEeCCCCcc--C----C
Confidence 345555667788 9999999999999999999999999 8888 44322111100 1134577 88776543 2 2
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHH-HHHHcCCCCCHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELE-ERLRARGTETEDQILK 276 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~-eRL~~R~~~~~e~i~~ 276 (346)
++.++..+....+....+.+.+.++. .. +. +.+..+....+.+.+|
T Consensus 89 tv~enl~~~~~~~~~~~~~~~~~l~~------------------~g---------------l~~~~~~~~~~~LSgGqkq 135 (263)
T 2pjz_A 89 TVNDIVYLYEELKGLDRDLFLEMLKA------------------LK---------------LGEEILRRKLYKLSAGQSV 135 (263)
T ss_dssp BHHHHHHHHHHHTCCCHHHHHHHHHH------------------TT---------------CCGGGGGSBGGGSCHHHHH
T ss_pred cHHHHHHHhhhhcchHHHHHHHHHHH------------------cC---------------CChhHhcCChhhCCHHHHH
Confidence 55555544322222222222222221 00 00 1112222345789999
Q ss_pred HHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhhh
Q 019061 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLLC 340 (346)
Q Consensus 277 Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (346)
|+..+++.+... ..-++|+....-|... .+.+.+++..+. . .++.+.|+.+....+|
T Consensus 136 Rv~lAraL~~~p-~lllLDEPts~LD~~~-~~~l~~~L~~~~---~--tviivtHd~~~~~~~~ 192 (263)
T 2pjz_A 136 LVRTSLALASQP-EIVGLDEPFENVDAAR-RHVISRYIKEYG---K--EGILVTHELDMLNLYK 192 (263)
T ss_dssp HHHHHHHHHTCC-SEEEEECTTTTCCHHH-HHHHHHHHHHSC---S--EEEEEESCGGGGGGCT
T ss_pred HHHHHHHHHhCC-CEEEEECCccccCHHH-HHHHHHHHHHhc---C--cEEEEEcCHHHHHHhc
Confidence 999998776541 1111222222234433 345556665553 2 4446778777655444
No 54
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.08 E-value=1.2e-10 Score=107.83 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=53.3
Q ss_pred HHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc------ccccCCeeEEeeCh
Q 019061 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTER 187 (346)
Q Consensus 114 ~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~g~~y~f~s~ 187 (346)
.+.|+...+..+.++.+.+|++++|+||||||||||+++|++.+++..| .|........ ......++|+|+..
T Consensus 28 ~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~ 106 (279)
T 2ihy_A 28 GRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG-TVNLFGKMPGKVGYSAETVRQHIGFVSHSL 106 (279)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTBCCC---CCHHHHHTTEEEECHHH
T ss_pred EEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCe-EEEECCEEcccccCCHHHHcCcEEEEEcCc
Confidence 3456656666667777889999999999999999999999999999888 5543222111 11134588988865
Q ss_pred h
Q 019061 188 S 188 (346)
Q Consensus 188 ~ 188 (346)
.
T Consensus 107 ~ 107 (279)
T 2ihy_A 107 L 107 (279)
T ss_dssp H
T ss_pred c
Confidence 3
No 55
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.07 E-value=2.1e-10 Score=104.48 Aligned_cols=187 Identities=12% Similarity=0.130 Sum_probs=94.4
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccc--cCCCccceeeecCCcc-----cccccCCeeEEeeCh
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE--FPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER 187 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~--~~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~ 187 (346)
+.|+...+..+.+++..+|++++|+||||||||||++.|.+. +++..| .+....... ......+.+|+|+..
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G-~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 89 (250)
T 2d2e_A 11 ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG-EILLDGENILELSPDERARKGLFLAFQYP 89 (250)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEE-EEEETTEECTTSCHHHHHHTTBCCCCCCC
T ss_pred EEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCce-EEEECCEECCCCCHHHHHhCcEEEeccCC
Confidence 345555566666677889999999999999999999999997 666667 443222111 111123466777766
Q ss_pred hHHHHHHhccchhhhhhhhcc-ccC--CcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHH-HHHH
Q 019061 188 SVMEKAIKDGKFLEFASVHGN-LYG--TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEEL-EERL 263 (346)
Q Consensus 188 ~~~~~~~~~~~~~e~~~~~~~-~yg--~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l-~eRL 263 (346)
..++.+ ++.++..+... .++ .......+.... .+..+ .+ .+..
T Consensus 90 ~~~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~------------------gl~~~~~ 136 (250)
T 2d2e_A 90 VEVPGV----TIANFLRLALQAKLGREVGVAEFWTKVKK-----------ALELL------------------DWDESYL 136 (250)
T ss_dssp C-CCSC----BHHHHHHHHHHHHHTSCCCHHHHHHHHHH-----------HHHHH------------------TCCGGGG
T ss_pred ccccCC----CHHHHHHHHHHhhccccCCHHHHHHHHHH-----------HHHHc------------------CCChhHh
Confidence 544322 33333322110 011 111111110000 00000 01 0111
Q ss_pred HcCCCC-CHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccchhhh
Q 019061 264 RARGTE-TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLTSLL 339 (346)
Q Consensus 264 ~~R~~~-~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~~~~ 339 (346)
..+... .+.+.+||+..+++.+... ..-++|+....-|... ...+.+++..+.. .+..++.+.|+.+....+
T Consensus 137 ~~~~~~~LSgGqkQrv~iAraL~~~p-~lllLDEPts~LD~~~-~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~ 209 (250)
T 2d2e_A 137 SRYLNEGFSGGEKKRNEILQLLVLEP-TYAVLDETDSGLDIDA-LKVVARGVNAMRG--PNFGALVITHYQRILNYI 209 (250)
T ss_dssp GSBTTCC----HHHHHHHHHHHHHCC-SEEEEECGGGTTCHHH-HHHHHHHHHHHCS--TTCEEEEECSSSGGGGTS
T ss_pred cCCcccCCCHHHHHHHHHHHHHHcCC-CEEEEeCCCcCCCHHH-HHHHHHHHHHHHh--cCCEEEEEecCHHHHHHh
Confidence 122233 6889999999999877652 1111223333335543 3456677777643 244555788887766554
No 56
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.07 E-value=8.6e-10 Score=97.40 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=62.8
Q ss_pred CCceEEEecHHHH---HHHHc----CCCCe-EEEEEcCCCHHHHHHHHHcC-----------------------------
Q 019061 224 GKRCILDIDVQGA---RSVRA----SPLDA-IFIFICPPSMEELEERLRAR----------------------------- 266 (346)
Q Consensus 224 ~~~~iLD~~~~~~---~~l~~----~~~~~-~~ill~~p~~~~l~eRL~~R----------------------------- 266 (346)
+..+++|+.|... ..+.. ....+ .++++..| .+++.+|+..|
T Consensus 78 ~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 156 (216)
T 3dl0_A 78 ERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVD-KDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGE 156 (216)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-GGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHCCCcCCccCCccccccCCCcccCcccccccc
Confidence 6789999754433 22321 22222 44444444 58899999888
Q ss_pred ----CCCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 267 ----GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 267 ----~~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
.+++++.+++|+..+.++ .++|...+.+..|.++.+++++++++.+++..+
T Consensus 157 l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3dl0_A 157 LYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215 (216)
T ss_dssp EECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGGG
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 678899999999988765 333433344567778889999999988877643
No 57
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.06 E-value=1.2e-10 Score=109.25 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=101.5
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHh
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIK 195 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~ 195 (346)
..++.+.++.+.+|++++|+||||||||||++.|.+.+++..| .|....... .......++|+||...+|.
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~---- 141 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG-CIRIDGQDISQVTQASLRSHIGVVPQDTVLFN---- 141 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE-EEEETTEETTSBCHHHHHHTEEEECSSCCCCS----
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCc-EEEECCEEcccCCHHHHhcceEEEecCCccCc----
Confidence 3455566677889999999999999999999999999999888 554322111 1112346889999876552
Q ss_pred ccchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHH
Q 019061 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (346)
Q Consensus 196 ~~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~ 275 (346)
+++.++..+....+ ..+.+.++.+.... ...+... ...++..+..++...+.+.+
T Consensus 142 -~Tv~eNi~~~~~~~--~~~~~~~~~~~~~l---------~~~i~~l-------------p~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 142 -DTIADNIRYGRVTA--GNDEVEAAAQAAGI---------HDAIMAF-------------PEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp -EEHHHHHHTTSTTC--CHHHHHHHHHHHTC---------HHHHHHS-------------TTGGGCEESTTSBCCCHHHH
T ss_pred -ccHHHHHHhhcccC--CHHHHHHHHHHhCc---------HHHHHhc-------------cchhhhHhcCCcCCCCHHHH
Confidence 26666665533222 22333332221000 0000000 01122233344556689999
Q ss_pred HHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 276 ~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
||+..+++.+.... .-++|+....-|... ...+.+.+..+.. ..+++++.|..+
T Consensus 197 QRvaiARAL~~~p~-iLlLDEPts~LD~~~-~~~i~~~l~~l~~---~~Tvi~itH~l~ 250 (306)
T 3nh6_A 197 QRVAIARTILKAPG-IILLDEATSALDTSN-ERAIQASLAKVCA---NRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHHHHHHHCCS-EEEEECCSSCCCHHH-HHHHHHHHHHHHT---TSEEEEECCSHH
T ss_pred HHHHHHHHHHhCCC-EEEEECCcccCCHHH-HHHHHHHHHHHcC---CCEEEEEEcChH
Confidence 99999998876521 111233333335533 3456666666642 344446666554
No 58
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.05 E-value=1.4e-09 Score=95.96 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=62.6
Q ss_pred CCceEEEecHHHH---HHHHc----CCCCe-EEEEEcCCCHHHHHHHHHcC-----------------------------
Q 019061 224 GKRCILDIDVQGA---RSVRA----SPLDA-IFIFICPPSMEELEERLRAR----------------------------- 266 (346)
Q Consensus 224 ~~~~iLD~~~~~~---~~l~~----~~~~~-~~ill~~p~~~~l~eRL~~R----------------------------- 266 (346)
+..+++|+.|... ..+.. ....+ .++++..| .+++.+|+..|
T Consensus 78 ~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 156 (216)
T 3fb4_A 78 QKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVE-QEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGE 156 (216)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCc
Confidence 6788999654433 33322 22223 44454444 78999999988
Q ss_pred ----CCCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 267 ----GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 267 ----~~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
.+++++.+++|+..+.++ ..+|...+.+..|.++.+++++++++.+++..+
T Consensus 157 l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3fb4_A 157 LYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL 215 (216)
T ss_dssp EECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTC
T ss_pred cccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 567889999999988766 233333445567777889999999988887643
No 59
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.03 E-value=4.8e-10 Score=103.36 Aligned_cols=80 Identities=19% Similarity=0.107 Sum_probs=54.8
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKD 196 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~ 196 (346)
.+..+.++.+.+|++++|+||||||||||+++|++.+++..| .|........ ......++|+|+...+|.
T Consensus 33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~----- 106 (271)
T 2ixe_A 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG-KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG----- 106 (271)
T ss_dssp CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-----
T ss_pred eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC-EEEECCEEcccCCHHHHhccEEEEecCCcccc-----
Confidence 345556677889999999999999999999999999998888 5443221111 111234789988765542
Q ss_pred cchhhhhhhh
Q 019061 197 GKFLEFASVH 206 (346)
Q Consensus 197 ~~~~e~~~~~ 206 (346)
.++.++..+.
T Consensus 107 ~tv~enl~~~ 116 (271)
T 2ixe_A 107 RSFRENIAYG 116 (271)
T ss_dssp SBHHHHHHTT
T ss_pred ccHHHHHhhh
Confidence 2566665543
No 60
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.00 E-value=2e-09 Score=93.16 Aligned_cols=173 Identities=16% Similarity=0.257 Sum_probs=91.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
++.+++|+|++||||||+++.|...+.. ....+....+.....+.. ....+...+..+....... .+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~----~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~----~~~ 75 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY----THLSTGDLLRSEVSSGSA----RGKKLSEIMEKGQLVPLET----VLD 75 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC----EEEEHHHHHHHHHHTTCH----HHHHHHHHHHTTCCCCHHH----HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC----eEEcHHHHHHHHHHcCCh----HHHHHHHHHHcCCcCCHHH----HHH
Confidence 5789999999999999999999876531 111111000000000000 0011111111122111100 011
Q ss_pred CcHHHHHHHHHhCCceEEEecHHHHHHH---Hc-CCCCeEEEEEcCCCHHHHHHHHHcCC------CCCHHHHHHHHHHH
Q 019061 212 TSVEAVEAVADAGKRCILDIDVQGARSV---RA-SPLDAIFIFICPPSMEELEERLRARG------TETEDQILKRLRNA 281 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~~~~~~~~l---~~-~~~~~~~ill~~p~~~~l~eRL~~R~------~~~~e~i~~Rl~~~ 281 (346)
.....+......+..+++|+.+....+. .. ......++++.. +.+++.+|+..|+ +++.+.+++|+..+
T Consensus 76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~-~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~ 154 (196)
T 2c95_A 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDA-GPETMTQRLLKRGETSGRVDDNEETIKKRLETY 154 (196)
T ss_dssp HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEEC-CHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEEC-CHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHH
Confidence 1122233333467889999755443332 21 122234555554 4788999988764 24577888898877
Q ss_pred HHHHH----hccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 282 KEEIK----QGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 282 ~~~i~----~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
..+.. .|...+.+..|..+.+++++.+++.+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 155 YKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 65432 2222233334566679999999988887654
No 61
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.00 E-value=2.9e-09 Score=95.64 Aligned_cols=175 Identities=18% Similarity=0.224 Sum_probs=94.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccch-hhhh---hh
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF-LEFA---SV 205 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~-~e~~---~~ 205 (346)
..+|.+++|.|++||||||+++.|...+.. |..+.. ++.+...+. ...+...+..+.. .+.. .+
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~-~~~p~~~~~---------g~~i~~~~~~~~~~~~~~~~ll~ 90 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIM-TREPGGVPT---------GEEIRKIVLEGNDMDIRTEAMLF 90 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEE-ECTTTTCHH---------HHHHHHHTTC---CCHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcee-ecCCCCCch---------HHHHHHHHhCCCCCCHHHHHHHH
Confidence 347899999999999999999999998875 434432 222211100 1122222222211 1000 01
Q ss_pred hccccCCcHHHHHHHHHhCCceEEE----------e-----cHHHHHHH---HcCCCCe-EEEEEcCCCHHHHHHHHHcC
Q 019061 206 HGNLYGTSVEAVEAVADAGKRCILD----------I-----DVQGARSV---RASPLDA-IFIFICPPSMEELEERLRAR 266 (346)
Q Consensus 206 ~~~~yg~~~~~i~~~~~~~~~~iLD----------~-----~~~~~~~l---~~~~~~~-~~ill~~p~~~~l~eRL~~R 266 (346)
....+....+.+...+..+..+++| + +......+ ......+ .++++..| .+++.+|+..|
T Consensus 91 ~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~-~e~~~~R~~~R 169 (229)
T 4eaq_A 91 AASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKN 169 (229)
T ss_dssp HHHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhc
Confidence 1100000001123445678889999 4 22222222 2222233 34444444 68999999888
Q ss_pred CCC------CHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 267 GTE------TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 267 ~~~------~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
+.. ....+.+|+.....++.... +..+..|.++.+++++.+++.+++..+.
T Consensus 170 ~~~~dr~e~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eev~~~I~~~l~~~l 226 (229)
T 4eaq_A 170 SRDQNRLDQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNADQPLENVVEDTYQTIIKYL 226 (229)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHTTTC-TTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 421 24466777776555543322 2345677788899999999998887653
No 62
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.98 E-value=1.8e-09 Score=109.87 Aligned_cols=180 Identities=13% Similarity=0.092 Sum_probs=104.1
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKD 196 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~ 196 (346)
.+..+.++...+|++++|+||||||||||++.|.+.++|..| .+.....+. ........+|++|...+|.
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~----- 430 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG-SICLDGHDVRDYKLTNLRRHFALVSQNVHLFN----- 430 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC-EEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-----
Confidence 344555677789999999999999999999999999999888 443222111 1112346889999876654
Q ss_pred cchhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHH
Q 019061 197 GKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (346)
Q Consensus 197 ~~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~ 276 (346)
+++.++..+... .....+.+.++++... +....... .+.++.++..++..-+.+.+|
T Consensus 431 ~tv~eni~~~~~-~~~~~~~~~~~~~~~~----------l~~~~~~~------------p~g~~t~~~~~~~~LSgGq~q 487 (582)
T 3b5x_A 431 DTIANNIAYAAE-GEYTREQIEQAARQAH----------AMEFIENM------------PQGLDTVIGENGTSLSGGQRQ 487 (582)
T ss_pred ccHHHHHhccCC-CCCCHHHHHHHHHHCC----------CHHHHHhC------------cccccchhcCCCCcCCHHHHH
Confidence 256666655321 1122333443333211 00000000 123444555666677899999
Q ss_pred HHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 277 Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
|+..+++.+... +.-++|+...+-|.+. .+.+.+.+..+.+ +.+.+.+.|..+
T Consensus 488 r~~iAral~~~p-~illlDEpts~LD~~~-~~~i~~~l~~~~~---~~tvi~itH~~~ 540 (582)
T 3b5x_A 488 RVAIARALLRDA-PVLILDEATSALDTES-ERAIQAALDELQK---NKTVLVIAHRLS 540 (582)
T ss_pred HHHHHHHHHcCC-CEEEEECccccCCHHH-HHHHHHHHHHHcC---CCEEEEEecCHH
Confidence 999998776542 1112333333335543 3456666666532 344446667654
No 63
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.98 E-value=5.3e-09 Score=93.85 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=51.8
Q ss_pred CCceEEEecHHHHHHH---HcCCCCe-EEEEEcCCCHHHHHHHHHcC---------------------------------
Q 019061 224 GKRCILDIDVQGARSV---RASPLDA-IFIFICPPSMEELEERLRAR--------------------------------- 266 (346)
Q Consensus 224 ~~~~iLD~~~~~~~~l---~~~~~~~-~~ill~~p~~~~l~eRL~~R--------------------------------- 266 (346)
...++||+.|....+. ......+ .++++.. +.+++.+|+.+|
T Consensus 86 ~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldv-p~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R 164 (230)
T 3gmt_A 86 ANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDV-PFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR 164 (230)
T ss_dssp TTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECC-CHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred CCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeC-CHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence 4579999987765544 3333333 3444444 478888988765
Q ss_pred CCCCHHHHHHHHHHHHHH----HHhccCC-----------CCceEEEcCCCHHHHHHHHHHHHH
Q 019061 267 GTETEDQILKRLRNAKEE----IKQGKSS-----------GIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 267 ~~~~~e~i~~Rl~~~~~~----i~~~~~~-----------~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
.+++++.+++|++.|.++ +++|... +.+..|.++.+++++++++.+++.
T Consensus 165 ~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~ 228 (230)
T 3gmt_A 165 DDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV 228 (230)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 356899999999999877 5566531 567788888899999998887654
No 64
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.97 E-value=5.7e-10 Score=107.93 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=54.2
Q ss_pred CCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHH
Q 019061 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKA 193 (346)
Q Consensus 118 g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~ 193 (346)
+...+..+.++.+.+|++++|+||||||||||+++|++..+ ..| .|....+.. .......++|+||+..+|. +
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G-~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEE-EEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCe-EEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 33344555566788999999999999999999999999987 667 554322211 1111346889999876653 1
Q ss_pred Hhccchhhhhh
Q 019061 194 IKDGKFLEFAS 204 (346)
Q Consensus 194 ~~~~~~~e~~~ 204 (346)
++.++..
T Consensus 109 ----tv~enl~ 115 (390)
T 3gd7_A 109 ----TFRKNLD 115 (390)
T ss_dssp ----EHHHHHC
T ss_pred ----CHHHHhh
Confidence 4555543
No 65
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.97 E-value=2.4e-09 Score=98.05 Aligned_cols=179 Identities=12% Similarity=0.081 Sum_probs=97.6
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|++++|+||||||||||+++|.+.+++ .| .+........ ......++|+|+...+|. .
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-----~ 107 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EG-DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-----E 107 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EE-EEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-----E
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-Ce-EEEECCEEhhhcCHHHHhccEEEEcCCCcccc-----c
Confidence 44445566789999999999999999999999999876 67 5543222111 111346889998865542 2
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
++.++..+.. . ....+.+.+.++.... ...+... | ..++.++..+....+.+.+||
T Consensus 108 tv~enl~~~~-~-~~~~~~~~~~l~~~~l---------~~~~~~l-----------~--~~~~~~~~~~~~~LSgGqkqR 163 (260)
T 2ghi_A 108 TIKYNILYGK-L-DATDEEVIKATKSAQL---------YDFIEAL-----------P--KKWDTIVGNKGMKLSGGERQR 163 (260)
T ss_dssp EHHHHHHTTC-T-TCCHHHHHHHHHHTTC---------HHHHHTS-----------T--TGGGCEESSSSBCCCHHHHHH
T ss_pred CHHHHHhccC-C-CCCHHHHHHHHHHhCC---------HHHHHhc-----------c--ccccccccCCcCcCCHHHHHH
Confidence 5556554422 1 1122222222221000 0000000 0 001111222334567899999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccch
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLT 336 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~ 336 (346)
+..+++.+... ..-++|+....-|... ...+.+++..+.. +.+++++.|+.+..
T Consensus 164 v~lAraL~~~p-~lllLDEPts~LD~~~-~~~i~~~l~~l~~---~~tviivtH~~~~~ 217 (260)
T 2ghi_A 164 IAIARCLLKDP-KIVIFDEATSSLDSKT-EYLFQKAVEDLRK---NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHHHCC-SEEEEECCCCTTCHHH-HHHHHHHHHHHTT---TSEEEEECSSGGGS
T ss_pred HHHHHHHHcCC-CEEEEECccccCCHHH-HHHHHHHHHHhcC---CCEEEEEcCCHHHH
Confidence 99999877652 1112333334446544 4556677776642 34555777876644
No 66
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.95 E-value=1.3e-08 Score=85.64 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=57.0
Q ss_pred HhCCceEEEec--HHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCC----CCHHHHHHHHHHHHHH-HHhccCCCCc
Q 019061 222 DAGKRCILDID--VQGARSVRASPLDAIFIFICPPSMEELEERLRARGT----ETEDQILKRLRNAKEE-IKQGKSSGIF 294 (346)
Q Consensus 222 ~~~~~~iLD~~--~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~----~~~e~i~~Rl~~~~~~-i~~~~~~~~~ 294 (346)
..+..+++|+. +.....+......+..++....+.+.+.+|+..|+. .+.+.+.+|+...... ...+ ....
T Consensus 76 ~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~a 153 (179)
T 3lw7_A 76 SNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEV--IAMA 153 (179)
T ss_dssp CCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHH--HHTC
T ss_pred cCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhH--HHhC
Confidence 45678899974 333444443332344344444458999999999975 5677888887442211 1111 1224
Q ss_pred eEEEcCC-CHHHHHHHHHHHHHHh
Q 019061 295 DHILYND-KLEECYENLKVICYCL 317 (346)
Q Consensus 295 ~~Vi~n~-~le~~~~~l~~iI~~l 317 (346)
+.++.|+ +++++.+++.+++..+
T Consensus 154 d~vId~~~~~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 154 DYIITNDSNYEEFKRRCEEVTDRV 177 (179)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHHH
Confidence 5666665 9999999998888765
No 67
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.95 E-value=1.1e-11 Score=112.47 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=52.9
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|++++|+||||||||||+++|.+.+++..| .|...... ........++|+|+...+|. .
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-----~ 90 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG-EITIDGQPIDNISLENWRSQIGFVSQDSAIMA-----G 90 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS-CEEETTEESTTTSCSCCTTTCCEECCSSCCCC-----E
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-----c
Confidence 34445566789999999999999999999999999998888 44321111 11112245789998865542 2
Q ss_pred chhhhhhh
Q 019061 198 KFLEFASV 205 (346)
Q Consensus 198 ~~~e~~~~ 205 (346)
++.++..+
T Consensus 91 tv~enl~~ 98 (243)
T 1mv5_A 91 TIRENLTY 98 (243)
T ss_dssp EHHHHTTS
T ss_pred cHHHHHhh
Confidence 55555544
No 68
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.94 E-value=1.5e-09 Score=98.01 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=50.5
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e 201 (346)
+..+.++.+.+|++++|+||||||||||++.|++.+++..| .|.... .++|+|+....+ ..++.+
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g---------~i~~v~Q~~~~~-----~~tv~e 84 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVAIKG---------SVAYVPQQAWIQ-----NDSLRE 84 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEE-EEEECS---------CEEEECSSCCCC-----SEEHHH
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECC---------EEEEEcCCCcCC-----CcCHHH
Confidence 44455567789999999999999999999999999988777 443211 377888875322 225566
Q ss_pred hhhhh
Q 019061 202 FASVH 206 (346)
Q Consensus 202 ~~~~~ 206 (346)
+..+.
T Consensus 85 nl~~~ 89 (237)
T 2cbz_A 85 NILFG 89 (237)
T ss_dssp HHHTT
T ss_pred HhhCc
Confidence 65543
No 69
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.93 E-value=1.6e-09 Score=99.62 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=51.6
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc--CCCccceeeecCCcc-----cccccCCeeEEeeCh
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER 187 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~--~~~~g~~i~~ttr~~-----~~~~~~g~~y~f~s~ 187 (346)
+.|+...+..+.++.+.+|++++|+||||||||||+++|++.. ++..| .+....... ......+++|+|+..
T Consensus 28 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~ 106 (267)
T 2zu0_C 28 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-TVEFKGKDLLALSPEDRAGEGIFMAFQYP 106 (267)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEE-EEEETTEEGGGSCHHHHHHHTEEEECSSC
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCcCCHHHHhhCCEEEEccCc
Confidence 4555556666677788899999999999999999999999983 45567 443322111 111123578888876
Q ss_pred hHHH
Q 019061 188 SVME 191 (346)
Q Consensus 188 ~~~~ 191 (346)
..++
T Consensus 107 ~l~~ 110 (267)
T 2zu0_C 107 VEIP 110 (267)
T ss_dssp CCCT
T ss_pred cccc
Confidence 5443
No 70
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.93 E-value=7.4e-09 Score=90.54 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc--cccCCeeEEeeChhHHHHHHhccchhhhhhhhcc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--MEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~--~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~ 208 (346)
.+|++++|+|||||||||+++.|.+.+ |............ ......++.|+....+..+ ...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~-------- 90 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWL----RSL-------- 90 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHH----HHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHH----HHH--------
Confidence 468999999999999999999998875 3222111110000 0000112333332221111 000
Q ss_pred ccCCcHHHHHHHHHhCCceEEEe---cHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Q 019061 209 LYGTSVEAVEAVADAGKRCILDI---DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET--EDQILKRLRNAKE 283 (346)
Q Consensus 209 ~yg~~~~~i~~~~~~~~~~iLD~---~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~--~e~i~~Rl~~~~~ 283 (346)
...+......+..+++|. .......++........+++.. +.+++.+|+..|+... .+.+++.+.
T Consensus 91 -----~~~~~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~-~~e~l~~Rl~~R~~~~~~~~~l~~~~~---- 160 (200)
T 4eun_A 91 -----AEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDG-PAEVIKGRMSKREGHFMPASLLQSQLA---- 160 (200)
T ss_dssp -----HHHHHHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEEC-CHHHHHHHHTTCSCCSSCGGGHHHHHH----
T ss_pred -----HHHHHHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeC-CHHHHHHHHHhcccCCCCHHHHHHHHH----
Confidence 111222334567788885 3333333333333344555554 4899999999886432 222222221
Q ss_pred HHHhccCCCCceEEEc-CCCHHHHHHHHHHHHH
Q 019061 284 EIKQGKSSGIFDHILY-NDKLEECYENLKVICY 315 (346)
Q Consensus 284 ~i~~~~~~~~~~~Vi~-n~~le~~~~~l~~iI~ 315 (346)
..... .....+.++. +.+++++.+++.+.+.
T Consensus 161 ~~~~~-~~~~~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 161 TLEAL-EPDESGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp HCCCC-CTTSCEEEEETTSCHHHHHHHHHHHHC
T ss_pred HhCCC-CCCCCeEEEECCCCHHHHHHHHHHHHH
Confidence 11111 1222455554 4588888887777654
No 71
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=1e-08 Score=89.50 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=81.1
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhh-hh
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS-VH 206 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~-~~ 206 (346)
+...+++.++|+|+|||||||+++.|++.+.. ....+ .+.... .......+... ..
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~----~~i~~------------------d~~~~~-~~g~~i~~~~~~~~ 76 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLNV----PFIDL------------------DWYIEE-RFHKTVGELFTERG 76 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHTC----CEEEH------------------HHHHHH-HHTSCHHHHHHHHH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcCC----CEEcc------------------hHHHHH-HhCCcHHHHHHhcC
Confidence 44567899999999999999999999987531 11111 011110 00001111100 00
Q ss_pred ccccCCcHHHHHHHHHhCCceEEEe------cHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHH-cC------CCCCHHH
Q 019061 207 GNLYGTSVEAVEAVADAGKRCILDI------DVQGARSVRASPLDAIFIFICPPSMEELEERLR-AR------GTETEDQ 273 (346)
Q Consensus 207 ~~~yg~~~~~i~~~~~~~~~~iLD~------~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~-~R------~~~~~e~ 273 (346)
...+......+...+.....++++. .......+.. ...++++..| .+++.+|+. .+ ...+.+.
T Consensus 77 ~~~~~~~e~~~l~~l~~~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~-~e~l~~Rl~~~~~~Rp~~~~~~~~~ 152 (199)
T 3vaa_A 77 EAGFRELERNMLHEVAEFENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVH-PDVLFRRLRIAKQQRPILQGKEDDE 152 (199)
T ss_dssp HHHHHHHHHHHHHHHTTCSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECC-HHHHHHHHHHTGGGCGGGTTCCHHH
T ss_pred hHHHHHHHHHHHHHHhhcCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECC-HHHHHHHHhcCCCCCCCcCCCChhh
Confidence 0011111111111122345566662 2222333322 2345555554 889999998 33 1344556
Q ss_pred HHHHHHHHHHHHH-hccCCCCceEEEcCC--CHHHHHHHHHHHHHHhh
Q 019061 274 ILKRLRNAKEEIK-QGKSSGIFDHILYND--KLEECYENLKVICYCLM 318 (346)
Q Consensus 274 i~~Rl~~~~~~i~-~~~~~~~~~~Vi~n~--~le~~~~~l~~iI~~l~ 318 (346)
+.+++.....+.. .|. . .+.++.++ +++++.+++.+.+..+.
T Consensus 153 ~~~~i~~~~~~r~~~y~--~-ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 153 LMDFIIQALEKRAPFYT--Q-AQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp HHHHHHHHHHHHHHHHT--T-SSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh--h-CCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 6666665554432 332 2 56666554 68999998888887653
No 72
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.87 E-value=2.3e-09 Score=96.30 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=50.6
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhh
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e 201 (346)
+..+.++...+|++++|+||||||||||+++|++.+++..| .+.... .++|+++...++. .++.+
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g---------~i~~v~q~~~~~~-----~tv~e 87 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-KIKHSG---------RISFCSQFSWIMP-----GTIKE 87 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEECS---------CEEEECSSCCCCS-----BCHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCcc-EEEECC---------EEEEEecCCcccC-----CCHHH
Confidence 44445566779999999999999999999999999998888 443211 3778888765432 25555
Q ss_pred hhhh
Q 019061 202 FASV 205 (346)
Q Consensus 202 ~~~~ 205 (346)
+..+
T Consensus 88 nl~~ 91 (229)
T 2pze_A 88 NIIF 91 (229)
T ss_dssp HHHT
T ss_pred Hhhc
Confidence 5544
No 73
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.86 E-value=2.4e-09 Score=108.88 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=102.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|++++|+||||||||||++.|.+.++|..| .+.....+. ........+|++|....|. +
T Consensus 358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-----~ 431 (582)
T 3b60_A 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG-HILMDGHDLREYTLASLRNQVALVSQNVHLFN-----D 431 (582)
T ss_dssp SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE-EEEETTEETTTBCHHHHHHTEEEECSSCCCCS-----S
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCC-eEEECCEEccccCHHHHHhhCeEEccCCcCCC-----C
Confidence 44455567789999999999999999999999999999888 554322111 1112245889999876543 2
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
++.++..+... .....+.+.++++.... ...+... .+.++..+..++..-+.+.+||
T Consensus 432 tv~eni~~~~~-~~~~~~~~~~~l~~~~l---------~~~~~~~-------------p~g~~~~~~~~~~~LSgGq~qr 488 (582)
T 3b60_A 432 TVANNIAYART-EEYSREQIEEAARMAYA---------MDFINKM-------------DNGLDTIIGENGVLLSGGQRQR 488 (582)
T ss_dssp BHHHHHHTTTT-SCCCHHHHHHHHHTTTC---------HHHHHHS-------------TTGGGSBCCTTSCSSCHHHHHH
T ss_pred CHHHHHhccCC-CCCCHHHHHHHHHHcCC---------HHHHHhc-------------cccccccccCCCCCCCHHHHHH
Confidence 66666655321 12233444444332110 0000000 0122333444556678999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeecccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTYPDL 335 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~ 335 (346)
+..+++.+... +.++-++ |.+. .+.+.+.+..+.+ +.+.+.+.|..+.
T Consensus 489 l~iAral~~~p------~illlDEpts~LD~~~-~~~i~~~l~~~~~---~~tvi~itH~~~~ 541 (582)
T 3b60_A 489 IAIARALLRDS------PILILDEATSALDTES-ERAIQAALDELQK---NRTSLVIAHRLST 541 (582)
T ss_dssp HHHHHHHHHCC------SEEEEETTTSSCCHHH-HHHHHHHHHHHHT---TSEEEEECSCGGG
T ss_pred HHHHHHHHhCC------CEEEEECccccCCHHH-HHHHHHHHHHHhC---CCEEEEEeccHHH
Confidence 99999887652 2333332 5433 3456667766642 4455467776653
No 74
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.86 E-value=2.6e-09 Score=108.53 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=101.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|++++|+||||||||||++.|.+.++|..| .+.....+.. .......+|++|+...|. +
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~ 429 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG-QILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-----D 429 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE-EEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-----S
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHHhhheEEEeCCCccCc-----c
Confidence 34445566789999999999999999999999999999888 5543222211 112346889999876543 2
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..|+..+.... ...+.+.++.+.... ...+... ...++.++..++..-+.+.+||
T Consensus 430 tv~eni~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~l-------------p~g~~t~~~~~g~~LSgGq~Qr 485 (578)
T 4a82_A 430 TVKENILLGRPT--ATDEEVVEAAKMANA---------HDFIMNL-------------PQGYDTEVGERGVKLSGGQKQR 485 (578)
T ss_dssp BHHHHHGGGCSS--CCHHHHHHHHHHTTC---------HHHHHTS-------------TTGGGCBCCGGGTTSCHHHHHH
T ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHhCc---------HHHHHhC-------------cchhhhhhccCCCcCCHHHHHH
Confidence 566665543211 122333333222110 0000000 0122333444555678999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccch
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDLT 336 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~~ 336 (346)
+..+++.+...+ .-++|+....-|.+ ..+.+.+.+..+.+ +.+.+.+.|..+..
T Consensus 486 v~lAral~~~p~-illlDEpts~LD~~-~~~~i~~~l~~~~~---~~t~i~itH~l~~~ 539 (578)
T 4a82_A 486 LSIARIFLNNPP-ILILDEATSALDLE-SESIIQEALDVLSK---DRTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHHHHHCCS-EEEEESTTTTCCHH-HHHHHHHHHHHHTT---TSEEEEECSSGGGT
T ss_pred HHHHHHHHcCCC-EEEEECccccCCHH-HHHHHHHHHHHHcC---CCEEEEEecCHHHH
Confidence 999998876521 01112222222554 34566666766632 34454677766543
No 75
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.85 E-value=2.8e-08 Score=86.66 Aligned_cols=173 Identities=20% Similarity=0.279 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccccc-ccCCeeEEeeChhHHHHHHhccchhhhhhhhccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAM-EKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~-~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~ 209 (346)
.+..+++|+|++||||||+++.|...+.. ....+....+.. ...+..+ ...+...+..+.+..... .
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~----~~i~~d~~~~~~~~~~~~~~----~~~i~~~~~~g~~~~~~~----~ 80 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF----VHLSAGDLLRAEQGRAGSQY----GELIKNCIKEGQIVPQEI----T 80 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC----EEEEHHHHHHHHHHSTTCSC----HHHHHHHHHTTCCCCHHH----H
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc----eEEeHHHHHHHHHhccCCHH----HHHHHHHHHcCCcCCHHH----H
Confidence 35578999999999999999999876531 211111000000 0011100 111222111222111100 0
Q ss_pred cCCcHHHHHHHHHhC-CceEEEecHHHHH---HHHcC-CCCeEEEEEcCCCHHHHHHHHHcCC------CCCHHHHHHHH
Q 019061 210 YGTSVEAVEAVADAG-KRCILDIDVQGAR---SVRAS-PLDAIFIFICPPSMEELEERLRARG------TETEDQILKRL 278 (346)
Q Consensus 210 yg~~~~~i~~~~~~~-~~~iLD~~~~~~~---~l~~~-~~~~~~ill~~p~~~~l~eRL~~R~------~~~~e~i~~Rl 278 (346)
+....+.+......+ ..+++|+.+.... .+... .....++++..| .+++.+|+..|+ +++.+.+++|+
T Consensus 81 ~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~ 159 (203)
T 1ukz_A 81 LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCP-EDIMLERLLERGKTSGRSDDNIESIKKRF 159 (203)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHHHHCCTTCSHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHHHHH
Confidence 111122333444455 5788887644322 23221 122345555554 688888887663 45678888898
Q ss_pred HHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHH
Q 019061 279 RNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 279 ~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
..+.+. ..+|.....+..|..+.+++++.+++.+++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 160 NTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 776543 12232233334456777999999998887754
No 76
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.85 E-value=2.1e-08 Score=87.56 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=80.4
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~ 212 (346)
..+++|+|++||||||+++.|.+.+.. ....+.... ....... ...+..........
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~----~~i~~d~~~-------------~~~~~~~-~~~g~~~~~~~~~~----- 74 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY----PFIEGDALH-------------PPENIRK-MSEGIPLTDDDRWP----- 74 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC----CEEEGGGGC-------------CHHHHHH-HHHTCCCCHHHHHH-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC----EEEeCCcCc-------------chhhHHH-HhcCCCCCchhhHH-----
Confidence 568999999999999999999887521 111110000 0000000 00011000000000
Q ss_pred cHHHHHHHHHhCCceEEEe---cHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHh
Q 019061 213 SVEAVEAVADAGKRCILDI---DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE--TEDQILKRLRNAKEEIKQ 287 (346)
Q Consensus 213 ~~~~i~~~~~~~~~~iLD~---~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~--~~e~i~~Rl~~~~~~i~~ 287 (346)
....+...+..+..+++|. .......+......+..++...++.+++.+|+..|+.. ..+.+++.+.. ...
T Consensus 75 ~~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~----~~~ 150 (202)
T 3t61_A 75 WLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLET----LED 150 (202)
T ss_dssp HHHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHH----CCC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHh----cCC
Confidence 0122333335677888885 45555555554444333344444589999999887532 23333322221 111
Q ss_pred ccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 288 GKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 288 ~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
.........|..+.+++++.+++.+++...
T Consensus 151 ~~~~~~~~~Id~~~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 151 PRGEVRTVAVDVAQPLAEIVREALAGLARL 180 (202)
T ss_dssp CTTSTTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 111112334555669999999888888755
No 77
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.85 E-value=2.9e-08 Score=89.58 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhc----cch---hhhh
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKD----GKF---LEFA 203 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~----~~~---~e~~ 203 (346)
.+|.+++|.|++||||||+++.|...+.. .|..+..+||.+...+. .+.+...+.. ..+ .+..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~rep~~t~~---------g~~ir~~l~~~~~~~~~~~~~e~l 94 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTREPGGTLL---------AEKLRALVKEEHPGEELQDITELL 94 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHH---------HHHHHHHHHSCCTTSCCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeecCCCCCHH---------HHHHHHHHhhCCCcccCCHHHHHH
Confidence 46899999999999999999999887653 34343344554321110 1233332221 011 1111
Q ss_pred hhhccccCCcHHHHHHHHHhCCceEEEe---------------cHHHHHHHHc---CCCC-eEEEEEcCCCHHHHHHHHH
Q 019061 204 SVHGNLYGTSVEAVEAVADAGKRCILDI---------------DVQGARSVRA---SPLD-AIFIFICPPSMEELEERLR 264 (346)
Q Consensus 204 ~~~~~~yg~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l~~---~~~~-~~~ill~~p~~~~l~eRL~ 264 (346)
-|...-+....+.+...+..|..++.|= +.+.+..+.. ..+. ..++++..| .+++.+|+.
T Consensus 95 Lf~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~-~e~~~~Ri~ 173 (236)
T 3lv8_A 95 LVYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDID-PKLGLERAR 173 (236)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHH
Confidence 1222222222334555667899999992 2222222221 1222 344555444 689999998
Q ss_pred cCCC--C--C-HHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 265 ARGT--E--T-EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 265 ~R~~--~--~-~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
.|+. . . .....+|+.....++.... +. +..|.++.+++++.+++.+++..+.
T Consensus 174 ~R~~~dr~E~~~~~~~~rv~~~y~~la~~~-~~-~~vIDa~~sieeV~~~I~~~l~~~l 230 (236)
T 3lv8_A 174 GRGELDRIEKMDISFFERARERYLELANSD-DS-VVMIDAAQSIEQVTADIRRALQDWL 230 (236)
T ss_dssp ---CCCTTTTSCHHHHHHHHHHHHHHHHHC-TT-EEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred hcCCcchhhhhHHHHHHHHHHHHHHHHHHC-CC-EEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 8752 1 1 2356677765554443321 23 6778888899999999999888764
No 78
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.85 E-value=3.3e-09 Score=108.13 Aligned_cols=181 Identities=14% Similarity=0.116 Sum_probs=104.4
Q ss_pred EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhc
Q 019061 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKD 196 (346)
Q Consensus 121 v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~ 196 (346)
.+..+.++...+|++++|+||||||||||++.|.+.++|..| .+.....+.. .......+|++|...+|.
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~----- 431 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG-TISLDGHDIRQLNPVWLRSKIGTVSQEPILFS----- 431 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEE-EEEETTEETTTBCHHHHHHSEEEECSSCCCCS-----
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc-EEEECCEEhhhCCHHHHHhceEEEccCCcccC-----
Confidence 355556677889999999999999999999999999999888 5543221111 111245889999876543
Q ss_pred cchhhhhhhhcccc-CCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHH
Q 019061 197 GKFLEFASVHGNLY-GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (346)
Q Consensus 197 ~~~~e~~~~~~~~y-g~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~ 275 (346)
+++.++..+....+ +...+.+.++++.... ...-... .+.++.++..++...+.+.+
T Consensus 432 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~l------------~~g~~~~~~~~~~~LSgGq~ 489 (595)
T 2yl4_A 432 CSIAENIAYGADDPSSVTAEEIQRVAEVANA----------VAFIRNF------------PQGFNTVVGEKGVLLSGGQK 489 (595)
T ss_dssp SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTC----------HHHHHTS------------SSGGGCBCSSSSCCCCHHHH
T ss_pred CCHHHHHhhcCCCccccCHHHHHHHHHHcCC----------HHHHHhC------------cccccccccCCCCcCCHHHH
Confidence 26667666543221 1233444444332110 0000000 01223334445566789999
Q ss_pred HHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 276 ~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
||+..+++.+... +.-++|+....-|.+ ..+.+.+.+..+.. +.+.+.+.|..+
T Consensus 490 qrv~iAral~~~p-~illlDEpts~LD~~-~~~~i~~~l~~~~~---~~tvi~itH~~~ 543 (595)
T 2yl4_A 490 QRIAIARALLKNP-KILLLDEATSALDAE-NEYLVQEALDRLMD---GRTVLVIAHRLS 543 (595)
T ss_dssp HHHHHHHHHHHCC-SEEEEECCCSSCCHH-HHHHHHHHHHHHHT---TSEEEEECCCHH
T ss_pred HHHHHHHHHHcCC-CEEEEECcccCCCHH-HHHHHHHHHHHHhc---CCEEEEEecCHH
Confidence 9999999887652 111233333334654 34556667766643 344446677654
No 79
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.84 E-value=1e-08 Score=91.35 Aligned_cols=163 Identities=16% Similarity=0.189 Sum_probs=88.6
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCCcH
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSV 214 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~~~ 214 (346)
.++|+|++||||||+++.|...+. .....+....+. ...+.. .....+...+..+.+.... ...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg----~~~i~~dd~~r~-~~~~~~---~~g~~i~~~~~~g~~~~~~--------~~~ 65 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS----LAHIESGGIFRE-HIGGGT---ELGKKAKEFIDRGDLVPDD--------ITI 65 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT----CEEEEHHHHHHH-HTTTTC---HHHHHHHHHHTTTCCCCHH--------HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CeEEchHHHHHH-HHHcCC---HHHHHHHHHHHcCCcCcHH--------HHH
Confidence 589999999999999999988652 122111100010 000000 0001111111122111100 011
Q ss_pred HHHHHHHHh--CCceEEEecHHHH---HHHH----cCCCCe-EEEEEcCCCHHHHHHHHHcCCC----------------
Q 019061 215 EAVEAVADA--GKRCILDIDVQGA---RSVR----ASPLDA-IFIFICPPSMEELEERLRARGT---------------- 268 (346)
Q Consensus 215 ~~i~~~~~~--~~~~iLD~~~~~~---~~l~----~~~~~~-~~ill~~p~~~~l~eRL~~R~~---------------- 268 (346)
..+...+.. +..+++|+.+.+. ..+. .....+ .++++..| .+++.+|+..|+.
T Consensus 66 ~~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p 144 (223)
T 2xb4_A 66 PMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP-REVAKNRIMGRRICKNNPNHPNNIFIDAI 144 (223)
T ss_dssp HHHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTBCEESSCTTSCCBTTCGGG
T ss_pred HHHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcccCCccccCCccccccCCC
Confidence 224444445 8899999765542 2232 222222 34444444 6889999987751
Q ss_pred -------------------CCHH-HHHHHHHHHHHH----HH---hccC-----CCCceEEEcCCCHHHHHHHHHHHH
Q 019061 269 -------------------ETED-QILKRLRNAKEE----IK---QGKS-----SGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 269 -------------------~~~e-~i~~Rl~~~~~~----i~---~~~~-----~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
++.+ .+++|+..+.+. .. .|.. ...+..|.++.+++++++++.+++
T Consensus 145 ~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 145 KPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 2346 889999887765 44 5543 344567778889999998887654
No 80
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.83 E-value=5e-09 Score=94.06 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=95.9
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCC---ccceeeecCCcccccccCCeeEEeeChhHHHHHHhccch---hhhh
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF---LEFA 203 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~---~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~---~e~~ 203 (346)
..+|..++|.|++||||||+++.|...+... +|..+ .+||.+...+. .+.+...+..+.+ .+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t~~---------g~~ir~~l~~~~~~~~~~~l 91 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGTRL---------GETLREILLNQPMDLETEAL 91 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSSHH---------HHHHHHHHHHSCCCHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCChH---------HHHHHHHHHcCCCCHHHHHH
Confidence 3478999999999999999999998877532 15444 24444321110 1233333333321 1112
Q ss_pred hhhccccCCcHHHHHHHHHhCCceEEEe---------------cHHHHHHHHc---CCCC-eEEEEEcCCCHHHHHHHHH
Q 019061 204 SVHGNLYGTSVEAVEAVADAGKRCILDI---------------DVQGARSVRA---SPLD-AIFIFICPPSMEELEERLR 264 (346)
Q Consensus 204 ~~~~~~yg~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l~~---~~~~-~~~ill~~p~~~~l~eRL~ 264 (346)
-|....+....+.+...+..|..++.|= +.+.+..+.. ..+. ..++++..| .+++.+|+.
T Consensus 92 lf~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~-~e~~~~Ri~ 170 (227)
T 3v9p_A 92 LMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVP-PQIASARRG 170 (227)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-SSCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHH
Confidence 2323223322344566667889999992 2222322321 1222 334444444 478888988
Q ss_pred cCCC----CC-HHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 265 ARGT----ET-EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 265 ~R~~----~~-~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
.|+. +. .....+|+......+.... +..+..|.++.+++++.+++.+.+..|
T Consensus 171 ~R~~~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~~s~eeV~~~I~~~l~~l 227 (227)
T 3v9p_A 171 AVRMPDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSSEPIAQIRKQLEGVLAAL 227 (227)
T ss_dssp CCCCC---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred hccCccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 8751 22 2355566655444433211 334667888889999999988887653
No 81
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.82 E-value=2.7e-09 Score=108.67 Aligned_cols=178 Identities=15% Similarity=0.079 Sum_probs=100.0
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc----cccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++...+|++++|+||||||||||++.|.+.+++..| .+.....+... ......+|++|...+|. +
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~ 431 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG-RVEVDELDVRTVKLKDLRGHISAVPQETVLFS-----G 431 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE-EEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-----E
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCc-EEEECCEEcccCCHHHHHhheEEECCCCcCcC-----c
Confidence 34445566789999999999999999999999999999888 55433222211 11235889998876552 2
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..|+..+.... ...+.+.+..+.... ...+... .+.++..+..++..-+.+.+||
T Consensus 432 tv~eni~~~~~~--~~~~~~~~~~~~~~~---------~~~i~~l-------------~~g~~~~~~~~~~~LSgGqrQr 487 (587)
T 3qf4_A 432 TIKENLKWGRED--ATDDEIVEAAKIAQI---------HDFIISL-------------PEGYDSRVERGGRNFSGGQKQR 487 (587)
T ss_dssp EHHHHHTTTCSS--CCHHHHHHHHHHTTC---------HHHHHTS-------------SSGGGCEECSSSCSSCHHHHHH
T ss_pred cHHHHHhccCCC--CCHHHHHHHHHHhCc---------HHHHHhc-------------ccchhhHhcCCCCCcCHHHHHH
Confidence 566665543221 122333332222110 0000000 0122333445566678999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+..+++.+...+ .-++|+....-|.+. .+.+.+.+..+. .+.+.+.+.|..+
T Consensus 488 v~lARal~~~p~-illlDEpts~LD~~~-~~~i~~~l~~~~---~~~tvi~itH~l~ 539 (587)
T 3qf4_A 488 LSIARALVKKPK-VLILDDCTSSVDPIT-EKRILDGLKRYT---KGCTTFIITQKIP 539 (587)
T ss_dssp HHHHHHHHTCCS-EEEEESCCTTSCHHH-HHHHHHHHHHHS---TTCEEEEEESCHH
T ss_pred HHHHHHHHcCCC-EEEEECCcccCCHHH-HHHHHHHHHHhC---CCCEEEEEecChH
Confidence 999998875421 111222222235433 345666666653 2455546666554
No 82
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.81 E-value=3.4e-08 Score=87.68 Aligned_cols=175 Identities=16% Similarity=0.175 Sum_probs=96.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccc---h---hhhhh
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK---F---LEFAS 204 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~---~---~e~~~ 204 (346)
.+|.+++|.|++||||||+++.|...+.. .|..+ .+|+.+...+. .+.+...+..+. + .+..-
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v-~~~~~p~~~~~---------g~~i~~~l~~~~~~~~~~~~~~ll 72 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEV-QLTREPGGTPL---------AERIRELLLAPSDEPMAADTELLL 72 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCE-EEEESSCSSHH---------HHHHHHHHHSCCSSCCCHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCc-ccccCCCCCHH---------HHHHHHHHhcCCCCCCCHHHHHHH
Confidence 36889999999999999999999887753 34344 23343321100 122333333221 1 11111
Q ss_pred hhccccCCcHHHHHHHHHhCCceEEEe---------------cHHHHHHHHc---CCCCe-EEEEEcCCCHHHHHHHHHc
Q 019061 205 VHGNLYGTSVEAVEAVADAGKRCILDI---------------DVQGARSVRA---SPLDA-IFIFICPPSMEELEERLRA 265 (346)
Q Consensus 205 ~~~~~yg~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l~~---~~~~~-~~ill~~p~~~~l~eRL~~ 265 (346)
|...-+....+.+...+..|..++.|= +.+.+..+.. ..+.+ .++++..| .+++.+|+..
T Consensus 73 f~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~-~e~~~~Ri~~ 151 (213)
T 4edh_A 73 MFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLP-VEIGLARAAA 151 (213)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHh
Confidence 111111111233555567888888882 2222333321 12333 34444444 7899999988
Q ss_pred CCC-C-C---HHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 266 RGT-E-T---EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 266 R~~-~-~---~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
|+. + . .....+|+......+.... +..+..|.++.+++++.+++.+++..+.
T Consensus 152 R~~~dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eeV~~~I~~~l~~~l 208 (213)
T 4edh_A 152 RGRLDRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAGLPLAEVQAGLDRLLPNLL 208 (213)
T ss_dssp CSSCCTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred cCCcCcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 852 1 1 1355666655444433211 2346778888899999999988887653
No 83
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.80 E-value=1e-08 Score=95.41 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=47.0
Q ss_pred eEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHH
Q 019061 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 120 ~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~ 190 (346)
..+..+.++.+.+|++++|+||||||||||+++|.+.+++..| .+.... .++|+|+...++
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g---------~i~~v~Q~~~l~ 111 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-KIKHSG---------RISFCSQNSWIM 111 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEE-EEECCS---------CEEEECSSCCCC
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECC---------EEEEEeCCCccC
Confidence 3445556677889999999999999999999999999988777 443211 377888876543
No 84
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.80 E-value=2.5e-08 Score=86.29 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
.+.+++|+|++||||||+++.|...+.. ...++....+.....+.. ....+......+........ ..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~----~~ 78 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGF----THLSTGELLREELASESE----RSKLIRDIMERGDLVPSGIV----LE 78 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTC----EEEEHHHHHHHHHHHTCH----HHHHHHHHHHTTCCCCHHHH----HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC----eEEcHHHHHHHHHHhCCH----HHHHHHHHHHcCCcCCHHHH----HH
Confidence 4678999999999999999999886531 111110000000000000 00011111111111110000 00
Q ss_pred CcHHHHHHHHHhCCceEEEecHH---HHHHHHcCC-CCeEEEEEcCCCHHHHHHHHHcCCCC------CHHHHHHHHHHH
Q 019061 212 TSVEAVEAVADAGKRCILDIDVQ---GARSVRASP-LDAIFIFICPPSMEELEERLRARGTE------TEDQILKRLRNA 281 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~~~~---~~~~l~~~~-~~~~~ill~~p~~~~l~eRL~~R~~~------~~e~i~~Rl~~~ 281 (346)
...+.+......+..+++|+.+. ....+.... ....++++..| .+++.+|+..|+.. +.+.+++|+..+
T Consensus 79 ~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~ 157 (199)
T 2bwj_A 79 LLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCS-ADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAY 157 (199)
T ss_dssp HHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Confidence 01112222223567899996443 233333221 22345666554 78899999888642 246778887765
Q ss_pred HHHHH----hccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 282 KEEIK----QGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 282 ~~~i~----~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
..+.. .|.....+..+..+.+++++.+++.+++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 158 YRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 54432 2221222234445558999999888887654
No 85
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.79 E-value=1.5e-07 Score=82.04 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccc----hhhh---hh
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK----FLEF---AS 204 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~----~~e~---~~ 204 (346)
+|.+++|.|++||||||+++.|...+.. .| .+..+ +.+ . .+.+......+. +.+. ..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~-~g-~~~~~-~~~-~------------~~~i~~~~~~~~~~~~~~~~~~~~~ 66 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL-KR-DVYLT-EWN-S------------SDWIHDIIKEAKKKDLLTPLTFSLI 66 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT-TS-CEEEE-ETT-C------------CCHHHHHHHHHTTTSCCCHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh-cC-CEEEe-cCC-c------------HHHHHHHHhccccccCCCHHHHHHH
Confidence 4678999999999999999999987653 22 22111 111 0 011111111100 0000 00
Q ss_pred hhccccCCcHHHHHHHHHhCCceEEEecHHH--------------HHHHHcCCC-CeEEEEEcCCCHHHHHHHHH-cCCC
Q 019061 205 VHGNLYGTSVEAVEAVADAGKRCILDIDVQG--------------ARSVRASPL-DAIFIFICPPSMEELEERLR-ARGT 268 (346)
Q Consensus 205 ~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~--------------~~~l~~~~~-~~~~ill~~p~~~~l~eRL~-~R~~ 268 (346)
+....+....+.+...+..+..+++|..+.. +..+..... ...++++..| .+++.+|+. .|+.
T Consensus 67 ~~~~r~~~~~~~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~~R~~ 145 (213)
T 2plr_A 67 HATDFSDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVS-PDIALERIKKSKRK 145 (213)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECC-HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhccccc
Confidence 0000000011123334456788999975543 222322222 2345555544 788999998 7762
Q ss_pred -CC----------------HHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 269 -ET----------------EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 269 -~~----------------~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
+. .+.+.+|+..+..+.... .....|..+.+++++.+++.+++..+
T Consensus 146 ~~~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~~~---~~~~~Id~~~~~e~v~~~I~~~l~~~ 208 (213)
T 2plr_A 146 IKPQEAGADIFPGLSPEEGFLKYQGLITEVYDKLVKD---ENFIVIDGTKTPKEIQIQIRKFVGEL 208 (213)
T ss_dssp CCTTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHTTT---TTCEEEETTSCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhHHHHHHHHHHHHHHHHhh---CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 11 134556665544333221 12345556669999999988888765
No 86
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.78 E-value=3.7e-08 Score=84.43 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=42.4
Q ss_pred EEEEEcCCCHHHHHHHHHcCC------CCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHH
Q 019061 247 IFIFICPPSMEELEERLRARG------TETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 247 ~~ill~~p~~~~l~eRL~~R~------~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
.++++.. +.+++.+|+..|+ +++.+.+++|+..+..+ ...|...+....+..+.+++++.+++.+.+
T Consensus 108 ~vi~l~~-~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 108 GVVLVEV-PEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp EEEEEEC-CHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred EEEEEeC-CHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 3455544 4788888887663 35788888898877644 223322222334555568999888877654
No 87
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.78 E-value=9.7e-08 Score=81.16 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc--cccCCeeEEeeChhHHHHHHhccchhhhhhhhcc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--MEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~--~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~ 208 (346)
.+|++++|+|||||||||+++.|.+.+ |.....+...... ......++.++...... +...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~--- 68 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP----------WLQA--- 68 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHH----------HHHH---
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccchHHHHHhhcCcCCCcccccc----------HHHH---
Confidence 367899999999999999999998864 3222221110000 00000011111111000 0000
Q ss_pred ccCCcHHHHHHHHHhCCceEEEe---cHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Q 019061 209 LYGTSVEAVEAVADAGKRCILDI---DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET--EDQILKRLRNAKE 283 (346)
Q Consensus 209 ~yg~~~~~i~~~~~~~~~~iLD~---~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~--~e~i~~Rl~~~~~ 283 (346)
....+......+..+++|. .......++.......++++.. +.+++.+|+..|+... ...+...+.
T Consensus 69 ----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~-~~e~~~~R~~~R~~~~~~~~~~~~~~~---- 139 (175)
T 1knq_A 69 ----LNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKTQMLVTQFE---- 139 (175)
T ss_dssp ----HHHHHHHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEEC-CHHHHHHHHHTSTTCCCCHHHHHHHHH----
T ss_pred ----HHHHHHHHHhcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEEC-CHHHHHHHHHhccCCCCchHHHHHHHH----
Confidence 0112223334567788884 2333344444333445666665 4899999999886432 332322221
Q ss_pred HHHhccCCCCceEEEcCC-CHHHHHHHHHHHHH
Q 019061 284 EIKQGKSSGIFDHILYND-KLEECYENLKVICY 315 (346)
Q Consensus 284 ~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~ 315 (346)
.+....+....+.++.++ +++++.+++.+.+.
T Consensus 140 ~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 140 TLQEPGADETDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp HCCCCCTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred hhhCcccCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 111100122345555544 88888877766553
No 88
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.75 E-value=9.4e-08 Score=82.11 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=56.6
Q ss_pred hCCceEEEecHHHHH---HHH---cCCCCe-EEEEEcCCCHHHHHHHHHcC------CCCCHHHHHHHHHHHHHHHH---
Q 019061 223 AGKRCILDIDVQGAR---SVR---ASPLDA-IFIFICPPSMEELEERLRAR------GTETEDQILKRLRNAKEEIK--- 286 (346)
Q Consensus 223 ~~~~~iLD~~~~~~~---~l~---~~~~~~-~~ill~~p~~~~l~eRL~~R------~~~~~e~i~~Rl~~~~~~i~--- 286 (346)
.+..+++|+.+.... .+. .....+ .++++.. +.+++.+|+..| .+++.+.+++|+..+.....
T Consensus 85 ~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
T 1tev_A 85 QKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC-NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPII 163 (196)
T ss_dssp TCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEEC-CHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHH
Confidence 367888997543322 121 111222 4455554 478888888654 34467888888888766533
Q ss_pred -hccCCCCceEEEcCCCHHHHHHHHHHHHHH
Q 019061 287 -QGKSSGIFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 287 -~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
.|.....+..|..+.+++++.+++.+++..
T Consensus 164 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 164 DLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 333233344566777999999988887754
No 89
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.74 E-value=6.3e-09 Score=114.96 Aligned_cols=173 Identities=14% Similarity=0.174 Sum_probs=102.3
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCc----ccccccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
++.+.++.+.+|+.++|+|+||||||||++.|.+.++|..| .|..-..+ .....+...+|++|++.+|. +
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-----g 1167 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG-EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-----C 1167 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSS-EEEETTEETTTBCHHHHHTTEEEECSSCCCCS-----E
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCC-EEEECCEEhhhCCHHHHHhheEEECCCCEeeC-----c
Confidence 34445566789999999999999999999999999999888 55422211 11223456889999887664 3
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++..+...-...+.+.+.++++.... ...+... ++.++.++..+|..-+.+.+||
T Consensus 1168 TIreNI~~gld~~~~sd~ei~~Al~~a~l---------~~~I~~L-------------p~GldT~vge~G~~LSgGQrQr 1225 (1321)
T 4f4c_A 1168 SIAENIIYGLDPSSVTMAQVEEAARLANI---------HNFIAEL-------------PEGFETRVGDRGTQLSGGQKQR 1225 (1321)
T ss_dssp EHHHHHSSSSCTTTSCHHHHHHHHHHTTC---------HHHHHTS-------------TTTTCSEETTTSCSSCHHHHHH
T ss_pred cHHHHHhccCCCCCCCHHHHHHHHHHhCC---------hHHHHcC-------------cCCCCCEecCCCcccCHHHHHH
Confidence 66777654321112334555554443111 0011110 1234445566777778999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCC---CHHH-HHHHHHHHHHHhhcccCceeeEeecc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYND---KLEE-CYENLKVICYCLMQISDNLIIFLFVT 331 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~---~le~-~~~~l~~iI~~l~~~~~~~~~~~~~~ 331 (346)
+..+++.+... ..++-++ ++|. +.+.+.+.++++. .+++.+++.|
T Consensus 1226 iaiARAllr~~------~ILiLDEaTSaLD~~tE~~Iq~~l~~~~---~~~TvI~IAH 1274 (1321)
T 4f4c_A 1226 IAIARALVRNP------KILLLDEATSALDTESEKVVQEALDRAR---EGRTCIVIAH 1274 (1321)
T ss_dssp HHHHHHHHSCC------SEEEEESCCCSTTSHHHHHHHHHHTTTS---SSSEEEEECS
T ss_pred HHHHHHHHhCC------CEEEEeCccccCCHHHHHHHHHHHHHHc---CCCEEEEecc
Confidence 99999887642 2333222 3332 2344555555442 3445445555
No 90
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.74 E-value=5.3e-07 Score=77.17 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=55.0
Q ss_pred hCCceEEEecHHHH---HHHH---cCCCCeEEEEEcCCCHHHHHHHHHcCC------CCCHHHHHHHHHHHHHH----HH
Q 019061 223 AGKRCILDIDVQGA---RSVR---ASPLDAIFIFICPPSMEELEERLRARG------TETEDQILKRLRNAKEE----IK 286 (346)
Q Consensus 223 ~~~~~iLD~~~~~~---~~l~---~~~~~~~~ill~~p~~~~l~eRL~~R~------~~~~e~i~~Rl~~~~~~----i~ 286 (346)
.+..+++|+.+... ..+. .....+..+++...+.+++.+|+..|+ +++.+.+++|+..+..+ ..
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~ 161 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID 161 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 46788999754332 2221 221222234444445889999987764 24478888998876532 12
Q ss_pred hccCCCCceEEEcCCCHHHHHHHHHHHHHH
Q 019061 287 QGKSSGIFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 287 ~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
.|...+.+..|..+.+++++.+++.+++..
T Consensus 162 ~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 162 HYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 222222234455566999999988887764
No 91
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.74 E-value=1.5e-07 Score=83.29 Aligned_cols=163 Identities=21% Similarity=0.253 Sum_probs=86.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
++..++|+|++||||||+++.|...+. .....+....+.....+..+ .......+..+ ..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~----~~~i~~d~li~~~~~~~t~~----g~~i~~~~~~g----------~~~~ 65 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG----LAHLSTGDMLREAIKNGTKI----GLEAKSIIESG----------NFVG 65 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC----CEEEEHHHHHHHHHHTC--C----CHHHHHHHHHT----------CCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC----ceEEehhHHHHHHHHcCCHH----HHHHHHHHHCC----------CcCC
Confidence 457899999999999999999988653 12211111000000000000 01111111111 1111
Q ss_pred Cc--HHHHHHHHH---hCCceEEEecHHH---HHHHH----cCCCCe-EEEEEcCCCHHHHHHHHHcCC-----------
Q 019061 212 TS--VEAVEAVAD---AGKRCILDIDVQG---ARSVR----ASPLDA-IFIFICPPSMEELEERLRARG----------- 267 (346)
Q Consensus 212 ~~--~~~i~~~~~---~~~~~iLD~~~~~---~~~l~----~~~~~~-~~ill~~p~~~~l~eRL~~R~----------- 267 (346)
.. .+.+...+. .+..+++|+.+.. ...+. .....+ .++++..| .+++.+|+..|+
T Consensus 66 ~~~~~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~~~~~~g~~y~~ 144 (217)
T 3be4_A 66 DEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEID-DSEIIERISGRCTHPASGRIYHV 144 (217)
T ss_dssp HHHHHHHHHHHHHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEET
T ss_pred HHHHHHHHHHHHhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCccccCcccc
Confidence 00 111222222 3678899975543 22222 222222 44555554 788888987652
Q ss_pred ----------------------CCCHHHHHHHHHHHHHHH----HhccCCCCceEEEcCCCHHHHHHHHHHH
Q 019061 268 ----------------------TETEDQILKRLRNAKEEI----KQGKSSGIFDHILYNDKLEECYENLKVI 313 (346)
Q Consensus 268 ----------------------~~~~e~i~~Rl~~~~~~i----~~~~~~~~~~~Vi~n~~le~~~~~l~~i 313 (346)
+++.+.+++|+..+.++. ++|...+.+..|.++.+++++++++.++
T Consensus 145 ~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~ 216 (217)
T 3be4_A 145 KYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI 216 (217)
T ss_dssp TTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred ccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence 246788899999887652 2344344566777888999998877654
No 92
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.73 E-value=2.6e-08 Score=92.47 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeee-cCCcccccccCCeeEEeeChhHHHHHHhccchhhhh-hhhcc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-TTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA-SVHGN 208 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~-ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~-~~~~~ 208 (346)
..+..++|+|||||||||+++.|...++. ....++. +.|.... + +..+.. .+.++. .+.+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~~----~----------~~~~~~--~~~~~a~~~~~~ 93 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQHP----N----------FDELVK--LYEKDVVKHVTP 93 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTST----T----------HHHHHH--HHGGGCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhch----h----------hHHHHH--HccchhhhhhhH
Confidence 35789999999999999999999876531 1112221 2221111 0 111110 122221 22234
Q ss_pred ccCCc-HHHHHHHHHhCCceEEEecHHHHH---HH----HcCCCCe-EEEEEcCCCHHHH--HHHHH---------cCCC
Q 019061 209 LYGTS-VEAVEAVADAGKRCILDIDVQGAR---SV----RASPLDA-IFIFICPPSMEEL--EERLR---------ARGT 268 (346)
Q Consensus 209 ~yg~~-~~~i~~~~~~~~~~iLD~~~~~~~---~l----~~~~~~~-~~ill~~p~~~~l--~eRL~---------~R~~ 268 (346)
.|+.. ...+...+..+..+++|++..+.. ++ +...... .++|.++|+...+ .+|+. .|+.
T Consensus 94 ~~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~ 173 (287)
T 1gvn_B 94 YSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARAT 173 (287)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 45442 344566677899999997655432 22 2222222 3333344332222 77763 3433
Q ss_pred --CCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCH--------HHHHHHHHHHHHHh
Q 019061 269 --ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL--------EECYENLKVICYCL 317 (346)
Q Consensus 269 --~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~l--------e~~~~~l~~iI~~l 317 (346)
+..+.+.+|+..+..++.+. ..++.++.+++. +.+...+.++|...
T Consensus 174 ~~e~~~~i~~rl~~a~~el~~~---~~~d~v~v~d~~g~~ly~~~~~~~~~~~~ii~~e 229 (287)
T 1gvn_B 174 PKQAHDIVVKNLPTNLETLHKT---GLFSDIRLYNREGVKLYSSLETPSISPKETLEKE 229 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH---TCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcC---CCCCeEEEEeCCCCEeeccCCCCCcCHHHHHHHH
Confidence 24566778887777666542 345666666543 44434455555443
No 93
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.73 E-value=7.4e-08 Score=83.70 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
+|.+++|+|++||||||+++.|...+.......+.+.++....++. ...+|.....+..... .++.. ...+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~--i~~~~~~~~~~~~~~~--~~l~~----~~r~~ 74 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKM--IDDYLTRKKTYNDHIV--NLLFC----ANRWE 74 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHH--HHHHHTSSCCCCHHHH--HHHHH----HHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHH--HHHHHhcCCCCCHHHH--HHHHH----HHHHH
Confidence 5789999999999999999999987621111112222211111000 0000000000000000 00110 11111
Q ss_pred CcHHHHHHHHHhCCceEEEecHH--------------HHHHHHcCC-CCeEEEEEcCCCHHHHHHHHHcCCCCCH--HHH
Q 019061 212 TSVEAVEAVADAGKRCILDIDVQ--------------GARSVRASP-LDAIFIFICPPSMEELEERLRARGTETE--DQI 274 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~~~~--------------~~~~l~~~~-~~~~~ill~~p~~~~l~eRL~~R~~~~~--e~i 274 (346)
. .+.+......+..+++|..+. ....+.... ....++++..| .+++.+ .|+.+.. ..+
T Consensus 75 ~-~~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~---~R~~d~~e~~~~ 149 (204)
T 2v54_A 75 F-ASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESG-SKEINR---NVGEEIYEDVTF 149 (204)
T ss_dssp T-HHHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCC-HHHHTT---CCSSSTTCCSHH
T ss_pred H-HHHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCC-HHHHHh---hcCcccccHHHH
Confidence 1 233445556778888885433 122222221 12345555555 455544 4543322 267
Q ss_pred HHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 275 ~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
.+|+.....+..... ...+..|..+.+++++.+++.+++....
T Consensus 150 ~~rl~~~y~~~~~~~-~~~~~~Id~~~~~~~v~~~i~~~l~~~l 192 (204)
T 2v54_A 150 QQKVLQEYKKMIEEG-DIHWQIISSEFEEDVKKELIKNIVIEAI 192 (204)
T ss_dssp HHHHHHHHHHHHTTC-SSCEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 778766443433211 1223344455699999999988887654
No 94
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.73 E-value=3.8e-09 Score=107.77 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=96.3
Q ss_pred eccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCccc----ccccCCeeEEeeChhHHHHHHhccch
Q 019061 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKF 199 (346)
Q Consensus 124 ~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~g~~y~f~s~~~~~~~~~~~~~ 199 (346)
.+.++...+|++++|+||||||||||++.|.+.+++..| .+.....+.. .......+|++|+..+|. ++.
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~tv 445 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG-QILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-----TTV 445 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE-EEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-----SBH
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe-EEEECCEEhhhCCHHHHHhceEEEeCCCcccc-----ccH
Confidence 334456789999999999999999999999999999888 5543222211 111235789988875542 356
Q ss_pred hhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHH
Q 019061 200 LEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (346)
Q Consensus 200 ~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~ 279 (346)
.++..+.... ...+.+.++.+... ....-... .+.++..+..++..-+.+.+||+.
T Consensus 446 ~eni~~~~~~--~~~~~~~~~~~~~~----------~~~~~~~~------------~~g~~t~~~~~g~~LSgGq~Qrv~ 501 (598)
T 3qf4_B 446 KENLKYGNPG--ATDEEIKEAAKLTH----------SDHFIKHL------------PEGYETVLTDNGEDLSQGQRQLLA 501 (598)
T ss_dssp HHHHHSSSTT--CCTTHHHHHTTTTT----------CHHHHHTS------------TTGGGCBCHHHHTTSCHHHHHHHH
T ss_pred HHHHhcCCCC--CCHHHHHHHHHHhC----------CHHHHHhc------------cccccchhcCCCCCCCHHHHHHHH
Confidence 6665543211 11222322221100 00000000 011222233334456799999999
Q ss_pred HHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccc
Q 019061 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDL 335 (346)
Q Consensus 280 ~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~ 335 (346)
.+++.+...+ .-++|+....-|.+. .+.+.+.+..+. .+.+.+.+.|..+.
T Consensus 502 iAral~~~p~-illlDEpts~LD~~~-~~~i~~~l~~~~---~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 502 ITRAFLANPK-ILILDEATSNVDTKT-EKSIQAAMWKLM---EGKTSIIIAHRLNT 552 (598)
T ss_dssp HHHHHHTCCS-EEEECCCCTTCCHHH-HHHHHHHHHHHH---TTSEEEEESCCTTH
T ss_pred HHHHHhcCCC-EEEEECCccCCCHHH-HHHHHHHHHHHc---CCCEEEEEecCHHH
Confidence 9998875421 111222222225433 345666666663 24455577776653
No 95
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.73 E-value=6.6e-09 Score=92.19 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHH----hccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 266 RGTETEDQILKRLRNAKEEIK----QGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 266 R~~~~~e~i~~Rl~~~~~~i~----~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
|+++..+.+++|+..+..+.. .|. .....|..+.+++++++++.+++..+.
T Consensus 158 r~~d~~~~i~~Rl~~~~~~~~~l~~~y~--~~~~~Id~~~~~~ev~~~I~~~l~~~l 212 (222)
T 1zak_A 158 RFDDTEEKVKLRLETYYQNIESLLSTYE--NIIVKVQGDATVDAVFAKIDELLGSIL 212 (222)
T ss_dssp CTTCCTTHHHHHHHHHHHHHHHHHHTTC--CCEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH--hcEEEEECCCCHHHHHHHHHHHHHhhc
Confidence 345567889999988876432 332 234456676799999999998887653
No 96
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.72 E-value=4.7e-07 Score=80.88 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=58.4
Q ss_pred CCceEEEecHHHH---HHH----HcCCC-CeEEEEEcCCCHHHHHHHHHcC-----------------------------
Q 019061 224 GKRCILDIDVQGA---RSV----RASPL-DAIFIFICPPSMEELEERLRAR----------------------------- 266 (346)
Q Consensus 224 ~~~~iLD~~~~~~---~~l----~~~~~-~~~~ill~~p~~~~l~eRL~~R----------------------------- 266 (346)
+..+++|+.+... ..+ ..... ...+|++..+ .+++.+|+..|
T Consensus 94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 172 (233)
T 1ak2_A 94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP-DSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEP 172 (233)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCB
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCcCCccCCccccccCCCcccccccccccc
Confidence 3568889755332 222 11111 2344555544 78888898765
Q ss_pred ----CCCCHHHHHHHHHHHHHH----HHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 267 ----GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 267 ----~~~~~e~i~~Rl~~~~~~----i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
.+++.+.+++|+..|.++ +++|...+.+..|.++.+++++++++.+.+..+
T Consensus 173 l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 173 LIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 235678899999887654 334432344567778889999999988887654
No 97
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.72 E-value=6.2e-07 Score=79.65 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCceEEEecHHHHH---HHHcCCCCeEEEEEcCCCHHHHHHHHHcC---------------------------------C
Q 019061 224 GKRCILDIDVQGAR---SVRASPLDAIFIFICPPSMEELEERLRAR---------------------------------G 267 (346)
Q Consensus 224 ~~~~iLD~~~~~~~---~l~~~~~~~~~ill~~p~~~~l~eRL~~R---------------------------------~ 267 (346)
+..+++|..+.... .+........++++..+ .+.+.+|+..| .
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~-~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~ 162 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVP-FEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRE 162 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECC-HHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred CCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECC-HHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCC
Confidence 56788887544332 23332223345555554 77888887654 2
Q ss_pred CCCHHHHHHHHHHHHHHH----HhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 268 TETEDQILKRLRNAKEEI----KQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 268 ~~~~e~i~~Rl~~~~~~i----~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
+++.+.+++|+..|..+. .+|...+.+..|.++ +++++++++.+++...
T Consensus 163 ~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 163 DDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTK 215 (227)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhh
Confidence 346788999998887653 243323345566666 9999999988887654
No 98
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.71 E-value=4e-07 Score=79.20 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=53.1
Q ss_pred hCCceEEEecHHHHH---H----HHcCCCC-eEEEEEcCCCHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHH----Hhc
Q 019061 223 AGKRCILDIDVQGAR---S----VRASPLD-AIFIFICPPSMEELEERLRARG--TETEDQILKRLRNAKEEI----KQG 288 (346)
Q Consensus 223 ~~~~~iLD~~~~~~~---~----l~~~~~~-~~~ill~~p~~~~l~eRL~~R~--~~~~e~i~~Rl~~~~~~i----~~~ 288 (346)
.+..+++|+.+.... . +...... ..++++..| .+++.+|+..|+ +++.+.+++|+..+..+. ..|
T Consensus 97 ~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~~ 175 (201)
T 2cdn_A 97 AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVS-EEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYY 175 (201)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHT
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHHh
Confidence 356789997543321 1 2222222 244555544 788999998764 357888989998776542 232
Q ss_pred cCCCCceEEEcCCCHHHHHHHHHHHH
Q 019061 289 KSSGIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 289 ~~~~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
......|..+.+++++.+++.+++
T Consensus 176 --~~~~~~Id~~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 176 --RDQLKTVDAVGTMDEVFARALRAL 199 (201)
T ss_dssp --TTTEEEEECCSCHHHHHHHHHHHT
T ss_pred --cCcEEEEeCCCCHHHHHHHHHHHH
Confidence 222334445568999888777654
No 99
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.71 E-value=1.2e-09 Score=98.72 Aligned_cols=92 Identities=15% Similarity=0.252 Sum_probs=59.2
Q ss_pred CceEEEecHHHHH-HHHcCC---CC-eEEEE-EcCCCHHHHH----HHHHcCCCCCHHHHHHHHHHHHHH----HHhccC
Q 019061 225 KRCILDIDVQGAR-SVRASP---LD-AIFIF-ICPPSMEELE----ERLRARGTETEDQILKRLRNAKEE----IKQGKS 290 (346)
Q Consensus 225 ~~~iLD~~~~~~~-~l~~~~---~~-~~~il-l~~p~~~~l~----eRL~~R~~~~~e~i~~Rl~~~~~~----i~~~~~ 290 (346)
..+.+|.+++... .+.... .. .+..+ +.+|+...++ ||+.+++.++.+.+.+++..+.++ +.+|..
T Consensus 130 ~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~ 209 (246)
T 2bbw_A 130 LVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKS 209 (246)
T ss_dssp EEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 3556676666532 222211 01 12333 6677777778 888888888889999999887655 234443
Q ss_pred CCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 291 SGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 291 ~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
.+.+..+.++.+ +++++++.+++.+.
T Consensus 210 ~~~~~~id~~~~-~~v~~~i~~~l~~~ 235 (246)
T 2bbw_A 210 RGVLHQFSGTET-NKIWPYVYTLFSNK 235 (246)
T ss_dssp TTCEEEEECSCH-HHHHHHHHHHHHTT
T ss_pred cCcEEEECCCCc-HHHHHHHHHHHHhh
Confidence 445666777766 89999888887654
No 100
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.69 E-value=6.5e-08 Score=83.51 Aligned_cols=169 Identities=16% Similarity=0.138 Sum_probs=78.8
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhh---hhccccC
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS---VHGNLYG 211 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~---~~~~~yg 211 (346)
+++|.|++||||||+++.|...+.. .|..+.. ++.+..... ...+...+..+.+..... +....+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~v~~-~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 70 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKVIL-KREPGGTET---------GEKIRKILLEEEVTPKAELFLFLASRNL 70 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-CCC-EEE-EESSCSSHH---------HHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEE-eeCCCCCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999887532 2433322 222111000 112222221222111110 1111111
Q ss_pred CcHHHHHHHHHhCCceEEEe---------------cHHHHHHH---HcCCC-CeEEEEEcCCCHHHHHHHHHcCCCCCHH
Q 019061 212 TSVEAVEAVADAGKRCILDI---------------DVQGARSV---RASPL-DAIFIFICPPSMEELEERLRARGTETED 272 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l---~~~~~-~~~~ill~~p~~~~l~eRL~~R~~~~~e 272 (346)
.... +...+..+..+++|- +......+ ..... ...++++.. +.+++.+|+..|+.....
T Consensus 71 ~~~~-i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl~~R~~~~~~ 148 (197)
T 2z0h_A 71 LVTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDV-DVETALKRKGELNRFEKR 148 (197)
T ss_dssp HHHH-HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHC---CCCCCH
T ss_pred HHHH-HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeC-CHHHHHHHHhccCcccHH
Confidence 1111 222334566777772 22222222 11112 233444444 478999999988654434
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 273 ~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
.+.+|+.....++.... ...+..|..+.+++++.+++.+++..+
T Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~Id~~~~~e~~~~~i~~~l~~~ 192 (197)
T 2z0h_A 149 EFLERVREGYLVLAREH-PERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 66666655433433221 223445666779999988887776543
No 101
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.69 E-value=2.8e-07 Score=81.45 Aligned_cols=92 Identities=16% Similarity=0.106 Sum_probs=56.1
Q ss_pred hCCceEEEecHHHHH---HH----HcCCCCe-EEEEEcCCCHHHHHHHHHcC----------------------------
Q 019061 223 AGKRCILDIDVQGAR---SV----RASPLDA-IFIFICPPSMEELEERLRAR---------------------------- 266 (346)
Q Consensus 223 ~~~~~iLD~~~~~~~---~l----~~~~~~~-~~ill~~p~~~~l~eRL~~R---------------------------- 266 (346)
.+..+++|+.+.... .+ ......+ .++++..| .+++.+|+..|
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~ 160 (220)
T 1aky_A 82 CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD-DELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGE 160 (220)
T ss_dssp GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhCCCccCccCCccccccCCCccccccccccc
Confidence 456788997543322 22 1112222 45555544 68888888654
Q ss_pred -----CCCCHHHHHHHHHHHHHHHH----hccCCCCceEEEcCCCHHHHHHHHHHHHH
Q 019061 267 -----GTETEDQILKRLRNAKEEIK----QGKSSGIFDHILYNDKLEECYENLKVICY 315 (346)
Q Consensus 267 -----~~~~~e~i~~Rl~~~~~~i~----~~~~~~~~~~Vi~n~~le~~~~~l~~iI~ 315 (346)
.+++.+.+++|+..+.++.. +|...+.+..|.++.+++++++++.+.+.
T Consensus 161 ~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 161 ALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp BCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 23567788999988876522 34323445566677899999888877653
No 102
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.64 E-value=7.7e-08 Score=84.23 Aligned_cols=175 Identities=11% Similarity=0.148 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhcc-chhhh---hhhh
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDG-KFLEF---ASVH 206 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~-~~~e~---~~~~ 206 (346)
.+|.+++|+|++||||||+++.|...+.. .+..+..+ +.+..... . ...+......+ .+... ..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v~~~-~~~~~~~~--~------~~~i~~~~~~~~~~~~~~~~~~~~ 76 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA-AGHRAELL-RFPERSTE--I------GKLLSSYLQKKSDVEDHSVHLLFS 76 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEE-ESSCTTSH--H------HHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEe-eCCCCCCc--H------HHHHHHHHhcCCCCCHHHHHHHHH
Confidence 35789999999999999999999886532 22232211 11100000 0 00011111000 11100 0000
Q ss_pred ccccCCcHHHHHHHHHhCCceEEEec---------------HHHHHHHHcCCC-CeEEEEEcCCCHHHHHHHHHcCCC-C
Q 019061 207 GNLYGTSVEAVEAVADAGKRCILDID---------------VQGARSVRASPL-DAIFIFICPPSMEELEERLRARGT-E 269 (346)
Q Consensus 207 ~~~yg~~~~~i~~~~~~~~~~iLD~~---------------~~~~~~l~~~~~-~~~~ill~~p~~~~l~eRL~~R~~-~ 269 (346)
...+.. .+.+...+..+..+++|.. .+....+..... ...++++..| .+++.+|+..+.+ .
T Consensus 77 ~~r~~~-~~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~Rl~r~~~~~ 154 (215)
T 1nn5_A 77 ANRWEQ-VPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHERY 154 (215)
T ss_dssp HHHHTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----CTT
T ss_pred HHHHHH-HHHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCcccc
Confidence 001111 1234445567788888832 122222222111 2345555554 7888899864422 1
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 270 ~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
....+.+++.....+..... ...+..|..+.+++++.+++.+++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~Id~~~~~e~~~~~i~~~l~~~l 202 (215)
T 1nn5_A 155 ENGAFQERALRCFHQLMKDT-TLNWKMVDASKSIEAVHEDIRVLSEDAI 202 (215)
T ss_dssp CSHHHHHHHHHHHHHHTTCT-TSCEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhC-CCCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 22345566654333322211 1223445556699999999988887654
No 103
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.63 E-value=4.8e-08 Score=107.70 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=100.8
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc----cccccCCeeEEeeChhHHHHHHhccchhhhh
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~ 203 (346)
+.+.+|++++|+||||||||||++.|.+.+++..| .|..-..+. ........+|++|+..+| .++..++.
T Consensus 1054 l~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-----~~ti~eNi 1127 (1284)
T 3g5u_A 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG-SVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-----DCSIAENI 1127 (1284)
T ss_dssp EEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE-EEESSSSCTTSSCHHHHTTSCEEEESSCCCC-----SSBHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEEcccCCHHHHHhceEEECCCCccc-----cccHHHHH
Confidence 44669999999999999999999999999999888 554322211 111235689999987544 23666766
Q ss_pred hhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 019061 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (346)
Q Consensus 204 ~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~ 283 (346)
.+.........+.+.+..+.. ++...-... .+.++.++..++...+.+.+||+..+++
T Consensus 1128 ~~~~~~~~~~~~~i~~~~~~~----------~~~~~i~~l------------~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1128 AYGDNSRVVSYEEIVRAAKEA----------NIHQFIDSL------------PDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp TCCCSSCCCCHHHHHHHHHHH----------TCHHHHSST------------TTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred hccCCCCCCCHHHHHHHHHHh----------CcHHHHHhC------------ccccccccCCCCCccCHHHHHHHHHHHH
Confidence 554322222334443333221 011110100 1233344455666678999999999998
Q ss_pred HHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhhcccCceeeEeecccccc
Q 019061 284 EIKQGKSSGIFDHILYNDKLEECYENLKVICYCLMQISDNLIIFLFVTYPDL 335 (346)
Q Consensus 284 ~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~~ 335 (346)
.+.... .-++|+.-..-|.+ +.+.+.+.+..+. .+.+.+.+.|..+.
T Consensus 1186 l~~~p~-iLiLDEpTs~lD~~-~~~~i~~~l~~~~---~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1186 LVRQPH-ILLLDEATSALDTE-SEKVVQEALDKAR---EGRTCIVIAHRLST 1232 (1284)
T ss_dssp HHHCCS-SEEEESCSSSCCHH-HHHHHHHHHHHHS---SSSCEEEECSCTTG
T ss_pred HHcCCC-EEEEeCCcccCCHH-HHHHHHHHHHHhC---CCCEEEEEecCHHH
Confidence 876521 11122222233554 3456666776543 24444467776553
No 104
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.59 E-value=5.4e-10 Score=114.06 Aligned_cols=50 Identities=26% Similarity=0.256 Sum_probs=39.7
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChh
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERS 188 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~ 188 (346)
...+|++++|+||||||||||+++|.+..++..| .+.. ...++|+||...
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~---------~~~i~~v~Q~~~ 427 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-KVEW---------DLTVAYKPQYIK 427 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBS-CCCC---------CCCEEEECSSCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEE---------eeEEEEEecCcc
Confidence 3458999999999999999999999999988888 3322 124778887653
No 105
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.59 E-value=8.7e-07 Score=74.50 Aligned_cols=67 Identities=10% Similarity=0.166 Sum_probs=38.9
Q ss_pred EEEEEcCCCHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC--CHHHHHHHHHHHHHHh
Q 019061 247 IFIFICPPSMEELEERLRARGT--ETEDQILKRLRNAKEEIKQGKSSGIFDHILYND--KLEECYENLKVICYCL 317 (346)
Q Consensus 247 ~~ill~~p~~~~l~eRL~~R~~--~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~--~le~~~~~l~~iI~~l 317 (346)
.++++. ++.+++.+|+..|+. ... ...+++.....+..... . ..+.++.++ +++++.+++.+.+.+.
T Consensus 97 ~~i~l~-~~~e~~~~R~~~r~r~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~~id~~~~~~~ev~~~I~~~~~~~ 167 (173)
T 3kb2_A 97 KVVYLH-ADPSVIKKRLRVRGDEYIEG-KDIDSILELYREVMSNA-G-LHTYSWDTGQWSSDEIAKDIIFLVELE 167 (173)
T ss_dssp EEEEEE-CCHHHHHHHHHHHSCSCCCH-HHHHHHHHHHHHHHHTC-S-SCEEEEETTTSCHHHHHHHHHHHHHHG
T ss_pred EEEEEe-CCHHHHHHHHHhcCCcchhh-hHHHHHHHHHHHHHhhc-C-CCEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 445555 458999999987543 333 34444444433433221 1 234445443 8999999888887765
No 106
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.59 E-value=2.4e-07 Score=83.57 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=25.5
Q ss_pred CCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 118 g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
|...++.+.++...+|.+++|+|||||||||++++|.+.+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455556677789999999999999999999999865
No 107
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.59 E-value=7.4e-07 Score=79.05 Aligned_cols=173 Identities=18% Similarity=0.209 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccc-eeeecCCcccccccCCeeEEeeChhHHHHHHhc------cch---hh
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGF-SVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKD------GKF---LE 201 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~-~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~------~~~---~e 201 (346)
+|.+++|.|++||||||+++.|...+.. .|. .+ .+||.+..... .+.+...+.. ..+ .+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v-~~~rep~~t~~---------g~~ir~~l~~~~~~~~~~~~~~~e 70 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDM-VFTREPGGTQL---------AEKLRSLLLDIKSVGDEVITDKAE 70 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCE-EEEESSCSSHH---------HHHHHHHHHSTTTTTTCCCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcc-eeeeCCCCCHH---------HHHHHHHHhcccccccccCChHHH
Confidence 5889999999999999999999887643 332 22 33443321100 1122222210 001 01
Q ss_pred hhhhhccccCCcHHHHHHHHHhCCceEEEe---------------cHHHHHHHHc---CCCCe-EEEEEcCCCHHHHHHH
Q 019061 202 FASVHGNLYGTSVEAVEAVADAGKRCILDI---------------DVQGARSVRA---SPLDA-IFIFICPPSMEELEER 262 (346)
Q Consensus 202 ~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l~~---~~~~~-~~ill~~p~~~~l~eR 262 (346)
..-+...-+......+...++.|..++.|= +.+.+..+.. ..+.+ .++|+..| .+++.+|
T Consensus 71 ~lL~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~-~e~~~~R 149 (213)
T 4tmk_A 71 VLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVT-PEVGLKR 149 (213)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCC-HHHHHHH
Confidence 111111111111223555667889999982 2233333321 22233 44555444 7888889
Q ss_pred HHcCCC--CC---HHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 263 LRARGT--ET---EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 263 L~~R~~--~~---~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
+..|+. .. .....+|+......+.... ..+..|.++.+++++.+++.+.+..+.
T Consensus 150 i~~R~~~dr~E~~~~~f~~rv~~~y~~la~~~--~~~~vIDa~~s~eeV~~~I~~~l~~~l 208 (213)
T 4tmk_A 150 ARARGELDRIEQESFDFFNRTRARYLELAAQD--KSIHTIDATQPLEAVMDAIRTTVTHWV 208 (213)
T ss_dssp HHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTC--TTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccchhhhHHHHHHHHHHHHHHHHHHC--CcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 887752 11 2345566665544443221 346778888899999999998887653
No 108
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.58 E-value=4.4e-07 Score=79.90 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHHH----HhccCC-----CCceEEEcCCCHHHHHHHHHHHH
Q 019061 266 RGTETEDQILKRLRNAKEEI----KQGKSS-----GIFDHILYNDKLEECYENLKVIC 314 (346)
Q Consensus 266 R~~~~~e~i~~Rl~~~~~~i----~~~~~~-----~~~~~Vi~n~~le~~~~~l~~iI 314 (346)
|.+++.+.+++|++.|..+. .+|... ..+..|.++.+++++++++.+.+
T Consensus 156 r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 156 RKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp CTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 44567889999999887652 233211 34567778889999998887654
No 109
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.57 E-value=4.9e-08 Score=98.30 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=32.7
Q ss_pred CccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
++...+|++++|+||||||||||+++|++..++..|
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 345668999999999999999999999999999888
No 110
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.54 E-value=5.2e-08 Score=98.15 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=40.1
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChh
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERS 188 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~ 188 (346)
+...+|++++|+||||||||||+++|.+..++..| .+.. ...++|+++...
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~i~~---------~~~i~~v~Q~~~ 357 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-KIEW---------DLTVAYKPQYIK 357 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBC-CCCC---------CCCEEEECSSCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEE---------CceEEEEecCCc
Confidence 33468999999999999999999999999988888 4332 124778877643
No 111
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.54 E-value=3.7e-07 Score=83.02 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
|+.++|+|++||||||+++.|.+.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999998653
No 112
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.53 E-value=3.9e-07 Score=78.00 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++.++|+|++||||||+++.|...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998765
No 113
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.52 E-value=5.4e-07 Score=76.38 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=42.3
Q ss_pred HHHHHH---HhCCceEEEecHHH---HHHHH---c-CCCCeEEEEEcCCCHHHHHHHHHcCC--CCCHHHHHHHHHHHHH
Q 019061 216 AVEAVA---DAGKRCILDIDVQG---ARSVR---A-SPLDAIFIFICPPSMEELEERLRARG--TETEDQILKRLRNAKE 283 (346)
Q Consensus 216 ~i~~~~---~~~~~~iLD~~~~~---~~~l~---~-~~~~~~~ill~~p~~~~l~eRL~~R~--~~~~e~i~~Rl~~~~~ 283 (346)
.+...+ ..+..+++|..+.. ...+. . .......+++. ++.+++.+|+..|+ ..+.+.++++++.+..
T Consensus 67 ~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~-~~~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~ 145 (181)
T 1ly1_A 67 TAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFD-VPWTELVKRNSKRGTKAVPIDVLRSMYKSMRE 145 (181)
T ss_dssp HHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECC-CCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEe-CCHHHHHHHHhccccCCCCHHHHHHHHHHhhc
Confidence 344555 56788999864322 22222 1 11222445544 56899999999886 4567888888888765
Q ss_pred H
Q 019061 284 E 284 (346)
Q Consensus 284 ~ 284 (346)
.
T Consensus 146 ~ 146 (181)
T 1ly1_A 146 Y 146 (181)
T ss_dssp H
T ss_pred c
Confidence 5
No 114
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.51 E-value=7.6e-08 Score=106.08 Aligned_cols=173 Identities=12% Similarity=0.137 Sum_probs=98.9
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc----cccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
+..+.++.+.+|++++|+||||||||||++.|.+.+++..| .|.....+.+. .....++|++|...+|. +
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-----~ 478 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG-MVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-----T 478 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE-EEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-----S
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEHHhCCHHHHHhheEEEcCCCccCC-----c
Confidence 44455667789999999999999999999999999999888 54432211111 11234789999876543 3
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
++.++..+.... ...+.+.++.+.... ...+... ...++..+..++...+.+.+||
T Consensus 479 ti~eNi~~g~~~--~~~~~~~~~~~~~~~---------~~~i~~l-------------~~g~~t~~~~~g~~LSgGq~Qr 534 (1284)
T 3g5u_A 479 TIAENIRYGRED--VTMDEIEKAVKEANA---------YDFIMKL-------------PHQFDTLVGERGAQLSGGQKQR 534 (1284)
T ss_dssp CHHHHHHHHCSS--CCHHHHHHHHHHTTC---------HHHHHHS-------------TTGGGCCCSSSSCSSCHHHHHH
T ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHhCc---------HHHHHhc-------------cccccccccCCCCccCHHHHHH
Confidence 666666554321 223334333322110 0000000 0112223344566678999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeeccccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTYPD 334 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~~~ 334 (346)
+..+++.+... +.++-++ |.+ +.+.+.+.+..+. .+++.+.+.|..+
T Consensus 535 iaiARal~~~p------~iliLDEpts~LD~~-~~~~i~~~l~~~~---~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 535 IAIARALVRNP------KILLLDEATSALDTE-SEAVVQAALDKAR---EGRTTIVIAHRLS 586 (1284)
T ss_dssp HHHHHHHHHCC------SEEEEESTTCSSCHH-HHHHHHHHHHHHH---TTSEEEEECSCHH
T ss_pred HHHHHHHhcCC------CEEEEECCCCCCCHH-HHHHHHHHHHHHc---CCCEEEEEecCHH
Confidence 99999887652 2333322 543 3345566665543 2445546666443
No 115
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.51 E-value=2.4e-07 Score=84.83 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=48.4
Q ss_pred CCCeeEEEeCCCh---HHHHH---HHHHcCCeEEEeccC-cc-------CCCC--CeEEEEcCCCCChHHHHHhhccccC
Q 019061 95 SSDDCLWFLEVDT---PYVRE---QKKVVGAEVVAWSKG-VI-------GNVE--KPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 95 ~~~~~i~~~k~D~---~~~~~---~~~~~g~~v~~~~~~-~~-------~~~g--~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+.++++++||+|. +..+. ..+..|+++ ..|+. .. .... ..++++|.||+|||||+|.|.+...
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc
Confidence 7889999999994 22222 224568888 77765 11 1234 4899999999999999999998765
Q ss_pred CCccceeeecCCccc
Q 019061 159 SMFGFSVSHTTRAPR 173 (346)
Q Consensus 159 ~~~g~~i~~ttr~~~ 173 (346)
...+ .++++|+...
T Consensus 125 ~~~~-~~~g~T~~~~ 138 (262)
T 3cnl_A 125 SSVG-AQPGITKGIQ 138 (262)
T ss_dssp -----------CCSC
T ss_pred cccC-CCCCCccceE
Confidence 4455 5566776544
No 116
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.49 E-value=3.2e-07 Score=78.63 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCChHHHHHhhccccC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++++|+|++||||||+++.|...+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999988764
No 117
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.49 E-value=2e-06 Score=73.69 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=40.9
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
..++++..| .+++.+|+.+|+....+.+.+|+.....+..... .....|..+.+++++.+++.+++..+
T Consensus 124 d~vi~l~~~-~e~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~~~~~~~~~i~~~l~~~ 192 (195)
T 2pbr_A 124 DITLLLDIP-VDIALRRLKEKNRFENKEFLEKVRKGFLELAKEE--ENVVVIDASGEEEEVFKEILRALSGV 192 (195)
T ss_dssp SEEEEEECC-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHS--TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCC-HHHHHHHhhccCccchHHHHHHHHHHHHHHHhhC--CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 345555554 7889999987764434556677654333322111 22234445558999999888877643
No 118
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.49 E-value=8.4e-07 Score=75.30 Aligned_cols=27 Identities=22% Similarity=0.520 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+++++|+|+|||||||+++.|...++
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 119
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.49 E-value=7.6e-08 Score=106.36 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=98.8
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc----cccCCeeEEeeChhHHHHHHhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDG 197 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~g~~y~f~s~~~~~~~~~~~ 197 (346)
++.+.++.+.+|+.++|+||||||||||++.|.+.+++..| .|..-..+.+. ..+..++|++|++-+|. +
T Consensus 433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G-~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-----~ 506 (1321)
T 4f4c_A 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG-KITIDGVDVRDINLEFLRKNVAVVSQEPALFN-----C 506 (1321)
T ss_dssp SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE-EEEETTEETTTSCHHHHHHHEEEECSSCCCCS-----E
T ss_pred eeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccC-cccCCCccchhccHHHHhhcccccCCcceeeC-----C
Confidence 34445566789999999999999999999999999999888 55432222111 11235789988876553 3
Q ss_pred chhhhhhhhccccCCcHHHHHHHHHhCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHH
Q 019061 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (346)
Q Consensus 198 ~~~e~~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~R 277 (346)
+..++..+.... .+.+.+.++++.... ...+... ++..+..+..+|...+.+.+||
T Consensus 507 TI~eNI~~g~~~--~~~~~v~~a~~~a~l---------~~~i~~l-------------p~G~~T~vGe~G~~LSGGQkQR 562 (1321)
T 4f4c_A 507 TIEENISLGKEG--ITREEMVAACKMANA---------EKFIKTL-------------PNGYNTLVGDRGTQLSGGQKQR 562 (1321)
T ss_dssp EHHHHHHTTCTT--CCHHHHHHHHHHTTC---------HHHHHHS-------------TTTTSSEESSSSCCCCHHHHHH
T ss_pred chhHHHhhhccc--chHHHHHHHHHHccc---------hhHHHcC-------------CCCCccEecCCCCCCCHHHHHH
Confidence 666776554221 233444444332110 0000000 0122234456677778999999
Q ss_pred HHHHHHHHHhccCCCCceEEEcCC-----CHHHHHHHHHHHHHHhhcccCceeeEeeccc
Q 019061 278 LRNAKEEIKQGKSSGIFDHILYND-----KLEECYENLKVICYCLMQISDNLIIFLFVTY 332 (346)
Q Consensus 278 l~~~~~~i~~~~~~~~~~~Vi~n~-----~le~~~~~l~~iI~~l~~~~~~~~~~~~~~~ 332 (346)
+..+++.+... +.++-++ |.+ +...+.+.+..+.+ +++.+.+.|.
T Consensus 563 iaiARAl~~~~------~IliLDE~tSaLD~~-te~~i~~~l~~~~~---~~T~iiiaHr 612 (1321)
T 4f4c_A 563 IAIARALVRNP------KILLLDEATSALDAE-SEGIVQQALDKAAK---GRTTIIIAHR 612 (1321)
T ss_dssp HHHHHHHTTCC------SEEEEESTTTTSCTT-THHHHHHHHHHHHT---TSEEEEECSC
T ss_pred HHHHHHHccCC------CEEEEecccccCCHH-HHHHHHHHHHHHhC---CCEEEEEccc
Confidence 99999876542 2333222 332 23456666666542 4444455553
No 120
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.3e-07 Score=96.43 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~ 163 (346)
..+|++++|+||||||||||+++|.+..++..|.
T Consensus 375 ~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 375 FSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp CCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred cccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 3466899999999999999999999999988883
No 121
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.49 E-value=1.5e-06 Score=74.28 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++.+++|.|++||||||+++.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999988653
No 122
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.46 E-value=1.7e-06 Score=76.18 Aligned_cols=171 Identities=19% Similarity=0.248 Sum_probs=89.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhh----hhhhhcc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE----FASVHGN 208 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e----~~~~~~~ 208 (346)
|+.++|-|+-||||||+++.|...+.. |..+.. |+.+.... ..+.+......+.-.. ..-|...
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~--~~~v~~-~~eP~~t~---------~g~~ir~~l~~~~~~~~~~~~lLf~a~ 69 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIM-TREPGGVP---------TGEEIRKIVLEGNDMDIRTEAMLFAAS 69 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEE-EESSTTCH---------HHHHHHHHHHSSCCCCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC--CCCEEE-eeCCCCCh---------HHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 678999999999999999999987742 433332 22221100 0112222222211000 0001110
Q ss_pred ccCCcHHHHHHHHHhCCceEEEe---------------cHHHHHHHHc---CCCC-eEEEEEcCCCHHHHHHHHHcCCCC
Q 019061 209 LYGTSVEAVEAVADAGKRCILDI---------------DVQGARSVRA---SPLD-AIFIFICPPSMEELEERLRARGTE 269 (346)
Q Consensus 209 ~yg~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l~~---~~~~-~~~ill~~p~~~~l~eRL~~R~~~ 269 (346)
-+......+...+..|..++.|= +.+.+..+.. ..+. ..++|+..| .++..+|+..|+..
T Consensus 70 R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~Ri~~r~~~ 148 (205)
T 4hlc_A 70 RREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSRD 148 (205)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCC-HHHHHHHHHhcCCc
Confidence 00011223445567888888882 2222223221 2222 345555554 68888999877532
Q ss_pred C------HHHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 270 T------EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 270 ~------~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
. .....+|+.....++... .+..+..|+++.+++++.+++.+.|.+.
T Consensus 149 ~dr~e~~~~~f~~~v~~~Y~~l~~~-~~~~~~~IDa~~~~e~V~~~i~~~i~~~ 201 (205)
T 4hlc_A 149 QNRLDQEDLKFHEKVIEGYQEIIHN-ESQRFKSVNADQPLENVVEDTYQTIIKY 201 (205)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHS-CCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred ccchhccCHHHHHHHHHHHHHHHHh-CCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 1 224556665554444332 2344678888889999999888877654
No 123
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.46 E-value=1.6e-07 Score=83.87 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=83.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhcc-chh---hhhhh
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDG-KFL---EFASV 205 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~-~~~---e~~~~ 205 (346)
..+|..++|.|++||||||+++.|...+....|..+..+||.+..... .+.+...+... .+- +..-|
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~---------g~~ir~~l~~~~~~~~~~e~llf 88 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLL---------NESVRNLLFKAQGLDSLSELLFF 88 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHH---------HHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChH---------HHHHHHHHhCCCCCCHHHHHHHH
Confidence 347899999999999999999999887653134344443444321110 11222222110 100 00011
Q ss_pred hccccCCcHHHHHHHHHhCCceEEEe---------------cHHHHHHHHc--CCCC-eEEEEEcCCCHHHHHHHHHcCC
Q 019061 206 HGNLYGTSVEAVEAVADAGKRCILDI---------------DVQGARSVRA--SPLD-AIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 206 ~~~~yg~~~~~i~~~~~~~~~~iLD~---------------~~~~~~~l~~--~~~~-~~~ill~~p~~~~l~eRL~~R~ 267 (346)
...-+....+.+...+..|..++.|= +.+.+..+.. ..+. ..++++..+ .++..+|+ .++
T Consensus 89 ~a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~-~e~~~~Ri-~rd 166 (223)
T 3ld9_A 89 IAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVD-INESLSRS-CKN 166 (223)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-------------
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCC-HHHHHHHh-ccC
Confidence 11111111222445567788888882 2222333311 1022 344555544 57777787 554
Q ss_pred CCCH--HHHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHHhh
Q 019061 268 TETE--DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 268 ~~~~--e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~l~ 318 (346)
.... ....+|+.....++.... +..+..|+++.+++++ +++.+++..+.
T Consensus 167 r~E~~~~e~~~rv~~~y~~la~~~-~~~~~vIDa~~sieeV-~~I~~~l~~~l 217 (223)
T 3ld9_A 167 GYEFADMEFYYRVRDGFYDIAKKN-PHRCHVITDKSETYDI-DDINFVHLEVI 217 (223)
T ss_dssp -----CHHHHHHHHHHHHHHHHHC-TTTEEEEESSCSSSCC-CHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHC-CCCEEEEcCCCCHHHH-HHHHHHHHHHH
Confidence 3221 356667665554433222 2345677788899988 88888887654
No 124
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.45 E-value=2.8e-07 Score=87.11 Aligned_cols=126 Identities=22% Similarity=0.191 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCc--------cceeeecCCcccccccCCeeEEeeChhHH-HHHHhccchhhh
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMF--------GFSVSHTTRAPRAMEKDGVHYHFTERSVM-EKAIKDGKFLEF 202 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~--------g~~i~~ttr~~~~~~~~g~~y~f~s~~~~-~~~~~~~~~~e~ 202 (346)
++++++|+||+|||||||...|+..++... -..+..+|+.++..+..|+.|+|.+...+ ......+.|.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence 457899999999999999999998875210 01234688888888889998987764332 111111122221
Q ss_pred hhhhccccCCcHHHHHHHHHhCCceEEEec-------------------HHHHH---HHHcCCCCeEEEEEcCCCHHHHH
Q 019061 203 ASVHGNLYGTSVEAVEAVADAGKRCILDID-------------------VQGAR---SVRASPLDAIFIFICPPSMEELE 260 (346)
Q Consensus 203 ~~~~~~~yg~~~~~i~~~~~~~~~~iLD~~-------------------~~~~~---~l~~~~~~~~~ill~~p~~~~l~ 260 (346)
. .+.++++...++.+++.+- +.++. .+.........++..+++.++|.
T Consensus 119 a----------~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~ 188 (339)
T 3a8t_A 119 A----------GKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLT 188 (339)
T ss_dssp H----------HHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHH
T ss_pred H----------HHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHH
Confidence 1 1234444455666655531 11111 11111122345555666799999
Q ss_pred HHHHcCC
Q 019061 261 ERLRARG 267 (346)
Q Consensus 261 eRL~~R~ 267 (346)
+|+..|.
T Consensus 189 ~RI~~R~ 195 (339)
T 3a8t_A 189 DYLAKRV 195 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9998873
No 125
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.44 E-value=7.2e-07 Score=76.74 Aligned_cols=24 Identities=46% Similarity=0.684 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCChHHHHHhhccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
|++++|+|||||||||+++.|.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 578999999999999999999863
No 126
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.43 E-value=3.4e-07 Score=78.65 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++.+++|+|++||||||+++.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999998765
No 127
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.43 E-value=2.4e-07 Score=82.75 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=31.1
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCC--CC--HHHHHHHHHHHHHHHH-hc--cCCCCceEEEcCCCHHHHHHHHHHHHHHh
Q 019061 246 AIFIFICPPSMEELEERLRARGT--ET--EDQILKRLRNAKEEIK-QG--KSSGIFDHILYNDKLEECYENLKVICYCL 317 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~--~~--~e~i~~Rl~~~~~~i~-~~--~~~~~~~~Vi~n~~le~~~~~l~~iI~~l 317 (346)
..++++..| .+++.+|+..|+. +. .....+|+.....+.. .| .....+..|.++.+++++.+++.+++..+
T Consensus 148 D~vi~Ld~~-~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~ 225 (230)
T 2vp4_A 148 DLIIYLRTS-PEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSI 225 (230)
T ss_dssp SEEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC----------------
T ss_pred CEEEEEeCC-HHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 345555554 7888889877653 22 1256778877665543 22 12223455667779999998888877654
No 128
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.40 E-value=2.7e-07 Score=94.15 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=40.4
Q ss_pred HHHHHcCCe-EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccc
Q 019061 112 EQKKVVGAE-VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (346)
Q Consensus 112 ~~~~~~g~~-v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~ 163 (346)
++.+.||.. .+..+.+ .+.+|++++|+||||||||||+++|.+.+++..|.
T Consensus 96 ~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 96 DCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp SEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 344566654 2455555 67799999999999999999999999999888774
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.40 E-value=3.1e-08 Score=83.86 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.2
Q ss_pred CccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
++...+|++++|+||||||||||++.|++.+ +..|
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 3556789999999999999999999999998 6677
No 130
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.39 E-value=1.4e-06 Score=75.90 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=40.1
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHH----HHHHHHHHHHHHhh
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLE----ECYENLKVICYCLM 318 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le----~~~~~l~~iI~~l~ 318 (346)
..++++..+ .+++.+|+..|+..+.+.+.+|+.........+. ..+.++.|+ +++ ++.+++.+++..+.
T Consensus 125 d~vi~l~~~-~e~~~~Rl~~R~~~~~e~~~~r~~~q~~~~~~~~---~ad~vIdn~~~~~~~~~~~~~~i~~~~~~~~ 198 (206)
T 1jjv_A 125 DRILVVDVS-PQTQLARSAQRDNNNFEQIQRIMNSQVSQQERLK---WADDVINNDAELAQNLPHLQQKVLELHQFYL 198 (206)
T ss_dssp SEEEEEECC-HHHHHHHHC-----CHHHHHHHHHHSCCHHHHHH---HCSEEEECCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHHH---hCCEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 345555554 7899999988865677888888764111111111 245667655 788 78888877776543
No 131
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.39 E-value=2.9e-07 Score=92.70 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=40.0
Q ss_pred HHHHcCCe-EEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccc
Q 019061 113 QKKVVGAE-VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (346)
Q Consensus 113 ~~~~~g~~-v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~ 163 (346)
+.+.||.. .+..+.+ .+.+|++++|+||||||||||+++|.+.+++..|.
T Consensus 27 ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 27 CVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp EEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 44566644 2455555 67799999999999999999999999999887774
No 132
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.39 E-value=1.9e-06 Score=73.33 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=23.7
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhcc
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
...+|++++|+||||||||||++++.+
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 355899999999999999999998654
No 133
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.38 E-value=8.2e-07 Score=90.55 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=31.5
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
...+|++++|+||||||||||+++|.+.+.|..|
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G 132 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 3568999999999999999999999999998888
No 134
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.36 E-value=5.1e-06 Score=73.76 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccc-----hhhhhhhh
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK-----FLEFASVH 206 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~-----~~e~~~~~ 206 (346)
+|..++|.|++||||||+++.|...+.. .+ ..++.+.. +.. -...+...+.... ..+..-|.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~----~~~~ep~~----~t~----~g~~ir~~l~~~~~~~~~~~~~llf~ 70 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP-NC----KLLKFPER----STR----IGGLINEYLTDDSFQLSDQAIHLLFS 70 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS-SE----EEEESSCT----TSH----HHHHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc-cc----eEEEecCC----CCh----HHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 6899999999999999999999998764 12 11222110 000 0111222111111 01111122
Q ss_pred ccccCCcHHHHHHHHHhCCceEEEecHH--------------HHHHHH---cCCCC-eEEEEE-cCCCHHHHHHHHHcCC
Q 019061 207 GNLYGTSVEAVEAVADAGKRCILDIDVQ--------------GARSVR---ASPLD-AIFIFI-CPPSMEELEERLRARG 267 (346)
Q Consensus 207 ~~~yg~~~~~i~~~~~~~~~~iLD~~~~--------------~~~~l~---~~~~~-~~~ill-~~p~~~~l~eRL~~R~ 267 (346)
..-+. ..+.+...++.|..++.|=... ....+. ...+. ..++++ ..| .++..+|...++
T Consensus 71 a~R~~-~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~-pe~~~~R~~~~~ 148 (216)
T 3tmk_A 71 ANRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQD-VDNNAEKSGFGD 148 (216)
T ss_dssp HHHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSC-CSCGGGCCSSSC
T ss_pred HHHHH-HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCC-HHHHHHHhccCc
Confidence 22122 2345666778889899882111 112222 12222 345665 444 355666765432
Q ss_pred C--CCHHHHHHHHHHHHHHHHhc---cCCCCceEEE-cCCCHHHHHHHHHHHHHHhh
Q 019061 268 T--ETEDQILKRLRNAKEEIKQG---KSSGIFDHIL-YNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 268 ~--~~~e~i~~Rl~~~~~~i~~~---~~~~~~~~Vi-~n~~le~~~~~l~~iI~~l~ 318 (346)
+ +. ....+|+.....++... ..+.-+..|+ ++.+++++.+++.+++....
T Consensus 149 dr~E~-~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l 204 (216)
T 3tmk_A 149 ERYET-VKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVL 204 (216)
T ss_dssp CTTCC-HHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccH-HHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 2 33 46777777766554331 1234466777 78899999999999887654
No 135
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.34 E-value=1.1e-06 Score=76.69 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+|.+++|+|++||||||+++.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999988653
No 136
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.27 E-value=3.1e-06 Score=82.25 Aligned_cols=136 Identities=12% Similarity=0.096 Sum_probs=74.6
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccCC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg~ 212 (346)
+.+++|+||||||||||+|+|.+..++..|......+...+ .+|+|+.. .++.+ ++.++..+... ..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~------~~~v~q~~-~~~~l----tv~D~~g~~~~--~~ 135 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM------ERHPYKHP-NIPNV----VFWDLPGIGST--NF 135 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C------CCEEEECS-SCTTE----EEEECCCGGGS--SC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce------eEEecccc-ccCCe----eehHhhcccch--HH
Confidence 34999999999999999999999988877732221111000 14555542 22221 22222211100 01
Q ss_pred cHHHHHHHH--Hh-CCceEEEec--HH----HHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 019061 213 SVEAVEAVA--DA-GKRCILDID--VQ----GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (346)
Q Consensus 213 ~~~~i~~~~--~~-~~~~iLD~~--~~----~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~ 282 (346)
..+...+.. .. .....+++. .+ -++.+.. ...+..+....|+...++|+..+.+..+...+.+.+..+.
T Consensus 136 ~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~-~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM-MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp CHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH-TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHh-cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 111111111 11 122235543 11 1222232 2346667777888889999999999888888888887764
No 137
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.26 E-value=6.9e-07 Score=81.03 Aligned_cols=26 Identities=38% Similarity=0.713 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.+|.+++|+|||||||||++++|...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999943
No 138
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.24 E-value=8.7e-06 Score=71.08 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=86.2
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhh---hhhhccccC
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF---ASVHGNLYG 211 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~---~~~~~~~yg 211 (346)
.++|-|+-||||||+++.|...+.. .|..+.. |+.+.... ..+.+............ .-+.... .
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~-~g~~v~~-treP~~t~---------~~~~ir~~l~~~~~~~~~~~ll~~a~r-~ 69 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKVIL-KREPGGTE---------TGEKIRKILLEEEVTPKAELFLFLASR-N 69 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEE-EESSCSSH---------HHHHHHHHHHHSCCCHHHHHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEE-EECCCCCc---------HHHHHHHHhhcccCChHHHHHHHHHHH-H
Confidence 5788999999999999999887643 3433332 22221100 01111111111111100 0011100 0
Q ss_pred CcHHHHHHHHHhCCceEEEec---------------HHHHHHH---HcCCCC-eEEEEEcCCCHHHHHHHHHcCCCCCHH
Q 019061 212 TSVEAVEAVADAGKRCILDID---------------VQGARSV---RASPLD-AIFIFICPPSMEELEERLRARGTETED 272 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~~---------------~~~~~~l---~~~~~~-~~~ill~~p~~~~l~eRL~~R~~~~~e 272 (346)
.....+...+..|..++.|=. .+....+ ....+. ..++++..| .++..+|...++.....
T Consensus 70 ~~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~R~~~~dr~e~~ 148 (197)
T 3hjn_A 70 LLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD-VETALKRKGELNRFEKR 148 (197)
T ss_dssp HHHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHC---CTTCCH
T ss_pred HHHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcC-hHHHHHhCcCcCccccH
Confidence 112345556678888888821 1122222 112222 344555544 67777787666543334
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEcCCCHHHHHHHHHHHHHH
Q 019061 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKVICYC 316 (346)
Q Consensus 273 ~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~~le~~~~~l~~iI~~ 316 (346)
...+|+.....++.... +..+..|+++.+++++.+++.+.|++
T Consensus 149 ef~~rv~~~y~~la~~~-~~~~~~IDa~~~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 149 EFLERVREGYLVLAREH-PERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhC-CCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 67777766554543322 33466788888999999988877753
No 139
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.23 E-value=8.1e-06 Score=70.40 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=40.6
Q ss_pred EEEEEcCCCHHHHHHHHHcCCCCCH----HHHHHHHHHHHHH-HHhccCCCCceEEE-cCCCHHHHHHHHHHHHHHhh
Q 019061 247 IFIFICPPSMEELEERLRARGTETE----DQILKRLRNAKEE-IKQGKSSGIFDHIL-YNDKLEECYENLKVICYCLM 318 (346)
Q Consensus 247 ~~ill~~p~~~~l~eRL~~R~~~~~----e~i~~Rl~~~~~~-i~~~~~~~~~~~Vi-~n~~le~~~~~l~~iI~~l~ 318 (346)
.+|++..| .+++.+|+..|+.... ....+++.....+ ...|.. ...+.++ .+.+++++.+++.+.+..+.
T Consensus 127 ~vi~L~~~-~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~Id~~~~~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 127 IVIYLRVS-TKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVY-DFPFFVVDAELDVKTQIELIMNKLNSIK 202 (205)
T ss_dssp EEEEEECC-HHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTT-TSCEEEEETTSCHHHHHHHHHHHHHHC-
T ss_pred EEEEEeCC-HHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccc-cCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 45666655 7888899988753221 1344566554443 233210 2234444 44589999998888876553
No 140
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.22 E-value=3.6e-06 Score=72.20 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.9
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..+|++++|+|||||||||+++.|.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999999999987
No 141
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.22 E-value=3.2e-06 Score=78.10 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=51.0
Q ss_pred CccccchhhccccCCCCeeEEEeCCCh---HHHHHH---HHHcCCeEEEeccC-ccC-----------------------
Q 019061 81 LLNEDRILVIKKGSSSDDCLWFLEVDT---PYVREQ---KKVVGAEVVAWSKG-VIG----------------------- 130 (346)
Q Consensus 81 ~l~~dr~l~~~~~~~~~~~i~~~k~D~---~~~~~~---~~~~g~~v~~~~~~-~~~----------------------- 130 (346)
.+ ++++ .+.+.++++||+|. +..+.+ .+..|++++..|+. ..+
T Consensus 43 ~l--~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~ 115 (282)
T 1puj_A 43 MI--EDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKG 115 (282)
T ss_dssp HH--HHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HH--HHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56 6665 46778999999994 222222 23457888888765 110
Q ss_pred --CCCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc
Q 019061 131 --NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA 174 (346)
Q Consensus 131 --~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~ 174 (346)
..+-.++++|.+|+|||||+|.|.+......+ ..+.||+....
T Consensus 116 ~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~ 160 (282)
T 1puj_A 116 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQW 160 (282)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC
T ss_pred CCCCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEE
Confidence 12236899999999999999999987644455 55667766543
No 142
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.21 E-value=1e-05 Score=70.47 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..++.+++|+|+|||||||+++.|.+.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578899999999999999999999875
No 143
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.21 E-value=4.3e-06 Score=76.05 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++.+++|+|++||||||+++.|...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998763
No 144
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.19 E-value=3.8e-05 Score=65.77 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..++..++|+|++||||||+++.|...
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 446789999999999999999999886
No 145
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.19 E-value=1e-05 Score=68.19 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+++++|+|||||||||+++.|.+.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998764
No 146
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.18 E-value=1e-06 Score=81.28 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=53.3
Q ss_pred CceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CH
Q 019061 225 KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KL 303 (346)
Q Consensus 225 ~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~l 303 (346)
..+++|+..-....+. .....++++..| .+++.+|+..|+..+.+.+.+|+.........+ ...+.+|.|+ ++
T Consensus 182 ~~vIveg~~l~~~~~~--~~~d~vI~l~a~-~ev~~~Rl~~R~g~s~e~~~~ri~~q~~~~~~~---~~AD~vIdn~~s~ 255 (281)
T 2f6r_A 182 TLCVIDAAMLLEAGWQ--SMVHEVWTVVIP-ETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLV---EQSNVVLSTLWES 255 (281)
T ss_dssp CEEEEECTTTTTTTGG--GGCSEEEEEECC-HHHHHHHHHHHHCCCHHHHHHHHHTSCCHHHHH---HTCSEEEECSSCH
T ss_pred CEEEEEechhhccchH--HhCCEEEEEcCC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChHhhH---hhCCEEEECCCCH
Confidence 5788887431111111 112355666655 788889998885556777777775531111111 1246677666 89
Q ss_pred HHHHHHHHHHHHHhh
Q 019061 304 EECYENLKVICYCLM 318 (346)
Q Consensus 304 e~~~~~l~~iI~~l~ 318 (346)
+++.+++.+++..+.
T Consensus 256 eel~~~I~~~l~~l~ 270 (281)
T 2f6r_A 256 HVTQSQVEKAWNLLQ 270 (281)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887764
No 147
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.18 E-value=2.4e-05 Score=66.37 Aligned_cols=27 Identities=33% Similarity=0.504 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++.+++|.|++||||||+++.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987653
No 148
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.18 E-value=3.7e-06 Score=89.53 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=32.9
Q ss_pred HHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhcc
Q 019061 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 115 ~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
+.||...++.+.++.+.+|++++|+||||||||||+++|.+
T Consensus 443 ~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 443 LAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34555555555556677999999999999999999999985
No 149
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.17 E-value=2.3e-07 Score=82.12 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=56.7
Q ss_pred CceEEEe---cH-HHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcC
Q 019061 225 KRCILDI---DV-QGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYN 300 (346)
Q Consensus 225 ~~~iLD~---~~-~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n 300 (346)
..+++|+ .. .+.... ...++++..| .++..+|+..|+..+.+.+++|+.. |+.........|.||.|
T Consensus 113 ~~vv~d~pLL~E~~~~~~~-----~D~vi~V~ap-~e~r~~Rl~~Rdg~s~eea~~ri~~---Q~~~eek~~~AD~VIdN 183 (210)
T 4i1u_A 113 PYVIFVVPLLVESRNWKAR-----CDRVLVVDCP-VDTQIARVMQRNGFTREQVEAIIAR---QATREARLAAADDVIVN 183 (210)
T ss_dssp SSEEEECTTCTTCHHHHHH-----CSEEEEEECC-HHHHHHHHHHHHCCCHHHHHHHHHH---SCCHHHHHHTCSEEEEC
T ss_pred CEEEEEEecccccCCcccc-----CCeEEEEECC-HHHHHHHHHhcCCCCHHHHHHHHHH---cCChHHHHHhCCEEEEC
Confidence 4677885 22 333222 2345555554 7888999999977788899888853 22211112346788877
Q ss_pred C--CHHHHHHHHHHHHHHhhc
Q 019061 301 D--KLEECYENLKVICYCLMQ 319 (346)
Q Consensus 301 ~--~le~~~~~l~~iI~~l~~ 319 (346)
+ ++++..+++.+++..+..
T Consensus 184 ~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 184 DAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 6 899999999988887654
No 150
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.17 E-value=2.5e-05 Score=65.60 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++++|+|++||||||+++.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998864
No 151
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.15 E-value=1.1e-05 Score=74.39 Aligned_cols=63 Identities=16% Similarity=0.036 Sum_probs=39.3
Q ss_pred HhCCceEEEecH---HHHHHHH---cCCCCeEEEEEcCCCHHHHHHHHHcCC--CCCHHHHHHHHHHHHHH
Q 019061 222 DAGKRCILDIDV---QGARSVR---ASPLDAIFIFICPPSMEELEERLRARG--TETEDQILKRLRNAKEE 284 (346)
Q Consensus 222 ~~~~~~iLD~~~---~~~~~l~---~~~~~~~~ill~~p~~~~l~eRL~~R~--~~~~e~i~~Rl~~~~~~ 284 (346)
..+..+++|... .....+. ........+++...+.+++.+|+..|+ ....+.++++++.+...
T Consensus 76 ~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i~~~~~~~~~~ 146 (301)
T 1ltq_A 76 DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREY 146 (301)
T ss_dssp TTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHHhcc
Confidence 567788998633 2222222 222223334444456899999999886 34678899998887654
No 152
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.12 E-value=4e-06 Score=76.04 Aligned_cols=123 Identities=11% Similarity=0.025 Sum_probs=64.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCCc--cce------eeecCCcccccccCCeeEEeeChhHHHH-HHhccchhhhhh
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSMF--GFS------VSHTTRAPRAMEKDGVHYHFTERSVMEK-AIKDGKFLEFAS 204 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~~--g~~------i~~ttr~~~~~~~~g~~y~f~s~~~~~~-~~~~~~~~e~~~ 204 (346)
++++|+||+||||||+++.|++.+.... ... ...+|..+...+..+..|+|.+...+.. .. ....|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~---~~~~f~~ 78 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGIL---DAESAHR 78 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSC---CHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccc---cHHHHHH
Confidence 4789999999999999999988654210 000 0123444444455666676655321110 00 0011111
Q ss_pred hhccccCCcHHHHHHHHHhCCceEEEecH-HHHHHHHcC-----CCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 205 VHGNLYGTSVEAVEAVADAGKRCILDIDV-QGARSVRAS-----PLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 205 ~~~~~yg~~~~~i~~~~~~~~~~iLD~~~-~~~~~l~~~-----~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
. ....+ +....+..+++++.. ...+.+... ......+++..|..+++.+|+..|.
T Consensus 79 ~-------~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 79 R-------LIFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp H-------HHHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred H-------HHHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 0 11223 333466777887532 223333222 2234566777665688888888774
No 153
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.11 E-value=1.9e-05 Score=67.14 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+++.++|+|++||||||+++.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
No 154
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.11 E-value=3e-05 Score=64.85 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.1
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998864
No 155
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.09 E-value=5.1e-06 Score=72.27 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=26.3
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+|++++|+|||||||||+++.|.+.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999998875
No 156
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.08 E-value=7e-06 Score=79.91 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhhhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~~~~~~yg 211 (346)
.+.+++|+|+|||||||+++.|...+. |.+.+.+.+. .|.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~-----------------------~~~i~~D~~~-----------------~~~ 296 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG-----------------------YVHVNRDTLG-----------------SWQ 296 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT-----------------------CEECCGGGSC-----------------SHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC-----------------------cEEEccchHH-----------------HHH
Confidence 468899999999999999999987542 1112221110 011
Q ss_pred CcHHHHHHHHHhCCceEEEec---HH---HHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCC
Q 019061 212 TSVEAVEAVADAGKRCILDID---VQ---GARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (346)
Q Consensus 212 ~~~~~i~~~~~~~~~~iLD~~---~~---~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~ 267 (346)
.....+...+..+..+++|.. .. ....+.+.......++...++.+++.+|+..|.
T Consensus 297 ~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~ 358 (416)
T 3zvl_A 297 RCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE 358 (416)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhc
Confidence 112344555667888999952 22 222222222223344444667899999988774
No 157
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.06 E-value=1.7e-06 Score=80.88 Aligned_cols=59 Identities=32% Similarity=0.299 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCc--------cceeeecCCcccccccCCeeEEeeChhHH
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMF--------GFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~--------g~~i~~ttr~~~~~~~~g~~y~f~s~~~~ 190 (346)
++++++|+||+|||||||+..|+..++... -..+..+|+.++..+..|+.|+|.+...+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~ 68 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDP 68 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCCh
Confidence 457899999999999999999988765210 01345688888888999999998765433
No 158
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.06 E-value=1.1e-05 Score=69.95 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=42.5
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHHHHh
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVICYCL 317 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~~l 317 (346)
..++++.. +.+++.+|+..|+ .+.+.+.+|+........+ ....+.++.++ +++++.+++.+++..+
T Consensus 125 ~~~i~l~~-~~e~~~~Rl~~R~-~~~~~~~~~~~~~~~~~~~---~~~ad~vId~~~~~~~~~~~i~~~l~~~ 192 (204)
T 2if2_A 125 DKLIVVYA-PYEVCKERAIKRG-MSEEDFERRWKKQMPIEEK---VKYADYVIDNSGSIEETYKQVKKVYEEL 192 (204)
T ss_dssp SEEEEECC-CHHHHHHHHHHTC-CCHHHHHHHHTTSCCHHHH---GGGCSEECCCSSCHHHHHHHHHHHHHTT
T ss_pred CEEEEEEC-CHHHHHHHHHHcC-CCHHHHHHHHHhCCChhHH---HhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 34555555 4789999998884 4566677776543221111 12235666655 8999988888877655
No 159
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.06 E-value=4.5e-07 Score=79.29 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCChHHHHHhhccccC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++++|.|++||||||+++.|...+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999988765
No 160
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.04 E-value=1.8e-06 Score=83.39 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=57.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCc--------cceeeecCCcccccccCCeeEEeeChhHHHHHHhccchhhhhh
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMF--------GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~--------g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~~~~e~~~ 204 (346)
.++++|+||+|||||||+..|+..++... -..+.++|+.++..+..|+.|+|.+...+......+.|.+..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a- 80 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC- 80 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH-
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH-
Confidence 35789999999999999999988765310 012356888888899999999987754443332223333332
Q ss_pred hhccccCCcHHHHHHHHHhCCceEEE
Q 019061 205 VHGNLYGTSVEAVEAVADAGKRCILD 230 (346)
Q Consensus 205 ~~~~~yg~~~~~i~~~~~~~~~~iLD 230 (346)
...++++...|+.++|-
T Consensus 81 ---------~~~i~~i~~~g~~pilV 97 (409)
T 3eph_A 81 ---------MNAIEDIHRRGKIPIVV 97 (409)
T ss_dssp ---------HHHHHHHHTTTCEEEEE
T ss_pred ---------HHHHHHHHhcCCCEEEE
Confidence 23445555566655554
No 161
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.03 E-value=5.6e-07 Score=82.67 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=22.8
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
.++|+||||||||||+|+|.+...+..|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 5899999999999999999999888776
No 162
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.02 E-value=5.4e-06 Score=72.70 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=27.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
..+|.+++|+|++||||||+++.|.+.+.+..|
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 357889999999999999999999987753334
No 163
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.02 E-value=1.1e-05 Score=69.56 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=41.6
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHHHHh
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVICYCL 317 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~~l 317 (346)
..++++.. +.+.+.+|+..|+..+.+.+.+++......... ...++.++.+. +++++.+++.+++..+
T Consensus 126 d~~i~l~~-~~e~~~~R~~~R~~~~~~~~~~~i~~~~~~~~~---~~~ad~vId~~~~~~~~~~~i~~~~~~~ 194 (203)
T 1uf9_A 126 HGTLLVAA-PLEERVRRVMARSGLSREEVLARERAQMPEEEK---RKRATWVLENTGSLEDLERALKAVLAEL 194 (203)
T ss_dssp SEEEEECC-CHHHHHHHHHTTTCCTTHHHHHHHTTSCCHHHH---HHHCSEEECCSSHHHHHHHHHHHHHHSC
T ss_pred CEEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHHCCChhHH---HHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 35666665 488999999888655556666666542111111 11235666665 6888888887777654
No 164
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.02 E-value=1.4e-05 Score=68.11 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.+++|+|++||||||+++.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998864
No 165
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.99 E-value=4.2e-06 Score=71.25 Aligned_cols=28 Identities=32% Similarity=0.257 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+|.+++|+|++||||||+++.|.+.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999988753
No 166
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.98 E-value=4.6e-06 Score=77.84 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=30.9
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+...+|++++|+|||||||||++++|++.+.+..|
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g 129 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT 129 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 44568999999999999999999999999877666
No 167
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.98 E-value=7.3e-05 Score=62.68 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.+++|+|++||||||+++.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998864
No 168
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.94 E-value=2.6e-06 Score=79.46 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=44.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCC--------ccceeeecCCcccccccCCeeEEeeChhH
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPRAMEKDGVHYHFTERSV 189 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~--------~g~~i~~ttr~~~~~~~~g~~y~f~s~~~ 189 (346)
.+++++|+||+|||||||+..|+..++.. .-..+.++|+.++..+.+++.|+|.+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~ 74 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRD 74 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCC
Confidence 35689999999999999999998876521 00123568888888888899999876443
No 169
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.94 E-value=1.6e-05 Score=76.16 Aligned_cols=82 Identities=20% Similarity=0.088 Sum_probs=54.6
Q ss_pred CCCeeEEEeCCCh--H-----HHHH----HHHHcCC---eEEEeccC-cc-----------CCCCCeEEEEcCCCCChHH
Q 019061 95 SSDDCLWFLEVDT--P-----YVRE----QKKVVGA---EVVAWSKG-VI-----------GNVEKPVVITGPSGVGKGT 148 (346)
Q Consensus 95 ~~~~~i~~~k~D~--~-----~~~~----~~~~~g~---~v~~~~~~-~~-----------~~~g~~~~l~GpsG~GKsT 148 (346)
+.+.++++||+|. . .+++ ..+..|+ .++.+|+. .. ..+++.++++|.+|+||||
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKSt 177 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKST 177 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHH
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHH
Confidence 6678889999993 1 2222 2355676 68888865 21 1257889999999999999
Q ss_pred HHHhhcccc-----CCCccceeeecCCccccccc
Q 019061 149 LISMLMKEF-----PSMFGFSVSHTTRAPRAMEK 177 (346)
Q Consensus 149 l~~~L~~~~-----~~~~g~~i~~ttr~~~~~~~ 177 (346)
|+|.|.+.. ....+ ..++||+.......
T Consensus 178 liN~L~~~~~~~~~~~~~~-~~~gtT~~~~~~~~ 210 (369)
T 3ec1_A 178 FINRIIEEATGKGNVITTS-YFPGTTLDMIEIPL 210 (369)
T ss_dssp HHHHHHHHHHHTTCCCEEE-ECTTSSCEEEEEEC
T ss_pred HHHHHHhhccCCccceeec-CCCCeEEeeEEEEe
Confidence 999999872 11122 34467766554433
No 170
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.91 E-value=1.5e-05 Score=68.22 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=25.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+|.+++|+|++||||||+++.|...+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34788999999999999999999988764
No 171
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.91 E-value=3e-05 Score=68.22 Aligned_cols=25 Identities=40% Similarity=0.724 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.+++|+|||||||||+++.|.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998865
No 172
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.90 E-value=1.7e-07 Score=96.79 Aligned_cols=23 Identities=48% Similarity=0.472 Sum_probs=21.0
Q ss_pred ccCCCCCeEEEEcCCCCChHHHH
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLI 150 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~ 150 (346)
+.+.+|++++|+||||||||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 45679999999999999999997
No 173
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.89 E-value=0.00011 Score=64.18 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=51.6
Q ss_pred hCCceEEEecHHHHHHHHcCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----Hhc-----cCCCC
Q 019061 223 AGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEI----KQG-----KSSGI 293 (346)
Q Consensus 223 ~~~~~iLD~~~~~~~~l~~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i----~~~-----~~~~~ 293 (346)
....+++++-- ...+.......+.||+..+ ++.+.+|+..+...+.+...+++.....+. ..+ .....
T Consensus 97 ~~~~~Vi~Gr~--g~~vl~~~~~~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~ 173 (201)
T 3fdi_A 97 EKESFVIVGRC--AEEILSDNPNMISAFILGD-KDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRT 173 (201)
T ss_dssp SCCCEEEESTT--HHHHTTTCTTEEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGG
T ss_pred cCCCEEEEECC--cchhcCCCCCeEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 34567777642 2223222234677777775 788888887654445556666654433221 111 01223
Q ss_pred ceEEEcCC--CHHHHHHHHHHHHH
Q 019061 294 FDHILYND--KLEECYENLKVICY 315 (346)
Q Consensus 294 ~~~Vi~n~--~le~~~~~l~~iI~ 315 (346)
++.++.++ +++++.+.|.+.+.
T Consensus 174 ~dl~Idt~~l~~eevv~~I~~~i~ 197 (201)
T 3fdi_A 174 YDICIKIGKVDVDTATDMIIKYID 197 (201)
T ss_dssp CSEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHHHHHHHHH
Confidence 56777665 88998888777665
No 174
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.89 E-value=1.8e-05 Score=75.82 Aligned_cols=92 Identities=24% Similarity=0.221 Sum_probs=56.3
Q ss_pred CCCeeEEEeCCCh--H-----HHHH----HHHHcCC---eEEEeccC-ccC-----------CCCCeEEEEcCCCCChHH
Q 019061 95 SSDDCLWFLEVDT--P-----YVRE----QKKVVGA---EVVAWSKG-VIG-----------NVEKPVVITGPSGVGKGT 148 (346)
Q Consensus 95 ~~~~~i~~~k~D~--~-----~~~~----~~~~~g~---~v~~~~~~-~~~-----------~~g~~~~l~GpsG~GKsT 148 (346)
+.+.++++||+|. . .+++ ..+..|+ .++.+|+. ..+ .++..++++|.+|+||||
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKSt 175 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKST 175 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHH
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhH
Confidence 6788999999993 1 2222 2456787 78888865 211 257889999999999999
Q ss_pred HHHhhccccCCC------ccceeeecCCcccccccCCeeEEeeCh
Q 019061 149 LISMLMKEFPSM------FGFSVSHTTRAPRAMEKDGVHYHFTER 187 (346)
Q Consensus 149 l~~~L~~~~~~~------~g~~i~~ttr~~~~~~~~g~~y~f~s~ 187 (346)
|+|.|.+..... .+ ..++||+...........++..++
T Consensus 176 liN~L~~~~~~~~~~~~~~~-~~~gtT~~~~~~~~~~~~~liDtP 219 (368)
T 3h2y_A 176 FINRMIKEFSDETENVITTS-HFPGTTLDLIDIPLDEESSLYDTP 219 (368)
T ss_dssp HHHHHHHHHTTSCSSCCEEE-CCC----CEEEEESSSSCEEEECC
T ss_pred HHHHHHhhhccccccceecC-CCCCeecceEEEEecCCeEEEeCC
Confidence 999998864211 11 344677765554433222333333
No 175
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.88 E-value=7.3e-06 Score=76.52 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+|++++|+|||||||||++++|++.+.+..|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g 131 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK 131 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999888766
No 176
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.87 E-value=7.4e-06 Score=72.01 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=43.0
Q ss_pred EEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEcCC-CHHHHHHHHHHHHHHhh
Q 019061 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKVICYCLM 318 (346)
Q Consensus 247 ~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~~Vi~n~-~le~~~~~l~~iI~~l~ 318 (346)
.++|+.. +.+++.+|+..|+..+.+.+.+|+......... ....+.++.++ +++++.+++.+++..+.
T Consensus 128 ~vi~l~~-~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~---~~~ad~vId~~~~~~~~~~~I~~~l~~~~ 196 (218)
T 1vht_A 128 RVLVVDV-SPETQLKRTMQRDDVTREHVEQILAAQATREAR---LAVADDVIDNNGAPDAIASDVARLHAHYL 196 (218)
T ss_dssp EEEEEEC-CHHHHHHHHHHHHTCCHHHHHHHHHHSCCHHHH---HHHCSEEEECSSCTTSHHHHHHHHHHHHH
T ss_pred EEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhcCChHHH---HHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 5666665 478999999888655677777777542111111 11135566555 78888888888877653
No 177
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.87 E-value=3.2e-06 Score=74.63 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
.+|++++|+||||||||||+++|++. ++..|
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 47899999999999999999999999 87777
No 178
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.86 E-value=2.6e-05 Score=66.05 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.++|+|++||||||+++.|...+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998865
No 179
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.86 E-value=2.4e-05 Score=70.66 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=25.4
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
...+..++|+|+|||||||+++.|...+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34678999999999999999999988764
No 180
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.83 E-value=0.00044 Score=61.46 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=24.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..++.+++|+|++||||||+++.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999998854
No 181
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.83 E-value=8.5e-05 Score=66.12 Aligned_cols=97 Identities=21% Similarity=0.223 Sum_probs=54.7
Q ss_pred HHHHHHhCCceEEEecHHHHHHHH--cCCCCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hcc----
Q 019061 217 VEAVADAGKRCILDIDVQGARSVR--ASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK-QGK---- 289 (346)
Q Consensus 217 i~~~~~~~~~~iLD~~~~~~~~l~--~~~~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~-~~~---- 289 (346)
+.+.... ..+++++.--+ --+. ........||+..+ ++.+.+|+..+...+.+...+++.....+.. +|.
T Consensus 109 i~~la~~-~~~Vi~Grggg-~vl~~~~~~~~~~~VfL~A~-~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg 185 (223)
T 3hdt_A 109 MRELAES-EPCIFVGRAAG-YVLDQDEDIERLIRIFVYTD-KVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTG 185 (223)
T ss_dssp HHHHHHH-SCEEEESTTHH-HHHHHCTTCCEEEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhC-CCEEEEeCCcc-hhcccccCCCCeEEEEEECC-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444333 35677654222 1221 33334567777776 8888888876544445556566555433311 111
Q ss_pred ----CCCCceEEEcCC--CHHHHHHHHHHHHHH
Q 019061 290 ----SSGIFDHILYND--KLEECYENLKVICYC 316 (346)
Q Consensus 290 ----~~~~~~~Vi~n~--~le~~~~~l~~iI~~ 316 (346)
.+..++.++.+. +++++.+.|.+.++.
T Consensus 186 ~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 186 SEWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp SCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 123467777765 889998888777753
No 182
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.82 E-value=9.2e-06 Score=76.09 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
..+|.+++|+||||||||||+++|.+.+++..|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 568999999999999999999999998876444
No 183
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.81 E-value=1.5e-05 Score=76.17 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=30.8
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+...+|++++|+|||||||||+++.|++.+.+..|
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G 186 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT 186 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhccccCC
Confidence 44568999999999999999999999999877666
No 184
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.81 E-value=7.9e-06 Score=82.14 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
..+|++++|+||||||||||+++|.+.+.|..|
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 458999999999999999999999999988877
No 185
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.80 E-value=0.00062 Score=58.61 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=39.7
Q ss_pred eEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCce-EEEcCC--CHHHHHHHHHHHHH
Q 019061 246 AIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD-HILYND--KLEECYENLKVICY 315 (346)
Q Consensus 246 ~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i~~~~~~~~~~-~Vi~n~--~le~~~~~l~~iI~ 315 (346)
...||+..| .+.+.+|+..|...+.+.+.+++..-......+. ....+ .++.+. +++++.+++.+++.
T Consensus 137 d~~i~l~a~-~e~~~~R~~~r~~~~~~~~~~~~~~R~~~~~~~~-~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 137 AHKFYLTAS-PEVRAWRRARERPQAYEEVLRDLLRRDERDKAQS-APAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp SEEEEEECC-HHHHHHHHHHTSSSCHHHHHHHHHHHHHTC--CC-CCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEECC-HHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcc-cCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 355666655 7888888887765566677776653211110000 22233 555554 89998888777653
No 186
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.76 E-value=2.1e-05 Score=75.14 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=32.8
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
+...+|+.++|+||||||||||+++|.+.+++..| .+.
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g-~I~ 207 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR-LIT 207 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC-EEE
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce-EEE
Confidence 34568999999999999999999999999988777 443
No 187
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.74 E-value=0.00028 Score=61.19 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
...+++|+|++||||||+++.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 188
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.74 E-value=1.4e-05 Score=79.04 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=30.4
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+...+|.+++|+|+|||||||++++|++.+.+..|
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G 322 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK 322 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC
Confidence 34568999999999999999999999998876656
No 189
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.72 E-value=1.1e-05 Score=70.71 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.+|++++|+||||||||||+++|.+.+++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999999998764
No 190
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.69 E-value=0.0001 Score=74.15 Aligned_cols=31 Identities=39% Similarity=0.415 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+|.+++|+|+||||||||+++|.+.+.+..|
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 6889999999999999999999998765444
No 191
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.69 E-value=1.2e-05 Score=70.16 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+|.+++|+|||||||||+++.|.+.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678999999999999999999999865
No 192
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.65 E-value=1.8e-05 Score=74.69 Aligned_cols=32 Identities=22% Similarity=0.146 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
.+|.+++|+|||||||||++++|++.+.+..|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g 158 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF 158 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999877666
No 193
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.64 E-value=2e-06 Score=87.75 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=22.0
Q ss_pred eEEEEcCCCCChHHHHHhhccccCC-Ccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPS-MFG 162 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~-~~g 162 (346)
.++|+||||||||||+++|.+...| ..|
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG 75 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSG 75 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC------
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCC
Confidence 4999999999999999999999766 455
No 194
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.64 E-value=0.00019 Score=64.60 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+..+++|.|++||||||+++.|...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346799999999999999999988654
No 195
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.63 E-value=1.3e-05 Score=73.03 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCC-cc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSM-FG 162 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~-~g 162 (346)
..+|++++|+|||||||||+++.|.+.+++. .|
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G 55 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY 55 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCC
Confidence 4588999999999999999999999998765 56
No 196
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.61 E-value=1.1e-05 Score=79.52 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 109 YVREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 109 ~~~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+++++.+.++ ..++...+|++++|+||||||||||+++|++...+..|
T Consensus 120 ~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 120 YIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred hhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 4556666665 23455679999999999999999999999999877667
No 197
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.59 E-value=2.4e-05 Score=72.97 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=29.0
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++.+.+|++++|+||||||||||++.|.+.+
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34567899999999999999999999999987
No 198
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.57 E-value=2e-05 Score=68.41 Aligned_cols=29 Identities=41% Similarity=0.611 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
|++++|+|||||||||++++|++.+. ..|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 57899999999999999999999886 556
No 199
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.56 E-value=2.7e-05 Score=66.81 Aligned_cols=24 Identities=38% Similarity=0.722 Sum_probs=22.2
Q ss_pred eEEEEcCCCCChHHHHHhhccccC
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++|+||||||||||+++|++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999875
No 200
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.54 E-value=5e-05 Score=71.63 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.8
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
...+|+.++|+||||||||||+++|.+.+++..|
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g 200 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER 200 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 3457899999999999999999999999988777
No 201
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.53 E-value=3.2e-05 Score=72.12 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccC--CCcc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFP--SMFG 162 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~--~~~g 162 (346)
.+|.+++|+|||||||||++++|.+.+. +..|
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 5789999999999999999999999876 5555
No 202
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.53 E-value=0.00014 Score=70.99 Aligned_cols=91 Identities=27% Similarity=0.302 Sum_probs=51.2
Q ss_pred cCCCCeeEEEeCCCh-HH-HHHH-H--HHcCC-eEEEeccC-cc---------------CC-C---------CCeEEEEc
Q 019061 93 GSSSDDCLWFLEVDT-PY-VREQ-K--KVVGA-EVVAWSKG-VI---------------GN-V---------EKPVVITG 140 (346)
Q Consensus 93 ~~~~~~~i~~~k~D~-~~-~~~~-~--~~~g~-~v~~~~~~-~~---------------~~-~---------g~~~~l~G 140 (346)
..+.+.+++.||+|. +. .... . ...|. +++.+|+. +. .. . .-.++|+|
T Consensus 108 ~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG 187 (439)
T 1mky_A 108 KSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVG 187 (439)
T ss_dssp HHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEEC
T ss_pred HcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEEC
Confidence 357888999999994 22 1111 1 23455 56777654 11 00 1 13689999
Q ss_pred CCCCChHHHHHhhccccCCCccceeeecCCccccc--ccCCeeEEe
Q 019061 141 PSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAM--EKDGVHYHF 184 (346)
Q Consensus 141 psG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~--~~~g~~y~f 184 (346)
+||||||||+|+|.+......+ ..+.||+..... ..+|..+.+
T Consensus 188 ~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~~g~~~~l 232 (439)
T 1mky_A 188 RPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFIDGRKYVF 232 (439)
T ss_dssp STTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEETTEEEEE
T ss_pred CCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEECCEEEEE
Confidence 9999999999999987532222 344566554332 234544443
No 203
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.53 E-value=3.6e-05 Score=67.54 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=26.3
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
..+|++++|+||||||||||++.|++...+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 458999999999999999999999986543
No 204
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.51 E-value=2.9e-05 Score=72.91 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=37.8
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCcc--------ceeeecCCcccccccCCeeEEeeC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFG--------FSVSHTTRAPRAMEKDGVHYHFTE 186 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g--------~~i~~ttr~~~~~~~~g~~y~f~s 186 (346)
.+.++|+||+||||||++..|+..++...- .....+|+.+...+..+..|+|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid 66 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEee
Confidence 358999999999999999999987642100 011346666666666777777654
No 205
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.49 E-value=4.7e-05 Score=67.66 Aligned_cols=26 Identities=27% Similarity=0.384 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhcc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
..+|++++|+||||||||||++.|+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45899999999999999999999983
No 206
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.48 E-value=4.5e-05 Score=75.42 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=30.2
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+...+ ++++|+||||||||||+++|.+..++..|
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 44557 99999999999999999999999888766
No 207
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.43 E-value=3e-05 Score=82.63 Aligned_cols=44 Identities=27% Similarity=0.402 Sum_probs=37.2
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccCCCccceee
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~ 166 (346)
++.+.++...+|++++|+||||||||||++.|.+.+++..| .|.
T Consensus 688 iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG-~I~ 731 (986)
T 2iw3_A 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG-EVY 731 (986)
T ss_dssp SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE-EEE
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEE
Confidence 34445566779999999999999999999999999999888 443
No 208
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.42 E-value=0.0023 Score=57.12 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++.+++|.|||||||||+++.|...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 209
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.42 E-value=6e-05 Score=65.15 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.4
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+...+|..++|+|+||||||||+|+|.+..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 556688999999999999999999999875
No 210
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.40 E-value=0.00017 Score=72.64 Aligned_cols=162 Identities=15% Similarity=0.047 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccccccCCeeEEeeChhHHHHHHhcc-chhhhhhhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDG-KFLEFASVHGNLY 210 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~g~~y~f~s~~~~~~~~~~~-~~~e~~~~~~~~y 210 (346)
.+.+++|+|++||||||+++.|...+.. .| ..+.+.+.+.+...+..+ .|.+. ....+ +
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~-~G-----------------~~~~~ld~D~ir~~l~~~~~f~~~-er~~~-l 430 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA-RG-----------------RKVTLLDGDVVRTHLSRGLGFSKE-DRITN-I 430 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TT-----------------CCEEEECHHHHHHHTCTTCCSSHH-HHHHH-H
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh-cC-----------------CeEEEECchHhhhhhcccccccHH-HHHHH-H
Confidence 3678999999999999999999876431 12 122233333322211100 01100 00000 0
Q ss_pred CCcHHHHHHHHHhCCceEEEe---cHHHHHHHHcCC--CCeEEEEEcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 019061 211 GTSVEAVEAVADAGKRCILDI---DVQGARSVRASP--LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEI 285 (346)
Q Consensus 211 g~~~~~i~~~~~~~~~~iLD~---~~~~~~~l~~~~--~~~~~ill~~p~~~~l~eRL~~R~~~~~e~i~~Rl~~~~~~i 285 (346)
......+......|..+++|. ........+... .....|++.. +.+++.+|+. |+.. ......++.......
T Consensus 431 ~~i~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~-~~e~~~~Rl~-r~~~-~~~~~~~i~~~~~vr 507 (546)
T 2gks_A 431 LRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDA-PVEVCEERDV-KGLY-KKAKEGLIKGFTGVD 507 (546)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEEC-CGGGHHHHCC-SSHH-HHC------CCBTTT
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeC-CHHHHHHHhh-cccc-ccccHHHHHHHHhhh
Confidence 001122344556788899984 222222233221 2335566665 4788888875 3210 000001111000000
Q ss_pred HhccCCCCceEEEcCC--CHHHHHHHHHHHHHH
Q 019061 286 KQGKSSGIFDHILYND--KLEECYENLKVICYC 316 (346)
Q Consensus 286 ~~~~~~~~~~~Vi~n~--~le~~~~~l~~iI~~ 316 (346)
..|+.....+.+|.+. +++++.++|.+.+..
T Consensus 508 ~~~e~~~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 508 DPYEPPVAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp BCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred hccccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 1122123346666653 899998888877754
No 211
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.39 E-value=6.1e-05 Score=71.51 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.3
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+.+.+|++++|+||||||||||+++|++...+..|
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 44568999999999999999999999999887766
No 212
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.39 E-value=6.7e-05 Score=71.88 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCC-cc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSM-FG 162 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~-~g 162 (346)
..+|++++|+|||||||||+++.|.+.+++. .|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g 166 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY 166 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCc
Confidence 4578999999999999999999999988765 45
No 213
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.39 E-value=4e-05 Score=71.67 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=53.3
Q ss_pred CCccCccccchhhccccCCCCeeEEEeCCCh--HHHHHHHHHcCCeEEEeccCcc-------------------------
Q 019061 77 HSAVLLNEDRILVIKKGSSSDDCLWFLEVDT--PYVREQKKVVGAEVVAWSKGVI------------------------- 129 (346)
Q Consensus 77 ~~~~~l~~dr~l~~~~~~~~~~~i~~~k~D~--~~~~~~~~~~g~~v~~~~~~~~------------------------- 129 (346)
++...+ +||+. .-.|+|+++|-|. +++.+..+..+-+++..+....
T Consensus 68 ~~~~rl--er~l~-----~~~P~IIltrg~~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v 140 (314)
T 1ko7_A 68 ERKGRM--RKLCR-----PETPAIIVTRDLEPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLV 140 (314)
T ss_dssp HHTTHH--HHHCC-----TTCCCEEECTTCCCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEE
T ss_pred HHHHHH--HHHhc-----CCCCEEEEeCCCCCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEE
Confidence 344555 55553 5689999999883 5555566777888887665410
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
...|+-++|+|+||+||||++..|...
T Consensus 141 ~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 141 DVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 014889999999999999999999874
No 214
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.36 E-value=8.3e-05 Score=72.81 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=32.1
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+...+|++++|+||||||||||+++|++...+..|
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 56679999999999999999999999999988777
No 215
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.33 E-value=6.6e-05 Score=71.54 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMF 161 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~ 161 (346)
++.++|+||||||||||++.|.+.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 89999999999999999999999988765
No 216
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.33 E-value=4e-05 Score=65.15 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
..+|+.++|+||+|+|||||+++|++...+
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999987643
No 217
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.28 E-value=0.0024 Score=55.52 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.+++|+|++||||||+++.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998865
No 218
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.28 E-value=0.00011 Score=70.07 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=26.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~ 160 (346)
.++.+++|+|||||||||++++|++.+++.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 356799999999999999999999988765
No 219
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.27 E-value=8.1e-05 Score=70.33 Aligned_cols=35 Identities=31% Similarity=0.205 Sum_probs=30.0
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+...+|.+++|+||||||||||+++|.+.+.+..|
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 44568999999999999999999999988765545
No 220
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.26 E-value=0.00043 Score=70.56 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++.+++|+|.+||||||+++.|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998865
No 221
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.26 E-value=8.3e-05 Score=64.60 Aligned_cols=32 Identities=25% Similarity=0.094 Sum_probs=26.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
.++.+++|+|+|||||||+++.|.+.+.+..|
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 46789999999999999999999987654333
No 222
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.26 E-value=0.00011 Score=71.64 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=26.3
Q ss_pred ccCCCCCe--EEEEcCCCCChHHHHHhhcccc
Q 019061 128 VIGNVEKP--VVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 128 ~~~~~g~~--~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+...+|.+ ++|+||||||||||+|+|.+..
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 55678999 9999999999999999999874
No 223
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.22 E-value=0.00014 Score=70.71 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
.+|.+++|+|||||||||++++|++.+++..|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g 196 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSER 196 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence 36789999999999999999999999887666
No 224
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.22 E-value=4.7e-05 Score=64.99 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=24.8
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSM 160 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~ 160 (346)
++++|+|+||||||||++.|.+.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999998765
No 225
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.21 E-value=0.00019 Score=71.56 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
..+|+.++|+||+||||||++++|++..++..|
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g 289 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK 289 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC
Confidence 347889999999999999999999999988766
No 226
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.20 E-value=0.00012 Score=60.75 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
+|+.++|+||+|+|||||+++|.+...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999987653
No 227
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.15 E-value=0.00023 Score=60.36 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+| +.+|+|||||||||++++|...+.+..+
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 44 9999999999999999999887655433
No 228
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.15 E-value=0.00026 Score=66.86 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=36.4
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCC------c--cceeeecCCcccccccCCeeEEeeC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSM------F--GFSVSHTTRAPRAMEKDGVHYHFTE 186 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~------~--g~~i~~ttr~~~~~~~~g~~y~f~s 186 (346)
++++|+||+||||||++..|+..++.. . -.....+|..+...+..+..+++.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~d 68 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID 68 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHH
Confidence 589999999999999999998876521 0 0012345555555666777777554
No 229
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.11 E-value=0.00015 Score=66.62 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=29.8
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+...+|++++|+||||+|||||++.|++...+..|
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 34668999999999999999999999998765444
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.04 E-value=0.00013 Score=65.37 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.4
Q ss_pred EEEEcCCCCChHHHHHhhccccC
Q 019061 136 VVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 136 ~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++|+||||+|||||+++|++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998764
No 231
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.00 E-value=0.00026 Score=66.43 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+++|+|||||||||++++|.+.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34899999999999999999998875
No 232
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.99 E-value=0.00033 Score=61.22 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=25.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+|++++|+||||||||||++.|++...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999987654
No 233
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.94 E-value=0.003 Score=63.08 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...+++++|.+||||||+++.|...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.94 E-value=0.00019 Score=65.52 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=30.5
Q ss_pred HHHHHHHcCCeEEEeccCccCCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 110 VREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 110 ~~~~~~~~g~~v~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++++.+.++...+....++...+| ++|+||||+|||||+++|++...
T Consensus 52 l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 52 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 444444444332222223333444 99999999999999999998764
No 235
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.94 E-value=0.00021 Score=66.31 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHhhccc-cCCCcc
Q 019061 135 PVVITGPSGVGKGTLISMLMKE-FPSMFG 162 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~-~~~~~g 162 (346)
.++|+||||||||||+++|.+. ..+..|
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 3499999999999999999875 544444
No 236
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.94 E-value=0.00031 Score=65.71 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++++|+|+|||||||++|.|.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999999875
No 237
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.89 E-value=5.4e-05 Score=67.60 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
.+++|+||||||||||+++|++.+.+..|
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 67899999999999999999999888766
No 238
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.89 E-value=0.00029 Score=72.57 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.2
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhc
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLM 154 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~ 154 (346)
.+.+|++++|+||||||||||++.|.
T Consensus 344 ~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 344 KIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred EecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 45689999999999999999998764
No 239
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.87 E-value=0.0016 Score=65.82 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++.+++|+|+|||||||+++.|...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999988753
No 240
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.87 E-value=0.00047 Score=57.90 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++..++|+|++|||||||+++|.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998764
No 241
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.87 E-value=0.00038 Score=64.37 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=25.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.++.+++|+|||||||||+++.|.+.+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35789999999999999999999988753
No 242
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.86 E-value=0.00045 Score=59.07 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCChHHHHHhhccccC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
-.++|+|++|||||||+++|.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999988754
No 243
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.85 E-value=0.00047 Score=63.06 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=25.3
Q ss_pred CccCCCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
++...+| ++|+||||+|||||+++|++...+
T Consensus 40 ~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 40 GLVTPAG--VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp TCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC
Confidence 3344455 999999999999999999998654
No 244
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.84 E-value=0.00041 Score=69.37 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=28.0
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHh--hccccCCCcc
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISM--LMKEFPSMFG 162 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~--L~~~~~~~~g 162 (346)
...+|++++|+||||||||||++. +.+..++..|
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g 70 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP 70 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 456899999999999999999999 5676654444
No 245
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.80 E-value=0.00039 Score=64.41 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~ 163 (346)
+|++++|+||+||||||++..|+..+.+..|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~ 135 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK 135 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999999999887654453
No 246
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.78 E-value=0.00082 Score=64.74 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=25.5
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...+|..++|+|+||||||||+|+|.+..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~ 44 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSV 44 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44578999999999999999999999843
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.77 E-value=0.00064 Score=59.97 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=24.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..+|++++|+||||+||||++..|+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 358999999999999999999999884
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.77 E-value=0.00073 Score=58.62 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhcc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
..+|++++|+||||+||||++..|+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999999987
No 249
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.76 E-value=0.00058 Score=58.60 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.1
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|++|||||||+++|.+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998864
No 250
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.68 E-value=0.00069 Score=57.79 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
-++++|+|+|||||||+++.|.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 46899999999999999999998754
No 251
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.67 E-value=0.0008 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..++|+|++|||||||+++|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 252
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.67 E-value=0.00084 Score=65.22 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.7
Q ss_pred EEEEcCCCCChHHHHHhhccccCC
Q 019061 136 VVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 136 ~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
++|+|+||||||||+++|++...+
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 599999999999999999998653
No 253
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.66 E-value=0.0008 Score=64.49 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=26.0
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...+|+.++|+||||+||||++++|.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45688999999999999999999999864
No 254
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.65 E-value=0.00095 Score=65.05 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=49.9
Q ss_pred ccCCCCeeEEEeCCCh-HHHHHHH--HHcCC-eEEEeccC-cc------------CC---------CCCeEEEEcCCCCC
Q 019061 92 KGSSSDDCLWFLEVDT-PYVREQK--KVVGA-EVVAWSKG-VI------------GN---------VEKPVVITGPSGVG 145 (346)
Q Consensus 92 ~~~~~~~~i~~~k~D~-~~~~~~~--~~~g~-~v~~~~~~-~~------------~~---------~g~~~~l~GpsG~G 145 (346)
+..+.+.+++.||+|. +...... ...|. +++.+|+. +. .. ....++|+|.+|||
T Consensus 108 ~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvG 187 (436)
T 2hjg_A 108 YRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVG 187 (436)
T ss_dssp TTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSS
T ss_pred HHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCC
Confidence 4568889999999994 2111111 13444 56667654 11 00 12468999999999
Q ss_pred hHHHHHhhccccCCCccceeeecCCcccc--cccCCeeEEeeC
Q 019061 146 KGTLISMLMKEFPSMFGFSVSHTTRAPRA--MEKDGVHYHFTE 186 (346)
Q Consensus 146 KsTl~~~L~~~~~~~~g~~i~~ttr~~~~--~~~~g~~y~f~s 186 (346)
||||+|.|.+......+ ..+.||+.... ...++..+.+.+
T Consensus 188 KSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~~l~D 229 (436)
T 2hjg_A 188 KSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTYNQQEFVIVD 229 (436)
T ss_dssp HHHHHHHHHTSTTEEEC----------CCEEEEETTEEEEETT
T ss_pred HHHHHHHHhCCCceeec-CCCCceeeeeEEEEEECCeEEEEEE
Confidence 99999999886432122 34456655432 233444444443
No 255
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.62 E-value=0.00099 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChHHHHHhhcc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
..+.+|+||||+||||++.+|.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 256
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.58 E-value=0.0013 Score=61.18 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=27.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCCC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~ 160 (346)
..++++++++||+||||||++..|+..+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 3468899999999999999999999887654
No 257
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.57 E-value=0.0013 Score=58.38 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
...++|+|++|||||||+|.|.+......+
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 356899999999999999999987654333
No 258
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.57 E-value=0.00071 Score=71.00 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+|++++|+||||+||||+++.|.+..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999999998753
No 259
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.54 E-value=0.0012 Score=62.50 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=25.9
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.+|+++.|+||||||||||++.|+...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999999876
No 260
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.53 E-value=0.0011 Score=56.07 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|++|||||||+++|.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
No 261
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.50 E-value=0.00039 Score=66.92 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=25.5
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+...+| +++|+||||||||||+++|.....
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 445678 999999999999999999966654
No 262
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.47 E-value=0.0012 Score=60.19 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=25.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..+|++++|+||||+|||||+..|+...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999998754
No 263
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.47 E-value=0.0011 Score=62.68 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.+.+++|+|++|||||||+|+|.+...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 4678999999999999999999986543
No 264
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.45 E-value=0.0011 Score=62.23 Aligned_cols=25 Identities=36% Similarity=0.703 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...++|+||||+|||||+++|++..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3679999999999999999999986
No 265
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.42 E-value=0.00066 Score=72.13 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=27.1
Q ss_pred EEeccCccCCCCCeEEEEcCCCCChHHHHHhhcc
Q 019061 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
+..+.++...+|++++|+||||+||||+++.+..
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 3344444556799999999999999999998864
No 266
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.41 E-value=0.0014 Score=55.09 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCChHHHHHhhccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
...++|+|++|||||||++.|.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 267
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.39 E-value=0.00097 Score=61.76 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++..++|+|++|||||||+|+|.+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45589999999999999999998863
No 268
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.38 E-value=0.00088 Score=61.81 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++.+++|.|||||||||+++.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 269
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.36 E-value=0.0017 Score=63.13 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.+.+++|+||||+||||++++|.....+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 5789999999999999999999887654
No 270
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.33 E-value=0.0011 Score=70.46 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=22.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhh
Q 019061 130 GNVEKPVVITGPSGVGKGTLISML 153 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L 153 (346)
..+|++++|+||||+||||+++.+
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHH
Confidence 346899999999999999999998
No 271
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.32 E-value=0.0025 Score=52.58 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|++|||||||++.|.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 272
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.28 E-value=0.0017 Score=55.12 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
-++++|+|++||||||++..|.+.+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 35899999999999999999988764
No 273
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.27 E-value=0.0014 Score=70.62 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
|++++|+||||+||||+++.+ +...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 899999999999999999999 7653
No 274
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.21 E-value=0.0021 Score=61.22 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhcc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
..| +++|+||||||||||+++|.-
T Consensus 22 ~~g-~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 22 QSG-ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHH
Confidence 345 899999999999999999873
No 275
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.21 E-value=0.0029 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|++|||||||++.|.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998654
No 276
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.20 E-value=0.0033 Score=51.64 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.|.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999997643
No 277
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.17 E-value=0.002 Score=67.23 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
|++++|+||||+||||+++.+.+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 8999999999999999999998865
No 278
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.15 E-value=0.002 Score=64.70 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+|..++|+||||+||||++++|.+...+.++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 6899999999999999999999998765554
No 279
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.15 E-value=0.0026 Score=57.03 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.-.++|+|.+|||||||+|.|.+...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35689999999999999999988654
No 280
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.14 E-value=0.0026 Score=51.74 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.|.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 281
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.13 E-value=0.0023 Score=59.84 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=28.9
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+...++++++++|++|+||||++..|+..+.+..+
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 34557899999999999999999999988765433
No 282
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.13 E-value=0.0034 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 283
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.11 E-value=0.0027 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
...+.+|+||||+||||++.+|.-.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3569999999999999999988543
No 284
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.08 E-value=0.0039 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.|.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 285
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.08 E-value=0.0036 Score=57.80 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCcc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g 162 (346)
+|++++++|++|+||||++..|++.+.+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~ 127 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999998765433
No 286
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.07 E-value=0.0043 Score=52.12 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...++|+|++|||||||++.|.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3569999999999999999998764
No 287
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.04 E-value=0.0083 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+...++++|++|||||||++.|.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45679999999999999999998753
No 288
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.04 E-value=0.021 Score=56.08 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+...++++|.+||||||+++.|...+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 289
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.03 E-value=0.0021 Score=62.44 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.0
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+...+..++|+|+||||||||+++|.+..+
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcCCc
Confidence 345778999999999999999999988743
No 290
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.02 E-value=0.0026 Score=60.55 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhcc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
..+| +++|+||||+||||++++|..
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3456 999999999999999999975
No 291
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.02 E-value=0.0031 Score=55.51 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..+|.+++|+||||+||||++..++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999997766543
No 292
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.00 E-value=0.0031 Score=59.30 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLM 154 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~ 154 (346)
...+.+|+||||+||||++.+|.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45699999999999999999873
No 293
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.00 E-value=0.0035 Score=54.67 Aligned_cols=27 Identities=37% Similarity=0.342 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..|+.++|+||||+|||||+..|....
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 368899999999999999999998764
No 294
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.99 E-value=0.0028 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 295
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.97 E-value=0.003 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 296
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.97 E-value=0.0045 Score=50.64 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++++|++|||||||++.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 297
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.95 E-value=0.0035 Score=56.46 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++..++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999998763
No 298
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.93 E-value=0.0034 Score=56.16 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+.++|.||+|+||||++++|.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999988764
No 299
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.93 E-value=0.0041 Score=57.59 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..++|+|.+|||||||+|.|.+..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 469999999999999999998763
No 300
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.92 E-value=0.0035 Score=52.22 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+..+.|.||+|+||||+++.+...+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998765
No 301
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0035 Score=51.38 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHhhccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.++++|++|||||||++.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 302
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0041 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
....++++|++|||||||++.|.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998764
No 303
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.90 E-value=0.0035 Score=54.67 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+..++|.||+|+||||+++.+.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999987653
No 304
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.89 E-value=0.0031 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
No 305
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.89 E-value=0.0038 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++++|++|||||||++.|.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 306
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.88 E-value=0.0069 Score=59.25 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=42.1
Q ss_pred ccCCCCeeEEEeCCCh-HHHHHHH--HHcCC-eEEEeccC-cc---------------------CCCCCeEEEEcCCCCC
Q 019061 92 KGSSSDDCLWFLEVDT-PYVREQK--KVVGA-EVVAWSKG-VI---------------------GNVEKPVVITGPSGVG 145 (346)
Q Consensus 92 ~~~~~~~~i~~~k~D~-~~~~~~~--~~~g~-~v~~~~~~-~~---------------------~~~g~~~~l~GpsG~G 145 (346)
...+.+.+++.||+|. +...... ...|. ..+.+|+. .. ......++++|.+|+|
T Consensus 128 ~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vG 207 (456)
T 4dcu_A 128 YRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVG 207 (456)
T ss_dssp TTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSS
T ss_pred HHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCC
Confidence 4468889999999994 2111111 12232 34555543 10 0123568999999999
Q ss_pred hHHHHHhhccccCCCccceeeecCCcc
Q 019061 146 KGTLISMLMKEFPSMFGFSVSHTTRAP 172 (346)
Q Consensus 146 KsTl~~~L~~~~~~~~g~~i~~ttr~~ 172 (346)
||||++.|.+......+ ....||+..
T Consensus 208 KSslin~l~~~~~~~~~-~~~gtt~~~ 233 (456)
T 4dcu_A 208 KSSLVNAMLGEERVIVS-NVAGTTRDA 233 (456)
T ss_dssp HHHHHHHHHTSTTEEEC-C------CT
T ss_pred HHHHHHHHhCCCccccC-CCCCeEEEE
Confidence 99999999875322222 333455543
No 307
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.88 E-value=0.0037 Score=58.29 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+| +.+|+||||||||||+.+|.-.+
T Consensus 24 ~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 24 DR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 45 99999999999999999997543
No 308
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.87 E-value=0.0045 Score=57.34 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...++++|.+|||||||+|.|.+..
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999998864
No 309
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.85 E-value=0.0036 Score=51.02 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++++|++|||||||++.|.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998653
No 310
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.85 E-value=0.0035 Score=56.77 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..++|+|++|||||||+|+|.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998864
No 311
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.84 E-value=0.0031 Score=59.37 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=25.6
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..++.+++++|++|+||||+++.|.+.+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999987654
No 312
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.83 E-value=0.0037 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.|.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 313
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.82 E-value=0.0034 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 314
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.81 E-value=0.0039 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHhhccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.++++|++|||||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 315
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.80 E-value=0.0019 Score=68.01 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=26.6
Q ss_pred cCccCCCCCeEEEEcCCCCChHHHHHh-hcccc
Q 019061 126 KGVIGNVEKPVVITGPSGVGKGTLISM-LMKEF 157 (346)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKsTl~~~-L~~~~ 157 (346)
.++.+..|++++|+|+||||||||++. |.+.+
T Consensus 516 vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 516 LDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 335577999999999999999999997 66543
No 316
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.80 E-value=0.0045 Score=59.71 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLM 154 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~ 154 (346)
+.+|++++|+||||+|||||+..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3489999999999999999999654
No 317
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.80 E-value=0.0039 Score=51.72 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++++|++|||||||++.|.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998753
No 318
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.80 E-value=0.004 Score=55.24 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+|..++|.|+.||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
No 319
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.80 E-value=0.0045 Score=57.01 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..++.+.|.||+|+||||++++|.....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4678899999999999999999998754
No 320
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.79 E-value=0.0039 Score=50.91 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHhhccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.++++|++|||||||++.|.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 321
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.75 E-value=0.0041 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..-.++++|++|||||||++.|.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999875
No 322
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.75 E-value=0.0081 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++++|++|||||||++.|.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 323
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.73 E-value=0.004 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..++++|++|||||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 324
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.73 E-value=0.0034 Score=62.66 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=27.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
..+|.+++|+||||+|||||++.+++...+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999999987654
No 325
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.72 E-value=0.0043 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998763
No 326
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.72 E-value=0.0038 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
....++|+|++|||||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999875
No 327
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.71 E-value=0.0075 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++++|++|||||||++.|.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 328
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.71 E-value=0.0066 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|++|||||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 329
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.70 E-value=0.0032 Score=67.04 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=24.1
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLM 154 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~ 154 (346)
+.+..|++++|+|+||||||||++.|+
T Consensus 663 l~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 663 VSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 456789999999999999999999864
No 330
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.69 E-value=0.0045 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997653
No 331
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.68 E-value=0.0053 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++++|++|||||||++.|.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 358999999999999999998653
No 332
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.67 E-value=0.0046 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 333
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.67 E-value=0.0048 Score=57.64 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.9
Q ss_pred EEEEcCCCCChHHHHHhhcc-ccCCCcc
Q 019061 136 VVITGPSGVGKGTLISMLMK-EFPSMFG 162 (346)
Q Consensus 136 ~~l~GpsG~GKsTl~~~L~~-~~~~~~g 162 (346)
++|.||+|+||||+++.|++ ...+..|
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g 66 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVY 66 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999 4555444
No 334
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.67 E-value=0.0053 Score=52.62 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..+.|.||+|+||||++++|....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998765
No 335
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.67 E-value=0.0039 Score=51.99 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
+.-.++++|++|||||||++.|.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999853
No 336
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.66 E-value=0.0046 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 337
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.66 E-value=0.0054 Score=55.90 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++.+.|.||+|+||||+++++.....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999988764
No 338
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.66 E-value=0.0042 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++++|++|||||||++.|.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998764
No 339
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.66 E-value=0.0047 Score=50.70 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCChHHHHHhhccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.-.++++|++|||||||++.|.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999764
No 340
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.62 E-value=0.0066 Score=61.60 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=27.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccCCCc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMF 161 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~ 161 (346)
..|+.++|+||||+||||++++|.+..++..
T Consensus 58 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 3678999999999999999999999887654
No 341
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.61 E-value=0.0049 Score=52.08 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 342
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0074 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 368999999999999999998764
No 343
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.60 E-value=0.0042 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
...++++|++|||||||++++.+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 344
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.59 E-value=0.0055 Score=52.40 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999754
No 345
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.58 E-value=0.0048 Score=50.98 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++++|++|||||||++.|.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 346
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.56 E-value=0.01 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998653
No 347
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.54 E-value=0.0036 Score=62.16 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.8
Q ss_pred eEEEEcCCCCChHHHHHhhccccC
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
-++|+||||+|||||+++|.+...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999998764
No 348
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.53 E-value=0.0057 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988765
No 349
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0056 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++++|++|||||||++.|.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998754
No 350
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.53 E-value=0.0093 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998653
No 351
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.005 Score=57.57 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.2
Q ss_pred EEEEcCCCCChHHHHHhhccccC
Q 019061 136 VVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 136 ~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++|.||+|+||||+++++++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999998754
No 352
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.52 E-value=0.0045 Score=51.53 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+..+.|.||+|+||||+++.+...+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987653
No 353
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.51 E-value=0.0056 Score=51.50 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChHHHHHhhccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.-.++++|++|||||||++.|.+.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999865
No 354
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0074 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999998653
No 355
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0088 Score=50.25 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999997653
No 356
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.49 E-value=0.003 Score=67.04 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=24.2
Q ss_pred ccCCCCCeEEEEcCCCCChHHHHHhhc
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLISMLM 154 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~~~L~ 154 (346)
+.+..|++++|+|+||||||||++.|+
T Consensus 645 l~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 645 VKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 456799999999999999999999864
No 357
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.49 E-value=0.011 Score=50.31 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.-.++|+|++|||||||++.|.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998653
No 358
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.48 E-value=0.0058 Score=52.10 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHhhccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.++|+|.+|||||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 359
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.48 E-value=0.0064 Score=55.42 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..++|+|++|||||||+|+|.+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999998853
No 360
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.48 E-value=0.0052 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
....++|+|++|||||||++.|.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34679999999999999999998864
No 361
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.48 E-value=0.012 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.46 E-value=0.006 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..++|+|++|||||||++.|.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999998653
No 363
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.46 E-value=0.0097 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998653
No 364
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.45 E-value=0.0062 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...++++|++|||||||++.+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999998753
No 365
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.45 E-value=0.0067 Score=50.83 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.-.++++|++|||||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998754
No 366
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.45 E-value=0.0056 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 367
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.44 E-value=0.0062 Score=57.95 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHhhccccC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+.++|+|++|||||||+|.|.+...
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC--
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCc
Confidence 3599999999999999999998653
No 368
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.41 E-value=0.0078 Score=54.44 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+..+.|.||+|+||||++++++....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 567899999999999999999988764
No 369
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.40 E-value=0.0064 Score=51.68 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999997653
No 370
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.39 E-value=0.007 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.-.++|+|++|||||||++.|.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998764
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.39 E-value=0.008 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.678 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...++|+|++|+|||||++.|.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 372
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.39 E-value=0.0061 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++++|++|||||||++.|.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 373
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.38 E-value=0.0066 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 374
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.38 E-value=0.0073 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
-.++|+|++|||||||++.|.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccc
Confidence 35899999999999999999876543
No 375
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.36 E-value=0.007 Score=54.56 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.++|+|.+|||||||+|.|.+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999998763
No 376
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.36 E-value=0.0074 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|++|||||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 377
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.36 E-value=0.0069 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++++|++|||||||++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999754
No 378
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.35 E-value=0.0071 Score=52.37 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...++|+|++|||||||++.|....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 379
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.34 E-value=0.007 Score=51.57 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 380
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.34 E-value=0.0073 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|++|||||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 381
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.34 E-value=0.0074 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.624 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
....++|+|++|||||||++.|.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999875
No 382
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.33 E-value=0.0079 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
....++|+|++|||||||++.|.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998753
No 383
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.32 E-value=0.0084 Score=56.63 Aligned_cols=23 Identities=13% Similarity=0.439 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..++|+|++|||||||+|+|.+.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999984
No 384
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.32 E-value=0.0085 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++++|.+|+|||||+|.|.+..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 385
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.29 E-value=0.0076 Score=57.11 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=22.8
Q ss_pred CCCe--EEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKP--VVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~--~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+|+. ++|+|++|+||||++++|++.+.
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4545 99999999999999999988654
No 386
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.28 E-value=0.0073 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..|+-++|.|+||+||||++-.|...
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 46889999999999999999988763
No 387
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.007 Score=51.15 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999999874
No 388
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.25 E-value=0.0074 Score=53.97 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...++|+|++|||||||++.|.+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998753
No 389
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.25 E-value=0.0091 Score=56.41 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
....++++|++|||||||++.|.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998865
No 390
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.25 E-value=0.008 Score=54.49 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|.+|+|||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987653
No 391
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.24 E-value=0.0083 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+..++|.||+|+||||+++.+.....
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999987653
No 392
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.23 E-value=0.0069 Score=56.08 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+..+.|.||+|+||||+++.+....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999998865
No 393
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.23 E-value=0.0077 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..++|+|++|||||||++.|...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999854
No 394
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.23 E-value=0.0091 Score=50.77 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+.-.++|+|.+|||||||++.+.+...
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445799999999999999999887654
No 395
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.22 E-value=0.006 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++++|++|||||||++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 396
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.22 E-value=0.0073 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.-.++|+|++|||||||++.|.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3468999999999999999998754
No 397
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.21 E-value=0.0082 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.-.++++|++|+|||||++.+....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998653
No 398
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.21 E-value=0.0081 Score=50.68 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 399
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.0083 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHhhccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.-.++|+|++|||||||++.|.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999875
No 400
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.20 E-value=0.01 Score=48.31 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+..+.|.||+|+|||++++.|....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999997754
No 401
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.20 E-value=0.0083 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46899999999999999999765
No 402
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.0067 Score=52.10 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
....++++|++|||||||++.|.+..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 403
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.19 E-value=0.01 Score=52.80 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++.+.|.||+|+||||+++.+.....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457799999999999999999988653
No 404
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.19 E-value=0.008 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 405
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.16 E-value=0.012 Score=55.96 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+..++|+|.+|||||||+|+|.+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4578999999999999999998753
No 406
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.15 E-value=0.0085 Score=56.87 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+|.++.|.||+|+|||||+..++....
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999987654
No 407
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.14 E-value=0.012 Score=54.25 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
++++++++|++|+||||++..|+..+..
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3889999999999999999999987654
No 408
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.0085 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
+.-.++++|++|||||||++.|.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999864
No 409
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.14 E-value=0.033 Score=51.76 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..|+-+.|.|+||+||||++-.|...
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 36888999999999999999988663
No 410
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.13 E-value=0.0088 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 411
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.12 E-value=0.0066 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=9.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 412
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.12 E-value=0.0088 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHhhccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.-.++|+|++|||||||++.|.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999864
No 413
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.12 E-value=0.014 Score=56.59 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~ 160 (346)
++++++++|++|+||||++..|+..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68899999999999999999999887654
No 414
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.0082 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999765
No 415
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.10 E-value=0.0075 Score=50.48 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+.-.++++|++|||||||++.|.+..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998753
No 416
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.10 E-value=0.011 Score=56.79 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
...+..++|+|+||||||||+|+|.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 346778999999999999999999876
No 417
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.06 E-value=0.0079 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 418
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.05 E-value=0.011 Score=48.10 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+..+.|.||+|+|||++++.|....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35679999999999999999998754
No 419
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.05 E-value=0.0096 Score=50.58 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
+.-.++++|++|||||||++.+...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4456999999999999999999764
No 420
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.04 E-value=0.0089 Score=54.64 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCChHHHHHhhccccCC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
..+.|.||+|+||||++++|......
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 58999999999999999999987643
No 421
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.03 E-value=0.0095 Score=55.73 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+..++|.||+|+||||+++.+.+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999988653
No 422
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.01 E-value=0.011 Score=53.30 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..++|+|++|||||||+|.|.+..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 458999999999999999998753
No 423
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.01 E-value=0.0098 Score=51.12 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...++|+|++|||||||++.|.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999998754
No 424
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.01 E-value=0.011 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998653
No 425
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.99 E-value=0.01 Score=54.47 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++.+.|.||+|+|||++++.|+..+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456788889999999999999998763
No 426
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.99 E-value=0.01 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
...++|+|.+|||||||++.|+...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998764
No 427
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.98 E-value=0.011 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..-.++++|++|||||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999865
No 428
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.97 E-value=0.0079 Score=58.56 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
++.+++++||+||||||++..|+..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999876643
No 429
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.02 Score=49.77 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|++|||||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 430
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.95 E-value=0.011 Score=51.58 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|.+|||||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 431
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.95 E-value=0.01 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++++|++|||||||++.|.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 432
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.94 E-value=0.0098 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 433
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.93 E-value=0.0088 Score=58.50 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-..++|+|.+|||||||+|.|.+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3579999999999999999998864
No 434
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.92 E-value=0.0093 Score=56.59 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|++|+|||||++.|.+..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 36999999999999999987653
No 435
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.92 E-value=0.012 Score=55.30 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.7
Q ss_pred eEEEEcCCCCChHHHHHhhccccCC
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.++|.||+|+||||+++.+.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999887654
No 436
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.91 E-value=0.013 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.-.++|+|.+|+|||||++.|.+..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999998864
No 437
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.89 E-value=0.011 Score=53.99 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+..+.|.||+|+|||++++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999887765
No 438
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.85 E-value=0.013 Score=61.50 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=26.3
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
...++.++|+||||+||||++++|++..+.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 457889999999999999999999987653
No 439
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.82 E-value=0.01 Score=49.86 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCChHHHHHhhccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.-.++++|++|||||||++.|...
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999999654
No 440
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.82 E-value=0.012 Score=55.81 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLM 154 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~ 154 (346)
.+.+.+|+|+||+||||++.+|.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999885
No 441
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=94.79 E-value=0.02 Score=56.36 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc--cccCCeeEEeeC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--MEKDGVHYHFTE 186 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~--~~~~g~~y~f~s 186 (346)
.+-.++|+|++|||||||+|.|.+....... ....||+.... ...++..+.+.+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~~g~~l~liD 287 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIHDKTMFRLTD 287 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEECCeEEEEEE
Confidence 3445999999999999999999886422122 34456665432 233454444443
No 442
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.012 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.422 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++++|++|||||||++.|.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999865
No 443
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.75 E-value=0.015 Score=56.45 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCChHHHHHhhccccC
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..++|+|.+|||||||+|.|.+...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~ 28 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI 28 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4689999999999999999988643
No 444
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.74 E-value=0.014 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..+.|.||+|+||||+++.+...+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999998754
No 445
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.72 E-value=0.013 Score=53.82 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.-..++++|.+|||||||+|+|.+..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 34579999999999999999998864
No 446
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.72 E-value=0.014 Score=55.05 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+..+.|.||+|+|||+++++|...+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999988763
No 447
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.71 E-value=0.014 Score=53.01 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|.+|||||||+|.|.+..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998864
No 448
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.71 E-value=0.012 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..++++|++|||||||++.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998753
No 449
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.70 E-value=0.0091 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCChHHHHHhhcc
Q 019061 134 KPVVITGPSGVGKGTLISMLMK 155 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~ 155 (346)
-.++|+|++|||||||++.+..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999543
No 450
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.66 E-value=0.013 Score=53.19 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+..+.|.||+|+|||++++.+...+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988764
No 451
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.66 E-value=0.011 Score=62.87 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.5
Q ss_pred ccCCCCCeEEEEcCCCCChHHHH
Q 019061 128 VIGNVEKPVVITGPSGVGKGTLI 150 (346)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKsTl~ 150 (346)
+.+..|++++|+||||||||||+
T Consensus 605 l~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 605 VEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp EEEESSSEEEEECSTTSSHHHHH
T ss_pred eEEcCCcEEEEEccCCCChhhhH
Confidence 34568999999999999999997
No 452
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.65 E-value=0.012 Score=53.43 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
....++++|.+|||||||+|+|.+..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 34579999999999999999998764
No 453
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.64 E-value=0.012 Score=58.60 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+.+++|+|.|||||||+.++|...+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999875
No 454
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.63 E-value=0.017 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++.+.|.||+|+|||+++++++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 45789999999999999999999875
No 455
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.58 E-value=0.014 Score=49.94 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35899999999999999999765
No 456
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.55 E-value=0.014 Score=54.67 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++.+.|.||+|+|||++++.+...+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999988764
No 457
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.54 E-value=0.017 Score=56.66 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=25.3
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+|+.++|+||||+|||||++.|.....
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 45899999999999999999999977643
No 458
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.53 E-value=0.014 Score=55.52 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|+||||||||+|+|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998764
No 459
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.52 E-value=0.0074 Score=51.30 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=4.8
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|||||||++.|.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 460
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.48 E-value=0.015 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
+.-.++++|++|||||||++.+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999988754
No 461
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.47 E-value=0.016 Score=50.18 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
..-.++|+|++|||||||++.|.+.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456999999999999999999765
No 462
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.39 E-value=0.022 Score=54.63 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.5
Q ss_pred cCCCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 129 IGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+.+|+.++|+||+|+|||||++.|....
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 45689999999999999999999987753
No 463
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.39 E-value=0.016 Score=49.69 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHhhccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
-.++|+|++|+|||||++.+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 464
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.38 E-value=0.0086 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
-.++|+|++|||||||++.|.+..
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 465
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.37 E-value=0.021 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCChHHHHHhhcccc
Q 019061 134 KPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 134 ~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
..++|+|++|+|||||+|.|.+..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 568999999999999999999864
No 466
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.36 E-value=0.016 Score=52.20 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
....+.|.||+|+|||++++++....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 44689999999999999999998864
No 467
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.35 E-value=0.02 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.604 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+..++|+|++|||||||++.+.+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3568999999999999999987764
No 468
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.32 E-value=0.02 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+|+++.|.||+|+|||||+..++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998887653
No 469
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.29 E-value=0.022 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
++.+.|.||+|+|||+|+.+|....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998764
No 470
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.27 E-value=0.018 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCChHHHHHhhcccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+..++|.||+|+|||||+++|....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998764
No 471
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.23 E-value=0.0095 Score=53.39 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++.+.|.||+|+||||++++|.....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34588999999999999999988653
No 472
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.18 E-value=0.024 Score=52.60 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+-+.|.||+|+|||+++++++....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 456799999999999999999988653
No 473
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.18 E-value=0.025 Score=48.28 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
+|++.++.||.|+||||++-.++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998555443
No 474
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.18 E-value=0.022 Score=55.33 Aligned_cols=37 Identities=35% Similarity=0.517 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP 172 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~ 172 (346)
.++|+|.++||||||+|.|.+....... ..+.+|+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~ 39 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDP 39 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccce
Confidence 6899999999999999999876432222 334455543
No 475
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.16 E-value=0.018 Score=53.88 Aligned_cols=26 Identities=15% Similarity=0.447 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+..+.|.||+|+||||+++.+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 476
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.16 E-value=0.021 Score=49.92 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+...++|.||+|+||||++.+|+..+
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998875
No 477
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.14 E-value=0.023 Score=53.65 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
+..+++|+|++|+||||+++.|...+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997664
No 478
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.14 E-value=0.02 Score=55.03 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.++|+|.++||||||+|+|.+..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998764
No 479
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.08 E-value=0.023 Score=53.73 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.+..+.|.||+|+||||+++.|...+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999988763
No 480
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.08 E-value=0.025 Score=53.29 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
..+.+.|.||+|+||||++++|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999988753
No 481
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.07 E-value=0.024 Score=54.09 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.+.-++++||+|+||||+++.|+.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4667899999999999999999876543
No 482
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.05 E-value=0.017 Score=56.72 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCCCccceeeecCCcccc--cccCCeeEEeeC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--MEKDGVHYHFTE 186 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~~~g~~i~~ttr~~~~--~~~~g~~y~f~s 186 (346)
.+-.++|+|++|||||||+|.|.+....... .+..||+.... ...++..+.+.+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~~g~~v~liD 278 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVVGGIPVQVLD 278 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEETTEEEEECC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEECCEEEEEEE
Confidence 3446999999999999999999886432122 23345554322 223454444433
No 483
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.04 E-value=0.026 Score=52.99 Aligned_cols=27 Identities=19% Similarity=-0.007 Sum_probs=24.2
Q ss_pred CCCCCeEEEEcCCCCChHHHHHhhccc
Q 019061 130 GNVEKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 130 ~~~g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
...|.++.|.||+|+||||++..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999988765
No 484
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.00 E-value=0.019 Score=55.93 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+.+++++|++|+||||+++.|+..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988653
No 485
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.00 E-value=0.028 Score=50.25 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
+..+.|.||+|+|||++++.|.....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 46899999999999999999987654
No 486
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.028 Score=54.62 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++=+.|.||+|+|||+++++++....
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998764
No 487
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.99 E-value=0.025 Score=55.67 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++-+.|+||||+||||+++++.+...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35589999999999999999998754
No 488
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.90 E-value=0.027 Score=52.15 Aligned_cols=26 Identities=31% Similarity=0.647 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCCChHHHHHhhccccC
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
...+.|.||+|+||||+++.+.....
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987754
No 489
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.88 E-value=0.023 Score=55.39 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 490
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.88 E-value=0.03 Score=54.52 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++-+.|.||+|+|||++++++++...
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998764
No 491
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.86 E-value=0.032 Score=49.17 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHhhc
Q 019061 131 NVEKPVVITGPSGVGKGTLISMLM 154 (346)
Q Consensus 131 ~~g~~~~l~GpsG~GKsTl~~~L~ 154 (346)
..|+.++++||+||||||++..+.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 468999999999999999877654
No 492
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.83 E-value=0.022 Score=52.81 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHhhcccc
Q 019061 135 PVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 135 ~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+.|.||+|+||||+++.+...+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998875
No 493
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.84 E-value=0.011 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCChHHHHHhhccc
Q 019061 133 EKPVVITGPSGVGKGTLISMLMKE 156 (346)
Q Consensus 133 g~~~~l~GpsG~GKsTl~~~L~~~ 156 (346)
.-.++++|++|||||||++.+...
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 456899999999999999999754
No 494
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.033 Score=54.23 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
..+=+.|.||+|+|||+++++++.....
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4577999999999999999999987643
No 495
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.67 E-value=0.034 Score=54.28 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
..+-+.|.||+|+||||++++|+..+..
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3456999999999999999999988754
No 496
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.64 E-value=0.032 Score=52.37 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
.+..+.|.||+|+||||+++.+....
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 497
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.63 E-value=0.029 Score=52.96 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~ 158 (346)
.++-+.|.||+|+|||+++++++....
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 446689999999999999999988763
No 498
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.57 E-value=0.028 Score=52.88 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCChHHHHHhhcccc
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~ 157 (346)
....++++|.+|||||||+|+|.+..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998863
No 499
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.49 E-value=0.033 Score=53.60 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.++=+.|.||+|+|||++++++++....
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 4566899999999999999999987643
No 500
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.47 E-value=0.023 Score=52.67 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCChHHHHHhhccccCC
Q 019061 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (346)
Q Consensus 132 ~g~~~~l~GpsG~GKsTl~~~L~~~~~~ 159 (346)
.+..+.|.||+|+|||++++.|......
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4578999999999999999999887643
Done!