Query 019063
Match_columns 346
No_of_seqs 291 out of 1855
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:22:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 1.4E-84 3.1E-89 583.9 26.2 303 32-344 61-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 9.4E-82 2E-86 591.9 36.4 327 5-343 3-338 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 9.6E-79 2.1E-83 587.2 32.3 311 30-345 157-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 5.2E-77 1.1E-81 573.6 33.2 302 35-345 119-445 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 7.4E-71 1.6E-75 514.6 30.5 287 46-345 30-324 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 1.1E-59 2.5E-64 426.1 22.2 213 131-346 1-243 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 6.1E-59 1.3E-63 419.9 22.9 209 131-346 1-239 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 3E-58 6.5E-63 408.1 22.4 206 132-343 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 1.1E-57 2.5E-62 410.8 21.4 205 132-342 1-235 (236)
10 PF00112 Peptidase_C1: Papain 100.0 2E-56 4.4E-61 398.1 18.3 211 131-344 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 4.2E-55 9.1E-60 431.4 24.0 215 128-345 378-676 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 1.5E-54 3.1E-59 423.6 22.8 207 129-341 203-455 (548)
13 smart00645 Pept_C1 Papain fami 100.0 1.4E-50 2.9E-55 348.2 17.8 166 131-340 1-170 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 3.2E-47 6.8E-52 339.6 20.2 193 134-330 1-212 (223)
15 PTZ00462 Serine-repeat antigen 100.0 1.3E-45 2.9E-50 373.5 21.7 201 143-345 544-781 (1004)
16 KOG1544 Predicted cysteine pro 100.0 3.3E-44 7.2E-49 318.8 6.4 265 71-341 151-456 (470)
17 COG4870 Cysteine protease [Pos 100.0 9.9E-32 2.1E-36 245.1 7.6 197 130-330 98-313 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 1.2E-23 2.7E-28 202.1 13.9 179 144-330 55-399 (437)
19 PF08246 Inhibitor_I29: Cathep 99.7 1.2E-17 2.6E-22 116.9 7.5 58 42-99 1-58 (58)
20 PF03051 Peptidase_C1_2: Pepti 99.7 1.8E-15 3.8E-20 146.0 16.7 179 144-330 56-400 (438)
21 smart00848 Inhibitor_I29 Cathe 99.6 3.1E-15 6.7E-20 104.3 5.0 57 42-98 1-57 (57)
22 COG3579 PepC Aminopeptidase C 98.8 4.2E-08 9.1E-13 89.4 10.1 76 249-328 297-400 (444)
23 KOG4128 Bleomycin hydrolases a 97.2 0.00069 1.5E-08 62.2 5.6 76 143-219 62-168 (457)
24 PF13529 Peptidase_C39_2: Pept 97.0 0.0078 1.7E-07 48.8 10.1 57 247-315 87-144 (144)
25 PF05543 Peptidase_C47: Stapho 96.9 0.012 2.7E-07 49.6 10.2 120 148-317 18-146 (175)
26 PF08127 Propeptide_C1: Peptid 96.7 0.0017 3.7E-08 41.4 2.7 36 70-108 3-38 (41)
27 PF14399 Transpep_BrtH: NlpC/p 90.6 0.7 1.5E-05 43.2 6.6 46 249-300 78-124 (317)
28 PF12385 Peptidase_C70: Papain 84.8 13 0.00028 31.1 9.6 38 248-300 97-135 (166)
29 PF09778 Guanylate_cyc_2: Guan 81.3 5.9 0.00013 34.9 6.8 59 248-313 112-180 (212)
30 COG4990 Uncharacterized protei 79.5 5.5 0.00012 34.0 5.7 52 242-316 116-168 (195)
31 cd00044 CysPc Calpains, domain 76.4 8.2 0.00018 36.2 6.8 29 288-317 235-263 (315)
32 cd02549 Peptidase_C39A A sub-f 67.6 19 0.00041 28.7 6.3 44 252-315 70-114 (141)
33 PF07172 GRP: Glycine rich pro 53.5 8.2 0.00018 29.5 1.5 6 6-11 3-8 (95)
34 PF15240 Pro-rich: Proline-ric 38.9 20 0.00042 30.7 1.7 13 13-25 1-13 (179)
35 PF01640 Peptidase_C10: Peptid 38.3 1.4E+02 0.0031 25.6 7.2 49 250-326 141-192 (192)
36 KOG4702 Uncharacterized conser 32.6 1.6E+02 0.0035 21.0 5.1 31 40-71 29-59 (77)
37 smart00230 CysPc Calpain-like 32.6 68 0.0015 30.1 4.5 27 288-317 227-255 (318)
38 CHL00024 psbI photosystem II p 31.1 26 0.00056 21.4 0.9 24 2-25 3-26 (36)
39 PRK02655 psbI photosystem II r 30.7 18 0.0004 22.2 0.2 24 2-25 3-26 (38)
40 PF12606 RELT: Tumour necrosis 28.6 61 0.0013 21.6 2.4 23 2-26 2-24 (50)
41 PF02532 PsbI: Photosystem II 28.0 75 0.0016 19.4 2.5 24 2-25 3-26 (36)
42 PF06143 Baculo_11_kDa: Baculo 26.6 1.2E+02 0.0026 22.5 3.9 16 56-71 67-82 (84)
43 PF03032 Brevenin: Brevenin/es 22.7 50 0.0011 21.6 1.1 19 6-24 4-22 (46)
44 PF04202 Mfp-3: Foot protein 3 22.1 71 0.0015 22.5 1.8 17 10-26 5-21 (71)
45 PF14663 RasGEF_N_2: Rapamycin 21.9 89 0.0019 24.6 2.7 34 31-64 75-108 (115)
46 COG4871 Uncharacterized protei 20.9 60 0.0013 27.2 1.6 16 145-160 135-152 (193)
47 KOG3300 NADH:ubiquinone oxidor 20.7 3.3E+02 0.0071 22.1 5.5 88 4-92 27-115 (146)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-84 Score=583.85 Aligned_cols=303 Identities=39% Similarity=0.760 Sum_probs=267.6
Q ss_pred CCCchhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcCCCCCCC
Q 019063 32 SMHEPSIVEKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEFRALYTGYNRPVP 111 (346)
Q Consensus 32 ~~~~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsD~t~~E~~~~~~~~~~~~~ 111 (346)
........+.|..|+.+|+|+|.+.+|..+|+.+|++|+..+++++.....|.+.|+|+|||||+|||++++++.+....
T Consensus 61 ~~~~l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~ 140 (372)
T KOG1542|consen 61 NPRGLGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGS 140 (372)
T ss_pred CCcccchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccc
Confidence 34455568999999999999999999999999999999999999988654589999999999999999999987665311
Q ss_pred CCCcCCCCCcccccCCCCCCCCceecccCCCCCcccCCCCCchhHHHHHHHHHHHHHHHhcCCCccCChhhhhhcCCCCC
Q 019063 112 SVSRQSSRPSTFKYQNVTDVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTDNH 191 (346)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~ 191 (346)
..... ....+......||++||||++|.||||||||+||||||||+++++|+++.++++++++||||+|+||+..++
T Consensus 141 ~~~~~---~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~ 217 (372)
T KOG1542|consen 141 KLPGD---AAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDN 217 (372)
T ss_pred cCccc---cccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCC
Confidence 11111 111112334689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCCCCCCccccCCCC-CcccccccCceEEeeeeeeCCCchHHHHHHHHh-cCCeEEEEEcCC
Q 019063 192 GCSGGLMDKAFEYIIENKGLATEADYPYRHEEG-TCDNQKEKAVAATISKYEDLPKGDEQALLQAVS-NQPVSVCVDASG 269 (346)
Q Consensus 192 gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~c~~~~~~~~~~~i~~~~~v~~~~~~~i~~al~-~gPV~v~~~~~~ 269 (346)
||+||.+..|++|+++..|+..|++|||++..+ .|... .....+.|++|..++ .|+++|.+.|. +|||+|+|++.
T Consensus 218 gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~-~~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~- 294 (372)
T KOG1542|consen 218 GCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFD-KSKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAK- 294 (372)
T ss_pred cCCCCChhHHHHHHHHhCCccccccCCccccCCCccccc-hhhceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchH-
Confidence 999999999999988888999999999999988 89887 577889999999998 58999988886 89999999975
Q ss_pred cccccccCceEeC---CCCCC-CCeEEEEEEeccCCCCC-CccEEEEEcCCCCCcCCCceEEEEeCCCccccccceeeee
Q 019063 270 RAFHFYKSGVLNA---DCGNN-CDHGVAVVGFGTAEEEN-GAKYWLIKNSWGETWGESGYIRILRDAGLCGIATAASYPV 344 (346)
Q Consensus 270 ~~f~~y~~Gi~~~---~~~~~-~~Hav~iVGyg~~~~~~-g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~ 344 (346)
.+|+|.+||..+ .|+.. ++|+|+|||||.. . +++|||||||||++|||+||+|+.||.|.|||+++++-+.
T Consensus 295 -~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~---g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 295 -PMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSS---GYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA 370 (372)
T ss_pred -HHHHhcccccCCCcccCCccccCceEEEEeecCC---CCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence 799999999998 38754 8999999999998 5 7999999999999999999999999999999999987654
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=9.4e-82 Score=591.92 Aligned_cols=327 Identities=35% Similarity=0.650 Sum_probs=269.3
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCce
Q 019063 5 FEKSFIIPMFVIIILVITCASQVVSGRSMHEPSIVEKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKEGNRTY 84 (346)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~ 84 (346)
-+|..+|++.++..+|+.... ...+..-..++.++|++|+++|+|.|.+.+|+.+|++||++|+++|++||++. .+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~-~~~ 79 (348)
T PTZ00203 3 TSRAALCAVAVVCVVLAAACA--PARAIYVGTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARN-PHA 79 (348)
T ss_pred hhHHHHHHHHHHHHHHHHhhc--cchhcccccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccC-CCe
Confidence 367788888887766665333 33344447778889999999999999988899999999999999999999874 699
Q ss_pred EEEcccCCCCCHHHHHHHHcCCCCCCCCCCcCCCCCcccc--cCCCCCCCCceecccCCCCCcccCCCCCchhHHHHHHH
Q 019063 85 KLGTNEFSDLTNEEFRALYTGYNRPVPSVSRQSSRPSTFK--YQNVTDVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVA 162 (346)
Q Consensus 85 ~~g~N~fsD~t~~E~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lP~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~ 162 (346)
++|+|+|+|||.|||.+++++............ ..... ...+.+||++||||+.|.|+||||||.||||||||+++
T Consensus 80 ~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~ 157 (348)
T PTZ00203 80 RFGITKFFDLSEAEFAARYLNGAAYFAAAKQHA--GQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVG 157 (348)
T ss_pred EEeccccccCCHHHHHHHhcCCCcccccccccc--cccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHH
Confidence 999999999999999987764211110000000 00011 11234689999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccCChhhhhhcCCCCCCCCCCchHHHHHHHHHh--CCCCCCCCccccCCCC---CcccccccCceEE
Q 019063 163 AVEGITQITRGKLIELSEQQLVDCSTDNHGCSGGLMDKAFEYIIEN--KGLATEADYPYRHEEG---TCDNQKEKAVAAT 237 (346)
Q Consensus 163 ~le~~~~~~~~~~~~lS~q~l~dc~~~~~gc~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~c~~~~~~~~~~~ 237 (346)
++|+++++++++.++||+|+|+||+..+.||+||++..|++|+.++ +|+++|++|||.+.++ .|..........+
T Consensus 158 aiEs~~~i~~~~~~~LSeQqLvdC~~~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~ 237 (348)
T PTZ00203 158 NIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGAR 237 (348)
T ss_pred HHHHHHHHhcCCCccCCHHHHHhccCCCCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceE
Confidence 9999999999999999999999999878899999999999999764 5689999999998766 5764322223567
Q ss_pred eeeeeeCCCchHHHHHHHHh-cCCeEEEEEcCCcccccccCceEeCCCC-CCCCeEEEEEEeccCCCCCCccEEEEEcCC
Q 019063 238 ISKYEDLPKGDEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVLNADCG-NNCDHGVAVVGFGTAEEENGAKYWLIKNSW 315 (346)
Q Consensus 238 i~~~~~v~~~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~-~~~~Hav~iVGyg~~~~~~g~~ywivkNSW 315 (346)
+++|..++. ++++|+.+|. +|||++++++. +|++|++|||+. |. ...+|||+|||||.+ +|++||||||||
T Consensus 238 i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~---~g~~YWiikNSW 310 (348)
T PTZ00203 238 IDGYVSMES-SERVMAAWLAKNGPISIAVDAS--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMT---GEVPYWVIKNSW 310 (348)
T ss_pred ecceeecCc-CHHHHHHHHHhCCCEEEEEEhh--hhcCccCceeec-cCCCCCCeEEEEEEEecC---CCceEEEEEcCC
Confidence 888988874 7888999997 79999999985 799999999985 65 457999999999987 789999999999
Q ss_pred CCCcCCCceEEEEeCCCccccccceeee
Q 019063 316 GETWGESGYIRILRDAGLCGIATAASYP 343 (346)
Q Consensus 316 G~~WG~~Gy~~i~~~~~~Cgi~~~~~~p 343 (346)
|++|||+|||||+|+.|.|||+++++..
T Consensus 311 G~~WGe~GY~ri~rg~n~Cgi~~~~~~~ 338 (348)
T PTZ00203 311 GEDWGEKGYVRVTMGVNACLLTGYPVSV 338 (348)
T ss_pred CCCcCcCceEEEEcCCCcccccceEEEE
Confidence 9999999999999999999999887764
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=9.6e-79 Score=587.22 Aligned_cols=311 Identities=39% Similarity=0.675 Sum_probs=260.2
Q ss_pred cCCCCchhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcCCCCC
Q 019063 30 GRSMHEPSIVEKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEFRALYTGYNRP 109 (346)
Q Consensus 30 ~~~~~~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsD~t~~E~~~~~~~~~~~ 109 (346)
.+.....+....|++|+.+|+|+|.+.+|+.+|+.+|++|+++|++||++++.+|++|+|+|+|||.|||++++++....
T Consensus 157 ~~~~~n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~ 236 (489)
T PTZ00021 157 KFLMTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSF 236 (489)
T ss_pred hhhccChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhcccccc
Confidence 34445566778999999999999999999999999999999999999987668999999999999999999887764421
Q ss_pred CC-CCCcCCCCC-------cccccCCCCCCCCceecccCCCCCcccCCCCCchhHHHHHHHHHHHHHHHhcCCCccCChh
Q 019063 110 VP-SVSRQSSRP-------STFKYQNVTDVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQ 181 (346)
Q Consensus 110 ~~-~~~~~~~~~-------~~~~~~~~~~lP~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q 181 (346)
.. .......+. ..+........|+++|||+.|.|+||||||.||||||||+++++|++++++++..++||+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQ 316 (489)
T PTZ00021 237 DFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQ 316 (489)
T ss_pred ccccccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHH
Confidence 10 000000000 0000111112499999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCchHHHHHHHHHhCCCCCCCCccccCC-CCCcccccccCceEEeeeeeeCCCchHHHHHHHHh-cC
Q 019063 182 QLVDCSTDNHGCSGGLMDKAFEYIIENKGLATEADYPYRHE-EGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVS-NQ 259 (346)
Q Consensus 182 ~l~dc~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~c~~~~~~~~~~~i~~~~~v~~~~~~~i~~al~-~g 259 (346)
+|+||+..+.||+||++..|+.|+.+++|+++|++|||.+. .+.|... .....+++++|..++ +++|+++|. .|
T Consensus 317 qLVDCs~~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~-~~~~~~~i~~y~~i~---~~~lk~al~~~G 392 (489)
T PTZ00021 317 ELVDCSFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNID-RCKEKYKIKSYVSIP---EDKFKEAIRFLG 392 (489)
T ss_pred HHhhhccCCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccc-cccccceeeeEEEec---HHHHHHHHHhcC
Confidence 99999987899999999999999988779999999999987 4789754 234567889998886 467999998 79
Q ss_pred CeEEEEEcCCcccccccCceEeCCCCCCCCeEEEEEEeccCCC-------CCCccEEEEEcCCCCCcCCCceEEEEeCC-
Q 019063 260 PVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEE-------ENGAKYWLIKNSWGETWGESGYIRILRDA- 331 (346)
Q Consensus 260 PV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~-------~~g~~ywivkNSWG~~WG~~Gy~~i~~~~- 331 (346)
||+|++++. .+|++|++|||+++|+..++|||+|||||++.. ..+.+|||||||||++|||+|||||+|+.
T Consensus 393 PVsv~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~ 471 (489)
T PTZ00021 393 PISVSIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDEN 471 (489)
T ss_pred CeEEEEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCC
Confidence 999999997 689999999999889878899999999997521 12357999999999999999999999984
Q ss_pred ---Cccccccceeeeee
Q 019063 332 ---GLCGIATAASYPVA 345 (346)
Q Consensus 332 ---~~Cgi~~~~~~p~~ 345 (346)
|+|||++.++||++
T Consensus 472 g~~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 472 GLMKTCSLGTEAYVPLI 488 (489)
T ss_pred CCCCCCCCcccceeEec
Confidence 59999999999974
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=5.2e-77 Score=573.61 Aligned_cols=302 Identities=37% Similarity=0.682 Sum_probs=253.8
Q ss_pred chhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcCCCCCCCCC-
Q 019063 35 EPSIVEKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEFRALYTGYNRPVPSV- 113 (346)
Q Consensus 35 ~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsD~t~~E~~~~~~~~~~~~~~~- 113 (346)
+.++...|++|+++|+|.|.+.+|+.+|+.+|++|+++|++||. +.+|++|+|+|+|||+|||.+++++...+....
T Consensus 119 e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~ 196 (448)
T PTZ00200 119 EFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNS 196 (448)
T ss_pred hHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeEEeccccccCCHHHHHHHhccCCCcccccc
Confidence 46667789999999999999999999999999999999999996 368999999999999999998876544321000
Q ss_pred --Cc---C---C-CCC--ccccc-----CCC----CCCCCceecccCCCCCcccCCC-CCchhHHHHHHHHHHHHHHHhc
Q 019063 114 --SR---Q---S-SRP--STFKY-----QNV----TDVPTSIDWREKGAVTHIKDQG-QCGSCWAFSAVAAVEGITQITR 172 (346)
Q Consensus 114 --~~---~---~-~~~--~~~~~-----~~~----~~lP~~~Dwr~~g~v~pVkdQg-~cGsCwAfA~~~~le~~~~~~~ 172 (346)
.. . . .+. ..... ..+ ..+|+++|||+.|.|+|||||| .||||||||+++++|+++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~ 276 (448)
T PTZ00200 197 TSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYR 276 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhc
Confidence 00 0 0 000 00000 001 1369999999999999999999 9999999999999999999999
Q ss_pred CCCccCChhhhhhcCCCCCCCCCCchHHHHHHHHHhCCCCCCCCccccCCCCCcccccccCceEEeeeeeeCCCchHHHH
Q 019063 173 GKLIELSEQQLVDCSTDNHGCSGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQAL 252 (346)
Q Consensus 173 ~~~~~lS~q~l~dc~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~v~~~~~~~i 252 (346)
+..++||+|+|+||+..+.||+||++..|++|+.++ |+++|++|||.+..+.|... ......|.+|..++ ..+.+
T Consensus 277 ~~~~~LSeQqLvDC~~~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~--~~~~~~i~~y~~~~--~~~~l 351 (448)
T PTZ00200 277 DKSVDLSEQELVNCDTKSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVS--STKKVYIDSYLVAK--GKDVL 351 (448)
T ss_pred CCCeecCHHHHhhccCccCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCC--CCCeeEecceEecC--HHHHH
Confidence 999999999999999778999999999999999775 99999999999999999765 23346688887664 35667
Q ss_pred HHHHhcCCeEEEEEcCCcccccccCceEeCCCCCCCCeEEEEEEeccCCCCCCccEEEEEcCCCCCcCCCceEEEEeC--
Q 019063 253 LQAVSNQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRD-- 330 (346)
Q Consensus 253 ~~al~~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~-- 330 (346)
++++..|||+|+|++. .+|+.|++|||+++|+..++|||+|||||.+. .+|.+|||||||||++|||+|||||+|+
T Consensus 352 ~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~-~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~ 429 (448)
T PTZ00200 352 NKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDE-KTKKRYWIIKNSWGTDWGENGYMRLERTNE 429 (448)
T ss_pred HHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccC-CCCCceEEEEcCCCCCcccCeeEEEEeCCC
Confidence 7777799999999997 78999999999988987789999999999642 2678999999999999999999999996
Q ss_pred -CCccccccceeeeee
Q 019063 331 -AGLCGIATAASYPVA 345 (346)
Q Consensus 331 -~~~Cgi~~~~~~p~~ 345 (346)
.|.|||++.+.||++
T Consensus 430 g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 430 GTDKCGILTVGLTPVF 445 (448)
T ss_pred CCCcCCccccceeeEE
Confidence 589999999999986
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-71 Score=514.64 Aligned_cols=287 Identities=45% Similarity=0.839 Sum_probs=251.5
Q ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcCCCCCCCCCCcCCCCCccccc
Q 019063 46 MAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEFRALYTGYNRPVPSVSRQSSRPSTFKY 125 (346)
Q Consensus 46 ~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsD~t~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (346)
+.+|.+.|.+..|+..|+.+|.+|++.|+.||.....+|++|+|+|+|++.+|+...+.+.+++... . ......
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~--~----~~~~~~ 103 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIK--R----DKFTEK 103 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCcccc--c----cccccc
Confidence 6677788877789999999999999999999998678999999999999999999887776655421 0 111112
Q ss_pred CCCCCCCCceecccCC-CCCcccCCCCCchhHHHHHHHHHHHHHHHhcC-CCccCChhhhhhcCCC-CCCCCCCchHHHH
Q 019063 126 QNVTDVPTSIDWREKG-AVTHIKDQGQCGSCWAFSAVAAVEGITQITRG-KLIELSEQQLVDCSTD-NHGCSGGLMDKAF 202 (346)
Q Consensus 126 ~~~~~lP~~~Dwr~~g-~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~dc~~~-~~gc~GG~~~~a~ 202 (346)
....++|++||||+++ .++||||||.||||||||++++||++++++++ .++.||+|+|+||... ++||+||.+..|+
T Consensus 104 ~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~ 183 (325)
T KOG1543|consen 104 LDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAF 183 (325)
T ss_pred cchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHH
Confidence 2345799999999996 56669999999999999999999999999999 8999999999999996 8899999999999
Q ss_pred HHHHHhCCCCC-CCCccccCCCCCcccccccCceEEeeeeeeCCCchHHHHHHHHh-cCCeEEEEEcCCcccccccCceE
Q 019063 203 EYIIENKGLAT-EADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVL 280 (346)
Q Consensus 203 ~~~~~~~Gi~~-e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~v~~~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~ 280 (346)
+|+.++ |+++ +++|||.+..+.|..... .....+.++..++.+ +++|+++|+ +|||+|+|++. .+|+.|++|||
T Consensus 184 ~yi~~~-G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~-~~F~~Y~~GVy 259 (325)
T KOG1543|consen 184 KYIKKN-GGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAY-EDFSLYKGGVY 259 (325)
T ss_pred HHHHHh-CCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeeh-hhhhhccCceE
Confidence 999998 6555 999999999999998743 667778888888754 999999998 79999999999 49999999999
Q ss_pred eCCCC-C-CCCeEEEEEEeccCCCCCCccEEEEEcCCCCCcCCCceEEEEeCCCccccccceee-eee
Q 019063 281 NADCG-N-NCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAGLCGIATAASY-PVA 345 (346)
Q Consensus 281 ~~~~~-~-~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~-p~~ 345 (346)
.+++. . .++|||+|||||.. +|.+|||||||||+.|||+|||||.|+.+.|+|++.++| |..
T Consensus 260 ~~~~~~~~~~~Hav~iVGyG~~---~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 260 AEEKGDDKEGDHAVLIVGYGTG---DGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPIK 324 (325)
T ss_pred eCCCCCCCCCCceEEEEEEcCC---CCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCCC
Confidence 99944 4 59999999999994 889999999999999999999999999999999999999 754
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.1e-59 Score=426.10 Aligned_cols=213 Identities=34% Similarity=0.692 Sum_probs=183.9
Q ss_pred CCCceecccCC----CCCcccCCCCCchhHHHHHHHHHHHHHHHhcCC------CccCChhhhhhcCCCCCCCCCCchHH
Q 019063 131 VPTSIDWREKG----AVTHIKDQGQCGSCWAFSAVAAVEGITQITRGK------LIELSEQQLVDCSTDNHGCSGGLMDK 200 (346)
Q Consensus 131 lP~~~Dwr~~g----~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~------~~~lS~q~l~dc~~~~~gc~GG~~~~ 200 (346)
||++||||+.+ +|+||||||.||||||||++++||++++++++. .+.||+|+|+||...+.||+||++..
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~~~~ 80 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGFPFL 80 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCCHHH
Confidence 79999999998 999999999999999999999999999998776 68999999999998788999999999
Q ss_pred HHHHHHHhCCCCCCCCccccC-CCCCcccccccCceEEeeeeeeCC----CchHHHHHHHHh-cCCeEEEEEcCCccccc
Q 019063 201 AFEYIIENKGLATEADYPYRH-EEGTCDNQKEKAVAATISKYEDLP----KGDEQALLQAVS-NQPVSVCVDASGRAFHF 274 (346)
Q Consensus 201 a~~~~~~~~Gi~~e~~yPY~~-~~~~c~~~~~~~~~~~i~~~~~v~----~~~~~~i~~al~-~gPV~v~~~~~~~~f~~ 274 (346)
|++|+.+. |+++|++|||.. ..+.|..........+++.|..+. ..++++||++|. +|||+++|++. ++|+.
T Consensus 81 a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~~ 158 (243)
T cd02621 81 VGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFDF 158 (243)
T ss_pred HHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-ccccc
Confidence 99999875 999999999998 678897552133344455554442 247889999997 89999999998 68999
Q ss_pred ccCceEeCC-----CCC---------CCCeEEEEEEeccCCCCCCccEEEEEcCCCCCcCCCceEEEEeCCCccccccce
Q 019063 275 YKSGVLNAD-----CGN---------NCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAGLCGIATAA 340 (346)
Q Consensus 275 y~~Gi~~~~-----~~~---------~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~ 340 (346)
|++|||+.+ |.. .++|||+|||||++.. +|.+|||||||||++|||+|||||+|+.|.|||++.+
T Consensus 159 Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~-~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~ 237 (243)
T cd02621 159 YKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEI-KGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQA 237 (243)
T ss_pred cCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCC-CCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccce
Confidence 999999875 532 4799999999998721 3889999999999999999999999999999999999
Q ss_pred eeeeeC
Q 019063 341 SYPVAI 346 (346)
Q Consensus 341 ~~p~~~ 346 (346)
++...|
T Consensus 238 ~~~~~~ 243 (243)
T cd02621 238 VFAYPI 243 (243)
T ss_pred EeeccC
Confidence 887654
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=6.1e-59 Score=419.88 Aligned_cols=209 Identities=30% Similarity=0.640 Sum_probs=183.5
Q ss_pred CCCceecccCC---CCCcccCCC---CCchhHHHHHHHHHHHHHHHhcC---CCccCChhhhhhcCCCCCCCCCCchHHH
Q 019063 131 VPTSIDWREKG---AVTHIKDQG---QCGSCWAFSAVAAVEGITQITRG---KLIELSEQQLVDCSTDNHGCSGGLMDKA 201 (346)
Q Consensus 131 lP~~~Dwr~~g---~v~pVkdQg---~cGsCwAfA~~~~le~~~~~~~~---~~~~lS~q~l~dc~~~~~gc~GG~~~~a 201 (346)
||++||||+.+ +++|||||| .||||||||++++||+++.++++ ..+.||+|+|+||+. +.||+||++..|
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~~~~a 79 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGDPGGV 79 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcCHHHH
Confidence 69999999987 899999998 89999999999999999998765 357899999999998 789999999999
Q ss_pred HHHHHHhCCCCCCCCccccCCCCCccccc--------------ccCceEEeeeeeeCCCchHHHHHHHHh-cCCeEEEEE
Q 019063 202 FEYIIENKGLATEADYPYRHEEGTCDNQK--------------EKAVAATISKYEDLPKGDEQALLQAVS-NQPVSVCVD 266 (346)
Q Consensus 202 ~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~--------------~~~~~~~i~~~~~v~~~~~~~i~~al~-~gPV~v~~~ 266 (346)
++|+.++ |+++|++|||......|.... .....+++++|..++ ++++|+++|. +|||+++|+
T Consensus 80 ~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i~ 156 (239)
T cd02698 80 YEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGIM 156 (239)
T ss_pred HHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEEE
Confidence 9999875 999999999998776675310 012346677887775 5788999886 899999999
Q ss_pred cCCcccccccCceEeCC-CCCCCCeEEEEEEeccCCCCCCccEEEEEcCCCCCcCCCceEEEEeCC-----Cccccccce
Q 019063 267 ASGRAFHFYKSGVLNAD-CGNNCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDA-----GLCGIATAA 340 (346)
Q Consensus 267 ~~~~~f~~y~~Gi~~~~-~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-----~~Cgi~~~~ 340 (346)
+. ++|+.|++|||+.+ |...++|||+|||||++ .+|++|||||||||++|||+|||||+|+. |+|||++.+
T Consensus 157 ~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~--~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~ 233 (239)
T cd02698 157 AT-EALENYTGGVYKEYVQDPLINHIISVAGWGVD--ENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDC 233 (239)
T ss_pred ec-ccccccCCeEEccCCCCCcCCeEEEEEEEEec--CCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccce
Confidence 98 58999999999887 55668999999999987 13899999999999999999999999998 999999999
Q ss_pred eeeeeC
Q 019063 341 SYPVAI 346 (346)
Q Consensus 341 ~~p~~~ 346 (346)
.|+.+|
T Consensus 234 ~~~~~~ 239 (239)
T cd02698 234 AWADPI 239 (239)
T ss_pred EEEeeC
Confidence 999876
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=3e-58 Score=408.07 Aligned_cols=206 Identities=59% Similarity=1.118 Sum_probs=189.8
Q ss_pred CCceecccCCCCCcccCCCCCchhHHHHHHHHHHHHHHHhcCCCccCChhhhhhcCCC-CCCCCCCchHHHHHHHHHhCC
Q 019063 132 PTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD-NHGCSGGLMDKAFEYIIENKG 210 (346)
Q Consensus 132 P~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~-~~gc~GG~~~~a~~~~~~~~G 210 (346)
|++||||+.+.++||+|||.||+|||||++++||++++++++...+||+|+|++|... +.+|.||....|++++.+ .|
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~-~G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKN-GG 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHH-CC
Confidence 8899999999999999999999999999999999999999998899999999999986 789999999999998876 49
Q ss_pred CCCCCCccccCCCCCcccccccCceEEeeeeeeCCCchHHHHHHHHh-cCCeEEEEEcCCcccccccCceEeCC-C-CCC
Q 019063 211 LATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVLNAD-C-GNN 287 (346)
Q Consensus 211 i~~e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~v~~~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~-~-~~~ 287 (346)
+++|++|||......|... .....+++++|..+...+.++||++|. +|||++++.+. ++|+.|++|||..+ | ...
T Consensus 80 i~~e~~yPY~~~~~~C~~~-~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~~ 157 (210)
T cd02248 80 LASESDYPYTGKDGTCKYN-SSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNTN 157 (210)
T ss_pred cCccccCCccCCCCCccCC-CCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCCc
Confidence 9999999999988889776 446788999999998767899999998 79999999997 68999999999987 4 356
Q ss_pred CCeEEEEEEeccCCCCCCccEEEEEcCCCCCcCCCceEEEEeCCCccccccceeee
Q 019063 288 CDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAGLCGIATAASYP 343 (346)
Q Consensus 288 ~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p 343 (346)
++|||+|||||++ .|.+|||||||||++||++|||||+|+.|.|||++++.||
T Consensus 158 ~~Hav~iVGy~~~---~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~ 210 (210)
T cd02248 158 LNHAVLLVGYGTE---NGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210 (210)
T ss_pred CCEEEEEEEEeec---CCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence 7999999999998 6889999999999999999999999999999999998876
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.1e-57 Score=410.83 Aligned_cols=205 Identities=38% Similarity=0.743 Sum_probs=175.4
Q ss_pred CCceecccC--CCC--CcccCCCCCchhHHHHHHHHHHHHHHHhcC--CCccCChhhhhhcCCC-CCCCCCCchHHHHHH
Q 019063 132 PTSIDWREK--GAV--THIKDQGQCGSCWAFSAVAAVEGITQITRG--KLIELSEQQLVDCSTD-NHGCSGGLMDKAFEY 204 (346)
Q Consensus 132 P~~~Dwr~~--g~v--~pVkdQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~dc~~~-~~gc~GG~~~~a~~~ 204 (346)
|++||||+. +++ +||+|||.||+|||||++++||+++.++++ ..+.||+|+|+||+.. +.||+||++..|++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 899999997 454 599999999999999999999999999887 7789999999999987 789999999999999
Q ss_pred HHHhCCCCCCCCccccCCCCC------------------cccccc---cCceEEeeeeeeCCCchHHHHHHHHh-cCCeE
Q 019063 205 IIENKGLATEADYPYRHEEGT------------------CDNQKE---KAVAATISKYEDLPKGDEQALLQAVS-NQPVS 262 (346)
Q Consensus 205 ~~~~~Gi~~e~~yPY~~~~~~------------------c~~~~~---~~~~~~i~~~~~v~~~~~~~i~~al~-~gPV~ 262 (346)
++++ |+++|++|||...... |..... .....++..+..+. .++++||.+|. +|||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeE
Confidence 9876 9999999999876543 322110 11234455555565 47889999997 89999
Q ss_pred EEEEcCCcccccccCceEeCCCC-CCCCeEEEEEEeccCCCCCCccEEEEEcCCCCCcCCCceEEEEeCCCcccccccee
Q 019063 263 VCVDASGRAFHFYKSGVLNADCG-NNCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAGLCGIATAAS 341 (346)
Q Consensus 263 v~~~~~~~~f~~y~~Gi~~~~~~-~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~ 341 (346)
++|++. ++|+.|++|||+.+|. ..++|||+|||||++ +|++|||||||||++|||+|||||+|+.|.|||++.++
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~---~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~ 234 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVE---NGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVV 234 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEecc---CCeeEEEEEeCCCCCCCCCcEEEEEccCccccccccee
Confidence 999996 7999999999987655 346899999999988 78999999999999999999999999999999999876
Q ss_pred e
Q 019063 342 Y 342 (346)
Q Consensus 342 ~ 342 (346)
.
T Consensus 235 ~ 235 (236)
T cd02620 235 A 235 (236)
T ss_pred c
Confidence 3
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=2e-56 Score=398.08 Aligned_cols=211 Identities=44% Similarity=0.892 Sum_probs=184.0
Q ss_pred CCCceecccC-CCCCcccCCCCCchhHHHHHHHHHHHHHHHhc-CCCccCChhhhhhcCC-CCCCCCCCchHHHHHHHHH
Q 019063 131 VPTSIDWREK-GAVTHIKDQGQCGSCWAFSAVAAVEGITQITR-GKLIELSEQQLVDCST-DNHGCSGGLMDKAFEYIIE 207 (346)
Q Consensus 131 lP~~~Dwr~~-g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~-~~~~~lS~q~l~dc~~-~~~gc~GG~~~~a~~~~~~ 207 (346)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|.. .+.+|+||++..|++++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999998 7889999999999998 5789999999999999998
Q ss_pred hCCCCCCCCccccCCC-CCcccccccCceEEeeeeeeCCCchHHHHHHHHh-cCCeEEEEEcCCcccccccCceEeCC-C
Q 019063 208 NKGLATEADYPYRHEE-GTCDNQKEKAVAATISKYEDLPKGDEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVLNAD-C 284 (346)
Q Consensus 208 ~~Gi~~e~~yPY~~~~-~~c~~~~~~~~~~~i~~~~~v~~~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~-~ 284 (346)
+.|+++|++|||.... ..|..........++..|..+...+.++||++|. +|||++++.+...+|+.|++|||..+ |
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~ 160 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDC 160 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSS
T ss_pred cCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccc
Confidence 4599999999999877 6898663222357888999888667999999998 69999999998446999999999997 6
Q ss_pred C-CCCCeEEEEEEeccCCCCCCccEEEEEcCCCCCcCCCceEEEEeCCC-ccccccceeeee
Q 019063 285 G-NNCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDAG-LCGIATAASYPV 344 (346)
Q Consensus 285 ~-~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~-~Cgi~~~~~~p~ 344 (346)
. ..++|||+|||||++ .|++|||||||||++||++|||||+|+.+ +|||++.++||+
T Consensus 161 ~~~~~~Hav~iVGy~~~---~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 161 SNESGGHAVLIVGYDDE---NGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp SSSSEEEEEEEEEEEEE---TTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred ccccccccccccccccc---cceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 5 478999999999998 68999999999999999999999999976 999999999995
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=4.2e-55 Score=431.37 Aligned_cols=215 Identities=28% Similarity=0.581 Sum_probs=179.6
Q ss_pred CCCCCCceecccC----CCCCcccCCCCCchhHHHHHHHHHHHHHHHhcCC-----C-----ccCChhhhhhcCCCCCCC
Q 019063 128 VTDVPTSIDWREK----GAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGK-----L-----IELSEQQLVDCSTDNHGC 193 (346)
Q Consensus 128 ~~~lP~~~Dwr~~----g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~-----~-----~~lS~q~l~dc~~~~~gc 193 (346)
..+||++||||+. +.++||+|||.||||||||++++||++++++++. . ..||+|+|+||+..+.||
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC 457 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGC 457 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCc
Confidence 4689999999984 6799999999999999999999999999998643 1 279999999999888999
Q ss_pred CCCchHHHHHHHHHhCCCCCCCCccccCCCCCccccccc--------------------------------------Cce
Q 019063 194 SGGLMDKAFEYIIENKGLATEADYPYRHEEGTCDNQKEK--------------------------------------AVA 235 (346)
Q Consensus 194 ~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~--------------------------------------~~~ 235 (346)
+||++..|++|+.+. ||++|++|||.+..+.|...... ..+
T Consensus 458 ~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 536 (693)
T PTZ00049 458 NGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPAR 536 (693)
T ss_pred CCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999875 99999999999888888542110 112
Q ss_pred EEeeeeeeCC-------CchHHHHHHHHh-cCCeEEEEEcCCcccccccCceEeCC-------CCC--------------
Q 019063 236 ATISKYEDLP-------KGDEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVLNAD-------CGN-------------- 286 (346)
Q Consensus 236 ~~i~~~~~v~-------~~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~-------~~~-------------- 286 (346)
+.+++|..+. ..++++|+.+|. +|||+|+|++. ++|++|++|||+.+ |..
T Consensus 537 ~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~ 615 (693)
T PTZ00049 537 WYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGW 615 (693)
T ss_pred eeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCcccccccccccccc
Confidence 3345555553 146888999997 79999999997 68999999999852 531
Q ss_pred -CCCeEEEEEEeccCCCCCC--ccEEEEEcCCCCCcCCCceEEEEeCCCccccccceeeeee
Q 019063 287 -NCDHGVAVVGFGTAEEENG--AKYWLIKNSWGETWGESGYIRILRDAGLCGIATAASYPVA 345 (346)
Q Consensus 287 -~~~Hav~iVGyg~~~~~~g--~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~~ 345 (346)
..+|||+|||||.+. .+| .+|||||||||++||++|||||+|+.|.|||++.++|+..
T Consensus 616 e~~NHAVlIVGwG~d~-enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~p 676 (693)
T PTZ00049 616 EKVNHAIVLVGWGEEE-INGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEP 676 (693)
T ss_pred ccCceEEEEEEecccc-CCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEee
Confidence 369999999999752 145 3799999999999999999999999999999999998764
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.5e-54 Score=423.63 Aligned_cols=207 Identities=24% Similarity=0.515 Sum_probs=176.0
Q ss_pred CCCCCceecccCC---CCCcccCCCC---CchhHHHHHHHHHHHHHHHhcC------CCccCChhhhhhcCCCCCCCCCC
Q 019063 129 TDVPTSIDWREKG---AVTHIKDQGQ---CGSCWAFSAVAAVEGITQITRG------KLIELSEQQLVDCSTDNHGCSGG 196 (346)
Q Consensus 129 ~~lP~~~Dwr~~g---~v~pVkdQg~---cGsCwAfA~~~~le~~~~~~~~------~~~~lS~q~l~dc~~~~~gc~GG 196 (346)
.+||++||||+.| +++||||||. ||||||||++++||++++++++ ..+.||+|+|+||+..++||+||
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdGG 282 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAGG 282 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCCC
Confidence 5799999999987 7999999999 9999999999999999999873 46789999999999778999999
Q ss_pred chHHHHHHHHHhCCCCCCCCc--cccCCCC---CcccccccCceEEeee------eeeCCCchHHHHHHHHh-cCCeEEE
Q 019063 197 LMDKAFEYIIENKGLATEADY--PYRHEEG---TCDNQKEKAVAATISK------YEDLPKGDEQALLQAVS-NQPVSVC 264 (346)
Q Consensus 197 ~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~c~~~~~~~~~~~i~~------~~~v~~~~~~~i~~al~-~gPV~v~ 264 (346)
++..|++|+.++ |+++|++| ||.+.++ .|... .....+.++. |..+. .++++|+.+|. +|||+|+
T Consensus 283 ~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~-~~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVsVa 359 (548)
T PTZ00364 283 FPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTR-RPSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVPAS 359 (548)
T ss_pred cHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCC-cccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeEEE
Confidence 999999999875 99999999 9987655 48654 2333333433 43333 46788999997 7999999
Q ss_pred EEcCCcccccccCceEeC---------CC-----------CCCCCeEEEEEEeccCCCCCCccEEEEEcCCCC--CcCCC
Q 019063 265 VDASGRAFHFYKSGVLNA---------DC-----------GNNCDHGVAVVGFGTAEEENGAKYWLIKNSWGE--TWGES 322 (346)
Q Consensus 265 ~~~~~~~f~~y~~Gi~~~---------~~-----------~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~--~WG~~ 322 (346)
|++. .+|..|++|||.+ .| ....+|||+|||||.+ ++|.+|||||||||+ +|||+
T Consensus 360 Ida~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~d--e~G~~YWIVKNSWGt~~~WGE~ 436 (548)
T PTZ00364 360 VYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTD--ENGGDYWLVLDPWGSRRSWCDG 436 (548)
T ss_pred EEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEeccc--CCCceEEEEECCCCCCCCcccC
Confidence 9998 6899999999862 11 1347999999999975 268899999999999 99999
Q ss_pred ceEEEEeCCCcccccccee
Q 019063 323 GYIRILRDAGLCGIATAAS 341 (346)
Q Consensus 323 Gy~~i~~~~~~Cgi~~~~~ 341 (346)
|||||+|+.|+|||++.++
T Consensus 437 GYfRI~RG~N~CGIes~~v 455 (548)
T PTZ00364 437 GTRKIARGVNAYNIESEVV 455 (548)
T ss_pred CeEEEEcCCCcccccceee
Confidence 9999999999999999987
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.4e-50 Score=348.16 Aligned_cols=166 Identities=62% Similarity=1.161 Sum_probs=149.3
Q ss_pred CCCceecccCCCCCcccCCCCCchhHHHHHHHHHHHHHHHhcCCCccCChhhhhhcCCC-CCCCCCCchHHHHHHHHHhC
Q 019063 131 VPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD-NHGCSGGLMDKAFEYIIENK 209 (346)
Q Consensus 131 lP~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~-~~gc~GG~~~~a~~~~~~~~ 209 (346)
||++||||+.++++||+|||.||+|||||+++++|++++++++..++||+|+|++|... +.+|.||.+..|++|+.++.
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999986 67999999999999998755
Q ss_pred CCCCCCCccccCCCCCcccccccCceEEeeeeeeCCCchHHHHHHHHhcCCeEEEEEcCCcccccccCceEeCC-CCC-C
Q 019063 210 GLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVSNQPVSVCVDASGRAFHFYKSGVLNAD-CGN-N 287 (346)
Q Consensus 210 Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~v~~~~~~~i~~al~~gPV~v~~~~~~~~f~~y~~Gi~~~~-~~~-~ 287 (346)
|+++|++|||+. ++.+.+. +|+.|++|||+.+ |.. .
T Consensus 81 Gi~~e~~~PY~~----------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~~~~~ 118 (174)
T smart00645 81 GLETESCYPYTG----------------------------------------SVAIDAS--DFQFYKSGIYDHPGCGSGT 118 (174)
T ss_pred CcccccccCccc----------------------------------------EEEEEcc--cccCCcCeEECCCCCCCCc
Confidence 899999999975 4555554 5999999999985 764 3
Q ss_pred CCeEEEEEEeccCCCCCCccEEEEEcCCCCCcCCCceEEEEeCC-Cccccccce
Q 019063 288 CDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRDA-GLCGIATAA 340 (346)
Q Consensus 288 ~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~~~ 340 (346)
++|+|+|||||.+ .+|++|||||||||+.||++|||||+|+. |.|||+...
T Consensus 119 ~~Hav~ivGyg~~--~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~ 170 (174)
T smart00645 119 LDHAVLIVGYGTE--ENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV 170 (174)
T ss_pred ccEEEEEEEEeec--CCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence 7999999999975 36789999999999999999999999997 999996554
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=3.2e-47 Score=339.64 Aligned_cols=193 Identities=32% Similarity=0.585 Sum_probs=167.1
Q ss_pred ceecccCCCCCcccCCCCCchhHHHHHHHHHHHHHHHhcC--CCccCChhhhhhcCCCC-----CCCCCCchHHHHH-HH
Q 019063 134 SIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRG--KLIELSEQQLVDCSTDN-----HGCSGGLMDKAFE-YI 205 (346)
Q Consensus 134 ~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~dc~~~~-----~gc~GG~~~~a~~-~~ 205 (346)
.+|||+.+ ++||+|||.||+|||||+++++|++++++.+ ..++||+|+|++|.... .+|.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999998 9999999999999999999999999999887 78999999999998763 6899999999998 66
Q ss_pred HHhCCCCCCCCccccCCCCCcccc---cccCceEEeeeeeeCCCchHHHHHHHHh-cCCeEEEEEcCCcccccccCceEe
Q 019063 206 IENKGLATEADYPYRHEEGTCDNQ---KEKAVAATISKYEDLPKGDEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVLN 281 (346)
Q Consensus 206 ~~~~Gi~~e~~yPY~~~~~~c~~~---~~~~~~~~i~~~~~v~~~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~ 281 (346)
.. .|+++|++|||......|... .......++..|..+...++++||++|. .|||++++.+. ..|..|++|++.
T Consensus 80 ~~-~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~ 157 (223)
T cd02619 80 AL-KGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIY 157 (223)
T ss_pred HH-cCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCcccc
Confidence 55 599999999999887776532 1344567889999888777899999998 79999999998 789999999873
Q ss_pred -----CC-C-CCCCCeEEEEEEeccCCCCCCccEEEEEcCCCCCcCCCceEEEEeC
Q 019063 282 -----AD-C-GNNCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWGESGYIRILRD 330 (346)
Q Consensus 282 -----~~-~-~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~ 330 (346)
.. + ...++|||+|||||++.. .+++|||||||||+.||++||+||+++
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~-~~~~~~i~~NSwG~~wg~~Gy~~i~~~ 212 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYV-EGKGAFIVKNSWGTDWGDNGYGRISYE 212 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCC-CCCCEEEEEeCCCCccccCCEEEEehh
Confidence 22 2 346799999999999822 378999999999999999999999997
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=373.52 Aligned_cols=201 Identities=22% Similarity=0.488 Sum_probs=160.7
Q ss_pred CCcccCCCCCchhHHHHHHHHHHHHHHHhcCCCccCChhhhhhcCCC--CCCCCCCchH-HHHHHHHHhCCCCCCCCccc
Q 019063 143 VTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD--NHGCSGGLMD-KAFEYIIENKGLATEADYPY 219 (346)
Q Consensus 143 v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~--~~gc~GG~~~-~a~~~~~~~~Gi~~e~~yPY 219 (346)
..||||||.||+|||||+++++|++++++++..+.||+|+|+||+.. +.||.||+.. .++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 47899999999999999999999999999999999999999999864 6899999744 56688877766899999999
Q ss_pred cC--CCCCccccccc-----------------CceEEeeeeeeCCCc----h----HHHHHHHHh-cCCeEEEEEcCCcc
Q 019063 220 RH--EEGTCDNQKEK-----------------AVAATISKYEDLPKG----D----EQALLQAVS-NQPVSVCVDASGRA 271 (346)
Q Consensus 220 ~~--~~~~c~~~~~~-----------------~~~~~i~~~~~v~~~----~----~~~i~~al~-~gPV~v~~~~~~~~ 271 (346)
.. ..+.|+..... .....+.+|..+... + +++|+++|+ .|||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 45678643110 012234556555321 1 468899998 79999999985 5
Q ss_pred ccccc-CceEeCC-CCC-CCCeEEEEEEeccCCC--CCCccEEEEEcCCCCCcCCCceEEEEe-CCCccccccceeeeee
Q 019063 272 FHFYK-SGVLNAD-CGN-NCDHGVAVVGFGTAEE--ENGAKYWLIKNSWGETWGESGYIRILR-DAGLCGIATAASYPVA 345 (346)
Q Consensus 272 f~~y~-~Gi~~~~-~~~-~~~Hav~iVGyg~~~~--~~g~~ywivkNSWG~~WG~~Gy~~i~~-~~~~Cgi~~~~~~p~~ 345 (346)
|+.|. +|||... |+. .++|||+|||||.... .+|++|||||||||+.|||+|||||.| +.+.|||.....+|++
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~f 781 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVIF 781 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeeeE
Confidence 88884 8987655 874 5799999999997521 236799999999999999999999998 6999999887777764
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=3.3e-44 Score=318.80 Aligned_cols=265 Identities=28% Similarity=0.528 Sum_probs=206.4
Q ss_pred HHHHHHccCCCCceEEE-cccCCCCCHHHHHHHHcCCCCCCCCCCcCCCCCcccccCCCCCCCCceecccC--CCCCccc
Q 019063 71 EYIEKANKEGNRTYKLG-TNEFSDLTNEEFRALYTGYNRPVPSVSRQSSRPSTFKYQNVTDVPTSIDWREK--GAVTHIK 147 (346)
Q Consensus 71 ~~I~~~N~~~~~s~~~g-~N~fsD~t~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~--g~v~pVk 147 (346)
++|+++|. ++.+|+++ ..+|..||.++-.+..+|..+|... ...|+.... .......||+.||-|++ +++.|+.
T Consensus 151 d~iE~in~-G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~s-v~nMNEi~~-~l~p~~~LPE~F~As~KWp~liH~pl 227 (470)
T KOG1544|consen 151 DMIEAINQ-GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSS-VMNMNEIYT-VLNPGEVLPEAFEASEKWPNLIHEPL 227 (470)
T ss_pred HHHHHHhc-CCccccccchhhhhcccccccceeeecccCchhh-hhhHHhHhh-ccCcccccchhhhhhhcCCccccCcc
Confidence 57889997 56899986 6699999999977777887766532 122211110 11223579999999987 8899999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhcCC--CccCChhhhhhcCCC-CCCCCCCchHHHHHHHHHhCCCCCCCCccccCC--
Q 019063 148 DQGQCGSCWAFSAVAAVEGITQITRGK--LIELSEQQLVDCSTD-NHGCSGGLMDKAFEYIIENKGLATEADYPYRHE-- 222 (346)
Q Consensus 148 dQg~cGsCwAfA~~~~le~~~~~~~~~--~~~lS~q~l~dc~~~-~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-- 222 (346)
|||.|++.|||+++++...+++|.... ...||+|+|++|... .+||.||+...|+=|+.+. |++...+|||...
T Consensus 228 DQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~ 306 (470)
T KOG1544|consen 228 DQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQA 306 (470)
T ss_pred ccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCC
Confidence 999999999999999999888887643 457999999999877 7999999999999999775 9999999999752
Q ss_pred --CCCc------------------ccccc-cCceEEeeeeeeCCCchHHHHHHHHh-cCCeEEEEEcCCcccccccCceE
Q 019063 223 --EGTC------------------DNQKE-KAVAATISKYEDLPKGDEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVL 280 (346)
Q Consensus 223 --~~~c------------------~~~~~-~~~~~~i~~~~~v~~~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~ 280 (346)
.+.| +.... +...++.+--..++ .++++|++.|+ +|||-+.|.+- ++|..|++|||
T Consensus 307 ~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVS-SnE~eImkElM~NGPVQA~m~VH-EDFF~YkgGiY 384 (470)
T KOG1544|consen 307 GPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVS-SNEKEIMKELMENGPVQALMEVH-EDFFLYKGGIY 384 (470)
T ss_pred CCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeecc-CCHHHHHHHHHhCCChhhhhhhh-hhhhhhcccee
Confidence 1233 22211 11233444444555 45677777776 99999999887 89999999999
Q ss_pred eCCCC---------CCCCeEEEEEEeccCCCCCC--ccEEEEEcCCCCCcCCCceEEEEeCCCcccccccee
Q 019063 281 NADCG---------NNCDHGVAVVGFGTAEEENG--AKYWLIKNSWGETWGESGYIRILRDAGLCGIATAAS 341 (346)
Q Consensus 281 ~~~~~---------~~~~Hav~iVGyg~~~~~~g--~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~ 341 (346)
.+... ..+.|+|.|.|||.+..++| .+|||..||||+.|||+|||||.||.|+|.|++..+
T Consensus 385 ~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvI 456 (470)
T KOG1544|consen 385 SHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVI 456 (470)
T ss_pred eccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhh
Confidence 88521 25689999999998854444 579999999999999999999999999999999754
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.9e-32 Score=245.13 Aligned_cols=197 Identities=27% Similarity=0.440 Sum_probs=133.6
Q ss_pred CCCCceecccCCCCCcccCCCCCchhHHHHHHHHHHHHHHHhcCCCccCChhhhhhcCCC--CCCC-----CCCchHHHH
Q 019063 130 DVPTSIDWREKGAVTHIKDQGQCGSCWAFSAVAAVEGITQITRGKLIELSEQQLVDCSTD--NHGC-----SGGLMDKAF 202 (346)
Q Consensus 130 ~lP~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~--~~gc-----~GG~~~~a~ 202 (346)
.+|+.||||+.|.|+||||||.||+||||++++++|+.+.-.. ..++|+..+..-... ..+| +||....+.
T Consensus 98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~ 175 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSA 175 (372)
T ss_pred cchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCcccccc
Confidence 5899999999999999999999999999999999999875332 455665544322211 2222 377777777
Q ss_pred HHHHHhCCCCCCCCccccCCCCCcccccccCceEEeeeeeeCCC----chHHHHHHHHh-cCCeEEEEEcCCcccccccC
Q 019063 203 EYIIENKGLATEADYPYRHEEGTCDNQKEKAVAATISKYEDLPK----GDEQALLQAVS-NQPVSVCVDASGRAFHFYKS 277 (346)
Q Consensus 203 ~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~v~~----~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~ 277 (346)
.|+.++.|.+.|.+-||......|....+. ..++..-..++. .+.-.|++++. .|-+...|.+....+....-
T Consensus 176 a~l~e~sgpv~et~d~y~~~s~~~~~~~p~--~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~~~ 253 (372)
T COG4870 176 AYLTEWSGPVYETDDPYSENSYFSPTNLPV--TKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICI 253 (372)
T ss_pred ccccccCCcchhhcCccccccccCCcCCch--hhccccceecccchhhhcccchHHHHhhhccccceeEEeccccccccc
Confidence 788888999999999998876666543211 112222222221 12223667775 56655433332112322223
Q ss_pred ceEeCCCCCCCCeEEEEEEeccCCC-------CCCccEEEEEcCCCCCcCCCceEEEEeC
Q 019063 278 GVLNADCGNNCDHGVAVVGFGTAEE-------ENGAKYWLIKNSWGETWGESGYIRILRD 330 (346)
Q Consensus 278 Gi~~~~~~~~~~Hav~iVGyg~~~~-------~~g~~ywivkNSWG~~WG~~Gy~~i~~~ 330 (346)
+.+........+|||+||||||..+ ..|.++||||||||++||++|||||+|.
T Consensus 254 ~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ 313 (372)
T COG4870 254 PYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYY 313 (372)
T ss_pred CCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEee
Confidence 3333333367899999999998732 3467799999999999999999999997
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.90 E-value=1.2e-23 Score=202.08 Aligned_cols=179 Identities=25% Similarity=0.414 Sum_probs=126.6
Q ss_pred CcccCCCCCchhHHHHHHHHHHHHHHHh-cCCCccCChhhhhhcCC----------------------------CCCCCC
Q 019063 144 THIKDQGQCGSCWAFSAVAAVEGITQIT-RGKLIELSEQQLVDCST----------------------------DNHGCS 194 (346)
Q Consensus 144 ~pVkdQg~cGsCwAfA~~~~le~~~~~~-~~~~~~lS~q~l~dc~~----------------------------~~~gc~ 194 (346)
.||+||++-|.||.||+...+++.+..+ ....++||+.++...+. .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999987764 45679999988765210 134578
Q ss_pred CCchHHHHHHHHHhCCCCCCCCccccCC---------------------------CCC----------------------
Q 019063 195 GGLMDKAFEYIIENKGLATEADYPYRHE---------------------------EGT---------------------- 225 (346)
Q Consensus 195 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~~~---------------------- 225 (346)
||....+...+.+ +|+++++.||-+.. .+.
T Consensus 135 GGqw~m~~~li~K-YGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIEK-YGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHHH-cCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876 59999999984310 000
Q ss_pred cccccccC---------c---------------e---EEeee---------------------------------eeeCC
Q 019063 226 CDNQKEKA---------V---------------A---ATISK---------------------------------YEDLP 245 (346)
Q Consensus 226 c~~~~~~~---------~---------------~---~~i~~---------------------------------~~~v~ 245 (346)
|--.++.. . . ..... |..+
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nv- 292 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNV- 292 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEec-
Confidence 00000000 0 0 00011 1122
Q ss_pred CchHHHHH----HHHh-cCCeEEEEEcCCcccccccCceEeCC----------------------CCCCCCeEEEEEEec
Q 019063 246 KGDEQALL----QAVS-NQPVSVCVDASGRAFHFYKSGVLNAD----------------------CGNNCDHGVAVVGFG 298 (346)
Q Consensus 246 ~~~~~~i~----~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~----------------------~~~~~~Hav~iVGyg 298 (346)
..+.|+ ++|. ++||.++.++. .|..|++||++.. |.+..+|||+|||||
T Consensus 293 --p~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 293 --PMDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 234444 4566 67999999997 4678999999653 223468999999999
Q ss_pred cCCCCCCc-cEEEEEcCCCCCcCCCceEEEEeC
Q 019063 299 TAEEENGA-KYWLIKNSWGETWGESGYIRILRD 330 (346)
Q Consensus 299 ~~~~~~g~-~ywivkNSWG~~WG~~Gy~~i~~~ 330 (346)
.+ .+|+ .||+||||||+.||++||++|+++
T Consensus 369 ~D--~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LD--EDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ec--CCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 86 2465 699999999999999999999986
No 19
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.73 E-value=1.2e-17 Score=116.90 Aligned_cols=58 Identities=53% Similarity=0.832 Sum_probs=52.0
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHH
Q 019063 42 HEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEF 99 (346)
Q Consensus 42 f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsD~t~~E~ 99 (346)
|++|+++|+|.|.+.+|+.+|+.+|++|++.|.+||+.++.+|++|+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999999999999997777999999999999999997
No 20
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.67 E-value=1.8e-15 Score=145.97 Aligned_cols=179 Identities=24% Similarity=0.433 Sum_probs=104.9
Q ss_pred CcccCCCCCchhHHHHHHHHHHHHHHHhcC-CCccCChhhhh----------------hcCCC------------CCCCC
Q 019063 144 THIKDQGQCGSCWAFSAVAAVEGITQITRG-KLIELSEQQLV----------------DCSTD------------NHGCS 194 (346)
Q Consensus 144 ~pVkdQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~----------------dc~~~------------~~gc~ 194 (346)
.||.||..-|.||.||+...++..+..+.+ ...+||+.++. ++... ....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 499999999999999999999999877765 67899998875 22211 24578
Q ss_pred CCchHHHHHHHHHhCCCCCCCCccccCC----------------------------C-----------------------
Q 019063 195 GGLMDKAFEYIIENKGLATEADYPYRHE----------------------------E----------------------- 223 (346)
Q Consensus 195 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~----------------------------~----------------------- 223 (346)
||....+..-+.+. |+++.+.||-+.. .
T Consensus 136 GGqw~~~~nli~KY-GvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIKKY-GVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHHHH----BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHc-CcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877765 9999999984320 0
Q ss_pred --CCccccc-----ccCceE-Ee-----------------ee---------------------------------eeeCC
Q 019063 224 --GTCDNQK-----EKAVAA-TI-----------------SK---------------------------------YEDLP 245 (346)
Q Consensus 224 --~~c~~~~-----~~~~~~-~i-----------------~~---------------------------------~~~v~ 245 (346)
|.++..- .....+ +. .. |..+
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNv- 293 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNV- 293 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEecc-
Confidence 0000000 000000 00 01 1111
Q ss_pred CchHHHHH----HHHh-cCCeEEEEEcCCcccccccCceEeCCC----------------------CCCCCeEEEEEEec
Q 019063 246 KGDEQALL----QAVS-NQPVSVCVDASGRAFHFYKSGVLNADC----------------------GNNCDHGVAVVGFG 298 (346)
Q Consensus 246 ~~~~~~i~----~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~----------------------~~~~~Hav~iVGyg 298 (346)
..+.|+ ++|. .-||-.+-++. . +...+.||.+... .+..+|||+|||.+
T Consensus 294 --pid~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~ 369 (438)
T PF03051_consen 294 --PIDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVD 369 (438)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEE
T ss_pred --CHHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEE
Confidence 134444 4455 45999999997 4 3456889886532 02348999999999
Q ss_pred cCCCCCCc-cEEEEEcCCCCCcCCCceEEEEeC
Q 019063 299 TAEEENGA-KYWLIKNSWGETWGESGYIRILRD 330 (346)
Q Consensus 299 ~~~~~~g~-~ywivkNSWG~~WG~~Gy~~i~~~ 330 (346)
.+ .+|+ .+|+|+||||+..|.+||+.|+.+
T Consensus 370 ~D--~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 370 LD--EDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp E---TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred ec--cCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 86 3565 599999999999999999999864
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.57 E-value=3.1e-15 Score=104.27 Aligned_cols=57 Identities=49% Similarity=0.884 Sum_probs=53.9
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHH
Q 019063 42 HEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEE 98 (346)
Q Consensus 42 f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsD~t~~E 98 (346)
|++|+++|+|.|.+.+|...|+.+|.+|++.|+.||+.++.+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999999999887789999999999999876
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.78 E-value=4.2e-08 Score=89.37 Aligned_cols=76 Identities=24% Similarity=0.467 Sum_probs=53.5
Q ss_pred HHHHHHHH----h-cCCeEEEEEcCCcccccccCceEeCC-C------------C---------CCCCeEEEEEEeccCC
Q 019063 249 EQALLQAV----S-NQPVSVCVDASGRAFHFYKSGVLNAD-C------------G---------NNCDHGVAVVGFGTAE 301 (346)
Q Consensus 249 ~~~i~~al----~-~gPV~v~~~~~~~~f~~y~~Gi~~~~-~------------~---------~~~~Hav~iVGyg~~~ 301 (346)
.+.+|++. . +-+|-.+-++. -+..-+.||.+.. - . +-..|||+|.|.+.+.
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 35555543 2 44888888886 4666677776532 0 0 0126999999999773
Q ss_pred CCCC-ccEEEEEcCCCCCcCCCceEEEE
Q 019063 302 EENG-AKYWLIKNSWGETWGESGYIRIL 328 (346)
Q Consensus 302 ~~~g-~~ywivkNSWG~~WG~~Gy~~i~ 328 (346)
+| .-=|.|.||||..=|.+|||-++
T Consensus 375 --~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 375 --TGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred --CCCceeeEeecccccccCCCceEeeh
Confidence 33 33599999999999999999886
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00069 Score=62.19 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=52.5
Q ss_pred CCcccCCCCCchhHHHHHHHHHHHHHHHhcC-CCccCChhhhhhcC--------------------CC----------CC
Q 019063 143 VTHIKDQGQCGSCWAFSAVAAVEGITQITRG-KLIELSEQQLVDCS--------------------TD----------NH 191 (346)
Q Consensus 143 v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~dc~--------------------~~----------~~ 191 (346)
-+||.||.+-|-||.|+.+..+---+.++-+ ....||..+|+... .. +.
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP 141 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP 141 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence 3699999999999999999987544433322 34678887664222 11 23
Q ss_pred CCCCCchHHHHHHHHHhCCCCCCCCccc
Q 019063 192 GCSGGLMDKAFEYIIENKGLATEADYPY 219 (346)
Q Consensus 192 gc~GG~~~~a~~~~~~~~Gi~~e~~yPY 219 (346)
.-+||....-++.+++ +|+.+..+||-
T Consensus 142 ~~DGGqw~MfvNlVkK-YGviPKkcy~~ 168 (457)
T KOG4128|consen 142 VPDGGQWQMFVNLVKK-YGVIPKKCYLH 168 (457)
T ss_pred CCCCchHHHHHHHHHH-hCCCcHHhccc
Confidence 3578877777776665 59999999973
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.00 E-value=0.0078 Score=48.80 Aligned_cols=57 Identities=21% Similarity=0.451 Sum_probs=33.5
Q ss_pred chHHHHHHHHh-cCCeEEEEEcCCcccccccCceEeCCCCCCCCeEEEEEEeccCCCCCCccEEEEEcCC
Q 019063 247 GDEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWLIKNSW 315 (346)
Q Consensus 247 ~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSW 315 (346)
.+.+.|++.|. ..||++.+....... .+..+. ....+|.|+|+||+++ . +++|-.+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~---~~~~~H~vvi~Gy~~~---~---~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD---GTYGGHYVVIIGYDED---G---YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE---E-TTEEEEEEEEE-SS---E----EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC---CCcCCEEEEEEEEeCC---C---EEEEeCCC
Confidence 46788999998 569999997431111 111111 1357999999999986 2 78888877
No 25
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.89 E-value=0.012 Score=49.57 Aligned_cols=120 Identities=23% Similarity=0.365 Sum_probs=68.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHH--------HhcCCCccCChhhhhhcCCCCCCCCCCchHHHHHHHHHhCCCCCCCCccc
Q 019063 148 DQGQCGSCWAFSAVAAVEGITQ--------ITRGKLIELSEQQLVDCSTDNHGCSGGLMDKAFEYIIENKGLATEADYPY 219 (346)
Q Consensus 148 dQg~cGsCwAfA~~~~le~~~~--------~~~~~~~~lS~q~l~dc~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY 219 (346)
.||.-+-|-+||.++.|-+... +.+.-...+|+++|.++.. .+...++|.... |...
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~--------~~~~~i~y~ks~-g~~~------ 82 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL--------TPNQMIKYAKSQ-GRNP------ 82 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B---------HHHHHHHHHHT-TEEE------
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC--------CHHHHHHHHHHc-Ccch------
Confidence 5899999999999998865422 1122235688888877653 456778886553 4221
Q ss_pred cCCCCCcccccccCceEEeeeeeeCCCchHHHHHHHHh-cCCeEEEEEcCCcccccccCceEeCCCCCCCCeEEEEEEec
Q 019063 220 RHEEGTCDNQKEKAVAATISKYEDLPKGDEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFG 298 (346)
Q Consensus 220 ~~~~~~c~~~~~~~~~~~i~~~~~v~~~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg 298 (346)
.+..- ..+.+++++.+. +.|+.+..+.... ..+...+|||+||||-
T Consensus 83 --------------------~~~n~-~~s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAlavvGya 129 (175)
T PF05543_consen 83 --------------------QYNNR-MPSFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHALAVVGYA 129 (175)
T ss_dssp --------------------EEECS----HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEEEEEEEE
T ss_pred --------------------hHhcC-CCCHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeEEEEeee
Confidence 01100 024677888887 6788876554311 1224578999999997
Q ss_pred cCCCCCCccEEEEEcCCCC
Q 019063 299 TAEEENGAKYWLIKNSWGE 317 (346)
Q Consensus 299 ~~~~~~g~~ywivkNSWG~ 317 (346)
.- .+|.++.++=|=|-.
T Consensus 130 ~~--~~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 130 KP--NNGQKTYYFWNPWWN 146 (175)
T ss_dssp EE--TTSEEEEEEE-TT-S
T ss_pred ec--CCCCeEEEEeCCccC
Confidence 64 367889999888854
No 26
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.66 E-value=0.0017 Score=41.43 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=22.9
Q ss_pred HHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcCCCC
Q 019063 70 LEYIEKANKEGNRTYKLGTNEFSDLTNEEFRALYTGYNR 108 (346)
Q Consensus 70 ~~~I~~~N~~~~~s~~~g~N~fsD~t~~E~~~~~~~~~~ 108 (346)
-++|+.+|+. +.+|++|.| |.+.+.++++.+ +|..+
T Consensus 3 de~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~L-lGv~~ 38 (41)
T PF08127_consen 3 DEFIDYINSK-NTTWKAGRN-FENTSIEYIKRL-LGVLP 38 (41)
T ss_dssp HHHHHHHHHC-T-SEEE-----SSB-HHHHHHC-S-B-T
T ss_pred HHHHHHHHcC-CCcccCCCC-CCCCCHHHHHHH-cCCCC
Confidence 4689999997 699999999 899999998875 55544
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=90.62 E-value=0.7 Score=43.15 Aligned_cols=46 Identities=26% Similarity=0.419 Sum_probs=32.0
Q ss_pred HHHHHHHHhcC-CeEEEEEcCCcccccccCceEeCCCCCCCCeEEEEEEeccC
Q 019063 249 EQALLQAVSNQ-PVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTA 300 (346)
Q Consensus 249 ~~~i~~al~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~ 300 (346)
.+.|+++|..| ||.+.++.. +..|...-|. ....+|.|+|+||+++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~~---~~~~~H~i~v~G~d~~ 124 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYYK---KHHADHYIVVYGYDEE 124 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCccccc---cccCCcEEEEEEEeCC
Confidence 45678888865 999998776 3344433221 2346899999999975
No 28
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=84.82 E-value=13 Score=31.14 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=28.7
Q ss_pred hHHHHHHHHh-cCCeEEEEEcCCcccccccCceEeCCCCCCCCeEEEEEEeccC
Q 019063 248 DEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTA 300 (346)
Q Consensus 248 ~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~ 300 (346)
+.+.+...|. +||+-++..... +....|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~---------------~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPG---------------DSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC---------------CcceeeEEEEEeecCC
Confidence 5678888897 899999865542 1234799999998765
No 29
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=81.33 E-value=5.9 Score=34.91 Aligned_cols=59 Identities=27% Similarity=0.447 Sum_probs=35.7
Q ss_pred hHHHHHHHHh-cCCeEEEEEcCCcccc--cccCceEeC---CC----CCCCCeEEEEEEeccCCCCCCccEEEEEc
Q 019063 248 DEQALLQAVS-NQPVSVCVDASGRAFH--FYKSGVLNA---DC----GNNCDHGVAVVGFGTAEEENGAKYWLIKN 313 (346)
Q Consensus 248 ~~~~i~~al~-~gPV~v~~~~~~~~f~--~y~~Gi~~~---~~----~~~~~Hav~iVGyg~~~~~~g~~ywivkN 313 (346)
+.++|...|. +||+++-++..- .. .-+.-.... .| ....+|-|+|+||+.. .+ -++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~~--L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~---~~--~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDASL--LHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA---TK--EFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEcccc--ccChhhcccccccccccccCCCCCccEEEEEEEeecCC---CC--eEEEeC
Confidence 4688888887 667777777651 11 002222211 11 2356999999999986 22 366666
No 30
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.49 E-value=5.5 Score=33.98 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=37.7
Q ss_pred eeCCCchHHHHHHHHh-cCCeEEEEEcCCcccccccCceEeCCCCCCCCeEEEEEEeccCCCCCCccEEEEEcCCC
Q 019063 242 EDLPKGDEQALLQAVS-NQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWLIKNSWG 316 (346)
Q Consensus 242 ~~v~~~~~~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG 316 (346)
..++..+..+|+..|. ..||.+-... |.. ..-|+|+|+|||+. ++..-++||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk~-------n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDKY-------NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeeccccc-------ceEeccccc
Confidence 3456678999999987 6799876543 222 24699999999975 466677775
No 31
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=76.39 E-value=8.2 Score=36.19 Aligned_cols=29 Identities=24% Similarity=0.555 Sum_probs=23.6
Q ss_pred CCeEEEEEEeccCCCCCCccEEEEEcCCCC
Q 019063 288 CDHGVAVVGFGTAEEENGAKYWLIKNSWGE 317 (346)
Q Consensus 288 ~~Hav~iVGyg~~~~~~g~~ywivkNSWG~ 317 (346)
.+||-.|++...... .|.+...+||-||.
T Consensus 235 ~~HaY~Vl~~~~~~~-~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREVQE-EGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEEcc-CceEEEEecCCccC
Confidence 589999999987511 27889999999995
No 32
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=67.63 E-value=19 Score=28.73 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=29.2
Q ss_pred HHHHHh-cCCeEEEEEcCCcccccccCceEeCCCCCCCCeEEEEEEeccCCCCCCccEEEEEcCC
Q 019063 252 LLQAVS-NQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWLIKNSW 315 (346)
Q Consensus 252 i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSW 315 (346)
+++.+. ..||++.++.. ......+|.|+|+||+.+ +..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------------~~~~~~gH~vVv~g~~~~------~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------------VSITPSGHAMVVIGYDRK------GNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------------cccCCCCeEEEEEEEcCC------CCEEEECCC
Confidence 677777 67999987651 011336899999999821 125666665
No 33
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=53.49 E-value=8.2 Score=29.47 Aligned_cols=6 Identities=33% Similarity=0.949 Sum_probs=3.5
Q ss_pred chhhhH
Q 019063 6 EKSFII 11 (346)
Q Consensus 6 ~~~~~~ 11 (346)
||.+|+
T Consensus 3 SK~~ll 8 (95)
T PF07172_consen 3 SKAFLL 8 (95)
T ss_pred hhHHHH
Confidence 566555
No 34
>PF15240 Pro-rich: Proline-rich
Probab=38.93 E-value=20 Score=30.68 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhh
Q 019063 13 MFVIIILVITCAS 25 (346)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (346)
|+|+||.++|+|.
T Consensus 1 MLlVLLSvALLAL 13 (179)
T PF15240_consen 1 MLLVLLSVALLAL 13 (179)
T ss_pred ChhHHHHHHHHHh
Confidence 4555555555444
No 35
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=38.31 E-value=1.4e+02 Score=25.60 Aligned_cols=49 Identities=24% Similarity=0.674 Sum_probs=29.1
Q ss_pred HHHHHHHh-cCCeEEEEEcCCcccccccCceEeCCCCCCCCeEEEEEEeccCCCCCCccEEEEEcCCCCCcC--CCceEE
Q 019063 250 QALLQAVS-NQPVSVCVDASGRAFHFYKSGVLNADCGNNCDHGVAVVGFGTAEEENGAKYWLIKNSWGETWG--ESGYIR 326 (346)
Q Consensus 250 ~~i~~al~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG--~~Gy~~ 326 (346)
+.|+..|. ..||.+.-... ..+||.+|=||..+ .||-+= || || .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~------------------~~GHawViDGy~~~------~~~H~N--wG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK------------------SGGHAWVIDGYDSD------GYFHCN--WG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET------------------TEEEEEEEEEEESS------SEEEEE---S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC------------------CCCeEEEEcCccCC------CeEEEe--eC--ccCCCCCccC
Confidence 45667776 67998764332 11899999999653 466543 65 54 568885
No 36
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.64 E-value=1.6e+02 Score=21.01 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Q 019063 40 EKHEQWMAQHGRTYKDELEKAMRLNIFKQNLE 71 (346)
Q Consensus 40 ~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~ 71 (346)
..|++|...|++.-.++ |..+|..-|++-++
T Consensus 29 e~Fee~v~~~krel~pp-e~~~~~EE~~~~lR 59 (77)
T KOG4702|consen 29 EIFEEFVRGYKRELSPP-EATKRKEEYENFLR 59 (77)
T ss_pred HHHHHHHHhccccCCCh-HHHhhHHHHHHHHH
Confidence 48999999999998654 77777777766554
No 37
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=32.64 E-value=68 Score=30.13 Aligned_cols=27 Identities=22% Similarity=0.558 Sum_probs=21.5
Q ss_pred CCeEEEEEEeccCCCCCCcc--EEEEEcCCCC
Q 019063 288 CDHGVAVVGFGTAEEENGAK--YWLIKNSWGE 317 (346)
Q Consensus 288 ~~Hav~iVGyg~~~~~~g~~--ywivkNSWG~ 317 (346)
.+||=.|++...- ++.+ -..+||-||.
T Consensus 227 ~~HaYsVl~v~~~---~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVREV---QGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEEEE---ecCCeEEEEEECCCCC
Confidence 5899999998765 4444 8999999983
No 38
>CHL00024 psbI photosystem II protein I
Probab=31.05 E-value=26 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.193 Sum_probs=18.8
Q ss_pred ccccchhhhHHHHHHHHHHHHHhh
Q 019063 2 VLKFEKSFIIPMFVIIILVITCAS 25 (346)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (346)
.|++..+.++++++.|+++...+.
T Consensus 3 ~LKi~Vy~vV~ffvsLFifGFlsn 26 (36)
T CHL00024 3 TLKLFVYTVVIFFVSLFIFGFLSN 26 (36)
T ss_pred eEEeeehhHHHHHHHHHHccccCC
Confidence 477888888888888888877654
No 39
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=30.72 E-value=18 Score=22.20 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=18.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHhh
Q 019063 2 VLKFEKSFIIPMFVIIILVITCAS 25 (346)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (346)
.|++..+.++++++.|+++...+.
T Consensus 3 tLKi~Vy~vV~ffvsLFiFGflsn 26 (38)
T PRK02655 3 ALKISVYIVVFFFVGLFVFGFLSS 26 (38)
T ss_pred eEEeeehhhHHHHHHHHHcccCCC
Confidence 477888888888888888877654
No 40
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.63 E-value=61 Score=21.59 Aligned_cols=23 Identities=17% Similarity=0.194 Sum_probs=11.1
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhh
Q 019063 2 VLKFEKSFIIPMFVIIILVITCASQ 26 (346)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (346)
+.-+..+++++|.+| .+++|.++
T Consensus 2 ~~~~iV~i~iv~~lL--g~~I~~~~ 24 (50)
T PF12606_consen 2 IAFLIVSIFIVMGLL--GLSICTTL 24 (50)
T ss_pred eehHHHHHHHHHHHH--HHHHHHHh
Confidence 334444555544444 55556553
No 41
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=28.04 E-value=75 Score=19.43 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=18.2
Q ss_pred ccccchhhhHHHHHHHHHHHHHhh
Q 019063 2 VLKFEKSFIIPMFVIIILVITCAS 25 (346)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (346)
.|++....++++++.|+++.....
T Consensus 3 ~LK~~Vy~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 3 TLKIFVYTVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeehhhHHHHHHHHhccccCC
Confidence 367777888888888888877654
No 42
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=26.60 E-value=1.2e+02 Score=22.53 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 019063 56 ELEKAMRLNIFKQNLE 71 (346)
Q Consensus 56 ~~e~~~r~~~f~~n~~ 71 (346)
..|..+|.+.|.+|+.
T Consensus 67 ~~~~~~~~~~~l~Nld 82 (84)
T PF06143_consen 67 RAERQQREKTYLANLD 82 (84)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4566677777777764
No 43
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=22.69 E-value=50 Score=21.56 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=12.5
Q ss_pred chhhhHHHHHHHHHHHHHh
Q 019063 6 EKSFIIPMFVIIILVITCA 24 (346)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (346)
=||+++++|+=++.|++|-
T Consensus 4 KKsllLlfflG~ISlSlCe 22 (46)
T PF03032_consen 4 KKSLLLLFFLGTISLSLCE 22 (46)
T ss_pred hHHHHHHHHHHHcccchHH
Confidence 4677776666666677773
No 44
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=22.08 E-value=71 Score=22.46 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHhhh
Q 019063 10 IIPMFVIIILVITCASQ 26 (346)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (346)
.+++++.|.++.++||+
T Consensus 5 Si~VLlaLvLIg~fAVq 21 (71)
T PF04202_consen 5 SIAVLLALVLIGSFAVQ 21 (71)
T ss_pred hHHHHHHHHHHhhheee
Confidence 34444444455566765
No 45
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=21.88 E-value=89 Score=24.56 Aligned_cols=34 Identities=9% Similarity=0.203 Sum_probs=25.8
Q ss_pred CCCCchhHHHHHHHHHHHhCCccCCHHHHHHHHH
Q 019063 31 RSMHEPSIVEKHEQWMAQHGRTYKDELEKAMRLN 64 (346)
Q Consensus 31 ~~~~~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~ 64 (346)
-..+..-+..+.+.|...+|+.|-..-|+..+..
T Consensus 75 ~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~ 108 (115)
T PF14663_consen 75 YLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEA 108 (115)
T ss_pred HhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444566789999999999999987777765443
No 46
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.94 E-value=60 Score=27.22 Aligned_cols=16 Identities=38% Similarity=0.933 Sum_probs=10.6
Q ss_pred cccCCCCCc--hhHHHHH
Q 019063 145 HIKDQGQCG--SCWAFSA 160 (346)
Q Consensus 145 pVkdQg~cG--sCwAfA~ 160 (346)
|-.|=|.|| +|.|||.
T Consensus 135 P~tNCg~CGEqtCmaFAi 152 (193)
T COG4871 135 PQTNCGKCGEQTCMAFAI 152 (193)
T ss_pred CCCccccchhHHHHHHHH
Confidence 334566676 7899864
No 47
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=20.75 E-value=3.3e+02 Score=22.08 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=46.2
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHhCCc-cCCHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 019063 4 KFEKSFIIPMFVIIILVITCASQVVSGRSMHEPSIVEKHEQWMAQHGRT-YKDELEKAMRLNIFKQNLEYIEKANKEGNR 82 (346)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~-Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~ 82 (346)
.++|+.+..|-.+..+....++-+-..-.-........++++-.+.--- .-..++..+-++.+++|+++=.++-..- .
T Consensus 27 ~~pk~~~Sg~t~~aa~~gatayG~~~~~~~~kk~rr~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~eeEaeiMKdV-P 105 (146)
T KOG3300|consen 27 RIPKTGPSGMTMFAAVSGATAYGMYQVGQGNKKRRRLKIEDYAARNAILPILQAERDRRFLSELRKNLEEEAEIMKDV-P 105 (146)
T ss_pred cCCccCCCcchhhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHccC-C
Confidence 3567777767666655555554222222222333344555555442111 1122233333456788888766666543 6
Q ss_pred ceEEEcccCC
Q 019063 83 TYKLGTNEFS 92 (346)
Q Consensus 83 s~~~g~N~fs 92 (346)
.|+.|.+-|-
T Consensus 106 gWkvGEpVy~ 115 (146)
T KOG3300|consen 106 GWKVGEPVYN 115 (146)
T ss_pred CcccCcccee
Confidence 8999977663
Done!