Query 019064
Match_columns 346
No_of_seqs 254 out of 2285
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 10:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 9.1E-23 3.1E-27 201.6 16.6 295 11-342 8-331 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 4.9E-20 1.7E-24 180.4 20.7 190 8-220 6-200 (491)
3 3o7q_A L-fucose-proton symport 99.7 5.6E-15 1.9E-19 141.8 20.4 180 11-214 22-227 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.6 6.7E-15 2.3E-19 141.7 12.7 175 14-213 27-203 (451)
5 2gfp_A EMRD, multidrug resista 99.5 3.7E-14 1.3E-18 133.6 12.6 167 18-211 3-169 (375)
6 1pw4_A Glycerol-3-phosphate tr 99.4 2.4E-12 8.3E-17 123.7 17.3 178 14-215 251-432 (451)
7 3o7q_A L-fucose-proton symport 99.3 4.4E-11 1.5E-15 114.5 17.0 170 14-212 257-428 (438)
8 4gc0_A D-xylose-proton symport 99.3 6.5E-11 2.2E-15 115.3 15.0 151 50-208 54-212 (491)
9 2cfq_A Lactose permease; trans 99.2 1.2E-10 4.2E-15 111.7 12.1 175 15-215 220-398 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.1 6.3E-10 2.2E-14 108.3 12.1 186 16-219 284-474 (491)
11 2cfq_A Lactose permease; trans 99.0 1E-11 3.4E-16 119.4 -2.2 172 14-206 6-177 (417)
12 4gc0_A D-xylose-proton symport 98.8 9E-08 3.1E-12 92.9 17.6 171 25-217 287-463 (491)
13 2gfp_A EMRD, multidrug resista 98.7 8.7E-09 3E-13 96.6 4.2 164 15-203 199-363 (375)
14 2xut_A Proton/peptide symporte 97.8 1.3E-05 4.5E-10 78.3 5.2 120 83-218 374-504 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=9.1e-23 Score=201.65 Aligned_cols=295 Identities=16% Similarity=0.237 Sum_probs=204.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhHHHHHHHcccccC------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q 019064 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMH------FDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFAT 84 (346)
Q Consensus 11 ~~~~~~~~~i~~~~~~e~~a~ygv~~~l~~yl~~~lg------~s~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~ 84 (346)
+.++|.++.+++..+++++++|++...++.|+++++| ++..+++.+.+.+.....++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4567788899999999999999999999999999999 9999999999999999999999999999995599999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhh
Q 019064 85 CLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKAL 164 (346)
Q Consensus 85 i~~~~~l~~~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~ 164 (346)
+.++.++..++.+++.++. .+.+.+++++++.|+|.|...++..++++|.+++++. ...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~ 146 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLA 146 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THH
T ss_pred HHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHH
Confidence 9999999999887776542 0356788899999999999999999999999996552 224
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHhcCccceecCCCCCcchhHHHHHHHHHHhc
Q 019064 165 ASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFYRIQQPGESPLVRVAQVIVVAIKNR 244 (346)
Q Consensus 165 ~~~f~~~y~~~niG~~i~~~~~~~i~~~~g~~~~f~i~~~~~~~~~~i~~~~~~~~~~~~p~gs~l~~i~~v~~~a~~~~ 244 (346)
.+.+++++...++|.++++.+.+++.+..||++.|.+.+++.+++.++++..++++++++|++++..+..+.+..+.|++
T Consensus 147 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (524)
T 2xut_A 147 QKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTK 226 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhh
Confidence 67888899999999999999999999889999999998888777777666665555544555444445555555555554
Q ss_pred cCCCCCCCchhhhhhh-hcccCCccccCCCC--------------------cccc--ccccccccCCCCCCCCcccCCch
Q 019064 245 KLSLPDNPEELYEINK-IERVGTEERIPHTN--------------------QFRC--LDKAAIVPKDSTAAAPWRVCTVT 301 (346)
Q Consensus 245 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------------~~~~--ld~a~~~~~~~~~~~~w~~~~~~ 301 (346)
+.+. ++.....+... .... ....+.+ +..| +|+++. .++++
T Consensus 227 ~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 290 (524)
T 2xut_A 227 VEGK-GNIGLVLALIGGVSAA---YALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK------------SHPDA 290 (524)
T ss_dssp CTTH-HHHHHHHHHHHHHHHH---HTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCC------------SCCSS
T ss_pred hccc-Cccchhhhhhhhhhhh---hhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhc------------cccHh
Confidence 3210 00000000000 0000 0000000 0123 333321 13344
Q ss_pred hHHHHHHHHhHhHHHhhhHHHHHHHhcccchhhhccccccC
Q 019064 302 QVEEVKILARMMPILASTIIMNTCLAQLQTLSDTPQESHSF 342 (346)
Q Consensus 302 ~Ve~vK~~~r~lpi~~~~i~~~~~~~q~~t~~~~Q~~~m~~ 342 (346)
++++.|.+++.+++++...+++..+.|..+.+..|+..++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK 331 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCC
Confidence 56677888899999999999999999999988888776654
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.85 E-value=4.9e-20 Score=180.42 Aligned_cols=190 Identities=19% Similarity=0.317 Sum_probs=163.2
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHhHHHHHHHcccc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 019064 8 IKQKGGFRACTFVFVLSALENMGFIANGISMVLYFKNE-----MHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRF 82 (346)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~e~~a~ygv~~~l~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~ 82 (346)
+..++++|..+.+++..+++++++|++...++.|++++ +|++..+++.+.+.+.....++.+++|+++||++|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r 85 (491)
T 4aps_A 6 KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR 85 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 34456788999999999999999999999999999988 9999999999999999999999999999999944999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhh
Q 019064 83 ATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAK 162 (346)
Q Consensus 83 ~~i~~~~~l~~~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~ 162 (346)
+++.++.++..++.+++.++. +.+.+++++++.|+|.|+..++..++++|.+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~---- 142 (491)
T 4aps_A 86 PAVFWGGVLIMLGHIVLALPF-------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR---- 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----
Confidence 999999999999987776532 346788899999999999999999999999997653
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHhcCccc
Q 019064 163 ALASYFNFYLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPFY 220 (346)
Q Consensus 163 ~~~~~f~~~y~~~niG~~i~~~~~~~i~~~~g~~~~f~i~~~~~~~~~~i~~~~~~~~ 220 (346)
.|...+++++...++|..+++.+++++.++.||++.|.+.++..+++.++++...+++
T Consensus 143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 2577888899999999999999999999999999999998887777776665554443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.66 E-value=5.6e-15 Score=141.82 Aligned_cols=180 Identities=14% Similarity=0.056 Sum_probs=145.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q 019064 11 KGGFRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGT 90 (346)
Q Consensus 11 ~~~~~~~~~i~~~~~~e~~a~ygv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~i~~~~~ 90 (346)
+.+++....+....++..+.+..+... ..++.+++|.+..+.+.+.+.+.....++.+++|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 345666677777777777777654444 4457778999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHH
Q 019064 91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF 170 (346)
Q Consensus 91 l~~~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~ 170 (346)
+..++.+++...... .+.+.+++++++.|+|.|...+...++++|.+++++ |...+++
T Consensus 100 ~~~~~~~~~~~~~~~----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 157 (438)
T 3o7q_A 100 LYALGAALFWPAAEI----------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNL 157 (438)
T ss_dssp HHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHH
T ss_pred HHHHHHHHHHhcccc----------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHH
Confidence 999998887443221 147888999999999999999999999999998655 5677888
Q ss_pred HHHHHHHHHHHHHhhhhhhh-hccc-------------------------hhHHHHHHHHHHHHHHHHHH
Q 019064 171 YLFATTLAAMIGVTAIVYVF-IDQG-------------------------WWLGFLISSVATLIGLIALA 214 (346)
Q Consensus 171 ~y~~~niG~~i~~~~~~~i~-~~~g-------------------------~~~~f~i~~~~~~~~~~i~~ 214 (346)
+....++|.++++.+++++. +..+ |++.|.+.++..++..++++
T Consensus 158 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 158 AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998887 5544 89999776665544444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.59 E-value=6.7e-15 Score=141.66 Aligned_cols=175 Identities=9% Similarity=0.025 Sum_probs=142.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Q 019064 14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (346)
Q Consensus 14 ~~~~~~i~~~~~~e~~a~ygv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~i~~~~~l~~ 93 (346)
++.++.+.+..++..+..+.....++.+. +++ .+..+.+.+.+.+.....++.+++|+++||+ |||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 45566666777777777666666666554 567 9999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHhhhc-cCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHHHH
Q 019064 94 LSLVMLTIQAY-SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (346)
Q Consensus 94 ~G~~ll~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~~y 172 (346)
++.+++.+... .+ +.+.+++++++.|+|.+...+...++++|.+++++ |...++++.
T Consensus 104 ~~~~~~~~~~~~~~----------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~ 161 (451)
T 1pw4_A 104 AVMLFMGFVPWATS----------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWN 161 (451)
T ss_dssp HHHHHHHHCHHHHS----------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHH
T ss_pred HHHHHHHhhhhccc----------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHH
Confidence 99888776210 01 34568888999999999999999999999998543 678888889
Q ss_pred HHHHHHHHHHHhhhhhhhhccc-hhHHHHHHHHHHHHHHHHH
Q 019064 173 FATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIAL 213 (346)
Q Consensus 173 ~~~niG~~i~~~~~~~i~~~~g-~~~~f~i~~~~~~~~~~i~ 213 (346)
...++|.++++.+++++.+..| |++.|.+.++..++..++.
T Consensus 162 ~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~ 203 (451)
T 1pw4_A 162 CAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 203 (451)
T ss_dssp HHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888 9999998877665554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.54 E-value=3.7e-14 Score=133.63 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 019064 18 TFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLV 97 (346)
Q Consensus 18 ~~i~~~~~~e~~a~ygv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~i~~~~~l~~~G~~ 97 (346)
..++...++..+........++. +.+++|.+..+.+.+.+.+.....++.++.|+++||+ |||+++.++..+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 44556667777777666666665 4567999999999999999999999999999999996 999999999999999888
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHHHHHHHHH
Q 019064 98 MLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTL 177 (346)
Q Consensus 98 ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~~y~~~ni 177 (346)
++.... +.+.+++++++.+++.+...+...++..|.+++++ |.+.++++....++
T Consensus 81 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 81 VAVTTS-------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV 135 (375)
T ss_dssp HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 777653 46778889999999999999999999999998654 57788888899999
Q ss_pred HHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 019064 178 AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLI 211 (346)
Q Consensus 178 G~~i~~~~~~~i~~~~g~~~~f~i~~~~~~~~~~ 211 (346)
|..+++.+.+++.+..||+..|.+.++..++..+
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999888999999987776655554
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=2.4e-12 Score=123.67 Aligned_cols=178 Identities=12% Similarity=0.067 Sum_probs=147.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHH
Q 019064 14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYL--SRFATCLVFGTL 91 (346)
Q Consensus 14 ~~~~~~i~~~~~~e~~a~ygv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~llgG~laD~~l--GR~~~i~~~~~l 91 (346)
.+..+.+++..++..++++++..+++.|+++.+|++..+++.+...+.+...++.++.|+++|| + ||++.+.++..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3677888888999999999999999999999999999999999999999999999999999999 5 899888877766
Q ss_pred HH-HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHH
Q 019064 92 EV-LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF 170 (346)
Q Consensus 92 ~~-~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~ 170 (346)
.. ++.+++.+. + ..+.+.+.+.+++.+++.++..+...++..|.++++. ++..++.
T Consensus 330 ~~~~~~~~~~~~---~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 386 (451)
T 1pw4_A 330 LVTIATIVYWMN---P--------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF 386 (451)
T ss_dssp HHHHHHHHTTSC---C--------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHH
T ss_pred HHHHHHHHHHHh---c--------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHH
Confidence 65 555444332 1 1135667777888899988888888899999998643 6788888
Q ss_pred HHHHHHH-HHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 019064 171 YLFATTL-AAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (346)
Q Consensus 171 ~y~~~ni-G~~i~~~~~~~i~~~~g~~~~f~i~~~~~~~~~~i~~~ 215 (346)
++...++ |..+++.+.+++.+..||...|.+.+++.+++.++.+.
T Consensus 387 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 387 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 8889999 99999999999999999999999888777766665544
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.31 E-value=4.4e-11 Score=114.45 Aligned_cols=170 Identities=14% Similarity=0.055 Sum_probs=134.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHH-cccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 019064 14 FRACTFVFVLSALENMGFIANGISMVLY-FKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLE 92 (346)
Q Consensus 14 ~~~~~~i~~~~~~e~~a~ygv~~~l~~y-l~~~lg~s~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~i~~~~~l~ 92 (346)
.|..+..++..++...+++++..+++.| +++.+|++..+++.....+.....++.+++|+++||+ ||++++.++.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3567777788888888899999999999 8888899999999999999999999999999999995 9999999998888
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHHHH
Q 019064 93 VLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYL 172 (346)
Q Consensus 93 ~~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~~y 172 (346)
.++.+++.... +.. ..+.+.+.+++.+...+...++..|.++++ +.....+..
T Consensus 336 ~~~~~~~~~~~-------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 388 (438)
T 3o7q_A 336 MALCLISAFAG-------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHHHCC-------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH
T ss_pred HHHHHHHHHcC-------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH
Confidence 77766655431 122 344557788999999999999989998843 122222222
Q ss_pred HHHHHHHHHHHhhhhhhhhccc-hhHHHHHHHHHHHHHHHH
Q 019064 173 FATTLAAMIGVTAIVYVFIDQG-WWLGFLISSVATLIGLIA 212 (346)
Q Consensus 173 ~~~niG~~i~~~~~~~i~~~~g-~~~~f~i~~~~~~~~~~i 212 (346)
..++|..+++.+.+++.+..| ++.+|.+++++.++..+.
T Consensus 389 -~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 389 -MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 466999999999999999888 999998876665554443
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.26 E-value=6.5e-11 Score=115.27 Aligned_cols=151 Identities=14% Similarity=0.119 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHH
Q 019064 50 IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYG 129 (346)
Q Consensus 50 ~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~i~~~~~l~~~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 129 (346)
....+++.+.+..+..++++++|+++||+ |||+++.++.+++.++.++...+........... .....-..+.+.+++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-TVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-SCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-HHHHHHhhhHHHHHH
Confidence 34456777888889999999999999996 9999999999999999887765321000000000 000000346788999
Q ss_pred HHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhc--------cchhHHHHH
Q 019064 130 SLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVTAIVYVFID--------QGWWLGFLI 201 (346)
Q Consensus 130 ~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~~y~~~niG~~i~~~~~~~i~~~--------~g~~~~f~i 201 (346)
++++.|+|.|+..+..+.+++|..|++. |.....++..+..+|.+++..+...+... .+|+..+.+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFAS 205 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhh
Confidence 9999999999999999999999998543 56666777777888888777665544332 346666655
Q ss_pred HHHHHHH
Q 019064 202 SSVATLI 208 (346)
Q Consensus 202 ~~~~~~~ 208 (346)
..+..++
T Consensus 206 ~~~~~~~ 212 (491)
T 4gc0_A 206 ECIPALL 212 (491)
T ss_dssp THHHHHH
T ss_pred hhhhhhh
Confidence 5444333
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.17 E-value=1.2e-10 Score=111.71 Aligned_cols=175 Identities=10% Similarity=-0.040 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHcccccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 019064 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFD---IAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL 91 (346)
Q Consensus 15 ~~~~~i~~~~~~e~~a~ygv~~~l~~yl~~~lg~s---~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~i~~~~~l 91 (346)
|..+..++..++....++.....++.|+.+.++.. ....+...........++.+++|+++||+ ||++++.++..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 34444444444445566666667888887666532 23334444445556677888999999996 999999888877
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHH-
Q 019064 92 EVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF- 170 (346)
Q Consensus 92 ~~~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~- 170 (346)
..++.+++.+. + +.+.+++...+.+++.+...+...++.+|.+|++. +++.+.+
T Consensus 299 ~~~~~~~~~~~---~----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 353 (417)
T 2cfq_A 299 MSVRIIGSSFA---T----------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVC 353 (417)
T ss_dssp HHHHHHHHTTC---C----------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHH
T ss_pred HHHHHHHHHHh---c----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHH
Confidence 77765444321 1 23445555556666666666667788899988422 4565666
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 019064 171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAI 215 (346)
Q Consensus 171 ~y~~~niG~~i~~~~~~~i~~~~g~~~~f~i~~~~~~~~~~i~~~ 215 (346)
+....++|+.+++.+.+++.+..|+...|.+.+++.+++.++.+.
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 355677999999999999988889888998877777666665443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.07 E-value=6.3e-10 Score=108.33 Aligned_cols=186 Identities=9% Similarity=-0.032 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHH-----HHHH
Q 019064 16 ACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCL-----VFGT 90 (346)
Q Consensus 16 ~~~~i~~~~~~e~~a~ygv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~i~-----~~~~ 90 (346)
..+.+++..++....+......++.|+.+.++.+..+++...........++.++.|+++||+ |||+... ++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 345555566666777777888889999988888867777777777888888889999999995 9876544 6666
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHH
Q 019064 91 LEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNF 170 (346)
Q Consensus 91 l~~~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~ 170 (346)
+..++.+++.......... ...+.+.+.+...+.++|.+...+...++..|.+|++. ++...+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 426 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTS----------GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSM 426 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCC----------TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHH
T ss_pred HHHHHHHHHHHHHHhcCCC----------CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHH
Confidence 6666666555432111000 12245667778888999999999999999999999765 5677777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 019064 171 YLFATTLAAMIGVTAIVYVFIDQGWWLGFLISSVATLIGLIALAIGKPF 219 (346)
Q Consensus 171 ~y~~~niG~~i~~~~~~~i~~~~g~~~~f~i~~~~~~~~~~i~~~~~~~ 219 (346)
++...++|..+++.+.+++.+ .++...|.+.+++.+++.++++...++
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999988876 467777877776666666655554443
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.04 E-value=1e-11 Score=119.37 Aligned_cols=172 Identities=9% Similarity=-0.054 Sum_probs=110.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Q 019064 14 FRACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEV 93 (346)
Q Consensus 14 ~~~~~~i~~~~~~e~~a~ygv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~i~~~~~l~~ 93 (346)
.|..+.+....++..+++..+.+.++.|+++++|++..+++.+.+.+.....++.+++|+++||+ |||+++.++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 45666677777777777777888999999999999999999999999999999999999999996 99999998887765
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHHHHH
Q 019064 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (346)
Q Consensus 94 ~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~~y~ 173 (346)
++...+......+.. ...+..++.+.+++.|...+...+...+..++. + +.+...+.....
T Consensus 85 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~---~~~~~~~g~~~~ 145 (417)
T 2cfq_A 85 VMFAPFFIFIFGPLL---------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-S---RRSNFEFGRARM 145 (417)
T ss_dssp SCHHHHHHHTHHHHH---------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-H---HHHTCCHHHHSS
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-h---hhcccchHHHHH
Confidence 532211111100000 000122233333333333333333332222111 1 112333444455
Q ss_pred HHHHHHHHHHhhhhhhhhccchhHHHHHHHHHH
Q 019064 174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISSVAT 206 (346)
Q Consensus 174 ~~niG~~i~~~~~~~i~~~~g~~~~f~i~~~~~ 206 (346)
..++|..+++.+++++.+ .+|+..|.+.++..
T Consensus 146 ~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 146 FGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp STTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 678899999999888876 58998887665543
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.85 E-value=9e-08 Score=92.89 Aligned_cols=171 Identities=9% Similarity=-0.081 Sum_probs=108.9
Q ss_pred HHHHHHHHHhHHHHHHHcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhhc
Q 019064 25 ALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTLEVLSLVMLTIQAY 104 (346)
Q Consensus 25 ~~e~~a~ygv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~i~~~~~l~~~G~~ll~l~~~ 104 (346)
+..-.+++.+..+ ..++.+..+.+..+.............++.++++++.||+ |||+.++.+.....++.+.+.....
T Consensus 287 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 287 FQQFVGINVVLYY-APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHTCHHHHHHH-HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhc-chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHh
Confidence 3333344444444 4455556777777777666677778888999999999996 9999999998888887766655432
Q ss_pred cCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019064 105 SKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLFATTLAAMIGVT 184 (346)
Q Consensus 105 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~~y~~~niG~~i~~~ 184 (346)
.. . ........+.++..+.+ .+..+....+.+|.||.+- |....++.+...++|+.+++.
T Consensus 365 -~~-~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~ 424 (491)
T 4gc0_A 365 -TQ-A-----------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSW 424 (491)
T ss_dssp -TT-C-----------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHT
T ss_pred -cc-c-----------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 11112222222222222 2334566688899999765 677777777788888888888
Q ss_pred hhhhhhhc------cchhHHHHHHHHHHHHHHHHHHhcC
Q 019064 185 AIVYVFID------QGWWLGFLISSVATLIGLIALAIGK 217 (346)
Q Consensus 185 ~~~~i~~~------~g~~~~f~i~~~~~~~~~~i~~~~~ 217 (346)
+.+++.+. .++...|.+.+++.+++.++.++..
T Consensus 425 ~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 425 TFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp HHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 77776542 3555667776666666665544433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.68 E-value=8.7e-09 Score=96.62 Aligned_cols=164 Identities=9% Similarity=-0.057 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH-HH
Q 019064 15 RACTFVFVLSALENMGFIANGISMVLYFKNEMHFDIAGASNTLTNFFGSTFLLCLVGGFISDTYLSRFATCLVFGTL-EV 93 (346)
Q Consensus 15 ~~~~~i~~~~~~e~~a~ygv~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~llgG~laD~~lGR~~~i~~~~~l-~~ 93 (346)
|..+..++..++...+++++..+++.|+++.+|++..+++.+.........++.++.|+++||+ || + +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~-~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-L-MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-H-HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHHHHHHHH
Confidence 5567777888888999999999999999988999999999999888888889999999999995 77 2 2333322 22
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhhhhhhHHHHHHH
Q 019064 94 LSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAKALASYFNFYLF 173 (346)
Q Consensus 94 ~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~~~~~~f~~~y~ 173 (346)
.+..++..... + ..+.+.+++...+.+++.+...+...++..|.+| + .+++.++.+..
T Consensus 276 ~~~~~~~~~~~-~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~------~~g~~~g~~~~ 333 (375)
T 2gfp_A 276 AGLLMWIPDWF-G--------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F------LAGTAGALVGG 333 (375)
T ss_dssp TSSSSSHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H------HHHHHHHHHHH
T ss_pred HHHHHHHHhhh-c--------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c------ccchHHHHHHH
Confidence 23222111110 0 1145566677888899999999999999999875 2 25778888888
Q ss_pred HHHHHHHHHHhhhhhhhhccchhHHHHHHH
Q 019064 174 ATTLAAMIGVTAIVYVFIDQGWWLGFLISS 203 (346)
Q Consensus 174 ~~niG~~i~~~~~~~i~~~~g~~~~f~i~~ 203 (346)
..++|..+++.+.+++.+..+|...+.+.+
T Consensus 334 ~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 334 LQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 899999999999999888777877776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.82 E-value=1.3e-05 Score=78.32 Aligned_cols=120 Identities=11% Similarity=-0.028 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccccchhhhccCCCCCCChhhhh
Q 019064 83 ATCLVFGTLEVLSLVMLTIQAYSKSLHPPDCGKSSCLKGAIAAYFYGSLYLYSLGCGGNRGTLPALGAGQFDENDPKGAK 162 (346)
Q Consensus 83 ~~i~~~~~l~~~G~~ll~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iG~g~~~~~~~a~~adq~~~~~~~~~~ 162 (346)
+.+.++.++..++.+++.+.. ...+. ....+.+.+.++.++.++|.+...+...++..|..|++.
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~----- 438 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQ---LMMDG-------GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM----- 438 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTT---TTTTT-------TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhcC-------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-----
Confidence 455566666666655544321 10000 001245567778888999999999999999999998654
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhcc--ch---------hHHHHHHHHHHHHHHHHHHhcCc
Q 019064 163 ALASYFNFYLFATTLAAMIGVTAIVYVFIDQ--GW---------WLGFLISSVATLIGLIALAIGKP 218 (346)
Q Consensus 163 ~~~~~f~~~y~~~niG~~i~~~~~~~i~~~~--g~---------~~~f~i~~~~~~~~~~i~~~~~~ 218 (346)
++...++++...++|..+++.+.+++.+.. +| ...|.+.+++.+++.++++...+
T Consensus 439 -~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 439 -KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp -CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888889999999999999887632 23 22366666666666555544443
Done!