Query 019065
Match_columns 346
No_of_seqs 147 out of 826
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 06:23:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.2E-24 2.7E-29 170.0 9.2 78 254-344 1-79 (79)
2 cd02861 E_set_proteins_like E 99.8 4.3E-19 9.3E-24 138.3 8.9 76 255-343 2-81 (82)
3 KOG1616 Protein involved in Sn 99.6 8.5E-16 1.8E-20 146.6 7.8 83 254-346 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.3 1E-11 2.2E-16 98.2 9.0 77 254-343 5-84 (85)
5 cd02688 E_set E or "early" set 98.9 3.7E-09 8E-14 78.6 8.0 70 255-336 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.6 2E-07 4.3E-12 76.6 7.4 68 255-334 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.5 1.2E-07 2.6E-12 72.8 4.0 58 255-323 11-73 (85)
8 cd02860 Pullulanase_N_term Pul 98.0 2.6E-05 5.6E-10 62.6 7.2 69 255-337 8-88 (100)
9 cd05808 CBM20_alpha_amylase Al 97.9 7.7E-05 1.7E-09 58.8 8.7 63 256-330 2-78 (95)
10 cd02855 Glycogen_branching_enz 97.8 0.00015 3.3E-09 57.4 8.5 78 255-343 21-105 (106)
11 PF00686 CBM_20: Starch bindin 97.6 0.00014 2.9E-09 58.2 6.1 58 255-320 2-68 (96)
12 COG0296 GlgB 1,4-alpha-glucan 97.6 9.3E-05 2E-09 78.4 6.5 67 253-330 34-107 (628)
13 PRK12313 glycogen branching en 97.5 0.00041 8.8E-09 72.5 8.6 67 255-333 38-111 (633)
14 cd05814 CBM20_Prei4 Prei4, N-t 97.4 0.0012 2.6E-08 55.3 9.2 55 256-320 2-66 (120)
15 cd02856 Glycogen_debranching_e 97.4 0.00063 1.4E-08 55.1 7.3 65 256-334 10-91 (103)
16 cd05818 CBM20_water_dikinase P 97.4 0.00095 2E-08 53.7 8.3 67 255-334 2-80 (92)
17 PRK12568 glycogen branching en 97.4 0.00063 1.4E-08 73.3 9.0 69 253-334 136-212 (730)
18 cd05809 CBM20_beta_amylase Bet 97.3 0.0015 3.3E-08 53.0 8.7 72 254-334 2-88 (99)
19 cd05820 CBM20_novamyl Novamyl 97.3 0.002 4.4E-08 52.8 9.4 70 254-335 2-90 (103)
20 PLN02447 1,4-alpha-glucan-bran 97.3 0.0005 1.1E-08 74.3 7.0 63 256-331 115-191 (758)
21 cd02853 MTHase_N_term Maltooli 97.2 0.0018 3.9E-08 50.8 7.7 65 255-335 8-74 (85)
22 PRK14706 glycogen branching en 97.2 0.001 2.3E-08 70.3 8.2 67 255-334 38-112 (639)
23 cd05811 CBM20_glucoamylase Glu 97.1 0.0051 1.1E-07 49.9 9.8 74 254-335 6-93 (106)
24 PRK14705 glycogen branching en 97.1 0.0015 3.3E-08 73.8 9.0 66 253-330 636-709 (1224)
25 cd02852 Isoamylase_N_term Isoa 97.1 0.0015 3.2E-08 54.0 6.8 59 255-324 7-72 (119)
26 PRK05402 glycogen branching en 97.1 0.002 4.3E-08 68.7 8.8 67 255-332 131-204 (726)
27 TIGR02402 trehalose_TreZ malto 97.0 0.0016 3.4E-08 67.4 7.1 62 257-335 1-65 (542)
28 cd05817 CBM20_DSP Dual-specifi 97.0 0.0027 5.9E-08 51.6 7.0 52 257-320 2-62 (100)
29 cd05807 CBM20_CGTase CGTase, C 96.9 0.0067 1.4E-07 49.2 8.9 76 254-335 2-90 (101)
30 cd05813 CBM20_genethonin_1 Gen 96.9 0.0037 8.1E-08 50.0 7.1 53 256-320 2-62 (95)
31 cd05467 CBM20 The family 20 ca 96.9 0.004 8.8E-08 48.8 7.1 52 257-320 2-65 (96)
32 cd05816 CBM20_DPE2_repeat2 Dis 96.8 0.013 2.9E-07 47.4 9.6 66 257-334 2-84 (99)
33 TIGR01515 branching_enzym alph 96.5 0.0086 1.9E-07 62.8 8.1 68 255-334 28-103 (613)
34 cd05810 CBM20_alpha_MTH Glucan 96.5 0.019 4.1E-07 46.9 8.4 67 256-334 2-86 (97)
35 PLN02316 synthase/transferase 96.4 0.044 9.6E-07 61.5 13.5 62 254-322 328-398 (1036)
36 PRK05402 glycogen branching en 96.4 0.0065 1.4E-07 64.9 6.8 62 256-330 29-95 (726)
37 cd05815 CBM20_DPE2_repeat1 Dis 95.6 0.039 8.5E-07 44.6 6.3 55 257-320 2-65 (101)
38 TIGR02104 pulA_typeI pullulana 95.5 0.043 9.4E-07 57.4 7.7 66 256-334 20-95 (605)
39 PLN02316 synthase/transferase 95.0 0.15 3.2E-06 57.5 10.4 98 212-327 119-226 (1036)
40 PRK10439 enterobactin/ferric e 94.4 0.19 4.1E-06 50.6 8.7 82 251-345 35-161 (411)
41 PF03423 CBM_25: Carbohydrate 94.4 0.1 2.2E-06 42.1 5.5 62 256-325 3-75 (87)
42 PF11806 DUF3327: Domain of un 94.0 0.31 6.6E-06 41.8 8.0 79 255-344 2-111 (122)
43 cd05806 CBM20_laforin Laforin 93.6 0.68 1.5E-05 39.6 9.2 55 261-320 11-74 (112)
44 PLN02950 4-alpha-glucanotransf 93.1 0.63 1.4E-05 51.9 10.4 70 254-335 152-237 (909)
45 TIGR02100 glgX_debranch glycog 93.1 0.26 5.7E-06 53.0 7.3 55 256-324 15-75 (688)
46 TIGR02102 pullulan_Gpos pullul 91.3 0.5 1.1E-05 53.7 7.2 66 256-333 328-408 (1111)
47 PLN02950 4-alpha-glucanotransf 90.3 1.6 3.5E-05 48.8 9.8 67 255-330 9-90 (909)
48 TIGR02103 pullul_strch alpha-1 89.1 1.5 3.4E-05 48.9 8.5 68 255-334 135-216 (898)
49 cd02857 CD_pullulan_degrading_ 89.0 2.1 4.6E-05 34.2 7.1 58 255-320 16-79 (116)
50 PRK03705 glycogen debranching 88.9 1 2.2E-05 48.5 6.8 55 256-324 20-78 (658)
51 PLN02960 alpha-amylase 87.7 0.57 1.2E-05 52.3 4.1 59 256-321 129-198 (897)
52 PRK14510 putative bifunctional 82.3 4.6 0.0001 46.5 8.2 56 255-324 23-84 (1221)
53 PLN02877 alpha-amylase/limit d 72.7 10 0.00023 43.0 7.3 65 255-334 222-303 (970)
54 PF02903 Alpha-amylase_N: Alph 70.3 11 0.00023 31.4 5.2 67 256-330 22-100 (120)
55 PF03370 CBM_21: Putative phos 65.5 8.5 0.00018 32.2 3.7 68 256-323 22-99 (113)
56 PLN03244 alpha-amylase; Provis 64.8 5.4 0.00012 44.7 3.0 60 256-321 132-201 (872)
57 KOG3990 Uncharacterized conser 62.6 10 0.00023 37.5 4.2 31 187-217 230-260 (305)
58 KOG0470 1,4-alpha-glucan branc 61.5 9.3 0.0002 42.3 4.0 43 257-310 115-159 (757)
59 COG3794 PetE Plastocyanin [Ene 57.5 31 0.00067 30.5 5.9 53 251-317 58-111 (128)
60 PF15290 Syntaphilin: Golgi-lo 55.8 35 0.00075 34.3 6.5 19 257-275 182-200 (305)
61 PF08317 Spc7: Spc7 kinetochor 53.8 1.1E+02 0.0023 30.1 9.6 54 187-240 207-270 (325)
62 KOG2264 Exostosin EXT1L [Signa 50.3 19 0.00041 39.6 4.0 51 191-241 116-166 (907)
63 PF09726 Macoilin: Transmembra 49.9 48 0.001 36.5 7.0 32 182-213 545-576 (697)
64 KOG1263 Multicopper oxidases [ 49.7 19 0.00041 38.6 3.9 36 299-334 96-135 (563)
65 TIGR03503 conserved hypothetic 45.2 44 0.00096 34.4 5.6 43 268-323 151-195 (374)
66 PF11896 DUF3416: Domain of un 43.2 39 0.00084 31.4 4.5 32 275-319 55-87 (187)
67 PF13473 Cupredoxin_1: Cupredo 43.1 53 0.0011 26.4 4.8 17 300-316 73-90 (104)
68 PF01357 Pollen_allerg_1: Poll 41.9 44 0.00095 26.7 4.0 58 255-327 14-77 (82)
69 PF12777 MT: Microtubule-bindi 40.3 41 0.00088 33.2 4.4 67 196-262 228-297 (344)
70 PF12004 DUF3498: Domain of un 38.7 10 0.00022 40.1 0.0 61 192-252 422-485 (495)
71 KOG0963 Transcription factor/C 38.6 66 0.0014 35.3 5.9 73 189-261 278-363 (629)
72 PF06476 DUF1090: Protein of u 37.9 78 0.0017 27.3 5.2 72 174-245 28-113 (115)
73 TIGR02375 pseudoazurin pseudoa 37.7 1.1E+02 0.0024 26.3 6.1 16 255-270 23-38 (116)
74 PF14347 DUF4399: Domain of un 37.4 54 0.0012 27.0 4.0 34 299-333 49-82 (87)
75 PRK11637 AmiB activator; Provi 36.6 1E+02 0.0022 31.1 6.6 10 229-238 111-120 (428)
76 PRK10785 maltodextrin glucosid 35.5 1.4E+02 0.003 31.9 7.6 61 255-323 21-87 (598)
77 PRK10093 primosomal replicatio 34.4 40 0.00087 31.3 3.1 69 154-228 82-154 (171)
78 TIGR02231 conserved hypothetic 32.9 3.4E+02 0.0074 28.2 9.8 37 190-226 72-108 (525)
79 PRK11637 AmiB activator; Provi 32.7 1.1E+02 0.0024 30.8 6.2 31 189-219 75-105 (428)
80 PF04985 Phage_tube: Phage tai 30.0 2E+02 0.0043 25.3 6.6 63 255-334 78-151 (167)
81 PF07495 Y_Y_Y: Y_Y_Y domain; 28.2 1.1E+02 0.0023 22.2 3.9 23 306-328 33-58 (66)
82 TIGR00998 8a0101 efflux pump m 28.2 2.5E+02 0.0055 26.5 7.4 9 257-265 205-213 (334)
83 PF08308 PEGA: PEGA domain; I 27.8 1.9E+02 0.0042 21.5 5.4 42 257-322 4-45 (71)
84 PF00038 Filament: Intermediat 26.7 2.2E+02 0.0047 27.0 6.7 56 192-247 219-274 (312)
85 PF12325 TMF_TATA_bd: TATA ele 26.1 2.5E+02 0.0054 24.5 6.4 33 185-217 12-44 (120)
86 KOG0045 Cytosolic Ca2+-depende 26.0 62 0.0013 35.2 3.2 27 309-335 114-143 (612)
87 PF11797 DUF3324: Protein of u 25.8 3E+02 0.0066 23.8 6.9 23 308-330 102-127 (140)
88 smart00787 Spc7 Spc7 kinetocho 25.6 1.6E+02 0.0035 29.3 5.8 12 229-240 254-265 (312)
89 TIGR03102 halo_cynanin halocya 25.1 2.1E+02 0.0046 24.6 5.7 17 300-317 83-99 (115)
90 KOG1616 Protein involved in Sn 25.1 27 0.00059 34.2 0.4 66 255-342 223-288 (289)
91 KOG0245 Kinesin-like protein [ 24.8 97 0.0021 36.2 4.5 62 187-248 366-443 (1221)
92 PRK14145 heat shock protein Gr 24.5 2.4E+02 0.0051 26.7 6.4 66 187-252 43-113 (196)
93 PF11629 Mst1_SARAH: C termina 24.4 96 0.0021 23.7 3.1 34 216-249 14-48 (49)
94 TIGR02657 amicyanin amicyanin. 24.3 1.7E+02 0.0037 22.8 4.7 17 300-317 53-69 (83)
95 KOG0272 U4/U6 small nuclear ri 24.1 1.3E+02 0.0029 31.8 5.1 81 196-276 109-197 (459)
96 PF05701 WEMBL: Weak chloropla 23.8 2.8E+02 0.0061 29.2 7.5 42 189-230 379-420 (522)
97 PF04484 DUF566: Family of unk 23.6 1.5E+02 0.0032 29.6 5.1 73 175-250 130-209 (311)
98 cd00503 Frataxin Frataxin is a 23.2 41 0.00089 28.4 1.0 19 311-330 66-84 (105)
99 PF13620 CarboxypepD_reg: Carb 23.2 1.2E+02 0.0027 22.5 3.6 25 298-323 35-59 (82)
100 PF12761 End3: Actin cytoskele 23.1 1.3E+02 0.0029 28.6 4.4 31 184-214 91-121 (195)
101 PRK09039 hypothetical protein; 23.1 2.3E+02 0.005 28.3 6.4 60 188-247 122-184 (343)
102 KOG3564 GTPase-activating prot 23.0 2E+02 0.0043 31.3 6.1 52 186-237 25-79 (604)
103 PF08286 Spc24: Spc24 subunit 22.3 11 0.00023 31.9 -2.6 80 202-286 19-104 (118)
104 COG2433 Uncharacterized conser 22.1 2.4E+02 0.0052 31.3 6.6 61 188-248 435-501 (652)
105 PF04859 DUF641: Plant protein 22.0 2.8E+02 0.006 24.8 6.0 36 187-222 92-127 (131)
106 PF02183 HALZ: Homeobox associ 21.9 3.1E+02 0.0068 20.1 5.3 40 188-227 4-43 (45)
107 PF01491 Frataxin_Cyay: Fratax 21.4 1.4E+02 0.003 25.2 3.9 25 305-330 62-87 (109)
108 KOG0996 Structural maintenance 21.2 2E+02 0.0044 34.1 6.1 68 185-252 443-510 (1293)
109 PRK00446 cyaY frataxin-like pr 21.1 50 0.0011 28.0 1.2 27 300-330 57-83 (105)
110 PF04201 TPD52: Tumour protein 21.1 1.2E+02 0.0025 28.2 3.6 31 180-212 36-66 (162)
111 KOG0250 DNA repair protein RAD 21.0 3.9E+02 0.0083 31.5 8.2 22 111-132 593-616 (1074)
112 PF05546 She9_MDM33: She9 / Md 20.9 2.6E+02 0.0057 26.9 6.0 64 177-240 16-83 (207)
113 TIGR01843 type_I_hlyD type I s 20.7 3.2E+02 0.007 26.4 6.7 16 236-251 254-269 (423)
114 PF04880 NUDE_C: NUDE protein, 20.1 38 0.00082 31.2 0.3 48 172-225 2-52 (166)
115 PRK02710 plastocyanin; Provisi 20.0 2.8E+02 0.0062 23.2 5.5 14 302-316 89-102 (119)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.91 E-value=1.2e-24 Score=170.03 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.7
Q ss_pred ceEEEEEEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCeeecCCCCCee
Q 019065 254 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 333 (346)
Q Consensus 254 L~~VTF~W~g~AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIVDGeW~~DP~nPtV 333 (346)
+++|+|+|+++|++|+|+|+|++|++.+||.+. ..+ |++++.||||.|+|||+|||+|++||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999988899985 234 9999999999999999999999999999999
Q ss_pred cC-CCccceEEE
Q 019065 334 TK-GGICNNILR 344 (346)
Q Consensus 334 tD-~G~vNNVLe 344 (346)
.+ .|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 799999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.79 E-value=4.3e-19 Score=138.27 Aligned_cols=76 Identities=39% Similarity=0.707 Sum_probs=67.8
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCeee-cCCCCCe
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 332 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIVDGeW~-~DP~nPt 332 (346)
.+|+|+|.++ +++|+|+|+|++|+ .++|++. .+|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999998 69999999999998 4788874 569999999999999999999999998 9999997
Q ss_pred ec-C-CCccceEE
Q 019065 333 VT-K-GGICNNIL 343 (346)
Q Consensus 333 Vt-D-~G~vNNVL 343 (346)
.. + .|+.|+||
T Consensus 69 ~~~~~~g~~n~v~ 81 (82)
T cd02861 69 YVDDGFGGKNAVF 81 (82)
T ss_pred eecCCCCccceEc
Confidence 65 4 58899987
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.61 E-value=8.5e-16 Score=146.60 Aligned_cols=83 Identities=39% Similarity=0.567 Sum_probs=75.3
Q ss_pred ceEEEEEEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCeeecCCCCCee
Q 019065 254 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 333 (346)
Q Consensus 254 L~~VTF~W~g~AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIVDGeW~~DP~nPtV 333 (346)
..+|+|+|..+++.|+|.|+|++|...++|.+.. +..|.|++++.|++|.|+|||+|||+|++|++.|++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta 148 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA 148 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence 4799999999999999999999999888888742 234559999999999999999999999999999999
Q ss_pred cC-CCccceEEEeC
Q 019065 334 TK-GGICNNILRVI 346 (346)
Q Consensus 334 tD-~G~vNNVLeVe 346 (346)
++ .|+.||+|.|.
T Consensus 149 ~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 149 EDSLGNLNNILEVQ 162 (289)
T ss_pred ccccCCcccceEec
Confidence 98 79999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.31 E-value=1e-11 Score=98.17 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=65.1
Q ss_pred ceEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeEEEEEEEECCeeecCCCCC
Q 019065 254 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRE 331 (346)
Q Consensus 254 L~~VTF~W~g~-AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL-~LPPGrYEYKFIVDGeW~~DP~nP 331 (346)
...|+|+..+| |++|.|.|+|++|.. .+|+++ +.|.|++++ .|.+|.|.|+|+|||.|+.||.++
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~ 71 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNP 71 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCC
Confidence 35799999997 999999999998864 689875 589999998 488999999999999999999999
Q ss_pred eecC-CCccceEE
Q 019065 332 SVTK-GGICNNIL 343 (346)
Q Consensus 332 tVtD-~G~vNNVL 343 (346)
.... .+..-|++
T Consensus 72 ~~~~~~~~~~~~~ 84 (85)
T cd02858 72 TTKPGRQVDTSGV 84 (85)
T ss_pred ceeecccccceee
Confidence 9874 55554443
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.95 E-value=3.7e-09 Score=78.55 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=60.7
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCC-eEEEEEEEECCeeecCCCCCe
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 332 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPP-GrYEYKFIVDGeW~~DP~nPt 332 (346)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.+ |.|.|+|+|||.|.+++..+.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4789999997 8999999999997667888764 5699999999887 999999999999999998866
Q ss_pred ecCC
Q 019065 333 VTKG 336 (346)
Q Consensus 333 VtD~ 336 (346)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6653
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.57 E-value=2e-07 Score=76.57 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=53.7
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-EEEEEEEE-CC
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 322 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~~-IpL~Kd~s~s~~a~~~skesG~FsttL~L--------PPG-rYEYKFIV-DG 322 (346)
..++|+..+| |++|+|+|+||+|++. .+|.+. ..|.|+++++. +.| .|.|.+.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4689999998 9999999999999864 678874 58999999864 566 67777776 88
Q ss_pred ee--ecCCCCCeec
Q 019065 323 QW--KVDPQRESVT 334 (346)
Q Consensus 323 eW--~~DP~nPtVt 334 (346)
+| +.||-...+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 76 5788766554
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.49 E-value=1.2e-07 Score=72.83 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=46.8
Q ss_pred eEEEEEEecC-CcEEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeEEEEEEEECCe
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQ 323 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNn-W~~~-IpL~Kd~s~s~~a~~~skesG~FsttL~--LPPGrYEYKFIVDGe 323 (346)
..++|+..+| |+.|.|.+.|++ |... ++|.+. ...|.|++++. +++|.+.|+|.|||.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 5899999997 999999999999 8654 788831 36899999998 888988888888765
No 8
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.98 E-value=2.6e-05 Score=62.63 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=54.3
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCe----
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ---- 323 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~-----~~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVDGe---- 323 (346)
..++|+..+| |++|.|.. |++|. ..++|.+. ..|.|++.+. +.+|.+ |+|.|+|.
T Consensus 8 ~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~ 73 (100)
T cd02860 8 EKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGET 73 (100)
T ss_pred CCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEE
Confidence 3588999888 99999988 88886 34677763 6899999986 666764 88888876
Q ss_pred -eecCCCCCeecCCC
Q 019065 324 -WKVDPQRESVTKGG 337 (346)
Q Consensus 324 -W~~DP~nPtVtD~G 337 (346)
...||-...+..+|
T Consensus 74 ~~~~DPyA~~~~~~~ 88 (100)
T cd02860 74 NEVVDPYAKALSANG 88 (100)
T ss_pred EEEcCcccEeEeeCC
Confidence 78999888877544
No 9
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.91 E-value=7.7e-05 Score=58.84 Aligned_cols=63 Identities=27% Similarity=0.556 Sum_probs=47.5
Q ss_pred EEEEEEec---CCcEEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---CC-
Q 019065 256 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG- 322 (346)
Q Consensus 256 ~VTF~W~g---~AksV~VtGS---FNnW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV---DG- 322 (346)
+|+|.... +|+.|+|+|+ +.+|++. ++|... ..+.|++++.||+| .++|||++ +|
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 56676654 4899999995 6899864 567652 56889999999987 79999997 24
Q ss_pred -eeecCCCC
Q 019065 323 -QWKVDPQR 330 (346)
Q Consensus 323 -eW~~DP~n 330 (346)
.|...++.
T Consensus 70 ~~WE~~~nr 78 (95)
T cd05808 70 VTWESGPNR 78 (95)
T ss_pred EEEecCCCE
Confidence 47666643
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.79 E-value=0.00015 Score=57.38 Aligned_cols=78 Identities=26% Similarity=0.348 Sum_probs=52.2
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-EEEEEEEEC-Ce--eecC
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQ--WKVD 327 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~-~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPG-rYEYKFIVD-Ge--W~~D 327 (346)
..++|+...| |+.|.|.|+|++|.. ..+|.+. ...|.|.+.+. +++| .|.|++..+ |. .+.|
T Consensus 21 ~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~D 89 (106)
T cd02855 21 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKAD 89 (106)
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeC
Confidence 3578998887 999999999999964 3578764 24899999886 6666 455554444 33 3556
Q ss_pred CCCCeecCCCccceEE
Q 019065 328 PQRESVTKGGICNNIL 343 (346)
Q Consensus 328 P~nPtVtD~G~vNNVL 343 (346)
|-...+......++|+
T Consensus 90 PYa~~~~~~~~~~~~~ 105 (106)
T cd02855 90 PYAFYSELRPGTASIV 105 (106)
T ss_pred CCceeeEeCCCCeEEe
Confidence 7665555433355443
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.63 E-value=0.00014 Score=58.20 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=45.8
Q ss_pred eEEEEEEec---CCcEEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE
Q 019065 255 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 320 (346)
Q Consensus 255 ~~VTF~W~g---~AksV~VtGSFN---nW~~--~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV 320 (346)
+.|+|+... +++.|+|+|+.. +|++ .++|.... +......|++++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 578888855 489999999996 8997 46776531 01246899999999998 79999999
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.62 E-value=9.3e-05 Score=78.36 Aligned_cols=67 Identities=25% Similarity=0.448 Sum_probs=53.5
Q ss_pred CceEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCe-----ee
Q 019065 253 GLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----WK 325 (346)
Q Consensus 253 gL~~VTF~W~g~-AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVDGe-----W~ 325 (346)
|-..|+|+..+| ++.|.|.|+||+|... +|... ..++.|.|.++++ ++|| +.|||.+++. ++
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~-~~~~~---------~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~ 102 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGR-RMPMR---------DRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLK 102 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccce-ecccc---------cCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeec
Confidence 566899999998 9999999999999873 44432 1136799999999 9999 9999999754 37
Q ss_pred cCCCC
Q 019065 326 VDPQR 330 (346)
Q Consensus 326 ~DP~n 330 (346)
.||-.
T Consensus 103 ~DP~a 107 (628)
T COG0296 103 ADPYA 107 (628)
T ss_pred cCchh
Confidence 77654
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.46 E-value=0.00041 Score=72.49 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=50.5
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-EEEEEEEE-CCee--ecC
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 327 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~~-IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPG-rYEYKFIV-DGeW--~~D 327 (346)
..|+|+..+| |++|.|.|+|++|.+. .+|.+. ..|.|.+++. +++| .|.|++.+ ||.| +.|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 4799999998 9999999999999864 578763 5799999997 5555 67777654 5765 456
Q ss_pred CCCCee
Q 019065 328 PQRESV 333 (346)
Q Consensus 328 P~nPtV 333 (346)
|-...+
T Consensus 106 Pya~~~ 111 (633)
T PRK12313 106 PFAFYF 111 (633)
T ss_pred CceEEE
Confidence 654433
No 14
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.41 E-value=0.0012 Score=55.32 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=43.7
Q ss_pred EEEEEEec----CCcEEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE
Q 019065 256 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 320 (346)
Q Consensus 256 ~VTF~W~g----~AksV~VtGS---FNnW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV 320 (346)
.|+|+... +++.|+|+|+ +.+|++. ++|.+.. .....|++.+.||++ .++|||++
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 46777765 3899999999 8899854 5776530 145789999999998 89999999
No 15
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.41 E-value=0.00063 Score=55.14 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=49.1
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECC---------
Q 019065 256 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG--------- 322 (346)
Q Consensus 256 ~VTF~W~g~-AksV~VtGSFNnW~--~~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVDG--------- 322 (346)
.++|+..+| |+.|.|.. |++|. ..++|.+. ..|.|.+.+. +.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g~~~p~~~~~ 75 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHGPYDPERGLR 75 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECCccCcccCcc
Confidence 478998888 99999998 66664 34678763 5799999984 67775 69999999
Q ss_pred ----eeecCCCCCeec
Q 019065 323 ----QWKVDPQRESVT 334 (346)
Q Consensus 323 ----eW~~DP~nPtVt 334 (346)
....||-...+.
T Consensus 76 ~~~~~~~~DPYA~~~~ 91 (103)
T cd02856 76 FNPAKLLLDPYARALD 91 (103)
T ss_pred cCCCeEEecCCcceEc
Confidence 556666655544
No 16
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.41 E-value=0.00095 Score=53.73 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=50.3
Q ss_pred eEEEEEEec---CCcEEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---CC--
Q 019065 255 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 322 (346)
Q Consensus 255 ~~VTF~W~g---~AksV~VtGSF---NnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV---DG-- 322 (346)
..|+|+... .|+.++|+|+- .+|++..+|.. ..+.|++.+.+|+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 356777765 49999999988 59997666764 24679999999988 79999999 44
Q ss_pred eeecCCCCCeec
Q 019065 323 QWKVDPQRESVT 334 (346)
Q Consensus 323 eW~~DP~nPtVt 334 (346)
.|...++.-...
T Consensus 69 ~WE~g~Nr~~~~ 80 (92)
T cd05818 69 IWEGGNNRVLEL 80 (92)
T ss_pred EEEeCCCEEEEc
Confidence 487766654433
No 17
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.38 E-value=0.00063 Score=73.29 Aligned_cols=69 Identities=28% Similarity=0.457 Sum_probs=53.0
Q ss_pred CceEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEE---CCee--
Q 019065 253 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW-- 324 (346)
Q Consensus 253 gL~~VTF~W~g~-AksV~VtGSFNnW~~~-IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIV---DGeW-- 324 (346)
|-.-|+|+..+| |++|.|+|+||+|... .+|.+. ..|+|++.++ +.+| ..|||.| ||.+
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence 445789999998 9999999999999864 578653 6899999985 7777 3567777 7876
Q ss_pred ecCCCCCeec
Q 019065 325 KVDPQRESVT 334 (346)
Q Consensus 325 ~~DP~nPtVt 334 (346)
+.||-...+.
T Consensus 203 k~DPYA~~~e 212 (730)
T PRK12568 203 KADPVARQTE 212 (730)
T ss_pred cCCCcceEee
Confidence 4687655443
No 18
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.33 E-value=0.0015 Score=52.96 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=50.1
Q ss_pred ceEEEEEEec----CCcEEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---C
Q 019065 254 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 321 (346)
Q Consensus 254 L~~VTF~W~g----~AksV~VtG---SFNnW~~~I-pL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV---D 321 (346)
.++|+|.... .++.|+|+| ++.+|++.. +|.... ....+.|++.+.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 4689999853 389999999 567998641 233210 0135789999999999 79999999 4
Q ss_pred C---eeecCCCCCeec
Q 019065 322 G---QWKVDPQRESVT 334 (346)
Q Consensus 322 G---eW~~DP~nPtVt 334 (346)
| .|...++.-...
T Consensus 73 ~~~~~WE~g~nr~~~~ 88 (99)
T cd05809 73 GTNKSWQGGQQSWYPV 88 (99)
T ss_pred CCeeEEecCCCeeEEC
Confidence 4 276666544333
No 19
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.32 E-value=0.002 Score=52.82 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=52.0
Q ss_pred ceEEEEEEec-----CCcEEEEEeeeC---CCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEE
Q 019065 254 LEVVEIQYSG-----DGEIVEVAGSFN---GWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFI 319 (346)
Q Consensus 254 L~~VTF~W~g-----~AksV~VtGSFN---nW~~~I-----pL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFI 319 (346)
.++|+|+... .++.|+|+|+-. +|++.. +|.. .....|.+.+.||.| ..+|||+
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v 69 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFL 69 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEE
Confidence 3689999863 389999999874 998632 4432 245789999999999 7999999
Q ss_pred E---CC--eeecCCCCCeecC
Q 019065 320 V---DG--QWKVDPQRESVTK 335 (346)
Q Consensus 320 V---DG--eW~~DP~nPtVtD 335 (346)
+ || .|...++.-....
T Consensus 70 ~~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 70 KAPADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred EECCCCCEEEEeCCCEeEECC
Confidence 9 55 3877766555444
No 20
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.29 E-value=0.0005 Score=74.33 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=47.5
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------eCCeEEEEEEEEC---Ce
Q 019065 256 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ 323 (346)
Q Consensus 256 ~VTF~W~g~-AksV~VtGSFNnW~~~-IpL~Kd~s~s~~a~~~skesG~FsttL~-------LPPGrYEYKFIVD---Ge 323 (346)
.++|+..+| |++|.|+|+||+|... .+|++. +.|+|++.++ +++|. .|||.|. |.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~ 181 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGR 181 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCc
Confidence 689999998 9999999999999864 578764 6899999986 44553 5677773 54
Q ss_pred --eecCCCCC
Q 019065 324 --WKVDPQRE 331 (346)
Q Consensus 324 --W~~DP~nP 331 (346)
++.||-..
T Consensus 182 ~~~r~dpya~ 191 (758)
T PLN02447 182 WVDRIPAWIK 191 (758)
T ss_pred EEeecCchHh
Confidence 45666443
No 21
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.22 E-value=0.0018 Score=50.80 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=48.4
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEEC-CeeecCCCCCe
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES 332 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIVD-GeW~~DP~nPt 332 (346)
..++|+..+| |++|.|.... |. .++|.+. ..|.|++++..-+|. .|+|.|+ |..+.||....
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 4589999988 9999999643 53 4788764 689999998533775 3666666 56889998887
Q ss_pred ecC
Q 019065 333 VTK 335 (346)
Q Consensus 333 VtD 335 (346)
...
T Consensus 72 ~~~ 74 (85)
T cd02853 72 QPE 74 (85)
T ss_pred CCC
Confidence 543
No 22
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.20 E-value=0.001 Score=70.33 Aligned_cols=67 Identities=31% Similarity=0.451 Sum_probs=50.9
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECC---ee--ec
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV 326 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~~-IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVDG---eW--~~ 326 (346)
..|+|+..+| |++|.|.|+||+|... .+|.+. ..|.|.+.++ +.+| ..|||.|+| .+ +.
T Consensus 38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~ 104 (639)
T PRK14706 38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM 104 (639)
T ss_pred ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence 4689999998 9999999999999864 578764 4699999986 4566 468888865 43 67
Q ss_pred CCCCCeec
Q 019065 327 DPQRESVT 334 (346)
Q Consensus 327 DP~nPtVt 334 (346)
||-...+.
T Consensus 105 DPYa~~~~ 112 (639)
T PRK14706 105 DPYGSFFE 112 (639)
T ss_pred CcceEEEe
Confidence 77655443
No 23
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.13 E-value=0.0051 Score=49.87 Aligned_cols=74 Identities=28% Similarity=0.557 Sum_probs=50.9
Q ss_pred ceEEEEEEec---CCcEEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---C
Q 019065 254 LEVVEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 321 (346)
Q Consensus 254 L~~VTF~W~g---~AksV~VtGSFN---nW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV---D 321 (346)
.+.|+|.... .|+.|+|+|+.. +|++. ++|.... .....+.|.+.+.||+| .++|||++ |
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 3678887765 489999999874 89863 5665420 01235789999999988 59999996 2
Q ss_pred C--eeecCCCCCeecC
Q 019065 322 G--QWKVDPQRESVTK 335 (346)
Q Consensus 322 G--eW~~DP~nPtVtD 335 (346)
| .|...++.-....
T Consensus 78 ~~~~WE~~~nr~~~~~ 93 (106)
T cd05811 78 GSVTWESDPNRSYTVP 93 (106)
T ss_pred CcEEEecCCCeEEECC
Confidence 3 3876664443333
No 24
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.13 E-value=0.0015 Score=73.80 Aligned_cols=66 Identities=33% Similarity=0.602 Sum_probs=50.5
Q ss_pred CceEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEEC---Cee--
Q 019065 253 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 324 (346)
Q Consensus 253 gL~~VTF~W~g~-AksV~VtGSFNnW~~~-IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVD---GeW-- 324 (346)
|-..|.|+..+| |+.|.|+|+||+|... .+|.+. ...|+|.+.++ +.+|. .|||.|+ |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 445789999998 9999999999999864 467653 25799999985 88885 5788884 555
Q ss_pred ecCCCC
Q 019065 325 KVDPQR 330 (346)
Q Consensus 325 ~~DP~n 330 (346)
+.||-.
T Consensus 704 k~DPyA 709 (1224)
T PRK14705 704 KADPLA 709 (1224)
T ss_pred cCCccc
Confidence 556644
No 25
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.13 E-value=0.0015 Score=54.02 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=44.0
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCee
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 324 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~---~--~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVDGeW 324 (346)
..++|+..+| |+.|.|.. |++|. + .++|.+.. .+..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~ 72 (119)
T cd02852 7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPF 72 (119)
T ss_pred CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence 3588998887 99999998 88886 2 35665531 123699999985 77886 6999999854
No 26
>PRK05402 glycogen branching enzyme; Provisional
Probab=97.07 E-value=0.002 Score=68.74 Aligned_cols=67 Identities=28% Similarity=0.466 Sum_probs=50.0
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-EEEEEEEEC-Cee--ecC
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 327 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~~-IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPG-rYEYKFIVD-GeW--~~D 327 (346)
..|+|+..+| |++|.|.|+|++|... .+|.+. ...|.|.++++ +++| .|.|++..+ |.| ..|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 4689999998 9999999999999764 578763 25799999885 6777 677777665 454 455
Q ss_pred CCCCe
Q 019065 328 PQRES 332 (346)
Q Consensus 328 P~nPt 332 (346)
|-.-.
T Consensus 200 PYa~~ 204 (726)
T PRK05402 200 PYAFA 204 (726)
T ss_pred CceEE
Confidence 54433
No 27
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=97.01 E-value=0.0016 Score=67.39 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=50.5
Q ss_pred EEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECC-eeecCCCCCee
Q 019065 257 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 333 (346)
Q Consensus 257 VTF~W~g~-AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVDG-eW~~DP~nPtV 333 (346)
|+|+..+| |++|.|.+. + ..++|.+. ..|.|++++. +.+| |.|+|.||| ..+.||.....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 57988887 999999972 3 35788874 5799999996 7788 789999999 68999988876
Q ss_pred cC
Q 019065 334 TK 335 (346)
Q Consensus 334 tD 335 (346)
..
T Consensus 64 ~~ 65 (542)
T TIGR02402 64 PD 65 (542)
T ss_pred cc
Confidence 54
No 28
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.99 E-value=0.0027 Score=51.62 Aligned_cols=52 Identities=23% Similarity=0.377 Sum_probs=39.7
Q ss_pred EEEEEec---CCcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE
Q 019065 257 VEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 320 (346)
Q Consensus 257 VTF~W~g---~AksV~VtGSF---NnW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV 320 (346)
|+|+... .|+.|+|+|+- .+|++. ++|... ....|++++.+|+| .++|||+|
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence 3444443 48999999995 689854 566542 45789999999988 69999999
No 29
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.95 E-value=0.0067 Score=49.23 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=50.5
Q ss_pred ceEEEEEEec----CCcEEEEEeeeC---CCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---CC
Q 019065 254 LEVVEIQYSG----DGEIVEVAGSFN---GWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 322 (346)
Q Consensus 254 L~~VTF~W~g----~AksV~VtGSFN---nW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV---DG 322 (346)
.++|+|.... .++.|+|+|+-. +|++...+..... ........|.+.+.||.| .++|||++ ||
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~~~ 75 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNGDN 75 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc------cCCCcCCcEEEEEEcCCCCcEEEEEEEECCCC
Confidence 4688898753 389999999874 9986422111000 001245789999999999 79999999 45
Q ss_pred e--eecCCCCCeecC
Q 019065 323 Q--WKVDPQRESVTK 335 (346)
Q Consensus 323 e--W~~DP~nPtVtD 335 (346)
. |...++.-....
T Consensus 76 ~~~WE~g~nr~~~~p 90 (101)
T cd05807 76 TVTWESGSNHTYTAP 90 (101)
T ss_pred CEEEEeCCCEEEeCC
Confidence 3 766655444433
No 30
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.92 E-value=0.0037 Score=49.96 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=41.8
Q ss_pred EEEEEEecC----CcEEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE
Q 019065 256 VVEIQYSGD----GEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 320 (346)
Q Consensus 256 ~VTF~W~g~----AksV~VtGSF---NnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV 320 (346)
+|+|+...+ ++.|+|+|+- -+|+...+|... ..+.|.+.+.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence 577777553 5778899987 489877778642 46789999999998 59999998
No 31
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.90 E-value=0.004 Score=48.78 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=40.3
Q ss_pred EEEEEec---CCcEEEEEeeeC---CCccc--cccCCCCCCCccccccccC-CCcEEEEEEeCC--e-EEEEEEEE
Q 019065 257 VEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRK-SRLWSTVLWLYP--G-TYEIKFIV 320 (346)
Q Consensus 257 VTF~W~g---~AksV~VtGSFN---nW~~~--IpL~Kd~s~s~~a~~~ske-sG~FsttL~LPP--G-rYEYKFIV 320 (346)
|+|+... +|+.|+|+|+.. +|++. ++|... . .+.|.+.+.+|+ | .++|||++
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~------------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTS------------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCC------------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4455543 499999999985 89853 567642 3 688999999999 7 79999999
No 32
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.82 E-value=0.013 Score=47.42 Aligned_cols=66 Identities=26% Similarity=0.571 Sum_probs=47.7
Q ss_pred EEEEEec----CCcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--EEEEEEEE--C--
Q 019065 257 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 321 (346)
Q Consensus 257 VTF~W~g----~AksV~VtGSF---NnW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG--rYEYKFIV--D-- 321 (346)
|+|+... +++.|+|+|+. .+|++. ++|... ....|.+.+.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5666654 38999999996 589853 567642 46789999999986 59999999 2
Q ss_pred C--eeecCCCCCeec
Q 019065 322 G--QWKVDPQRESVT 334 (346)
Q Consensus 322 G--eW~~DP~nPtVt 334 (346)
| .|..-++.-...
T Consensus 70 ~~~~WE~g~nr~~~~ 84 (99)
T cd05816 70 GVVSWENGPNRELSA 84 (99)
T ss_pred CcEEEEcCCCeEEEC
Confidence 3 276665544433
No 33
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.50 E-value=0.0086 Score=62.80 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=50.8
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEEC---Ce--eec
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 326 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~~-IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVD---Ge--W~~ 326 (346)
..++|+..+| |++|.|.|+|++|... .+|.+. ...|.|++.++ ..+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 4689999998 9999999999999754 467653 24799999886 46665 5788884 54 478
Q ss_pred CCCCCeec
Q 019065 327 DPQRESVT 334 (346)
Q Consensus 327 DP~nPtVt 334 (346)
||-...+.
T Consensus 96 DPYA~~~~ 103 (613)
T TIGR01515 96 DPYAFYAE 103 (613)
T ss_pred CCCEeeec
Confidence 88665443
No 34
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.48 E-value=0.019 Score=46.86 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=47.6
Q ss_pred EEEEEEe-c---CCcEEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---CC
Q 019065 256 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 322 (346)
Q Consensus 256 ~VTF~W~-g---~AksV~VtGSFN---nW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV---DG 322 (346)
+|+|... + .++.|+|+|+.. +|++. ++|... ....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 5666633 2 489999999885 99854 455432 45789999999999 79999998 22
Q ss_pred -----eeecCCCCCeec
Q 019065 323 -----QWKVDPQRESVT 334 (346)
Q Consensus 323 -----eW~~DP~nPtVt 334 (346)
.|...++.-...
T Consensus 70 ~~~~v~WE~g~Nr~~~~ 86 (97)
T cd05810 70 PTAGVQWQGGGNNQLTT 86 (97)
T ss_pred CcceEEEeeCCCEEEeC
Confidence 476666654433
No 35
>PLN02316 synthase/transferase
Probab=96.44 E-value=0.044 Score=61.50 Aligned_cols=62 Identities=13% Similarity=0.346 Sum_probs=45.9
Q ss_pred ceEEEEEEec------CCcEEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE-CC
Q 019065 254 LEVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 322 (346)
Q Consensus 254 L~~VTF~W~g------~AksV~VtGSFNnW~~~Ip--L~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIV-DG 322 (346)
-.+|++.|+. ...+|.|.|.||+|..... +.. ++...+.++.|.+++.+|+.-|-.-|+. ||
T Consensus 328 G~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~-------~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 328 GDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKL-------VKSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCccccee-------ecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 3688899973 2689999999999987532 211 1122234668999999999999999998 66
No 36
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.42 E-value=0.0065 Score=64.85 Aligned_cols=62 Identities=21% Similarity=0.095 Sum_probs=46.7
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE--CCe--eecCCCC
Q 019065 256 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR 330 (346)
Q Consensus 256 ~VTF~W~g~-AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIV--DGe--W~~DP~n 330 (346)
-++|+..+| |++|.|+|+||+ ....+|.+. ...|.|.+.+++..|.. |||.| ||. .+.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 578998887 999999999996 334578763 35799999999888832 45545 885 5667754
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.61 E-value=0.039 Score=44.56 Aligned_cols=55 Identities=20% Similarity=0.439 Sum_probs=39.5
Q ss_pred EEEEEec---CCcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE
Q 019065 257 VEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 320 (346)
Q Consensus 257 VTF~W~g---~AksV~VtGSF---NnW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV 320 (346)
|+|.... .|+.|+|+|+- .+|++. ++|... .......|.+.+.+|++ .++|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 4555554 39999999987 489754 556431 01134589999999988 69999999
No 38
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.47 E-value=0.043 Score=57.41 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=48.2
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-EEEEEEEECCe--ee
Q 019065 256 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK 325 (346)
Q Consensus 256 ~VTF~W~g~-AksV~VtGSFNnW~~-----~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPG-rYEYKFIVDGe--W~ 325 (346)
.++|+..+| |++|.|.+ |++|.. .++|.+. ..|+|++.++ ..+| .|.|++..+|. ++
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 489999998 99999997 888853 3577763 5799999986 5666 45555544665 58
Q ss_pred cCCCCCeec
Q 019065 326 VDPQRESVT 334 (346)
Q Consensus 326 ~DP~nPtVt 334 (346)
.||-...+.
T Consensus 87 ~DPya~~~~ 95 (605)
T TIGR02104 87 VDPYAKAVT 95 (605)
T ss_pred cCCCcceec
Confidence 898765544
No 39
>PLN02316 synthase/transferase
Probab=95.00 E-value=0.15 Score=57.49 Aligned_cols=98 Identities=21% Similarity=0.399 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHhhCCCceEEEEEEec------CCcEEEEEeeeCCCccc---cc
Q 019065 212 IEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSG------DGEIVEVAGSFNGWHHR---IK 282 (346)
Q Consensus 212 l~~~k~~Ls~Lq~kae~~i~ea~~li~eK~~~L~aAe~aLsgL~~VTF~W~g------~AksV~VtGSFNnW~~~---Ip 282 (346)
|+.+++-.+.+|..|+...+..+++.-.=. .+..-.+|.+.|.. +..+|.|.|.||+|.-. .+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~P~--------~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~ 190 (1036)
T PLN02316 119 LERENLRKREIEELAEENFSRGNKLFVYPQ--------VVKPDSDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTER 190 (1036)
T ss_pred hhHHHHHHHHHHHHHhhccCCCCeEEeccc--------cccCCCeeEEEEcCCCCccCCCCceEEEecccccccccccee
Confidence 333344455677777777777666664331 12233467777764 25899999999999753 23
Q ss_pred cCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE-CCeeecC
Q 019065 283 MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DGQWKVD 327 (346)
Q Consensus 283 L~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIV-DGeW~~D 327 (346)
|.|.. ..++.|.+.+.+|++-|..-|+. ||.-.+|
T Consensus 191 ~~k~~----------~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yD 226 (1036)
T PLN02316 191 LEKTE----------LGGDWWSCKLHIPKEAYKMDFVFFNGQNVYD 226 (1036)
T ss_pred ccccc----------cCCCeEEEEEecCccceEEEEEEeCCccccc
Confidence 44421 14678999999999999999999 7753333
No 40
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=94.42 E-value=0.19 Score=50.60 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=57.1
Q ss_pred CCCceEEEEEEecC-C-------cEEEEEeeeCCCc------cccccCCCCCCCccccccccCCCcEEEEEEeCCe-EEE
Q 019065 251 LSGLEVVEIQYSGD-G-------EIVEVAGSFNGWH------HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYE 315 (346)
Q Consensus 251 LsgL~~VTF~W~g~-A-------ksV~VtGSFNnW~------~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYE 315 (346)
-.+.+.|||-|.++ + +.|+|. .|+.. .+..|.+. ....+|..++.||.. +-.
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~--~n~~tdh~~~~~~~~l~rl-----------~~tDvW~~~~~~p~~~r~s 101 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIY--INGVTDHHQNSQPQSLQRI-----------AGTDVWQWSTELSANWRGS 101 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEe--CCCCCCcCccCCcchhhcc-----------CCCceEEEEEEECcccEEE
Confidence 34668999999985 3 258874 33333 22357775 368899999999999 899
Q ss_pred EEEEEC----------------------------CeeecCCCCCeecC--CCccceEEEe
Q 019065 316 IKFIVD----------------------------GQWKVDPQRESVTK--GGICNNILRV 345 (346)
Q Consensus 316 YKFIVD----------------------------GeW~~DP~nPtVtD--~G~vNNVLeV 345 (346)
|+|+++ +.-+.||.||.... .|...|+|++
T Consensus 102 Y~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 102 YCFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EEEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 999993 11248999998754 2444577654
No 41
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.36 E-value=0.1 Score=42.06 Aligned_cols=62 Identities=24% Similarity=0.571 Sum_probs=37.9
Q ss_pred EEEEEEec------CCcEEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE-CC--ee
Q 019065 256 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW 324 (346)
Q Consensus 256 ~VTF~W~g------~AksV~VtGSFNnW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIV-DG--eW 324 (346)
+|++.|.. ++..|.+.+.|++|+.. +.|.+.. .....+.|++++.+|..-|+..|+. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~--------~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC--------VPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES--------S---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee--------eeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 67777743 37899999999999865 4465431 0112799999999999988999988 65 46
Q ss_pred e
Q 019065 325 K 325 (346)
Q Consensus 325 ~ 325 (346)
-
T Consensus 75 D 75 (87)
T PF03423_consen 75 D 75 (87)
T ss_dssp E
T ss_pred e
Confidence 3
No 42
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=94.03 E-value=0.31 Score=41.76 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=53.5
Q ss_pred eEEEEEEe----cCCcEEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEECCe-
Q 019065 255 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 323 (346)
Q Consensus 255 ~~VTF~W~----g~AksV~VtGSFNnW~~~-----IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIVDGe- 323 (346)
+.|||-|. +....|.|-|..|++..+ -.|.+. .+.++|..++.||.+ +-.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 346789999999999654 245554 367899999999999 89999997533
Q ss_pred ---------------eecCCCCCeec-C----CCccceEEE
Q 019065 324 ---------------WKVDPQRESVT-K----GGICNNILR 344 (346)
Q Consensus 324 ---------------W~~DP~nPtVt-D----~G~vNNVLe 344 (346)
-+.||.||... . .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 46799999864 2 367777765
No 43
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.56 E-value=0.68 Score=39.60 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=37.2
Q ss_pred EecCCcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----EEEEEEEE
Q 019065 261 YSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 320 (346)
Q Consensus 261 W~g~AksV~VtGSF---NnW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG----rYEYKFIV 320 (346)
+-.++++|+|+|+- -+|++. ++|.... + .........|.+.+.||+| .++|||+.
T Consensus 11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~--y---t~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 11 FADRDTELLVLGSRPELGSWDPQRAVPMRPAR--K---ALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred ecCCCCEEEEEECchhcCCCCccccccccccc--c---cccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 33468999999986 589854 4555320 0 0000134579999999996 79999998
No 44
>PLN02950 4-alpha-glucanotransferase
Probab=93.06 E-value=0.63 Score=51.86 Aligned_cols=70 Identities=20% Similarity=0.383 Sum_probs=52.1
Q ss_pred ceEEEEEEec----CCcEEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--EEEEEEEE--
Q 019065 254 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV-- 320 (346)
Q Consensus 254 L~~VTF~W~g----~AksV~VtGSFN---nW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG--rYEYKFIV-- 320 (346)
.++|+|+... .|+.|+|+|+-. +|++. ++|.. .....|++.+.+|++ ..+|||++
T Consensus 152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~~ 219 (909)
T PLN02950 152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQT 219 (909)
T ss_pred ceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEEc
Confidence 3788888765 389999999874 99864 34543 246889999999988 59999999
Q ss_pred -CC--eeecCCCCCeecC
Q 019065 321 -DG--QWKVDPQRESVTK 335 (346)
Q Consensus 321 -DG--eW~~DP~nPtVtD 335 (346)
+| .|-..++.-...+
T Consensus 220 ~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 220 AEGLVSLELGVNRELSLD 237 (909)
T ss_pred CCCceEEeeCCCceeecC
Confidence 45 3877766655444
No 45
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=93.06 E-value=0.26 Score=52.99 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=42.2
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCee
Q 019065 256 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 324 (346)
Q Consensus 256 ~VTF~W~g~-AksV~VtGSFNnW~~----~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVDGeW 324 (346)
.|+|+..+| |+.|.|. -|++|.. .++|.+. ..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER------------TDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC------------CCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 589999988 9999986 6766542 3567653 5799999996 778875 999999853
No 46
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=91.31 E-value=0.5 Score=53.73 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=48.6
Q ss_pred EEEEEEecC-CcEEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----EEEEEEEECC--
Q 019065 256 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG-- 322 (346)
Q Consensus 256 ~VTF~W~g~-AksV~VtGS-FNnW~~---~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPG-----rYEYKFIVDG-- 322 (346)
.++|+..+| |++|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~ 395 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG 395 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence 378999998 999999984 455653 4678763 6899999986 4443 3688888876
Q ss_pred --eeecCCCCCee
Q 019065 323 --QWKVDPQRESV 333 (346)
Q Consensus 323 --eW~~DP~nPtV 333 (346)
..+.||-...+
T Consensus 396 ~~~~~~DPYA~al 408 (1111)
T TIGR02102 396 DKVLALDPYAKSL 408 (1111)
T ss_pred ceEEEeChhheEE
Confidence 46788866543
No 47
>PLN02950 4-alpha-glucanotransferase
Probab=90.30 E-value=1.6 Score=48.77 Aligned_cols=67 Identities=18% Similarity=0.433 Sum_probs=47.0
Q ss_pred eEEEEEEec---CCcEEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---CC
Q 019065 255 EVVEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 322 (346)
Q Consensus 255 ~~VTF~W~g---~AksV~VtGSFN---nW~~~--IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG-rYEYKFIV---DG 322 (346)
..|+|..+. .|++|+|+|+-. +|+.. ++|... +......|++++.||+| ..+|||++ ||
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 567777664 389999999884 78754 566432 01134589999999998 69999995 44
Q ss_pred e---eecCCCC
Q 019065 323 Q---WKVDPQR 330 (346)
Q Consensus 323 e---W~~DP~n 330 (346)
. |-..++.
T Consensus 80 ~vi~WE~g~NR 90 (909)
T PLN02950 80 NVLRWEAGKKR 90 (909)
T ss_pred ceeeeecCCCe
Confidence 3 7666643
No 48
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=89.08 E-value=1.5 Score=48.93 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=48.6
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEEC------Ce-
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 323 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~--~~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVD------Ge- 323 (346)
..++|+..+| |+.|.|.+.+++|. ..++|.+. ...|+|++.+. ..+|.| |+|.|+ |+
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence 4789999998 89999997776664 23678763 24799999986 556643 677775 54
Q ss_pred ---eecCCCCCeec
Q 019065 324 ---WKVDPQRESVT 334 (346)
Q Consensus 324 ---W~~DP~nPtVt 334 (346)
++.||-...+.
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 37888766554
No 49
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=88.96 E-value=2.1 Score=34.19 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=38.2
Q ss_pred eEEEEEEec---CCcEEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE
Q 019065 255 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 320 (346)
Q Consensus 255 ~~VTF~W~g---~AksV~VtGSFNn--W~-~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIV 320 (346)
.+|+|+... +...|.|.-.-+. |. ..++|.+... +.....|.+++.++.|++.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 456666654 3678888755443 22 2467876421 112346999999888999999999
No 50
>PRK03705 glycogen debranching enzyme; Provisional
Probab=88.87 E-value=1 Score=48.47 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=41.9
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCee
Q 019065 256 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 324 (346)
Q Consensus 256 ~VTF~W~g~-AksV~VtGSFNnW~--~~IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVDGeW 324 (346)
.|+|+..+| |++|.|.. |++|. ..++|.+ +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 589999988 99999997 77653 2456765 25799999985 66775 4999999853
No 51
>PLN02960 alpha-amylase
Probab=87.70 E-value=0.57 Score=52.27 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=42.2
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCccccc-cCCCCCCCccccccccCCCcEEEEEE--eCCeE-------EEEEEEEC
Q 019065 256 VVEIQYSGD-GEIVEVAGSFNGWHHRIK-MDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGT-------YEIKFIVD 321 (346)
Q Consensus 256 ~VTF~W~g~-AksV~VtGSFNnW~~~Ip-L~Kd~s~s~~a~~~skesG~FsttL~--LPPGr-------YEYKFIVD 321 (346)
-|.|.-.+| |..+.|+|+||||.+.-. |.+ +-.+..+-|.|.++++ |.+|. -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 567766665 899999999999998643 332 1123347899999984 88872 36788776
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=82.33 E-value=4.6 Score=46.50 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=43.5
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCee
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 324 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~~----IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVDGeW 324 (346)
..|+|+..++ |+.|.|. .|+.|... ++|.. +..++|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 4689998887 9999997 89988642 45533 35799999875 88887 6999999854
No 53
>PLN02877 alpha-amylase/limit dextrinase
Probab=72.75 E-value=10 Score=43.03 Aligned_cols=65 Identities=14% Similarity=0.304 Sum_probs=43.6
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEEC------
Q 019065 255 EVVEIQYSGD-GEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------ 321 (346)
Q Consensus 255 ~~VTF~W~g~-AksV~VtGSFNnW~~~-----IpL~Kd~s~s~~a~~~skesG~FsttL~-LPPGrYEYKFIVD------ 321 (346)
..++|+..+| |+.|.|.- |++|... ++|. ...|+|++.+. ...| +.|+|.|+
T Consensus 222 ~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~ 286 (970)
T PLN02877 222 DAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEG-CYYVYEVSVYHPST 286 (970)
T ss_pred CCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCC-CeeEEEEeecccCC
Confidence 3789999998 99999984 6665321 3454 25899999986 4455 44777776
Q ss_pred Ce----eecCCCCCeec
Q 019065 322 GQ----WKVDPQRESVT 334 (346)
Q Consensus 322 Ge----W~~DP~nPtVt 334 (346)
|. ...||-...+.
T Consensus 287 g~~~~~~v~DPYA~als 303 (970)
T PLN02877 287 GKVETCYANDPYARGLS 303 (970)
T ss_pred CcccccccCCccceEEe
Confidence 33 25677665544
No 54
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=70.33 E-value=11 Score=31.36 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=41.7
Q ss_pred EEEEEEec---CCcEEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE--CCe-
Q 019065 256 VVEIQYSG---DGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ- 323 (346)
Q Consensus 256 ~VTF~W~g---~AksV~Vt-GSFNnW----~-~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIV--DGe- 323 (346)
+++|+.+. +.++|.|. |+-..| . ...+|.+.. .+..-..|.+++.++..+..|.|.| +|+
T Consensus 22 ~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~ 93 (120)
T PF02903_consen 22 TLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGET 93 (120)
T ss_dssp EEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEE
T ss_pred EEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEE
Confidence 45555543 47888886 666655 1 225787641 2234578999999999988888888 343
Q ss_pred eecCCCC
Q 019065 324 WKVDPQR 330 (346)
Q Consensus 324 W~~DP~n 330 (346)
|-++..-
T Consensus 94 ~~y~~~G 100 (120)
T PF02903_consen 94 YYYGERG 100 (120)
T ss_dssp EEEETTE
T ss_pred EEEeCCc
Confidence 5555433
No 55
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=65.53 E-value=8.5 Score=32.23 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=39.2
Q ss_pred EEEEEEecC--CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe--------EEEEEEEECCe
Q 019065 256 VVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ 323 (346)
Q Consensus 256 ~VTF~W~g~--AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPG--------rYEYKFIVDGe 323 (346)
..++....- .+.|.|.=+||+|.....+.-.+..+............|..++.||+. .+-.+|.+.|+
T Consensus 22 ~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ 99 (113)
T PF03370_consen 22 SGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQ 99 (113)
T ss_dssp EEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTE
T ss_pred EEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCC
Confidence 445555543 689999999999986543322111000000111234588888888754 57789999996
No 56
>PLN03244 alpha-amylase; Provisional
Probab=64.80 E-value=5.4 Score=44.69 Aligned_cols=60 Identities=18% Similarity=0.399 Sum_probs=40.4
Q ss_pred EEEE-EEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE--eCCe----EE---EEEEEEC
Q 019065 256 VVEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPG----TY---EIKFIVD 321 (346)
Q Consensus 256 ~VTF-~W~g~AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~--LPPG----rY---EYKFIVD 321 (346)
.++| .|-.+|.--.|+|+||||.+.-...+. +..+..+-|.|.+.+. |.+| .| ||.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 3444 455568999999999999987444332 1123347799999984 8887 23 6676654
No 57
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.56 E-value=10 Score=37.55 Aligned_cols=31 Identities=35% Similarity=0.353 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 019065 187 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKL 217 (346)
Q Consensus 187 n~~e~~~lk~mlh~kElel~~~K~el~~~k~ 217 (346)
=..||++||-|||||.-++..--.+|-+.|+
T Consensus 230 lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 230 LKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 3569999999999998877666556555555
No 58
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=61.52 E-value=9.3 Score=42.33 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=32.1
Q ss_pred EEEEEecC-CcEEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeC
Q 019065 257 VEIQYSGD-GEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLY 310 (346)
Q Consensus 257 VTF~W~g~-AksV~VtGSFNnW~~~I-pL~Kd~s~s~~a~~~skesG~FsttL~LP 310 (346)
|+|+-.+| ++.|.++|+||+|+... .|.. ....|.|++.++-.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-----------k~~~g~w~i~l~~~ 159 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-----------KDDLGVWEIDLPPK 159 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-----------ccccceeEEecCcc
Confidence 88887777 89999999999998752 2331 13678999887633
No 59
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=57.53 E-value=31 Score=30.48 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=36.4
Q ss_pred CCCceEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEE
Q 019065 251 LSGLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 317 (346)
Q Consensus 251 LsgL~~VTF~W~g~-AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYK 317 (346)
.+---+|+|.|... +..|...++..-|... .+.- +.+-.|+.++.- ||.|.|+
T Consensus 58 v~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~------------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 58 VKPGDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA------------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred ECCCCEEEEEECCCCCceEEEeCCCCccccc-cccc------------CCCcceEEEecc-cceEEEE
Confidence 34446899999997 9999999988655542 2221 124566666655 9999885
No 60
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=55.81 E-value=35 Score=34.30 Aligned_cols=19 Identities=0% Similarity=0.240 Sum_probs=11.0
Q ss_pred EEEEEecCCcEEEEEeeeC
Q 019065 257 VEIQYSGDGEIVEVAGSFN 275 (346)
Q Consensus 257 VTF~W~g~AksV~VtGSFN 275 (346)
.-|....|++.......++
T Consensus 182 l~~~c~SP~~sLt~sst~~ 200 (305)
T PF15290_consen 182 LDFSCDSPAKSLTRSSTYT 200 (305)
T ss_pred cCCccCCcccccccccccc
Confidence 3444444677777766665
No 61
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=53.83 E-value=1.1e+02 Score=30.10 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhh----------hhhhhhhhcccc
Q 019065 187 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVT----------EINKAEKLISDK 240 (346)
Q Consensus 187 n~~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~----------~i~ea~~li~eK 240 (346)
.+.|++.+|..|..-..++...|.+|++.+.+++.++.+.+. +|.+|++.+.+.
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555555554444333 777777777643
No 62
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.30 E-value=19 Score=39.56 Aligned_cols=51 Identities=29% Similarity=0.348 Sum_probs=39.8
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccch
Q 019065 191 IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD 241 (346)
Q Consensus 191 ~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~~i~ea~~li~eK~ 241 (346)
|++||+.+-||.+||.++|.+|+.++.++..|...--.++.--..|+-.|.
T Consensus 116 iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~ 166 (907)
T KOG2264|consen 116 IEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQI 166 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccC
Confidence 578999999999999999999999988887766665555555555665553
No 63
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=49.85 E-value=48 Score=36.51 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=26.4
Q ss_pred HhhhccHHHHHHHHHHhhHHHHHHhHHHHHHH
Q 019065 182 ARRRENQLEIDHLKFMLHQKEMELSRLKEQIE 213 (346)
Q Consensus 182 a~~~~n~~e~~~lk~mlh~kElel~~~K~el~ 213 (346)
..++|=+.|+.+|++-|.+||.++..+++++.
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999998888773
No 64
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.72 E-value=19 Score=38.62 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=27.0
Q ss_pred CCCcEEEEEEeCCe-EEEEEEEEC---CeeecCCCCCeec
Q 019065 299 KSRLWSTVLWLYPG-TYEIKFIVD---GQWKVDPQRESVT 334 (346)
Q Consensus 299 esG~FsttL~LPPG-rYEYKFIVD---GeW~~DP~nPtVt 334 (346)
.+|.|.+.++++|| .|.|+|.|| |.+.+-+..-..+
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~R 135 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQR 135 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCCcceeEEEeecccccc
Confidence 35688899999999 899999999 5555555444433
No 65
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=45.19 E-value=44 Score=34.38 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=30.5
Q ss_pred EEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE--EeCCeEEEEEEEECCe
Q 019065 268 VEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGTYEIKFIVDGQ 323 (346)
Q Consensus 268 V~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL--~LPPGrYEYKFIVDGe 323 (346)
=.+.|+|.+=. ..+... ..+|.|+..+ ..+||.|+.++.+||.
T Consensus 151 ~~vvg~f~DdG--~g~DE~-----------p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 151 PIVVGEFEDDG--EGLDER-----------PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CEEEEeeccCC--ccCCCC-----------CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 35778885332 334322 2689999876 5789999999999984
No 66
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=43.21 E-value=39 Score=31.36 Aligned_cols=32 Identities=28% Similarity=0.676 Sum_probs=19.0
Q ss_pred CCCccccccCCCCCCCccccccccCCCcEEEEEEeC-CeEEEEEEE
Q 019065 275 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY-PGTYEIKFI 319 (346)
Q Consensus 275 NnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LP-PGrYEYKFI 319 (346)
..|+. +||... .+..|...+.+. +|+|+|+..
T Consensus 55 ~~w~~-vpM~~~------------gnDrW~a~f~~~~~G~~~f~Ve 87 (187)
T PF11896_consen 55 REWQE-VPMTPL------------GNDRWEASFTPDRPGRYEFRVE 87 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEE
T ss_pred Cccee-eccccC------------CCCEEEEEEECCCceeEEEEEE
Confidence 45864 799863 689999998765 899999865
No 67
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=43.11 E-value=53 Score=26.44 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=10.1
Q ss_pred CCcEEEEE-EeCCeEEEE
Q 019065 300 SRLWSTVL-WLYPGTYEI 316 (346)
Q Consensus 300 sG~FsttL-~LPPGrYEY 316 (346)
+..++.++ .+.||+|+|
T Consensus 73 g~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEF 90 (104)
T ss_dssp T-EEEEEEEE-S-EEEEE
T ss_pred CCEEEEEEcCCCCEEEEE
Confidence 34566665 799999887
No 68
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=41.90 E-value=44 Score=26.72 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=38.6
Q ss_pred eEEEEEEecC---CcEEEEEeee-CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE-C-CeeecC
Q 019065 255 EVVEIQYSGD---GEIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 327 (346)
Q Consensus 255 ~~VTF~W~g~---AksV~VtGSF-NnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIV-D-GeW~~D 327 (346)
-.|.+.+.++ -..|+|.++- ..| .+|.+. -...|.+.-.++.|-+.+|+-. | |+|...
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 4677777764 3689999544 458 578774 3569998877778899999988 7 887653
No 69
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.26 E-value=41 Score=33.21 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=40.5
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccc---hhHHHHHHhhCCCceEEEEEEe
Q 019065 196 FMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDK---DEELIAAEESLSGLEVVEIQYS 262 (346)
Q Consensus 196 ~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~~i~ea~~li~eK---~~~L~aAe~aLsgL~~VTF~W~ 262 (346)
.-|...+.+|-..+.+|.+.+..|+.|+...+..+.+.+++-.+- +.+|+.|+.-+++|..=..+|.
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 334444555555556666666666667766666666655555433 3677777777777755555554
No 70
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=38.70 E-value=10 Score=40.12 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcc--cch-hHHHHHHhhCC
Q 019065 192 DHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLIS--DKD-EELIAAEESLS 252 (346)
Q Consensus 192 ~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~~i~ea~~li~--eK~-~~L~aAe~aLs 252 (346)
++|+++...||....-...-|--++-+|..=+.+|.+.|...+++|. ||+ +.|++|...|-
T Consensus 422 ~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~ 485 (495)
T PF12004_consen 422 ERLRRQQEEKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLM 485 (495)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhhcccccccccccc
Confidence 68888888888764444444444444455555677778888888886 455 77888887743
No 71
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=38.55 E-value=66 Score=35.29 Aligned_cols=73 Identities=30% Similarity=0.339 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhHH-------------HHHHhhCCCce
Q 019065 189 LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEEL-------------IAAEESLSGLE 255 (346)
Q Consensus 189 ~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~~i~ea~~li~eK~~~L-------------~aAe~aLsgL~ 255 (346)
-+|+-+...|.|||.++.++-.+|+..++.++-+..+....|+.-.+.+..|...| +.+++.|+-|+
T Consensus 278 ~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 278 DDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 45788899999999999999999998888888887777777777777776665444 44555566666
Q ss_pred EEEEEE
Q 019065 256 VVEIQY 261 (346)
Q Consensus 256 ~VTF~W 261 (346)
.+-|--
T Consensus 358 ~ief~~ 363 (629)
T KOG0963|consen 358 AIEFGD 363 (629)
T ss_pred HhhcCC
Confidence 677653
No 72
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=37.87 E-value=78 Score=27.34 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=42.6
Q ss_pred cccccchHHhhhccHHHHHHHHHHhh-------------HHHHHHhHHHHHHHHHHHHHHHHhhhhh-hhhhhhhhhccc
Q 019065 174 GADFDSSEARRRENQLEIDHLKFMLH-------------QKEMELSRLKEQIEKEKLALSVLQTKAV-TEINKAEKLISD 239 (346)
Q Consensus 174 d~~kdl~ea~~~~n~~e~~~lk~mlh-------------~kElel~~~K~el~~~k~~Ls~Lq~kae-~~i~ea~~li~e 239 (346)
.+.+.+.-|-+++|+-.|+-|..-|. ..+.++...+.++++-+.+|.-.+.+-. .+|.+.++.|.+
T Consensus 28 ~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~e 107 (115)
T PF06476_consen 28 AIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAE 107 (115)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 47888899999999999998877553 3334444555555555555544333322 244444444444
Q ss_pred chhHHH
Q 019065 240 KDEELI 245 (346)
Q Consensus 240 K~~~L~ 245 (346)
.+.+|.
T Consensus 108 a~~eL~ 113 (115)
T PF06476_consen 108 AKAELK 113 (115)
T ss_pred HHHHHh
Confidence 444443
No 73
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=37.67 E-value=1.1e+02 Score=26.29 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.4
Q ss_pred eEEEEEEecCCcEEEE
Q 019065 255 EVVEIQYSGDGEIVEV 270 (346)
Q Consensus 255 ~~VTF~W~g~AksV~V 270 (346)
-+|+|.|...+..|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 4788888877666554
No 74
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=37.43 E-value=54 Score=27.00 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=26.1
Q ss_pred CCCcEEEEEEeCCeEEEEEEEECCeeecCCCCCee
Q 019065 299 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 333 (346)
Q Consensus 299 esG~FsttL~LPPGrYEYKFIVDGeW~~DP~nPtV 333 (346)
..|.=++.+.|+||+|....+. |.+.+-|..|.+
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~v 82 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPPV 82 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCce
Confidence 3566678899999999999888 566777776653
No 75
>PRK11637 AmiB activator; Provisional
Probab=36.65 E-value=1e+02 Score=31.10 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=3.9
Q ss_pred hhhhhhhhcc
Q 019065 229 EINKAEKLIS 238 (346)
Q Consensus 229 ~i~ea~~li~ 238 (346)
+|.+++.-|.
T Consensus 111 eI~~~q~~l~ 120 (428)
T PRK11637 111 SIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 76
>PRK10785 maltodextrin glucosidase; Provisional
Probab=35.49 E-value=1.4e+02 Score=31.93 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=38.1
Q ss_pred eEEEEEEecC--CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeC--CeEEEEEEEE--CCe
Q 019065 255 EVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 323 (346)
Q Consensus 255 ~~VTF~W~g~--AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LP--PGrYEYKFIV--DGe 323 (346)
..++++.... ...|.|.=.+++-...++|.+... +.....|.+++.++ ++++.|.|.+ +|+
T Consensus 21 ~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 21 LLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred EEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 4444444432 568888655555444567877421 11234699999886 7888898888 554
No 77
>PRK10093 primosomal replication protein N''; Provisional
Probab=34.37 E-value=40 Score=31.31 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=45.9
Q ss_pred CCccccCCCCCCCcccCC-cc-cccccchHHhhhccHHHHHHHHHHhhHHHHHHhHHHHH--HHHHHHHHHHHhhhhhh
Q 019065 154 ASFATVNHPLSEDHLGTG-VE-GADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQ--IEKEKLALSVLQTKAVT 228 (346)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~-~~-d~~kdl~ea~~~~n~~e~~~lk~mlh~kElel~~~K~e--l~~~k~~Ls~Lq~kae~ 228 (346)
..-+...+|+|..+++.- +. +..+. . ++ -+|| ++|..|...+|+.+.++-.- =.+..-+|.+++++...
T Consensus 82 LqRElatq~lR~~e~~~~~~~~~~~~~-l---qH-Qd~E-RRL~~Mv~dre~~L~~a~~~~~qq~lq~el~alegRL~R 154 (171)
T PRK10093 82 IAREAAAWSLREWDSAPPGLARWQRKR-I---QH-QEFE-RRLLEMVAERRARLARATDLVEQQTLHREVEAYEGRLAR 154 (171)
T ss_pred HHHHHHhhHHhhcCCCCCchhHHHHHH-H---Hh-HHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999886432 22 22222 2 55 5677 88999999999999977652 33445567777776654
No 78
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.91 E-value=3.4e+02 Score=28.16 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=22.2
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 019065 190 EIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKA 226 (346)
Q Consensus 190 e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~ka 226 (346)
+++.|+..+.+-|.++.++..++...++.+..|+...
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666666666655555554443
No 79
>PRK11637 AmiB activator; Provisional
Probab=32.71 E-value=1.1e+02 Score=30.81 Aligned_cols=31 Identities=6% Similarity=0.142 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 019065 189 LEIDHLKFMLHQKEMELSRLKEQIEKEKLAL 219 (346)
Q Consensus 189 ~e~~~lk~mlh~kElel~~~K~el~~~k~~L 219 (346)
.+++.|...+..-+.++..+..+|.+.+.+|
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei 105 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQI 105 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333333333333333
No 80
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=30.05 E-value=2e+02 Score=25.33 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=39.1
Q ss_pred eEEEEEEecC-----C----cEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCe--
Q 019065 255 EVVEIQYSGD-----G----EIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQ-- 323 (346)
Q Consensus 255 ~~VTF~W~g~-----A----ksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIVDGe-- 323 (346)
..+.|++.+. + -.+.+.|.+..|... .+++ ++...+..++ -.+.||+.+||+
T Consensus 78 ~~~~~~~~~a~~~~dg~~~~~~~~~~G~~~~~~~g-~~k~------------g~~~~~~~~~----~v~yyk~~idG~~~ 140 (167)
T PF04985_consen 78 KGVRFTFRGAYQDDDGETIPVVAVIRGRIKSVDPG-EWKP------------GEKTETSIEF----SVTYYKLEIDGKEI 140 (167)
T ss_pred ccEEEEEEEEEEEcCCcEEEEEEEEEEEEEeeCCc-ccCc------------CccccceEEE----EEEEEEEEECCEEE
Confidence 4566666642 2 356777888777643 3332 1223333333 267999999997
Q ss_pred eecCCCCCeec
Q 019065 324 WKVDPQRESVT 334 (346)
Q Consensus 324 W~~DP~nPtVt 334 (346)
+-+|..+.+..
T Consensus 141 ~eiD~~n~i~~ 151 (167)
T PF04985_consen 141 IEIDKLNNIYR 151 (167)
T ss_pred EEEECccCEEE
Confidence 78888888655
No 81
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.23 E-value=1.1e+02 Score=22.21 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=13.9
Q ss_pred EEEeCCeEEEEEEEE---CCeeecCC
Q 019065 306 VLWLYPGTYEIKFIV---DGQWKVDP 328 (346)
Q Consensus 306 tL~LPPGrYEYKFIV---DGeW~~DP 328 (346)
-..||||.|.++-.+ +|.|..++
T Consensus 33 ~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 33 YTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEeCCCEEEEEEEEEECCCCCcCccc
Confidence 357999999988777 57887765
No 82
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=28.17 E-value=2.5e+02 Score=26.54 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=3.5
Q ss_pred EEEEEecCC
Q 019065 257 VEIQYSGDG 265 (346)
Q Consensus 257 VTF~W~g~A 265 (346)
.+++=|.+|
T Consensus 205 ~~I~AP~~G 213 (334)
T TIGR00998 205 TVIRAPFDG 213 (334)
T ss_pred cEEEcCCCc
Confidence 344433334
No 83
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=27.80 E-value=1.9e+02 Score=21.45 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=26.7
Q ss_pred EEEEEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECC
Q 019065 257 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG 322 (346)
Q Consensus 257 VTF~W~g~AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIVDG 322 (346)
+.++-.-.+-.|+|-|.+-| .. |+. ...|++|.|.+++.-+|
T Consensus 4 l~V~s~p~gA~V~vdg~~~G-~t--p~~---------------------~~~l~~G~~~v~v~~~G 45 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIG-TT--PLT---------------------LKDLPPGEHTVTVEKPG 45 (71)
T ss_pred EEEEEECCCCEEEECCEEec-cC--cce---------------------eeecCCccEEEEEEECC
Confidence 34444445788999987776 11 211 11377888888888887
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.73 E-value=2.2e+02 Score=27.05 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=22.6
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHH
Q 019065 192 DHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAA 247 (346)
Q Consensus 192 ~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~~i~ea~~li~eK~~~L~aA 247 (346)
..++..+..-+.++..++...+..+..|..++.....+....+..|.++..+|..+
T Consensus 219 ~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l 274 (312)
T PF00038_consen 219 KELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 33333333333333333333333333333344444444444444444444444433
No 85
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.09 E-value=2.5e+02 Score=24.50 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=26.3
Q ss_pred hccHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 019065 185 RENQLEIDHLKFMLHQKEMELSRLKEQIEKEKL 217 (346)
Q Consensus 185 ~~n~~e~~~lk~mlh~kElel~~~K~el~~~k~ 217 (346)
.-|-..+++|...++++|-|+..+|.+++....
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~ 44 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEA 44 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336677899999999999999999988776543
No 86
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.01 E-value=62 Score=35.16 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=22.5
Q ss_pred eCCeEEEEEEEECCeee---cCCCCCeecC
Q 019065 309 LYPGTYEIKFIVDGQWK---VDPQRESVTK 335 (346)
Q Consensus 309 LPPGrYEYKFIVDGeW~---~DP~nPtVtD 335 (346)
-+.|.|+|||.++|+|+ .|...|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 46799999999999994 5888888764
No 87
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=25.76 E-value=3e+02 Score=23.81 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=17.9
Q ss_pred EeCCeEEEEEEEE---CCeeecCCCC
Q 019065 308 WLYPGTYEIKFIV---DGQWKVDPQR 330 (346)
Q Consensus 308 ~LPPGrYEYKFIV---DGeW~~DP~n 330 (346)
.|+||+|.++-.+ ++.|....+-
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F 127 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDF 127 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEE
Confidence 5899999999888 4568876543
No 88
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.62 E-value=1.6e+02 Score=29.30 Aligned_cols=12 Identities=42% Similarity=0.465 Sum_probs=8.2
Q ss_pred hhhhhhhhcccc
Q 019065 229 EINKAEKLISDK 240 (346)
Q Consensus 229 ~i~ea~~li~eK 240 (346)
+|.+|++.+.+.
T Consensus 254 ~I~~ae~~~~~~ 265 (312)
T smart00787 254 EIAEAEKKLEQC 265 (312)
T ss_pred HHHHHHHHHHhc
Confidence 677777777554
No 89
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=25.15 E-value=2.1e+02 Score=24.56 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=11.2
Q ss_pred CCcEEEEEEeCCeEEEEE
Q 019065 300 SRLWSTVLWLYPGTYEIK 317 (346)
Q Consensus 300 sG~FsttL~LPPGrYEYK 317 (346)
...|+.++. .||.|.|.
T Consensus 83 G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 83 GTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEec-CCcEEEEE
Confidence 346777764 57777775
No 90
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=25.11 E-value=27 Score=34.19 Aligned_cols=66 Identities=11% Similarity=-0.055 Sum_probs=44.8
Q ss_pred eEEEEEEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCeeecCCCCCeec
Q 019065 255 EVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT 334 (346)
Q Consensus 255 ~~VTF~W~g~AksV~VtGSFNnW~~~IpL~Kd~s~s~~a~~~skesG~FsttL~LPPGrYEYKFIVDGeW~~DP~nPtVt 334 (346)
.+.++.|..-++...+. |+.|.-.+++... -+..|... +++|+|+-+|+++ +..++++
T Consensus 223 lpp~l~~v~lnk~~~~~--~~~~~~~~p~hv~------------lnhl~~~s--ik~~~~~~~~~~r------~~~k~vt 280 (289)
T KOG1616|consen 223 LPPHLLQVILNKDTQVS--CDPALLPEPNHVA------------LNHLYALS--IKDGVMVLSFTHR------YKKKYVT 280 (289)
T ss_pred CCcchheeecccccccc--ccccccCCccchh------------hhhhhhhc--cCCCeeEecceec------cccccee
Confidence 35555555444444444 8888766666653 35677777 9999999999999 7777777
Q ss_pred CCCccceE
Q 019065 335 KGGICNNI 342 (346)
Q Consensus 335 D~G~vNNV 342 (346)
..+..+++
T Consensus 281 ~~lyk~~~ 288 (289)
T KOG1616|consen 281 TGLYKPLQ 288 (289)
T ss_pred EEeeeecc
Confidence 66665543
No 91
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.83 E-value=97 Score=36.25 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHhhHHHH----------------HHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHH
Q 019065 187 NQLEIDHLKFMLHQKEM----------------ELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAE 248 (346)
Q Consensus 187 n~~e~~~lk~mlh~kEl----------------el~~~K~el~~~k~~Ls~Lq~kae~~i~ea~~li~eK~~~L~aAe 248 (346)
=..||++||.||....+ +.-.+.++|.+.+..++.|+.--++++.+|..+-++..+.|...-
T Consensus 366 LreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emG 443 (1221)
T KOG0245|consen 366 LREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMG 443 (1221)
T ss_pred HHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC
Confidence 35788999999987654 355678888899999999999999999999988887765554433
No 92
>PRK14145 heat shock protein GrpE; Provisional
Probab=24.49 E-value=2.4e+02 Score=26.69 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccch-----hHHHHHHhhCC
Q 019065 187 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD-----EELIAAEESLS 252 (346)
Q Consensus 187 n~~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~~i~ea~~li~eK~-----~~L~aAe~aLs 252 (346)
...++..|+..+...+-++-.++..+.+..|...-.+.+++.++.++.+...++- +-+|.-+.+|.
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~ 113 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALA 113 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHh
Confidence 4556677777777777777778888888888888888888888888877776663 66666666664
No 93
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.40 E-value=96 Score=23.71 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=26.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcccch-hHHHHHHh
Q 019065 216 KLALSVLQTKAVTEINKAEKLISDKD-EELIAAEE 249 (346)
Q Consensus 216 k~~Ls~Lq~kae~~i~ea~~li~eK~-~~L~aAe~ 249 (346)
+.-|+.|-.-||.+|.+-++.-..|+ |=|+|++.
T Consensus 14 ~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAiea 48 (49)
T PF11629_consen 14 QQRLASLDPEMEQEIEELRQRYQAKRQPILDAIEA 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHHhc
Confidence 34477888899999999999998887 77777654
No 94
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=24.34 E-value=1.7e+02 Score=22.81 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=9.8
Q ss_pred CCcEEEEEEeCCeEEEEE
Q 019065 300 SRLWSTVLWLYPGTYEIK 317 (346)
Q Consensus 300 sG~FsttL~LPPGrYEYK 317 (346)
...|+.++. .||.|.|.
T Consensus 53 g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 53 EQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred CCEEEEECC-CCEEEEEE
Confidence 345555553 47777664
No 95
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=24.08 E-value=1.3e+02 Score=31.82 Aligned_cols=81 Identities=21% Similarity=0.189 Sum_probs=51.4
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHH--Hhh-hhhhhhhhhhhhcccch-----hHHHHHHhhCCCceEEEEEEecCCcE
Q 019065 196 FMLHQKEMELSRLKEQIEKEKLALSV--LQT-KAVTEINKAEKLISDKD-----EELIAAEESLSGLEVVEIQYSGDGEI 267 (346)
Q Consensus 196 ~mlh~kElel~~~K~el~~~k~~Ls~--Lq~-kae~~i~ea~~li~eK~-----~~L~aAe~aLsgL~~VTF~W~g~Aks 267 (346)
-.+|..-.||..++..|+.--+.-+. ||+ +...+++...+.++-|. ..+.-......+.+|+.+.-...-..
T Consensus 109 ~~y~~gp~eL~~AR~~ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~ 188 (459)
T KOG0272|consen 109 TWYHEGPVELRVARLWIANYSLERAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSK 188 (459)
T ss_pred ceeccCCHHHHHHHHHHHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCC
Confidence 34555556666666665543222222 222 22336666655555442 45555666788889999999999999
Q ss_pred EEEEeeeCC
Q 019065 268 VEVAGSFNG 276 (346)
Q Consensus 268 V~VtGSFNn 276 (346)
+.++|||.|
T Consensus 189 ~laT~swsG 197 (459)
T KOG0272|consen 189 HLATGSWSG 197 (459)
T ss_pred eEEEeecCC
Confidence 999999986
No 96
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=23.76 E-value=2.8e+02 Score=29.23 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhh
Q 019065 189 LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEI 230 (346)
Q Consensus 189 ~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~~i 230 (346)
.|.+..|.+......+..++|.+++.+|+.+..++.+.....
T Consensus 379 ~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ 420 (522)
T PF05701_consen 379 SEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAAL 420 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888999999999999999988887766643
No 97
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=23.65 E-value=1.5e+02 Score=29.61 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=44.0
Q ss_pred ccccchHHhhhccHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhh-------hhhhhhhhcccchhHHHHH
Q 019065 175 ADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVT-------EINKAEKLISDKDEELIAA 247 (346)
Q Consensus 175 ~~kdl~ea~~~~n~~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~-------~i~ea~~li~eK~~~L~aA 247 (346)
+..|.....+..++.|-.|..+|||-+-|.- +=.=+++++++++....+|. .|.+-++.+..|+-+|+..
T Consensus 130 ~~~d~~rgkk~~~~~Ed~H~LRLLhNR~LQW---RFaNArAeaa~~~q~~~aE~~L~~~w~~is~Lr~sV~~KRi~lq~~ 206 (311)
T PF04484_consen 130 FAADVRRGKKGASQIEDAHQLRLLHNRLLQW---RFANARAEAALSAQKANAEKKLYNAWLRISELRDSVAMKRIELQRL 206 (311)
T ss_pred ccccccccccCcchhHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444455567778899999999776643 22223344555554444444 5666666677777666665
Q ss_pred Hhh
Q 019065 248 EES 250 (346)
Q Consensus 248 e~a 250 (346)
+..
T Consensus 207 kq~ 209 (311)
T PF04484_consen 207 KQE 209 (311)
T ss_pred HHH
Confidence 554
No 98
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=23.18 E-value=41 Score=28.40 Aligned_cols=19 Identities=21% Similarity=0.651 Sum_probs=14.2
Q ss_pred CeEEEEEEEECCeeecCCCC
Q 019065 311 PGTYEIKFIVDGQWKVDPQR 330 (346)
Q Consensus 311 PGrYEYKFIVDGeW~~DP~n 330 (346)
-|-|+|.|. ||+|+++-+.
T Consensus 66 ~G~~hf~~~-~~~W~~~r~g 84 (105)
T cd00503 66 VGGYHFDYK-NGKWICTRSG 84 (105)
T ss_pred CCCccceec-CCEEEECCCC
Confidence 366888884 9999988543
No 99
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=23.15 E-value=1.2e+02 Score=22.50 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=18.4
Q ss_pred cCCCcEEEEEEeCCeEEEEEEEECCe
Q 019065 298 RKSRLWSTVLWLYPGTYEIKFIVDGQ 323 (346)
Q Consensus 298 kesG~FsttL~LPPGrYEYKFIVDGe 323 (346)
...|.|... .||||.|..++.-.|-
T Consensus 35 d~~G~f~~~-~l~~g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 35 DSDGRFSFE-GLPPGTYTLRVSAPGY 59 (82)
T ss_dssp -TTSEEEEE-EE-SEEEEEEEEBTTE
T ss_pred CCCceEEEE-ccCCEeEEEEEEECCc
Confidence 467888876 4677999999888884
No 100
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.14 E-value=1.3e+02 Score=28.56 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=26.9
Q ss_pred hhccHHHHHHHHHHhhHHHHHHhHHHHHHHH
Q 019065 184 RRENQLEIDHLKFMLHQKEMELSRLKEQIEK 214 (346)
Q Consensus 184 ~~~n~~e~~~lk~mlh~kElel~~~K~el~~ 214 (346)
.++.+||+-+||+.|+.=|-.+.++..+.+.
T Consensus 91 ~~~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 91 TEGTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999999999988887765
No 101
>PRK09039 hypothetical protein; Validated
Probab=23.12 E-value=2.3e+02 Score=28.34 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhh---hhhhhhhhcccchhHHHHH
Q 019065 188 QLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVT---EINKAEKLISDKDEELIAA 247 (346)
Q Consensus 188 ~~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~---~i~ea~~li~eK~~~L~aA 247 (346)
+.+.+.+|..-...--...+++.||+..|.+|+.|+.-.+. ...+++..|.+-..+|++|
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 102
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=22.98 E-value=2e+02 Score=31.31 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhh---hhhhhhhhc
Q 019065 186 ENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVT---EINKAEKLI 237 (346)
Q Consensus 186 ~n~~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~---~i~ea~~li 237 (346)
.|+.||.+|..|..+-|-.--+.-.|+.+.|-+|.--++|+.. ++-.|++.|
T Consensus 25 g~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~v 79 (604)
T KOG3564|consen 25 GNEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQV 79 (604)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence 3789999999999888776666666666666666666665555 455555555
No 103
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=22.31 E-value=11 Score=31.93 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=27.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc-ccchhHHHHHHhhCCCceEEEEEEec-----CCcEEEEEeeeC
Q 019065 202 EMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLI-SDKDEELIAAEESLSGLEVVEIQYSG-----DGEIVEVAGSFN 275 (346)
Q Consensus 202 Elel~~~K~el~~~k~~Ls~Lq~kae~~i~ea~~li-~eK~~~L~aAe~aLsgL~~VTF~W~g-----~AksV~VtGSFN 275 (346)
|.++.++..++++.|.++..|+.+... ...+ ....+..+.+--.|+-.+.+.|.|.. ....|.|.|.-.
T Consensus 19 E~~l~~l~~el~~L~~~l~eLe~~~~~-----~~~~~~~~~~~~d~~vlklkLYrsLGI~~e~~~~~~~~~~~lI~~~~~ 93 (118)
T PF08286_consen 19 ESELESLQSELEELKEELEELEEQEVE-----GEEVDEDTTEEIDSNVLKLKLYRSLGIELEYDEDNGENNKVLIRNDNK 93 (118)
T ss_dssp ------------------------HT-----------CCCCCHHCCCHHHHHHHHHCCEEEEC-----CCTCCEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-----hcccccccCcccchHHHHHHHHHhCcEEEEecccccccceEEEEcCCC
Confidence 455666666666666667666666555 1111 11223333333344445677788876 567788887776
Q ss_pred CCccccccCCC
Q 019065 276 GWHHRIKMDPL 286 (346)
Q Consensus 276 nW~~~IpL~Kd 286 (346)
|=-+.+++.+.
T Consensus 94 g~v~~l~ld~~ 104 (118)
T PF08286_consen 94 GDVHVLNLDPK 104 (118)
T ss_dssp SSEEEEEE-TT
T ss_pred CCceEEeeCCC
Confidence 43344666653
No 104
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.08 E-value=2.4e+02 Score=31.30 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHh------hhhhhhhhhhhhhcccchhHHHHHH
Q 019065 188 QLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ------TKAVTEINKAEKLISDKDEELIAAE 248 (346)
Q Consensus 188 ~~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq------~kae~~i~ea~~li~eK~~~L~aAe 248 (346)
+.|+.+|++.+-+.+.++.+++++|+..+..+-.=. .-.+..|....+.|++|..+.+.-+
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888888888888888888887775554210 1123366666666666654443333
No 105
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.98 E-value=2.8e+02 Score=24.78 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Q 019065 187 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVL 222 (346)
Q Consensus 187 n~~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~L 222 (346)
.+.-++.|+..+-.|+.|..++|.+|++....-..|
T Consensus 92 yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 92 YEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566677777777777777776666555444333
No 106
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.95 E-value=3.1e+02 Score=20.11 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q 019065 188 QLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAV 227 (346)
Q Consensus 188 ~~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae 227 (346)
+.+.+.||+.-..=-.+..+++.|.++.++++..|.+++.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456677777766666777888888888888888777654
No 107
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=21.42 E-value=1.4e+02 Score=25.20 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=18.6
Q ss_pred EEEEeC-CeEEEEEEEECCeeecCCCC
Q 019065 305 TVLWLY-PGTYEIKFIVDGQWKVDPQR 330 (346)
Q Consensus 305 ttL~LP-PGrYEYKFIVDGeW~~DP~n 330 (346)
+-+-=| .|-|+|.|. +|+|+++-+.
T Consensus 62 IWlsSpisG~~hf~~~-~~~W~~~r~g 87 (109)
T PF01491_consen 62 IWLSSPISGPFHFDYD-DGKWIDTRDG 87 (109)
T ss_dssp EEEEETTTEEEEEEEE-SSSEEETTTT
T ss_pred HHHhcccCCceEEEEc-CCEEEECCCC
Confidence 334456 788888888 9999987654
No 108
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.16 E-value=2e+02 Score=34.12 Aligned_cols=68 Identities=25% Similarity=0.316 Sum_probs=50.4
Q ss_pred hccHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHhhCC
Q 019065 185 RENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLS 252 (346)
Q Consensus 185 ~~n~~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~~i~ea~~li~eK~~~L~aAe~aLs 252 (346)
++.+.||.-|..++.+.|.++..-+..+.+.-..++.=..+.+.++.+...-+++.+.++++|+..|.
T Consensus 443 ~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~ 510 (1293)
T KOG0996|consen 443 QKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELD 510 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888887777777777776777776677777777777777777777777777654
No 109
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=21.15 E-value=50 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.727 Sum_probs=19.8
Q ss_pred CCcEEEEEEeCCeEEEEEEEECCeeecCCCC
Q 019065 300 SRLWSTVLWLYPGTYEIKFIVDGQWKVDPQR 330 (346)
Q Consensus 300 sG~FsttL~LPPGrYEYKFIVDGeW~~DP~n 330 (346)
.-.|... |.|-|+|.|. +|.|+++-+.
T Consensus 57 ~QIWlas---~sG~~hf~~~-~~~W~~~r~g 83 (105)
T PRK00446 57 HELWLAA---KSGGFHFDYK-DGEWICDRSG 83 (105)
T ss_pred hheeEec---CCCCccceec-CCeEEECCCC
Confidence 4567666 4687888885 9999988543
No 110
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=21.07 E-value=1.2e+02 Score=28.21 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=26.1
Q ss_pred hHHhhhccHHHHHHHHHHhhHHHHHHhHHHHHH
Q 019065 180 SEARRRENQLEIDHLKFMLHQKEMELSRLKEQI 212 (346)
Q Consensus 180 ~ea~~~~n~~e~~~lk~mlh~kElel~~~K~el 212 (346)
.|..|. +.||.-|+..|+.||.+...+|+.|
T Consensus 36 ~EL~Kv--EeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 36 SELAKV--EEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 566666 6689999999999999999999874
No 111
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.04 E-value=3.9e+02 Score=31.48 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=13.1
Q ss_pred CCcccccccHHHH--HHhhhhcCC
Q 019065 111 LNGHYEKADMEEK--VANFIQNGD 132 (346)
Q Consensus 111 ~~~~~~~~~~~~~--~~~~~~~~~ 132 (346)
..|-=..+.++.| ..+|+|.|+
T Consensus 593 ~s~iE~~lLiEdk~Ea~~~m~s~~ 616 (1074)
T KOG0250|consen 593 KSGIEQVLLIEDKKEAREFMQSDK 616 (1074)
T ss_pred hccceeEEEecchHHHHHHHhcCC
Confidence 3333344555652 568999995
No 112
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.91 E-value=2.6e+02 Score=26.88 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=46.3
Q ss_pred ccchHHhhhccH----HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccc
Q 019065 177 FDSSEARRRENQ----LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDK 240 (346)
Q Consensus 177 kdl~ea~~~~n~----~e~~~lk~mlh~kElel~~~K~el~~~k~~Ls~Lq~kae~~i~ea~~li~eK 240 (346)
..+.-|+++=|+ .+|+.||......|.++..++.++...|.+......+-..---+-+.|+.-|
T Consensus 16 ~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 16 ETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445544444 5899999999999999999999999999888765555554444555566554
No 113
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.72 E-value=3.2e+02 Score=26.36 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=6.8
Q ss_pred hcccchhHHHHHHhhC
Q 019065 236 LISDKDEELIAAEESL 251 (346)
Q Consensus 236 li~eK~~~L~aAe~aL 251 (346)
-+.+-+.++..++..+
T Consensus 254 ~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 254 RLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 114
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.14 E-value=38 Score=31.23 Aligned_cols=48 Identities=33% Similarity=0.426 Sum_probs=17.6
Q ss_pred cccccccchHHhhhccHHHHHHHHHHhhHHH---HHHhHHHHHHHHHHHHHHHHhhh
Q 019065 172 VEGADFDSSEARRRENQLEIDHLKFMLHQKE---MELSRLKEQIEKEKLALSVLQTK 225 (346)
Q Consensus 172 ~~d~~kdl~ea~~~~n~~e~~~lk~mlh~kE---lel~~~K~el~~~k~~Ls~Lq~k 225 (346)
|+|++.+|-.|-.+ | +.|..=|-.|| -+.-|+|.|+...|.+| .+|.|
T Consensus 2 LeD~EsklN~AIER-n----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl-~V~ek 52 (166)
T PF04880_consen 2 LEDFESKLNQAIER-N----ALLESELDEKENLREEVQRLKDELRDLKQEL-IVQEK 52 (166)
T ss_dssp HHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHH-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45777777666666 5 56666565555 24568888888888888 44433
No 115
>PRK02710 plastocyanin; Provisional
Probab=20.00 E-value=2.8e+02 Score=23.21 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=6.9
Q ss_pred cEEEEEEeCCeEEEE
Q 019065 302 LWSTVLWLYPGTYEI 316 (346)
Q Consensus 302 ~FsttL~LPPGrYEY 316 (346)
.|+.++.- ||.|.|
T Consensus 89 t~~~tF~~-~G~y~y 102 (119)
T PRK02710 89 SWEETFSE-AGTYTY 102 (119)
T ss_pred EEEEEecC-CEEEEE
Confidence 34444443 566544
Done!