BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019063
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 132/219 (60%), Positives = 158/219 (72%), Gaps = 7/219 (3%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
VP S+DWR+KGAVT +KDQGQCGSCWAFS + AVEGI QI KL+ LSEQ+LVDC TD
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDE 249
N GC+GGLMD AFE+I + G+ TEA+YPY +GTCD KE A A +I +E++P+ DE
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 250 QALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYW 309
ALL+AV+NQPVSV +DA G F FY GV CG DHGVA+VG+GT + G KYW
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTID--GTKYW 179
Query: 310 LIKNSWGETWGESGYIRILR----DAGLCGIATAASYPV 344
+KNSWG WGE GYIR+ R GLCGIA ASYP+
Sbjct: 180 TVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 271 bits (693), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 131/225 (58%), Positives = 159/225 (70%), Gaps = 10/225 (4%)
Query: 128 VTDVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCS 187
V+D+P S+DWR+KGAVT +KDQG+CGSCWAFS V +VEGI I G L+ LSEQ+L+DC
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 188 T-DNHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQK---EKAVAATISKYED 243
T DN GC GGLMD AFEYI N GL TEA YPYR GTC+ + V I ++D
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQD 120
Query: 244 LPKGDEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEE 303
+P E+ L +AV+NQPVSV V+ASG+AF FY GV +CG DHGVAVVG+G AE+
Sbjct: 121 VPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAED- 179
Query: 304 NGAKYWLIKNSWGETWGESGYIRILRDA----GLCGIATAASYPV 344
G YW +KNSWG +WGE GYIR+ +D+ GLCGIA ASYPV
Sbjct: 180 -GKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 153/219 (69%), Gaps = 8/219 (3%)
Query: 130 DVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD 189
D+P SIDWRE GAV +K+QG CGSCWAFS VAAVEGI QI G LI LSEQQLVDC+T
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA 61
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDE 249
NHGC GG M+ AF++I+ N G+ +E YPYR ++G C N A +I YE++P +E
Sbjct: 62 NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGIC-NSTVNAPVVSIDSYENVPSHNE 120
Query: 250 QALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYW 309
Q+L +AV+NQPVSV +DA+GR F Y+SG+ C + +H + VVG+GT EN +W
Sbjct: 121 QSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGT---ENDKDFW 177
Query: 310 LIKNSWGETWGESGYIRILRDA----GLCGIATAASYPV 344
++KNSWG+ WGESGYIR R+ G CGI ASYPV
Sbjct: 178 IVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/318 (44%), Positives = 193/318 (60%), Gaps = 18/318 (5%)
Query: 35 EPSIVEKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKE---GNRTYKLGTNEF 91
+P++ W +G+ YK++ E+A+R I+++NL+++ N E G +Y LG N
Sbjct: 5 DPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHL 64
Query: 92 SDLTNEEFRALYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKDQGQ 151
D+T+EE +L + T+K +P S+DWREKG VT +K QG
Sbjct: 65 GDMTSEEVMSLMSSLRVPSQWQRNI-----TYKSNPNRILPDSVDWREKGCVTEVKYQGS 119
Query: 152 CGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD---NHGCSGGLMDKAFEYIIEN 208
CG+ WAFSAV A+E ++ GKL+ LS Q LVDCST+ N GC+GG M AF+YII+N
Sbjct: 120 CGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDN 179
Query: 209 KGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVSNQ-PVSVCVDA 267
KG+ ++A YPY+ + C K AAT SKY +LP G E L +AV+N+ PVSV VDA
Sbjct: 180 KGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDA 238
Query: 268 SGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIR 326
+F Y+SGV C N +HGV VVG+G + NG +YWL+KNSWG +GE GYIR
Sbjct: 239 RHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNGKEYWLVKNSWGHNFGEEGYIR 295
Query: 327 ILRDAG-LCGIATAASYP 343
+ R+ G CGIA+ SYP
Sbjct: 296 MARNKGNHCGIASFPSYP 313
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 250 bits (639), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 179/310 (57%), Gaps = 12/310 (3%)
Query: 38 IVEKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNE 97
+++ WM H + Y++ EK R IFK NL YI++ NK+ N +Y LG NEF+DL+N+
Sbjct: 18 LIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-NNSYWLGLNEFADLSND 76
Query: 98 EFRALYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKDQGQCGSCWA 157
EF Y G F +++ ++P ++DWR+KGAVT ++ QG CGSCWA
Sbjct: 77 EFNEKYVG---SLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWA 133
Query: 158 FSAVAAVEGITQITRGKLIELSEQQLVDCSTDNHGCSGGLMDKAFEYIIENKGLATEADY 217
FSAVA VEGI +I GKL+ELSEQ+LVDC +HGC GG A EY+ +N G+ + Y
Sbjct: 134 FSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKY 192
Query: 218 PYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVSNQPVSVCVDASGRAFHFYKS 277
PY+ ++GTC ++ S + +E LL A++ QPVSV V++ GR F YK
Sbjct: 193 PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKG 252
Query: 278 GVLNADCGNNCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILR----DAGL 333
G+ CG D V V + G Y LIKNSWG WGE GYIRI R G+
Sbjct: 253 GIFEGPCGTKVDGAVTAV---GYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGV 309
Query: 334 CGIATAASYP 343
CG+ ++ YP
Sbjct: 310 CGLYKSSYYP 319
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 184/316 (58%), Gaps = 25/316 (7%)
Query: 38 IVEKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNE 97
+++ E WM +H + YK+ EK R IFK NL+YI++ NK+ N +Y LG N F+D++N+
Sbjct: 62 LIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NNSYWLGLNVFADMSND 120
Query: 98 EFRALYTGYNXXXXXXXXXXXXXXTFKYQNV-----TDVPTSIDWREKGAVTHIKDQGQC 152
EF+ YTG Y+ V ++P +DWR+KGAVT +K+QG C
Sbjct: 121 EFKEKYTG-------SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSC 173
Query: 153 GSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNHGCSGGLMDKAFEYIIENKGLA 212
GS WAFSAV+ +E I +I G L E SEQ+L+DC ++GC+GG A + ++ G+
Sbjct: 174 GSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIH 232
Query: 213 TEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVSNQPVSVCVDASGRAF 272
YPY + C ++++ AA + +E ALL +++NQPVSV ++A+G+ F
Sbjct: 233 YRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF 292
Query: 273 HFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDA- 331
Y+ G+ CGN DH VA VG+ G Y LI+NSWG WGE+GYIRI R
Sbjct: 293 QLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYILIRNSWGTGWGENGYIRIKRGTG 345
Query: 332 ---GLCGIATAASYPV 344
G+CG+ T++ YPV
Sbjct: 346 NSYGVCGLYTSSFYPV 361
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/311 (43%), Positives = 188/311 (60%), Gaps = 19/311 (6%)
Query: 44 QWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKAN---KEGNRTYKLGTNEFSDLTNEEFR 100
+W A H R Y E+ R ++++N++ IE N +EG ++ + N F D+T+EEFR
Sbjct: 10 KWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFR 68
Query: 101 ALYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKDQGQCGSCWAFSA 160
+ G F+ + P S+DWREKG VT +K+QGQCGS WAFSA
Sbjct: 69 QVMNGLQNRKPRKGK------VFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSSWAFSA 122
Query: 161 VAAVEGITQITRGKLIELSEQQLVDCSTD--NHGCSGGLMDKAFEYIIENKGLATEADYP 218
A+EG G+LI LSEQ LVDCS N GC+GGLMD AF+Y+ +N GL +E YP
Sbjct: 123 TGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYP 182
Query: 219 YRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVSN-QPVSVCVDASGRAFHFYKS 277
Y E +C + +V A + + D+PK E+AL++AV+ P+SV +DA +F FYK
Sbjct: 183 YEATEESCKYNPKYSV-ANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKE 240
Query: 278 GV-LNADCGN-NCDHGVAVVGFG-TAEEENGAKYWLIKNSWGETWGESGYIRILRD-AGL 333
G+ DC + + DHGV VVG+G + E +G KYWL+KNSWGE WG GY+++ +D
Sbjct: 241 GIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNH 300
Query: 334 CGIATAASYPV 344
CGIA+AASYP
Sbjct: 301 CGIASAASYPT 311
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 188/311 (60%), Gaps = 19/311 (6%)
Query: 44 QWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKAN---KEGNRTYKLGTNEFSDLTNEEFR 100
+W A H R Y E+ R ++++N++ IE N +EG ++ + N F D+T+EEFR
Sbjct: 14 KWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFR 72
Query: 101 ALYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKDQGQCGSCWAFSA 160
+ G+ F+ + P S+DWREKG VT +K+QGQCGS WAFSA
Sbjct: 73 QVMNGFQNRKPRKGK------VFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSXWAFSA 126
Query: 161 VAAVEGITQITRGKLIELSEQQLVDCS--TDNHGCSGGLMDKAFEYIIENKGLATEADYP 218
A+EG G+LI LSEQ LVDCS N GC+GGLMD AF+Y+ +N GL +E YP
Sbjct: 127 TGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYP 186
Query: 219 YRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVSN-QPVSVCVDASGRAFHFYKS 277
Y E +C + +V A + + D+PK E+AL++AV+ P+SV +DA +F FYK
Sbjct: 187 YEATEESCKYNPKYSV-ANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKE 244
Query: 278 GV-LNADCGN-NCDHGVAVVGFG-TAEEENGAKYWLIKNSWGETWGESGYIRILRD-AGL 333
G+ DC + + DHGV VVG+G + E + KYWL+KNSWGE WG GY+++ +D
Sbjct: 245 GIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH 304
Query: 334 CGIATAASYPV 344
CGIA+AASYP
Sbjct: 305 CGIASAASYPT 315
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/221 (54%), Positives = 148/221 (66%), Gaps = 12/221 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDC--ST 188
+P +DWR GAV IKDQGQCGSCWAFS +AAVEGI +I G LI LSEQ+LVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 189 DNHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTC--DNQKEKAVAATISKYEDLPK 246
+ GC GG M F++II N G+ TEA+YPY EEG C D Q+EK V +I YE++P
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYV--SIDTYENVPY 118
Query: 247 GDEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGA 306
+E AL AV+ QPVSV ++A+G F Y SG+ CG DH V +VG+GT E G
Sbjct: 119 NNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGT---EGGI 175
Query: 307 KYWLIKNSWGETWGESGYIRILRD---AGLCGIATAASYPV 344
YW++KNSWG TWGE GY+RI R+ G CGIA ASYPV
Sbjct: 176 DYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 147/221 (66%), Gaps = 12/221 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDC--ST 188
+P +DWR GAV IKDQGQCGS WAFS +AAVEGI +I G LI LSEQ+LVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 189 DNHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTC--DNQKEKAVAATISKYEDLPK 246
+ GC GG M F++II N G+ TEA+YPY EEG C D Q+EK V +I YE++P
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYV--SIDTYENVPY 118
Query: 247 GDEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGA 306
+E AL AV+ QPVSV ++A+G F Y SG+ CG DH V +VG+GT E G
Sbjct: 119 NNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGT---EGGI 175
Query: 307 KYWLIKNSWGETWGESGYIRILRD---AGLCGIATAASYPV 344
YW++KNSWG TWGE GY+RI R+ G CGIA ASYPV
Sbjct: 176 DYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 151/217 (69%), Gaps = 9/217 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P+ +DWR KGAV IK+Q QCGSCWAFSAVAAVE I +I G+LI LSEQ+LVDC T +
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
HGC+GG M+ AF+YII N G+ T+ +YPY +G+C + + V +I+ ++ + + +E
Sbjct: 61 HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVV--SINGFQRVTRNNES 118
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
AL AV++QPVSV V+A+G F Y SG+ CG +HGV +VG+GT ++G YW+
Sbjct: 119 ALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGT---QSGKNYWI 175
Query: 311 IKNSWGETWGESGYIRILRD----AGLCGIATAASYP 343
++NSWG+ WG GYI + R+ AGLCGIA SYP
Sbjct: 176 VRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP 212
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 234 bits (596), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 148/221 (66%), Gaps = 12/221 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDC--ST 188
+P+ +DWR GAV IK QG+CG CWAFSA+A VEGI +I G LI LSEQ+L+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 189 DNHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTC--DNQKEKAVAATISKYEDLPK 246
+ GC+GG + F++II N G+ TE +YPY ++G C D Q EK V TI YE++P
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYV--TIDTYENVPY 118
Query: 247 GDEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGA 306
+E AL AV+ QPVSV +DA+G AF Y SG+ CG DH V +VG+GT E G
Sbjct: 119 NNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGT---EGGI 175
Query: 307 KYWLIKNSWGETWGESGYIRILRD---AGLCGIATAASYPV 344
YW++KNSW TWGE GY+RILR+ AG CGIAT SYPV
Sbjct: 176 DYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 231 bits (589), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 144/219 (65%), Gaps = 8/219 (3%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDC--ST 188
+P+ +DWR GAV IK QG+CG WAFSA+A VEGI +IT G LI LSEQ+L+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 189 DNHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGD 248
+ GC GG + F++II + G+ TE +YPY ++G CD + TI YE++P +
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 249 EQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKY 308
E AL AV+ QPVSV +DA+G AF Y SG+ CG DH + +VG+GT E G Y
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGT---EGGVDY 177
Query: 309 WLIKNSWGETWGESGYIRILRD---AGLCGIATAASYPV 344
W++KNSW TWGE GY+RILR+ AG CGIAT SYPV
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 142/217 (65%), Gaps = 12/217 (5%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P SIDWREKGAVT +K+Q CGSCWAFS VA +EGI +I G+LI LSEQ+L+DC +H
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQA 251
GC GG + +Y+++N G+ TE +YPY ++G C + +K I+ Y+ +P DE +
Sbjct: 62 GCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEIS 120
Query: 252 LLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWLI 311
L+QA++NQPVSV D+ GR F FYK G+ CG N DH V VG+G Y L+
Sbjct: 121 LIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT-------YLLL 173
Query: 312 KNSWGETWGESGYIRILRDA----GLCGIATAASYPV 344
KNSWG WGE GYIRI R + G CG+ T++ +P+
Sbjct: 174 KNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/263 (46%), Positives = 164/263 (62%), Gaps = 15/263 (5%)
Query: 89 NEFSDLTNEEFRALYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKD 148
N F D+T+EEFR + G+ F+ + P S+DWREKG VT +K+
Sbjct: 3 NAFGDMTSEEFRQVMNGFQNRKPRKGK------VFQEPLFYEAPRSVDWREKGYVTPVKN 56
Query: 149 QGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCS--TDNHGCSGGLMDKAFEYII 206
QGQCGSCWAFSA A+EG G+LI LSEQ LVDCS N GC+GGLMD AF+Y+
Sbjct: 57 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 116
Query: 207 ENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVSN-QPVSVCV 265
+N GL +E YPY E +C + +V A + + D+PK E+AL++AV+ P+SV +
Sbjct: 117 DNGGLDSEESYPYEATEESCKYNPKYSV-ANDAGFVDIPK-QEKALMKAVATVGPISVAI 174
Query: 266 DASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG-TAEEENGAKYWLIKNSWGETWGES 322
DA +F FYK G+ DC + + DHGV VVG+G + E + KYWL+KNSWGE WG
Sbjct: 175 DAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMG 234
Query: 323 GYIRILRD-AGLCGIATAASYPV 344
GY+++ +D CGIA+AASYP
Sbjct: 235 GYVKMAKDRRNHCGIASAASYPT 257
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 184/319 (57%), Gaps = 15/319 (4%)
Query: 33 MHEPSIVEKH-EQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKE---GNRTYKLGT 88
++ I++ H E W H + Y +++++ R I+++NL+YI N E G TY+L
Sbjct: 1 LYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAM 60
Query: 89 NEFSDLTNEEFRALYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKD 148
N D+T+EE TG + + P S+D+R+KG VT +K+
Sbjct: 61 NHLGDMTSEEVVQKMTGL---KVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKN 117
Query: 149 QGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNHGCSGGLMDKAFEYIIEN 208
QGQCGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N GC GG M AF+Y+ +N
Sbjct: 118 QGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN 177
Query: 209 KGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVSN-QPVSVCVDA 267
+G+ +E YPY +E +C AA Y ++P+G+E+AL +AV+ PVSV +DA
Sbjct: 178 RGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDA 236
Query: 268 SGRAFHFYKSGVLNADCGN--NCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYI 325
S +F FY GV + N N +H V VG+G + G K+W+IKNSWGE WG GYI
Sbjct: 237 SLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI---QKGNKHWIIKNSWGENWGNKGYI 293
Query: 326 RILRDA-GLCGIATAASYP 343
+ R+ CGIA AS+P
Sbjct: 294 LMARNKNNACGIANLASFP 312
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 140/215 (65%), Gaps = 12/215 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P IDWR+KGAVT +K+QG+CGSCWAFS V+ VE I QI G LI LSEQQLVDC+ N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
HGC GG A++YII+N G+ TEA+YPY+ +G C K+ I Y+ +P +E
Sbjct: 61 HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAKK---VVRIDGYKGVPHCNEN 117
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
AL +AV++QP V +DAS + F YKSG+ + CG +HGV +VG+ YW+
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWK-------DYWI 170
Query: 311 IKNSWGETWGESGYIRILR--DAGLCGIATAASYP 343
++NSWG WGE GYIR+ R GLCGIA YP
Sbjct: 171 VRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYP 205
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 148/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT SKY +LP G
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 122
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 123 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 180 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 218
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 148/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT SKY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 148/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT SKY +LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 177
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 178 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 148/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT SKY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 148/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT SKY +LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 177
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 178 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 148/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT SKY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 135/215 (62%), Gaps = 12/215 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P +DWR KGAV +K+QG+CGSCWAFS V VE I QI G LI LSEQQLVDCS N
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
HGC GG D+A++YII N G+ TEA+YPY+ +G C K+ I + +P+ +E
Sbjct: 61 HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAKK---VVRIDGCKGVPQCNEN 117
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
AL AV++QP V +DAS + F YK G+ CG +HGV +VG+G YW+
Sbjct: 118 ALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGK-------DYWI 170
Query: 311 IKNSWGETWGESGYIRILR--DAGLCGIATAASYP 343
++NSWG WGE GY R+ R GLCGIA YP
Sbjct: 171 VRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYP 205
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 147/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT KY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCRKYTELPYG 119
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYP 215
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 137/215 (63%), Gaps = 12/215 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P IDWR+KGAVT +K+QG CGSCWAFS V+ VE I QI G LI LSEQ+LVDC N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
HGC GG A++YII N G+ T+A+YPY+ +G C + + +I Y +P +E
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCNEX 117
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
AL QAV+ QP +V +DAS F Y SG+ + CG +HGV +VG+ A YW+
Sbjct: 118 ALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY-------QANYWI 170
Query: 311 IKNSWGETWGESGYIRILR--DAGLCGIATAASYP 343
++NSWG WGE GYIR+LR GLCGIA YP
Sbjct: 171 VRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYP 205
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 147/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+ WAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT SKY +LP G
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 121
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 122 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 178
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 179 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 217
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 148/220 (67%), Gaps = 12/220 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAV-AATISKYEDLPK 246
N GC+GG M AF+YII+NKG+ ++A YPY+ + C Q + A AAT KY +LP
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSAYRAATCRKYTELPY 118
Query: 247 GDEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEEN 304
G E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + N
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLN 175
Query: 305 GAKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
G +YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 147/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+ WAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT SKY +LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 177
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 178 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 147/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+ WAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT SKY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 147/219 (67%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+ WAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ + C K AAT SKY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKC-QYDSKYRAATCSKYTELPYG 119
Query: 248 DEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGV-LNADCGNNCDHGVAVVGFGTAEEENG 305
E L +AV+N+ PVSV VDA +F Y+SGV C N +HGV VVG+G + NG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYP 343
+YWL+KNSWG +GE GYIR+ R+ G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 32 SMHEPSIVEKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKAN---KEGNRTYKLGT 88
S+ + E+ Q+ H ++Y +E+ R IFK N+ I + N ++G TY
Sbjct: 17 SLPKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAM 76
Query: 89 NEFSDLTNEEFRALYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKD 148
N+F D++ EEF A N + + S+DWR AV+ +KD
Sbjct: 77 NQFGDMSKEEFLAYV---NRGKAQKPKHPENLRMPYVSSKKPLAASVDWRSN-AVSEVKD 132
Query: 149 QGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD--NHGCSGGLMDKAFEYII 206
QGQCGS W+FS AVEG + RG+L LSEQ L+DCS+ N GC GG MD AF Y I
Sbjct: 133 QGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY-I 191
Query: 207 ENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVSNQ-PVSVCV 265
+ G+ +E+ YPY + C ++V T+S Y DLP GDE +L AV PV+V +
Sbjct: 192 HDYGIMSESAYPYEAQGDYCRFDSSQSV-TTLSGYYDLPSGDENSLADAVGQAGPVAVAI 250
Query: 266 DASGRAFHFYKSGVLNADCGNNCD--HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESG 323
DA+ FY G+ N D HGV VVG+G+ +NG YW++KNSWG WGESG
Sbjct: 251 DATDE-LQFYSGGLFYDQTCNQSDLNHGVLVVGYGS---DNGQDYWILKNSWGSGWGESG 306
Query: 324 YIRILRDAG-LCGIATAASYPV 344
Y R +R+ G CGIATAASYP
Sbjct: 307 YWRQVRNYGNNCGIATAASYPA 328
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 149/222 (67%), Gaps = 9/222 (4%)
Query: 130 DVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD 189
+ P S+DWREKG VT +K+QGQCGSCWAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GGLMD AF+Y+ +N GL +E YPY E +C + +V A + + D+PK
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSV-ANDTGFVDIPK- 118
Query: 248 DEQALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG-TAEEE 303
E+AL++AV+ P+SV +DA +F FYK G+ DC + + DHGV VVG+G + E
Sbjct: 119 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 178
Query: 304 NGAKYWLIKNSWGETWGESGYIRILRD-AGLCGIATAASYPV 344
+ KYWL+KNSWGE WG GY+++ +D CGIA+AASYP
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 220
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 148/220 (67%), Gaps = 9/220 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +K+QGQCGSCWAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY E +C + +V A + + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSV-ANDTGFVDIPK-QE 119
Query: 250 QALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG-TAEEENG 305
+AL++AV+ P+SV +DA +F FYK G+ DC + + DHGV VVG+G + E +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRD-AGLCGIATAASYPV 344
KYWL+KNSWGE WG GY+++ +D CGIA+AASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 219
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 148/220 (67%), Gaps = 9/220 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +K+QGQCGSCWAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY E +C + +V A + + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSV-ANDAGFVDIPK-QE 119
Query: 250 QALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG-TAEEENG 305
+AL++AV+ P+SV +DA +F FYK G+ DC + + DHGV VVG+G + E +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRD-AGLCGIATAASYPV 344
KYWL+KNSWGE WG GY+++ +D CGIA+AASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 219
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 145/220 (65%), Gaps = 8/220 (3%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWR+KG VT +K+Q QCGSCWAFSA A+EG GKL+ LSEQ LVDCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 190 -NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGD 248
N GC+GG M +AF+Y+ EN GL +E YPY + C + E +VA + + + G
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQD-TGFTVVAPGK 119
Query: 249 EQALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG-TAEEEN 304
E+AL++AV+ P+SV +DA +F FYKSG+ DC + N DHGV VVG+G +
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 305 GAKYWLIKNSWGETWGESGYIRILRDA-GLCGIATAASYP 343
+KYWL+KNSWG WG +GY++I +D CGIATAASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 136/216 (62%), Gaps = 8/216 (3%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P SIDWR KGAVT +K+QG CGS WAFS +A VEGI +I G L+ELSEQ+LVDC ++
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQA 251
GC GG + +Y+ N G+ T YPY+ ++ C + I+ Y+ +P E +
Sbjct: 62 GCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXETS 120
Query: 252 LLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWLI 311
L A++NQP+SV V+A G+ F YKSGV + CG DH V VG+GT++ +N Y +I
Sbjct: 121 FLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKN---YIII 177
Query: 312 KNSWGETWGESGYIRILRDA----GLCGIATAASYP 343
KNSWG WGE GY+R+ R + G CG+ ++ YP
Sbjct: 178 KNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 213
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 148/222 (66%), Gaps = 9/222 (4%)
Query: 130 DVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD 189
+ P S+DWREKG VT +K+QGQCGS WAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 190 --NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKG 247
N GC+GGLMD AF+Y+ +N GL +E YPY E +C + +V A + + D+PK
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSV-ANDTGFVDIPK- 118
Query: 248 DEQALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG-TAEEE 303
E+AL++AV+ P+SV +DA +F FYK G+ DC + + DHGV VVG+G + E
Sbjct: 119 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 178
Query: 304 NGAKYWLIKNSWGETWGESGYIRILRD-AGLCGIATAASYPV 344
+ KYWL+KNSWGE WG GY+++ +D CGIA+AASYP
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 220
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 147/220 (66%), Gaps = 9/220 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +K+QGQCGS WAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY E +C + +V A + + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSV-ANDTGFVDIPK-QE 119
Query: 250 QALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG-TAEEENG 305
+AL++AV+ P+SV +DA +F FYK G+ DC + + DHGV VVG+G + E +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRD-AGLCGIATAASYPV 344
KYWL+KNSWGE WG GY+++ +D CGIA+AASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 219
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 147/220 (66%), Gaps = 9/220 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +K+QGQCGS WAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY E +C + +V A + + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSV-ANDTGFVDIPK-QE 119
Query: 250 QALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG-TAEEENG 305
+AL++AV+ P+SV +DA +F FYK G+ DC + + DHGV VVG+G + E +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRD-AGLCGIATAASYPV 344
KYWL+KNSWGE WG GY+++ +D CGIA+AASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 219
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 147/220 (66%), Gaps = 9/220 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +K+QGQCGS WAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY E +C + +V A + + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSV-ANDAGFVDIPK-QE 119
Query: 250 QALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG-TAEEENG 305
+AL++AV+ P+SV +DA +F FYK G+ DC + + DHGV VVG+G + E +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRD-AGLCGIATAASYPV 344
KYWL+KNSWGE WG GY+++ +D CGIA+AASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 219
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 144/220 (65%), Gaps = 8/220 (3%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
+P S+DWR+KG VT +K+Q QCGS WAFSA A+EG GKL+ LSEQ LVDCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 190 -NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGD 248
N GC+GG M +AF+Y+ EN GL +E YPY + C + E +VA + + + G
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQD-TGFTVVAPGK 119
Query: 249 EQALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG-TAEEEN 304
E+AL++AV+ P+SV +DA +F FYKSG+ DC + N DHGV VVG+G +
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 305 GAKYWLIKNSWGETWGESGYIRILRDA-GLCGIATAASYP 343
+KYWL+KNSWG WG +GY++I +D CGIATAASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 141/217 (64%), Gaps = 8/217 (3%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
P S+D+REKG VT +K+QGQCGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
GC GG M AF+Y+ +N+G+ +E YPY +E +C AA Y ++P+G+E+
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 119
Query: 251 ALLQAVSN-QPVSVCVDASGRAFHFYKSGVLNADCGN--NCDHGVAVVGFGTAEEENGAK 307
AL +AV+ PVSV +DAS +F FY GV + N N +H V VG+G E G K
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---ESKGNK 176
Query: 308 YWLIKNSWGETWGESGYIRILRDA-GLCGIATAASYP 343
+W+IKNSWGE WG GYI++ R+ CGIA AS+P
Sbjct: 177 HWIIKNSWGENWGMGGYIKMARNKNNACGIANLASFP 213
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 174/334 (52%), Gaps = 28/334 (8%)
Query: 28 VSGRSMHEPSIVEKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKAN---KEGNRTY 84
+ G ++ + EK E + + R+Y + E+ R IF++ LE E+ N ++G +Y
Sbjct: 8 LEGSALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSY 67
Query: 85 KLGTNEFSDLTNEEFRALYTGY--------NXXXXXXXXXXXXXXTFKYQNVTDVPTSID 136
LG N F+D+T EE +A G N + +Y P S D
Sbjct: 68 TLGVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRY------PASFD 121
Query: 137 WREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIE--LSEQQLVDCSTDNHGCS 194
WR++G V+ +K+QG CGS WAFS+ A+E +I G + +SEQQLVDC + GCS
Sbjct: 122 WRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCS 181
Query: 195 GGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQ 254
GG M+ AF Y+ +N G+ +E YPY +G C + VAA +S Y L DE L
Sbjct: 182 GGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQ-VAARLSGYVYLSGPDENMLAD 240
Query: 255 AVSNQ-PVSVCVDASGRAFHFYKSGV-LNADC-GNNCDHGVAVVGFGTAEEENGAKYWLI 311
V+ + PV+V DA F Y GV N C N H V +VG+G ENG YWL+
Sbjct: 241 MVATKGPVAVAFDAD-DPFGSYSGGVYYNPTCETNKFTHAVLIVGYGN---ENGQDYWLV 296
Query: 312 KNSWGETWGESGYIRILRDA-GLCGIATAASYPV 344
KNSWG+ WG GY +I R+A CGIA AS P
Sbjct: 297 KNSWGDGWGLDGYFKIARNANNHCGIAGVASVPT 330
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P ++DWR+KGAVT ++ QG CGSCWAFSAVA VEGI +I GKL+ELSEQ+LVDC +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
HGC GG A EY+ +N G+ + YPY+ ++GTC ++ S + +E
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEG 119
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
LL A++ QPVSV V++ GR F YK G+ CG DH V V + G Y L
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAV---GYGKSGGKGYIL 176
Query: 311 IKNSWGETWGESGYIRILR----DAGLCGIATAASYP 343
IKNSWG WGE GYIRI R G+CG+ ++ YP
Sbjct: 177 IKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P ++DWR+KGAVT ++ QG CGSCWAFSAVA VEGI +I GKL+ELSEQ+LVDC +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
HGC GG A EY+ +N G+ + YPY+ ++GTC ++ S + +E
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEG 119
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
LL A++ QPVSV V++ GR F YK G+ CG +H V V + G Y L
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAV---GYGKSGGKGYIL 176
Query: 311 IKNSWGETWGESGYIRILR----DAGLCGIATAASYP 343
IKNSWG WGE GYIRI R G+CG+ ++ YP
Sbjct: 177 IKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 140/216 (64%), Gaps = 8/216 (3%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P S+D+R+KG VT +K+QGQCGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQA 251
GC GG M AF+Y+ +N+G+ +E YPY +E +C AA Y ++P+G+E+A
Sbjct: 61 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKA 119
Query: 252 LLQAVSN-QPVSVCVDASGRAFHFYKSGVLNADCGN--NCDHGVAVVGFGTAEEENGAKY 308
L +AV+ PVSV +DAS +F FY GV + N N +H V VG+G + G K+
Sbjct: 120 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI---QKGNKH 176
Query: 309 WLIKNSWGETWGESGYIRILRDA-GLCGIATAASYP 343
W+IKNSWGE WG GYI + R+ CGIA AS+P
Sbjct: 177 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 212
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 142/217 (65%), Gaps = 8/217 (3%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
P SID+R+KG VT +K+QGQCGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
GC GG M AF+Y+ N+G+ +E YPY ++ +C AA Y ++P+G+E+
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEK 119
Query: 251 ALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADC-GNNCDHGVAVVGFGTAEEENGAK 307
AL +AV+ PVSV +DAS +F FY GV + +C +N +H V VG+G + G K
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGI---QKGNK 176
Query: 308 YWLIKNSWGETWGESGYIRILRDA-GLCGIATAASYP 343
+W+IKNSWGE+WG GYI + R+ CGIA AS+P
Sbjct: 177 HWIIKNSWGESWGNKGYILMARNKNNACGIANLASFP 213
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 140/216 (64%), Gaps = 8/216 (3%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P S+D+R+KG VT +K+QGQCGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQA 251
GC GG M AF+Y+ +N+G+ +E YPY +E +C AA Y ++P+G+E+A
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKA 120
Query: 252 LLQAVSN-QPVSVCVDASGRAFHFYKSGVLNADCGN--NCDHGVAVVGFGTAEEENGAKY 308
L +AV+ PVSV +DAS +F FY GV + N N +H V VG+G + G K+
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI---QKGNKH 177
Query: 309 WLIKNSWGETWGESGYIRILRDA-GLCGIATAASYP 343
W+IKNSWGE WG GYI + R+ CGIA AS+P
Sbjct: 178 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 213
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 140/216 (64%), Gaps = 8/216 (3%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P S+D+R+KG VT +K+QGQCGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQA 251
GC GG M AF+Y+ +N+G+ +E YPY +E +C AA Y ++P+G+E+A
Sbjct: 64 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKA 122
Query: 252 LLQAVSN-QPVSVCVDASGRAFHFYKSGVLNADCGN--NCDHGVAVVGFGTAEEENGAKY 308
L +AV+ PVSV +DAS +F FY GV + N N +H V VG+G + G K+
Sbjct: 123 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI---QKGNKH 179
Query: 309 WLIKNSWGETWGESGYIRILRDA-GLCGIATAASYP 343
W+IKNSWGE WG GYI + R+ CGIA AS+P
Sbjct: 180 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 215
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 197 bits (501), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 171/312 (54%), Gaps = 22/312 (7%)
Query: 44 QWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKE---GNRTYKLGTNEFSDLTNEEFR 100
QW + + Y + + R NI+++N+++I++ N G TY LG N+F+D+T EEF+
Sbjct: 7 QWKRMYNKEY-NGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFK 65
Query: 101 ALYTGYNXXXXXXXXXXXXXXTFKYQ-NVTDVPTSIDWREKGAVTHIKDQGQCGSCWAFS 159
A Y Y+ N VP IDWRE G VT +KDQG CGS WAFS
Sbjct: 66 AKYL-----TEMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAFS 120
Query: 160 AVAAVEGITQITRGKLIELSEQQLVDCSTD--NHGCSGGLMDKAFEYIIENKGLATEADY 217
+EG I SEQQLVDCS N+GC GGLM+ A++Y ++ GL TE+ Y
Sbjct: 121 TTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQFGLETESSY 179
Query: 218 PYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVSNQ-PVSVCVDASGRAFHFYK 276
PY EG C K+ VA ++ + + G E L V + P +V VD F Y+
Sbjct: 180 PYTAVEGQCRYNKQLGVAK-VTGFYTVHSGSEVELKNLVGAEGPAAVAVDVES-DFMMYR 237
Query: 277 SGVLNADCGN--NCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAG-L 333
SG+ + + +H V VG+GT + G YW++KNSWG +WGE GYIR++R+ G +
Sbjct: 238 SGIYQSQTCSPLRVNHAVLAVGYGT---QGGTDYWIVKNSWGLSWGERGYIRMVRNRGNM 294
Query: 334 CGIATAASYPVA 345
CGIA+ AS P+
Sbjct: 295 CGIASLASLPMV 306
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 134/223 (60%), Gaps = 18/223 (8%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P SIDWR+KGAVT +KDQG CG CWAF A A+EGI IT G+LI +SEQQ+VDC T
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQA 251
GG D AF ++I N G+A++A+YPY +GTCD K +AA I Y ++P A
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCD--LNKPIAARIDGYTNVPN-SSSA 118
Query: 252 LLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNC-------DHGVAVVGFGTAEEEN 304
LL AV+ QPVSV + S +F Y + A G++C DH V +VG+G+
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFA--GSSCSDDPATVDHTVLIVGYGS--NGT 174
Query: 305 GAKYWLIKNSWGETWGESGYIRILRDA----GLCGIATAASYP 343
A YW++KNSWG WG GYI I R+ G+C I SYP
Sbjct: 175 NADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYP 217
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 139/214 (64%), Gaps = 8/214 (3%)
Query: 134 SIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNHGC 193
S+D+R+KG VT +K+QGQCGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N GC
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 61
Query: 194 SGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALL 253
GG M AF+Y+ +N+G+ +E YPY +E +C AA Y ++P+G+E+AL
Sbjct: 62 GGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALK 120
Query: 254 QAVSN-QPVSVCVDASGRAFHFYKSGVLNADCGN--NCDHGVAVVGFGTAEEENGAKYWL 310
+AV+ PVSV +DAS +F FY GV + N N +H V VG+G + G K+W+
Sbjct: 121 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI---QKGNKHWI 177
Query: 311 IKNSWGETWGESGYIRILRDA-GLCGIATAASYP 343
IKNSWGE WG GYI + R+ CGIA AS+P
Sbjct: 178 IKNSWGENWGNKGYILMARNKNNACGIANLASFP 211
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 143/218 (65%), Gaps = 10/218 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCS--TD 189
P S+DWREKG VT +K+QGQCG+ +AFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY E +C + +VA + + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDVG-FVDIPK-QE 119
Query: 250 QALLQAVSN-QPVSVCVDASGRAFHFYKSGVL--NADCGNNCDHGVAVVGFGTAEEENGA 306
+AL++AV+ P+SV +DA +F FYK G+ + ++ +H + VVG+G N
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFI--SNNQ 177
Query: 307 KYWLIKNSWGETWGESGYIRILRD-AGLCGIATAASYP 343
KYWL+KNSWGE WG GY+++ +D CGIA+AASYP
Sbjct: 178 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 215
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 194 bits (493), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 139/222 (62%), Gaps = 9/222 (4%)
Query: 129 TDVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCST 188
+++P +DWR +G VT +KDQ CGSCWAFS A+EG GKL+ LSEQ+L+DCS
Sbjct: 5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSR 64
Query: 189 --DNHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQK-EKAVAATISKYEDLP 245
N CSGG M+ AF+Y++++ G+ +E YPY + C Q EK V I ++D+P
Sbjct: 65 AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVV--KILGFKDVP 122
Query: 246 KGDEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENG 305
+ E A+ A++ PVS+ ++A F FY GV +A CG + DHGV +VG+GT ++E+
Sbjct: 123 RRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGT-DKESK 181
Query: 306 AKYWLIKNSWGETWGESGYIRILR---DAGLCGIATAASYPV 344
+W++KNSWG WG GY+ + + G CG+ AS+PV
Sbjct: 182 KDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPV 223
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 194 bits (492), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 134/218 (61%), Gaps = 12/218 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P +DWR+KGAVT +K+QG CGSCWAFSAV +EGI +I G L E SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
+GC+GG A + ++ G+ YPY + C ++++ AA + +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
ALL +++NQPVSV ++A+G+ F Y+ G+ CGN DH VA VG+ G Y L
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYIL 172
Query: 311 IKNSWGETWGESGYIRILRDA----GLCGIATAASYPV 344
IKNSWG WGE+GYIRI R G+CG+ T++ YPV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 142/216 (65%), Gaps = 8/216 (3%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P SID+R+KG VT +K+QGQCGSCWAFS+V A+EG + G L+ L+ Q LVDC ++N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQA 251
GC GG M AF+Y+ N+G+ +E YPY ++ +C AA Y ++P+G+E A
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEAA 120
Query: 252 LLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGNNC-DHGVAVVGFGTAEEENGAKY 308
L +AV+ PVSV +DAS +F FY +GV + +C ++ +H V VG+G + G K+
Sbjct: 121 LKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGI---QAGNKH 177
Query: 309 WLIKNSWGETWGESGYIRILRDA-GLCGIATAASYP 343
W+IKNSWGE+WG +GYI + R+ CGIA AS+P
Sbjct: 178 WIIKNSWGESWGNAGYILMARNKNNACGIANLASFP 213
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 133/218 (61%), Gaps = 12/218 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P +DWR+KGAVT +K+QG CGSCWAFSAV +EGI +I G L + SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
+GC+GG A + ++ G+ YPY + C ++++ AA + ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
ALL +++NQPVSV + A+G+ F Y+ G+ CGN DH VA VG+ G Y L
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYIL 172
Query: 311 IKNSWGETWGESGYIRILRDA----GLCGIATAASYPV 344
IKNSWG WGE+GYIRI R G+CG+ T++ YPV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 133/218 (61%), Gaps = 12/218 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P +DWR+KGAVT +K+QG CGS WAFSAV +EGI +I G L E SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
+GC+GG A + ++ G+ YPY + C ++++ AA + +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
ALL +++NQPVSV ++A+G+ F Y+ G+ CGN DH VA VG+ G Y L
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYIL 172
Query: 311 IKNSWGETWGESGYIRILRDA----GLCGIATAASYPV 344
IKNSWG WGE+GYIRI R G+CG+ T++ YPV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 132/217 (60%), Gaps = 12/217 (5%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P +DWR+KGAVT +K+QG CGSCWAFSAV +EGI +I G L + SEQ+L+DC ++
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQA 251
GC+GG A + ++ G+ YPY + C ++++ AA + ++ A
Sbjct: 62 GCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGA 120
Query: 252 LLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWLI 311
LL +++NQPVSV + A+G+ F Y+ G+ CGN DH VA VG+ G Y LI
Sbjct: 121 LLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYILI 173
Query: 312 KNSWGETWGESGYIRILRDA----GLCGIATAASYPV 344
KNSWG WGE+GYIRI R G+CG+ T++ YPV
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 133/218 (61%), Gaps = 12/218 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P +DWR+KGAVT +K+QG CGS WAFSAV +EGI +I G L + SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
+GC+GG A + ++ G+ YPY + C ++++ AA + +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
ALL +++NQPVSV ++A+G+ F Y+ G+ CGN DH VA VG+ G Y L
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYIL 172
Query: 311 IKNSWGETWGESGYIRILRDA----GLCGIATAASYPV 344
IKNSWG WGE+GYIRI R G+CG+ T++ YPV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 132/218 (60%), Gaps = 12/218 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P +DWR+KGAVT +K+QG CGS WAFSAV +EGI +I G L + SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
+GC+GG A + ++ G+ YPY + C ++++ AA + ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
ALL +++NQPVSV + A+G+ F Y+ G+ CGN DH VA VG+ G Y L
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYIL 172
Query: 311 IKNSWGETWGESGYIRILRDA----GLCGIATAASYPV 344
IKNSWG WGE+GYIRI R G+CG+ T++ YPV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 134/217 (61%), Gaps = 12/217 (5%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+PTSIDWR+KGAVT +++QG CGSCW FS+VAAVEGI +I G+L+ LSEQ+L+DC +
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
+GC GG A +Y + N G+ YPY + C + K +P+ +EQ
Sbjct: 61 YGCRGGFPLYALQY-VANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQ 119
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
AL+Q ++ QPVS+ V+A GRAF Y+ G+ CG + DH VA VG+G Y L
Sbjct: 120 ALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGN-------DYIL 172
Query: 311 IKNSWGETWGESGYIRILRDA----GLCGIATAASYP 343
IKNSWG WGE GYIRI R + G CG+ + + +P
Sbjct: 173 IKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFP 209
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 137/223 (61%), Gaps = 13/223 (5%)
Query: 132 PTSIDWREKG-AVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD- 189
P S+DWR+KG V+ +K+QG CGSCW FS A+E I GK++ L+EQQLVDC+ +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 190 -NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGD 248
NHGC GGL +AFEYI NKG+ E YPY+ ++ C Q +KA+A + ++ D
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIA-FVKDVANITMND 120
Query: 249 EQALLQAVS-NQPVSVCVDASGRAFHFYKSGVLNA-DCGNNCD---HGVAVVGFGTAEEE 303
E+A+++AV+ PVS + + F Y+ G+ ++ C D H V VG+G EE
Sbjct: 121 EEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG---EE 176
Query: 304 NGAKYWLIKNSWGETWGESGYIRILRDAGLCGIATAASYPVAI 346
NG YW++KNSWG WG +GY I R +CG+A ASYP+ +
Sbjct: 177 NGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIPL 219
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 130/218 (59%), Gaps = 8/218 (3%)
Query: 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDN 190
+P S+DWR KGAVT +K QG C SCWAFS VA VEGI +I G L+ELSEQ+LVDC +
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 191 HGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ 250
+GC+ G + +Y+ +N G+ A YPY ++ TC + + + +E
Sbjct: 61 YGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEG 119
Query: 251 ALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWL 310
+LL A+++QPVSV V+++GR F YK G+ CG DH V V + G Y L
Sbjct: 120 SLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAV---GYGKSGGKGYIL 176
Query: 311 IKNSWGETWGESGYIRILR----DAGLCGIATAASYPV 344
IKNSWG WGE+GYIRI R G+CG+ ++ YP+
Sbjct: 177 IKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 214
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 126/218 (57%), Gaps = 11/218 (5%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P ++DWREKGAVT +KDQGQCGSCWAFS + +EG Q+ L+ LSEQ LV C T +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 192 GCSGGLMDKAFEYIIENKG--LATEADYPY---RHEEGTCDNQKEKAVAATISKYEDLPK 246
GC GGLMD AF +I+ + G + TEA YPY E+ C + + A I+ + DLP+
Sbjct: 62 GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHE-IGAAITDHVDLPQ 120
Query: 247 GDEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGA 306
++ N P+++ VDA+ +F Y G+L + DHGV +VG+ A
Sbjct: 121 DEDAIAAYLAENGPLAIAVDAT--SFMDYNGGILTSCTSEQLDHGVLLVGYNDASNP--- 175
Query: 307 KYWLIKNSWGETWGESGYIRILRDAGLCGIATAASYPV 344
YW+IKNSW WGE GYIRI + C + A S V
Sbjct: 176 PYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAV 213
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 135/232 (58%), Gaps = 26/232 (11%)
Query: 130 DVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD 189
D P S DW +KG +T +K QGQCGS WAFSA A+E I G L+ LSEQ+L+DC +
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKY-------E 242
+ GC G ++FE+++++ G+A+EADYPY+ +G C E TI Y E
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKC-KANEIQDKVTIDNYGVQILSNE 119
Query: 243 DLPKGDEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNC------DHGVAVVG 296
E +L V QP+SV +DA + FHFY G+ + G NC +H V +VG
Sbjct: 120 STESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYD---GGNCSSPYGINHFVLIVG 174
Query: 297 FGTAEEENGAKYWLIKNSWGETWGESGYIRILRDA----GLCGIATAASYPV 344
+G+ E+G YW+ KNSWGE WG GYIRI R+ G+CG+ ASYP+
Sbjct: 175 YGS---EDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 170 bits (431), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 123/217 (56%), Gaps = 9/217 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P ++DWR +GAVT +KDQGQCGSCWAFSA+ VE + L LSEQ LV C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 192 GCSGGLMDKAFEYIIE--NKGLATEADYPYRHEEGTCD--NQKEKAVAATISKYEDLPKG 247
GCSGGLM+ AFE+I++ N + TE YPY EG V ATI+ + +LP+
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 248 DEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAK 307
+ Q N PV+V VDAS ++ Y GV+ + DHGV +VG+ +
Sbjct: 122 EAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGY---NDSAAVP 176
Query: 308 YWLIKNSWGETWGESGYIRILRDAGLCGIATAASYPV 344
YW+IKNSW WGE GYIRI + + C + AS V
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 123/217 (56%), Gaps = 9/217 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P ++DWR +GAVT +KDQGQCGSCWAFSA+ VE + L LSEQ LV C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 192 GCSGGLMDKAFEYIIE--NKGLATEADYPYRHEEGTCD--NQKEKAVAATISKYEDLPKG 247
GCSGGLM+ AFE+I++ N + TE YPY EG V ATI+ + +LP+
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 248 DEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAK 307
+ Q N PV+V VDAS ++ Y GV+ + DHGV +VG+ +
Sbjct: 122 EAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEALDHGVLLVGY---NDSAAVP 176
Query: 308 YWLIKNSWGETWGESGYIRILRDAGLCGIATAASYPV 344
YW+IKNSW WGE GYIRI + + C + AS V
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 123/217 (56%), Gaps = 9/217 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P ++DWR +GAVT +KDQGQCGSCWAFSA+ VE + L L+EQ LV C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 192 GCSGGLMDKAFEYIIE--NKGLATEADYPYRHEEGTCD--NQKEKAVAATISKYEDLPKG 247
GCSGGLM+ AFE+I++ N + TE YPY EG V ATI+ + +LP+
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 248 DEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAK 307
+ Q N PV+V VDAS ++ Y GV+ + DHGV +VG+ +
Sbjct: 122 EAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGY---NDGAAVP 176
Query: 308 YWLIKNSWGETWGESGYIRILRDAGLCGIATAASYPV 344
YW+IKNSW WGE GYIRI + + C + AS V
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 123/217 (56%), Gaps = 9/217 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P ++DWR +GAVT +KDQGQCGSCWAFSA+ VE + L L+EQ LV C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 192 GCSGGLMDKAFEYIIE--NKGLATEADYPYRHEEGTCD--NQKEKAVAATISKYEDLPKG 247
GCSGGLM+ AFE+I++ N + TE YPY EG V ATI+ + +LP+
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 248 DEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAK 307
+ Q N PV+V VDAS ++ Y GV+ + DHGV +VG+ +
Sbjct: 122 EAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGY---NDGAAVP 176
Query: 308 YWLIKNSWGETWGESGYIRILRDAGLCGIATAASYPV 344
YW+IKNSW WGE GYIRI + + C + AS V
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 127/220 (57%), Gaps = 14/220 (6%)
Query: 136 DWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNHGCSG 195
DWR VT +KDQ CGSCWAFS++ +VE I + KLI LSEQ+LVDCS N+GC+G
Sbjct: 23 DWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG 82
Query: 196 GLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQA 255
GL++ AFE +IE G+ + DYPY + N I Y +P + L+
Sbjct: 83 GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRF 142
Query: 256 VSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEEN-----GAK--Y 308
+ P+S+ V A F FYK G+ + +CG+ +H V +VGFG E N G K Y
Sbjct: 143 LG--PISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYY 199
Query: 309 WLIKNSWGETWGESGYIRILRD-AGL---CGIATAASYPV 344
++IKNSWG+ WGE G+I I D +GL CG+ T A P+
Sbjct: 200 YIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 126/220 (57%), Gaps = 14/220 (6%)
Query: 136 DWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNHGCSG 195
DWR VT +KDQ CGS WAFS++ +VE I + KLI LSEQ+LVDCS N+GC+G
Sbjct: 22 DWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG 81
Query: 196 GLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQA 255
GL++ AFE +IE G+ + DYPY + N I Y +P + L+
Sbjct: 82 GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRF 141
Query: 256 VSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEEN-----GAK--Y 308
+ P+S+ V A F FYK G+ + +CG+ +H V +VGFG E N G K Y
Sbjct: 142 LG--PISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYY 198
Query: 309 WLIKNSWGETWGESGYIRILRD-AGL---CGIATAASYPV 344
++IKNSWG+ WGE G+I I D +GL CG+ T A P+
Sbjct: 199 YIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 238
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 115/172 (66%), Gaps = 7/172 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +K+QGQCGSCWAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY E +C + +VA + + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVAND-TGFVDIPK-QE 119
Query: 250 QALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG 298
+AL++AV+ P+SV +DA +F FYK G+ DC + + DHGV VVG+G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 114/172 (66%), Gaps = 7/172 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +K+QGQCGS WAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY E +C + +VA + + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVAND-TGFVDIPK-QE 119
Query: 250 QALLQAVSN-QPVSVCVDASGRAFHFYKSGV-LNADCGN-NCDHGVAVVGFG 298
+AL++AV+ P+SV +DA +F FYK G+ DC + + DHGV VVG+G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 118/220 (53%), Gaps = 14/220 (6%)
Query: 136 DWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNHGCSG 195
DWR G VT +KDQ CGSCWAFS+V +VE I + L SEQ+LVDCS N+GC G
Sbjct: 25 DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYG 84
Query: 196 GLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQA 255
G + AF+ +I+ GL ++ DYPY N K TI Y +P + L+
Sbjct: 85 GYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKEALRY 144
Query: 256 VSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAE---EENGAK----Y 308
+ P+S+ + AS F FY+ G + +CG +H V +VG+G + E+ G Y
Sbjct: 145 LG--PISISIAASDD-FAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEKFYY 201
Query: 309 WLIKNSWGETWGESGYIRILRDAG----LCGIATAASYPV 344
++IKNSWG WGE GYI + D C I T A P+
Sbjct: 202 YIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 116/217 (53%), Gaps = 10/217 (4%)
Query: 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191
P DWR KGAVT +KDQG CGSCWAFS VEG + +G L+ LSEQ+L+DC +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQA 251
C GGL A+ I GL TE DY Y+ +C EKA I +L + +++
Sbjct: 62 ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKA-KVYIQDSVELSQNEQKL 120
Query: 252 LLQAVSNQPVSVCVDASGRAFHFYKSGV---LNADCGNNC-DHGVAVVGFGTAEEENGAK 307
P+SV ++A G FY+ G+ L C DH V +VG+G + +
Sbjct: 121 AAWLAKRGPISVAINAFG--MQFYRHGISRPLRPLCSPWLIDHAVLLVGYG---QRSDVP 175
Query: 308 YWLIKNSWGETWGESGYIRILRDAGLCGIATAASYPV 344
+W IKNSWG WGE GY + R +G CG+ T AS V
Sbjct: 176 FWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAV 212
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 111/203 (54%), Gaps = 12/203 (5%)
Query: 127 NVTDVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDC 186
N +VP+ +D R VT I+ QG CGSCWAFS VAA E R ++LSEQ+LVDC
Sbjct: 7 NSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC 66
Query: 187 STDNHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPK 246
++ HGC G + + EYI +N G+ E YPY E C ++ + IS Y +
Sbjct: 67 AS-QHGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQRC--RRPNSQHYGISNYCQIYP 122
Query: 247 GDEQALLQAVSNQPVSVCVDA---SGRAF-HFYKSGVLNADCGNNCD-HGVAVVGFGTAE 301
D + + +A++ ++ V RAF H+ ++ D G + H V +VG+G+ +
Sbjct: 123 PDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGSTQ 182
Query: 302 EENGAKYWLIKNSWGETWGESGY 324
G YW+++NSW TWG+SGY
Sbjct: 183 ---GDDYWIVRNSWDTTWGDSGY 202
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 143/298 (47%), Gaps = 27/298 (9%)
Query: 36 PSIVEKHEQWMAQHGRTYKD-ELEKAMRLNIFKQNLEYIEKANKEGNRTYKLGTNEFSD- 93
PS ++ E++ ++Y E E+A R N F ++++Y++ N L +EF +
Sbjct: 2 PSSIKTFEEYKKAFNKSYATFEDEEAARKN-FLESVKYVQSNGGAINHLSDLSLDEFKNR 60
Query: 94 --LTNEEFRALYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKDQGQ 151
++ E F L T ++ + P ID R+ VT I+ QG
Sbjct: 61 FLMSAEAFEHLKTQFDLNAETNACSING----------NAPAEIDLRQMRTVTPIRMQGG 110
Query: 152 CGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNHGCSGGLMDKAFEYIIENKGL 211
CGS WAFS VAA E R + ++L+EQ+LVDC++ HGC G + + EYI N G+
Sbjct: 111 CGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCAS-QHGCHGDTIPRGIEYIQHN-GV 168
Query: 212 ATEADYPYRHEEGTCDNQKEKAVAATISKYEDL--PKGDE--QALLQAVSNQPVSVCVDA 267
E+ Y Y E +C ++ A IS Y + P ++ +AL Q S V + +
Sbjct: 169 VQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKD 226
Query: 268 SGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGY 324
H+ ++ D G + H V +VG+ A+ G YW+++NSW WG++GY
Sbjct: 227 LDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ---GVDYWIVRNSWDTNWGDNGY 281
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 107/200 (53%), Gaps = 12/200 (6%)
Query: 130 DVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD 189
+ P ID R+ VT I+ QG CGSCWAFS VAA E R + ++L+EQ+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDL--PKG 247
HGC G + + EY I++ G+ E+ Y Y E +C ++ A IS Y + P
Sbjct: 69 -HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNA 124
Query: 248 DE--QALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEEN 304
++ +AL Q S V + + H+ ++ D G + H V +VG+ A+
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ--- 181
Query: 305 GAKYWLIKNSWGETWGESGY 324
G YW+++NSW WG++GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 8/198 (4%)
Query: 130 DVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD 189
+ P ID R+ VT I+ QG CGSCWAFS VAA E R + ++L+EQ+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ 68
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTC--DNQKEKAVAATISKYEDLPKG 247
HGC G + + EY I++ G+ E+ Y Y E +C N + ++ Y
Sbjct: 69 -HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNVNK 126
Query: 248 DEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGA 306
+AL Q S V + + H+ ++ D G + H V +VG+ A+ G
Sbjct: 127 IREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ---GV 183
Query: 307 KYWLIKNSWGETWGESGY 324
YW+++NSW WG++GY
Sbjct: 184 DYWIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 12/200 (6%)
Query: 130 DVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD 189
+ P ID R+ VT I+ QG CGS WAFS VAA E R + ++L+EQ+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 190 NHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDL--PKG 247
HGC G + + EY I++ G+ E+ Y Y E +C ++ A IS Y + P
Sbjct: 69 -HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNA 124
Query: 248 DE--QALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEEN 304
++ +AL Q S V + + H+ ++ D G + H V +VG+ A+
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ--- 181
Query: 305 GAKYWLIKNSWGETWGESGY 324
G YW+++NSW WG++GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 116/237 (48%), Gaps = 30/237 (12%)
Query: 126 QNVTDVPTSIDWREKGA---VTHIKDQGQCGSCWAFSAVAAVEGITQI--TRGKLIELSE 180
Q + +PTS DWR V+ +++Q CGSC++F+++ +E +I + LS
Sbjct: 202 QKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSP 261
Query: 181 QQLVDCSTDNHGCSGGLMDKAFEYIIENK-----GLATEADYPYRHEEGTCDNQKEKAVA 235
Q++V CS GC GG F Y+I K GL EA +PY + C KE
Sbjct: 262 QEVVSCSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPC-KMKEDCFR 315
Query: 236 ATISKYE---DLPKGDEQAL--LQAVSNQPVSVCVDASGRAFHFYKSGVLN----ADCGN 286
S+Y G +AL L+ V + P++V + H YK G+ + D N
Sbjct: 316 YYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH-YKKGIYHHTGLRDPFN 374
Query: 287 N---CDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAGLCGIATAA 340
+H V +VG+GT + +G YW++KNSWG WGE+GY RI R C I + A
Sbjct: 375 PFELTNHAVLLVGYGT-DSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA 430
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 28/242 (11%)
Query: 126 QNVTDVPTSIDWRE-KGA--VTHIKDQGQCGSCWAFSAVAAVEGITQI--TRGKLIELSE 180
Q + +P S DWR +G V+ +++Q CGSC++F+++ +E +I + LS
Sbjct: 201 QQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSP 260
Query: 181 QQLVDCSTDNHGCSGGLMDKAFEYIIENK-----GLATEADYPYRHEEGTCDNQKE--KA 233
Q++V CS GC GG F Y+I K G+ E +PY + C ++ +
Sbjct: 261 QEVVSCSPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRY 315
Query: 234 VAATISKYEDLPKGDEQAL--LQAVSNQPVSVCVDASGRAFHFYKSGVLN----ADCGNN 287
++ G +AL L+ V + P++V + H Y SG+ + +D N
Sbjct: 316 YSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLH-YHSGIYHHTGLSDPFNP 374
Query: 288 ---CDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAGLCGIATAASYPV 344
+H V +VG+G + G YW++KNSWG WGESGY RI R C I + A +
Sbjct: 375 FELTNHAVLLVGYG-KDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAI 433
Query: 345 AI 346
I
Sbjct: 434 PI 435
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 116/251 (46%), Gaps = 46/251 (18%)
Query: 129 TDVPTSIDWREK----GAVTHIKDQGQCGSCWAFSAVAAVEGITQITRG--KLIELSEQQ 182
++P+S D R+K ++ I+DQ +CGSCWAF AV A+ + I G + +ELS
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 183 LVDCSTD-NHGCSGGLMDKAFEYIIENKGLATEAD---------YPY----RHEEG---T 225
L+ C GC GG++ A++Y ++ +G+ T + YP+ H +G
Sbjct: 61 LLSCCESCGLGCEGGILGPAWDYWVK-EGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPP 119
Query: 226 CDNQ--KEKAVAATISKYEDLP--------------KGDEQALLQAVSNQ-PVSVCVDAS 268
C ++ K T K P K DE+A+ + + PV
Sbjct: 120 CGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY 179
Query: 269 GRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRI 327
F YKSG+ G H + ++G+G EN A YWLI NSW E WGE+GY RI
Sbjct: 180 -EDFLNYKSGIYKHITGETLGGHAIRIIGWGV---ENKAPYWLIANSWNEDWGENGYFRI 235
Query: 328 LRDAGLCGIAT 338
+R C I +
Sbjct: 236 VRGRDECSIES 246
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 111/248 (44%), Gaps = 46/248 (18%)
Query: 130 DVPTSIDWREKGA----VTHIKDQGQCGSCWAFSAVAAV-EGITQITRGKL-IELSEQQL 183
++P S D RE+ + + I+DQG CGSCWAF AV A+ + I T G++ +E+S + L
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 184 VDCS--TDNHGCSGGLMDKAFEYIIENKGLATEADY------------PYRHE------- 222
+ C GC+GG A+ + KGL + Y P H
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 124
Query: 223 ---EGTCDNQKEKAVAATISKYED----------LPKGDEQALLQAVSNQPVSVCVDASG 269
EG + A + Y++ + +++ + + N PV
Sbjct: 125 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF- 183
Query: 270 RAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRIL 328
F YKSGV + G+ H + ++G+G ENG YWL+ NSW WG++G+ +IL
Sbjct: 184 SDFLTYKSGVYKHEAGDVMGGHAIRILGWGI---ENGVPYWLVANSWNADWGDNGFFKIL 240
Query: 329 RDAGLCGI 336
R CGI
Sbjct: 241 RGENHCGI 248
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 110/251 (43%), Gaps = 54/251 (21%)
Query: 131 VPTSID----WREKGAVTHIKDQGQCGSCWAFSAVAAV-EGITQITRGKL-IELSEQQLV 184
+P S D W + + I+DQG CGSCWAF AV A+ + I T + +E+S + L+
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 185 DC--STDNHGCSGGLMDKAFEYIIENKGLATEADY-------PY------RHEEGT---C 226
C S GC+GG +A+ + KGL + Y PY H G+ C
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 182
Query: 227 DNQKEKAVAATISK--YEDLPKGDEQ--------------ALLQAVSNQPV----SVCVD 266
+ + + I + Y K D+ + + N PV SV D
Sbjct: 183 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 242
Query: 267 ASGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYI 325
F YKSGV G H + ++G+G ENG YWL+ NSW WG++G+
Sbjct: 243 -----FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFF 294
Query: 326 RILRDAGLCGI 336
+ILR CGI
Sbjct: 295 KILRGQDHCGI 305
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 110/247 (44%), Gaps = 46/247 (18%)
Query: 131 VPTSIDWREKGA----VTHIKDQGQCGSCWAFSAVAAV-EGITQITRGKL-IELSEQQLV 184
+P S D RE+ + + I+DQG CGSCWAF AV A+ + I T G++ +E+S + L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 185 DCS--TDNHGCSGGLMDKAFEYIIENKGLATEADY------------PYRHE-------- 222
C GC+GG A+ + KGL + Y P H
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 119
Query: 223 --EGTCDNQKEKAVAATISKYED----------LPKGDEQALLQAVSNQPVSVCVDASGR 270
EG + A + Y++ + +++ + + N PV
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF-S 178
Query: 271 AFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILR 329
F YKSGV + G+ H + ++G+G ENG YWL+ NSW WG++G+ +ILR
Sbjct: 179 DFLTYKSGVYKHEAGDVMGGHAIRILGWGI---ENGVPYWLVANSWNADWGDNGFFKILR 235
Query: 330 DAGLCGI 336
CGI
Sbjct: 236 GENHCGI 242
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 111/253 (43%), Gaps = 54/253 (21%)
Query: 131 VPTSID----WREKGAVTHIKDQGQCGSCWAFSAVAAV-EGITQITRGKL-IELSEQQLV 184
+P S D W + + I+DQG CGSCWAF AV A+ + I T + +E+S + L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 185 DC--STDNHGCSGGLMDKAFEYIIENKGLATEADY-------PY------RHEEGT---C 226
C S GC+GG +A+ + KGL + Y PY H G+ C
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 227 DNQKEKAVAATISK--YEDLPKGDEQ--------------ALLQAVSNQPV----SVCVD 266
+ + + I + Y K D+ + + N PV SV D
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 180
Query: 267 ASGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYI 325
F YKSGV G H + ++G+G ENG YWL+ NSW WG++G+
Sbjct: 181 -----FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFF 232
Query: 326 RILRDAGLCGIAT 338
+ILR CGI +
Sbjct: 233 KILRGQDHCGIES 245
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 110/251 (43%), Gaps = 54/251 (21%)
Query: 131 VPTSID----WREKGAVTHIKDQGQCGSCWAFSAVAAV-EGITQITRGKL-IELSEQQLV 184
+P S D W + + I+DQG CGSCWAF AV A+ + I T + +E+S + L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 185 DC--STDNHGCSGGLMDKAFEYIIENKGLATEADY-------PY------RHEEGT---C 226
C S GC+GG +A+ + KGL + Y PY H G+ C
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 227 DNQKEKAVAATISK--YEDLPKGDEQ--------------ALLQAVSNQPV----SVCVD 266
+ + + I + Y K D+ + + N PV SV D
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 179
Query: 267 ASGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYI 325
F YKSGV G H + ++G+G ENG YWL+ NSW WG++G+
Sbjct: 180 -----FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFF 231
Query: 326 RILRDAGLCGI 336
+ILR CGI
Sbjct: 232 KILRGQDHCGI 242
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 110/251 (43%), Gaps = 54/251 (21%)
Query: 131 VPTSID----WREKGAVTHIKDQGQCGSCWAFSAVAAV-EGITQITRGKL-IELSEQQLV 184
+P S D W + + I+DQG CGSCWAF AV A+ + I T + +E+S + L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 185 DC--STDNHGCSGGLMDKAFEYIIENKGLATEADY-------PY------RHEEGT---C 226
C S GC+GG +A+ + KGL + Y PY H G+ C
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 227 DNQKEKAVAATISK--YEDLPKGDEQ--------------ALLQAVSNQPV----SVCVD 266
+ + + I + Y K D+ + + N PV SV D
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 181
Query: 267 ASGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYI 325
F YKSGV G H + ++G+G ENG YWL+ NSW WG++G+
Sbjct: 182 -----FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFF 233
Query: 326 RILRDAGLCGI 336
+ILR CGI
Sbjct: 234 KILRGQDHCGI 244
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 102/245 (41%), Gaps = 42/245 (17%)
Query: 131 VPTSID----WREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRG-KLIELSEQQLVD 185
+P+S D W + I DQ CGSCWA +A +A+ G + + +S L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 186 CSTD-NHGCSGGLMDKAFEYIIENKGLATE--ADYPYRHEEGTCDNQKEKAVAATISKYE 242
C +D GC+GG D+A+ Y + GL ++ YP+ H + K K S++
Sbjct: 132 CCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPH---CSHHSKSKNGYPPCSQFN 187
Query: 243 -DLPK------------------------GDEQALLQAVSNQPVSVCVDASGRAFHFYKS 277
D PK G++ + + P V D F Y S
Sbjct: 188 FDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNS 246
Query: 278 GVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAGLCGI 336
GV + G H V +VG+GT+ NG YW I NSW WG GY I R + CGI
Sbjct: 247 GVYHHVSGQYLGGHAVRLVGWGTS---NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 303
Query: 337 ATAAS 341
S
Sbjct: 304 EDGGS 308
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 102/245 (41%), Gaps = 42/245 (17%)
Query: 131 VPTSID----WREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRG-KLIELSEQQLVD 185
+P+S D W + I DQ CGSCWA +A +A+ G + + +S L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 186 CSTD-NHGCSGGLMDKAFEYIIENKGLATE--ADYPYRHEEGTCDNQKEKAVAATISKYE 242
C +D GC+GG D+A+ Y + GL ++ YP+ H + K K S++
Sbjct: 131 CCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPH---CSHHSKSKNGYPPCSQFN 186
Query: 243 -DLPK------------------------GDEQALLQAVSNQPVSVCVDASGRAFHFYKS 277
D PK G++ + + P V D F Y S
Sbjct: 187 FDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNS 245
Query: 278 GVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAGLCGI 336
GV + G H V +VG+GT+ NG YW I NSW WG GY I R + CGI
Sbjct: 246 GVYHHVSGQYLGGHAVRLVGWGTS---NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 302
Query: 337 ATAAS 341
S
Sbjct: 303 EDGGS 307
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 106/251 (42%), Gaps = 44/251 (17%)
Query: 131 VPTSID----WREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRG-KLIELSEQQLVD 185
+P+S D W + I DQ CGSCWA +A +A+ G + + +S L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 186 CSTD-NHGCSGGLMDKAFEYIIENKGLATE--ADYPYRHEEGTCDNQKEKAVAATISKYE 242
C +D GC+GG D+A+ Y + GL ++ YP+ H + K K S++
Sbjct: 154 CCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPH---CSHHSKSKNGYPPCSQFN 209
Query: 243 -DLPK------------------------GDEQALLQAVSNQPVSVCVDASGRAFHFYKS 277
D PK G++ + + P V D F Y S
Sbjct: 210 FDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNS 268
Query: 278 GVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAGLCGI 336
GV + G H V +VG+GT+ NG YW I NSW WG GY I R + CGI
Sbjct: 269 GVYHHVSGQYLGGHAVRLVGWGTS---NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 325
Query: 337 --ATAASYPVA 345
+A P+A
Sbjct: 326 EDGGSAGIPLA 336
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 111/250 (44%), Gaps = 46/250 (18%)
Query: 130 DVPTSIDWREKGA----VTHIKDQGQCGSCWAFSAVAAV-EGITQITRGKL-IELSEQQL 183
++P S D RE+ + + I+DQG CGS WAF AV A+ + I T G++ +E+S + L
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 184 VDCSTDN--HGCSGGLMDKAFEYIIENKGLATEADY------------PYRHE------- 222
+ C GC+GG A+ + KGL + Y P H
Sbjct: 122 LTCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 180
Query: 223 ---EGTCDNQKEKAVAATISKYED----------LPKGDEQALLQAVSNQPVSVCVDASG 269
EG + A + Y++ + +++ + + N PV
Sbjct: 181 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF- 239
Query: 270 RAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRIL 328
F YKSGV + G+ H + ++G+G ENG YWL+ NSW WG++G+ +IL
Sbjct: 240 SDFLTYKSGVYKHEAGDVMGGHAIRILGWGI---ENGVPYWLVANSWNADWGDNGFFKIL 296
Query: 329 RDAGLCGIAT 338
R CGI +
Sbjct: 297 RGENHCGIES 306
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 108/251 (43%), Gaps = 54/251 (21%)
Query: 131 VPTSID----WREKGAVTHIKDQGQCGSCWAFSAVAAV-EGITQITRGKL-IELSEQQLV 184
+P S D W + + I+DQG CGS WAF AV A+ + I T + +E+S + L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 185 DC--STDNHGCSGGLMDKAFEYIIENKGLATEADY-------PYR------HEEG---TC 226
C S GC+GG +A+ + KGL + Y PY H G C
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 227 DNQKEKAVAATISK--YEDLPKGDEQ--------------ALLQAVSNQPV----SVCVD 266
+ + + I + Y K D+ + + N PV SV D
Sbjct: 126 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 185
Query: 267 ASGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYI 325
F YKSGV G H + ++G+G ENG YWL+ NSW WG++G+
Sbjct: 186 -----FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFF 237
Query: 326 RILRDAGLCGI 336
+ILR CGI
Sbjct: 238 KILRGQDHCGI 248
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 37/232 (15%)
Query: 124 KYQNVTDVPTSIDWREKGAVT--------HIKDQGQCGSCWAFSAVAAVEGITQITRGKL 175
+Y + D+P S DWR V HI CGSCWA ++ +A+ I R
Sbjct: 29 EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQY--CGSCWAHASTSAMADRINIKRKGA 86
Query: 176 IE---LSEQQLVDCSTDNHGCSGGLMDKAFEYIIENKGLATEA--DYPYRHEE------- 223
LS Q ++DC C GG ++Y ++ G+ E +Y + +E
Sbjct: 87 WPSTLLSVQNVIDCGNAG-SCEGGNDLSVWDYAHQH-GIPDETCNNYQAKDQECDKFNQC 144
Query: 224 GTCDNQKE-----KAVAATISKYEDLPKGDEQALLQAVSNQPVSVCVDASGRAFHFYKSG 278
GTC+ KE + Y L G E+ + + +N P+S + A+ R ++ +G
Sbjct: 145 GTCNEFKECHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMATERLANY--TG 201
Query: 279 VLNADCGNNC--DHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRIL 328
+ A+ + +H V+V G+G ++ G +YW+++NSWGE WGE G++RI+
Sbjct: 202 GIYAEYQDTTYINHVVSVAGWGISD---GTEYWIVRNSWGEPWGERGWLRIV 250
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 37/225 (16%)
Query: 131 VPTSIDWREKGAVT--------HIKDQGQCGSCWAFSAVAAVEGITQITRGKLIE---LS 179
+P S DWR V HI CGSCWA ++ +A+ I R LS
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQY--CGSCWAHASTSAMADRINIKRKGAWPSTLLS 58
Query: 180 EQQLVDCSTDNHGCSGGLMDKAFEYIIENKGLATEA--DYPYRHEE-------GTCDNQK 230
Q ++DC C GG ++Y ++ G+ E +Y + +E GTC+ K
Sbjct: 59 VQNVIDCGNAG-SCEGGNDLSVWDYAHQH-GIPDETCNNYQAKDQECDKFNQCGTCNEFK 116
Query: 231 E-----KAVAATISKYEDLPKGDEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCG 285
E + Y L G E+ + + +N P+S + A+ R ++ +G + A+
Sbjct: 117 ECHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMATERLANY--TGGIYAEYQ 173
Query: 286 NN--CDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRIL 328
+ +H V+V G+G ++ G +YW+++NSWGE WGE G++RI+
Sbjct: 174 DTTYINHVVSVAGWGISD---GTEYWIVRNSWGEPWGERGWLRIV 215
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 54/253 (21%)
Query: 131 VPTSIDWREK----GAVTHIKDQGQCGSCWAFSAVAAV-EGITQITRGKL-IELSEQQLV 184
+P S D RE+ + I+DQG CGSCWAF AV A+ + I + G++ +E+S + ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 185 DCSTDNHGCSGGLMDKAFEY-IIENKGLATEADY-------PY------RHEEGT----- 225
C G + + + KGL + Y PY H G+
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 226 -------CDNQKEKAVAAT--------ISKYEDLPKGDEQALLQAVSNQPV----SVCVD 266
C E + + S Y + +++ + + N PV SV D
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSY-SVANNEKEIMAEIYKNGPVEGAFSVYSD 179
Query: 267 ASGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYI 325
F YKSGV G H + ++G+G ENG YWL+ NSW WG++G+
Sbjct: 180 -----FLLYKSGVYQHVSGEIMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFF 231
Query: 326 RILRDAGLCGIAT 338
+ILR CGI +
Sbjct: 232 KILRGQDHCGIES 244
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 105/253 (41%), Gaps = 54/253 (21%)
Query: 131 VPTSIDWREK----GAVTHIKDQGQCGSCWAFSAVAAV-EGITQITRGKL-IELSEQQLV 184
+P S D RE+ + I+DQG CGSCWAF AV A+ + I + G++ +E+S + ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 185 DCS--------------------TDNHGCSGGLMDKAF---EYIIENKGLATEADYPYRH 221
C T SGGL + Y I P
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 222 EEG---TCDNQKEKAVAAT--------ISKYEDLPKGDEQALLQAVSNQPV----SVCVD 266
EG C E + + S Y + +++ + + N PV SV D
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSY-SVANNEKEIMAEIYKNGPVEGAFSVYSD 179
Query: 267 ASGRAFHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYI 325
F YKSGV G H + ++G+G ENG YWL+ NSW WG++G+
Sbjct: 180 -----FLLYKSGVYQHVSGEIMGGHAIRILGWGV---ENGTPYWLVGNSWNTDWGDNGFF 231
Query: 326 RILRDAGLCGIAT 338
+ILR CGI +
Sbjct: 232 KILRGQDHCGIES 244
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 22/166 (13%)
Query: 131 VPTSIDWREKGA---VTHIKDQGQCGSCWAFSAVAAVEGITQI--TRGKLIELSEQQLVD 185
+PTS DWR V+ +++Q CGSC++F+++ +E +I + LS Q++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 186 CSTDNHGCSGGLMDKAFEYIIENK-----GLATEADYPYRHEEGTCDNQKEKAVAATISK 240
CS GC GG F Y+I K GL EA +PY + C KE S+
Sbjct: 61 CSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPC-KMKEDCFRYYSSE 114
Query: 241 YE---DLPKGDEQAL--LQAVSNQPVSVCVDASGRAFHFYKSGVLN 281
Y G +AL L+ V + P++V + H YK G+ +
Sbjct: 115 YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH-YKKGIYH 159
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 33/215 (15%)
Query: 146 IKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNHG--CSGGLMDKAFE 203
++DQG C + W F++ +E I + + ++S + +C H C G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 204 YIIENKG-LATEADYPYR-------------HEEGTCDNQK-------------EKAVAA 236
IIE+ G L E++YPY H DN K + A
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 237 TISKYEDLPKGDEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGVLNADCGNN-CDHGVAV 294
++ D + + V N+ V + A + + + CG++ DH V +
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNI 204
Query: 295 VGFGTAEEENGAK--YWLIKNSWGETWGESGYIRI 327
VG+G G K YW+++NSWG WG+ GY ++
Sbjct: 205 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 33/215 (15%)
Query: 146 IKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNHG--CSGGLMDKAFE 203
++DQG C + W F++ +E I + + ++S + +C H C G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 204 YIIENKG-LATEADYPYR-------------HEEGTCDNQK-------------EKAVAA 236
IIE+ G L E++YPY H DN K + A
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 237 TISKYEDLPKGDEQALLQAVSNQ-PVSVCVDASGRAFHFYKSGVLNADCGNN-CDHGVAV 294
++ D + + V N+ V + A + + + CG++ DH V +
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVNI 203
Query: 295 VGFGTAEEENGAK--YWLIKNSWGETWGESGYIRI 327
VG+G G K YW+++NSWG WG+ GY ++
Sbjct: 204 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 289 DHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAGLCGIATAA 340
+H V +VG+GT + +G YW++KNSWG WGE+GY RI R C I + A
Sbjct: 10 NHAVLLVGYGT-DSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA 60
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 307 KYWLIKNSWGETWGESGYIRILRD-AGLCGIATAASYP 343
KYWL+KNSWGE WG GY+++ +D CGIA+AASYP
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 40
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 272 FHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRD 330
F YKSGV G H + ++G+G ENG YWL+ NSW WG++G+ +ILR
Sbjct: 131 FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFFKILRG 187
Query: 331 AGLCGIAT 338
CGI +
Sbjct: 188 QDHCGIES 195
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 272 FHFYKSGVLNADCGNNCD-HGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRD 330
F YKSGV G H + ++G+G ENG YWL+ NSW WG++G+ +ILR
Sbjct: 132 FLLYKSGVYQHVSGEIMGGHAIRILGWGV---ENGTPYWLVGNSWNTDWGDNGFFKILRG 188
Query: 331 AGLCGIAT 338
CGI +
Sbjct: 189 QDHCGIES 196
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 35 EPSIVEKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKEGNRTYKLGTNEFSDL 94
E + + A + ++Y E EK R IFK NL YI N++G +Y L N F DL
Sbjct: 18 EAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQG-YSYSLKMNHFGDL 76
Query: 95 TNEEFRALYTGY 106
+ +EFR Y G+
Sbjct: 77 SRDEFRRKYLGF 88
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 131 VPTSIDWREK----GAVTHIKDQGQCGSCWAFSAVAAV 164
+P S D RE+ + I+DQG CGSCWAF AV A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 131 VPTSIDWREK----GAVTHIKDQGQCGSCWAFSAVAAV 164
+P S D RE+ + I+DQG CGSCWAF AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 43 EQWM---AQHGRTYKDELEKAMRLNIFKQNLEYIEKANKE---GNRTYKLGTNEFSDLTN 96
E+W+ ++ + Y+ E E MR I+ ++ IE+ N++ G T+K+G N +DLT
Sbjct: 8 EEWVEYKSKFDKNYEAE-EDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 97 EEF 99
EEF
Sbjct: 67 EEF 69
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 39/210 (18%)
Query: 145 HIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLV----DCSTDNH-GCSGGLMD 199
+ DQG+ GSC A + AA++ +I + E +L + + H G M
Sbjct: 68 QVYDQGRIGSCTANALAAAIQ-FERIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMI 126
Query: 200 KAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQ--------A 251
+ ++ G+ E ++PY ++ A K D D Q
Sbjct: 127 RDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSR 186
Query: 252 LLQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNC----------------DHGVAVV 295
+ Q + + + C+ A G F F S V N+ GNN H V V
Sbjct: 187 VAQDIDH--LKACL-AVGSPFVFGFS-VYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCV 242
Query: 296 GFGTAEEENGAKYWLIKNSWGETWGESGYI 325
G+ ++ +++ I+NSWG GE GY
Sbjct: 243 GY-----DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 289 DHGVAVVGFGTAEEENGAKYWLIKNSWG 316
DHG + +G A+++ G +Y+ +KNSWG
Sbjct: 317 DHGXQI--YGIAKDQEGNEYYXVKNSWG 342
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 139 EKGAVTHIKDQGQCGSCWAFSAVAAVE 165
++ +T +K+Q + G+CW +S+ + +E
Sbjct: 18 KENPITSVKNQNRAGTCWCYSSYSFLE 44
>pdb|2WVY|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVY|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVY|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
Length = 737
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 136 DWREKGAVTHIKDQGQCGSCW--AFSAVAAVEGITQITRG--KLIELSEQQLVDCSTDNH 191
+WR++ T GS W +S EG++++ G +I + V +T N+
Sbjct: 500 NWRDRFDATEWGGPFTEGSSWHWTWSVFHDPEGLSELMGGHEPMIARLDSMFVAPNTYNY 559
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYRH 221
G G ++ + E + N G + P +H
Sbjct: 560 GTYGFVIHEIAEMVALNMGQYAHGNQPVQH 589
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 290 HGVAVVGFGTAEEENGA-KYWLIKNSWGETWGESGYI 325
H + ++++GA W ++NSWGE G GY+
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 290 HGVAVVGFGTAEEENGA-KYWLIKNSWGETWGESGYI 325
H + ++++GA W ++NSWGE G GY+
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,927,533
Number of Sequences: 62578
Number of extensions: 405806
Number of successful extensions: 1499
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 166
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)